Citrus Sinensis ID: 040300
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 605 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LPJ4 | 605 | ABC transporter E family | yes | no | 1.0 | 1.0 | 0.919 | 0.0 | |
| Q9LID6 | 603 | ABC transporter E family | no | no | 0.996 | 1.0 | 0.793 | 0.0 | |
| P61222 | 599 | ATP-binding cassette sub- | yes | no | 0.990 | 1.0 | 0.752 | 0.0 | |
| P61221 | 599 | ATP-binding cassette sub- | yes | no | 0.990 | 1.0 | 0.752 | 0.0 | |
| Q03195 | 608 | Translation initiation fa | yes | no | 0.990 | 0.985 | 0.684 | 0.0 | |
| O60102 | 593 | Translation initiation fa | yes | no | 0.975 | 0.994 | 0.656 | 0.0 | |
| Q58129 | 600 | Uncharacterized ABC trans | yes | no | 0.963 | 0.971 | 0.482 | 1e-159 | |
| Q9M0D0 | 181 | ABC transporter E family | no | no | 0.285 | 0.955 | 0.674 | 8e-58 | |
| Q73R11 | 489 | Putative ABC transporter | yes | no | 0.695 | 0.860 | 0.236 | 6e-22 | |
| Q897I2 | 437 | Putative ABC transporter | yes | no | 0.507 | 0.702 | 0.274 | 7e-20 |
| >sp|Q8LPJ4|AB2E_ARATH ABC transporter E family member 2 OS=Arabidopsis thaliana GN=ABCE2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1164 bits (3012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/605 (91%), Positives = 586/605 (96%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+DRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVT +K+AFISEELCIGCGI
Sbjct: 1 MADRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTVGSKLAFISEELCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPFEAIQIINLP+DL+KDTTHRYG NTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFEAIQIINLPRDLEKDTTHRYGANTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGKLKPNLGRF +PPDWQEILT+FRGSELQNYFTRILEDNLKAIIKPQYVDHIP+AV
Sbjct: 121 KILAGKLKPNLGRFTSPPDWQEILTHFRGSELQNYFTRILEDNLKAIIKPQYVDHIPRAV 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
+GNVG+VLDQKDERD KA+LC DL+LNQVIDR+V +LSGGELQRFAIAVVA+QNAEIYMF
Sbjct: 181 KGNVGEVLDQKDERDKKAELCADLELNQVIDRDVENLSGGELQRFAIAVVAIQNAEIYMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGINIFLAGFVPTENLRFRDESLTF+VAETPQESAEEI++YARYKYPTM KTQG
Sbjct: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFKVAETPQESAEEIQSYARYKYPTMTKTQG 360
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
NF+L+V EGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD E D EIPEFNVSYKPQ
Sbjct: 361 NFRLRVSEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDDTEGPDREIPEFNVSYKPQ 420
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPKFQ++VRHLLHQKIRDSY HPQF+SDVMKPL IEQLMDQEVVNLSGGELQRVAL L
Sbjct: 421 KISPKFQNSVRHLLHQKIRDSYMHPQFMSDVMKPLQIEQLMDQEVVNLSGGELQRVALTL 480
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPADIYLIDEPSAYLDSEQRIVA+KVIKRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 481 CLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
YEGQPS+DC AN PQSLL+GMNLFLSHL+ITFRRDPTNFRPRINKL+STKDR+QK+AGSY
Sbjct: 541 YEGQPSIDCTANCPQSLLSGMNLFLSHLNITFRRDPTNFRPRINKLESTKDREQKSAGSY 600
Query: 601 YYLDD 605
YYLDD
Sbjct: 601 YYLDD 605
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LID6|AB1E_ARATH ABC transporter E family member 1 OS=Arabidopsis thaliana GN=ABCE1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/605 (79%), Positives = 540/605 (89%), Gaps = 2/605 (0%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
MSDRLTRIAIVS DRCKPKKCRQECKKSCPVVKTGKLCIEV +K AFISEELCIGCGI
Sbjct: 1 MSDRLTRIAIVSEDRCKPKKCRQECKKSCPVVKTGKLCIEVGSTSKSAFISEELCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPFEAIQIINLPKDL KDTTHRYG N FKLHRLP+PRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFEAIQIINLPKDLAKDTTHRYGANGFKLHRLPIPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGKLKPNLGRFN PPDW+EILT+FRGSELQ+YF R++E+NLK IKPQ+VD+I + V
Sbjct: 121 KILAGKLKPNLGRFNTPPDWEEILTHFRGSELQSYFIRVVEENLKTAIKPQHVDYIKEVV 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
+GN+G++L++ DER + ++C D++LNQV++R +SGGELQRFAIA V V+ A+IYMF
Sbjct: 181 RGNLGKMLEKLDERGLMEEICADMELNQVLEREARQVSGGELQRFAIAAVFVKKADIYMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDV+QRLKAAQV+RSLLR +SYVIVVEHDLSVLDYLSDF+CCLYGKPGAYGVVT
Sbjct: 241 DEPSSYLDVRQRLKAAQVIRSLLRHDSYVIVVEHDLSVLDYLSDFVCCLYGKPGAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGIN+FLAGF+PTENLRFRDESLTFRV+ET QE+ E+++YARYKYP M K G
Sbjct: 301 LPFSVREGINVFLAGFIPTENLRFRDESLTFRVSETTQENDGEVKSYARYKYPNMTKQLG 360
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
+FKL+V+EGEFTDSQIIVMLGENGTGKTTFIRMLAG + E EIPEFNVSYKPQ
Sbjct: 361 DFKLEVMEGEFTDSQIIVMLGENGTGKTTFIRMLAGAFPRE--EGVQSEIPEFNVSYKPQ 418
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
K + TVR LLH KIRD+ HPQF+SDV++PL IEQLMDQ V LSGGE QRVA+ L
Sbjct: 419 GNDSKRECTVRQLLHDKIRDACAHPQFMSDVIRPLQIEQLMDQVVKTLSGGEKQRVAITL 478
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPADIYLIDEPSA+LDSEQRI A+KVIKRFILHAKKTAF+VEHDFIMATYLADRVIV
Sbjct: 479 CLGKPADIYLIDEPSAHLDSEQRITASKVIKRFILHAKKTAFIVEHDFIMATYLADRVIV 538
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
YEGQP+V C+A++PQSLL+GMN FLSHL+ITFRRDPTNFRPRINKL+S KD++QK AGSY
Sbjct: 539 YEGQPAVKCIAHSPQSLLSGMNHFLSHLNITFRRDPTNFRPRINKLESIKDKEQKTAGSY 598
Query: 601 YYLDD 605
YYLDD
Sbjct: 599 YYLDD 603
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P61222|ABCE1_MOUSE ATP-binding cassette sub-family E member 1 OS=Mus musculus GN=Abce1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/605 (75%), Positives = 524/605 (86%), Gaps = 6/605 (0%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+D+LTRIAIV+ D+CKPKKCRQECKKSCPVV+ GKLCIEVTP +KIA+ISE LCIGCGI
Sbjct: 1 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
C+KKCPF A+ I+NLP +L+K+TTHRY N FKLHRLP+PRPG+VLGLVGTNGIGKSTAL
Sbjct: 61 CIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGK KPNLG++++PPDWQEILTYFRGSELQNYFT+ILED+LKAIIKPQYVD IPKA
Sbjct: 121 KILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAA 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
+G VG +LD+KDE +A +C LDL + +RNV DLSGGELQRFA AVV +Q A+I+MF
Sbjct: 181 KGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAA +RSL+ P+ Y+IVVEHDLSVLDYLSDFICCLYG P AYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
+PFSVREGINIFL G+VPTENLRFRD SL F+VAET E EE++ YKYP M K G
Sbjct: 301 MPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANE--EEVKKMCMYKYPGMKKKMG 358
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
F+L +V GEFTDS+I+VMLGENGTGKTTFIRMLAG LKP D E+P NVSYKPQ
Sbjct: 359 EFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKP----DEGGEVPVLNVSYKPQ 414
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPK +VR LLH+KIRD+YTHPQFV+DVMKPL IE ++DQEV LSGGELQRVAL L
Sbjct: 415 KISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALAL 474
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPAD+YLIDEPSAYLDSEQR++AA+V+KRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 475 CLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIV 534
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
++G PS + VAN+PQ+LL GMN FLS L+ITFRRDP N+RPRINKL+S KD +QK +G+Y
Sbjct: 535 FDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNY 594
Query: 601 YYLDD 605
++LDD
Sbjct: 595 FFLDD 599
|
Antagonizes the binding of 2-5A (5'-phosphorylated 2',5'-linked oligoadenylates) by RNase L through direct interaction with RNase L and therefore inhibits its endoribonuclease activity. May play a central role in the regulation of mRNA turnover. Antagonizes the anti-viral effect of the interferon-regulated 2-5A/RNase L pathway. Mus musculus (taxid: 10090) |
| >sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/605 (75%), Positives = 524/605 (86%), Gaps = 6/605 (0%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+D+LTRIAIV+ D+CKPKKCRQECKKSCPVV+ GKLCIEVTP +KIA+ISE LCIGCGI
Sbjct: 1 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
C+KKCPF A+ I+NLP +L+K+TTHRY N FKLHRLP+PRPG+VLGLVGTNGIGKSTAL
Sbjct: 61 CIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGK KPNLG++++PPDWQEILTYFRGSELQNYFT+ILED+LKAIIKPQYVD IPKA
Sbjct: 121 KILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAA 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
+G VG +LD+KDE +A +C LDL + +RNV DLSGGELQRFA AVV +Q A+I+MF
Sbjct: 181 KGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAA +RSL+ P+ Y+IVVEHDLSVLDYLSDFICCLYG P AYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
+PFSVREGINIFL G+VPTENLRFRD SL F+VAET E EE++ YKYP M K G
Sbjct: 301 MPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANE--EEVKKMCMYKYPGMKKKMG 358
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
F+L +V GEFTDS+I+VMLGENGTGKTTFIRMLAG LKP D E+P NVSYKPQ
Sbjct: 359 EFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKP----DEGGEVPVLNVSYKPQ 414
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPK +VR LLH+KIRD+YTHPQFV+DVMKPL IE ++DQEV LSGGELQRVAL L
Sbjct: 415 KISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALAL 474
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPAD+YLIDEPSAYLDSEQR++AA+V+KRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 475 CLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIV 534
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
++G PS + VAN+PQ+LL GMN FLS L+ITFRRDP N+RPRINKL+S KD +QK +G+Y
Sbjct: 535 FDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNY 594
Query: 601 YYLDD 605
++LDD
Sbjct: 595 FFLDD 599
|
Antagonizes the binding of 2-5A (5'-phosphorylated 2',5'-linked oligoadenylates) by RNase L through direct interaction with RNase L and therefore inhibits its endoribonuclease activity. May play a central role in the regulation of mRNA turnover. Antagonizes the anti-viral effect of the interferon-regulated 2-5A/RNase L pathway. May act as a chaperone for post-translational events during HIV-1 capsid assembly. Homo sapiens (taxid: 9606) |
| >sp|Q03195|RLI1_YEAST Translation initiation factor RLI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RLI1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/611 (68%), Positives = 506/611 (82%), Gaps = 12/611 (1%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
MSD+ +RIAIVS+D+CKPKKCRQECK+SCPVVKTGKLCIEVTP +KIAFISE LCIGCGI
Sbjct: 1 MSDKNSRIAIVSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPF+AIQIINLP +L+ THRY N+FKLHRLP PRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGK KPNLGRF++PP+WQEI+ YFRGSELQNYFT++LED++KAIIKPQYVD+IP+A+
Sbjct: 121 KILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAI 180
Query: 181 QG---NVGQVLD---QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234
+G VG++L +K D+K + L L V+ R++ LSGGELQRFAI + VQ
Sbjct: 181 KGPVQKVGELLKLRMEKSPEDVKRYIKI-LQLENVLKRDIEKLSGGELQRFAIGMSCVQE 239
Query: 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPG 294
A++YMFDEPSSYLDVKQRL AAQ++RSLL P YVI VEHDLSVLDYLSDF+C +YG P
Sbjct: 240 ADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299
Query: 295 AYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPT 354
YGVVTLP SVREGINIFL G +P ENLRFR E+L FR+A+ ++ + + A + YP+
Sbjct: 300 VYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRA-FSYPS 358
Query: 355 MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFN 414
+ KTQG+F L V EGEF+DS+I+VM+GENGTGKTT I++LAG LKPD +D IP+ N
Sbjct: 359 LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD----IPKLN 414
Query: 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQ 474
VS KPQKI+PKF TVR L +KIR + +PQF +DV+KPL I+ ++DQEV +LSGGELQ
Sbjct: 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQ 474
Query: 475 RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL 534
RVA+ L LG PADIYLIDEPSAYLDSEQRI+ +KVI+RFILH KKTAF+VEHDFIMATYL
Sbjct: 475 RVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534
Query: 535 ADRVIVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQ 594
AD+VIV+EG PS + A AP+SLLTG N FL +L++TFRRDP +FRPRINKLDS D++Q
Sbjct: 535 ADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRINKLDSQMDKEQ 594
Query: 595 KAAGSYYYLDD 605
K++G+Y++LD+
Sbjct: 595 KSSGNYFFLDN 605
|
Component of the multifactor complex (MFC) involved in translation initiation. Required for the binding of MFC to the 40S ribosome. Required for the processing and nuclear export of the 60S and 40S ribosomal subunits. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O60102|RLI1_SCHPO Translation initiation factor rli1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rli1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/608 (65%), Positives = 491/608 (80%), Gaps = 18/608 (2%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
MS+ LTRIAIVS D+C+PKKCRQEC++SCPVV+TGKLCIEV P +IAFISE LCIGCGI
Sbjct: 1 MSESLTRIAIVSEDKCRPKKCRQECRRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPF AI IINLP +L+ + THRY N+FKLHRLP PRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFGAINIINLPTNLESEVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KIL+GK+KPNLGR++NPPDW E++ YFRGSELQN+FT+++EDN+KA+IKPQYVDHIP+A+
Sbjct: 121 KILSGKMKPNLGRYDNPPDWAEVVKYFRGSELQNFFTKVVEDNIKALIKPQYVDHIPRAI 180
Query: 181 QG---NVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEI 237
+ V ++ + + ++ DL +++R VG LSGGELQRFAIA VA Q A++
Sbjct: 181 KTGDKTVSGLIKARANNNNFEEVMDHTDLQNLLNREVGHLSGGELQRFAIAAVATQKADV 240
Query: 238 YMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYG 297
YMFDEPSSYLD+KQRLKA +V+RSLL +YVIVVEHDLSVLDYLSDF+C LYG P YG
Sbjct: 241 YMFDEPSSYLDIKQRLKAGRVIRSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYG 300
Query: 298 VVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVK 357
VVTLP+SVREGINIFL G +PTENLRFR E+LTFR+A+ E + A Y YP V
Sbjct: 301 VVTLPYSVREGINIFLDGHIPTENLRFRSEALTFRLADASDEITA--DRTAEYNYPDHVI 358
Query: 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSY 417
QG+FKL + G F+D++IIV+LGENGTGKTTF + +A ++SD++I S
Sbjct: 359 EQGDFKLTIKSGGFSDAEIIVLLGENGTGKTTFCKWMA--------KNSDLKI-----SM 405
Query: 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVA 477
KPQ I+PKFQ TVR L +KIR ++ + +F S+V KPL I+ ++DQEV+NLSGGELQRVA
Sbjct: 406 KPQTIAPKFQGTVRMLFLKKIRAAFLNGKFQSEVCKPLSIDNIIDQEVLNLSGGELQRVA 465
Query: 478 LCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADR 537
+CL LG PAD+YLIDEPSAYLDSEQRI+A+KVI+RFI++++KTAF+VEHDFIMATYLADR
Sbjct: 466 ICLALGMPADVYLIDEPSAYLDSEQRIIASKVIRRFIVNSRKTAFIVEHDFIMATYLADR 525
Query: 538 VIVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAA 597
VI++EGQPS D N PQSLLTGMN FL +LD+TFRRDP RPRINK DS D++QK A
Sbjct: 526 VILFEGQPSRDARCNPPQSLLTGMNTFLKNLDVTFRRDPNTLRPRINKFDSQMDQEQKNA 585
Query: 598 GSYYYLDD 605
G+Y++L++
Sbjct: 586 GNYFFLEN 593
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q58129|Y719_METJA Uncharacterized ABC transporter ATP-binding protein MJ0719 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0719 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 563 bits (1451), Expect = e-159, Method: Compositional matrix adjust.
Identities = 293/607 (48%), Positives = 398/607 (65%), Gaps = 24/607 (3%)
Query: 5 LTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKK 64
R+AI+ DRC+PKKC EC K CP V+ G+ IE+ ISE LC GCGICVK+
Sbjct: 12 FMRLAIIDYDRCQPKKCSMECMKYCPGVRMGEKTIEIDENTGKPVISEVLCSGCGICVKR 71
Query: 65 CPFEAIQIINLPKDLDKD-TTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKIL 123
CPF+AI II LP++L +D H YG N FKL L +PR G V+G++G NGIGKST L+IL
Sbjct: 72 CPFKAISIIGLPEELSEDKIVHSYGQNRFKLFGLVIPRDG-VVGIIGQNGIGKSTVLRIL 130
Query: 124 AGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGN 183
AG+L PNLG+ + P++ +++ YFRG+ELQ YF ++ +KAI K QYVD +PK V+G
Sbjct: 131 AGELIPNLGKHDKEPNYDDVIKYFRGTELQEYFEKLKNKGVKAIHKVQYVDILPKVVKGK 190
Query: 184 VGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEP 243
VG +L + DE+ ++ L+L ++DR + LSGGELQR AIA ++N +IY FDEP
Sbjct: 191 VGDLLKKVDEKGKFDEVVEKLELKNILDRELSQLSGGELQRVAIAAAYLRNGDIYFFDEP 250
Query: 244 SSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPF 303
SS+LD++QR AA+++R L + V+VVEHDL VLDYLSD+I +YG P AYG+V++P
Sbjct: 251 SSWLDIRQRFNAARLIREL----NKVVVVEHDLIVLDYLSDYIHIMYGVPSAYGIVSMPK 306
Query: 304 SVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYAR---YKYPTMVKTQG 360
SVR GIN +L G + EN+RFR E + F E I+ R Y +M KT G
Sbjct: 307 SVRVGINEYLYGELREENIRFRKEPIIF-------EKRAVIDFKNRPILLSYSSMKKTLG 359
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
+FKL+V G ++I +LG NG GKTTF+++LAG++KPD E ++ + VSYKPQ
Sbjct: 360 DFKLEVSGGTIYKGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGEVIKEGDIKVSYKPQ 417
Query: 421 KISPKFQSTVRHLLHQ--KIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVAL 478
I+P + TV LL I SY + S+++ PL +E+L+D+EV LSGGELQRVA+
Sbjct: 418 YITPDYDGTVEDLLSSITNIHTSY----YKSEIINPLQLEKLLDREVRELSGGELQRVAI 473
Query: 479 CLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRV 538
CL + ADIYL+DEPSA+LD EQR+ +KVI+R + FVV+HD + Y++DR
Sbjct: 474 AACLSRDADIYLLDEPSAFLDVEQRLRVSKVIRRIADEKEAGMFVVDHDILFQDYISDRF 533
Query: 539 IVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAG 598
IV+ G+P V ++P + G N FL + ITFRRDP RPR NK S +D QK G
Sbjct: 534 IVFSGEPGKFGVGSSPMNKRDGANKFLKEMQITFRRDPETGRPRANKEGSQRDIMQKEKG 593
Query: 599 SYYYLDD 605
YYY+D+
Sbjct: 594 EYYYVDE 600
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) |
| >sp|Q9M0D0|AB3E_ARATH ABC transporter E family member 3 OS=Arabidopsis thaliana GN=ABCE3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 225 bits (573), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 118/175 (67%), Positives = 138/175 (78%), Gaps = 2/175 (1%)
Query: 355 MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDV-EIPEF 413
M T+G+FKL++ +GEFTDSQIIVMLGENGTGKTTFI+MLAG E S V EIP+F
Sbjct: 1 MTITRGDFKLRLNQGEFTDSQIIVMLGENGTGKTTFIKMLAGSKLDIDEEGSQVHEIPQF 60
Query: 414 NVSYKPQKISP-KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGE 472
+VSYK Q +S KF+ TVR L+H+KI ++Y QFVSDVMKPL IE+LMD+ LSGGE
Sbjct: 61 SVSYKNQHMSNRKFEITVRDLIHRKIPNAYAEHQFVSDVMKPLKIEELMDKSFNKLSGGE 120
Query: 473 LQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527
QRVAL LCLGK ADIYLIDEPSA+LDSEQRI+A+KVIKRFIL KK AF H+
Sbjct: 121 KQRVALALCLGKSADIYLIDEPSAFLDSEQRIIASKVIKRFILQMKKAAFARFHN 175
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q73R11|Y282_TREDE Putative ABC transporter ATP-binding protein TDE_0282 OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=TDE_0282 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 111/470 (23%), Positives = 212/470 (45%), Gaps = 49/470 (10%)
Query: 97 LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF 156
L +P+ GQ + L G +G GK+T +++ G L P+ F + I+ E
Sbjct: 24 LHIPK-GQCVLLCGASGCGKTTLTRLING-LIPHF--FEGEFSGEAIINGMNSEEAD--- 76
Query: 157 TRILEDNLKAII---KPQY--VDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVID 211
L D++ + + Q+ D + V G + L + + DL + + +
Sbjct: 77 IAQLSDSVGTVFQNPRTQFFNTDTDSEIVFGLENRGLPPEQLLSRLEKVTEDLQIQNLRE 136
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
R++ +LSGGE Q+ A A V +I++ DEPSS +D + +++++ + +I+
Sbjct: 137 RSIFELSGGEKQKIAFASVYAAAPDIFVLDEPSSNMDYHSIKELSELIKKIKLQGKTIII 196
Query: 272 VEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTF 331
EH + L ++D + + G + ++ +++ A ++++ R +L
Sbjct: 197 AEHRIWYLMDIADRVIFMEN-----GKIAHDMDIKTFVDLPEA---QIKSMKLRCRNLAD 248
Query: 332 RVAETPQESAEEIETYARYKYPT---MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKT 388
AET S + ++ + + VK L+ + T +II + GENG GKT
Sbjct: 249 VKAETVNVSPDVSVSFGGHTFAVKDITVKLGHTSVLQDISFSTTGGEIIAITGENGAGKT 308
Query: 389 TFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLL-----HQKIRDS-Y 442
T R L GL + + ++S+ +S K + +++ HQ DS Y
Sbjct: 309 TLARTLCGLTQEAA----------GSISFDGNPLSRKMRRERSYMVMQDVGHQLFTDSVY 358
Query: 443 THPQF---------VSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493
+ + +V+ L + +L ++ ++LSGG+ QR+A+ + + DI + DE
Sbjct: 359 AECRLGIKDLPDPAIDEVLTELSLNRLKERHPLSLSGGQKQRLAVAVSVLCGKDILIFDE 418
Query: 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543
P++ LD + A ++IKR + KKT V+ HD + RV++ G
Sbjct: 419 PTSGLDLKSMQEAGRIIKR-LADDKKTVIVITHDIEFIKTICSRVLILSG 467
|
Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system. Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) (taxid: 243275) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q897I2|Y753_CLOTE Putative ABC transporter ATP-binding protein CTC_00753 OS=Clostridium tetani (strain Massachusetts / E88) GN=CTC_00753 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 171/375 (45%), Gaps = 68/375 (18%)
Query: 198 ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQ 257
+++ + L LN++ D+ ++SGGE QR AIA V + +I FDEP S LD + A +
Sbjct: 24 SEVISLLGLNKIRDKQTTEISGGEKQRVAIASVVSMDPQIIAFDEPISQLD---PISAEE 80
Query: 258 VVRSLLRPN----SYVIVVEHDLSVLDYLSDFICCL-------YGKP------------- 293
V+ S+ R N +I+VE L +++D I + G P
Sbjct: 81 VLNSIKRLNRDLGKTIILVEQRLDKCFHMADRIIFMENGEIIGQGTPKNIPENIVNKYHL 140
Query: 294 -------GAYGVVTLPFSVREGINIFLAGFVPTENLRFRD---ESLTFRVAETPQESAEE 343
G+ TLP +V+EG +I N +F+D + L F+ E E
Sbjct: 141 PTITYIFKEAGLQTLPITVKEGRDII-------RNNKFQDLKEDDLKFK------EVVME 187
Query: 344 IETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK--PD 401
IE ++Y K + K+ GE I+ ++GENG GK+T +++AG++
Sbjct: 188 IEKL-NFEYERGYKILKDLSFKLHRGE-----IMTVMGENGAGKSTLFKIIAGMIDKYKG 241
Query: 402 SVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRD--SYT-------HPQFVSDVM 452
V + I + + +KI Q+ + + + + YT + V VM
Sbjct: 242 KVLIDNKNIKSLKLKERIKKIGYLSQNPNDYFGRKTVFEEVGYTLKNIGEYKEEKVEQVM 301
Query: 453 KPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512
K L I L D+ +LSGGE QRVA+ + +I ++DEP+ +D+E + ++IK
Sbjct: 302 KLLNISYLEDKNPRDLSGGEKQRVAIACTIITDPEILILDEPTRGMDAEAKENLGEIIKT 361
Query: 513 FILHAKKTAFVVEHD 527
+ K+ V+ HD
Sbjct: 362 -LAEVGKSIVVITHD 375
|
Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system. Clostridium tetani (strain Massachusetts / E88) (taxid: 212717) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 605 | ||||||
| 296085461 | 625 | unnamed protein product [Vitis vinifera] | 1.0 | 0.968 | 0.970 | 0.0 | |
| 225427605 | 605 | PREDICTED: ABC transporter E family memb | 1.0 | 1.0 | 0.970 | 0.0 | |
| 449465063 | 605 | PREDICTED: ABC transporter E family memb | 1.0 | 1.0 | 0.958 | 0.0 | |
| 147821791 | 599 | hypothetical protein VITISV_021090 [Viti | 0.990 | 1.0 | 0.960 | 0.0 | |
| 148910189 | 605 | unknown [Picea sitchensis] | 1.0 | 1.0 | 0.948 | 0.0 | |
| 224129956 | 603 | predicted protein [Populus trichocarpa] | 0.996 | 1.0 | 0.940 | 0.0 | |
| 356538443 | 606 | PREDICTED: ABC transporter E family memb | 1.0 | 0.998 | 0.930 | 0.0 | |
| 242041649 | 604 | hypothetical protein SORBIDRAFT_01g04202 | 0.998 | 1.0 | 0.927 | 0.0 | |
| 413955821 | 604 | hypothetical protein ZEAMMB73_854523 [Ze | 0.998 | 1.0 | 0.925 | 0.0 | |
| 414866655 | 604 | TPA: hypothetical protein ZEAMMB73_26626 | 0.998 | 1.0 | 0.923 | 0.0 |
| >gi|296085461|emb|CBI29193.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1222 bits (3161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/605 (97%), Positives = 599/605 (99%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+DRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPA+KIAFISEELCIGCGI
Sbjct: 21 MADRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGI 80
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL
Sbjct: 81 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 140
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
K+LAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV
Sbjct: 141 KVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 200
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
QGNVGQVLDQKDERDMK +LC DLDLNQVIDRNVGDLSGGELQRFAIAVVA+QNAEIYMF
Sbjct: 201 QGNVGQVLDQKDERDMKEELCFDLDLNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMF 260
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT
Sbjct: 261 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 320
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGINIFLAGFVPTENLRFR+ESLTF+VAETPQESAEEIETYARYKYPTM KTQG
Sbjct: 321 LPFSVREGINIFLAGFVPTENLRFREESLTFKVAETPQESAEEIETYARYKYPTMTKTQG 380
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
NFKL+VVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ
Sbjct: 381 NFKLRVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 440
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPKFQSTVRHLLHQKIRDSY HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL
Sbjct: 441 KISPKFQSTVRHLLHQKIRDSYMHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 500
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPADIYLIDEPSAYLDSEQRIVA+KVIKRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 501 CLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 560
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
YEGQPSVDC AN PQSLLTGMNLFLSHLDITFRRDPTNFRPRINKL+STKDR+QK+AGSY
Sbjct: 561 YEGQPSVDCTANTPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLESTKDREQKSAGSY 620
Query: 601 YYLDD 605
YYLDD
Sbjct: 621 YYLDD 625
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225427605|ref|XP_002271392.1| PREDICTED: ABC transporter E family member 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1222 bits (3161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/605 (97%), Positives = 599/605 (99%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+DRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPA+KIAFISEELCIGCGI
Sbjct: 1 MADRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
K+LAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV
Sbjct: 121 KVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
QGNVGQVLDQKDERDMK +LC DLDLNQVIDRNVGDLSGGELQRFAIAVVA+QNAEIYMF
Sbjct: 181 QGNVGQVLDQKDERDMKEELCFDLDLNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGINIFLAGFVPTENLRFR+ESLTF+VAETPQESAEEIETYARYKYPTM KTQG
Sbjct: 301 LPFSVREGINIFLAGFVPTENLRFREESLTFKVAETPQESAEEIETYARYKYPTMTKTQG 360
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
NFKL+VVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ
Sbjct: 361 NFKLRVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPKFQSTVRHLLHQKIRDSY HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL
Sbjct: 421 KISPKFQSTVRHLLHQKIRDSYMHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPADIYLIDEPSAYLDSEQRIVA+KVIKRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 481 CLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
YEGQPSVDC AN PQSLLTGMNLFLSHLDITFRRDPTNFRPRINKL+STKDR+QK+AGSY
Sbjct: 541 YEGQPSVDCTANTPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLESTKDREQKSAGSY 600
Query: 601 YYLDD 605
YYLDD
Sbjct: 601 YYLDD 605
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465063|ref|XP_004150248.1| PREDICTED: ABC transporter E family member 2-like [Cucumis sativus] gi|449503574|ref|XP_004162070.1| PREDICTED: ABC transporter E family member 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1212 bits (3135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/605 (95%), Positives = 597/605 (98%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+DRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI
Sbjct: 1 MADRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
K+LAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV
Sbjct: 121 KVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
QGNVGQVL+QKDERDMK +LC DL+LNQVIDRNVGDLSGGELQRFAIAVVA+QNAEIYMF
Sbjct: 181 QGNVGQVLEQKDERDMKQELCHDLELNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAAQV+RSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGINIFLAGFVPTENLRFRDESLTF+VAETPQESAEEIETYARYKYPTM KTQG
Sbjct: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFKVAETPQESAEEIETYARYKYPTMSKTQG 360
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
NFKL+V+EGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE SD+EIPEFNVSYKPQ
Sbjct: 361 NFKLRVIEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEGSDIEIPEFNVSYKPQ 420
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPKFQSTVRHLLHQKIR+SY HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL
Sbjct: 421 KISPKFQSTVRHLLHQKIRESYMHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPADIYLIDEPSAYLDSEQRIVA+KVIKRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 481 CLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
YEGQPSVDC AN PQSLLTGMNLFLSHLDITFRRDPTN+RPRINK+DS KDR+QK+AGSY
Sbjct: 541 YEGQPSVDCTANCPQSLLTGMNLFLSHLDITFRRDPTNYRPRINKVDSAKDREQKSAGSY 600
Query: 601 YYLDD 605
YYLDD
Sbjct: 601 YYLDD 605
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147821791|emb|CAN65893.1| hypothetical protein VITISV_021090 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1199 bits (3102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/605 (96%), Positives = 593/605 (98%), Gaps = 6/605 (0%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+DRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPA+KIAFISEELCIGCGI
Sbjct: 1 MADRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
K+LAGKLKPNLGRFN EILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV
Sbjct: 121 KVLAGKLKPNLGRFN------EILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 174
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
QGNVGQVLDQKDERDMK +LC DLDLNQVIDRNVGDLSGGELQRFAIAVVA+QNAEIYMF
Sbjct: 175 QGNVGQVLDQKDERDMKEELCFDLDLNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMF 234
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT
Sbjct: 235 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 294
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGINIFLAGFVPTENLRFR+ESLTF+VAETPQESAEEIETYARYKYPTM KTQG
Sbjct: 295 LPFSVREGINIFLAGFVPTENLRFREESLTFKVAETPQESAEEIETYARYKYPTMTKTQG 354
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
NFKL+VVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ
Sbjct: 355 NFKLRVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 414
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPKFQSTVRHLLHQKIRDSY HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL
Sbjct: 415 KISPKFQSTVRHLLHQKIRDSYMHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 474
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPADIYLIDEPSAYLDSEQRIVA+KVIKRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 475 CLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 534
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
YEGQPSVDC AN PQSLLTGMNLFLSHLDITFRRDPTNFRPRINKL+STKDR+QK+AGSY
Sbjct: 535 YEGQPSVDCTANTPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLESTKDREQKSAGSY 594
Query: 601 YYLDD 605
YYLDD
Sbjct: 595 YYLDD 599
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148910189|gb|ABR18176.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 1196 bits (3095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/605 (94%), Positives = 595/605 (98%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEV+ A+KIAFISEELCIGCGI
Sbjct: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVSSASKIAFISEELCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
K+LAGKLKPNLGRF+NPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV
Sbjct: 121 KVLAGKLKPNLGRFHNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
QGNVGQVL+QKDERD+K++LCTDLDLNQV+DRNVGDLSGGELQRFAIAVVA+QNAEIYMF
Sbjct: 181 QGNVGQVLEQKDERDIKSELCTDLDLNQVMDRNVGDLSGGELQRFAIAVVAIQNAEIYMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFI CLYGKPGAYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFIFCLYGKPGAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGINIFLAGFVPTENLRFRDESLTF+VAETPQESAEEI++YARYKYPTM KTQG
Sbjct: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFKVAETPQESAEEIKSYARYKYPTMSKTQG 360
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
NFKL V EGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD+V+++DVEIPEFNVSYKPQ
Sbjct: 361 NFKLNVKEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDTVDNTDVEIPEFNVSYKPQ 420
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPKFQSTVRHLLHQKIRDSYTHPQF SDVMKPL IEQLMDQ+VVNLSGGELQRVALCL
Sbjct: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFTSDVMKPLQIEQLMDQDVVNLSGGELQRVALCL 480
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
YEG+PSVDCVAN PQSL TGMNLFLSHLDITFRRDPTN+RPRINKLDSTKDR+QK AGSY
Sbjct: 541 YEGRPSVDCVANTPQSLQTGMNLFLSHLDITFRRDPTNYRPRINKLDSTKDREQKNAGSY 600
Query: 601 YYLDD 605
YYLDD
Sbjct: 601 YYLDD 605
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129956|ref|XP_002328845.1| predicted protein [Populus trichocarpa] gi|222839143|gb|EEE77494.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1189 bits (3075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/605 (94%), Positives = 593/605 (98%), Gaps = 2/605 (0%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
MSDRLTRIAIV+SDRCKPKKCRQECKKSCPVVKTGKLCIEVTPA+KIAFISEELCIGCGI
Sbjct: 1 MSDRLTRIAIVTSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
C KCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 C--KCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 118
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
K+LAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIP+AV
Sbjct: 119 KVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPRAV 178
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
QGNVGQVLDQKDERD KA+LC DL+LNQVIDRNVGDLSGGELQRFAIAVVA+QNAEIYMF
Sbjct: 179 QGNVGQVLDQKDERDKKAELCRDLELNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMF 238
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAAQV+RSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT
Sbjct: 239 DEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 298
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGINIFL+GFVPTENLRFRDESLTF+VAETPQE+AEEI+TYARYKYPTM KTQG
Sbjct: 299 LPFSVREGINIFLSGFVPTENLRFRDESLTFKVAETPQENAEEIQTYARYKYPTMSKTQG 358
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
NFKL+VVEGEFTDSQI+VMLGENGTGKTTFIRMLAGLLKPD+VE S+ EIPEFNVSYKPQ
Sbjct: 359 NFKLRVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTVEGSEAEIPEFNVSYKPQ 418
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPKFQ +VR LLH KIRDSY HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL
Sbjct: 419 KISPKFQFSVRQLLHSKIRDSYMHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 478
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPADIYLIDEPSAYLDSEQRIVA+KVIKRFILHAKKTAFVVEHDFIMA+YLADRVIV
Sbjct: 479 CLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMASYLADRVIV 538
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
YEGQPSVDC AN+PQSLLTGMNLFLSHLDITFRRDP+N+RPRINKL+STKDR+QKAAGSY
Sbjct: 539 YEGQPSVDCTANSPQSLLTGMNLFLSHLDITFRRDPSNYRPRINKLESTKDREQKAAGSY 598
Query: 601 YYLDD 605
YYLDD
Sbjct: 599 YYLDD 603
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538443|ref|XP_003537713.1| PREDICTED: ABC transporter E family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1187 bits (3071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/606 (93%), Positives = 595/606 (98%), Gaps = 1/606 (0%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+DRLTRIAIVS+DRCKPKKCRQECKKSCPVV+TG+LCIEVT ++KIAFISEELCIGCGI
Sbjct: 1 MADRLTRIAIVSNDRCKPKKCRQECKKSCPVVRTGRLCIEVTSSSKIAFISEELCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPFEAIQIINLPKDLD+DTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFEAIQIINLPKDLDRDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
K+LAGKLKPNLGRF NPPDWQEILTYFRGSELQNYFTRILED+LKAIIKPQYVDHIPKAV
Sbjct: 121 KVLAGKLKPNLGRFTNPPDWQEILTYFRGSELQNYFTRILEDDLKAIIKPQYVDHIPKAV 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
QGNVGQVLDQKDER+ K +LC DL+LNQVIDRNVGDLSGGELQRFAIAVVA+QNAEIYMF
Sbjct: 181 QGNVGQVLDQKDEREKKEELCADLELNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAAQV+RSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGINIFLAGFVPTENLRFRD+SLTF+VAETPQE+AEE +TYARYKYPTM KTQG
Sbjct: 301 LPFSVREGINIFLAGFVPTENLRFRDDSLTFKVAETPQETAEEAQTYARYKYPTMSKTQG 360
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE-DSDVEIPEFNVSYKP 419
NF+L+V EGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD++E S+VE+PEFNVSYKP
Sbjct: 361 NFRLRVAEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDTIEGGSEVEMPEFNVSYKP 420
Query: 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALC 479
QKISPKFQSTVRHLLHQKIRD+YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALC
Sbjct: 421 QKISPKFQSTVRHLLHQKIRDAYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALC 480
Query: 480 LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 539
LCLGKPADIYLIDEPSAYLDSEQRI+AAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI
Sbjct: 481 LCLGKPADIYLIDEPSAYLDSEQRIIAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 540
Query: 540 VYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGS 599
VYEGQPS+DC+AN PQSLL+GMNLFLSHLDITFRRDPTNFRPRINKLDSTKDR+QK+AGS
Sbjct: 541 VYEGQPSIDCIANTPQSLLSGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDREQKSAGS 600
Query: 600 YYYLDD 605
YYYLDD
Sbjct: 601 YYYLDD 606
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242041649|ref|XP_002468219.1| hypothetical protein SORBIDRAFT_01g042020 [Sorghum bicolor] gi|241922073|gb|EER95217.1| hypothetical protein SORBIDRAFT_01g042020 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1180 bits (3052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/605 (92%), Positives = 592/605 (97%), Gaps = 1/605 (0%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M++RLTRIAIVS D+CKPKKCRQECKKSCPVVKTGKLCIEVT A+K+AFISEELCIGCGI
Sbjct: 1 MAERLTRIAIVSEDKCKPKKCRQECKKSCPVVKTGKLCIEVTSASKLAFISEELCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPF+AI+IINLPKDL+KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFDAIEIINLPKDLEKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
K+LAGKLKPNLGRF NPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV
Sbjct: 121 KVLAGKLKPNLGRFKNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
QGNVGQVL+QKDERDMKA+LC DL+LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF
Sbjct: 181 QGNVGQVLEQKDERDMKAELCVDLELNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAAQV+RSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGINIFLAGFVPTENLRFRDESLTF++AET QESAEEIETY RYKYPTM KTQG
Sbjct: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFKIAET-QESAEEIETYQRYKYPTMSKTQG 359
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
NFKL VVEGEFTDSQI+VMLGENGTGKTTFIRMLAGLLKPD+VE +D+EIPEFNVSYKPQ
Sbjct: 360 NFKLTVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTVEGTDIEIPEFNVSYKPQ 419
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPKFQ+TVRHLLHQKIRDSY HPQFVSDVMKPL IEQLMDQEVVNLSGGELQRVA+CL
Sbjct: 420 KISPKFQNTVRHLLHQKIRDSYMHPQFVSDVMKPLQIEQLMDQEVVNLSGGELQRVAICL 479
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPADIYLIDEPSAYLDSEQRIVA+KVIKRFILHAKKTAF+VEHDFIMATYLAD+VIV
Sbjct: 480 CLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFIVEHDFIMATYLADKVIV 539
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
YEG+PS+DC ANAPQSL++GMN FLSHLDITFRRDPTN+RPRINKLDSTKDR+QK+AGSY
Sbjct: 540 YEGRPSIDCTANAPQSLVSGMNKFLSHLDITFRRDPTNYRPRINKLDSTKDREQKSAGSY 599
Query: 601 YYLDD 605
YYLDD
Sbjct: 600 YYLDD 604
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413955821|gb|AFW88470.1| hypothetical protein ZEAMMB73_854523 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1177 bits (3046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/605 (92%), Positives = 592/605 (97%), Gaps = 1/605 (0%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M++RLTRIAIVS D+CKPKKCRQECKKSCPVVKTGKLCIEVT A+K+AFISEELCIGCGI
Sbjct: 1 MAERLTRIAIVSEDKCKPKKCRQECKKSCPVVKTGKLCIEVTSASKLAFISEELCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPF+AI+IINLPKDL+KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFDAIEIINLPKDLEKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
K+LAGKLKPNLGRF NPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV
Sbjct: 121 KVLAGKLKPNLGRFKNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
QGNVGQVL+QKDERDMKA+LC DL+LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF
Sbjct: 181 QGNVGQVLEQKDERDMKAELCVDLELNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAAQV+RSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGINIFLAGFVPTENLRFRDESLTF++AET QESAEEIETY RYKYPTM KTQG
Sbjct: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFKIAET-QESAEEIETYQRYKYPTMSKTQG 359
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
NFKL VVEGEFTDSQI+VMLGENGTGKTTFIRMLAGLLKPD+VE +D+EIPEFNVSYKPQ
Sbjct: 360 NFKLTVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTVEGTDIEIPEFNVSYKPQ 419
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPKF++TVRHLLHQKIRDSY HPQFVSDVMKPL IEQLMDQEVVNLSGGELQRVA+CL
Sbjct: 420 KISPKFKNTVRHLLHQKIRDSYMHPQFVSDVMKPLQIEQLMDQEVVNLSGGELQRVAICL 479
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPADIYLIDEPSAYLDSEQRIVA+KVIKRFILHAKKTAF+VEHDFIMATYLAD+VIV
Sbjct: 480 CLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFIVEHDFIMATYLADKVIV 539
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
YEG+PS+DC ANAPQSL++GMN FLSHLDITFRRDPTN+RPRINKLDSTKDR+QK+AGSY
Sbjct: 540 YEGRPSIDCSANAPQSLVSGMNKFLSHLDITFRRDPTNYRPRINKLDSTKDREQKSAGSY 599
Query: 601 YYLDD 605
YYLDD
Sbjct: 600 YYLDD 604
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414866655|tpg|DAA45212.1| TPA: hypothetical protein ZEAMMB73_266266 [Zea mays] gi|414866656|tpg|DAA45213.1| TPA: hypothetical protein ZEAMMB73_266266 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1176 bits (3042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/605 (92%), Positives = 592/605 (97%), Gaps = 1/605 (0%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M++RLTRIAIVS D+CKPKKCRQECKKSCPVVKTGKLCIEVT A+K+AFISEELCIGCGI
Sbjct: 1 MAERLTRIAIVSEDKCKPKKCRQECKKSCPVVKTGKLCIEVTSASKLAFISEELCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPF+AI+IINLPKDL+KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFDAIEIINLPKDLEKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
K+LAGKLKPNLGRF NPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV
Sbjct: 121 KVLAGKLKPNLGRFKNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
QGNVGQVL+QKDERDMK++LC DL+LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF
Sbjct: 181 QGNVGQVLEQKDERDMKSELCVDLELNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGINIFLAGFVPTENLRFRDESLTF++AET QE+AEEIETY RYKYPTM KTQG
Sbjct: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFKIAET-QENAEEIETYQRYKYPTMSKTQG 359
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
NFKL VVEGEFTDSQI+VMLGENGTGKTTFIRMLAGLLKPD+VE +D+EIPEFNVSYKPQ
Sbjct: 360 NFKLTVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTVEGTDIEIPEFNVSYKPQ 419
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPKFQ+TVRHLLHQKIRDSY HPQFVSDVMKPL IEQLMDQEVVNLSGGELQRVA+CL
Sbjct: 420 KISPKFQNTVRHLLHQKIRDSYMHPQFVSDVMKPLQIEQLMDQEVVNLSGGELQRVAICL 479
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPADIYLIDEPSAYLDSEQRIVA+KVIKRFILHAKKTAF+VEHDFIMATYLAD+VIV
Sbjct: 480 CLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFIVEHDFIMATYLADKVIV 539
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
YEG+PS+DC ANAPQSL++GMN FLSHLDITFRRDPTN+RPRINKL+STKDR+QK+AGSY
Sbjct: 540 YEGRPSIDCTANAPQSLVSGMNKFLSHLDITFRRDPTNYRPRINKLESTKDREQKSAGSY 599
Query: 601 YYLDD 605
YYLDD
Sbjct: 600 YYLDD 604
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 605 | ||||||
| TAIR|locus:2134761 | 605 | ABCE2 "ATP-binding cassette E2 | 1.0 | 1.0 | 0.919 | 3.5e-304 | |
| TAIR|locus:2091506 | 603 | ABCE1 "ATP-binding cassette E1 | 0.996 | 1.0 | 0.793 | 5.9e-263 | |
| UNIPROTKB|P61221 | 599 | ABCE1 "ATP-binding cassette su | 0.990 | 1.0 | 0.753 | 2.4e-250 | |
| MGI|MGI:1195458 | 599 | Abce1 "ATP-binding cassette, s | 0.990 | 1.0 | 0.753 | 2.4e-250 | |
| RGD|1305301 | 599 | Abce1 "ATP-binding cassette, s | 0.990 | 1.0 | 0.753 | 2.4e-250 | |
| UNIPROTKB|E2R642 | 599 | ABCE1 "Uncharacterized protein | 0.990 | 1.0 | 0.753 | 3.1e-250 | |
| UNIPROTKB|A4IFE6 | 599 | ABCE1 "ABCE1 protein" [Bos tau | 0.990 | 1.0 | 0.752 | 1.7e-249 | |
| UNIPROTKB|F6X725 | 600 | ABCE1 "Uncharacterized protein | 0.990 | 0.998 | 0.752 | 2.7e-249 | |
| FB|FBgn0086706 | 611 | pix "pixie" [Drosophila melano | 0.986 | 0.977 | 0.747 | 7.3e-249 | |
| UNIPROTKB|F1RS49 | 599 | ABCE1 "Uncharacterized protein | 0.990 | 1.0 | 0.748 | 1.5e-248 |
| TAIR|locus:2134761 ABCE2 "ATP-binding cassette E2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2919 (1032.6 bits), Expect = 3.5e-304, P = 3.5e-304
Identities = 556/605 (91%), Positives = 586/605 (96%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+DRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVT +K+AFISEELCIGCGI
Sbjct: 1 MADRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTVGSKLAFISEELCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPFEAIQIINLP+DL+KDTTHRYG NTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFEAIQIINLPRDLEKDTTHRYGANTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGKLKPNLGRF +PPDWQEILT+FRGSELQNYFTRILEDNLKAIIKPQYVDHIP+AV
Sbjct: 121 KILAGKLKPNLGRFTSPPDWQEILTHFRGSELQNYFTRILEDNLKAIIKPQYVDHIPRAV 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
+GNVG+VLDQKDERD KA+LC DL+LNQVIDR+V +LSGGELQRFAIAVVA+QNAEIYMF
Sbjct: 181 KGNVGEVLDQKDERDKKAELCADLELNQVIDRDVENLSGGELQRFAIAVVAIQNAEIYMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGINIFLAGFVPTENLRFRDESLTF+VAETPQESAEEI++YARYKYPTM KTQG
Sbjct: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFKVAETPQESAEEIQSYARYKYPTMTKTQG 360
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
NF+L+V EGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD E D EIPEFNVSYKPQ
Sbjct: 361 NFRLRVSEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDDTEGPDREIPEFNVSYKPQ 420
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPKFQ++VRHLLHQKIRDSY HPQF+SDVMKPL IEQLMDQEVVNLSGGELQRVAL L
Sbjct: 421 KISPKFQNSVRHLLHQKIRDSYMHPQFMSDVMKPLQIEQLMDQEVVNLSGGELQRVALTL 480
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPADIYLIDEPSAYLDSEQRIVA+KVIKRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 481 CLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
YEGQPS+DC AN PQSLL+GMNLFLSHL+ITFRRDPTNFRPRINKL+STKDR+QK+AGSY
Sbjct: 541 YEGQPSIDCTANCPQSLLSGMNLFLSHLNITFRRDPTNFRPRINKLESTKDREQKSAGSY 600
Query: 601 YYLDD 605
YYLDD
Sbjct: 601 YYLDD 605
|
|
| TAIR|locus:2091506 ABCE1 "ATP-binding cassette E1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2530 (895.7 bits), Expect = 5.9e-263, P = 5.9e-263
Identities = 480/605 (79%), Positives = 540/605 (89%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
MSDRLTRIAIVS DRCKPKKCRQECKKSCPVVKTGKLCIEV +K AFISEELCIGCGI
Sbjct: 1 MSDRLTRIAIVSEDRCKPKKCRQECKKSCPVVKTGKLCIEVGSTSKSAFISEELCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPFEAIQIINLPKDL KDTTHRYG N FKLHRLP+PRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFEAIQIINLPKDLAKDTTHRYGANGFKLHRLPIPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGKLKPNLGRFN PPDW+EILT+FRGSELQ+YF R++E+NLK IKPQ+VD+I + V
Sbjct: 121 KILAGKLKPNLGRFNTPPDWEEILTHFRGSELQSYFIRVVEENLKTAIKPQHVDYIKEVV 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
+GN+G++L++ DER + ++C D++LNQV++R +SGGELQRFAIA V V+ A+IYMF
Sbjct: 181 RGNLGKMLEKLDERGLMEEICADMELNQVLEREARQVSGGELQRFAIAAVFVKKADIYMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDV+QRLKAAQV+RSLLR +SYVIVVEHDLSVLDYLSDF+CCLYGKPGAYGVVT
Sbjct: 241 DEPSSYLDVRQRLKAAQVIRSLLRHDSYVIVVEHDLSVLDYLSDFVCCLYGKPGAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
LPFSVREGIN+FLAGF+PTENLRFRDESLTFRV+ET QE+ E+++YARYKYP M K G
Sbjct: 301 LPFSVREGINVFLAGFIPTENLRFRDESLTFRVSETTQENDGEVKSYARYKYPNMTKQLG 360
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
+FKL+V+EGEFTDSQIIVMLGENGTGKTTFIRMLAG + E EIPEFNVSYKPQ
Sbjct: 361 DFKLEVMEGEFTDSQIIVMLGENGTGKTTFIRMLAGAFPRE--EGVQSEIPEFNVSYKPQ 418
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
K + TVR LLH KIRD+ HPQF+SDV++PL IEQLMDQ V LSGGE QRVA+ L
Sbjct: 419 GNDSKRECTVRQLLHDKIRDACAHPQFMSDVIRPLQIEQLMDQVVKTLSGGEKQRVAITL 478
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPADIYLIDEPSA+LDSEQRI A+KVIKRFILHAKKTAF+VEHDFIMATYLADRVIV
Sbjct: 479 CLGKPADIYLIDEPSAHLDSEQRITASKVIKRFILHAKKTAFIVEHDFIMATYLADRVIV 538
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
YEGQP+V C+A++PQSLL+GMN FLSHL+ITFRRDPTNFRPRINKL+S KD++QK AGSY
Sbjct: 539 YEGQPAVKCIAHSPQSLLSGMNHFLSHLNITFRRDPTNFRPRINKLESIKDKEQKTAGSY 598
Query: 601 YYLDD 605
YYLDD
Sbjct: 599 YYLDD 603
|
|
| UNIPROTKB|P61221 ABCE1 "ATP-binding cassette sub-family E member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2411 (853.8 bits), Expect = 2.4e-250, P = 2.4e-250
Identities = 456/605 (75%), Positives = 525/605 (86%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+D+LTRIAIV+ D+CKPKKCRQECKKSCPVV+ GKLCIEVTP +KIA+ISE LCIGCGI
Sbjct: 1 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
C+KKCPF A+ I+NLP +L+K+TTHRY N FKLHRLP+PRPG+VLGLVGTNGIGKSTAL
Sbjct: 61 CIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGK KPNLG++++PPDWQEILTYFRGSELQNYFT+ILED+LKAIIKPQYVD IPKA
Sbjct: 121 KILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAA 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
+G VG +LD+KDE +A +C LDL + +RNV DLSGGELQRFA AVV +Q A+I+MF
Sbjct: 181 KGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAA +RSL+ P+ Y+IVVEHDLSVLDYLSDFICCLYG P AYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
+PFSVREGINIFL G+VPTENLRFRD SL F+VAET E EE++ YKYP M K G
Sbjct: 301 MPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANE--EEVKKMCMYKYPGMKKKMG 358
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
F+L +V GEFTDS+I+VMLGENGTGKTTFIRMLAG LKPD E E+P NVSYKPQ
Sbjct: 359 EFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPD--EGG--EVPVLNVSYKPQ 414
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPK +VR LLH+KIRD+YTHPQFV+DVMKPL IE ++DQEV LSGGELQRVAL L
Sbjct: 415 KISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALAL 474
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPAD+YLIDEPSAYLDSEQR++AA+V+KRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 475 CLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIV 534
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
++G PS + VAN+PQ+LL GMN FLS L+ITFRRDP N+RPRINKL+S KD +QK +G+Y
Sbjct: 535 FDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNY 594
Query: 601 YYLDD 605
++LDD
Sbjct: 595 FFLDD 599
|
|
| MGI|MGI:1195458 Abce1 "ATP-binding cassette, sub-family E (OABP), member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 2411 (853.8 bits), Expect = 2.4e-250, P = 2.4e-250
Identities = 456/605 (75%), Positives = 525/605 (86%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+D+LTRIAIV+ D+CKPKKCRQECKKSCPVV+ GKLCIEVTP +KIA+ISE LCIGCGI
Sbjct: 1 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
C+KKCPF A+ I+NLP +L+K+TTHRY N FKLHRLP+PRPG+VLGLVGTNGIGKSTAL
Sbjct: 61 CIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGK KPNLG++++PPDWQEILTYFRGSELQNYFT+ILED+LKAIIKPQYVD IPKA
Sbjct: 121 KILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAA 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
+G VG +LD+KDE +A +C LDL + +RNV DLSGGELQRFA AVV +Q A+I+MF
Sbjct: 181 KGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAA +RSL+ P+ Y+IVVEHDLSVLDYLSDFICCLYG P AYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
+PFSVREGINIFL G+VPTENLRFRD SL F+VAET E EE++ YKYP M K G
Sbjct: 301 MPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANE--EEVKKMCMYKYPGMKKKMG 358
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
F+L +V GEFTDS+I+VMLGENGTGKTTFIRMLAG LKPD E E+P NVSYKPQ
Sbjct: 359 EFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPD--EGG--EVPVLNVSYKPQ 414
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPK +VR LLH+KIRD+YTHPQFV+DVMKPL IE ++DQEV LSGGELQRVAL L
Sbjct: 415 KISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALAL 474
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPAD+YLIDEPSAYLDSEQR++AA+V+KRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 475 CLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIV 534
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
++G PS + VAN+PQ+LL GMN FLS L+ITFRRDP N+RPRINKL+S KD +QK +G+Y
Sbjct: 535 FDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNY 594
Query: 601 YYLDD 605
++LDD
Sbjct: 595 FFLDD 599
|
|
| RGD|1305301 Abce1 "ATP-binding cassette, subfamily E (OABP), member 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2411 (853.8 bits), Expect = 2.4e-250, P = 2.4e-250
Identities = 456/605 (75%), Positives = 525/605 (86%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+D+LTRIAIV+ D+CKPKKCRQECKKSCPVV+ GKLCIEVTP +KIA+ISE LCIGCGI
Sbjct: 1 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
C+KKCPF A+ I+NLP +L+K+TTHRY N FKLHRLP+PRPG+VLGLVGTNGIGKSTAL
Sbjct: 61 CIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGK KPNLG++++PPDWQEILTYFRGSELQNYFT+ILED+LKAIIKPQYVD IPKA
Sbjct: 121 KILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAA 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
+G VG +LD+KDE +A +C LDL + +RNV DLSGGELQRFA AVV +Q A+I+MF
Sbjct: 181 KGTVGSILDRKDETKTQAVVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAA +RSL+ P+ Y+IVVEHDLSVLDYLSDFICCLYG P AYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
+PFSVREGINIFL G+VPTENLRFRD SL F+VAET E EE++ YKYP M K G
Sbjct: 301 MPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANE--EEVKKMCMYKYPGMKKKMG 358
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
F+L +V GEFTDS+I+VMLGENGTGKTTFIRMLAG LKPD E E+P NVSYKPQ
Sbjct: 359 EFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPD--EGG--EVPVLNVSYKPQ 414
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPK +VR LLH+KIRD+YTHPQFV+DVMKPL IE ++DQEV LSGGELQRVAL L
Sbjct: 415 KISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALAL 474
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPAD+YLIDEPSAYLDSEQR++AA+V+KRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 475 CLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIV 534
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
++G PS + VAN+PQ+LL GMN FLS L+ITFRRDP N+RPRINKL+S KD +QK +G+Y
Sbjct: 535 FDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNY 594
Query: 601 YYLDD 605
++LDD
Sbjct: 595 FFLDD 599
|
|
| UNIPROTKB|E2R642 ABCE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 2410 (853.4 bits), Expect = 3.1e-250, P = 3.1e-250
Identities = 456/605 (75%), Positives = 525/605 (86%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+D+LTRIAIV+ D+CKPKKCRQECKKSCPVV+ GKLCIEVTP +KIA+ISE LCIGCGI
Sbjct: 1 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
C+KKCPF A+ I+NLP +L+K+TTHRY N FKLHRLP+PRPG+VLGLVGTNGIGKSTAL
Sbjct: 61 CIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGK KPNLG++++PPDWQEILTYFRGSELQNYFT+ILED+LKAIIKPQYVD IPKA
Sbjct: 121 KILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAA 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
+G VG +LD+KDE +A +C LDL + +RNV DLSGGELQRFA AVV +Q A+I+MF
Sbjct: 181 KGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAA +RSL+ P+ Y+IVVEHDLSVLDYLSDFICCLYG P AYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
+PFSVREGINIFL G+VPTENLRFRD SL F+VAET E EE++ YKYP M K G
Sbjct: 301 MPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANE--EEVKKMCMYKYPGMKKKMG 358
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
F+L +V GEFTDS+I+VMLGENGTGKTTFIRMLAG LKPD E E+P NVSYKPQ
Sbjct: 359 EFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPD--EGG--EVPVLNVSYKPQ 414
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPK +VR LLH+KIRD+YTHPQFV+DVMKPL IE ++DQEV LSGGELQRVAL L
Sbjct: 415 KISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALAL 474
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPAD+YLIDEPSAYLDSEQR++AA+V+KRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 475 CLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIV 534
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
++G PS + VAN+PQ+LL GMN FLS L+ITFRRDP N+RPRINKL+S KD +QK +G+Y
Sbjct: 535 FDGIPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNY 594
Query: 601 YYLDD 605
++LDD
Sbjct: 595 FFLDD 599
|
|
| UNIPROTKB|A4IFE6 ABCE1 "ABCE1 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2403 (851.0 bits), Expect = 1.7e-249, P = 1.7e-249
Identities = 455/605 (75%), Positives = 524/605 (86%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+D+LTRIAIV+ D+CKPKKCRQECKKSCPVV+ GKLCIEVT +KIA+ISE LCIGCGI
Sbjct: 1 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTAQSKIAWISETLCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
C+KKCPF A+ I+NLP +L+K+TTHRY N FKLHRLP+PRPG+VLGLVGTNGIGKSTAL
Sbjct: 61 CIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGK KPNLG++++PPDWQEILTYFRGSELQNYFT+ILED+LKAIIKPQYVD IPKA
Sbjct: 121 KILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAA 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
+G VG +LD+KDE +A +C LDL + +RNV DLSGGELQRFA AVV +Q A+I+MF
Sbjct: 181 KGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAA +RSL+ P+ Y+IVVEHDLSVLDYLSDFICCLYG P AYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
+PFSVREGINIFL G+VPTENLRFRD SL F+VAET E EE++ YKYP M K G
Sbjct: 301 MPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANE--EEVKKMCMYKYPGMKKKMG 358
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
F+L +V GEFTDS+I+VMLGENGTGKTTFIRMLAG LKPD E E+P NVSYKPQ
Sbjct: 359 EFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPD--EGG--EVPVLNVSYKPQ 414
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPK +VR LLH+KIRD+YTHPQFV+DVMKPL IE ++DQEV LSGGELQRVAL L
Sbjct: 415 KISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALAL 474
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPAD+YLIDEPSAYLDSEQR++AA+V+KRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 475 CLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIV 534
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
++G PS + VAN+PQ+LL GMN FLS L+ITFRRDP N+RPRINKL+S KD +QK +G+Y
Sbjct: 535 FDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNY 594
Query: 601 YYLDD 605
++LDD
Sbjct: 595 FFLDD 599
|
|
| UNIPROTKB|F6X725 ABCE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 2401 (850.3 bits), Expect = 2.7e-249, P = 2.7e-249
Identities = 456/606 (75%), Positives = 525/606 (86%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+D+LTRIAIV+ D+CKPKKCRQECKKSCPVV+ GKLCIEVTP +KIA+ISE LCIGCGI
Sbjct: 1 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
C+KKCPF A+ I+NLP +L+K+TTHRY N FKLHRLP+PRPG+VLGLVGTNGIGKSTAL
Sbjct: 61 CIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGK KPNLG++++PPDWQEILTYFRGSELQNYFT+ILED+LKAIIKPQYVD IPKA
Sbjct: 121 KILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAA 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
+G VG +LD+KDE +A +C LDL + +RNV DLSGGELQRFA AVV +Q A+I+MF
Sbjct: 181 KGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAA +RSL+ P+ Y+IVVEHDLSVLDYLSDFICCLYG P AYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
+PFSVREGINIFL G+VPTENLRFRD SL F+VAET E EE++ YKYP M K G
Sbjct: 301 MPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANE--EEVKKMCMYKYPGMKKKMG 358
Query: 361 NFKLKVVEGEFTDSQIIVMLGEN-GTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP 419
F+L +V GEFTDS+I+VMLGEN GTGKTTFIRMLAG LKPD E E+P NVSYKP
Sbjct: 359 EFELAIVAGEFTDSEIMVMLGENAGTGKTTFIRMLAGRLKPD--EGG--EVPVLNVSYKP 414
Query: 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALC 479
QKISPK +VR LLH+KIRD+YTHPQFV+DVMKPL IE ++DQEV LSGGELQRVAL
Sbjct: 415 QKISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALA 474
Query: 480 LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 539
LCLGKPAD+YLIDEPSAYLDSEQR++AA+V+KRFILHAKKTAFVVEHDFIMATYLADRVI
Sbjct: 475 LCLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVI 534
Query: 540 VYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGS 599
V++G PS + VAN+PQ+LL GMN FLS L+ITFRRDP N+RPRINKL+S KD +QK +G+
Sbjct: 535 VFDGIPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGN 594
Query: 600 YYYLDD 605
Y++LDD
Sbjct: 595 YFFLDD 600
|
|
| FB|FBgn0086706 pix "pixie" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2397 (848.8 bits), Expect = 7.3e-249, P = 7.3e-249
Identities = 451/603 (74%), Positives = 520/603 (86%)
Query: 3 DRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICV 62
D+ TRIAIVS D+CKPK+CRQECKK+CPVV+ GKLCIEVTP +KIA +SEELCIGCGICV
Sbjct: 11 DKQTRIAIVSDDKCKPKRCRQECKKTCPVVRMGKLCIEVTPTSKIASLSEELCIGCGICV 70
Query: 63 KKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKI 122
KKCPFEAI IINLP +L+K TTHRY N+FKLHRLP+PRPG+VLGLVG NGIGKSTALKI
Sbjct: 71 KKCPFEAITIINLPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKI 130
Query: 123 LAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG 182
LAGK KPNLG++ NPPDW EIL+YFRGSELQNYFT+ILEDNLKA++KPQYVD IPKAV+G
Sbjct: 131 LAGKQKPNLGKYANPPDWTEILSYFRGSELQNYFTKILEDNLKALVKPQYVDQIPKAVRG 190
Query: 183 NVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDE 242
VG +LD+KDER+++ +C LDL+ + DR + LSGGELQRFAIA+V +QNA+I+MFDE
Sbjct: 191 AVGDLLDKKDERELQTKICEMLDLSHIRDREIAQLSGGELQRFAIAMVCIQNADIFMFDE 250
Query: 243 PSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLP 302
PSSYLDVKQRL AA +RSLL P ++IVVEHDLSVLDYLSDFICCLYG PG YGVVT+P
Sbjct: 251 PSSYLDVKQRLNAALTIRSLLHPTKFIIVVEHDLSVLDYLSDFICCLYGVPGCYGVVTMP 310
Query: 303 FSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNF 362
FSVREGINIFL GFVPTEN+RFR ESLTF+V+E+ E EEI+ Y YP MVKT G F
Sbjct: 311 FSVREGINIFLDGFVPTENMRFRTESLTFKVSESATE--EEIKRMNHYVYPAMVKTLGKF 368
Query: 363 KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKI 422
+L V +G F+DS+I+V+LGENGTGKTTFIRMLAG L+PD +VE+P N+SYKPQKI
Sbjct: 369 ELTVEKGHFSDSEILVLLGENGTGKTTFIRMLAGNLQPDG----EVELPMLNISYKPQKI 424
Query: 423 SPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCL 482
SPKFQ+ VRHLLH KIRD+Y HPQF++DVMKP+ IE++MDQEV NLSGGELQRVAL LCL
Sbjct: 425 SPKFQNHVRHLLHDKIRDAYVHPQFIADVMKPMKIEEIMDQEVQNLSGGELQRVALVLCL 484
Query: 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542
GKPAD+YLIDEPSAYLDSEQR+VAAKVIKR+ILHAKKT FVVEHDFIMATYLADRVIV E
Sbjct: 485 GKPADVYLIDEPSAYLDSEQRLVAAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVIE 544
Query: 543 GQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYY 602
GQPSV A +PQSLL GMN FL L ITFRRDP NFRPRINK +S KD +QK +G +++
Sbjct: 545 GQPSVKTTAFSPQSLLNGMNRFLELLGITFRRDPNNFRPRINKNNSVKDTEQKRSGQFFF 604
Query: 603 LDD 605
L+D
Sbjct: 605 LED 607
|
|
| UNIPROTKB|F1RS49 ABCE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 2394 (847.8 bits), Expect = 1.5e-248, P = 1.5e-248
Identities = 453/605 (74%), Positives = 524/605 (86%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
M+D+LTRIAIV+ D+CKPKKCRQECKKSCPVV+ GKLCIEVTP +KIA+ISE LCIGCGI
Sbjct: 1 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
C+KKCPF A+ I+NLP +L+K+TTHRY N FKLHRLP+PRPG+VLGLVGTNGIGKSTAL
Sbjct: 61 CIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGK KPNLG++++PPDWQEILTYFRGSELQNYFT+ILED+LKAIIKPQYVD IPKA
Sbjct: 121 KILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAA 180
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
+G VG +LD+KDE +A +C LDL + +RNV DLSGGELQRFA AVV +Q A+I+MF
Sbjct: 181 KGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMF 240
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT 300
DEPSSYLDVKQRLKAA +RSL+ P+ Y+IVVEHDLSVLDYLSDFICCLYG P AYGVVT
Sbjct: 241 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT 300
Query: 301 LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG 360
+PFSVREGINIFL G+VPTENLRFRD SL F+VAET E EE++ YKYP M K G
Sbjct: 301 MPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANE--EEVKKMCMYKYPGMKKKMG 358
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
F+L +V GEFTDS+I+VMLGENGTGKTTFIRMLAG LKPD E E+P NVSYKPQ
Sbjct: 359 EFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPD--EGG--EVPVLNVSYKPQ 414
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
KISPK +VR LLH+KIRD+YTHPQFV+DVMKPL IE ++DQEV LSGGELQRVAL L
Sbjct: 415 KISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALAL 474
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
CLGKPAD+YL+ +PSAYLDSEQR++AA+V+KRFILHAKKTAFVVEHDFIMATYLADRVIV
Sbjct: 475 CLGKPADVYLMMKPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIV 534
Query: 541 YEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSY 600
++G PS + VAN+PQ+LL GMN FLS L+ITFRRDP N+RPRINKL+S KD +QK +G+Y
Sbjct: 535 FDGIPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNY 594
Query: 601 YYLDD 605
++LDD
Sbjct: 595 FFLDD 599
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q03195 | RLI1_YEAST | No assigned EC number | 0.6841 | 0.9900 | 0.9851 | yes | no |
| Q58129 | Y719_METJA | No assigned EC number | 0.4827 | 0.9636 | 0.9716 | yes | no |
| O60102 | RLI1_SCHPO | No assigned EC number | 0.6562 | 0.9752 | 0.9949 | yes | no |
| Q8LPJ4 | AB2E_ARATH | No assigned EC number | 0.9190 | 1.0 | 1.0 | yes | no |
| Q9LID6 | AB1E_ARATH | No assigned EC number | 0.7933 | 0.9966 | 1.0 | no | no |
| P61222 | ABCE1_MOUSE | No assigned EC number | 0.7520 | 0.9900 | 1.0 | yes | no |
| P61221 | ABCE1_HUMAN | No assigned EC number | 0.7520 | 0.9900 | 1.0 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 605 | |||
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.0 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.0 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-163 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-149 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-74 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 7e-45 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-43 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 9e-37 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-27 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-25 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-23 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-23 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-23 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-23 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-23 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 9e-23 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-22 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-22 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-21 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-21 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-21 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-21 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-21 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-20 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-20 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-19 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-19 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-19 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-19 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-19 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-18 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 7e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 7e-18 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-17 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-17 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 8e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 8e-17 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-16 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-16 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 9e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 9e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-15 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-15 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-15 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-15 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-15 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-15 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 7e-15 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-15 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 8e-15 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-14 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-14 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-14 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-14 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-14 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-14 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-14 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-14 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 5e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-13 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-13 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-13 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-13 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-13 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-13 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-13 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-13 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-13 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 6e-13 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-13 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-13 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-12 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-12 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-12 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-12 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-12 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-12 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-12 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-12 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-12 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 6e-12 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-12 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 8e-12 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 8e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 9e-12 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 9e-12 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-11 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-11 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-11 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-11 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-11 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-11 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-11 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-11 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 8e-11 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 8e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-11 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 9e-11 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 9e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-10 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-10 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-10 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-10 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-10 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-10 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-10 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-10 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-10 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-10 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-10 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-10 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-10 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-10 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-10 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 7e-10 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-10 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 8e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-09 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-09 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-09 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-09 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-09 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-09 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-09 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-09 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-09 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-09 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-09 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-09 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-09 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-09 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-09 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-09 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-09 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 8e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 9e-09 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 9e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 9e-09 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-08 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-08 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-08 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-08 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-08 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-08 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-08 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-08 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 1e-08 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-08 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-08 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-08 | |
| TIGR04105 | 462 | TIGR04105, FeFe_hydrog_B1, [FeFe] hydrogenase, gro | 2e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-08 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-08 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-08 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-08 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-08 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-08 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-08 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-08 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-08 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-08 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| pfam04068 | 35 | pfam04068, RLI, Possible Fer4-like domain in RNase | 5e-08 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 8e-08 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 9e-08 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 9e-08 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-07 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-07 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-07 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-07 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-07 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-07 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-07 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-07 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-07 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-07 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-07 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-07 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-07 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-07 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-07 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-07 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-07 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-07 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-07 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 5e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-07 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-07 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 6e-07 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-07 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-07 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 7e-07 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-07 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 7e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-07 | |
| PRK07118 | 280 | PRK07118, PRK07118, ferredoxin; Validated | 7e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-07 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 8e-07 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 8e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 8e-07 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-07 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 8e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 9e-07 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 9e-07 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 9e-07 | |
| pfam00037 | 24 | pfam00037, Fer4, 4Fe-4S binding domain | 9e-07 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 9e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-06 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-06 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-06 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-06 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-06 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-06 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-06 | |
| COG1144 | 91 | COG1144, COG1144, Pyruvate:ferredoxin oxidoreducta | 1e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-06 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-06 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-06 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-06 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-06 | |
| PRK07118 | 280 | PRK07118, PRK07118, ferredoxin; Validated | 3e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-06 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 3e-06 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-06 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-06 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-06 | |
| COG1145 | 99 | COG1145, NapF, Ferredoxin [Energy production and c | 3e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-06 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-06 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-06 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-06 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 5e-06 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-06 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 5e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-06 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-06 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 7e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 7e-06 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 7e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 7e-06 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-06 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 9e-06 | |
| COG4231 | 640 | COG4231, COG4231, Indolepyruvate ferredoxin oxidor | 9e-06 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 9e-06 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-05 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-05 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 1e-05 | |
| COG0348 | 386 | COG0348, NapH, Polyferredoxin [Energy production a | 1e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-05 | |
| COG1142 | 165 | COG1142, HycB, Fe-S-cluster-containing hydrogenase | 1e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-05 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-05 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-05 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-05 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-05 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-05 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-05 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-05 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-05 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 3e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-05 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-05 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-05 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-05 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 4e-05 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-05 | |
| TIGR02179 | 78 | TIGR02179, PorD_KorD, 2-oxoacid:acceptor oxidoredu | 5e-05 | |
| PRK05113 | 191 | PRK05113, PRK05113, electron transport complex pro | 5e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-05 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-05 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 6e-05 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 6e-05 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 6e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 6e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 6e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-05 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 8e-05 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 8e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-05 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 9e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 9e-05 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 9e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 9e-05 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 9e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-04 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK07118 | 280 | PRK07118, PRK07118, ferredoxin; Validated | 1e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-04 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-04 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-04 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-04 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-04 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-04 | |
| PRK06991 | 270 | PRK06991, PRK06991, ferredoxin; Provisional | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-04 | |
| TIGR01944 | 165 | TIGR01944, rnfB, electron transport complex, RnfAB | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-04 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 3e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-04 | |
| COG0437 | 203 | COG0437, HybA, Fe-S-cluster-containing hydrogenase | 3e-04 | |
| pfam12837 | 24 | pfam12837, Fer4_6, 4Fe-4S binding domain | 3e-04 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-04 | |
| COG1146 | 68 | COG1146, COG1146, Ferredoxin [Energy production an | 3e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-04 | |
| COG2878 | 198 | COG2878, COG2878, Predicted NADH:ubiquinone oxidor | 3e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-04 | |
| COG1145 | 99 | COG1145, NapF, Ferredoxin [Energy production and c | 4e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-04 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-04 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-04 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-04 | |
| TIGR03336 | 595 | TIGR03336, IOR_alpha, indolepyruvate ferredoxin ox | 4e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-04 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 5e-04 | |
| pfam13187 | 44 | pfam13187, Fer4_9, 4Fe-4S dicluster domain | 5e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-04 | |
| cd03272 | 243 | cd03272, ABC_SMC3_euk, ATP-binding cassette domain | 5e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-04 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 6e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 6e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 6e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 6e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 6e-04 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 6e-04 | |
| cd03239 | 178 | cd03239, ABC_SMC_head, The SMC head domain belongs | 6e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-04 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 7e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 7e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 7e-04 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 8e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 8e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 8e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 9e-04 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 9e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 9e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 9e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.001 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 0.001 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.001 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.001 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.001 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 0.001 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.001 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.001 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.001 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.001 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 0.001 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 0.001 | |
| pfam13187 | 44 | pfam13187, Fer4_9, 4Fe-4S dicluster domain | 0.001 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.001 | |
| PRK12769 | 654 | PRK12769, PRK12769, putative oxidoreductase Fe-S b | 0.001 | |
| pfam13237 | 51 | pfam13237, Fer4_10, 4Fe-4S dicluster domain | 0.001 | |
| pfam13183 | 54 | pfam13183, Fer4_8, 4Fe-4S dicluster domain | 0.001 | |
| pfam12797 | 22 | pfam12797, Fer4_2, 4Fe-4S binding domain | 0.001 | |
| pfam12838 | 48 | pfam12838, Fer4_7, 4Fe-4S dicluster domain | 0.001 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.002 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 0.002 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 0.002 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 0.002 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 0.002 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.002 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 0.002 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.002 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.002 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.002 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.002 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 0.002 | |
| TIGR02512 | 374 | TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, grou | 0.002 | |
| PRK13795 | 636 | PRK13795, PRK13795, hypothetical protein; Provisio | 0.002 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.002 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.002 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.002 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.003 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 0.003 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.003 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.003 | |
| COG1149 | 284 | COG1149, COG1149, MinD superfamily P-loop ATPase c | 0.003 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 0.003 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 0.004 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.004 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.004 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 0.004 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.004 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.004 | |
| pfam12838 | 48 | pfam12838, Fer4_7, 4Fe-4S dicluster domain | 0.004 | |
| PRK12809 | 639 | PRK12809, PRK12809, putative oxidoreductase Fe-S b | 0.004 | |
| cd03110 | 179 | cd03110, Fer4_NifH_child, This protein family's fu | 0.004 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 962 bits (2490), Expect = 0.0
Identities = 332/600 (55%), Positives = 433/600 (72%), Gaps = 9/600 (1%)
Query: 4 RLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVK 63
+L RIA+V DRC+PKKC EC K CPVV+TGK IE+ ISEELCIGCGICVK
Sbjct: 1 KLMRIAVVDYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDTGKPVISEELCIGCGICVK 60
Query: 64 KCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKIL 123
KCPF+AI I+NLP++L+++ HRYG N FKL+RLP PRPG+V+G++G NGIGKSTALKIL
Sbjct: 61 KCPFDAISIVNLPEELEEEVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKIL 120
Query: 124 AGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGN 183
AG+LKPNLGR+ +PP W E++ FRG+ELQNYF ++ E L+A+ KPQYVD IPK V+G
Sbjct: 121 AGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGK 180
Query: 184 VGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEP 243
VG++L + DER ++ L L V+DR+V +LSGGELQR AIA +++A++Y FDEP
Sbjct: 181 VGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEP 240
Query: 244 SSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPF 303
SSYLD++QRL AA+V+R L YVIVVEHDL+VLDYLSDF+ LYG+PG YGVV+ P
Sbjct: 241 SSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGEPGVYGVVSKPK 300
Query: 304 SVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFK 363
SVR GIN +L G++P EN+RFR E + F + A + +YP + KT G+FK
Sbjct: 301 SVRVGINEYLKGYLPEENVRFRPEEIEFEEKPPRDDKARDTL----VEYPDLKKTYGDFK 356
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS 423
L+V EGE D ++I +LG NG GKTTF+++LAG++KPD + D+ VSYKPQ IS
Sbjct: 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDL-----KVSYKPQYIS 411
Query: 424 PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG 483
P + TV LL IR ++ F ++++KPL +E L+++ V LSGGELQRVA+ L
Sbjct: 412 PDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALS 471
Query: 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543
+ AD+YL+DEPSAYLD EQRI+ AKVI+RFI + +KTA VV+HD M Y++DR+IV+EG
Sbjct: 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531
Query: 544 QPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYL 603
+P A+ P S+ GMN FL +L +TFRRDP RPR+NK S DR+QK G YYY
Sbjct: 532 EPGKHGHASPPMSMREGMNRFLKNLGVTFRRDPETGRPRVNKPGSQLDREQKERGEYYYA 591
|
Length = 591 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 863 bits (2232), Expect = 0.0
Identities = 303/600 (50%), Positives = 409/600 (68%), Gaps = 12/600 (2%)
Query: 6 TRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKC 65
RIA+V DRC+PKKC EC K CPVV+TG+ IE+ ISEELCIGCGICVKKC
Sbjct: 2 MRIAVVDYDRCQPKKCNYECIKYCPVVRTGEETIEIDEDDGKPVISEELCIGCGICVKKC 61
Query: 66 PFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAG 125
PF+AI I+NLP++L+++ HRYG N FKL+ LP+P+ G+V G++G NGIGK+TA+KIL+G
Sbjct: 62 PFDAISIVNLPEELEEEPVHRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSG 121
Query: 126 KLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVG 185
+L PNLG + P W E+L FRG+ELQNYF ++ +K + KPQYVD IPK +G V
Sbjct: 122 ELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVR 181
Query: 186 QVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSS 245
++L + DER ++ L L ++DR++ +LSGGELQR AIA +++A+ Y FDEP+S
Sbjct: 182 ELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTS 241
Query: 246 YLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSV 305
YLD++QRL A+++R L YV+VVEHDL+VLDYL+D + YG+PGAYGVV+ P V
Sbjct: 242 YLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGEPGAYGVVSKPKGV 300
Query: 306 REGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLK 365
R GIN +L G++P EN+R R E + F E P E ET +YP + K G+F L+
Sbjct: 301 RVGINEYLKGYLPEENMRIRPEPIEFE--ERPPRDESERETLV--EYPDLTKKLGDFSLE 356
Query: 366 VVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE-DSDVEIPEFNVSYKPQKISP 424
V GE + ++I ++G NG GKTTF ++LAG+LKPD E D +++I SYKPQ I P
Sbjct: 357 VEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKI-----SYKPQYIKP 411
Query: 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484
+ TV LL + I D + S+++KPL +E+L+D+ V +LSGGELQRVA+ CL +
Sbjct: 412 DYDGTVEDLL-RSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR 470
Query: 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544
AD+YL+DEPSA+LD EQR+ AK I+R + TA VV+HD M Y++DR++V+EG+
Sbjct: 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGE 530
Query: 545 PSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYLD 604
P A+ P + GMN FL L ITFRRD RPR+NK S DR+QK G YYY D
Sbjct: 531 PGKHGHASGPMDMREGMNRFLKELGITFRRDEETGRPRVNKPGSYLDREQKERGEYYYAD 590
|
Length = 590 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 465 bits (1199), Expect = e-163
Identities = 175/255 (68%), Positives = 213/255 (83%)
Query: 78 DLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP 137
+L+ + HRYGPN+FKLHRLPVPR GQVLGLVG NGIGKSTALKILAGKLKPNLG+F++P
Sbjct: 1 ELEDEPVHRYGPNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDP 60
Query: 138 PDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMK 197
PDW EIL FRGSELQNYFT++LE ++K I+KPQYVD IPKAV+G VG++L +KDER
Sbjct: 61 PDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKL 120
Query: 198 ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQ 257
+L L+L V+DRN+ LSGGELQR AIA ++A+ Y FDEPSSYLD+KQRL AA+
Sbjct: 121 DELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR 180
Query: 258 VVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFV 317
++R L ++YV+VVEHDL+VLDYLSD+I CLYG+PGAYGVVTLP SVREGIN FL G++
Sbjct: 181 LIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGEPGAYGVVTLPKSVREGINEFLDGYL 240
Query: 318 PTENLRFRDESLTFR 332
PTEN+RFR+ES+ F
Sbjct: 241 PTENMRFREESIEFE 255
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 429 bits (1105), Expect = e-149
Identities = 155/249 (62%), Positives = 190/249 (76%), Gaps = 3/249 (1%)
Query: 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVE 409
Y YPTM KT G F L+V G ++S++I +LG NG GKTTFI+MLAG+LKPD + D+E
Sbjct: 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIE 57
Query: 410 IPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLS 469
I VSYKPQ I ++ TVR LL +D YTHP F +++ KPL IEQ++D+EV LS
Sbjct: 58 IELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELS 117
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFI 529
GGELQRVA+ CL K ADIYL+DEPSAYLD EQR++A+KVI+RF + +KTAFVVEHD I
Sbjct: 118 GGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII 177
Query: 530 MATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDST 589
M YLADR+IV+EG+PSV+ VAN PQSL +GMN FL +LDITFRRDP RPRINKL S
Sbjct: 178 MIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDITFRRDPETGRPRINKLGSV 237
Query: 590 KDRDQKAAG 598
KDR+QK +G
Sbjct: 238 KDREQKESG 246
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 1e-74
Identities = 86/223 (38%), Positives = 109/223 (48%), Gaps = 47/223 (21%)
Query: 351 KYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI 410
YP VK G F L V G + ++I ++G NGTGKTT +++LAG L P + E
Sbjct: 2 LYPDCVKRYGVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP---NGDNDEW 58
Query: 411 PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSG 470
YKPQ I LSG
Sbjct: 59 DGITPVYKPQYID--------------------------------------------LSG 74
Query: 471 GELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIM 530
GELQRVA+ L + A YL DEPSAYLD EQR+ AA+ I+R KKTA VVEHD +
Sbjct: 75 GELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134
Query: 531 ATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFR 573
YL+DR+ V+EG+P V +A+ P+ G+N FL ITFR
Sbjct: 135 LDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRGYLITFR 177
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 7e-45
Identities = 93/244 (38%), Positives = 119/244 (48%), Gaps = 69/244 (28%)
Query: 79 LDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP 138
L D RYG F L L V + G+V+G+VG NG GK+TA+KILAG+L PN
Sbjct: 2 LYPDCVKRYG-VFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND---- 56
Query: 139 DWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA 198
+W D + + KPQY+D
Sbjct: 57 EW---------------------DGITPVYKPQYID------------------------ 71
Query: 199 DLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV 258
LSGGELQR AIA ++NA Y+FDEPS+YLD++QRL AA+
Sbjct: 72 ------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARA 113
Query: 259 VRSLLRPNS-YVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFV 317
+R L +VVEHDL+VLDYLSD I G+PG YG+ + P REGIN FL G++
Sbjct: 114 IRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRGYL 173
Query: 318 PTEN 321
T
Sbjct: 174 ITFR 177
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 2e-43
Identities = 84/238 (35%), Positives = 121/238 (50%), Gaps = 38/238 (15%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
+V+G++G NGIGK+T +K+LAG LKP+ G I
Sbjct: 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEGD-------------------------IE 57
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDER-----DMKADLCTDLDLNQVIDRNVG 215
+ KPQY+ +G V +L + K ++ L + Q++DR V
Sbjct: 58 IELDTVSYKPQYI--KADY-EGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVP 114
Query: 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL-LRPNSYVIVVEH 274
+LSGGELQR AIA ++A+IY+ DEPS+YLDV+QRL A++V+R VVEH
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
Query: 275 DLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFR 332
D+ ++DYL+D + G+P GV P S+R G+N FL T FR + T R
Sbjct: 175 DIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDIT----FRRDPETGR 228
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 9e-37
Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 35/237 (14%)
Query: 373 DSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDSDVEIPEF-------------- 413
+ Q++ ++G NG GK+T +++LAG LKP D D D + EF
Sbjct: 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLE 84
Query: 414 ---NVSYKPQKIS--PK-FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVN 467
V KPQ + PK + V LL +K + +++ L + ++D+ +
Sbjct: 85 GDVKVIVKPQYVDLIPKAVKGKVGELLKKK-----DERGKLDELVDQLELRHVLDRNIDQ 139
Query: 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527
LSGGELQRVA+ L + AD Y DEPS+YLD +QR+ AA++I+ VVEHD
Sbjct: 140 LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHD 198
Query: 528 FIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLSHL----DITFRRDPTNFR 580
+ YL+D + G+P V P+S+ G+N FL ++ FR + F
Sbjct: 199 LAVLDYLSDYIHCLYGEPGAYGVVTLPKSVREGINEFLDGYLPTENMRFREESIEFE 255
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 3e-27
Identities = 121/532 (22%), Positives = 209/532 (39%), Gaps = 97/532 (18%)
Query: 77 KDLDKDTTHRYGPNT------FKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPN 130
++L + G F++ PG++LG+VG +G GKST L G L
Sbjct: 9 ENLTVEFATDGGRVPAVRDVSFEVE------PGEILGIVGESGSGKSTLALALMGLLPEG 62
Query: 131 LGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAII-----------KPQYV--DHIP 177
+ E++ G +L R + I P D I
Sbjct: 63 GRITSG-----EVI--LDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR 115
Query: 178 KAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV--GDLSGGELQRFAIAVVAVQNA 235
+A++ + + + R +L + L R+ LSGG QR IA+
Sbjct: 116 EALR--LHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKP 173
Query: 236 EIYMFDEPSSYLDV---KQRLKAAQVVRSLLRPNSY-VIVVEHDLSVLDYLSDFICCLYG 291
++ + DEP++ LDV Q L ++ L R V+ + HDL V+ L+D + +Y
Sbjct: 174 KLLIADEPTTALDVTTQAQILDL---LKDLQRELGMAVLFITHDLGVVAELADRVVVMYK 230
Query: 292 KPGAYGVVTLPFSVREGINIF-------LAGFVPTENLRFR-DESLTFRVAETPQESAEE 343
G + E ++ L VP + P S
Sbjct: 231 -----GEIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRN 285
Query: 344 IETYARYKYPTMVKTQGNFKLKVVEG---EFTDSQIIVMLGENGTGKTTFIRMLAGLLKP 400
+ RY + + ++K V+ + + + + ++GE+G+GK+T R+LAGLL P
Sbjct: 286 LS--KRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP 343
Query: 401 DS----VEDSDVEIPEFNVSYKPQKISPKFQ---------STVRHLLHQKIRDSYTHPQF 447
S + D+++ + ++I FQ TV +L + +R H
Sbjct: 344 SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRI---HGGG 400
Query: 448 VSDVMKPLLIEQL----MDQEVVN-----LSGGELQRVALCLCLGKPADIYLIDEPSAYL 498
+ + E L + E ++ LSGG+ QRVA+ L + ++DEP + L
Sbjct: 401 SGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSAL 460
Query: 499 DSEQRIVAAKVIKRF--ILHAKKTAFV-VEHDFIMAT--YLADRVIV-YEGQ 544
D V A+V+ + ++ + HD +A Y+ADRV V Y+G+
Sbjct: 461 DV---SVQAQVLNLLKDLQEELGLTYLFISHD--LAVVRYIADRVAVMYDGR 507
|
Length = 539 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-25
Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 39/187 (20%)
Query: 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNV 415
+ G L V +I+ ++G NG+GK+T +R +AGLLKP S E + I ++
Sbjct: 7 FRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE---ILIDGKDI 63
Query: 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQR 475
+ P L ++I Y PQ LSGG+ QR
Sbjct: 64 AKLP-----------LEELRRRI--GYV-PQ---------------------LSGGQRQR 88
Query: 476 VALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLA 535
VAL L D+ L+DEP++ LD R ++++ +T +V HD +A A
Sbjct: 89 VALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAA 147
Query: 536 DRVIVYE 542
DRVIV +
Sbjct: 148 DRVIVLK 154
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 97.5 bits (244), Expect = 2e-23
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 44/198 (22%)
Query: 81 KDTTHRYGPNTFKLHRLPV-PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPD 139
++ + YG L L + G+++G++G NG GKST LK LAG LKP+ G
Sbjct: 3 ENLSVGYG-GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSG------- 54
Query: 140 WQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKAD 199
EI G +L + + L + A V Q L+
Sbjct: 55 --EI--LLDGKDLASLSPKELARKI--------------AY---VPQALEL--------- 84
Query: 200 LCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259
L L + DR +LSGGE QR +A Q I + DEP+S+LD+ +++ +++
Sbjct: 85 ----LGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL 140
Query: 260 RSLLR-PNSYVIVVEHDL 276
R L R V++V HDL
Sbjct: 141 RRLARERGKTVVMVLHDL 158
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 2e-23
Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 27/209 (12%)
Query: 347 YARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS---- 402
R+ T + + L + +GEF +V+LG +G GKTT +RM+AGL +P S
Sbjct: 7 TKRFGNVTALD---DLNLDIADGEF-----VVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 403 VEDSDVEIPEFNVSYKPQKISPKFQS-------TVR----HLLHQKIRDSYTHPQFVSDV 451
+ DV ++ K + I+ FQ+ TV L + + V +V
Sbjct: 59 IGGRDVT----DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREV 114
Query: 452 MKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK 511
+ L IE L+D++ LSGG+ QRVAL + + ++L+DEP + LD++ R+ +K
Sbjct: 115 AELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELK 174
Query: 512 RFILHAKKTAFVVEHDFIMATYLADRVIV 540
R T V HD + A +ADR+ V
Sbjct: 175 RLQQRLGTTTIYVTHDQVEAMTMADRIAV 203
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 97.9 bits (245), Expect = 2e-23
Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDV 408
+ YP L + + ++++G NG+GK+T +R+L GLL P S +V
Sbjct: 6 SFSYPD----GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS---GEV 58
Query: 409 EIPEFNVSYKPQK-ISPK----FQ--------STVR-----HLLHQKIRDSYTHPQFVSD 450
+ +++ K + K FQ TV L + + + V +
Sbjct: 59 LVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-PEEEIEERVEE 117
Query: 451 VMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVI 510
++ + +E L D+ LSGG+ QRVA+ L DI L+DEP+A LD R +++
Sbjct: 118 ALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELL 177
Query: 511 KRFILHAK-KTAFVVEHDFIMATYLADRVIV 540
K+ L A+ KT +V HD + LADRVIV
Sbjct: 178 KK--LKAEGKTIIIVTHDLDLLLELADRVIV 206
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 4e-23
Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 22/192 (11%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFN----VSY 417
L V +GE T ++ G NG GK+T ++ + GLLKP S ++ + + + Y
Sbjct: 25 LSVEKGEIT---ALI--GPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79
Query: 418 KPQKIS--PKFQSTVRHLL------HQKIRDSYT--HPQFVSDVMKPLLIEQLMDQEVVN 467
PQK S F TV+ ++ + + V + ++ + +E L D+++
Sbjct: 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGE 139
Query: 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527
LSGG+ QRV L L + D+ L+DEP +D + ++K + KT +V HD
Sbjct: 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE-LRQEGKTVLMVTHD 198
Query: 528 FIMATYLADRVI 539
+ DRVI
Sbjct: 199 LGLVMAYFDRVI 210
|
Length = 254 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 6e-23
Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 26/209 (12%)
Query: 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VED 405
++YP + L++ +GE ++++G NG+GK+T +++L GLLKP S V+
Sbjct: 11 FRYPGRKAALKDVSLEIEKGER-----VLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDG 65
Query: 406 SDVEIPEFNVSYKPQKISPKFQ--------STVRH-----LLHQKIRDSYTHPQFVSDVM 452
D E ++ QK+ FQ TV L + + + V++ +
Sbjct: 66 LDTS-SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEI-EERVAEAL 123
Query: 453 KPLLIEQLMDQEVVNLSGGELQRVAL-CLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK 511
+ + +E+L+D+ NLSGG+ QRVA+ + P +I L+DEP+A LD + R +++K
Sbjct: 124 ELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGP-EILLLDEPTAGLDPKGRRELLELLK 182
Query: 512 RFILHAKKTAFVVEHDFIMATYLADRVIV 540
+ KT +V HD + ADRV+V
Sbjct: 183 KLKEEGGKTIIIVTHDLELVLEYADRVVV 211
|
Length = 235 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 9e-23
Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 36/201 (17%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYK 418
+ L + +GEF +V+LG +G GK+T +RM+AGL +P S + ++ +
Sbjct: 21 DVNLDIEDGEF-----VVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP---- 71
Query: 419 PQK--ISPKFQS-------TV----------RHLLHQKIRDSYTHPQFVSDVMKPLLIEQ 459
P+K I+ FQ+ TV R + +I V +V K L +E
Sbjct: 72 PEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR------VKEVAKLLGLEH 125
Query: 460 LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK 519
L++++ + LSGG+ QRVAL L + ++L+DEP + LD++ R++ IK+
Sbjct: 126 LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGT 185
Query: 520 TAFVVEHDFIMATYLADRVIV 540
T V HD + A LADR++V
Sbjct: 186 TTIYVTHDQVEAMTLADRIVV 206
|
Length = 338 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 5e-22
Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 21/215 (9%)
Query: 81 KDTTHRYGPNTFKLH--RLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR---FN 135
++ + RY L L + G+ + L+G NG GKST LK+L G LKP G
Sbjct: 7 ENLSFRYPGRKAALKDVSLEIE-KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDG 65
Query: 136 NPPDWQEILTYFRGSE---LQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKD 192
++ L R QN ++ + V + N+G ++ +
Sbjct: 66 LDTSSEKSLLELRQKVGLVFQNPDDQLFGPTV-----EDEVAFGLE----NLGLPREEIE 116
Query: 193 ERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252
ER A+ + L +++DR +LSGG+ QR AIA V EI + DEP++ LD K R
Sbjct: 117 ERV--AEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGR 174
Query: 253 LKAAQVVRSL-LRPNSYVIVVEHDLSVLDYLSDFI 286
+ ++++ L +I+V HDL ++ +D +
Sbjct: 175 RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRV 209
|
Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 7e-22
Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 60/210 (28%)
Query: 81 KDTTHRYGPNTFKLHRLPV-PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPD 139
++ + RYG T L + + + G+++ LVG NG GKST L+ +AG LKP G
Sbjct: 3 ENLSFRYGGRTA-LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI----- 56
Query: 140 WQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKAD 199
G ++ L + + Q
Sbjct: 57 ------LIDGKDIAKLPLEELRRRI---------------------GYVPQ--------- 80
Query: 200 LCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259
LSGG+ QR A+A + N ++ + DEP+S LD R + +++
Sbjct: 81 -----------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL 123
Query: 260 RSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289
R L VI+V HD + + +D + L
Sbjct: 124 RELAEEGRTVIIVTHDPELAELAADRVIVL 153
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 1e-21
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 11/192 (5%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV-EIP--E 412
FKLK V E V+LG G+GK+ + +AG +KPDS + D+ +P +
Sbjct: 11 KEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK 70
Query: 413 FNVSYKPQKIS--PKF--QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNL 468
++SY PQ + P + + L ++ D + V ++ + L I+ L++++ L
Sbjct: 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETL 130
Query: 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528
SGGE QRVA+ L I L+DEP + LD + + +K+ T V HDF
Sbjct: 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190
Query: 529 IMATYLADRVIV 540
A LAD+V +
Sbjct: 191 EEAWALADKVAI 202
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 91.7 bits (229), Expect = 2e-21
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 29/189 (15%)
Query: 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIP 411
V G L + +I+ +LG NG GK+T ++ LAGLLKP S ++ D+
Sbjct: 7 VGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA-- 64
Query: 412 EFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGG 471
S P++++ R + +V ++ L + L D+ LSGG
Sbjct: 65 ----SLSPKELA-------RKIA------------YVPQALELLGLAHLADRPFNELSGG 101
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA 531
E QRV L L + I L+DEP+++LD +I ++++R KT +V HD +A
Sbjct: 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161
Query: 532 TYLADRVIV 540
ADRVI+
Sbjct: 162 ARYADRVIL 170
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 92.9 bits (232), Expect = 2e-21
Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 38/205 (18%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR---FNNPPDWQEILTYFR--GSELQN- 154
+ G+ + +VG NG GKST L++L G L P G + R G QN
Sbjct: 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNP 84
Query: 155 ----YFTRILED------NLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL 204
+ + E+ NL L +++ + + +
Sbjct: 85 DDQFFGPTVEEEVAFGLENLG----------------------LPEEEIEERVEEALELV 122
Query: 205 DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
L + DR+ LSGG+ QR AIA V + +I + DEP++ LD R + ++++ L
Sbjct: 123 GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA 182
Query: 265 PNSYVIVVEHDLSVLDYLSDFICCL 289
+I+V HDL +L L+D + L
Sbjct: 183 EGKTIIIVTHDLDLLLELADRVIVL 207
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 2e-21
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 34/191 (17%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
G++ G++G NG GKST LK LAG LKP G G ++ + + L
Sbjct: 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV-----------LLDGKDIASLSPKEL- 74
Query: 162 DNLKAIIKPQYVDHIPKAVQG---------------NVGQVLDQKDERDMKADLCTDLDL 206
K + YV P A G + ++DE ++ L L L
Sbjct: 75 --AKKLA---YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEAL-ELLGL 128
Query: 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL-LRP 265
+ DR V +LSGGE QR IA Q I + DEP+S+LD+ +++ +++R L
Sbjct: 129 EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK 188
Query: 266 NSYVIVVEHDL 276
V++V HDL
Sbjct: 189 GLTVVMVLHDL 199
|
Length = 258 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 4e-21
Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 40/188 (21%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
+ L + GE +LG +G+GK+T +R +AGL +PDS ++ D+ E +
Sbjct: 18 DVSLNIEAGEIV-----ALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELP 72
Query: 417 YKPQKISPKFQSTVRHLL--HQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQ 474
++I FQ L H + ++ LSGG+ Q
Sbjct: 73 PLRRRIGMVFQ---DFALFPHLTVLENIALG----------------------LSGGQQQ 107
Query: 475 RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK--KTAFVVEHDFIMAT 532
RVAL L D+ L+DEP++ LD R ++K L A+ T +V HD A
Sbjct: 108 RVALARALAMDPDVLLLDEPTSALDPITRREVRALLKS--LQAQLGITVVLVTHDLDEAA 165
Query: 533 YLADRVIV 540
LADRV+V
Sbjct: 166 RLADRVVV 173
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 6e-21
Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 26/213 (12%)
Query: 81 KDTTHRYGPNTFKLHRLPVP-RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNP 137
++ + Y T L L + G+++ L G NG GK+T KILAG +K + G N
Sbjct: 3 ENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK 62
Query: 138 PDWQEILTYFRGSELQNYFTRILEDNLKAI-IKPQYVDHI--PKAVQGNVGQVLDQKDER 194
P ++ K+I Q VD+ +V+ + L + D
Sbjct: 63 P-------------------IKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAG 103
Query: 195 DMKA-DLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRL 253
+ +A + DLDL + +R+ LSGG+ QR AIA + ++ +FDEP+S LD K
Sbjct: 104 NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNME 163
Query: 254 KAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFI 286
+ +++R L VIV+ HD L + D +
Sbjct: 164 RVGELIRELAAQGKAVIVITHDYEFLAKVCDRV 196
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 9e-21
Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE------DSDVEIPEF--NV 415
+V GE I +LG NG GKTT +++LAGLLKP S E D E + +
Sbjct: 26 FEVEPGE-----IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80
Query: 416 SYKPQKISPKFQSTVRHLL--HQKIR--DSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGG 471
Y PQ+ S + TVR L ++ + + ++++ +E +++V LSGG
Sbjct: 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGG 140
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA 531
QR+++ L L ++ ++DEP++ LD E R ++++ T + H I+
Sbjct: 141 MKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH--ILE 198
Query: 532 T--YLADRVIV-YEGQ 544
L DRVI+ +G+
Sbjct: 199 EAEELCDRVIILNDGK 214
|
Length = 293 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 1e-20
Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 52/239 (21%)
Query: 68 EAIQIINLPKDLDKDTTHRYGPN-------TFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
E I++ NL T +YG + +F++ PG++ GL+G NG GK+T L
Sbjct: 3 EVIEVRNL--------TKKYGGDKTALDGVSFEV------EPGEIFGLLGPNGAGKTTLL 48
Query: 121 KILAGKLKPNLG--RFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK 178
KILAG LKP G +E R RI + PQ P+
Sbjct: 49 KILAGLLKPTSGEILVLGYDVVKEPAKVRR---------RI------GYV-PQEPSLYPE 92
Query: 179 AVQGNVGQVLD--------QKDERDMKAD-LCTDLDLNQVIDRNVGDLSGGELQRFAIAV 229
V + L+ K+E + + + L L ++ V LSGG QR +IA+
Sbjct: 93 L---TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIAL 149
Query: 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFIC 287
+ + E+ + DEP+S LD + R + +++R L + +++ H L + L D +
Sbjct: 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI 208
|
Length = 293 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 5e-20
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 36/180 (20%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS 423
L V +GE I +LG NG GKTT I+++ GLLKPDS E +++ ++ +P+++
Sbjct: 21 LTVEKGE-----IYGLLGPNGAGKTTLIKIILGLLKPDSGE---IKVLGKDIKKEPEEVK 72
Query: 424 PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG 483
+ Y P+ +P L E L +E + LSGG QR+AL L
Sbjct: 73 RRI--------------GYL-PE------EPSLYENLTVRENLKLSGGMKQRLALAQALL 111
Query: 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK---KTAFVVEHDFIMATYLADRVIV 540
++ ++DEP++ LD + + + K KT + H A L DRV +
Sbjct: 112 HDPELLILDEPTSGLD----PESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAI 167
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 9e-20
Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 26/196 (13%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
+ +V GEF I+ G NG GK+T ++ + GLLKP S V +E +
Sbjct: 17 DVSFEVKPGEFL--AIV---GPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIG 71
Query: 417 YKPQK--ISPKFQSTVRHLL------HQKIRDSYTHPQF--VSDVMKPLLIEQLMDQEVV 466
Y PQ+ I F +VR ++ H+ + + V + ++ + + +L D+++
Sbjct: 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG 131
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAK-KTAFV 523
LSGG+ QRV L L + D+ L+DEP A +D +++ I +++ L + T V
Sbjct: 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE--LLRE--LRREGMTILV 187
Query: 524 VEHDFIMATYLADRVI 539
V HD + DRV+
Sbjct: 188 VTHDLGLVLEYFDRVL 203
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 32/211 (15%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
G++ L+G NG GKST LK + G LKP+ G EI + + + RI
Sbjct: 28 EKGEITALIGPNGAGKSTLLKAILGLLKPSSG---------EIKIFGKPVRKRRKRLRI- 77
Query: 161 EDNLKAIIKPQY--VDH-IPKAV----------QGNVGQVLDQKDERDMKADLCTDLDLN 207
+ PQ VD P V + + L++KD+ + L + +
Sbjct: 78 -----GYV-PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEAL-ERVGME 130
Query: 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS 267
+ DR +G+LSGG+ QR +A QN ++ + DEP + +DV + + +++ L +
Sbjct: 131 DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190
Query: 268 YVIVVEHDLS-VLDYLSDFICCLYGKPGAYG 297
V++V HDL V+ Y D + CL A G
Sbjct: 191 TVLMVTHDLGLVMAY-FDRVICLNRHLIASG 220
|
Length = 254 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 1e-19
Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 33/247 (13%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV-EIP--EF--N 414
+ +GE T +LG NG+GK+T ++ LAGLLKP S ++ D+ + E
Sbjct: 23 FSIPKGEIT-----GILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKK 77
Query: 415 VSYKPQKISPKFQSTVRHLL------HQKIRDSYT--HPQFVSDVMKPLLIEQLMDQEVV 466
++Y PQ S F TV L+ H + + + V + ++ L +E L D+ V
Sbjct: 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD 137
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526
LSGGE QRV + L + I L+DEP+++LD +I ++++ T +V H
Sbjct: 138 ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLH 197
Query: 527 DFIMATYLADRVIV-YEGQPSVDCVANA-PQSLLTGMNL---FLSHLDITFRRDPTNFRP 581
D +A AD +I+ +G+ VA P+ +LT NL + +D DP + +P
Sbjct: 198 DLNLAARYADHLILLKDGK----IVAQGTPEEVLTEENLREVY--GVDADVIEDPDSGKP 251
Query: 582 RINKLDS 588
+ L S
Sbjct: 252 VVIPLGS 258
|
Length = 258 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-19
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 32/199 (16%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP 419
G L + + +II + G+NG GKTT ++LAGL+K S +
Sbjct: 12 GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGS----------ILLNG 61
Query: 420 QKISPK-----------------FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD 462
+ I K F +VR L +++ + V+K L + L +
Sbjct: 62 KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE 121
Query: 463 QEVVNLSGGELQRVALC--LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKT 520
+ ++LSGG+ QR+A+ L GK D+ + DEP++ LD + ++I+ + K
Sbjct: 122 RHPLSLSGGQKQRLAIAAALLSGK--DLLIFDEPTSGLDYKNMERVGELIRE-LAAQGKA 178
Query: 521 AFVVEHDFIMATYLADRVI 539
V+ HD+ + DRV+
Sbjct: 179 VIVITHDYEFLAKVCDRVL 197
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 4e-19
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 34/200 (17%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP- 419
+ L V GEF +LG +G GKTT +R++AGL +PDS ++ I +V+ P
Sbjct: 18 DLSLTVEPGEFL-----ALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPP 69
Query: 420 --QKISPKFQS-------TV----------RHLLHQKIRDSYTHPQFVSDVMKPLLIEQL 460
+ I FQ TV R + +IR V ++++ + +E L
Sbjct: 70 ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR------VRELLELVGLEGL 123
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKT 520
+++ LSGG+ QRVAL L + + L+DEP + LD++ R + +K T
Sbjct: 124 LNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGIT 183
Query: 521 AFVVEHDFIMATYLADRVIV 540
V HD A LADR+ V
Sbjct: 184 TIYVTHDQEEALALADRIAV 203
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 84.0 bits (209), Expect = 7e-19
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 38/174 (21%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYKPQKISPKFQSTVRH 432
+ + ++G +G+GK+T +++L L P S + V++ + ++ + I+ Q
Sbjct: 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDP--F 86
Query: 433 LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVN-LSGGELQRVALCLCLGKPADIYLI 491
L IR+ N LSGG+ QR+A+ L + I ++
Sbjct: 87 LFSGTIRE--------------------------NILSGGQRQRIAIARALLRDPPILIL 120
Query: 492 DEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543
DE ++ LD +E I+ A ++ L KT V+ H ADR+IV +
Sbjct: 121 DEATSALDPETEALILEA--LRA--LAKGKTVIVIAHRLSTIR-DADRIIVLDD 169
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 9e-19
Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 35/201 (17%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
PG+ L +VG NG GKST LK + G LKP G F + LE
Sbjct: 24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR-------------------VFGKPLE 64
Query: 162 DNLKAI-IKPQY--VDH-IPKAV----------QGNVGQVLDQKDERDMKADLCTDLDLN 207
K I PQ +D P +V + + L + D+ + L + L+
Sbjct: 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEAL-ERVGLS 123
Query: 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS 267
++ DR +G+LSGG+ QR +A VQ+ ++ + DEP + +D K + +++R L R
Sbjct: 124 ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM 183
Query: 268 YVIVVEHDL-SVLDYLSDFIC 287
++VV HDL VL+Y +
Sbjct: 184 TILVVTHDLGLVLEYFDRVLL 204
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-18
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 29/189 (15%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIPEFNVSYKPQKISPKFQSTVRH 432
Q+ ++G +G GK+T + +L G L P E +++ + + ++IS Q+ +
Sbjct: 348 QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP--Y 405
Query: 433 LLHQKIRDSYT--HPQFVSD---------------VMKPLLIEQLMDQEVVNLSGGELQR 475
L IR++ P SD V KP ++ ++ + LSGG+ QR
Sbjct: 406 LFAGTIRENILLARPD-ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQR 464
Query: 476 VALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK--KTAFVVEHDFIMATY 533
+AL L PA + L+DEP+A+LD+E ++I + + KT V+ H +
Sbjct: 465 LALARALLSPASLLLLDEPTAHLDAE----TEQIILQALQELAKQKTVLVITHR-LEDAA 519
Query: 534 LADRVIVYE 542
ADR++V +
Sbjct: 520 DADRIVVLD 528
|
Length = 559 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 7e-18
Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 33/198 (16%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP---- 419
L + +GEF ++G +G+GK+T + +L GL +P S +V + ++S
Sbjct: 25 LSIEKGEFV-----AIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGTDISKLSEKEL 76
Query: 420 -----QKISPKFQSTVRHLL-HQKIRDSYTHPQFVSDVMKP--------LL----IEQLM 461
+ I FQS +LL ++ P ++ V K LL + +
Sbjct: 77 AAFRRRHIGFVFQSF--NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL 134
Query: 462 DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521
+ LSGG+ QRVA+ L I L DEP+ LDSE ++++ A T
Sbjct: 135 NHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTI 194
Query: 522 FVVEHDFIMATYLADRVI 539
VV HD +A Y ADR+I
Sbjct: 195 VVVTHDPELAEY-ADRII 211
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 7e-18
Identities = 61/210 (29%), Positives = 89/210 (42%), Gaps = 34/210 (16%)
Query: 351 KYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI 410
Y + V+ + + EGE I +LGENG GKTT +RM+A LL PDS + V I
Sbjct: 10 SYGSKVQAVRDVSFEAEEGE-----ITGLLGENGAGKTTLLRMIATLLIPDSGK---VTI 61
Query: 411 PEFNVSYKP----QKISPKFQS-------TVR-HL-----LHQKIRDSYTHPQFVSDVMK 453
+ P +KI F T R +L L+ R ++++ K
Sbjct: 62 DGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRK--EIKARIAELSK 119
Query: 454 PLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF 513
L + + +D+ V S G Q+VA+ L I ++DEP++ LD I + F
Sbjct: 120 RLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLD----IRTRRKFHDF 175
Query: 514 ILHAK---KTAFVVEHDFIMATYLADRVIV 540
I K + H L DRVIV
Sbjct: 176 IKQLKNEGRAVIFSSHIMQEVEALCDRVIV 205
|
Length = 245 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 67/214 (31%), Positives = 98/214 (45%), Gaps = 32/214 (14%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPDWQEILTYFRGSELQNYFTR 158
RPG+VL ++G NG GKST LK L+G+L P+ G N P L + EL +
Sbjct: 25 RPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVP-----LNSWPPEELARH--- 76
Query: 159 ILEDNLKAIIKPQYVD-HIPKAVQ-----GNVGQVLDQKDERDMK-ADLCTDL-DLNQVI 210
+A++ PQ P VQ G + ++ E D + A DL+ +
Sbjct: 77 ------RAVL-PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 211 DRNVGDLSGGELQRFAIAVV------AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
R+ LSGGE QR +A V V + DEP+S LD+ + ++ R L R
Sbjct: 130 GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR 189
Query: 265 PNSYVIVVEHDLSVLDYLSDFICCLY-GKPGAYG 297
V+ V HDL++ +D I L+ G+ A G
Sbjct: 190 EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASG 223
|
Length = 259 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 38/201 (18%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
G+ LG+VG +G GKST ++LAG KP+ G I G L
Sbjct: 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSG---------SI--LLDGKPLAP------ 73
Query: 161 EDNLKAIIKP-QYV-DHIPKAV--QGNVGQVLD-------QKDERDMKADLCTDLDLNQ- 208
+ KA +P Q V ++ + VG++L + A+L + L
Sbjct: 74 KKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS 133
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL----- 263
+DR +LSGG+ QR AIA + ++ + DEP+S LDV AQ++ LL
Sbjct: 134 FLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV---SVQAQILNLLLELKKE 190
Query: 264 RPNSYVIVVEHDLSVLDYLSD 284
R +Y + + HDL++++++ D
Sbjct: 191 RGLTY-LFISHDLALVEHMCD 210
|
Length = 252 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 2e-17
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 31/216 (14%)
Query: 81 KDTTHRYGPNTFKLHRLPVP-RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN-NPP 138
D T YG + + G++ GL+G NG GK+T L+++A L P+ G+ +
Sbjct: 5 TDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGV 64
Query: 139 DWQE----------ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL 188
D +L RG Y +NLK + +
Sbjct: 65 DTVRDPSFVRRKIGVLFGERGL----YARLTARENLKYF--------------ARLNGLS 106
Query: 189 DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
++ + + A+L L L + +DR VG+ S G Q+ AIA V + I + DEP+S LD
Sbjct: 107 RKEIKARI-AELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165
Query: 249 VKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSD 284
++ R K ++ L VI H + ++ L D
Sbjct: 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCD 201
|
Length = 245 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 3e-17
Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 33/197 (16%)
Query: 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEF-NVSY 417
+ ++ G+ I ++G NG GK+T +++LAG L P S V++ E + Y
Sbjct: 338 LKDLSFRIDRGD-----RIAIVGPNGAGKSTLLKLLAGELGPLS---GTVKVGETVKIGY 389
Query: 418 KPQKISPKFQSTVRHLLHQK-----IRDSY--THPQFVSDVMKPLLIEQ-LMDQEVVNLS 469
Q L K + + + Q V + ++ V LS
Sbjct: 390 FDQHRD--------ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLS 441
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD-- 527
GGE R+ L L +P ++ L+DEP+ +LD E + + F + T +V HD
Sbjct: 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRY 497
Query: 528 FIMATYLADRVIVYEGQ 544
F+ A R+ + E +
Sbjct: 498 FLDRV--ATRIWLVEDK 512
|
Length = 530 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 8e-17
Identities = 59/198 (29%), Positives = 90/198 (45%), Gaps = 29/198 (14%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
+ L + +GEF +LG +G GKTT +RM+AG +P S ++ D+ +V
Sbjct: 23 DISLDIKKGEFV-----TLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDI----TDVP 73
Query: 417 YKPQK--ISPKFQS-------TVRH-----LLHQKIRDSYTHPQFVSDVMKPLLIEQLMD 462
P+K I FQS TV L +K V + ++ + +E D
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD 131
Query: 463 QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF 522
++ LSGG+ QRVAL L + L+DEP + LD++ R K +K T
Sbjct: 132 RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFV 191
Query: 523 VVEHDFIMATYLADRVIV 540
V HD A ++DR+ V
Sbjct: 192 YVTHDQEEALAMSDRIAV 209
|
Length = 352 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 8e-17
Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 20/206 (9%)
Query: 357 KTQGNFKLKVVEGEFT-DSQIIVMLGENGTGKTTFIRMLAGLLKPD----SVEDSDVEIP 411
K +F LK+ +F + ++ + G +G GK+T +R +AGL KPD + + +
Sbjct: 8 KRLPDFTLKI---DFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDS 64
Query: 412 EFNVSYKPQ--KISPKFQS-------TVRHLLHQKIRDSYTHP--QFVSDVMKPLLIEQL 460
++ PQ KI FQ VR L ++ V +++ L ++ L
Sbjct: 65 RKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHL 124
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKT 520
+++ LSGGE QRVAL L ++ L+DEP + LD R+ +K+ +
Sbjct: 125 LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP 184
Query: 521 AFVVEHDFIMATYLADRVIVYE-GQP 545
V HD A YLADR++V E G+
Sbjct: 185 VIFVTHDLSEAEYLADRIVVMEDGRL 210
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-16
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 30/199 (15%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFN---- 414
+ L + +G+ ++GE+G+GK+T + ++ L K DS V + E P N
Sbjct: 16 DLNLTIEKGKM-----YAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKA 70
Query: 415 VSYKPQKISPKFQS-------TVRH-----LLHQKIRDSYTHPQFVSDVMKPLLIEQLMD 462
++ +K+ FQ+ TV L ++K+ + + ++ + + +
Sbjct: 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKK-EKREKKKEALEKVGLNLKLK 129
Query: 463 QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF--ILHAKKT 520
Q++ LSGGE QRVAL + KP + L DEP+ LD + R +V+ + KT
Sbjct: 130 QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNR---DEVLDLLLELNDEGKT 186
Query: 521 AFVVEHDFIMATYLADRVI 539
+V HD +A ADRVI
Sbjct: 187 IIIVTHDPEVAK-QADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 1e-16
Identities = 58/215 (26%), Positives = 85/215 (39%), Gaps = 57/215 (26%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
+ L V EGEF + ++G +G GK+T +R++AGL +P S V+ V P +
Sbjct: 22 DISLSVEEGEF-----VALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRG 76
Query: 417 YKPQK--------------ISPKFQ--------STVRHLLH----QKIRDSYTHPQFVSD 450
Y Q+ + + Q LL ++Y H
Sbjct: 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPH------ 130
Query: 451 VMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVI 510
LSGG QRVAL L D+ L+DEP + LD+ R + +
Sbjct: 131 ----------------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174
Query: 511 KRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545
KT +V HD A +LADRV+V +P
Sbjct: 175 LDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARP 209
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 75/266 (28%), Positives = 124/266 (46%), Gaps = 37/266 (13%)
Query: 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSD 407
+ YP N LK V E + + + +LG NG+GK+T ++L GLLKP S ++
Sbjct: 15 FSYPNSE----NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG 70
Query: 408 VEIPEFNVSYKPQKISPKFQ--------STVRH----LLHQKIRDSYTHPQFVSDVMKPL 455
+ I + N+ +KI FQ +TV L K + D+ K +
Sbjct: 71 ITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKV 130
Query: 456 LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515
+E +D+E NLSGG+ QRVA+ L +I + DE ++ LD + + + IK+ ++
Sbjct: 131 GMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK----REIKKIMV 186
Query: 516 H----AKKTAFVVEHDFIMATYLADRVIVY-EGQPSVDCVANA-PQSLLTGMN-LFLSHL 568
KKT + HD A LAD+VIV+ EG+ +A P+ +L L + +
Sbjct: 187 DLRKTRKKTLISITHDMDEAI-LADKVIVFSEGK----LIAQGKPKEILNNKEILEKAKI 241
Query: 569 DITFRRDPTNFRPRINKLDSTKDRDQ 594
D F ++ +D T + ++
Sbjct: 242 DSPFIYK---LSKKLKGIDPTYNEEE 264
|
Length = 271 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 3e-16
Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 28/206 (13%)
Query: 357 KTQGNFK-LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIP 411
K G+F+ L V E ++ +LG +G+GK+T +R++AGL +PDS + D
Sbjct: 8 KRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT-- 65
Query: 412 EFNVSYKPQKISPKFQ--STVRHL---------LHQKIRDSYTHPQFVSDVMKPLLIEQL 460
V + +KI FQ + +HL L + V ++++ + +E L
Sbjct: 66 --RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL 123
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI--LH-- 516
D+ LSGG+ QRVAL L + L+DEP LD++ R K ++ ++ LH
Sbjct: 124 GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVR----KELRSWLRKLHDE 179
Query: 517 AKKTAFVVEHDFIMATYLADRVIVYE 542
T V HD A +ADR++V
Sbjct: 180 VHVTTVFVTHDQEEAMEVADRIVVMS 205
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 9e-16
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 21/187 (11%)
Query: 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159
PG + GL+G NG GKST L++LAG L+P+ G + G +L +R
Sbjct: 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVD-----------LAGVDLHG-LSRR 71
Query: 160 LEDNLKAIIKPQYVDHIPKAVQGNV--GQV-------LDQKDERDMKADLCTDLDLNQVI 210
A+++ +P V+ V G++ D + + +L+ +
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA 131
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
DR++ LSGGE QR +A Q ++ + DEP+++LDV+ +L+ +VR L V+
Sbjct: 132 DRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191
Query: 271 VVEHDLS 277
HDL+
Sbjct: 192 AALHDLN 198
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 9e-16
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 32/199 (16%)
Query: 365 KVVEG-EFT--DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQK 421
+ V+G FT ++ +LG NG GKTT +RMLAGLL+PD + F+V +P +
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAE 75
Query: 422 ISPK--FQS---------TVRHL------LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQE 464
+ F S T R L+ D T + ++ L +E+L+D+
Sbjct: 76 ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT--ARLEELADRLGMEELLDRR 133
Query: 465 VVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK---KTA 521
V S G Q+VA+ L + L+DEP+ LD ++A + ++ FI + K
Sbjct: 134 VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD----VMATRALREFIRQLRALGKCI 189
Query: 522 FVVEHDFIMATYLADRVIV 540
H L DRV+V
Sbjct: 190 LFSTHIMQEVERLCDRVVV 208
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 78/324 (24%), Positives = 130/324 (40%), Gaps = 57/324 (17%)
Query: 81 KDTTHRYGPNTFKLHRLPVP-RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNN- 136
K+ +G + L + + G+ + L+G +G GKST L+++AG +P G +
Sbjct: 7 KNVRKSFG-SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGR 65
Query: 137 -----PPDWQEILTYFRGSELQNYFTRIL------EDNLKAIIKPQYVDHIPKAVQGNVG 185
PP+ + I F QNY L +N I + +PKA
Sbjct: 66 DVTDLPPEKRGIAMVF-----QNY---ALYPHMTVYEN---IAFGLKLRGVPKAE----- 109
Query: 186 QVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSS 245
D+R + L L +++R LSGG+ QR A+A V+ ++++ DEP S
Sbjct: 110 -----IDKRVKEVAKL--LGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLS 162
Query: 246 YLDVKQRLKAAQVVRSLL-RPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFS 304
LD K R+ ++ L R + I V HD L+D I + G + +
Sbjct: 163 NLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND-----GRIQQVGT 217
Query: 305 VREGI-----NIFLAGFV--PTENL---RFRDESLTFRVAETPQESAEEIETYARYKYPT 354
E + N+F+AGF+ P N + + + E + + E++ R
Sbjct: 218 PLE-LYERPANLFVAGFIGSPPMNFLKAEVKADGNGLSIPEDKKVALEQVILGIRP-EHI 275
Query: 355 MVKTQGNFKLKVVEGEFTDSQIIV 378
+ G V E S+ IV
Sbjct: 276 SLSASGIILGTVEVVEPLGSETIV 299
|
Length = 338 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 1e-15
Identities = 59/201 (29%), Positives = 85/201 (42%), Gaps = 34/201 (16%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
+V G+ G +G GKST L+ +AG KP+ G G +L
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTI-----------VLNG--------TVLF 62
Query: 162 DNLKAIIKPQYVDHIPKAVQG-------NVGQ-------VLDQKDERDMKADLCTDLDLN 207
D+ K I P I Q NV + +++R +L L L+
Sbjct: 63 DSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD 122
Query: 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPN 266
+++R LSGGE QR A+A E+ + DEP S LD RL+ ++ + N
Sbjct: 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182
Query: 267 SYVIVVEHDLSVLDYLSDFIC 287
VI V HDLS +YL+D I
Sbjct: 183 IPVIFVTHDLSEAEYLADRIV 203
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 1e-15
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 51/194 (26%)
Query: 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRF--------NNPPDWQEILTY---------- 146
+ GL+G NG GK+T ++ILA P+ G P + + Y
Sbjct: 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPN 86
Query: 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDL 206
F E +Y LK I + + V +VL+ ++L
Sbjct: 87 FTVREFLDYIAW-----LKGIPSKE----VKARVD----EVLE-------------LVNL 120
Query: 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-- 264
+ +G LSGG +R IA V + I + DEP++ LD ++R++ R+LL
Sbjct: 121 GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIR----FRNLLSEL 176
Query: 265 -PNSYVIVVEHDLS 277
+ VI+ H +
Sbjct: 177 GEDRIVILSTHIVE 190
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-15
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 45/199 (22%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFN-------NPPDWQEILTY----- 146
+ GQ+ LVG +G GKST L +L G L P G R N +P W++ +++
Sbjct: 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404
Query: 147 --FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL 204
F G+ + +N+ + +P D + LDQ A L +
Sbjct: 405 YLFAGT---------IRENI-LLARPDASDE-------EIIAALDQ-------AGLLEFV 440
Query: 205 DLNQVIDRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVR 260
+D +G+ LSGG+ QR A+A + A + + DEP+++LD + Q ++
Sbjct: 441 PKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQ 500
Query: 261 SLLRPNSYVIVVEHDLSVL 279
L + V+V+ H L
Sbjct: 501 ELAK-QKTVLVITHRLEDA 518
|
Length = 559 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-15
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 30/198 (15%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQE------------------- 142
PG+ +GLVG NG GKST LKILAG+L+P+ G P +
Sbjct: 28 PGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYV 87
Query: 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCT 202
I + EL + + + ++ G L+ + E +
Sbjct: 88 IEGFGELRELLAELEEAYALLADPDD--ELLAELEALLEELDGWTLEARAEEALLG---- 141
Query: 203 DLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL 262
L DR V LSGG +R A+A ++ ++ + DEP+++LD++ + L
Sbjct: 142 -LGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESI---EWLEDYL 196
Query: 263 LRPNSYVIVVEHDLSVLD 280
R VIVV HD LD
Sbjct: 197 KRYPGTVIVVSHDRYFLD 214
|
Length = 530 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 2e-15
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 27/188 (14%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRF------NNPPDWQEILTYFR---GSELQ 153
G++ ++G +G GKST L I+ K + G+ P + ++ + R G Q
Sbjct: 24 GKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQ 83
Query: 154 NYFTRILEDNLKAIIKPQYVD---HIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI 210
N+ A+I+ + V+ + + L +K++R+ K + + LN +
Sbjct: 84 NF----------ALIENETVEENLDLGL-----KYKKLSKKEKREKKKEALEKVGLNLKL 128
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
+ + +LSGGE QR A+A ++ + + DEP+ LD K R + ++ L +I
Sbjct: 129 KQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTII 188
Query: 271 VVEHDLSV 278
+V HD V
Sbjct: 189 IVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 2e-15
Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 58/214 (27%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
N +++ GEF + ++G +G+GK+T + +L GL KP S +V I +++ +
Sbjct: 25 NLEIE--AGEF-----VAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLINGKDLTKLSE 74
Query: 421 KISPK---------FQS-------TVRH--LLHQKIRDSYTHPQFVSDVMKPLLIEQLMD 462
K K FQ+ TV L I S + E+L+
Sbjct: 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG-------KSAGRRKRAAEELL- 126
Query: 463 QEVVN------------LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVI 510
EV+ LSGG+ QRVA+ L I L DEP+ LDS+ AK +
Sbjct: 127 -EVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK----TAKEV 181
Query: 511 KRFILH----AKKTAFVVEHDFIMATYLADRVIV 540
+ KT +V HD +A Y ADRVI
Sbjct: 182 LELLRELNKERGKTIIMVTHDPELAKY-ADRVIE 214
|
Length = 226 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 60/205 (29%), Positives = 91/205 (44%), Gaps = 35/205 (17%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
+ L V +GEF + +LG +G GK+T +R++AGL KP S ++ V P ++
Sbjct: 21 DINLSVEKGEF-----VAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIG 75
Query: 417 YKPQKISPKFQSTVRHLL-HQKIRDSYTHP---QFVSDVMKPLLIEQLMDQEVVNL---- 468
Y Q+ + LL + D+ + S ++L+ E+V L
Sbjct: 76 YVFQEDA---------LLPWLTVLDNVALGLELRGKSKAEARERAKELL--ELVGLAGFE 124
Query: 469 -------SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521
SGG QRVA+ L + L+DEP LD+ R + R +KT
Sbjct: 125 DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTV 184
Query: 522 FVVEHDFIMATYLADRVIVYEGQPS 546
+V HD A YLADRV+V +P
Sbjct: 185 LLVTHDVDEAVYLADRVVVLSNRPG 209
|
Length = 248 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-15
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 55/209 (26%)
Query: 380 LGENGTGKTTFIRMLAGLLKPDS---VEDSDVEIPEFNVSYKPQKISPKFQSTVRHLL-- 434
+G NG GK+T +++LAG L+PDS + + Y Q+ + TV +
Sbjct: 35 VGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRV-----GYLSQEPPLDPEKTVLDYVIE 89
Query: 435 --------------------------------HQKIRDSYTHPQFVSDVMKPLLIEQLMD 462
+ D +T + + L D
Sbjct: 90 GFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D 148
Query: 463 QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF 522
+ V +LSGG +RVAL L + D+ L+DEP+ +LD + + + ++ ++ T
Sbjct: 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD----LESIEWLEDYLKRYPGTVI 204
Query: 523 VVEHD--FI--MATYLAD----RVIVYEG 543
VV HD F+ +AT++ + ++ Y+G
Sbjct: 205 VVSHDRYFLDNVATHILELDRGKLTPYKG 233
|
Length = 530 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 3e-15
Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 19/207 (9%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS---------VEDSDVEIP 411
N L V GEF I + G +G GK+T ++++A L+ P S V E
Sbjct: 21 NISLSVRAGEF-----IAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAY 75
Query: 412 EFNVSYKPQKISPKFQSTVRH--LLHQKIRDSYTHPQ-FVSDVMKPLLIEQLMDQEVVNL 468
VSY Q F TV + +IR+ + + + L + ++ + + L
Sbjct: 76 RQQVSYCAQT-PALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITEL 134
Query: 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528
SGGE QR+AL L I L+DE ++ LD + ++I R++ + HD
Sbjct: 135 SGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK 194
Query: 529 IMATYLADRVIVYEGQPSVDCVANAPQ 555
A AD+VI + + A Q
Sbjct: 195 DQAIRHADKVITLQ-PGHAGEMQEARQ 220
|
Length = 223 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 3e-15
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 52/226 (23%)
Query: 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----V 403
+ YP + N L + GE + ++G G+GK+T +++LAGL KP S +
Sbjct: 9 SFSYPNQEIPALDNVSLTIRAGEK-----VAIIGRVGSGKSTLLKLLAGLYKPTSGSVLL 63
Query: 404 EDSDV-EIPEF----NVSYKPQKISPKFQSTVRHLLHQKIRDSYT--HPQFVSD-----V 451
+ +D+ ++ N+ Y PQ + L + +RD+ T P D
Sbjct: 64 DGTDIRQLDPADLRRNIGYVPQDV---------TLFYGTLRDNITLGAP-LADDERILRA 113
Query: 452 MKPLLIEQL-------MDQEV----VNLSGGELQRVALC-LCLGKPADIYLIDEPSAYLD 499
+ + +D ++ LSGG+ Q VAL L P I L+DEP++ +D
Sbjct: 114 AELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP-ILLLDEPTSAMD 172
Query: 500 --SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543
SE+R+ +++ + KT ++ H + L DR+IV +
Sbjct: 173 MNSEERLKER--LRQLLGD--KTLIIITHRPSLLD-LVDRIIVMDS 213
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 3e-15
Identities = 42/184 (22%), Positives = 69/184 (37%), Gaps = 58/184 (31%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
+ L + G+ I ++G NG GK+T ++++AG L+PD
Sbjct: 18 DISLTINPGD-----RIGLVGRNGAGKSTLLKLIAGELEPDE------------------ 54
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
V ++ Y EQL SGGE R+AL
Sbjct: 55 -------GIVTW--GSTVKIGY--------------FEQL--------SGGEKMRLALAK 83
Query: 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
L + ++ L+DEP+ +LD E + +K + T +V HD +A ++I
Sbjct: 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVATKIIE 139
Query: 541 YEGQ 544
E
Sbjct: 140 LEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 4e-15
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 45/229 (19%)
Query: 91 TFKLHRLPVP---------RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQ 141
+F V + G+ LGLVG +G GKST + + G LKP G
Sbjct: 10 SFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI------- 62
Query: 142 EILTYFRGSELQNYFTRILEDNLKAIIKPQYV---------------DHIPKAVQGNVGQ 186
F G +L R+ + K I Q V + I + ++ +
Sbjct: 63 ----IFDGKDLLKLSRRLRKIRRKEI---QMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL 115
Query: 187 VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
+ + + L +V++R +LSGG+ QR AIA N ++ + DEP+S
Sbjct: 116 SKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175
Query: 247 LDVKQRLKAAQVVRSLLR----PNSYVIVVEHDLSVLDYLSDFICCLYG 291
LDV AQ++ L + ++ + HDL V+ ++D + +Y
Sbjct: 176 LDV---SVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYA 221
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 7e-15
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 16/143 (11%)
Query: 376 IIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFN------VSYKPQKISPKFQ 427
+ +LG NG GKTT +R+LA L P S + ++ + + Y PQ+
Sbjct: 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPN 86
Query: 428 STVRHLLH-----QKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVAL-CLC 481
TVR L + I + V +V++ + + +++ +LSGG +RV +
Sbjct: 87 FTVREFLDYIAWLKGIPSKEVKAR-VDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQAL 145
Query: 482 LGKPADIYLIDEPSAYLDSEQRI 504
+G P I ++DEP+A LD E+RI
Sbjct: 146 VGDP-SILIVDEPTAGLDPEERI 167
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 7e-15
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 39/210 (18%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV------EIPEF 413
V GE +I G NG GKTT +++G L+P S + D+ EI
Sbjct: 21 FSVRPGEIH--GLI---GPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 414 NVSYKPQKISPKFQS-TVRHLL---HQKIRDSYTHPQFVSDVMKPL------LIEQL--- 460
+ Q F TV + Q S + L+E++
Sbjct: 76 GIGRTFQIPRL-FPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA 134
Query: 461 --MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK 518
D+ LS G+ +R+ + L + L+DEP+A L+ E+ A++I+ L +
Sbjct: 135 DLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE--LRER 192
Query: 519 KTAFV-VEHD--FIMATYLADRVIV-YEGQ 544
+ VEHD +M+ LADRV V +G+
Sbjct: 193 GITVLLVEHDMDVVMS--LADRVTVLDQGR 220
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 8e-15
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 35/191 (18%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
G++ L+G NG GKST LK A L P G + + +R L
Sbjct: 27 TGKITALIGPNGCGKSTLLKCFARLLTPQSG---------TVF--LGDKPISMLSSRQLA 75
Query: 162 DNLKAIIKPQYVDHIPKAVQ----------------GNVGQVLDQKDERDMKADLCTDLD 205
L A++ ++ P+ + G + + + + M+
Sbjct: 76 RRL-ALLPQHHL--TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAME-----QTR 127
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP 265
+N + DR + DLSGG+ QR +A+V Q+ + + DEP++YLD+ +++ +++R L
Sbjct: 128 INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ 187
Query: 266 NSYVIVVEHDL 276
V+ V HDL
Sbjct: 188 GKTVVTVLHDL 198
|
Length = 255 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 1e-14
Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 54/229 (23%)
Query: 81 KDTTHRYGPNTFKLHRLPVP----RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RF 134
K+ + YG K+ L G+ + +VG +G GKST L IL G +P G R
Sbjct: 4 KNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV 63
Query: 135 NNPPDWQEI-------LTYFRGSEL----QNY-----FTRILEDNLKAIIKPQYVDHIPK 178
+ +I L FR + Q++ T +N + P + +PK
Sbjct: 64 DG----TDISKLSEKELAAFRRRHIGFVFQSFNLLPDLT--ALEN---VELPLLLAGVPK 114
Query: 179 AVQGNVGQVLDQKDERDMKA-DLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEI 237
ER +A +L + L ++ +LSGG+ QR AIA + +I
Sbjct: 115 K-------------ERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI 161
Query: 238 YMFDEPSSYLDVKQRLKAAQVVRSLLRP-----NSYVIVVEHDLSVLDY 281
+ DEP+ LD + + V LLR + ++VV HD + +Y
Sbjct: 162 ILADEPTGNLDS----ETGKEVMELLRELNKEAGTTIVVVTHDPELAEY 206
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-14
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 48/185 (25%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG---------RFNNPPD---------WQE 142
RPG+V L+G NG GKST +KIL+G P+ G F++P D QE
Sbjct: 32 RPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQE 91
Query: 143 I-----LTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMK 197
+ L+ + E N+ ++ P G ++D+K R
Sbjct: 92 LSLVPNLS-------------VAE-NI-------FLGREPTRRFG----LIDRKAMRRRA 126
Query: 198 ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQ 257
+L L L+ D VGDLS + Q IA +A + + DEP++ L VK+ +
Sbjct: 127 RELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186
Query: 258 VVRSL 262
++R L
Sbjct: 187 LIRRL 191
|
Length = 500 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-14
Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 21/200 (10%)
Query: 362 FKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYKP 419
F L V +GE I+ ++G +G GK+T + ++AG ++P S ++ +D +P
Sbjct: 17 FDLNVADGE-----IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRP 71
Query: 420 QKISPKFQS-------TVRHL----LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNL 468
+S FQ TVR LH ++ + + V D + + I +D+ L
Sbjct: 72 --VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQL 129
Query: 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528
SGG+ QRVAL CL +P I L+DEP + LD R ++K+ ++T +V H
Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
Query: 529 IMATYLADRVIVYE-GQPSV 547
A +A ++ V G+ V
Sbjct: 190 SDARAIASQIAVVSQGKIKV 209
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 1e-14
Identities = 63/218 (28%), Positives = 94/218 (43%), Gaps = 45/218 (20%)
Query: 84 THRYGPNTFKLHRLPVP-RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNNPPDW 140
+ Y LH + + R G+ L L G +G GK+T LK+L G L P+ G R
Sbjct: 8 SKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAG---- 63
Query: 141 QEILTYFRGSEL-----------QNY---FTRILEDNLKAIIKPQYVDHIPK-AVQGNVG 185
+++ RG +L Q++ R + +N+ A+ P V + +Q VG
Sbjct: 64 EDVNRL-RGRQLPLLRRRIGVVFQDFRLLPDRTVYENV-AL--PLEVRGKKEREIQRRVG 119
Query: 186 QVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSS 245
L Q + L D LSGGE QR AIA V + + + DEP+
Sbjct: 120 AALRQ-------------VGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTG 166
Query: 246 YLDVKQRLKAAQVVRSLLRPNSY---VIVVEHDLSVLD 280
LD + +++ L R N VIV HDLS++D
Sbjct: 167 NLDPDL---SERILDLLKRLNKRGTTVIVATHDLSLVD 201
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 49/214 (22%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
N L++ GE + ++GE+G+GK+T R+LAGL KP S + +
Sbjct: 25 NVSLEIERGE-----TLGIVGESGSGKSTLARLLAGLEKPSSGS----------ILLDGK 69
Query: 421 KISPKFQSTVRHLLHQKI-RDSYT--HPQF-----VSDVMKPL-------LIEQLMDQ-- 463
++PK ++ + Q + +D Y+ +P+ +S+ ++P I +L+DQ
Sbjct: 70 PLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVG 129
Query: 464 ---EVVN-----LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515
++ LSGG+ QR+A+ L + ++DEP++ LD V A+++ L
Sbjct: 130 LPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV---SVQAQILNLL-L 185
Query: 516 HAKK----TAFVVEHDFIMATYLADRVIV-YEGQ 544
KK T + HD + ++ DR+ V GQ
Sbjct: 186 ELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQ 219
|
Length = 252 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 73/247 (29%)
Query: 70 IQIINLPKDLDKDTTHRYGPNTFK-LHRLPVP-RPGQVLGLVGTNGIGKSTALKILAGKL 127
+QI NL T Y T + L + G++ GL+G NG GK+T LK+L G+L
Sbjct: 1 LQIRNL--------TKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52
Query: 128 KPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQV 187
+P G A I + KA + ++G
Sbjct: 53 RPTSGT--------------------------------AYINGYSIRTDRKAARQSLG-Y 79
Query: 188 LDQKD----------------------ERDMKAD---LCTDLDLNQVIDRNVGDLSGGEL 222
Q D + ++K + L L L ++ LSGG
Sbjct: 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMK 139
Query: 223 QR--FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLD 280
++ AIA++ + + DEP+S LD R ++ +R +I+ H + +
Sbjct: 140 RKLSLAIALIG--GPSVLLLDEPTSGLDPASRRAIWDLILE-VRKGRSIILTTHSMDEAE 196
Query: 281 YLSDFIC 287
L D I
Sbjct: 197 ALCDRIA 203
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 3e-14
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 64/223 (28%)
Query: 70 IQIINLPKDLDKDTTHRYGPNT------FKLHRLPVPRPGQVLGLVGTNGIGKSTALKIL 123
I++ NL + RYG T + G++ GL+G NG GK+T +KI+
Sbjct: 1 IEVRNL--------SKRYGKKTALDDISLTV------EKGEIYGLLGPNGAGKTTLIKII 46
Query: 124 AGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGN 183
G LKP+ G EI ++L ++K P+ V+
Sbjct: 47 LGLLKPDSG---------EI--------------KVLGKDIKK---------EPEEVKRR 74
Query: 184 VGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEP 243
+G + ++ L +L + + + LSGG QR A+A + + E+ + DEP
Sbjct: 75 IGYLPEE-------PSLYENLTVRENLK-----LSGGMKQRLALAQALLHDPELLILDEP 122
Query: 244 SSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFI 286
+S LD + R + +++R L + +++ H L + L D +
Sbjct: 123 TSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRV 165
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 3e-14
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 25/186 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
G + +VG NG GKST LK+LAG+L P G + + YF Q+
Sbjct: 346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVK--IGYFD----QHRDELDP 399
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220
+ + + + D + V+ +G+ + ++ VG LSGG
Sbjct: 400 DKTVLEELSEGFPDGDEQEVRAYLGRFG-----------FTGED-----QEKPVGVLSGG 443
Query: 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLD 280
E R +A + +Q + + DEP+++LD++ + +LL V++V HD LD
Sbjct: 444 EKARLLLAKLLLQPPNLLLLDEPTNHLDIESL---EALEEALLDFEGTVLLVSHDRYFLD 500
Query: 281 YLSDFI 286
++ I
Sbjct: 501 RVATRI 506
|
Length = 530 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 3e-14
Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 41/215 (19%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSEL-------- 152
RPG++ GL+G NG GK+T +++G L+P G F G ++
Sbjct: 24 RPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV-----------LFDGEDITGLPPHEI 72
Query: 153 ---------QNYFTRILE-----DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA 198
Q R+ +N+ + + + ER
Sbjct: 73 ARLGIGRTFQI--PRLFPELTVLENVMV---AAQARTGSGLLLARARREEREARERAE-- 125
Query: 199 DLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV 258
+L + L + DR G+LS G+ +R IA + ++ + DEP++ L+ ++ + A++
Sbjct: 126 ELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL 185
Query: 259 VRSLLRPNSYVIVVEHDLSVLDYLSDFICCL-YGK 292
+R L V++VEHD+ V+ L+D + L G+
Sbjct: 186 IRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 3e-14
Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 28/209 (13%)
Query: 357 KTQGNFKLKVVEG---EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD---------SVE 404
KT V+ +I +LG NG GKTT ++ML G L+P S+
Sbjct: 8 KTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR 67
Query: 405 DSDVEIPEFNVSYKPQK--ISPKFQSTVR-HL-LHQKIRDSYTHPQF--VSDVMKPLLIE 458
+ ++ Y PQ + + TVR HL + +++ V +++ L +
Sbjct: 68 TDRKAARQ-SLGYCPQFDALFDEL--TVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT 124
Query: 459 QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK 518
++ LSGG ++++L + L + L+DEP++ LD R + I IL +
Sbjct: 125 DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR----RAIWDLILEVR 180
Query: 519 K--TAFVVEHDFIMATYLADRV-IVYEGQ 544
K + + H A L DR+ I+ +G+
Sbjct: 181 KGRSIILTTHSMDEAEALCDRIAIMSDGK 209
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 3e-14
Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 39/205 (19%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFN--- 414
V GE + ++G +G GK+T + +L G + P + + V + + +
Sbjct: 339 RPVSFTVPPGE-----RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS 393
Query: 415 ----VSYKPQKISPK-FQSTVR------------HLLHQKIRDSYTHPQFVSDVMKPLLI 457
+++ PQ P F T+ + + + + +FV+ + P +
Sbjct: 394 WRDQIAWVPQH--PFLFAGTIAENIRLARPDASDAEIREALERAGLD-EFVAAL--PQGL 448
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFIL 515
+ + + LSGG+ QR+AL + A + L+DEP+A+LD +E ++ A ++ L
Sbjct: 449 DTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEA--LRA--L 504
Query: 516 HAKKTAFVVEHDFIMATYLADRVIV 540
+T +V H + LADR++V
Sbjct: 505 AQGRTVLLVTHR-LALAALADRIVV 528
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 69/274 (25%), Positives = 109/274 (39%), Gaps = 36/274 (13%)
Query: 354 TMVKTQ-GNFK-LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI- 410
VK + G F L + + +++ +LG +G GK+T +R++AGL PD+ + +
Sbjct: 6 NNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA---GRIRLN 62
Query: 411 --PEFNVSYKPQ---KISPKFQ-------STVR------HLLHQKIRDSYTHPQFVSDVM 452
F+VS K+ FQ TV + ++ V +++
Sbjct: 63 GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELL 122
Query: 453 KPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512
+ + +E L D+ LSGG+ QRVAL L + L+DEP LD++ R + +++
Sbjct: 123 RLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182
Query: 513 FILHAKKTAFVVEHDFIMATYLADRVIVYE-GQP----SVDCVANAPQSL----LTGMNL 563
T V HD A LADRV+V G+ D V + P S G
Sbjct: 183 LHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFLGEVN 242
Query: 564 FLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAA 597
L I + L D KA
Sbjct: 243 VLPGEVILGQ---LQVGAHDIGLPLQPLPDGKAD 273
|
Length = 345 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 62/199 (31%), Positives = 87/199 (43%), Gaps = 16/199 (8%)
Query: 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD----SVEDSDVEIPE 412
+ GNF L I + G +G+GKT+ I M+AGL +PD + + E
Sbjct: 8 QRLGNFALDANF-TLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAE 66
Query: 413 FNVSYKPQK--ISPKFQS-------TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ 463
+ P+K I FQ TVR L + S QF ++ L IE L+D+
Sbjct: 67 KGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMR-AQF-DQLVALLGIEHLLDR 124
Query: 464 EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFV 523
LSGGE QRVA+ L ++ L+DEP A LD ++ ++R
Sbjct: 125 YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILY 184
Query: 524 VEHDFIMATYLADRVIVYE 542
V H LADRV+V E
Sbjct: 185 VSHSLDEVLRLADRVVVLE 203
|
Length = 352 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 5e-14
Identities = 63/213 (29%), Positives = 96/213 (45%), Gaps = 25/213 (11%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFN----- 414
L V EG + ++G NG GKTT +R + G L P + V DVE
Sbjct: 24 LSVREGSL-----VGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78
Query: 415 VSYKPQKISPKFQSTVRHLL------HQKIRDSYTHP--QFVSDVMKPLLIEQLMDQEVV 466
V+ PQ S F+ VR ++ H+ D++T V M+ + Q D+ V
Sbjct: 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT 138
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526
+LSGGE QRV L L + + L+DEP+A LD ++ ++++R + KTA H
Sbjct: 139 SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV-DDGKTAVAAIH 197
Query: 527 DFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559
D +A D +++ A P +LT
Sbjct: 198 DLDLAARYCDELVLLADGRVRA--AGPPADVLT 228
|
Length = 402 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 23/226 (10%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFN-------VSYKPQKISPK 425
+I ++G NG GK+T ++ A LL P S V D I + ++ PQ
Sbjct: 29 KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTP 88
Query: 426 FQSTVRHL--------LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVA 477
TVR L L R S V+ M+ I L D+ + +LSGG+ QR
Sbjct: 89 EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAF 148
Query: 478 LCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK-KTAFVVEHDFIMATYLAD 536
L + L + + L+DEP+ YLD ++ ++++ L+ + KT V HD A+ D
Sbjct: 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE--LNTQGKTVVTVLHDLNQASRYCD 206
Query: 537 RVIVYEGQPSVDCVANAPQSLLT-GMNLFLSHLDITFRRDPTNFRP 581
++V + P+ ++T G+ + ++ +P + P
Sbjct: 207 HLVVLANGHVMAQ--GTPEEVMTPGLLRTVFDVEAEIHPEPVSGTP 250
|
Length = 255 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 40/197 (20%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN---------NPPDWQEILTY----- 146
PG+ + LVG +G GKST L +L G + P G + W++ + +
Sbjct: 346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHP 405
Query: 147 --FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL 204
F G+ + +N+ + +P D ++ + L++ + A L
Sbjct: 406 FLFAGT---------IAENI-RLARP---DASDAEIR----EALERAGLDEFVAAL--PQ 446
Query: 205 DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL-- 262
L+ I LSGG+ QR A+A +++A + + DEP+++LD A+V+ +L
Sbjct: 447 GLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLD---AETEAEVLEALRA 503
Query: 263 LRPNSYVIVVEHDLSVL 279
L V++V H L++
Sbjct: 504 LAQGRTVLLVTHRLALA 520
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 1e-13
Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 25/219 (11%)
Query: 82 DTTHRYGPN------TFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135
+ YGP +F L PG+VLG+VG +G GK+T LK ++G+L P+ G
Sbjct: 11 GLSKLYGPGKGCRDVSFDL------YPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
Query: 136 NPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQ--GNVGQ-VLDQKD 192
+ + SE + R L + D + V GN+G+ ++
Sbjct: 65 YRMRDGQPRDLYTMSEAER---RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA 121
Query: 193 E-----RDMKADLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
R D +++++ ID SGG QR IA V + DEP+
Sbjct: 122 RHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGG 181
Query: 247 LDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSD 284
LDV + + ++R L+R V++V HDL+V L+D
Sbjct: 182 LDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAD 220
|
Length = 258 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-13
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 29/200 (14%)
Query: 88 GPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF---NNPPDW---- 140
GP K R G+VL L+G NG GKST L L G L+P G P D+
Sbjct: 4 GPEVLKGLNFAAER-GEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 141 -----QEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERD 195
Q + F+ + Q + + +D V P N+G + + R
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAADVDQD----------VAFGPL----NLGLSEAEVERRV 108
Query: 196 MKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA 255
+A T + + + +R LSGGE +R AIA ++ + DEP++ LD R +
Sbjct: 109 REA--LTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166
Query: 256 AQVVRSLLRPNSYVIVVEHD 275
++R L V++ HD
Sbjct: 167 LAILRRLRAEGMTVVISTHD 186
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 77/349 (22%), Positives = 133/349 (38%), Gaps = 49/349 (14%)
Query: 227 IAVVAVQNAEIYMFDEPSSYLD--VKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSD 284
I V+ AE + + L+A+++ +LL P ++ + VL
Sbjct: 201 IRVIKAFGAEDRELKRFEEANEELRRANLRASRL-EALLAPLMLLLSSLGTVLVLALGGF 259
Query: 285 FICCLYGKPGAYGVVTL-------PF-SVREGINIFLAGFVPTENLR-FRDESLTFRVAE 335
+ GA L P + E +++ E L DE
Sbjct: 260 LVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP 319
Query: 336 TPQESAE-EIE-TYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRM 393
P + IE + YP + + GE + ++G +G+GK+T I++
Sbjct: 320 DPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGE-----KVAIVGPSGSGKSTLIKL 374
Query: 394 LAGLLKPDSVE---DSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRD--SYTHPQFV 448
L L P S E D ++I + ++ ++I Q L IR+ + P
Sbjct: 375 LLRLYDPTSGEILID-GIDIRDISLDSLRKRIGIVSQDP--LLFSGTIRENIALGRPDAT 431
Query: 449 SDVMKPLL--------IEQL---MDQEV----VNLSGGELQRVALCLCLGKPADIYLIDE 493
+ ++ L I L D V VNLSGG+ QR+A+ L + I ++DE
Sbjct: 432 DEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDE 491
Query: 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH--DFIMATYLADRVIV 540
++ LD+E + +K+ L +T ++ H I ADR+IV
Sbjct: 492 ATSALDTETEALIQDALKK--LLKGRTTLIIAHRLSTIKN---ADRIIV 535
|
Length = 567 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 59/224 (26%), Positives = 88/224 (39%), Gaps = 43/224 (19%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP 419
G+ LK V E +++ ++G +G GK+T +R L GL+ P S E + ++
Sbjct: 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE---ILFNGVQITKLK 72
Query: 420 QKISPK--------FQ--------STVRHLLHQKIRDSYTHPQFVS-------------- 449
K K FQ S + ++L R Y + S
Sbjct: 73 GKELRKLRRDIGMIFQQFNLVPRLSVLENVLLG--RLGY-TSTWRSLFGLFSKEDKAQAL 129
Query: 450 DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509
D ++ + I Q LSGG+ QRVA+ L + I L DEP A LD E +
Sbjct: 130 DALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDI 189
Query: 510 IKRFILHAKKTAFVVEHDFIMATYLADRVI-------VYEGQPS 546
+K T V H +A ADR+I V++G S
Sbjct: 190 LKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPAS 233
|
Length = 258 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 38/212 (17%)
Query: 81 KDTTHRYGPNTFKLH-RLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR------ 133
K + YG L V PG+ L L+G +G GK+T L+++AG +P+ G
Sbjct: 4 KGLSKTYGSVRALDDLSLTVE-PGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGR 62
Query: 134 --FNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQ- 190
PP+ + I F Q+Y L +L V N+ L
Sbjct: 63 DVTGVPPERRNIGMVF-----QDY---ALFPHL--------------TVAENIAFGLKLR 100
Query: 191 ---KDERDMKADLCTDL-DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
K E + +L L +++R +LSGG+ QR A+A + + + DEP S
Sbjct: 101 GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160
Query: 247 LDVKQRLKAAQVVRSLLRPNSY-VIVVEHDLS 277
LD K R + + ++ L R I V HD
Sbjct: 161 LDAKLREELREELKELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 2e-13
Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 47/215 (21%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV-EIPEFNV 415
+F +K +GE + ++GE+G+GK+T R + GLLKP S + D+ ++
Sbjct: 25 SFSIK--KGE-----TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLR 77
Query: 416 SYKPQKISPKFQS---------TVRHLL------HQKIRDSYTHPQFVSDVMKPLLIEQL 460
+ ++I FQ T+ + H K+ + + + LL+
Sbjct: 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSK----KEARKEAVLLLLVGVG 133
Query: 461 MDQEVVN-----LSGGELQRVALCLCL-GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI 514
+ +EV+N LSGG+ QRVA+ L P + + DEP++ LD V A+++ +
Sbjct: 134 LPEEVLNRYPHELSGGQRQRVAIARALALNP-KLLIADEPTSALD---VSVQAQIL-DLL 188
Query: 515 LHAKK---TAFV-VEHDFIMATYLADRVIV-YEGQ 544
++ + + HD + +ADRV V Y G+
Sbjct: 189 KKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGK 223
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 3e-13
Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 37/234 (15%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--------NNPPDWQEILTYFRGSELQN 154
G ++G G GKS L+ +AG +KP+ G+ N PP+ ++I QN
Sbjct: 25 GDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI-----SYVPQN 79
Query: 155 Y--FTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA-DLCTDLDLNQVI 210
Y F + + N+ +K + VD K E + K ++ L ++ ++
Sbjct: 80 YALFPHMTVYKNIAYGLKKRKVD----------------KKEIERKVLEIAEMLGIDHLL 123
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY-V 269
+R LSGGE QR AIA V N +I + DEP S LDV+ + K + ++ + + V
Sbjct: 124 NRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV 183
Query: 270 IVVEHDLSVLDYLSDFICCLY-GKPGAYGVVTLPFSVREGINIFLAGFVPTENL 322
+ V HD L+D + + GK G F + N F+A F+ N+
Sbjct: 184 LHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK--KPKNEFVAEFLGFNNI 235
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 59/204 (28%), Positives = 80/204 (39%), Gaps = 56/204 (27%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNNPPDWQEILTYFRGSELQNYFTR 158
RPG+V+ ++G NG GKST L+ L+G+L P+ G R N P L + +EL R
Sbjct: 26 RPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRP-----LADWSPAEL----AR 76
Query: 159 ILEDNLKAIIKPQYVD-------------------HIPKAVQGNVGQVLDQKDERDMKAD 199
A++ PQ+ V L Q D
Sbjct: 77 RR-----AVL-PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVD------- 123
Query: 200 LCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE------IYMFDEPSSYLDVKQRL 253
L R+ LSGGE QR +A V Q E + DEP+S LD+ +
Sbjct: 124 -LAHLA-----GRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177
Query: 254 KAAQVVRSLLRPNSY-VIVVEHDL 276
++ R L VIVV HDL
Sbjct: 178 HVLRLARQLAHERGLAVIVVLHDL 201
|
Length = 258 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 3e-13
Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 46/224 (20%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSEL-------- 152
RPG+++GL+G NG GK+T ++ G KP+ G FRG ++
Sbjct: 28 RPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV-----------IFRGRDITGLPPHRI 76
Query: 153 ---------QNYFTRIL-----EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA 198
Q TR+ +N+ H + G +G+ +K+ER+ +
Sbjct: 77 ARLGIARTFQI--TRLFPGLTVLENVAVGA------HARLGLSGLLGRPRARKEEREARE 128
Query: 199 ---DLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA 255
+L + L ++ DR G+LS G+ +R IA ++ + DEP++ L+ ++ +
Sbjct: 129 RARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188
Query: 256 AQVVRSL-LRPNSYVIVVEHDLSVLDYLSDFICCL-YGKPGAYG 297
A+++R L R ++++EHD+ ++ L+D I L YG+ A G
Sbjct: 189 AELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEG 232
|
Length = 250 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 4e-13
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 37/205 (18%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNN-------PPDWQEILTYFRGSE 151
G+ + ++G +G GKST L++LAG P G N +E ++ ++
Sbjct: 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVL--TQ 419
Query: 152 LQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVID 211
+ F+ L DNL+ + P D + L Q + ++
Sbjct: 420 RVHLFSGTLRDNLR-LANPDASDE-------ELWAALQQVGLEKLL------ESAPDGLN 465
Query: 212 RNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL---LR 264
+G+ LSGGE +R A+A + +A +++ DEP+ LD + QV+ L
Sbjct: 466 TWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLD---PITERQVLALLFEHAE 522
Query: 265 PNSYVIVVEHDLSVLDYLSDFICCL 289
+ +++V H L L+ + D I L
Sbjct: 523 GKT-LLMVTHRLRGLERM-DRIIVL 545
|
Length = 573 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 4e-13
Identities = 62/242 (25%), Positives = 102/242 (42%), Gaps = 43/242 (17%)
Query: 333 VAETPQESAEEIETYA-----------RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVML 380
+ + E E A + YP K NF L + +GE + +L
Sbjct: 316 ILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEK-----VAIL 370
Query: 381 GENGTGKTTFIRMLAGLLKPD--SVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKI 438
G +G+GK+T +++LAG P S+ + VEI + + IS Q HL +
Sbjct: 371 GRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRV--HLFSGTL 428
Query: 439 RDSYT------HPQFVSDVMKPLLIEQLMDQEVV-----------NLSGGELQRVALCLC 481
RD+ + + ++ + +E+L++ LSGGE +R+AL
Sbjct: 429 RDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488
Query: 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK-KTAFVVEHDFIMATYLADRVIV 540
L A ++L+DEP+ LD I +V+ HA+ KT +V H DR+IV
Sbjct: 489 LLHDAPLWLLDEPTEGLD---PITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIV 544
Query: 541 YE 542
+
Sbjct: 545 LD 546
|
Length = 573 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 4e-13
Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 47/211 (22%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEF----- 413
+ L++ GE + ++G +G+GK+T +++L GL KP + V++ +
Sbjct: 491 DLSLEIPPGEK-----VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545
Query: 414 --NVSYKPQKISPKFQSTVRHLLHQKIRDSYT-HPQFVSD--VMKPL-------LIEQL- 460
V Y Q L IR++ +D +++ IE L
Sbjct: 546 RRQVGYVLQDP---------FLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 461 --MDQEV----VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKR 512
D V NLSGG+ QR+AL L I L+DE ++ LD +E I+ + +
Sbjct: 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN--LLQ 654
Query: 513 FILHAKKTAFVVEHDFIMATYLADRVIVYEG 543
+ +T ++ H ADR+IV +
Sbjct: 655 ILQ--GRTVIIIAHRLSTIRS-ADRIIVLDQ 682
|
Length = 709 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 4e-13
Identities = 68/217 (31%), Positives = 111/217 (51%), Gaps = 51/217 (23%)
Query: 356 VKTQGNFKLKVVEG---EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPE 412
K+ K +V++G + D + IV++G +G GK+T +RM+AGL + + ++ I
Sbjct: 10 RKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL---ERITSGEIWIGG 65
Query: 413 FNVSYKPQKISPK-------FQS-------TVRH-----LLHQKIR--DSYTHPQFVSDV 451
V+ ++ P FQ+ +VR L KIR + V++
Sbjct: 66 RVVN----ELEPADRDIAMVFQNYALYPHMSVRENMAYGL---KIRGMPKAEIEERVAEA 118
Query: 452 MKPLLIEQLMDQEVVNLSGGELQRVALCLCLG-----KPADIYLIDEPSAYLDSEQRIVA 506
+ L +E L+D++ LSGG+ QRVA +G +PA ++L DEP + LD++ R V
Sbjct: 119 ARILELEPLLDRKPRELSGGQRQRVA----MGRAIVREPA-VFLFDEPLSNLDAKLR-VQ 172
Query: 507 AKV-IKRFILHA--KKTAFVVEHDFIMATYLADRVIV 540
++ I+R LH K T+ V HD + A LADRV+V
Sbjct: 173 MRLEIQR--LHRRLKTTSLYVTHDQVEAMTLADRVVV 207
|
Length = 356 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 5e-13
Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 32/208 (15%)
Query: 357 KTQGNFK-LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIP 411
K G+F L V + +++ +LG +G+GKTT +R++AGL +PDS D
Sbjct: 10 KRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT-- 67
Query: 412 EFNVSYKPQKISPKFQ--STVRHL-------LHQKIRDSYTHP------QFVSDVMKPLL 456
+V + + + FQ + RH+ +++ P V +++K +
Sbjct: 68 --DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ 125
Query: 457 IEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI-- 514
++ L D+ LSGG+ QRVAL L + L+DEP LD++ R K ++R++
Sbjct: 126 LDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR----KELRRWLRR 181
Query: 515 LHAKK--TAFVVEHDFIMATYLADRVIV 540
LH + T V HD A +ADRV+V
Sbjct: 182 LHDELHVTTVFVTHDQEEALEVADRVVV 209
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 6e-13
Identities = 62/194 (31%), Positives = 84/194 (43%), Gaps = 13/194 (6%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
PG+VLG+VG +G GKST L LAG+L P+ G L ++ SE + R L
Sbjct: 27 YPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER---RRL 83
Query: 161 EDNLKAIIKPQYVDHIPKAVQ--GNVGQVLDQKDERDMKADLCTDLD-LNQV-IDRNVGD 216
+ D + V N+G+ L R T D L +V ID D
Sbjct: 84 MRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPTRID 143
Query: 217 -----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVI 270
SGG QR IA V + DEP+ LDV + + ++R L+R VI
Sbjct: 144 DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVI 203
Query: 271 VVEHDLSVLDYLSD 284
+V HDL V L+
Sbjct: 204 IVTHDLGVARLLAQ 217
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 7e-13
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--------FNNPPDWQEILTYFRGSELQ 153
PG+V GL+G NG GK+T L++LAG L+P+ G P + + L + S
Sbjct: 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDS--- 86
Query: 154 NYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRN 213
L D L A +Y + G G L + E +L L + +++DR
Sbjct: 87 ----TGLYDRLTARENLEYF----AGLYGLKGDELTARLE-----ELADRLGMEELLDRR 133
Query: 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
VG S G Q+ AIA V + + + DEP++ LDV + +R L ++
Sbjct: 134 VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFST 193
Query: 274 HDLSVLDYLSDFI 286
H + ++ L D +
Sbjct: 194 HIMQEVERLCDRV 206
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 7e-13
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 388 TTFIRMLAGLLKPDS----------VEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQK 437
+T ++++ GLL+P S S ++ + Q + TVR L
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 438 IRDSYTHPQFVSDVMKPLLIEQLMDQEVVN-LSGGELQRVALCLCLGKPADIYLIDEPSA 496
+RD + ++ + + +D+E V LSGG+ QRVA+ L K + L+DEP+A
Sbjct: 61 LRDKEA-DARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 1e-12
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 45/203 (22%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNNPPDWQEI-------LTYFRGSE 151
G+ + +VG +G GKST L +L G KP G N +++ L R +
Sbjct: 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING----KDLTKLSEKELAKLRRKK 84
Query: 152 L----QNYFTRILEDNLKA---IIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL 204
+ QN+ L +L + P + + +L L
Sbjct: 85 IGFVFQNF---NLLPDLTVLENVELPLLIAGKSA------------GRRKRAAEELLEVL 129
Query: 205 DL-NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263
L ++++ + +LSGG+ QR AIA + N +I + DEP+ LD K A+ V LL
Sbjct: 130 GLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS----KTAKEVLELL 185
Query: 264 R-----PNSYVIVVEHDLSVLDY 281
R +I+V HD + Y
Sbjct: 186 RELNKERGKTIIMVTHDPELAKY 208
|
Length = 226 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 32/195 (16%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNN-------PPDWQEILTYFRGSE 151
PG+ + +VG +G GKST LK+L G KP GR + + + Y
Sbjct: 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYV---- 552
Query: 152 LQNY--FTRILEDNLKAIIKPQYVD-HIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQ 208
LQ+ F+ + +N+ A+ P+ D I +A Q + + + M D
Sbjct: 553 LQDPFLFSGSIRENI-ALGNPEATDEEIIEAAQ--LAGAHEFIENLPMGYDT-------P 602
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY 268
V + LSGG+ QR A+A + +I + DE +S LD A ++++LL+
Sbjct: 603 VGEGGAN-LSGGQRQRLALARALLSKPKILLLDEATSALDP---ETEAIILQNLLQILQG 658
Query: 269 --VIVVEHDLSVLDY 281
VI++ H LS +
Sbjct: 659 RTVIIIAHRLSTIRS 673
|
Length = 709 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 1e-12
Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 53/182 (29%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKP 419
L V GE + +LGENG GK+T +++L+GL KPDS V+ +V
Sbjct: 21 LSVRRGE-----VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF--------- 66
Query: 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALC 479
++ R I ++ Q LS GE Q V +
Sbjct: 67 --------ASPRDARRAGIA----------------MVYQ--------LSVGERQMVEIA 94
Query: 480 LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFV-VEHDFIMATYLADRV 538
L + A + ++DEP+A L + KVI+R L A+ A + + H +ADRV
Sbjct: 95 RALARNARLLILDEPTAALTPAEVERLFKVIRR--LRAQGVAVIFISHRLDEVFEIADRV 152
Query: 539 IV 540
V
Sbjct: 153 TV 154
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 98/404 (24%), Positives = 161/404 (39%), Gaps = 83/404 (20%)
Query: 191 KDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK 250
K+ DL + L+ I DLSGGE QR +A + +++ DEP+ LD +
Sbjct: 143 KEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQ 202
Query: 251 QRLKAAQVVRSLLRP-----NSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSV 305
A++V + L +++ H V++ LSD L + G P V
Sbjct: 203 ----TAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWL--ENGEIKEEGTPDEV 256
Query: 306 REGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEI---ETYARYKYPT---MVKTQ 359
+ +F+ G E E E E I ++ +VK
Sbjct: 257 ---VAVFMEGVSEVEK-------------ECEVEVGEPIIKVRNVSKRYISVDRGVVKAV 300
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP 419
N L+V EGE I ++G +G GKTT +++AG+L+P S E +V + + V
Sbjct: 301 DNVSLEVKEGE-----IFGIVGTSGAGKTTLSKIIAGVLEPTSGE-VNVRVGDEWVDMTK 354
Query: 420 QKISPKFQSTVRHL--LHQKIRDSYTHPQFVSDVMKPLLIE------------------- 458
+ ++ R++ LHQ+ D Y H + ++ + + +E
Sbjct: 355 PGPDGRGRAK-RYIGILHQEY-DLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGF 412
Query: 459 ------QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512
+++D+ LS GE RVAL L K I ++DEP+ +D ++
Sbjct: 413 DEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHS--- 469
Query: 513 FILHAKK----TAFVVEHDFIMATYLADRV-------IVYEGQP 545
IL A++ T +V HD + DR IV G P
Sbjct: 470 -ILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-12
Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 50/212 (23%)
Query: 77 KDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNN 136
K++ K + N L+ + G+++ L+G +G GKST L+ +AG +P+ G
Sbjct: 4 KNVSKRYGQKTVLNDVSLN---IEA-GEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI-- 57
Query: 137 PPDWQEILTYFRGSELQ--NYFTRILEDNLKAII-KPQYVDHIPKAVQGNVGQVLDQKDE 193
G +L L + + H V N+ L
Sbjct: 58 ---------LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH--LTVLENIALGL----- 101
Query: 194 RDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRL 253
SGG+ QR A+A + ++ + DEP+S LD R
Sbjct: 102 ------------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRR 137
Query: 254 KAAQVVRSLLRPNSY-VIVVEHDLSVLDYLSD 284
+ +++SL V++V HDL L+D
Sbjct: 138 EVRALLKSLQAQLGITVVLVTHDLDEAARLAD 169
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
G + ++G NG GKST L +++ LK + G EI G EL + ++ L
Sbjct: 26 KGGITSIIGPNGAGKSTLLSMMSRLLKKDSG---------EI--TIDGLELTSTPSKELA 74
Query: 162 DNLKAIIKPQYVDHIPKAVQGNVG--------QVLDQKDERDMKADLCTDLDLNQVIDRN 213
L +I+K + + V+ VG L ++D R + + L L + DR
Sbjct: 75 KKL-SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI-EYLHLEDLSDRY 132
Query: 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVV 272
+ +LSGG+ QR IA+V Q+ + + DEP + LD+K ++ +++R L ++VV
Sbjct: 133 LDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVV 192
Query: 273 EHDLSVLDYLSDFI 286
HD++ SD I
Sbjct: 193 LHDINFASCYSDHI 206
|
Length = 252 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 61/205 (29%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE---------DSD 407
K G+F L + + G +G+GKTT IR++AGL +PD E DS
Sbjct: 7 KRLGDFSLDADF-TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSR 65
Query: 408 VEIPEFNVSYKPQKISPKFQS-------TVRHLL---HQKIRDSYTHPQFVSDVMKPLLI 457
I + + ++I FQ +VR L ++ R S F V++ L I
Sbjct: 66 KGI---FLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFER-VIELLGI 121
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
L+ + LSGGE QRVA+ L + L+DEP A LD ++ ++R
Sbjct: 122 GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181
Query: 518 KKTAFVVEHDFIMATYLADRVIVYE 542
V H LADRV+V E
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLE 206
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 50/194 (25%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
+ G+ LGLVG +G GKST +++ G +P G EI F G ++ T++
Sbjct: 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG---------EI--LFEGKDI----TKLS 81
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220
++ + + ++L++ + + + R +LSGG
Sbjct: 82 KEERRERVL----------------ELLEKVGLPE------------EFLYRYPHELSGG 113
Query: 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS----YVIVVEHDL 276
+ QR IA N ++ + DEP S LDV + AQ++ L + + HDL
Sbjct: 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQ---AQILNLLKDLQEELGLTYLFISHDL 170
Query: 277 SVLDYLSDFICCLY 290
SV+ Y+SD I +Y
Sbjct: 171 SVVRYISDRIAVMY 184
|
Length = 268 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 37/210 (17%)
Query: 363 KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKI 422
L++ EG+F + ++G NG GK+T + +AG LKP S + + I +V+ K
Sbjct: 26 SLEIAEGDF-----VTVIGSNGAGKSTLLNAIAGDLKPTSGQ---ILIDGVDVTKKSVAK 77
Query: 423 SPKFQSTV--------------------------RHLLHQKIRDSYTHPQFVSDVMK-PL 455
+ V + L + + F + + L
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS-SFRERLARLGL 136
Query: 456 LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515
+E + + LSGG+ Q ++L + P I L+DE +A LD + ++ + +
Sbjct: 137 GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE 196
Query: 516 HAKKTAFVVEHDFIMATYLADRVIV-YEGQ 544
K T +V H+ A +R+I+ + G+
Sbjct: 197 EHKLTTLMVTHNMEDALDYGNRLIMLHSGK 226
|
Length = 263 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 25/191 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR-FNNPPDWQEILTYFRGSELQNYFTRI 159
G+++ ++G +G GKST L+ L G + P G N +T +G EL+ I
Sbjct: 28 NQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQ----ITKLKGKELRKLRRDI 83
Query: 160 --------LEDNLKAI--IKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQV 209
L L + + + + + G K+++ D + +
Sbjct: 84 GMIFQQFNLVPRLSVLENVLLGRLGYTST-WRSLFGLF--SKEDKAQALDALERVGILDK 140
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN--- 266
+ LSGG+ QR AIA VQ +I + DEP + LD + A +V+ L N
Sbjct: 141 AYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPES---AKKVMDILKDINQED 197
Query: 267 -SYVIVVEHDL 276
VIV H +
Sbjct: 198 GITVIVNLHQV 208
|
Length = 258 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 34/206 (16%)
Query: 84 THRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNNPPDWQ 141
+ R GP + ++ R G++L LVG NG GKST L +AG L P G +F P
Sbjct: 9 STRLGPLSAEV------RAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQP--- 58
Query: 142 EILTYFRGSELQNYFTRILEDNLKAIIKP--QYVD-HIP-KAVQGNVGQVLDQKDERDMK 197
L + +EL + + + P QY+ H P K V L+
Sbjct: 59 --LEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALN-------- 108
Query: 198 ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQ-------NAEIYMFDEPSSYLDVK 250
++ L L+ + R+V LSGGE QR +A V +Q ++ + DEP + LDV
Sbjct: 109 -EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVA 167
Query: 251 QRLKAAQVVRSLLRPNSYVIVVEHDL 276
Q+ +++ L + V++ HDL
Sbjct: 168 QQAALDRLLSELCQQGIAVVMSSHDL 193
|
Length = 248 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 43/241 (17%)
Query: 325 RDESLTFRVAETPQESAEEIETYARYKYPTMVKTQG-NFKLKVVEGEFTDSQIIVMLGEN 383
+ S ++RV +++ + KY + +G +F ++ +I+ +G N
Sbjct: 4 SNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIE-------KGEIVGFIGPN 56
Query: 384 GTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQK------ 437
G GKTT +++L+GLL+P S +V + P K KF + + QK
Sbjct: 57 GAGKTTTLKILSGLLQPTS---GEVRV----AGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109
Query: 438 --IRDSYTHPQFVSDVMKP------------LLIEQLMDQEVVNLSGGELQRVALCLCLG 483
+ DS+ + D+ L +E+L+D V LS G+ R + L
Sbjct: 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALL 169
Query: 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK----TAFVVEHDFIMATYLADRVI 539
+I +DEP+ LD +VA + I+ F+ + T + H LA RV+
Sbjct: 170 HEPEILFLDEPTIGLD----VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL 225
Query: 540 V 540
V
Sbjct: 226 V 226
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 3e-12
Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 44/230 (19%)
Query: 352 YPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSD 407
YP + N L + GEF + ++G +G GK+T +R + L++P S +E +D
Sbjct: 11 YPNGKQALKNINLNINPGEF-----VAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTD 65
Query: 408 VEIPEFNVSYKP-----QKISPKFQ--------STVRHLLH---------QKIRDSYTHP 445
+ + K ++I FQ + + ++LH + + ++
Sbjct: 66 IT----KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE 121
Query: 446 QFVS--DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503
++ + + Q LSGG+ QRVA+ L + D+ L DEP A LD +
Sbjct: 122 DKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTS 181
Query: 504 IVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRV-------IVYEGQPS 546
+KR T + H +A ADR+ IV++G PS
Sbjct: 182 KQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 17/186 (9%)
Query: 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP---QKISPKFQ 427
+I+ +LG +G GK+T + ++AG P S E + I + + P + +S FQ
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE---ILINGVDHTASPPAERPVSMLFQ 78
Query: 428 ST--VRHL---------LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRV 476
HL L ++ + + V + + + + LSGG+ QRV
Sbjct: 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV 138
Query: 477 ALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLAD 536
AL CL + I L+DEP + LD R ++ + K T +V H A +AD
Sbjct: 139 ALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIAD 198
Query: 537 RVIVYE 542
RV+ +
Sbjct: 199 RVVFLD 204
|
Length = 231 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 50/199 (25%), Positives = 93/199 (46%), Gaps = 18/199 (9%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPD---WQEILTYFRGSELQNY 155
PG++ L+G NG GK+T + ++ GK +P G F+ D E G +
Sbjct: 29 DPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQ 88
Query: 156 FTRILE-----DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI 210
+ E +NL+ + K+V ++ L ++ R + L T + L
Sbjct: 89 KPTVFENLTVRENLELALN------RDKSVFASLFARLRAEERRRIDELLAT-IGLGDER 141
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
DR LS G+ Q I ++ Q+ ++ + DEP + + + K A++++SL +S ++
Sbjct: 142 DRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHS-IL 200
Query: 271 VVEHDLSVLDYLSDFICCL 289
VVEHD+ + ++D + L
Sbjct: 201 VVEHDMGFVREIADKVTVL 219
|
Length = 249 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 4e-12
Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 25/208 (12%)
Query: 81 KDTTHRYGPNTFKLHRLPVP-RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPD 139
++ + Y L + PG+ + +VG +G GKST +K+L P G
Sbjct: 332 ENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI----- 386
Query: 140 WQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDM--- 196
G ++++ L + I+ Q ++ N+ + ++
Sbjct: 387 ------LIDGIDIRDISLDSLRKRI-GIV-SQDPLLFSGTIRENIALGRPDATDEEIEEA 438
Query: 197 --KADLCTDL-DLNQVIDRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV 249
A+ + +L D VG+ LSGG+ QR AIA ++N I + DE +S LD
Sbjct: 439 LKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498
Query: 250 KQRLKAAQVVRSLLRPNSYVIVVEHDLS 277
+ ++ LL+ +++ H LS
Sbjct: 499 ETEALIQDALKKLLK-GRTTLIIAHRLS 525
|
Length = 567 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-12
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 49/212 (23%)
Query: 81 KDTTHRYGPNTFK-LHRLPVP-RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP 138
+ + Y + L L + + G+ + L+G +G GKST L++L G LKP G
Sbjct: 4 NNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG------ 57
Query: 139 DWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA 198
EI G + + E L ++I VL+Q+
Sbjct: 58 ---EIT--LDGVPVSDL-----EKALSSLIS-----------------VLNQR------P 84
Query: 199 DLCTDLDLNQVIDRNVGD-LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQ 257
L + + N+G SGGE QR A+A + +Q+A I + DEP+ LD +
Sbjct: 85 YL-----FDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 258 VVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289
++ +L+ + +I + H L+ ++++ D I L
Sbjct: 140 LIFEVLK-DKTLIWITHHLTGIEHM-DKILFL 169
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 5e-12
Identities = 57/213 (26%), Positives = 87/213 (40%), Gaps = 38/213 (17%)
Query: 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDV 408
R+ Y G L + GE ++ ++G NG+GK+T +L GL +P S E
Sbjct: 329 RFAYQDNAFHVGPINLTIKRGE-----LVFLIGGNGSGKSTLAMLLTGLYQPQSGE---- 379
Query: 409 EIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMK--PLLIEQ------- 459
+ + +S + R L D + Q + K P LIE+
Sbjct: 380 ------ILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLEL 433
Query: 460 -----LMDQEVVN--LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512
L D N LS G+ +R+AL L L + DI ++DE +A D R +V+
Sbjct: 434 AHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLP 493
Query: 513 FILHAKKTAFVVEHD---FIMATYLADRVIVYE 542
+ KT F + HD FI ADR++
Sbjct: 494 LLKEQGKTIFAISHDDHYFIH----ADRLLEMR 522
|
Length = 546 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 5e-12
Identities = 60/226 (26%), Positives = 89/226 (39%), Gaps = 39/226 (17%)
Query: 357 KTQGNFK--LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPE 412
KT N K LK V + + ++G +G GK+T +R L GL++P S V +I +
Sbjct: 8 KTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINK 67
Query: 413 FNVSYKPQ---KISPKFQ--------STVRHLLHQKIRDSYTHP-----QFVSDVMKPLL 456
Q +I FQ S + ++L ++ K
Sbjct: 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRL--GRRSTWRSLFGLFPKEEKQRA 125
Query: 457 IEQLMD--------QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE-QRIVAA 507
+ L Q LSGG+ QRVA+ L + + L DEP A LD R V
Sbjct: 126 LAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 508 KVIKRFILHAKKTAFVVEHDFIMATYLADRV-------IVYEGQPS 546
++KR T V H +A ADR+ IV++G P+
Sbjct: 186 -LLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 6e-12
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 18/180 (10%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
R G+ + + G +G GKST LKI+A + P G F G ++
Sbjct: 27 RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL-----------LFEGEDVSTLKPEAY 75
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNV---GQVLDQKDERDMKADLCTDLDLNQVI-DRNVGD 216
+ Q V+ N+ Q+ +++ +R DL L I +N+ +
Sbjct: 76 RQQVSYCA--QTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITE 133
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV-VEHD 275
LSGGE QR A+ +I + DE +S LD + +++ +R + ++ + HD
Sbjct: 134 LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHD 193
|
Length = 223 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 6e-12
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS 267
+ + + LSGGELQR +A +++ DEPS+ L + + +V++ L+ +
Sbjct: 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN 140
Query: 268 YVIVVEHDLSVLDYLSDFICCLYGKPGAYG 297
VI++EH+L VL +D+I G G
Sbjct: 141 TVILIEHNLDVLSS-ADWIIDFGPGSGKSG 169
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 7e-12
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 35/213 (16%)
Query: 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VE 404
RY V + L + EGEF +V++G +G+GKTT ++M+ L++P S ++
Sbjct: 10 RYGNKKAVD---DVNLTIEEGEF-----LVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 405 DSDV-EIPEF----NVSYKPQKIS--PKFQ-----STVRHLL---HQKIRDSYTHPQFVS 449
D+ ++ + Y Q+I P +TV LL ++I+
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR------AD 115
Query: 450 DVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAA 507
+++ + ++ + D+ LSGG+ QRV + L I L+DEP LD R
Sbjct: 116 ELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQ 175
Query: 508 KVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
+ IK KT V HD A LADR+ V
Sbjct: 176 EEIKELQKELGKTIVFVTHDIDEALKLADRIAV 208
|
Length = 309 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 8e-12
Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 32/190 (16%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNNPPDWQEILTYFRGSELQNYFTR 158
R G++L LVG NG GKST L +AG + G +F P L + +EL +
Sbjct: 23 RAGEILHLVGPNGAGKSTLLARMAG-MTSGSGSIQFAGQP-----LEAWSATELARHRAY 76
Query: 159 ILEDNLKAIIKP--QYVD-HIP-KAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV 214
+ + P Y+ H P K + V L L+ + R+
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDV-------------AGALALDDKLGRST 123
Query: 215 GDLSGGELQRFAIAVVAVQ-------NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS 267
LSGGE QR +A V +Q ++ + DEP + LDV Q+ +++ +L +
Sbjct: 124 NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL 183
Query: 268 YVIVVEHDLS 277
+++ HDL+
Sbjct: 184 AIVMSSHDLN 193
|
Length = 248 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 8e-12
Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 32/202 (15%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
+ L + EGEF +V +G +G GK+T +RM+AGL + + D+ I E ++ P
Sbjct: 21 DINLDIHEGEF-----VVFVGPSGCGKSTLLRMIAGL---EDITSGDLFIGEKRMNDVPP 72
Query: 421 K---ISPKFQSTVRHLLHQKIRDSYTH------------PQFVSDVMKPLLIEQLMDQEV 465
+ FQS + H + ++ + Q V+ V + L + L+D++
Sbjct: 73 AERGVGMVFQSYALYP-HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP 131
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS----EQRIVAAKVIKRFILHAKKTA 521
LSGG+ QRVA+ L ++L+DEP + LD+ + RI +++ KR +T
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL----GRTM 187
Query: 522 FVVEHDFIMATYLADRVIVYEG 543
V HD + A LAD+++V +
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDA 209
|
Length = 369 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-12
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 23/239 (9%)
Query: 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE---DS 406
+KY + Q + L V + + ++G NG+GK+T +R++ GLL+ +S + D
Sbjct: 12 FKYK---EDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDG 68
Query: 407 DVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYT---------HPQFVSDVMKPLLI 457
D + E NV KI FQ+ + + D H + V + L +
Sbjct: 69 D-LLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALEL 127
Query: 458 EQLMD---QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI 514
+ D +E LSGG+ QRVA+ + I ++DE ++ LD E R+ K IK
Sbjct: 128 VGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIR 187
Query: 515 LHAKKTAFVVEHDFIMATYLADRVIVY-EGQPSVDCVANAPQSLLTGMNLFLSHLDITF 572
+ T + HD L+DRV+V GQ V+ + + G +L LDI F
Sbjct: 188 DDYQMTVISITHDLDEVA-LSDRVLVMKNGQ--VESTSTPRELFSRGNDLLQLGLDIPF 243
|
Length = 279 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 9e-12
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 51/216 (23%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYK 418
L V GE I+ ++G +G+GK+T +R++ GLL+PDS V +I + +
Sbjct: 18 GVDLDVRRGE-----ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAEL 72
Query: 419 ---PQKISPKFQS-------TVRH----LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQE 464
+++ FQS TV L + H + + ++ +++E+L E
Sbjct: 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLRE-------HTRLSEEEIREIVLEKL---E 122
Query: 465 VVNL-----------SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF 513
V L SGG +RVAL L ++ L DEP+A LD +A+ VI
Sbjct: 123 AVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDP----IASGVIDDL 178
Query: 514 ILHAKK----TAFVVEHDFIMATYLADRVIV-YEGQ 544
I KK T+ +V HD A +ADR+ V Y+G+
Sbjct: 179 IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGK 214
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 57/205 (27%), Positives = 83/205 (40%), Gaps = 33/205 (16%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
G+ + ++G +G GKST L+++AG KP G E+L G + I
Sbjct: 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG---------EVL--LDGRPVTGPGPDIG 75
Query: 161 ----EDNLKAIIKPQYVDHIP-KAVQGNVGQVLDQ----KDERDMKADLCTDL-DLNQVI 210
ED L +P V NV L+ K E +A +L L
Sbjct: 76 YVFQEDAL-----------LPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE 124
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPNSYV 269
D+ LSGG QR AIA ++ + DEP LD R + + L V
Sbjct: 125 DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTV 184
Query: 270 IVVEHDLSVLDYLSDFICCLYGKPG 294
++V HD+ YL+D + L +PG
Sbjct: 185 LLVTHDVDEAVYLADRVVVLSNRPG 209
|
Length = 248 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 39/227 (17%)
Query: 81 KDTTHRYGPN------TFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134
+ T YGP +F L+ PG+VLG+VG +G GK+T L L+ +L P+ G
Sbjct: 10 RGLTKLYGPRKGCRDVSFDLY------PGEVLGIVGESGSGKTTLLNALSARLAPDAG-- 61
Query: 135 NNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQ--YVDHIPK-----AVQ--GNVG 185
E+ R +L++ + + E + +++ + +V P+ V GN+G
Sbjct: 62 -------EVHYRMRDGQLRDLYA-LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIG 113
Query: 186 QVLDQKDERDMKADLCTDLD-LNQV-IDRN-VGDL----SGGELQRFAIAVVAVQNAEIY 238
+ L R T D L +V ID + DL SGG QR IA V + +
Sbjct: 114 ERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLV 173
Query: 239 MFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSD 284
DEP+ LDV + + ++R L+R V++V HDL+V L+
Sbjct: 174 FMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAH 220
|
Length = 258 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 51/203 (25%), Positives = 72/203 (35%), Gaps = 57/203 (28%)
Query: 91 TFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--NNPPDW-------- 140
+F++ R G+ +GL+G NG GKST L++LAG P+ G
Sbjct: 42 SFEVPR------GERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGF 95
Query: 141 QEILT-----YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERD 195
LT Y G L L + E D
Sbjct: 96 NPELTGRENIYLNGRLL----------GLS-------------------------RKEID 120
Query: 196 MKADLCTDL-DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLK 254
K D + +L ID V S G R A A+ +I + DE + D + K
Sbjct: 121 EKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEK 180
Query: 255 AAQVVRSLLRPNSYVIVVEHDLS 277
+ +R LL+ VI+V HD S
Sbjct: 181 CQRRLRELLKQGKTVILVSHDPS 203
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 1e-11
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 41/215 (19%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF---NNPPDW---------QEILTYFRG 149
V GLVG NG GKST L+G L+P G P D+ Q++ T F+
Sbjct: 26 LSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQD 85
Query: 150 SELQNYFTRILED---NLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDL 206
E Q ++T I D +L+ + P+ I + V + T +D
Sbjct: 86 PEQQIFYTDIDSDIAFSLRNLGVPE--AEITRRVD-----------------EALTLVDA 126
Query: 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
+ + LS G+ +R AIA V A + DEP++ LD R + ++R ++
Sbjct: 127 QHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 267 SYVIVVEHDLSVLDYLSDFICCL-------YGKPG 294
++VI+ HD+ ++ +SD + L +G PG
Sbjct: 187 NHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPG 221
|
Length = 271 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-11
Identities = 47/185 (25%), Positives = 72/185 (38%), Gaps = 38/185 (20%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI-- 159
G+ L L G NG GK+T L+++AG L P G I + +
Sbjct: 27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT---------IKLDGGDIDDPDVAEACHY 77
Query: 160 ------LEDNLKAIIKPQYVDHIPKAVQGNVG---QVLDQKDERDMKADLCTDLDLNQVI 210
++ L V N+ L +E D+ A L + L +
Sbjct: 78 LGHRNAMKPAL--------------TVAENLEFWAAFLGG-EELDIAAALE-AVGLAPLA 121
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK-QRLKAAQVVRSLLRPNSYV 269
G LS G+ +R A+A + V N I++ DEP++ LD L A ++R+ L V
Sbjct: 122 HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE-LIRAHLAQGGIV 180
Query: 270 IVVEH 274
I H
Sbjct: 181 IAATH 185
|
Length = 207 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 2e-11
Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 51/191 (26%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
+PG+ + +VG +G GKST LK+ L R +P EIL G +L++ L
Sbjct: 26 KPGEKVAIVGPSGSGKSTLLKL--------LLRLYDPTS-GEIL--IDGVDLRDL---DL 71
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220
E K I YV P G + R+ N+ LSGG
Sbjct: 72 ESLRKNIA---YVPQDPFLFSGTI---------RE-----------------NI--LSGG 100
Query: 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL--LRPNSYVIVVEHDLSV 278
+ QR AIA +++ I + DE +S LD + A ++ +L L VIV+ H LS
Sbjct: 101 QRQRIAIARALLRDPPILILDEATSALDPET---EALILEALRALAKGKTVIVIAHRLST 157
Query: 279 LDYLSDFICCL 289
+ +D I L
Sbjct: 158 IR-DADRIIVL 167
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-11
Identities = 60/229 (26%), Positives = 96/229 (41%), Gaps = 56/229 (24%)
Query: 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD--SVED 405
+ YP N L + GE + ++G G+GK+T +++L GL +P SV
Sbjct: 470 SFAYPGQETPALDNVSLTIRPGEK-----VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524
Query: 406 SDVEI----PEF---NVSYKPQKISPKFQSTVRHLLHQKIRDSYT-HPQFVSDVMKPLLI 457
V+I P N+ Y PQ L + +RD+ + D ++
Sbjct: 525 DGVDIRQIDPADLRRNIGYVPQDPR---------LFYGTLRDNIALGAPYADDEE---IL 572
Query: 458 EQL---------------MDQEV----VNLSGGELQRVALC-LCLGKPADIYLIDEPSAY 497
+D ++ +LSGG+ Q VAL L P I L+DEP++
Sbjct: 573 RAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP-ILLLDEPTSA 631
Query: 498 LD--SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544
+D SE+R +KR++ A KT +V H + L DR+IV +
Sbjct: 632 MDNRSEERFK--DRLKRWL--AGKTLVLVTHRTSLLD-LVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 31/189 (16%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKPQKISPKFQ--S 428
Q++ +LG +G+GKTT +R++AGL S +DV + + +K+ FQ +
Sbjct: 29 QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS----RLHARDRKVGFVFQHYA 84
Query: 429 TVRHL------------LHQKIR-DSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQR 475
RH+ L ++ R ++ V+ +++ + + L D+ LSGG+ QR
Sbjct: 85 LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQR 144
Query: 476 VALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI--LHA--KKTAFVVEHDFIMA 531
VAL L I L+DEP LD++ R K ++R++ LH K T+ V HD A
Sbjct: 145 VALARALAVEPQILLLDEPFGALDAQVR----KELRRWLRQLHEELKFTSVFVTHDQEEA 200
Query: 532 TYLADRVIV 540
+ADRV+V
Sbjct: 201 MEVADRVVV 209
|
Length = 353 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-11
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 18/174 (10%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPDWQEILTYFRGSELQNYFTRIL 160
G+ L + G NG GK+T L+ILAG P GR N P + R S +
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-----RDSIARGLLYLGH 80
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220
+K + A + QV + + LN DR V LS G
Sbjct: 81 APGIKTTLSVLENLRFWHADHSD-EQVEEALA----------RVGLNGFEDRPVAQLSAG 129
Query: 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEH 274
+ +R A+A + + +++ DEP++ LD + A+ + V++ H
Sbjct: 130 QQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-11
Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 17/186 (9%)
Query: 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP---QKISPKFQ 427
F +I ++G +G+GK+T + ++AG P S V I +V+ P + +S FQ
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQS---GRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 428 ST--VRHL---------LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRV 476
HL L ++ + Q + + + + L + LSGGE QRV
Sbjct: 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRV 137
Query: 477 ALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLAD 536
AL L + + L+DEP A LD R ++ K T +V H A LA
Sbjct: 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQ 197
Query: 537 RVIVYE 542
RV+ +
Sbjct: 198 RVVFLD 203
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 3e-11
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 40/211 (18%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV------EIPEF 413
L+V GE I+ +LG NG GKTT ++ + GL++P S + D+ E
Sbjct: 24 LEVERGE-----IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78
Query: 414 NVSYKPQK--ISPKFQSTVRH--LLHQKIRDSYTHPQFVSDVMK---PLLIEQLMDQEVV 466
++Y P+ I P+ TV LL R + + + P L E+ +Q
Sbjct: 79 GIAYVPEGRRIFPRL--TVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERR-NQRAG 135
Query: 467 NLSGGELQRVALCLCL-GKPADIYLIDEPSAYLDSEQRIVAA---KVIKRFILHAKKTAF 522
LSGGE Q +A+ L +P + L+DEPS L + + IK T
Sbjct: 136 TLSGGEQQMLAIARALMSRP-KLLLLDEPSEGL---APKIVEEIFEAIKELRKEGGMTIL 191
Query: 523 VVEHDFIMATYLADRV-------IVYEGQPS 546
+VE + A +ADR IV G +
Sbjct: 192 LVEQNARFALEIADRGYVLENGRIVLSGTAA 222
|
Length = 237 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 3e-11
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 31/196 (15%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKP 419
L V +GE ++V++G +G+GK+T +R L GL +PDS V+ DV + ++
Sbjct: 23 LSVEKGE-----VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK-DILKLR 76
Query: 420 QKISPKFQSTVRHLL-HQKIRDSYTHPQFVSDVMKP---------LL----IEQLMDQEV 465
+K+ FQ +L H + ++ T + LL + D
Sbjct: 77 RKVGMVFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP 134
Query: 466 VNLSGGELQRVAL--CLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFV 523
LSGG+ QRVA+ L + P + L DEP++ LD E V+K + T +
Sbjct: 135 AQLSGGQQQRVAIARALAM-DP-KVMLFDEPTSALDPELVGEVLDVMKD-LAEEGMTMII 191
Query: 524 VEHDFIMATYLADRVI 539
V H+ A +ADRVI
Sbjct: 192 VTHEMGFAREVADRVI 207
|
Length = 240 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 3e-11
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 42/206 (20%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKP 419
L V +GE ++V++G +G+GK+T +R + L +PDS ++ + + N++
Sbjct: 21 LTVKKGE-----VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75
Query: 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVV------------- 466
QK+ FQ + + H + ++ + + M +
Sbjct: 76 QKVGMVFQQF----------NLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGL 125
Query: 467 ---------NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
LSGG+ QRVA+ L + L DEP++ LD E V+K +
Sbjct: 126 ADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKD-LAEE 184
Query: 518 KKTAFVVEHDFIMATYLADRVIVYEG 543
T VV H+ A +ADRVI +
Sbjct: 185 GMTMVVVTHEMGFAREVADRVIFMDD 210
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 59/204 (28%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 357 KTQGNFK------LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDS 406
K G+FK KV EGE + LG NG GKTT IRML LL+P S V
Sbjct: 1 KVYGDFKAVDGVNFKVREGE-----VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGY 55
Query: 407 DV-----EIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQL- 460
DV ++ ++ PQ S T R L + + Y P+ ++ L+E
Sbjct: 56 DVVREPRKVRR-SIGIVPQYASVDEDLTGRENL-EMMGRLYGLPKDEAEERAEELLELFE 113
Query: 461 ----MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516
D+ V SGG +R+ + L D+ +DEP+ LD R I+
Sbjct: 114 LGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK-E 172
Query: 517 AKKTAFVVEHDFIMATYLADRVIV 540
T + H A L DR+ +
Sbjct: 173 EGVTILLTTHYMEEADKLCDRIAI 196
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-11
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 34/208 (16%)
Query: 81 KDTTHRYGPNTFKLHRLPVPRP-GQVLGLVGTNGIGKSTALKILAGKLKPNLGRF----- 134
++ T R+G N L L + G+ + L+G +G GK+T L+++AG +P GR
Sbjct: 4 ENVTKRFG-NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR 62
Query: 135 ---NNPPDWQEILTYFRGSELQNY--FTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVL 188
+ PP ++I F QNY + + + DN+ +K + +PK +
Sbjct: 63 DVTDLPPKDRDIAMVF-----QNYALYPHMTVYDNIAFGLK---LRKVPKDE-------I 107
Query: 189 DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
D++ A+L L + ++DR LSGG+ QR A+ V+ ++++ DEP S LD
Sbjct: 108 DERVRE--VAEL---LQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
Query: 249 VKQRLKA-AQVVRSLLRPNSYVIVVEHD 275
K R++ A++ R R + I V HD
Sbjct: 163 AKLRVQMRAELKRLQQRLGTTTIYVTHD 190
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 28/201 (13%)
Query: 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP-----QKISP 424
+ I ++G NG GK+T + M++ LLK DS E + I ++ P +K+S
Sbjct: 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE---ITIDGLELTSTPSKELAKKLSI 79
Query: 425 KFQS-------TVRHLL------HQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGG 471
Q TVR L+ + + R + + +++ ++ L +E L D+ + LSGG
Sbjct: 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGG 139
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA 531
+ QR + + L + D L+DEP LD + + K+++R KT VV HD A
Sbjct: 140 QRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFA 199
Query: 532 TYLADRVI-------VYEGQP 545
+ +D ++ V +G P
Sbjct: 200 SCYSDHIVALKNGKVVKQGSP 220
|
Length = 252 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 26/204 (12%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP---- 419
+ V EF + ++G+ G+GK+T I+ + LLKP + V + + +++K
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT---GTVTVDDITITHKTKDKY 79
Query: 420 -----QKISPKFQSTVRHLLHQKI-RDSYTHPQ-F------VSDVMKPLLIE-----QLM 461
++I FQ L + R+ P+ F V + LL++ +M
Sbjct: 80 IRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVM 139
Query: 462 DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521
Q +SGG+++++A+ L DI ++DEP+A LD + + +++K KT
Sbjct: 140 SQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTI 199
Query: 522 FVVEHDFIMATYLADRVIVY-EGQ 544
+V HD AD VIV EG
Sbjct: 200 ILVSHDMNEVARYADEVIVMKEGS 223
|
Length = 286 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 63/211 (29%), Positives = 92/211 (43%), Gaps = 35/211 (16%)
Query: 84 THRYGP------NTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP 137
T RY ++ L PG+ + LVG +G GKST + ++ RF P
Sbjct: 337 TFRYPGRDRPALDSISLV----IEPGETVALVGRSGSGKSTLVNLIP--------RFYEP 384
Query: 138 PDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYV---DHIPKAVQ-GNVGQVLDQKDE 193
D +IL G +L +Y L + A++ V D I + G Q + E
Sbjct: 385 -DSGQIL--LDGHDLADYTLASLRRQV-ALVSQDVVLFNDTIANNIAYGRTEQADRAEIE 440
Query: 194 RDMKADLCTD------LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYL 247
R + A D L L+ I N LSGG+ QR AIA +++A I + DE +S L
Sbjct: 441 RALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSAL 500
Query: 248 DVK-QRLKAAQVVRSLLRPNSYVIVVEHDLS 277
D + +RL A + R L +V+ H LS
Sbjct: 501 DNESERLVQAALER--LMQGRTTLVIAHRLS 529
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-11
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 29/152 (19%)
Query: 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTV 430
+ + + G NG GKTT +R+LAGLL+PD+ E V ++ + I +S
Sbjct: 25 LNAGEALQITGPNGAGKTTLLRILAGLLRPDAGE----------VYWQGEPIQNVRESYH 74
Query: 431 RHLL---HQK-IRDSYT--------HP--QFVSDVMKPLLIEQ-----LMDQEVVNLSGG 471
+ LL HQ I+ T + + Q L D V LS G
Sbjct: 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAG 134
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503
+ +RVAL PA ++++DEP LD E
Sbjct: 135 QQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
|
Length = 209 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 27/212 (12%)
Query: 346 TYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405
TY K P + +F + G +T ++G NG+GK+T +++ GLL PD +
Sbjct: 14 TYPDSKKPAL--NDISFSIP--RGSWT-----ALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 406 SDVEIPEFNVSYKP-----QKISPKFQSTVRHLLHQKIRD---------SYTHPQF---V 448
S + + ++ K +K+ FQ+ + + D + P+ V
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAK 508
DV+ + + +D E NLSGG+ QRVA+ L I ++DE ++ LD + K
Sbjct: 125 RDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK 184
Query: 509 VIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
+I++ T + HD I +AD+V+V
Sbjct: 185 LIRKLKKKNNLTVISITHD-IDEANMADQVLV 215
|
Length = 282 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 6e-11
Identities = 59/241 (24%), Positives = 97/241 (40%), Gaps = 46/241 (19%)
Query: 70 IQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKP 129
I++ L K T + G + L V R G++L ++G +G GKST L+++ G L+P
Sbjct: 1 IELRGLTKSFGGRTVLK-GVD------LDVRR-GEILAIIGPSGSGKSTLLRLIVGLLRP 52
Query: 130 NLGR-FNNPPDWQEILTYFRGSELQNYFTRI--------LEDNLKAIIKPQYVDHIPKAV 180
+ G + D +EL R+ L D+L V
Sbjct: 53 DSGEVLIDGEDISG----LSEAELYRLRRRMGMLFQSGALFDSL--------------TV 94
Query: 181 QGNVGQVLDQKDERDMKADLCTDL--------DLNQVIDRNVGDLSGGELQRFAIAVVAV 232
NV L + + + ++ L D +LSGG +R A+A
Sbjct: 95 FENVAFPLREH--TRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALA 152
Query: 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291
+ E+ ++DEP++ LD ++RSL + I+V HDL ++D I LY
Sbjct: 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYD 212
Query: 292 K 292
Sbjct: 213 G 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 8e-11
Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 39/209 (18%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNY----- 155
PG++ ++G NG GK+T + ++ GK +P+ G F G++L
Sbjct: 26 DPGELRVIIGPNGAGKTTMMDVITGKTRPDEGS-----------VLFGGTDLTGLPEHQI 74
Query: 156 --------FT--RILE-----DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADL 200
F + E +NL+ + K+V ++ L +E+D ++
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLELALP------RDKSVFASLFFRLS-AEEKDRIEEV 127
Query: 201 CTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVR 260
+ L DR G LS G+ Q I ++ +Q+ ++ + DEP + + ++ K A++++
Sbjct: 128 LETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLK 187
Query: 261 SLLRPNSYVIVVEHDLSVLDYLSDFICCL 289
SL +S V+VVEHD+ + ++D + L
Sbjct: 188 SLAGKHS-VVVVEHDMEFVRSIADKVTVL 215
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 8e-11
Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 45/206 (21%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS 423
L V GE I+ +LG +G+GK+T +R++ GLL+PD E + I ++S
Sbjct: 29 LDVPRGE-----ILAILGGSGSGKSTLLRLILGLLRPDKGE---ILI--DGEDI--PQLS 76
Query: 424 PKFQSTVRH---LLHQ--------KIRDSYTHPQFVSDVMKPLLIEQL--MDQEVVNL-- 468
+ +R +L Q + ++ P + LI +L M E+V L
Sbjct: 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRG 136
Query: 469 ----------SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK 518
SGG +RVAL + ++ +DEP++ LD ++A VI I
Sbjct: 137 AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP----ISAGVIDELIRELN 192
Query: 519 K----TAFVVEHDFIMATYLADRVIV 540
T +V HD +ADRV V
Sbjct: 193 DALGLTVIMVTHDLDSLLTIADRVAV 218
|
Length = 263 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 8e-11
Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 33/216 (15%)
Query: 351 KYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDV 408
+Y K N L++ +GEF +V++G +G+GKTT ++M+ L++P S +
Sbjct: 9 RYGGGKKAVNNLNLEIAKGEF-----LVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGE 63
Query: 409 EIPEFNVSYKPQKISPKFQS--------------TVRHLLH---QKIRDSYTHPQFVSDV 451
+I E + +KI Q V LL +KIR+ ++
Sbjct: 64 DIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRER------ADEL 117
Query: 452 MK--PLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509
+ L + D+ LSGG+ QRV + L + L+DEP LD R +
Sbjct: 118 LALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEE 177
Query: 510 IKRFILHAKKTAFVVEHDFIMATYLADR-VIVYEGQ 544
KR KT V HD A LADR I+ G+
Sbjct: 178 FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGE 213
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 41/192 (21%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--------FNNPPDWQEILTYFRGSEL 152
+ G+ + L+G +G GK+T L+++AG +P+ G + PP+ + I F
Sbjct: 29 KKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF----- 83
Query: 153 QNY--FTRILEDNLKAIIKPQYVDHIPKAVQGNVG------QVLDQKDERDMKADLCTDL 204
Q+Y F P H+ V+ NV + L + + + + +
Sbjct: 84 QSYALF-------------P----HMT--VEENVAFGLKVRKKLKKAEIKARVEEALELV 124
Query: 205 DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
L DR LSGG+ QR A+A V ++ + DEP S LD K R + + ++ L R
Sbjct: 125 GLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 265 PNSY-VIVVEHD 275
+ V HD
Sbjct: 185 ELGITFVYVTHD 196
|
Length = 352 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 9e-11
Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 31/223 (13%)
Query: 81 KDTTHRYGPNTFKLHRLPVPRP-GQVLGLVGTNGIGKSTALKILAGKLKPNLGRF----- 134
+ T Y T L + + G+ + LVG +G GKST LK++ + P G
Sbjct: 4 INVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQ 63
Query: 135 --NNPPDWQEILTYFR---GSELQNY---FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQ 186
++ + Y R G Q++ R + +N+ + P+ ++ V
Sbjct: 64 DVSDLRGRA--IPYLRRKIGVVFQDFRLLPDRNVYENV--AFALEVTGVPPREIRKRVPA 119
Query: 187 VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
L+ L +L SGGE QR AIA V + I + DEP+
Sbjct: 120 ALELVGLSHKHRALPAEL-------------SGGEQQRVAIARAIVNSPTILIADEPTGN 166
Query: 247 LDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289
LD + +++ + + + V+V H ++D + L
Sbjct: 167 LDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIAL 209
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 1e-10
Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 56/246 (22%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKPQKISPKFQSTV 430
+++ +LG NG GK+T +R L+G L PDS + + + P +++
Sbjct: 29 EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLA------DWSPAELA-----RR 77
Query: 431 RHLLHQKIRDSYTHPQFVSDVMK----PLLIEQLMDQEVVN------------------L 468
R +L Q S + P V +V+ P + + D +V L
Sbjct: 78 RAVLPQHS--SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQL 135
Query: 469 SGGELQRVAL--CLC-LGKPAD---IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF 522
SGGE QRV L L L +P L+DEP++ LD + ++ ++
Sbjct: 136 SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVI 195
Query: 523 VVEHDFIMATYLADRVIV-YEGQPSVDCVAN-APQSLLTGMNL---FLSHLDITFRRDPT 577
VV HD +A ADR+++ ++G+ VA+ P +LT L + D+ + P
Sbjct: 196 VVLHDLNLAARYADRIVLLHQGR----LVADGTPAEVLTPETLRRVY--GADVLVQPHPE 249
Query: 578 NFRPRI 583
P +
Sbjct: 250 TGAPLV 255
|
Length = 258 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 32/221 (14%)
Query: 350 YKYPTMVK-TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDS 406
++YP + V EGE+ + ++G NG+GK+T ++L GLL P++ +
Sbjct: 13 FRYPDAATYALKDVSFSVYEGEW-----VAIVGHNGSGKSTLAKLLNGLLLPEAGTITVG 67
Query: 407 DVEIPEFNVSYKPQKISPKFQ--------STVRH-----LLHQKI-RDSYTHPQFVSDVM 452
+ + E V +++ FQ +TV+ L + + R+ + V +
Sbjct: 68 GMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMV--ERVDQAL 125
Query: 453 KPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512
+ + +E +++E LSGG+ QRVA+ L DI ++DE ++ LD R + +++
Sbjct: 126 RQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185
Query: 513 FILHAKKTAFVVEHDFIMATYLADRVIVY-------EGQPS 546
T + HD A ADRVIV EG P
Sbjct: 186 LKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPE 225
|
Length = 279 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 66/242 (27%), Positives = 98/242 (40%), Gaps = 49/242 (20%)
Query: 77 KDLDKDTTHRYGPNTFK------LHRLPVPRP-GQVLGLVGTNGIGKSTALKILAGKLKP 129
DTT +F+ LH L + P G+V GL+G NG GKST LK+L P
Sbjct: 4 YTNHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP 63
Query: 130 NLGR--FNNPP--DWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV----- 180
+ G + P W F R K PQ +P A
Sbjct: 64 SEGEILLDAQPLESWSSKA-----------FAR------KVAYLPQ---QLPAAEGMTVR 103
Query: 181 ----------QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230
G +G+ D R+ + + + L + R V LSGGE QR IA++
Sbjct: 104 ELVAIGRYPWHGALGR-FGAAD-REKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAML 161
Query: 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY-VIVVEHDLSVLDYLSDFICCL 289
Q++ + DEP+S LD+ ++ +V L + VI V HD+++ D++ L
Sbjct: 162 VAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVAL 221
Query: 290 YG 291
G
Sbjct: 222 RG 223
|
Length = 265 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 33/208 (15%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDS----VEDSDVEIPEFN 414
LK + + +I ++G +G GK+T +R+L L PD ++ D+ + +
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHP---------QFVSDVMKPLLIEQLMDQEV 465
V +++ FQ I D+ + + + + ++ L + + EV
Sbjct: 76 VLELRRRVGMVFQKPN--PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEV 133
Query: 466 VN------LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK 519
+ LSGG+ QR+ L L ++ L+DEP++ LD ++ I+ I KK
Sbjct: 134 KDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP----ISTAKIEELIAELKK 189
Query: 520 --TAFVVEHDFIMATYLADRVIV-YEGQ 544
T +V H+ A +ADR G+
Sbjct: 190 EYTIVIVTHNMQQAARVADRTAFLLNGR 217
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 29/186 (15%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGR---FNNPPDWQEILTYFR---GSELQNYF 156
G+ + ++G NG GKST KIL G LKP G +E L R G QN
Sbjct: 35 GEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIS-KENLKEIRKKIGIIFQN-- 91
Query: 157 TRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQK--DERDMKA---DLCTDLDLNQVID 211
DN Q+ I V+ ++ L+ K + MK DL + + +D
Sbjct: 92 ----PDN-------QF---IGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD 137
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS-YVI 270
+ +LSGG+ QR AIA V N EI +FDE +S LD K + + +++ L + +I
Sbjct: 138 KEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLI 197
Query: 271 VVEHDL 276
+ HD+
Sbjct: 198 SITHDM 203
|
Length = 271 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 25/187 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPP--DWQEILTYFR--GSELQN 154
+ G+++ L+G +G GKST L+I+AG P+ GR N D + R G Q+
Sbjct: 26 KSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQH 85
Query: 155 Y---FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVID 211
Y + DN+ +K + ++ V ++L L L + D
Sbjct: 86 YALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELL----------RLV---QLEGLAD 132
Query: 212 RNVGDLSGGELQRFAIA-VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPNSYV 269
R LSGG+ QR A+A +AV+ ++ + DEP LD K R + + +R L R
Sbjct: 133 RYPAQLSGGQRQRVALARALAVE-PKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 270 IVVEHDL 276
+ V HD
Sbjct: 192 VFVTHDQ 198
|
Length = 345 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 27/201 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPD----------WQEILTYFRGS 150
R G ++GLVG NG GK+T L+ + G L P G D + + + + +
Sbjct: 27 REGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDT 86
Query: 151 ELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA--DLCTDLDLNQ 208
L F ++ +++ H + D E D A + Q
Sbjct: 87 SLSFEFD------VRQVVEMGRTPHRSR---------FDTWTETDRAAVERAMERTGVAQ 131
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY 268
DR V LSGGE QR +A Q + + DEP++ LD+ +++ ++VR L+
Sbjct: 132 FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKT 191
Query: 269 VIVVEHDLSVLDYLSDFICCL 289
+ HDL + D + L
Sbjct: 192 AVAAIHDLDLAARYCDELVLL 212
|
Length = 402 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-10
Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 117 STALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYV-DH 175
ST LK++ G L+P G + ++L + + Q
Sbjct: 1 STLLKLITGLLQPTSGT----------ILLDGEDGTGLSSRKLLRKRIGVV--FQDPQLF 48
Query: 176 IPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRN-VGDLSGGELQRFAIAVVAVQN 234
V+ N+ L K+ + + L +DR VG LSGG+ QR AIA ++
Sbjct: 49 PELTVRENLFFGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKK 108
Query: 235 AEIYMFDEPSS 245
++ + DEP++
Sbjct: 109 PKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 32/202 (15%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----------VEDSDVEI 410
+ L + +GE V++G +G+GK+T +RML L++P + ++ S VE+
Sbjct: 11 DADLAIAKGEI-----FVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVEL 65
Query: 411 PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYT------------HPQFVSDVMKPLLIE 458
E + +KI FQ H I + + + +++K + +E
Sbjct: 66 REV----RRKKIGMVFQQ-FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120
Query: 459 QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK 518
+ + LSGG QRV L L DI L+DE + LD R +K+ +
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 519 KTAFVVEHDFIMATYLADRVIV 540
KT + HD A + DR+++
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVI 202
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYKPQKIS--PKFQSTV 430
+I+ +LG NG GK+T +R++ GL+ PD ++ + + + Y PQK+ TV
Sbjct: 31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRN----GKLRIGYVPQKLYLDTTLPLTV 86
Query: 431 RH--LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488
L + P +K + L+D + LSGGE QRV L L +
Sbjct: 87 NRFLRLRPGTKKEDILP-----ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQL 141
Query: 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD--FIMA 531
++DEP+ +D ++ +I + +V HD +MA
Sbjct: 142 LVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMA 186
|
Length = 251 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 40/221 (18%)
Query: 355 MVKTQGNFK------LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS------ 402
+VK G+F+ +V GE I +LG NG GKTT I+ML LLKP S
Sbjct: 6 LVKKYGDFEAVRGVSFRVRRGE-----IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60
Query: 403 ----VEDSDVEIPEFNVSYKPQKISPKFQSTVRH--LLHQKIRDSYTHP-----QFVSDV 451
V + E+ + Q +S + T +H ++ Y P + + ++
Sbjct: 61 GHDVVREPR-EVRR-RIGIVFQDLSVDDELTGWENLYIHARL---YGVPGAERRERIDEL 115
Query: 452 MKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK 511
+ + + + D+ V SGG +R+ + L ++ +DEP+ LD + R + I+
Sbjct: 116 LDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175
Query: 512 RFILHAKKTAFVVEHDFIMATYLADRV-------IVYEGQP 545
+ T + H A L DRV I+ EG P
Sbjct: 176 KLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTP 216
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 379 MLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP---QKISPKFQS------- 428
+LG +G GKTT +R+LAG +PDS + + +V+ P + I+ FQS
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDS---GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 429 ----TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484
V L + V + ++ + +E+ D++ LSGG+ QRVAL L
Sbjct: 58 TVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF 117
Query: 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
I L+DEP + LD + R +K T V HD A ++DR+ +
Sbjct: 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI 173
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 2e-10
Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 46/213 (21%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV------EIPEF 413
L V EGE I+ +LG NG GKTT ++ + GLL P S + D+ E
Sbjct: 21 LTVPEGE-----IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA 75
Query: 414 NVSYKPQ--KISPKFQSTVRHLLH-----QKIRDSYTHPQFVSDVMKPLLIEQLMDQEVV 466
+ Y P+ +I P+ TV L ++ + V + + P L ++ Q
Sbjct: 76 GIGYVPEGRRIFPEL--TVEENLLLGAYARRRAKRKARLERVYE-LFPRL-KERRKQLAG 131
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI-----LHAKKTA 521
LSGGE Q +A+ L + L+DEPS L A K+++ L +
Sbjct: 132 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-------APKIVEEIFEAIRELRDEGVT 184
Query: 522 -FVVEHDFIMATYLADRV-------IVYEGQPS 546
+VE + A +ADR +V EG +
Sbjct: 185 ILLVEQNARFALEIADRAYVLERGRVVLEGTAA 217
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 2e-10
Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 36/207 (17%)
Query: 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNV 415
+ + +F LK + E +++ ++G G+GK++ + L G L+ + S V +P ++
Sbjct: 13 GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--LSGS-VSVPG-SI 68
Query: 416 SYKPQKISPKFQS-TVRH--LLHQKIRDSYTHPQFVSDVMKP--LL--IEQLMDQ---EV 465
+Y Q P Q+ T+R L + + V+K L +E L D E+
Sbjct: 69 AYVSQ--EPWIQNGTIRENILFGKPF-----DEERYEKVIKACALEPDLEILPDGDLTEI 121
Query: 466 ----VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA---K 518
+NLSGG+ QR++L + ADIYL+D+P + +D+ V + + IL
Sbjct: 122 GEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH---VGRHIFENCILGLLLNN 178
Query: 519 KTAFVVEH--DFIMATYLADRVIVYEG 543
KT +V H + AD+++V +
Sbjct: 179 KTRILVTHQLQLLPH---ADQIVVLDN 202
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 32/198 (16%)
Query: 97 LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPP----DWQEILTYFRGS 150
L VP+ V GL+G NG GKST LK++ G L+P G F+ P D +I +
Sbjct: 21 LTVPK-NSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79
Query: 151 ELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI 210
L T +NLK + +P + + +VL+ +DL
Sbjct: 80 PLYENLTA--RENLKVHTT---LLGLPDS---RIDEVLNI-------------VDLTNTG 118
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK--QRLKAAQVVRSLLRPNSY 268
+ S G QR IA+ + + ++ + DEP++ LD Q L+ +++RS
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR--ELIRSFPEQGIT 176
Query: 269 VIVVEHDLSVLDYLSDFI 286
VI+ H LS + L+D I
Sbjct: 177 VILSSHILSEVQQLADHI 194
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 114/506 (22%), Positives = 184/506 (36%), Gaps = 100/506 (19%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQ-EILTYFRGSELQNYFTRI 159
RPG+ +GL G NG GKST +KIL+G + P+ W EI Y+ GS L+ R
Sbjct: 25 RPGECVGLCGENGAGKSTLMKILSG-VYPH-------GTWDGEI--YWSGSPLKASNIRD 74
Query: 160 LEDNLKAIIKPQYVDHIPK-AVQGNV--GQVLDQKDERDMKADL----CTDLDLNQV--- 209
E II Q + +P+ +V N+ G + R M + +L L ++
Sbjct: 75 TERAGIVIIH-QELTLVPELSVAENIFLGNEITLPGGR-MAYNAMYLRAKNL-LRELQLD 131
Query: 210 ---IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
+ R VGD GG+ Q IA + A + + DEPSS L K+ ++R L
Sbjct: 132 ADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHG 191
Query: 267 SYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRD 326
+ + H L+ + + D IC +R+G ++ + D
Sbjct: 192 VACVYISHKLNEVKAVCDTICV----------------IRDGQHV---ATKDMSTMSEDD 232
Query: 327 -------ESLTFRVAETPQESAEEI----ETYARYKYPTMVKTQGNFKLKVVEGEFTDSQ 375
+T P E + I K + + GE
Sbjct: 233 IITMMVGREITSLYPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGE----- 287
Query: 376 IIVMLGENGTGKTTFIRMLAGLL------------KP-------DSVEDSDVEIPEFNVS 416
I+ + G G G+T ++ L G KP ++ +PE
Sbjct: 288 ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPE---D 344
Query: 417 YKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ----------EVV 466
K I P V + + S+ + + +I + + +
Sbjct: 345 RKRHGIVP--ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG 402
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF-VVE 525
LSGG Q+ L L + ++DEP+ +D + K+I L + A VV
Sbjct: 403 RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI--NQLAQEGVAIIVVS 460
Query: 526 HDFIMATYLADRVIV-YEGQPSVDCV 550
+ L+DRV+V EG+ D V
Sbjct: 461 SELAEVLGLSDRVLVIGEGKLKGDFV 486
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV-----EIP 411
+F L+ GEF ++ G +G GK+T ++++A L+ P S E D+ EI
Sbjct: 27 SFSLR--AGEFK-----LITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79
Query: 412 EFNVSYKPQKISPK-FQSTVRH--LLHQKIRDSYTHPQ-FVSDVMKPLLIEQLMDQEVVN 467
VSY Q +P F TV + +IR+ P F+ D+ + L + ++ + +
Sbjct: 80 RQQVSYCAQ--TPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAE 137
Query: 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527
LSGGE QR++L L + L+DE ++ LD + ++I R++ V HD
Sbjct: 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
Query: 528 FIMATYLADRVI 539
+ AD+VI
Sbjct: 198 KDEINH-ADKVI 208
|
Length = 225 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 29/194 (14%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--------FNNPPDWQEILTYFRGSEL 152
+ G++ G +G NG GK+T +KI+ G +KP+ G N + I
Sbjct: 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGF 83
Query: 153 QNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDR 212
T +NL+ + + + I K + +VLD + L +
Sbjct: 84 YPNLTA--RENLRLLAR---LLGIRKK---RIDEVLDV-------------VGLKDSAKK 122
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVV 272
V S G QR IA+ + N ++ + DEP++ LD + +++ SL V++
Sbjct: 123 KVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLIS 182
Query: 273 EHDLSVLDYLSDFI 286
H LS + ++D I
Sbjct: 183 SHLLSEIQKVADRI 196
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 51/216 (23%), Positives = 83/216 (38%), Gaps = 51/216 (23%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
+ L+V GE I+ ++G NG GKTT ++ G KP S D+
Sbjct: 22 DVSLEVRPGE-----IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT------G 70
Query: 417 YKPQKISPK-----FQST-------------VRHLLHQKIRDSYTHPQFVSDVMKPLLIE 458
P +I+ FQ T V + P+ + + E
Sbjct: 71 LPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKE--EREARE 128
Query: 459 QLM------------DQEVVNLSGGELQRV--ALCLCLGKPADIYLIDEPSAYLDSEQRI 504
+ D+ NLS G+ +R+ A L + L+DEP+A L+ E+
Sbjct: 129 RARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQ--PKLLLLDEPAAGLNPEETE 186
Query: 505 VAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
A++I+ T ++EHD + LADR++V
Sbjct: 187 ELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVV 222
|
Length = 250 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 21/196 (10%)
Query: 97 LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF 156
V G+V G +G NG GK+T +++L L+P G + Y E +
Sbjct: 14 FKVRE-GEVFGFLGPNGAGKTTTIRMLTTLLRPTSGT-------ARVAGYDVVREPRKVR 65
Query: 157 TRILEDNLKAIIKPQY--VDHIPKAVQGNV--GQVLD-QKDERDMKADLCTDL-DLNQVI 210
I I PQY VD + G++ KDE + +A+ +L +L +
Sbjct: 66 RSIG-------IVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA 118
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
DR VG SGG +R IA + ++ DEP++ LD + R +R+L ++
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 271 VVEHDLSVLDYLSDFI 286
+ H + D L D I
Sbjct: 179 LTTHYMEEADKLCDRI 194
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 3e-10
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 18/201 (8%)
Query: 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD------SVEDSDV- 408
V N L + E +++ ++G++G GKTT +R +AG +K ++ D D+
Sbjct: 13 VAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT 72
Query: 409 EIPEFN----VSYKPQKISP--KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD 462
P + ++ + P K + V L + + V+D +K + +
Sbjct: 73 HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA 132
Query: 463 QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK---K 519
LSGG QR+A+ + D+ L+DEP + LD+ R + I LH +
Sbjct: 133 HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAA--LHEELPEL 190
Query: 520 TAFVVEHDFIMATYLADRVIV 540
T V HD A LAD+ +
Sbjct: 191 TILCVTHDQDDALTLADKAGI 211
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 47/208 (22%), Positives = 83/208 (39%), Gaps = 24/208 (11%)
Query: 352 YPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVE 409
YP + + GEF ++G +G GK+T ++++ P S + + +
Sbjct: 10 YPNGTAALDGINISISAGEFV-----FLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQD 64
Query: 410 IPEFN---VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ-EV 465
+ + + Y +KI FQ R L + + ++ V+ V + +++ E+
Sbjct: 65 VSDLRGRAIPYLRRKIGVVFQDF-RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALEL 123
Query: 466 VN-----------LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI 514
V LSGGE QRVA+ + I + DEP+ LD + ++K+
Sbjct: 124 VGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN 183
Query: 515 LHAKKTAFVVEHDFIMATYLADRVIVYE 542
A T V H + RVI E
Sbjct: 184 K-AGTTVVVATHAKELVDTTRHRVIALE 210
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 4e-10
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 25/158 (15%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG---------RFNNPPDWQE--ILTYFRG 149
+ G++ L+G NG GKST +KIL G +P+ G R +P D I
Sbjct: 28 KKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVH-- 85
Query: 150 SELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQV 209
Q+ F L L ++I ++ + G ++D++ R +L L
Sbjct: 86 ---QH-FM--LVPTLTV------AENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD 133
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYL 247
D V DLS GE QR I + A + + DEP++ L
Sbjct: 134 PDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVL 171
|
Length = 501 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 4e-10
Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 50/198 (25%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAG--KLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158
+ G+V L+G NG GKST K + G K + G IL F+G ++ +
Sbjct: 24 KKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE---------IL--FKGEDITD---- 68
Query: 159 ILEDNLKA----IIKPQYVDHIPKAVQG-NVGQVLDQKDERDMKADLCTDLDLNQVIDRN 213
L +A + QY P + G L R + N
Sbjct: 69 -LPPEERARLGIFLAFQY----PPEIPGVKNADFL-----RYV----------------N 102
Query: 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
G SGGE +R I + + ++ + DEP S LD+ A+V+ L V+++
Sbjct: 103 EG-FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIIT 161
Query: 274 HDLSVLDYL-SDFICCLY 290
H +LDY+ D + LY
Sbjct: 162 HYQRLLDYIKPDRVHVLY 179
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 5e-10
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 35/212 (16%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP--DSVEDSDVEIPEFNVSYK 418
N +++ +G FT ++G NG GK+T +R L+ L+ P V I +
Sbjct: 25 NLTVEIPDGHFT-----AIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79
Query: 419 PQKISPKFQS-------TVRHLLHQKIRDSYTH-PQF----------VSDVMKPLLIEQL 460
++I Q+ TV+ L+ R Y H P F V+ M+ I L
Sbjct: 80 ARRIGLLAQNATTPGDITVQELV---ARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL 136
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKT 520
DQ V LSGG+ QR + + L + I L+DEP+ +LD +I +++ T
Sbjct: 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYT 196
Query: 521 AFVVEHDFIMATYLA-------DRVIVYEGQP 545
V HD A A + IV +G P
Sbjct: 197 LAAVLHDLNQACRYASHLIALREGKIVAQGAP 228
|
Length = 265 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 30/199 (15%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNV 415
N L + GEF + +LG +G GKTT +R++AG PDS ++ D+ +V
Sbjct: 31 SNLDLTINNGEF-----LTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT----HV 81
Query: 416 SYKPQKISPKFQS-------TVRH-----LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ 463
+ + ++ FQS TV L QK + P+ V + ++ + +E+ +
Sbjct: 82 PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPR-VMEALRMVQLEEFAQR 140
Query: 464 EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK-KTAF 522
+ LSGG+ QRVA+ + + L+DE + LD + R +K L K F
Sbjct: 141 KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKA--LQRKLGITF 198
Query: 523 V-VEHDFIMATYLADRVIV 540
V V HD A ++DR++V
Sbjct: 199 VFVTHDQEEALTMSDRIVV 217
|
Length = 375 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 5e-10
Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 54/239 (22%)
Query: 81 KDTTHRYGPNT------FKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG-- 132
++ T R+G T F + + G++ GL+G NG GK+T ++++ G + P+ G
Sbjct: 4 ENVTKRFGRVTALDDISFSVEK------GEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 133 RFNNPPDWQEILTYF------RG-------SELQNYFTRILEDNLKAIIKPQYVDHIPKA 179
F+ P RG + Y + LK
Sbjct: 58 LFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQ-----LKG------------- 99
Query: 180 VQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239
L +++ R + L+L++ ++ V +LS G Q+ + + E+ +
Sbjct: 100 --------LKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151
Query: 240 FDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY-GKPGAYG 297
DEP S LD V+R L R VI+ H + +++ L D + L G+ YG
Sbjct: 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 5e-10
Identities = 58/196 (29%), Positives = 82/196 (41%), Gaps = 57/196 (29%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQST------- 429
I +LG NG GK+T +R++AG+ K + E P V Y PQ+ P+ T
Sbjct: 34 IGVLGLNGAGKSTLLRIMAGVDKEFNGEA--RPAPGIKVGYLPQE--PQLDPTKTVRENV 89
Query: 430 ---VRHLLH-----QKIRDSYTHPQFVSDVMKPLL---------------------IEQL 460
V + +I + P M LL +E
Sbjct: 90 EEGVAEIKDALDRFNEISAKFAEP---DADMDALLAEQAELQEIIDAADAWDLDRKLEIA 146
Query: 461 M--------DQEVVNLSGGELQRVALC-LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK 511
M D +V LSGGE +RVALC L L KP D+ L+DEP+ +LD+E VA ++
Sbjct: 147 MDALRCPPWDADVTKLSGGERRRVALCRLLLSKP-DMLLLDEPTNHLDAES--VAW--LE 201
Query: 512 RFILHAKKTAFVVEHD 527
+ + T V HD
Sbjct: 202 QHLQEYPGTVVAVTHD 217
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 19/185 (10%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKP---NLGRFNNPP---DWQEIL---TYFRGSE 151
PG+ +VG NG GK+T L +L G+ P ++ + L SE
Sbjct: 55 NPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSE 114
Query: 152 LQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVID 211
L F + ++ ++ + I G + L ++ L L + D
Sbjct: 115 LHERFRV--RETVRDVVLSGFFASI-----GIYQEDLT-AEDLAAAQWLLELLGAKHLAD 166
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS--YV 269
R G LS GE +R IA V++ E+ + DEP+ LD+ R + + L +
Sbjct: 167 RPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPAL 226
Query: 270 IVVEH 274
+ V H
Sbjct: 227 LFVTH 231
|
Length = 257 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 6e-10
Identities = 58/207 (28%), Positives = 86/207 (41%), Gaps = 23/207 (11%)
Query: 81 KDTTHRY-GPNTFKLHRLPVPRP-GQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNN 136
K+ + +Y +F L + P GQ +VG NG GKST K++ G K G +NN
Sbjct: 11 KNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNN 70
Query: 137 PPDWQEILTYFR---GSELQNYFTRILEDNLKAIIKPQYVDHIPK--AVQGNVGQVLDQK 191
+ R G QN DN Q+V I K G +
Sbjct: 71 QAITDDNFEKLRKHIGIVFQN------PDN-------QFVGSIVKYDVAFGLENHAVPYD 117
Query: 192 DERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQ 251
+ ++ +D+ + D LSGG+ QR AIA V N + + DE +S LD
Sbjct: 118 EMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA 177
Query: 252 RLKAAQVVRSLLRPNSYVIV-VEHDLS 277
R +VR + ++ I+ + HDLS
Sbjct: 178 RQNLLDLVRKVKSEHNITIISITHDLS 204
|
Length = 269 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 6e-10
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 13/193 (6%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD----SVEDSDVEIP--EFN 414
+ L + GE +V+LG +G GKTT + ++AG + P + +E P E
Sbjct: 23 DVSLTIASGEL-----VVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERG 77
Query: 415 VSYKPQKISP--KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGE 472
V ++ + + P V L + + + ++ + +E + + LSGG
Sbjct: 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGM 137
Query: 473 LQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMAT 532
QRV + L + L+DEP LD+ R +++ K ++ HD A
Sbjct: 138 RQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEAL 197
Query: 533 YLADRVIVYEGQP 545
+LA R++V P
Sbjct: 198 FLATRLVVLSPGP 210
|
Length = 259 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 7e-10
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 30/197 (15%)
Query: 91 TFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGS 150
+F LH PG+V LVG +G GKST + +L F P Q +L G
Sbjct: 34 SFTLH------PGEVTALVGPSGSGKSTVVALLE--------NFYQPQGGQVLLD---GK 76
Query: 151 ELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQK-DERDMKADLCTDLD---- 205
+ Y + L + + + + +++Q N+ L E +A
Sbjct: 77 PISQYEHKYLHSKVSLVGQEPVL--FARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFIS 134
Query: 206 -LNQVIDRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVR 260
L D VG+ LSGG+ QR AIA ++N ++ + DE +S LD + + Q +
Sbjct: 135 ELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY 194
Query: 261 SLLRPNSYVIVVEHDLS 277
+ V+V+ H LS
Sbjct: 195 DWPERRT-VLVIAHRLS 210
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 7e-10
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 25/188 (13%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP---------QKISPKFQ 427
+V+LG +G GK++ +R+L L P S + + F+ S P + + FQ
Sbjct: 31 LVLLGPSGAGKSSLLRVLNLLEMPRSGTLN-IAGNHFDFSKTPSDKAIRDLRRNVGMVFQ 89
Query: 428 S-------TVRHLLHQ------KIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQ 474
TV+ L + + + ++K L ++ D+ ++LSGG+ Q
Sbjct: 90 QYNLWPHLTVQENLIEAPCRVLGLSKDQALAR-AEKLLKRLRLKPYADRYPLHLSGGQQQ 148
Query: 475 RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL 534
RVA+ L + L DEP+A LD E +IK + T +V H+ +A
Sbjct: 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKE-LAETGITQVIVTHEVEVARKT 207
Query: 535 ADRVIVYE 542
A RV+ E
Sbjct: 208 ASRVVYME 215
|
Length = 242 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 8e-10
Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 29/193 (15%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
+F++ GE I ++G NG GK+T +R+LAG+ PDS V +
Sbjct: 42 SFEVP--RGE-----RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGG 94
Query: 417 YKPQKISPKFQSTVRH-------LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLS 469
+ P + T R LL ++ + + + + +D V S
Sbjct: 95 FNP-------ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSE---LGDFIDLPVKTYS 144
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFI 529
G R+A + DI LIDE A D+ + + ++ + KT +V HD
Sbjct: 145 SGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG-KTVILVSHDPS 203
Query: 530 MATYLADRVIVYE 542
L DR +V E
Sbjct: 204 SIKRLCDRALVLE 216
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 39/225 (17%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE---DSDVEI---PEFN 414
+ V GE V++G NG GKTT + ++ G +P E D D ++ PE
Sbjct: 23 DLSFSVDPGELR-----VLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR 77
Query: 415 VSYKPQKISPKFQS-------TVRHLL------HQKIRDS--YTHPQFVSDVMKPLL--- 456
++ I KFQ TVR L + + S + LL
Sbjct: 78 IARA--GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATI 135
Query: 457 -IEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515
+ D+ LS G+ Q + + + L + + L+DEP A + + A+++K L
Sbjct: 136 GLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS--L 193
Query: 516 HAKKTAFVVEHDFIMATYLADRVIV-YEGQ----PSVDCVANAPQ 555
K + VVEHD +AD+V V +EG S+D V N P+
Sbjct: 194 AGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPK 238
|
Length = 249 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 39/186 (20%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
N L++ +GE I +LG +G+GK+T +++L G LKP E + + VS
Sbjct: 20 NLSLELKQGEK-----IALLGRSGSGKSTLLQLLTGDLKPQQGE---ITLDGVPVS---- 67
Query: 421 KISPKFQSTVRHL---LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVA 477
+ + L L+Q+ L L + SGGE QR+A
Sbjct: 68 ----DLEKALSSLISVLNQRPY---------------LFDTTLRNNLGRRFSGGERQRLA 108
Query: 478 LCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK-KTAFVVEHDFIMATYLAD 536
L L + A I L+DEP+ LD I +++ K KT + H + D
Sbjct: 109 LARILLQDAPIVLLDEPTVGLD---PITERQLLSLIFEVLKDKTLIWITHHLTGIEH-MD 164
Query: 537 RVIVYE 542
+++ E
Sbjct: 165 KILFLE 170
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 25/159 (15%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
G+ L + G NG GK+T L+ILAG L+P+ G Y++G +QN
Sbjct: 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDAGE-----------VYWQGEPIQNVRESYH 74
Query: 161 EDNLKAIIKPQYVDHIPK-----AVQGNVG--QVLDQKDERDMKADLCTDLDLNQVIDRN 213
+ L Y+ H P N+ Q + + L + D
Sbjct: 75 QALL-------YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP 127
Query: 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252
VG LS G+ +R A+A + + A +++ DEP + LD +
Sbjct: 128 VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
|
Length = 209 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 27/196 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--------FNNPPDWQEILTY-FRGSE 151
R G++ GL+G NG GK+T +K+L LKP GR P + + + F+
Sbjct: 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLS 83
Query: 152 LQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVID 211
+ + T +NL +I + G G ++ + + + L + D
Sbjct: 84 VDDELTG--WENL----------YIHARLYGVPGAERRERIDELLDF-----VGLLEAAD 126
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVI 270
R V SGG +R IA V E+ DEP+ LD + R + + L ++
Sbjct: 127 RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTIL 186
Query: 271 VVEHDLSVLDYLSDFI 286
+ H + + L D +
Sbjct: 187 LTTHYMEEAEQLCDRV 202
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 30/192 (15%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--------NNPPDWQEILTYFRGSEL 152
+PG+ +G+VG +G GKST K+L P G+ P W L G L
Sbjct: 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW---LRRQMGVVL 537
Query: 153 QN--YFTRILEDNLKAIIKPQY-VDHIPKAVQ--GNVGQVLDQKDERDMKADLCTDLDLN 207
Q F+R + DN+ A+ P +H+ A + G + + N
Sbjct: 538 QENVLFSRSIRDNI-ALCNPGAPFEHVIHAAKLAGAHDFISELPQ------------GYN 584
Query: 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS 267
+ +LSGG+ QR AIA V N I +FDE +S LD + + +R + R
Sbjct: 585 TEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GR 643
Query: 268 YVIVVEHDLSVL 279
VI++ H LS +
Sbjct: 644 TVIIIAHRLSTV 655
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 21/229 (9%)
Query: 84 THRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPN------LGRFNNP 137
T R G + VP G + LVG NG GKST K L G ++ LG+
Sbjct: 15 TWRNGHTALRDASFTVPG-GSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ 73
Query: 138 PDWQEILTYFRGSELQNY-FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQV-LDQKDERD 195
+ ++ Y SE ++ F ++ED ++ +Y G++G + +K +R
Sbjct: 74 ALQKNLVAYVPQSEEVDWSFPVLVED---VVMMGRY---------GHMGWLRRAKKRDRQ 121
Query: 196 MKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA 255
+ +D+ + R +G+LSGG+ +R +A Q ++ + DEP + +DVK +
Sbjct: 122 IVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARI 181
Query: 256 AQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFS 304
++R L ++V H+L + D+ + G A G F+
Sbjct: 182 ISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTFT 230
|
Length = 272 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 1e-09
Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 49/177 (27%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-PDSVEDSDVEIPEFNVSYKP 419
NF L Q I ++G +G GKT+ + L G L S++ + +E+ E +
Sbjct: 370 NFTLP-------AGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWR 422
Query: 420 QKIS-----PKFQSTVRHLLHQKIRDSYT--HPQFVSDVMKPLLIEQLMDQEVVN----- 467
+ +S P L H +RD+ +P ++Q ++ V+
Sbjct: 423 KHLSWVGQNP-------QLPHGTLRDNVLLGNPD-----ASDEQLQQALENAWVSEFLPL 470
Query: 468 ---------------LSGGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAA 507
LS G+ QR+AL L +P + L+DEP+A LD SEQ ++ A
Sbjct: 471 LPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527
|
Length = 588 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYK------------PQKI 422
+++ +LG NG GK+T ++ L+G L PDS E V + ++ PQ
Sbjct: 28 EVLAILGPNGAGKSTLLKALSGELSPDSGE---VTLNGVPLNSWPPEELARHRAVLPQNS 84
Query: 423 SPKFQSTVRHLL------HQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRV 476
S F TV+ ++ H+ R+ + + + + L ++ LSGGE QRV
Sbjct: 85 SLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRV 144
Query: 477 ALCLCL-----GKPADIYL-IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIM 530
L L P+ +L +DEP++ LD + ++ ++ V HD +
Sbjct: 145 QLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA-REGGAVLAVLHDLNL 203
Query: 531 ATYLADRVIV-YEGQPSVDCVAN-APQSLLT 559
A ADR+++ ++G+ +A+ +PQ +LT
Sbjct: 204 AAQYADRIVLLHQGRV----IASGSPQDVLT 230
|
Length = 259 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 22/199 (11%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
G+ L L+G +G GK+T LK++ ++P G G ++ + L
Sbjct: 26 EGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI-----------LIDGEDISDLDPVELR 74
Query: 162 DNLKAIIKPQYVDHIP-KAVQGNVGQVLD----QKDERDMKAD---LCTDLDLNQVIDRN 213
+ +I Q + P V N+ V K+ +AD LD ++ DR
Sbjct: 75 RKIGYVI--QQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRY 132
Query: 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVV 272
+LSGG+ QR +A + I + DEP LD R + + ++ L + ++ V
Sbjct: 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV 192
Query: 273 EHDLSVLDYLSDFICCLYG 291
HD+ L+D I +
Sbjct: 193 THDIDEALKLADRIAVMDA 211
|
Length = 309 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 2e-09
Identities = 63/233 (27%), Positives = 99/233 (42%), Gaps = 45/233 (19%)
Query: 87 YGPNTFKLHRLPVPRP-GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145
YG T L V P G ++G NG GKST L+ L+ + P G
Sbjct: 17 YGKYTVA-ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGH-----------V 64
Query: 146 YFRGSELQNYFTR-------ILEDN--------LKAIIKPQYVDHIPKAVQGNVGQVLDQ 190
+ G +Q+Y ++ +L N ++ ++ H P + +
Sbjct: 65 WLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWR------K 118
Query: 191 KDE----RDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
+DE + M+A T L D++V LSGG+ QR IA+V Q I + DEP+++
Sbjct: 119 EDEEAVTKAMQATGITHL-----ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTW 173
Query: 247 LDVKQRLKAAQVVRSLLRPNSYVI-VVEHDLS-VLDYLSDFICCLYGKPGAYG 297
LD+ ++ +++ L R Y + V HDL+ Y S I GK A G
Sbjct: 174 LDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQG 226
|
Length = 265 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 58/179 (32%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 379 MLGENGTGKTTFIRMLAGLLKPD--SVEDSDVEIPE------FNVSYKPQ--KISPKFQS 428
+LG NG GKTT +RML GL PD S+ +P V PQ + P F
Sbjct: 38 LLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDF-- 95
Query: 429 TVRHLLHQKIRDSYTHPQFVSDVMKPLL----IEQLMDQEVVNLSGGELQRVALCLCLGK 484
TVR L R ++ PLL +E D +V LSGG +R+ L L
Sbjct: 96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155
Query: 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543
D+ ++DEP+ LD + R + + + R +L KT + H A L DR+ V E
Sbjct: 156 DPDVLVLDEPTTGLDPQARHLMWERL-RSLLARGKTILLTTHFMEEAERLCDRLCVIEE 213
|
Length = 306 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 31/185 (16%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNNPP------DWQEILTYF-RGSEL 152
G+ L + G NGIGK+T L+ILAG L+P+ G R+N + + Y L
Sbjct: 25 AGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGL 84
Query: 153 QNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDR 212
+ + +NL + I Q + L + L D
Sbjct: 85 KPELS--ALENL------HFWAAIHGGAQRTIEDALAA-------------VGLTGFEDL 123
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK-QRLKAAQVVRSLLRPNSYVIV 271
LS G+ +R A+A + + A +++ DEP++ LD L A + L R ++
Sbjct: 124 PAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLT 183
Query: 272 VEHDL 276
DL
Sbjct: 184 THQDL 188
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 37/191 (19%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLL 434
+I+ LG NG GK+T ++ML GLL P S + V + P + ++ ++ ++
Sbjct: 51 EIVGFLGANGAGKSTTLKMLTGLLLPTSGK---VRV----NGKDPFRRREEYLRSIGLVM 103
Query: 435 HQK--------IRDSYTHPQFVSDV-----------MKPLL-IEQLMDQEVVNLSGGELQ 474
QK DS + + ++ + +L +E + V LS G+
Sbjct: 104 GQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRM 163
Query: 475 RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV-IKRFI--LHAKKTAFVV--EHDFI 529
R L L P + +DEP+ LD V A+ I+ F+ + ++ A V+ H F
Sbjct: 164 RAELAAALLHPPKVLFLDEPTVGLD-----VNAQANIREFLKEYNEERQATVLLTTHIFD 218
Query: 530 MATYLADRVIV 540
L DRV++
Sbjct: 219 DIATLCDRVLL 229
|
Length = 325 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 27/184 (14%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNY------- 155
GQV+ ++G++G GK+T L ++G++ G + +IL F G +
Sbjct: 33 GQVMAILGSSGSGKTTLLDAISGRV-EGGGTTSG-----QIL--FNGQPRKPDQFQKCVA 84
Query: 156 FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVG 215
+ R + L + + + + R + + D+ L + +G
Sbjct: 85 YVRQDDILLPGLTVRETLTYTAI----LRLPRKSSDAIRKKRVE---DVLLRDLALTRIG 137
Query: 216 D-----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
+SGGE +R +IAV + + ++ + DEP+S LD L + L R N VI
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 271 VVEH 274
+ H
Sbjct: 198 LTIH 201
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 62/206 (30%), Positives = 93/206 (45%), Gaps = 31/206 (15%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVS-- 416
+ L V EGE I V++G +G+GK+T +R + L++P S V +I +
Sbjct: 42 DVSLDVREGE-----IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKEL 96
Query: 417 --YKPQKISPKFQSTVRHLL-HQKIRDSYTHPQFVSDVMKPLLIEQLMDQ-EVVN----- 467
+ +KIS FQS LL H+ + ++ V V + E+ + E+V
Sbjct: 97 RELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE 154
Query: 468 ------LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK--K 519
LSGG QRV L L DI L+DE + LD R + R L A+ K
Sbjct: 155 HKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLR--LQAELQK 212
Query: 520 TAFVVEHDFIMATYLADRV-IVYEGQ 544
T + HD A L DR+ I+ +G+
Sbjct: 213 TIVFITHDLDEALRLGDRIAIMKDGR 238
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 45/209 (21%)
Query: 101 RPGQVLGLVGTNGIGKST-ALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF--- 156
R GQ LGLVG +G GKST L +L +L P+ G F G ++
Sbjct: 311 RRGQTLGLVGESGSGKSTLGLALL--RLIPSQGEI-----------RFDGQDIDGLSRKE 357
Query: 157 TRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL-------------DQKDERDMKADLCTD 203
R L ++ + + Y P+ VGQ++ ++D+R ++A
Sbjct: 358 MRPLRRRMQVVFQDPYGSLSPRM---TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVG 414
Query: 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263
LD +R + SGG+ QR AIA + E+ + DEP+S LD + AQV+ LL
Sbjct: 415 LDPA-TRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQ---AQVL-DLL 469
Query: 264 RP------NSYVIVVEHDLSVLDYLSDFI 286
R SY + + HDL+V+ L +
Sbjct: 470 RDLQQKHGLSY-LFISHDLAVVRALCHRV 497
|
Length = 534 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 42/192 (21%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI-------LTYFRGSELQN 154
PG +GL+G NG GKST +K+LAG+L P G EI L YF +L+
Sbjct: 337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSG---------EIGLAKGIKLGYFAQHQLE- 386
Query: 155 YFTRILEDNLK--AIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDR 212
F R E L+ A + PQ ++ + G G + D T+
Sbjct: 387 -FLRADESPLQHLARLAPQELEQKLRDYLGGFG----------FQGDKVTE--------- 426
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVV 272
SGGE R +A++ Q + + DEP+++LD+ R + +L+ ++VV
Sbjct: 427 ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMR---QALTEALIDFEGALVVV 483
Query: 273 EHDLSVLDYLSD 284
HD +L +D
Sbjct: 484 SHDRHLLRSTTD 495
|
Length = 638 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-09
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 20/183 (10%)
Query: 379 MLGENGTGKTTFIRMLAGLLKPD----SVEDSDV-----EIPEFNVSYKPQKISPKFQST 429
+LG NG+GK+T +R+LAG L+PD + D+ V+ Q T
Sbjct: 32 LLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91
Query: 430 VRHLL------HQKI--RDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481
VR ++ H+ + DS V + + L D+++ LSGGE QRV +
Sbjct: 92 VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151
Query: 482 LGKPADIYLIDEPSAYLD-SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
L + + L+DEP+ +LD Q A V R + T HD +A D V+V
Sbjct: 152 LAQEPKLLLLDEPTNHLDVRAQLETLALV--RELAATGVTVVAALHDLNLAASYCDHVVV 209
Query: 541 YEG 543
+G
Sbjct: 210 LDG 212
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 62/242 (25%), Positives = 99/242 (40%), Gaps = 51/242 (21%)
Query: 66 PFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAG 125
P E + N+ +F+L G + LVG G GKST ++
Sbjct: 17 PMEKKGLDNI---------------SFEL------EEGSFVALVGHTGSGKSTLMQHFNA 55
Query: 126 KLKPNLGRFN------NPPDWQEILT--------YFRGSELQNYFTRILEDNLKAIIKPQ 171
LKP+ G P + L F+ E Q + +L+D
Sbjct: 56 LLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKD--------- 106
Query: 172 YVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231
V+ PK N G D+ E+ +K L +I ++ +LSGG+++R AIA V
Sbjct: 107 -VEFGPK----NFGFSEDEAKEKALKWLKKVGLS-EDLISKSPFELSGGQMRRVAIAGVM 160
Query: 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL-SVLDYLSDFICCLY 290
EI DEP++ LD + R + Q+ + + VI+V H++ V +Y D + +
Sbjct: 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEH 220
Query: 291 GK 292
GK
Sbjct: 221 GK 222
|
Length = 287 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 30/195 (15%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV-EIPEFNVSYK 418
L + EGEF +LG +G GKTT +R++AG P S ++ D+ +P +K
Sbjct: 21 LDIKEGEF-----FTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP----PHK 71
Query: 419 PQKISPKFQSTV--RHL---------LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVN 467
+ ++ FQ+ HL L K + V++ + + +E +++
Sbjct: 72 -RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQ 130
Query: 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK-KTAFV-VE 525
LSGG+ QRVA+ L + L+DEP LD + R +KR L + FV V
Sbjct: 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKR--LQKELGITFVFVT 188
Query: 526 HDFIMATYLADRVIV 540
HD A ++DR+ V
Sbjct: 189 HDQEEALTMSDRIAV 203
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 29/194 (14%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIP-------EF 413
+ ++ +GE + ++G NG GK+T ++++AG+ KP S + V++ E
Sbjct: 45 DISFEIYKGER-----VGIIGHNGAGKSTLLKLIAGIYKPTSGK---VKVTGKVAPLIEL 96
Query: 414 NVSYKPQ-----KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNL 468
+ P+ I + + L ++I + + + + + +DQ V
Sbjct: 97 GAGFDPELTGRENI--YLRGLILGLTRKEIDEKV---DEIIEFAE---LGDFIDQPVKTY 148
Query: 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528
S G R+A + DI L+DE A D+ + + + + KT +V HD
Sbjct: 149 SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE-KNKTIVLVSHDL 207
Query: 529 IMATYLADRVIVYE 542
DR I E
Sbjct: 208 GAIKQYCDRAIWLE 221
|
Length = 249 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 53/217 (24%), Positives = 89/217 (41%), Gaps = 40/217 (18%)
Query: 85 HRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144
R G + +P G V + G +G GK+T ++++AG +P+ G
Sbjct: 7 KRLGDFSLDA-DFTLPGQG-VTAIFGRSGSGKTTLIRLIAGLTRPDEGEI---------- 54
Query: 145 TYFRGSELQNYFTRILEDNLKAIIKPQ------YV-------DHIPKAVQGNV--GQVLD 189
G R L D+ K I P YV H+ +V+GN+ G
Sbjct: 55 -VLNG--------RTLFDSRKGIFLPPEKRRIGYVFQEARLFPHL--SVRGNLRYGMKRA 103
Query: 190 QKDERDMKADLCTD-LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
+ ER + + + L + ++ R G LSGGE QR AI + + + + DEP + LD
Sbjct: 104 RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
Query: 249 VKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSD 284
++ + + L ++ V H L + L+D
Sbjct: 164 DPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLAD 200
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-09
Identities = 49/211 (23%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR-------FNNPPDWQEILTYFRGSELQ 153
+ G++LG+VG +G GKS K + G L R F+ +++L+ EL+
Sbjct: 29 KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDG----KDLLS-LSEKELR 83
Query: 154 NYFTR----ILEDNLKAI-----IKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL 204
+ I +D + ++ I Q + + +G L +K+ ++ +L +
Sbjct: 84 KIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG-----LSKKEAKERAIELLELV 138
Query: 205 DLN---QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRS 261
+ + + +LSGG QR IA+ N ++ + DEP++ LDV + + +++
Sbjct: 139 GIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE 198
Query: 262 LLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291
L R + +I++ HDL V+ ++D + +Y
Sbjct: 199 LQREKGTALILITHDLGVVAEIADRVAVMYA 229
|
Length = 316 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 5e-09
Identities = 58/240 (24%), Positives = 94/240 (39%), Gaps = 40/240 (16%)
Query: 81 KDTTHRYGPNTFKLH-----RLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135
++ + YG + L V G+ + LVG +G GKST L+I+AG +P G
Sbjct: 4 RNVSKTYGGGGGAVTALEDISLSVE-EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV- 61
Query: 136 NPPDWQEILTYFRGSELQNYFTRIL----EDNLKAIIKPQYVDHIP-KAVQGNVGQVLD- 189
G + +D L +P V NV L+
Sbjct: 62 ----------LVDGEPVTGPGPDRGYVFQQDAL-----------LPWLTVLDNVALGLEL 100
Query: 190 ---QKDERDMKADLCTDL-DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSS 245
K E +A+ +L L+ + LSGG QR A+A + ++ + DEP S
Sbjct: 101 QGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS 160
Query: 246 YLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGKPGAY-GVVTLPF 303
LD R + + + + R V++V HD+ +L+D + L +PG V +
Sbjct: 161 ALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVDL 220
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 5e-09
Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 19/192 (9%)
Query: 363 KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNV--- 415
+L + GE +I+ ++G NG GK+T + +AG+ S +E
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELAR 72
Query: 416 --SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGEL 473
+Y Q+ +P F V H L D T + ++DV L ++ + + LSGGE
Sbjct: 73 HRAYLSQQQTPPFAMPVWHYLTLHQPDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEW 131
Query: 474 QRV---ALCL----CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526
QRV A+ L + L+DEP LD Q+ +++ + H
Sbjct: 132 QRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC-QQGLAIVMSSH 190
Query: 527 DFIMATYLADRV 538
D A R
Sbjct: 191 DLNHTLRHAHRA 202
|
Length = 248 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 5e-09
Identities = 54/214 (25%), Positives = 88/214 (41%), Gaps = 33/214 (15%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKP 419
L +GE + +LG NG GKTT +R + GL+ P V + ++ Y P
Sbjct: 1 LSADKGEL-----LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVP 55
Query: 420 QK--ISPKFQSTVRH-----------LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVV 466
Q+ + F +V H L + + V D ++ + + +L D+ V
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA---VRDALRRVGLTELADRPVG 112
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
LSGG+ QRV + L + L+DEP LD +++ + + + A +
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE---LFIELAGAGTAILMT 169
Query: 525 EHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558
HD A DRV++ G+ D PQ L
Sbjct: 170 THDLAQAMATCDRVVLLNGRVIAD---GTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 13/202 (6%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
PG++ L+G NG GKST +K+L+G +P G L + ++L I+
Sbjct: 29 YPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG---IGII 85
Query: 161 EDNLKAI-----IKPQYVDHIP-KAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV 214
L I ++ Y+ K V G ++D ++ R A + + L +D V
Sbjct: 86 YQELSVIDELTVLENLYIGRHLTKKVCGV--NIIDWREMRVRAAMMLLRVGLKVDLDEKV 143
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEH 274
+LS Q IA + +A++ + DEP+S L K+ ++ L + + ++ + H
Sbjct: 144 ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISH 203
Query: 275 DLSVLDYLSDFICCLYGKPGAY 296
L+ + + D + K G+
Sbjct: 204 KLAEIRRICDRYTVM--KDGSS 223
|
Length = 510 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 5e-09
Identities = 53/173 (30%), Positives = 75/173 (43%), Gaps = 59/173 (34%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI---PEFNVSYKPQKISPKF--QSTVR 431
I +LG NG GK+T +R++AG+ K + + E P V Y PQ+ P+ + TVR
Sbjct: 36 IGVLGLNGAGKSTLLRIMAGVDK-----EFEGEARPAPGIKVGYLPQE--PQLDPEKTVR 88
Query: 432 -----------HLLHQ--KIRDSYTHPQFVSDVMKPLL---------------------I 457
L + +I +Y P L +
Sbjct: 89 ENVEEGVAEVKAALDRFNEIYAAYAEP---DADFDALAAEQGELQEIIDAADAWDLDSQL 145
Query: 458 EQLM--------DQEVVNLSGGELQRVALC-LCLGKPADIYLIDEPSAYLDSE 501
E M D +V LSGGE +RVALC L L KP D+ L+DEP+ +LD+E
Sbjct: 146 EIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKP-DMLLLDEPTNHLDAE 197
|
Length = 556 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 5e-09
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 27/201 (13%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPE---- 412
L + +GEF I ++G +G GK+T + +++GL +P S +E + P
Sbjct: 3 GVNLTIQQGEF-----ISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM 57
Query: 413 --F-NVSYKP-----QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQE 464
F N S P + I+ + L + R V + + + + + D+
Sbjct: 58 VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERR------AIVEEHIALVGLTEAADKR 111
Query: 465 VVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524
LSGG QRVA+ L + L+DEP LD+ R + + + + T +V
Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171
Query: 525 EHDFIMATYLADRVIVYEGQP 545
HD A L+DRV++ P
Sbjct: 172 THDVDEALLLSDRVVMLTNGP 192
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 6e-09
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 17/190 (8%)
Query: 371 FTDSQIIVMLGENGTGKTTFIRML-------AG--LLKPDSVEDSDVEIPEFNVSYKPQK 421
F ++ ++G NG+GK+T ++ML G LL +E + V+Y PQ+
Sbjct: 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQ 93
Query: 422 ISPKFQSTVRHLL-------HQKI-RDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGEL 473
+ TVR L+ H + R + V + + + ++ L + V +LSGGE
Sbjct: 94 LPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGER 153
Query: 474 QRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATY 533
QR + + + + + L+DEP++ LD ++ ++ R T V HD MA
Sbjct: 154 QRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAAR 213
Query: 534 LADRVIVYEG 543
D ++ G
Sbjct: 214 YCDYLVALRG 223
|
Length = 265 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-09
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 41/214 (19%)
Query: 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFN 414
K G L ++ E +++ ++G +G+GKTT +R + L +P++ + D+ I +
Sbjct: 12 KFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITI-DTA 70
Query: 415 VSYKPQKISPKFQSTVRHLLHQ-----KIRDSYTHPQFVSDVMK-PLLIEQLMDQEVV-- 466
S Q + +R L + + + H + ++++ P++++ +E
Sbjct: 71 RSLSQQ------KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR 124
Query: 467 -------------------NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAA 507
LSGG+ QRVA+ L ++ L DEP++ LD E +
Sbjct: 125 ARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVG 181
Query: 508 KVIK--RFILHAKKTAFVVEHDFIMATYLADRVI 539
+V+ R + K+T +V H+ A +ADR I
Sbjct: 182 EVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAI 215
|
Length = 250 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--NNPPDWQEILTYFRGSELQ----- 153
PG+ + ++G +G GKST L LAG L P G + P E++
Sbjct: 359 PPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSS-----LDQDEVRRRVSV 413
Query: 154 -----NYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLD--L 206
+ F + +NL + +P D + L ER AD L L
Sbjct: 414 CAQDAHLFDTTVRENL-RLARPDATDE-------ELWAAL----ERVGLADWLRALPDGL 461
Query: 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
+ V+ LSGGE QR A+A + +A I + DEP+ +LD + A +++ LL
Sbjct: 462 DTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAE---TADELLEDLLAAL 518
Query: 267 S--YVIVVEHDL 276
S V+++ H L
Sbjct: 519 SGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 8e-09
Identities = 62/218 (28%), Positives = 92/218 (42%), Gaps = 34/218 (15%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV------EIPEF 413
L V EGE I V++G +G+GK+T +R+L L++P V+ D+ E+ E
Sbjct: 49 LDVEEGE-----IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 414 NVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMK----PLLIEQL--------M 461
+ +KIS FQS L H+ + ++ V V K +E L
Sbjct: 104 ----RRKKISMVFQS-FALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA 158
Query: 462 DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521
D+ LSGG QRV L L DI L+DE + LD R + KKT
Sbjct: 159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTI 218
Query: 522 FVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559
+ HD A + DR+ + + V P+ +L
Sbjct: 219 VFITHDLDEALRIGDRIAIMKDGEIVQV--GTPEEILL 254
|
Length = 386 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 8e-09
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 14/197 (7%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD--SVEDSDVEIPEFNVSY 417
G LK + +F I ++G +G GK+T I+++ L+ P S+ V+I +V
Sbjct: 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVID 74
Query: 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVS-----DVMKPLLIEQL----MDQEVVNL 468
+KI FQ HL ++D+ + + DV L I L ++V NL
Sbjct: 75 LRRKIGMVFQQP--HLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNL 132
Query: 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528
SGGE QRV++ L ++ L+DEP++ LD + ++I + T + H+
Sbjct: 133 SGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM 192
Query: 529 IMATYLAD-RVIVYEGQ 544
A + D + +G
Sbjct: 193 EQAKRIGDYTAFLNKGI 209
|
Length = 241 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 8e-09
Identities = 55/205 (26%), Positives = 87/205 (42%), Gaps = 24/205 (11%)
Query: 84 THRYGPNT-FKLHRLPVP-RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQ 141
RY P+ L + + +PG+V+G+VG +G GKST K++ P GR D
Sbjct: 7 RFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV--LVDGH 64
Query: 142 EI----LTYFR---GSELQN--YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKD 192
++ + R G LQ F R + DN+ A+ P V +
Sbjct: 65 DLALADPAWLRRQVGVVLQENVLFNRSIRDNI-ALADPGMSME-------RVIEAAKLAG 116
Query: 193 ERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252
D ++L + ++ LSGG+ QR AIA + N I +FDE +S LD +
Sbjct: 117 AHDFISEL--PEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 253 LKAAQVVRSLLRPNSYVIVVEHDLS 277
+ + + VI++ H LS
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 9e-09
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 33/172 (19%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQN------ 154
+PGQ + +VG G GKST + +L P GR D +I T R S +N
Sbjct: 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL--IDGTDIRTVTRASLRRNIAVVFQ 416
Query: 155 ---YFTRILEDNLKAIIKPQYVD-HIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI 210
F R +EDN++ + +P D + A + Q D + +
Sbjct: 417 DAGLFNRSIEDNIR-VGRPDATDEEMRAAAER--AQAHDFIERKPDG------------Y 461
Query: 211 DRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV--KQRLKAA 256
D VG+ LSGGE QR AIA +++ I + DE +S LDV + ++KAA
Sbjct: 462 DTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAA 513
|
Length = 588 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 9e-09
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 25/200 (12%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSEL------QNYF 156
G+VL LVG +G GKS + G L P L + + EI G L +
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSG-----EI--LLDGRPLLPLSIRGRHI 64
Query: 157 TRILEDNLKAI-----IKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL-DLNQVI 210
I+++ A + ++ + G++ Q ++A L D +V+
Sbjct: 65 ATIMQNPRTAFNPLFTMGNHAIETLRSL-----GKLSKQARALILEALEAVGLPDPEEVL 119
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPNSYV 269
+ LSGG LQR IA+ + + DEP++ LDV + + +++R L + +
Sbjct: 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGI 179
Query: 270 IVVEHDLSVLDYLSDFICCL 289
+++ HDL V+ ++D + +
Sbjct: 180 LLITHDLGVVARIADEVAVM 199
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 45/180 (25%), Positives = 74/180 (41%), Gaps = 14/180 (7%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYKPQKISPKFQSTVRHLL 434
I ++G NG GK+T R G+LKP S V I + N+ + + FQ+ +
Sbjct: 33 IAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIF 92
Query: 435 HQKIR------------DSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCL 482
+ D T VS + L +E+L D+ +LSGGE +RVA+ +
Sbjct: 93 SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI 152
Query: 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542
+ ++DEP+A LD + + T H + +AD + V +
Sbjct: 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMD 212
|
Length = 277 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-08
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 26/184 (14%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--------NNPPDWQEILTYFRGSELQN 154
G+++ ++G +G GKST L ++AG ++P G P + + F+ + L
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFA 83
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV 214
+ T + N+ + P G L+ + + + + + +DR
Sbjct: 84 HLT--VRQNIGLGLHP--------------GLKLNAEQQEKVVDAAQQ-VGIADYLDRLP 126
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY-VIVVE 273
LSGG+ QR A+A V+ I + DEP S LD R + +V+ L +++V
Sbjct: 127 EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT 186
Query: 274 HDLS 277
H LS
Sbjct: 187 HHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 32/193 (16%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPDWQEILTYFRGSELQNYFTR 158
PG+ + L+G +G GKST L+ L G ++P G + +I +G L+ +
Sbjct: 25 NPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDG----TDINKL-KGKALRQLRRQ 79
Query: 159 I----LEDNLKAIIKPQYVDHIPKAVQGNVGQV--------LDQKDERDMKADLCTDLDL 206
I + NL I+ V + + G +G+ L K+E+ + L
Sbjct: 80 IGMIFQQFNL---IERLSV--LENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL 134
Query: 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
+ LSGG+ QR AIA +Q ++ + DEP + LD +++ V LL+
Sbjct: 135 LDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDP----ASSRQVMDLLKR- 189
Query: 267 SYVIVVEHDLSVL 279
I E ++V+
Sbjct: 190 ---INREEGITVI 199
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 52/204 (25%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN---------NPPDWQEILTY----- 146
RPG+ + ++G G GKST LK+L G +P G +P D + + Y
Sbjct: 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDP 548
Query: 147 --FRGSELQNYFTRILEDNLKAIIKPQYVDH-IPKAV-QGNVGQVLDQKDERDMKADLCT 202
F G+ L DN+ A+ P D I +A V + + + +
Sbjct: 549 RLFYGT---------LRDNI-ALGAPYADDEEILRAAELAGVTEFVRRHPD--------- 589
Query: 203 DLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD------VKQRLKAA 256
LD+ Q+ +R LSGG+ Q A+A +++ I + DEP+S +D K RLK
Sbjct: 590 GLDM-QIGERGRS-LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRW 647
Query: 257 QVVRSLLRPNSYVIVVEHDLSVLD 280
++L ++V H S+LD
Sbjct: 648 LAGKTL-------VLVTHRTSLLD 664
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 19/220 (8%)
Query: 81 KDTTHRYGPNTFKLHR--LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP 138
+D YG L L +P G++ L+G +G GKST L++L G P
Sbjct: 4 RDLNVYYGDKHA-LKDISLDIP-KGEITALIGPSGCGKSTLLRLLNRLNDLIPGA----P 57
Query: 139 DWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNV------GQVLDQKD 192
D E+L G ++ + +LE + + Q + P ++ NV + +++
Sbjct: 58 DEGEVL--LDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEE 115
Query: 193 ERDMKADLCTDLDL-NQVIDR-NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK 250
+ + L ++V DR + LSGG+ QR +A E+ + DEP+S LD
Sbjct: 116 LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175
Query: 251 QRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290
K +++ L + + +++V H++ ++D L
Sbjct: 176 STAKIEELIAELKKEYT-IVIVTHNMQQAARVADRTAFLL 214
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 61/226 (26%)
Query: 361 NFKLKVVEGEFTDSQIIVML-GENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP 419
+F+LK +GE I+ + GE+G+GK+ + + GLL + I + +
Sbjct: 25 SFELK--KGE------ILGIVGESGSGKSVLAKAIMGLLPKPNAR-----IVGGEILFDG 71
Query: 420 Q---KISPK-------------FQS---------TVRHLLHQKIRDSYTHPQFVSDVMKP 454
+ +S K FQ T+ + + +R H + +S
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR---LHGKGLSKKEAK 128
Query: 455 LLIEQLMDQ-------EVVN-----LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQ 502
+L++ + LSGG QRV + + L + + DEP+ LD
Sbjct: 129 ERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDV-- 186
Query: 503 RIVAAKVIKRF--ILHAKKTAFV-VEHDFIMATYLADRVIV-YEGQ 544
V A+++ + K TA + + HD + +ADRV V Y G+
Sbjct: 187 -TVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGR 231
|
Length = 316 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 1e-08
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 24/183 (13%)
Query: 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPE 412
+ + L V GE I+ +LG NG GKTT M+ G++ D+ ++D D+ +
Sbjct: 17 RVVEDVSLTVNSGE-----IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP 71
Query: 413 FN------VSYKPQKISPKFQSTVRHLLHQ--KIRDSYTHPQF---VSDVMKPLLIEQLM 461
+ + Y PQ+ S + +V L +IRD + Q +++M+ IE L
Sbjct: 72 LHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLR 131
Query: 462 DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521
D +LSGGE +RV + L L+DEP A +D ++ IKR I H + +
Sbjct: 132 DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDP----ISVIDIKRIIEHLRDSG 187
Query: 522 FVV 524
V
Sbjct: 188 LGV 190
|
Length = 241 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 63/196 (32%), Positives = 90/196 (45%), Gaps = 23/196 (11%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
R GQV L+G NG GKST LKIL+G N PD IL G E++ T
Sbjct: 28 RAGQVHALMGENGAGKSTLLKILSG---------NYQPDAGSIL--IDGQEMRFASTTAA 76
Query: 161 EDNLKAIIKPQYVDHIPK-AVQGNV--GQVLDQK----DERDMKADLCTDLD-LNQVIDR 212
AII Q + +P+ V N+ GQ L K + R + + L+ L ID
Sbjct: 77 LAAGVAIIY-QELHLVPEMTVAENLYLGQ-LPHKGGIVNRRLLNYEAREQLEHLGVDIDP 134
Query: 213 N--VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
+ + LS G+ Q IA +NA + FDEP+S L ++ + +V+R L ++
Sbjct: 135 DTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVIL 194
Query: 271 VVEHDLSVLDYLSDFI 286
V H + + L D I
Sbjct: 195 YVSHRMEEIFALCDAI 210
|
Length = 501 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 47/179 (26%), Positives = 71/179 (39%), Gaps = 45/179 (25%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
PG+ L ++G +G GKST +++ G L+P GR +
Sbjct: 26 EPGESLAIIGPSGSGKSTLARLILGLLRPTSGR-------------------------VR 60
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220
D A I P + +VG + Q DE + I N+ LSGG
Sbjct: 61 LDG--ADISQWD----PNELGDHVGYLP-QDDEL-----------FSGSIAENI--LSGG 100
Query: 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279
+ QR +A N I + DEP+S+LDV+ Q + +L + IV+ H L
Sbjct: 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL 159
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 59/197 (29%), Positives = 87/197 (44%), Gaps = 22/197 (11%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKP 419
L V E D + + ++G G+GK+T I+ L GLLKP S ++ D+ + +S
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 420 QKISPKFQSTVRHLLHQKI-RDSYTHPQ-----------FVSDVMK--PLLIEQLMDQEV 465
+K+ FQ L + I +D P V M L E D+
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP 142
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK--TAFV 523
LSGG+ +RVA+ + I ++DEP+A LD + R IK LH + T +
Sbjct: 143 FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKE--LHKEYNMTIIL 200
Query: 524 VEHDFIMATYLADRVIV 540
V H LADR+IV
Sbjct: 201 VSHSMEDVAKLADRIIV 217
|
Length = 287 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 30/190 (15%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
G+++ +VG++G GKST L +L G P G F G L L
Sbjct: 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE-----------VLFNGQSLSK-----L 72
Query: 161 EDNLKAIIKPQYVDHIPK--------AVQGNVGQVL-----DQKDERDMKADLCTDLDLN 207
N +A ++ + + I + NV L K+ ++ ++ + L
Sbjct: 73 SSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE 132
Query: 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-N 266
I+ +LSGGE QR AIA V + + DEP+ LD ++ L R N
Sbjct: 133 HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN 192
Query: 267 SYVIVVEHDL 276
+ +VV HDL
Sbjct: 193 TSFLVVTHDL 202
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-08
Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 43/174 (24%)
Query: 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQST 429
F + + ++ G NG+GK+T + + + +
Sbjct: 17 TFGEGSLTIITGPNGSGKSTILDAIG-----------------LALGGAQSATRRRSGVK 59
Query: 430 VRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG----KP 485
V+ V LI + LSGGE + AL L L KP
Sbjct: 60 AGC--------------IVAAV-SAELI-----FTRLQLSGGEKELSALALILALASLKP 99
Query: 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 539
+Y++DE LD A+ I ++ V+ H +A LAD++I
Sbjct: 100 RPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAE-LADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 70/213 (32%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPDWQ----EI----------L 144
R G+ + ++G G GKST LK+LAG KP G + Q ++ +
Sbjct: 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDV 87
Query: 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA------ 198
T F G+ L DN+ + D DER ++A
Sbjct: 88 TLFYGT---------LRDNI--TLGAPLAD-----------------DERILRAAELAGV 119
Query: 199 -DLCTD----LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD----- 248
D LDL Q+ +R G LSGG+ Q A+A + + I + DEP+S +D
Sbjct: 120 TDFVNKHPNGLDL-QIGERGRG-LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177
Query: 249 -VKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLD 280
+K+RL+ LL + +I++ H S+LD
Sbjct: 178 RLKERLRQ------LLGDKT-LIIITHRPSLLD 203
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 32/218 (14%)
Query: 70 IQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKP 129
I++ NL +D Y N H + G+ L ++G NG GKST ++++ G L+
Sbjct: 5 IEVKNLTFKYKEDQEK-YTLNDVSFH----VKQGEWLSIIGHNGSGKSTTVRLIDGLLEA 59
Query: 130 NLG-------RFNNPPDW---QEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179
G W +I F+ + Q + +ED++ ++ + + H +
Sbjct: 60 ESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQ-FVGATVEDDVAFGLENKGIPH--EE 116
Query: 180 VQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239
++ V + L+ +D K +R LSGG+ QR AIA +I +
Sbjct: 117 MKERVNEALELVGMQDFK-------------EREPARLSGGQKQRVAIAGAVAMRPKIII 163
Query: 240 FDEPSSYLDVKQRLKAAQVVRSLLRPNSY-VIVVEHDL 276
DE +S LD + RL+ + ++ + VI + HDL
Sbjct: 164 LDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL 201
|
Length = 279 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 28/202 (13%)
Query: 82 DTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF------- 134
YG L + G++ +VG +G GKST L ++AG P GR
Sbjct: 5 KIRFSYGEQPMHFD-LTFAQ-GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV 62
Query: 135 -NNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDE 193
PP + + F+ + L + T +E N+ + P G L +D
Sbjct: 63 TAAPPADRPVSMLFQENNLFAHLT--VEQNVGLGLSP--------------GLKLTAEDR 106
Query: 194 RDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRL 253
+ ++ L + L + R G+LSGGE QR A+A V V++ + + DEP + LD R
Sbjct: 107 QAIEVAL-ARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165
Query: 254 KAAQVVRSLLRPNSY-VIVVEH 274
+ +V L V++V H
Sbjct: 166 EMLDLVLDLHAETKMTVLMVTH 187
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 62/225 (27%), Positives = 93/225 (41%), Gaps = 49/225 (21%)
Query: 97 LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNNPPDWQEILTYFRGSELQN 154
L VPR G++L ++G +G GKST L+++ G L+P+ G + Q EL
Sbjct: 29 LDVPR-GEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ-----LSEEELYE 82
Query: 155 YFTRI--------LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDE--RDMKADLCTDL 204
R+ L +L V NV L + + + +L +
Sbjct: 83 IRKRMGVLFQQGALFSSL--------------TVFENVAFPLREHTKLPESLIREL-VLM 127
Query: 205 DLNQV------IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV 258
L V D +LSGG +R A+A + E+ DEP+S LD +A V
Sbjct: 128 KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP----ISAGV 183
Query: 259 VRSLLRP-----NSYVIVVEHDLSVLDYLSDFICCLY-GKPGAYG 297
+ L+R VI+V HDL L ++D + L GK A G
Sbjct: 184 IDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228
|
Length = 263 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 28/183 (15%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEI---------PEFNVSYKPQK 421
+I +LG NG GKTT IRM+ G++ PDS + ++I PE Y K
Sbjct: 27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMK 86
Query: 422 I--SPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALC 479
+ + + ++ L ++ R + + ++ L + + ++ V LS G Q+V
Sbjct: 87 VIDQLVYLAQLKGLKKEEARRR------IDEWLERLELSEYANKRVEELSKGNQQKVQFI 140
Query: 480 LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK---KTAFVVEHDFIMATYLAD 536
+ ++ ++DEP + LD V +++K I KT + H + L D
Sbjct: 141 AAVIHDPELLILDEPFSGLDP----VNVELLKDVIRELARAGKTVILSTHQMELVEELCD 196
Query: 537 RVI 539
RV+
Sbjct: 197 RVL 199
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 8/134 (5%)
Query: 376 IIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEF------NVSYKPQKISPKFQ 427
+ + G NG GKTT +R+LAGLL+PDS V + + E N+ Y K +
Sbjct: 28 ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPE 87
Query: 428 STVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD 487
+ LH + + D + + + D LS G+ +R+AL A
Sbjct: 88 LSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP 147
Query: 488 IYLIDEPSAYLDSE 501
++++DEP+ LD
Sbjct: 148 LWILDEPTTALDKA 161
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 33/217 (15%)
Query: 350 YKYPTMVKTQG--NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD 407
Y T ++ +G N ++ EG F + ++G G+GK+T ++ LLKP S
Sbjct: 12 YSPGTPMEKKGLDNISFELEEGSF-----VALVGHTGSGKSTLMQHFNALLKPSS---GT 63
Query: 408 VEIPEFNVSYKP---------QKISPKFQSTVRHLLHQKI-------------RDSYTHP 445
+ I ++++ + +K+S FQ L + +
Sbjct: 64 ITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE 123
Query: 446 QFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIV 505
+ + + K L E L+ + LSGG+++RVA+ + +I +DEP+A LD E R
Sbjct: 124 KALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKE 183
Query: 506 AAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542
++ K + A T +V H+ AD V+V E
Sbjct: 184 MMQLFKDY-QKAGHTVILVTHNMDDVAEYADDVLVLE 219
|
Length = 287 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 57/209 (27%), Positives = 83/209 (39%), Gaps = 48/209 (22%)
Query: 348 ARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP------- 400
YP L + GE + +LG +G+GK+T + LAGLL P
Sbjct: 340 LSAGYPGAPPVLDGVSLDLPPGER-----VAILGPSGSGKSTLLATLAGLLDPLQGEVTL 394
Query: 401 DSVEDSDVEIPEFN--VSYKPQKISPKFQSTVRHLLHQKIRDS--YTHPQFVSD--VMKP 454
D V S ++ E VS Q HL +R++ P +D +
Sbjct: 395 DGVPVSSLDQDEVRRRVSVCAQDA---------HLFDTTVRENLRLARPD-ATDEELWAA 444
Query: 455 L-------LIEQLMD--QEVVN-----LSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500
L + L D V+ LSGGE QR+AL L A I L+DEP+ +LD+
Sbjct: 445 LERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDA 504
Query: 501 EQRIVAAKVIKRFILHA--KKTAFVVEHD 527
E A + +L A +T ++ H
Sbjct: 505 E----TADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 46/214 (21%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAG--KLKPNLGR--FNN------PPD----------W 140
+ G+V ++G NG GKST + G K + G F+ PD +
Sbjct: 28 KEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAF 87
Query: 141 QEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADL 200
Q + G ++ L+A + A +G G + + E KA+L
Sbjct: 88 QYPVE-IPGVTNSDF--------LRAAMN---------ARRGARGILPEFIKELKEKAEL 129
Query: 201 CTDLDLN-QVIDRNVGD-LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA-AQ 257
L L+ + ++R V + SGGE +R I + + ++ + DEP S LD+ LK A+
Sbjct: 130 ---LGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI-DALKIVAE 185
Query: 258 VVRSLLRPNSYVIVVEHDLSVLDYLS-DFICCLY 290
+ +L V+++ H +LDY+ D + LY
Sbjct: 186 GINALREEGRGVLIITHYQRLLDYIKPDKVHVLY 219
|
Length = 251 |
| >gnl|CDD|234472 TIGR04105, FeFe_hydrog_B1, [FeFe] hydrogenase, group B1/B3 | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 9 AIVSSDRCKPKKCRQECKKSCP---VVKTGKLCIEVTPA-------AKIAFISEELCIGC 58
A + ++C +C + CKK+CP +V+ + C + P A I + CI C
Sbjct: 137 AYIDQEKCI--ECGK-CKKACPYNAIVEIERPCEKACPVGAISSDENGRAVIDYDKCISC 193
Query: 59 GICVKKCPFEAI----QIINLPKDLDKD 82
G C+ CPF AI QI+ + K L
Sbjct: 194 GACMVACPFGAISDKSQIVQVIKALKSG 221
|
See PMID:20395274 for descriptions of different groups. Length = 462 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 2e-08
Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 13/176 (7%)
Query: 379 MLGENGTGKTTFIRMLAGLLKPD--------SVEDSDVEIPEFNVSYKPQKISPKFQSTV 430
+LG NG GK+T RML G++ PD S + + PQ + + TV
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94
Query: 431 RHLLHQKIRDSYTHPQFVSDVMKPLL----IEQLMDQEVVNLSGGELQRVALCLCLGKPA 486
R L R + + V+ LL +E D V LSGG +R+ L L
Sbjct: 95 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDP 154
Query: 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542
+ ++DEP+ LD R + + + R +L KT + H A L DR+ V E
Sbjct: 155 QLLILDEPTTGLDPHARHLIWERL-RSLLARGKTILLTTHFMEEAERLCDRLCVLE 209
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 34/157 (21%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPDWQEILTY--FRGSEL---- 152
+ G+++GL+G NG GK+T ++ G +KP+ G+ + Q+I + + L
Sbjct: 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG----QDITKLPMHKRARLGIGY 79
Query: 153 ----QNYFTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKAD-LCTDLDL 206
+ F ++ +E+N+ A+++ + + K ER+ K + L + +
Sbjct: 80 LPQEASIFRKLTVEENILAVLEIRGLS----------------KKEREEKLEELLEEFHI 123
Query: 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEP 243
+ LSGGE +R IA N + + DEP
Sbjct: 124 THLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 27/205 (13%)
Query: 363 KLKVVEG---EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFN--- 414
K KVV E +I+ +LG NG GKTT M+ GL++PDS + D +I +
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHK 75
Query: 415 -----VSYKPQKISPKFQSTVRH----LLHQKIRDSYTHPQ--FVSDVMKPLLIEQLMDQ 463
+ Y PQ+ S + TV +L + +D + + +++ I L D
Sbjct: 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDS 135
Query: 464 EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFV 523
+ +LSGGE +RV + L L+DEP A +D +A I+R I H K
Sbjct: 136 KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP----IAVIDIQRIIKHLKDRGIG 191
Query: 524 V---EHDFIMATYLADRV-IVYEGQ 544
V +H+ + DR I+ +G+
Sbjct: 192 VLITDHNVRETLDICDRAYIISDGK 216
|
Length = 243 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 34/210 (16%)
Query: 352 YPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIP 411
YP V + L + +GEF + + G +G GKTT +++L G L P V I
Sbjct: 11 YPGGVAALHDVSLHIRKGEF-----LFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIA 62
Query: 412 EFNVSYKP--------QKISPKFQSTVRHLLHQKI------------RDSYTHPQFVSDV 451
+V+ ++I FQ R L + + + + V
Sbjct: 63 GEDVNRLRGRQLPLLRRRIGVVFQD-FRLLPDRTVYENVALPLEVRGKKEREIQRRVGAA 121
Query: 452 MKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE--QRIVAAKV 509
++ + +E D LSGGE QRVA+ + + L DEP+ LD + +RI+ +
Sbjct: 122 LRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILD--L 179
Query: 510 IKRFILHAKKTAFVVEHDFIMATYLADRVI 539
+KR T V HD + +A RVI
Sbjct: 180 LKRLNKRG-TTVIVATHDLSLVDRVAHRVI 208
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 20/193 (10%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNN--PPDWQEILTYFRGSELQNYFTR 158
+ G++ G+VGT+G GK+T KI+AG L+P G N +W ++ G + + R
Sbjct: 308 KEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTK--PGPDGRGRAKR 365
Query: 159 ILEDNLKAIIKPQYVDHIPKAVQGNVGQV--LDQKDE-RDMKADLC------TDLDLNQV 209
+ I+ +Y + + V N+ + L+ DE MKA + + ++
Sbjct: 366 YI-----GILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEI 420
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQ-VVRSLLRPNSY 268
+D+ +LS GE R A+A V ++ I + DEP+ +D ++ ++++
Sbjct: 421 LDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQT 480
Query: 269 VIVVEHDLS-VLD 280
I+V HD+ VLD
Sbjct: 481 FIIVSHDMDFVLD 493
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 41/211 (19%)
Query: 378 VMLGENGTGKTTFIRMLAGLLKPD--SVEDSDVEI---PEFNVSYKPQKISPKFQS---- 428
V++G NG GKTT + ++ G +PD SV ++ PE ++ I KFQ
Sbjct: 32 VIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR--AGIGRKFQKPTVF 89
Query: 429 ---TVR--------------HLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGG 471
TV L ++ + +V++ + + D+ LS G
Sbjct: 90 ENLTVFENLELALPRDKSVFASLFFRLSA--EEKDRIEEVLETIGLADEADRLAGLLSHG 147
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD--FI 529
+ Q + + + L + + L+DEP A + E+ A+++K L K + VVEHD F+
Sbjct: 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS--LAGKHSVVVVEHDMEFV 205
Query: 530 MATYLADRVIV-YEGQ----PSVDCVANAPQ 555
+ +AD+V V ++G S+D V P+
Sbjct: 206 RS--IADKVTVLHQGSVLAEGSLDQVQADPR 234
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 3e-08
Identities = 60/202 (29%), Positives = 85/202 (42%), Gaps = 29/202 (14%)
Query: 86 RYGPNTFKLHRLPVP-RPGQVLGLVGTNGIGKSTALKILAGKLKPN--LGRFN-NPPDWQ 141
YG NT L L + G++L L+G +G GK+T L+ +AG +K GR D
Sbjct: 14 AYGANTV-LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT 72
Query: 142 EILTYFRGSEL--QNY--FTRI-LEDNLKAIIKPQYVDHIPKA-VQGNVGQVLDQKDERD 195
+ RG L QNY F + +EDN+ ++ Q +PKA + V L D
Sbjct: 73 HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGD 129
Query: 196 MKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA 255
A LSGG QR AIA ++ + DEP S LD R
Sbjct: 130 AAA-------------HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176
Query: 256 AQVVRSLLR--PNSYVIVVEHD 275
+ + +L P ++ V HD
Sbjct: 177 REEIAALHEELPELTILCVTHD 198
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 60/222 (27%), Positives = 92/222 (41%), Gaps = 64/222 (28%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
L + +GE I+ ++G +G+GK+T + +L GL P S +V ++S
Sbjct: 23 GVSLSIGKGE-----IVAIVGSSGSGKSTLLHLLGGLDNPTS---GEVLFNGQSLS---- 70
Query: 421 KISPKFQSTVR-----------HLLHQKIRDSYTHPQF--VSDVMKPLLIEQLMDQEVVN 467
K+S ++ +R HLL P F + +V PLLI + +E
Sbjct: 71 KLSSNERAKLRNKKLGFIYQFHHLL----------PDFTALENVAMPLLIGKKSVKEAKE 120
Query: 468 ---------------------LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVA 506
LSGGE QRVA+ L + L DEP+ LD+
Sbjct: 121 RAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN---- 176
Query: 507 AKVIKRFILH---AKKTAF-VVEHDFIMATYLADRVIVYEGQ 544
AK+I +L T+F VV HD +A L + + +GQ
Sbjct: 177 AKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 52/232 (22%), Positives = 85/232 (36%), Gaps = 58/232 (25%)
Query: 91 TFKLH-----RLPV-------PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNN 136
TF LH RLPV G+ + L G +G GKST LK L P+ GR +
Sbjct: 10 TFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRH 69
Query: 137 PPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDE 193
W ++ P+ V + + G V Q L +
Sbjct: 70 EGAWVDLAQ----------------------ASPREVLEVRRKTIGYVSQFLRVIPRVSA 107
Query: 194 RDMKADLCTDLDLNQVIDRN-VGDL------------------SGGELQRFAIAVVAVQN 234
++ A+ + + + R +L SGGE QR IA + +
Sbjct: 108 LEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIAD 167
Query: 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFI 286
I + DEP++ LD R +++ + +I + HD V + ++D +
Sbjct: 168 YPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRV 219
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 62/186 (33%), Positives = 85/186 (45%), Gaps = 25/186 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY----FR---GSELQ 153
PG+ + +VG +G GKST L++L G P G D Q++ R G LQ
Sbjct: 477 EPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY--DGQDLAGLDVQAVRRQLGVVLQ 534
Query: 154 N--YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVID 211
N + + +N+ A P +D +A + G L + D R M + T VI
Sbjct: 535 NGRLMSGSIFENI-AGGAPLTLDEAWEAAR-MAG--LAE-DIRAMPMGMHT------VIS 583
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
G LSGG+ QR IA V+ I +FDE +S LD R +A V SL R IV
Sbjct: 584 EGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD--NRTQAI-VSESLERLKVTRIV 640
Query: 272 VEHDLS 277
+ H LS
Sbjct: 641 IAHRLS 646
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 35/224 (15%)
Query: 362 FKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS------VEDSDVEIPEFNV 415
F L V GE + +LG +G GK+T + ++AG L P S +D P
Sbjct: 18 FDLTVERGE-----RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP---- 68
Query: 416 SYKPQKISPKFQST--VRHL---------LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQE 464
S +P +S FQ HL L+ ++ + + + + + + IE L+ +
Sbjct: 69 SRRP--VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARL 126
Query: 465 VVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524
LSGG+ QRVAL CL + I L+DEP + LD R ++ + + T +V
Sbjct: 127 PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMV 186
Query: 525 EHDFIMATYLADRV-------IVYEGQPSVDCVANAPQSLLTGM 561
H A +A R I ++G A S L G+
Sbjct: 187 SHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASALLGI 230
|
Length = 232 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-08
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 23/187 (12%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP---- 419
LK + +++ +LG NG GK+T + L GLL+P S V I + Y
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS---GAVLIDGEPLDYSRKGLL 64
Query: 420 ---QKISPKFQSTVRHLLHQKI-RDSYTHP-----------QFVSDVMKPLLIEQLMDQE 464
Q++ FQ L + +D P + V + + + L ++
Sbjct: 65 ERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP 124
Query: 465 VVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524
LSGGE +RVA+ + D+ L+DEP+A LD R +++R + T +
Sbjct: 125 THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR-LRAEGMTVVIS 183
Query: 525 EHDFIMA 531
HD +A
Sbjct: 184 THDVDLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 4e-08
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 53/163 (32%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKI-SPKFQSTVRHL 433
+ +V+ G NG+GKTT +R++AGLL P + + I P +L
Sbjct: 29 EALVLTGPNGSGKTTLLRLIAGLLPPAA----------GTIKLDGGDIDDPDVAEACHYL 78
Query: 434 LHQKIRDSYTHPQFVSDVMKPLL-----------------------IEQLMDQEVVNLSG 470
H+ + MKP L +E + + +L
Sbjct: 79 GHR-------------NAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPF 125
Query: 471 GEL-----QRVALCLCLGKPADIYLIDEPSAYLDSE-QRIVAA 507
G L +RVAL L I+++DEP+A LD+ + A
Sbjct: 126 GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 379 MLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPE--------FNVSYKPQ--KISPKFQS 428
+LG NG GK+T RM+ G+ PD+ + + + +P + PQ + +F
Sbjct: 72 LLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEF-- 129
Query: 429 TVRHLLHQKIRDSYTHPQFVSDVMKPLL----IEQLMDQEVVNLSGGELQRVALCLCLGK 484
TVR L R + + V+ LL +E D V +LSGG +R+ L L
Sbjct: 130 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN 189
Query: 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543
+ ++DEP+ LD R + + + R +L KT + H A L DR+ V E
Sbjct: 190 DPQLLILDEPTTGLDPHARHLIWERL-RSLLARGKTILLTTHFMEEAERLCDRLCVLEA 247
|
Length = 340 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 5e-08
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
LSGGE R A+A + ++N + + DEP+++LD++ + +L VI+V HD
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI---EALEEALKEYPGTVILVSHDR 127
Query: 277 SVLD 280
LD
Sbjct: 128 YFLD 131
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 5e-08
Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 40/198 (20%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNNPPDWQEILTYFRGSEL------ 152
G+ + L G +G GKST LK++ G+ +P G N L+ +G E+
Sbjct: 26 PKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHD-----LSRLKGREIPFLRRQ 80
Query: 153 -----QNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD--QKDERDMKADLCTDLD 205
Q++ R+L D + V NV L K R+++ + LD
Sbjct: 81 IGVVFQDF--RLLPD---------------RTVYENVALPLRVIGKPPREIRRRVSEVLD 123
Query: 206 LNQVIDR-NV--GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL 262
L + + LSGGE QR AIA V + + DEP+ LD + ++ +
Sbjct: 124 LVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183
Query: 263 LRPNSYVIVVEHDLSVLD 280
R + V++ HDL +++
Sbjct: 184 NRLGTTVLMATHDLELVN 201
|
Length = 223 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 5e-08
Identities = 61/261 (23%), Positives = 108/261 (41%), Gaps = 36/261 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR----------FNNPPDWQEIL-TYFRG 149
+ G+ +G++G NG GKST L G L+P G+ F+ ++++ F+
Sbjct: 26 KKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQN 85
Query: 150 SELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQV 209
E Q + R +E++L P+ + P ++ V + L ++ L +
Sbjct: 86 PETQ-FVGRTVEEDLA--FGPENLCLPPIEIRKRVDRAL-------------AEIGLEKY 129
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269
R+ LSGG+ Q A+A + E +FDE +S LD + + ++ L +
Sbjct: 130 RHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTI 189
Query: 270 IVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVP------TENLR 323
+ + H+L L I GK G P +V +++ G P ENL+
Sbjct: 190 VYITHNLEELHDADRIIVMDRGKIVLEGE---PENVLSDVSLQTLGLTPPSLIELAENLK 246
Query: 324 FRDESLTFRVAETPQESAEEI 344
+ + +P AEEI
Sbjct: 247 MHGVVIPWENTSSPSSFAEEI 267
|
Length = 274 |
| >gnl|CDD|217870 pfam04068, RLI, Possible Fer4-like domain in RNase L inhibitor, RLI | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 5e-08
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 6 TRIAIVSSDRCKPKKCRQ-ECKKSCPV--VKTGKL 37
R+AIV D+C PKKC +C + CPV V+TGK
Sbjct: 1 MRLAIVDFDQCDPKKCTGRKCARFCPVRLVRTGKK 35
|
Possible metal-binding domain in endoribonuclease RNase L inhibitor. Found at the N-terminal end of RNase L inhibitor proteins, adjacent to the 4Fe-4S binding domain, fer4, pfam00037. Also often found adjacent to the DUF367 domain pfam04034 in uncharacterized proteins. The RNase L system plays a major role in the anti-viral and anti-proliferative activities of interferons, and could possibly play a more general role in the regulation of RNA stability in mammalian cells. Inhibitory activity requires concentration-dependent association of RLI with RNase L. Length = 35 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 55/200 (27%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGR-----------------------FNNPP 138
G+ + +VG NG GKST K+L G L P G F NP
Sbjct: 32 EGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNP- 90
Query: 139 DWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV-QGNVGQVLDQKDERDMK 197
D Q F G+ +Q+ LE+ + + + V+ + +A+ Q + L+++ R
Sbjct: 91 DNQ-----FVGATVQDDVAFGLENI--GVPREEMVERVDQALRQVGMEDFLNREPHR--- 140
Query: 198 ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQ 257
LSGG+ QR AIA V +I + DE +S LD + R + +
Sbjct: 141 -------------------LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLE 181
Query: 258 VVRSLLRP-NSYVIVVEHDL 276
VR L V+ + HDL
Sbjct: 182 TVRQLKEQKGITVLSITHDL 201
|
Length = 279 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 6e-08
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 28/231 (12%)
Query: 334 AETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRM 393
E PQ + + IE K + KT + +K + +I V++G +G+GK+T +R+
Sbjct: 15 GEHPQRAFKYIEQ-GLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRL 73
Query: 394 LAGLLKP----------DSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYT 443
L L++P D + SD E+ E + +KI+ FQS + H + D+
Sbjct: 74 LNRLIEPTRGQVLIDGVDIAKISDAELREV----RRKKIAMVFQSFAL-MPHMTVLDNTA 128
Query: 444 HPQFVS------------DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491
++ D ++ + +E LSGG QRV L L DI L+
Sbjct: 129 FGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLM 188
Query: 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542
DE + LD R + + ++T + HD A + DR+ + +
Sbjct: 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQ 239
|
Length = 400 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (128), Expect = 8e-08
Identities = 54/226 (23%), Positives = 101/226 (44%), Gaps = 27/226 (11%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
+ L+V +G +T ++G G+GK+T ++ L GLL+P V D V
Sbjct: 24 DIDLEVKKGSYT-----ALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKE 78
Query: 417 YKP--QKISPKFQSTVRHLLHQKI-RDSYTHPQ-----------FVSDVMKPL-LIEQLM 461
KP +K+ FQ L + + +D PQ ++ ++ + L ++
Sbjct: 79 IKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW 138
Query: 462 DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521
++ LSGG+++RVA+ L ++ ++DEP+A LD + RI ++ + I + +T
Sbjct: 139 EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFES-IHQSGQTV 197
Query: 522 FVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLSH 567
+V H AD V + E + C P + ++ +H
Sbjct: 198 VLVTHLMDDVADYADYVYLLEKGHIISC--GTPSDVFQEVDFLKAH 241
|
Length = 288 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 8e-08
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 26/189 (13%)
Query: 99 VPRPGQVLGLVGTNGIGKSTALKILAG----------KLKPNLGRFNNPPDWQEILTYFR 148
V + G+ + L+G +G GKST L ILAG + L + + +E R
Sbjct: 32 VVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMD-----EEARAKLR 86
Query: 149 GSELQNYF-TRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLN 207
+ F + +L L A+ + +P ++G + R+ L L L
Sbjct: 87 AKHVGFVFQSFMLIPTLNALENVE----LPALLRGE-----SSRQSRNGAKALLEQLGLG 137
Query: 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-N 266
+ +D LSGGE QR A+A ++ DEP+ LD + K A ++ SL R
Sbjct: 138 KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG 197
Query: 267 SYVIVVEHD 275
+ +I+V HD
Sbjct: 198 TTLILVTHD 206
|
Length = 228 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 9e-08
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI- 159
PG+ + ++G +G GKST L+ + ++P+ G + +I T RG +L+ RI
Sbjct: 26 NPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL--EGTDI-TKLRGKKLRKLRRRIG 82
Query: 160 ---LEDNLKAIIKPQYVDHIPKAVQGNVG-----QVLDQ--KDERDMKA-DLCTDLDLNQ 208
NL I+ V + + G +G + L +E +A + L
Sbjct: 83 MIFQHYNL---IERLTV--LENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD 137
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY 268
+ LSGG+ QR AIA Q ++ + DEP + LD K + QV+ L R N
Sbjct: 138 KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKT---SKQVMDYLKRINKE 194
Query: 269 ----VIVVEHDLSV 278
VI+ H + +
Sbjct: 195 DGITVIINLHQVDL 208
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 48/213 (22%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRF---------NNPPDWQEILTYFRGSELQ 153
G+ LG+VG +G GKST + + G +K G +W+ + S++Q
Sbjct: 47 GETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR-----SDIQ 101
Query: 154 NYFTRILEDNLKA----------IIKP--QYVDHIPKAVQGNVGQVLDQKDERDMKADLC 201
I +D L + I +P Y + + +V D+ +K L
Sbjct: 102 ----MIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQ------EVKDRVKAMMLKVGL- 150
Query: 202 TDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV-- 259
L +I+R + SGG+ QR IA + ++ + DEP S LDV + AQVV
Sbjct: 151 ----LPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQ---AQVVNL 203
Query: 260 -RSLLRPNSY-VIVVEHDLSVLDYLSDFICCLY 290
+ L R +I + HDL+V+ ++SD + +Y
Sbjct: 204 LQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236
|
Length = 331 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 1e-07
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 34/192 (17%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--------FNNPPDWQEILTYFRGSEL 152
+ G+V+ ++G +G GKST L+ + +P+ G ++ + E+ G
Sbjct: 24 KKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV-GMVF 82
Query: 153 QNY--FTR--ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQ 208
Q + F +LE+ A IK V + KA + +ER + +L + L
Sbjct: 83 QQFNLFPHLTVLENITLAPIK---VKGMSKA----------EAEERAL--ELLEKVGLAD 127
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD---VKQRLKAAQVVRSLLRP 265
D LSGG+ QR AIA N ++ +FDEP+S LD V + L V++ L
Sbjct: 128 KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL---DVMKDLAEE 184
Query: 266 NSYVIVVEHDLS 277
++VV H++
Sbjct: 185 GMTMVVVTHEMG 196
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 60/220 (27%), Positives = 98/220 (44%), Gaps = 29/220 (13%)
Query: 108 LVGTNGIGKSTALKILAGKLKPNLGRF--------NNPPDWQEILTYFRGSELQNYFTRI 159
L+G +G GK+T L++LAG +P+ G N PP + I F+ L + T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMT-- 58
Query: 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219
+E+N + + +P+A + R ++A L + L + DR LSG
Sbjct: 59 VEEN---VAFGLKMRKVPRA----------EIKPRVLEA-LRL-VQLEEFADRKPHQLSG 103
Query: 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSV 278
G+ QR A+A V +I + DEP S LD K R + ++++ + V HD
Sbjct: 104 GQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEE 163
Query: 279 LDYLSDFICCLYGKPGAYGVVTLPFSVREG-INIFLAGFV 317
+SD I + G + P + E N+F+A F+
Sbjct: 164 AMTMSDRIAIMRK--GKIAQIGTPEEIYEEPANLFVARFI 201
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 1e-07
Identities = 48/213 (22%), Positives = 78/213 (36%), Gaps = 55/213 (25%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNN------PPDWQEILTYFRG--- 149
G+++ L+G NG GK+T LK + G L P G RF+ PP E G
Sbjct: 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPH--ERAR--AGIGY 79
Query: 150 -SELQNYFTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL--D 205
E + F + +E+NL + + + +L
Sbjct: 80 VPEGRRIFPELTVEENLLL-----------------GAYARRRAKRKARLERVY-ELFPR 121
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYL---------DVKQRLKAA 256
L + + G LSGGE Q AIA + ++ + DEPS L + + L+
Sbjct: 122 LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 257 QVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289
V +++VE + ++D L
Sbjct: 182 GVT---------ILLVEQNARFALEIADRAYVL 205
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 61/213 (28%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKI- 422
L V +GE I +LGENG GK+T +++L GL +PDS E V K +I
Sbjct: 25 LSVKKGE-----IHALLGENGAGKSTLMKILFGLYQPDS--------GEIRVDGKEVRIK 71
Query: 423 SPKFQSTVRHLLHQKIRDSYTHPQFV------------SDVMKPLL---------IEQLM 461
SP R + I + H V + K L I++L
Sbjct: 72 SP------RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELS 125
Query: 462 DQ---------EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL---DSEQRIVAAKV 509
++ +V +LS GE QRV + L + A + ++DEP+A L ++++ +
Sbjct: 126 ERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRR 185
Query: 510 IKRFILHAKKTAFVVEHDF--IMATYLADRVIV 540
+ KT + H +MA +ADRV V
Sbjct: 186 LAA----EGKTIIFITHKLKEVMA--IADRVTV 212
|
Length = 501 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 34/199 (17%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--------FNNPPDWQEILTYFRGSELQ 153
G+++G +G NG GKST LK+L G L P G+ F ++ + G +LQ
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQ 108
Query: 154 NYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRN 213
++ D+L+ V + ++ D + + L LDL +
Sbjct: 109 LWWDLPALDSLE--------------VLKLIYEIPDDEFAERL-DFLTEILDLEGFLKWP 153
Query: 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR------LKAAQVVRSLLRPNS 267
V LS G+ R +A + ++ DEP+ LDV + LK R +
Sbjct: 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER-----QA 208
Query: 268 YVIVVEHDLSVLDYLSDFI 286
V++ H + L D +
Sbjct: 209 TVLLTTHIFDDIATLCDRV 227
|
Length = 325 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 35/165 (21%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--------NNPPDWQEILTYFRGSEL 152
+ G+ L+G +G GK+T L+++AG P G N PP + + T F
Sbjct: 24 KEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVF----- 78
Query: 153 QNYFTRILEDNLKAIIKPQYVDHIPKAVQGNV--GQVLDQKDERDMKADLCTDLDLNQV- 209
QNY L +L V N+ G L + + ++K + LDL Q+
Sbjct: 79 QNY---ALFPHL--------------TVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE 121
Query: 210 --IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252
+R LSGG+ QR AIA V ++ + DEP LD+K R
Sbjct: 122 GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 24/206 (11%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF-----NNPPDWQEILTYFRGSELQNYF 156
G++LGL+G NG GK+T L+ + G + P G + W+ I + E F
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDF 64
Query: 157 TRILEDNLKAIIKPQYVDHIPKAVQGNVGQV--LDQKDERDMKA--DLCTDLDLNQVIDR 212
P V H + G G + L + D A D + L ++ DR
Sbjct: 65 -------------PISVAHT--VMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR 109
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVV 272
VG+LSGG+ QR +A + + DEP + LD+ + ++ L + +++
Sbjct: 110 PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 273 EHDLSVLDYLSDFICCLYGKPGAYGV 298
HDL+ D + L G+ A G
Sbjct: 170 THDLAQAMATCDRVVLLNGRVIADGT 195
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 30/232 (12%)
Query: 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSD 407
Y YP N L + +GE+ I ++G+NG+GK+T L GLL+P V S
Sbjct: 9 YSYPDGTPALENINLVIKKGEY-----IGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG 63
Query: 408 VEIPEFNVSYKPQKI-SPKFQSTVRHLLHQKIRDSYTH-PQFVSDVMKPLLIEQLMDQEV 465
++ +F+ +K+ FQ+ + + + + P+ + + P+ I + +D+ +
Sbjct: 64 IDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL--CLPPIEIRKRVDRAL 121
Query: 466 V-------------NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512
LSGG+ Q VAL L + + DE ++ LD + I + IK+
Sbjct: 122 AEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKK 181
Query: 513 FILHAK-KTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL 563
LH K KT + H+ + + ADR+IV + V + P+++L+ ++L
Sbjct: 182 --LHEKGKTIVYITHN-LEELHDADRIIVMDRGKIV--LEGEPENVLSDVSL 228
|
Length = 274 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 57/215 (26%), Positives = 87/215 (40%), Gaps = 57/215 (26%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP------DWQEI----LTYFRGS 150
G+ + +VG +G GKST L++L RF + D Q+I L R
Sbjct: 25 PAGKKVAIVGPSGSGKSTILRLLF--------RFYDVSSGSILIDGQDIREVTLDSLR-- 74
Query: 151 ELQNYFTRILEDNLKAI-IKPQ----YVDHIPKAVQ-GNVGQVLDQKDERDMKADLCTDL 204
+AI + PQ + D I ++ G D DE ++A +
Sbjct: 75 --------------RAIGVVPQDTVLFNDTIGYNIRYGR----PDATDEEVIEAAKAAQI 116
Query: 205 D-----LNQVIDRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA 255
D VG+ LSGGE QR AIA ++N I + DE +S LD +
Sbjct: 117 HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176
Query: 256 AQVVRSLLRPNSYVIVVEHDLS-VLDYLSDFICCL 289
+R + + IV+ H LS +++ +D I L
Sbjct: 177 QAALRDVSK-GRTTIVIAHRLSTIVN--ADKIIVL 208
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 52/221 (23%), Positives = 88/221 (39%), Gaps = 45/221 (20%)
Query: 362 FKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQK 421
V GE + ++G +G+GK+T +R+L L + +++ +++ + + P +
Sbjct: 19 LNFSVAAGE-----KVALIGPSGSGKSTILRILMTL---EPIDEGQIQVEGEQLYHMPGR 70
Query: 422 ISPKFQSTVRHLL-----------------HQKIRDSYTHPQFVSDVMKPLLIE----QL 460
P + +HL H+ + D+ T + M E +L
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMEL 130
Query: 461 M---------DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK 511
+ D LSGG+ QRVA+ L + L DE ++ LD E VI+
Sbjct: 131 LDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIR 190
Query: 512 RFILHAKKTAFVVEHDFIMATYLADRV-------IVYEGQP 545
R T +V H+ A ADRV IV +G+P
Sbjct: 191 RLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 56/238 (23%), Positives = 97/238 (40%), Gaps = 61/238 (25%)
Query: 351 KYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI 410
K PT +K N +++ +GEF I ++G+ G+GKTTFI L LL PD+ +E
Sbjct: 15 KLPTELKALDNVSVEINQGEF-----IAIIGQTGSGKTTFIEHLNALLLPDTGT---IEW 66
Query: 411 PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPL----------LIEQL 460
K +K + + + + L+ QK R + + + ++ + + L EQ
Sbjct: 67 --IFKDEKNKKKTKEKEKVLEKLVIQKTR--FKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 461 MDQEVV------------------------------------NLSGGELQRVALCLCLGK 484
++++++ LSGG+ +RVAL L
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAM 182
Query: 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK-KTAFVVEHDFIMATYLADRVIVY 541
D + DEP+A LD + ++ L+ + KT +V HD R I +
Sbjct: 183 EPDFLVFDEPTAGLDPQGVKEILEIFDN--LNKQGKTIILVTHDLDNVLEWTKRTIFF 238
|
Length = 305 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 56/220 (25%), Positives = 87/220 (39%), Gaps = 43/220 (19%)
Query: 346 TYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405
++R + P G V GE +++ G+NG GKTT +R+LAGLL +S
Sbjct: 18 AFSRNEEPVF----GPLDFHVDAGE-----ALLVQGDNGAGKTTLLRVLAGLLHVES--- 65
Query: 406 SDVEIPEFNVSYKPQKISPKFQSTVRHL------------LHQKIRDSYTHPQFVSDVMK 453
++I + + +F + + HL LH + +
Sbjct: 66 GQIQIDGKTATRGDRS---RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPG--S 120
Query: 454 PLLIEQLMDQE---VVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE-----QRIV 505
L I L E V LS G+ +R+AL PA ++L+DEP A LD E R++
Sbjct: 121 ALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
Query: 506 AAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545
+A L A V H A + R++ E
Sbjct: 181 SAH------LRGGGAALVTTHGAYAAPPVRTRMLTLEAAA 214
|
Length = 214 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 61/229 (26%), Positives = 91/229 (39%), Gaps = 45/229 (19%)
Query: 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDV 408
+Y YP + K +GE ++ +LG NG GK+T G+LKP S E V
Sbjct: 8 KYSYPDGTEALKGINFKAEKGE-----MVALLGPNGAGKSTLFLHFNGILKPTSGE---V 59
Query: 409 EIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVN- 467
I + Y +K + + TV ++ Q D P DV L L +EV
Sbjct: 60 LIKGEPIKYD-KKSLLEVRKTV-GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR 117
Query: 468 --------------------LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAA 507
LSGG+ +RVA+ L +I ++DEP++ LD + A
Sbjct: 118 VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDP----MGA 173
Query: 508 KVIKRFILHAKK---TAFVVEHDFIMATYLADRV-------IVYEGQPS 546
I + + K T + HD + AD+V I+ EG P
Sbjct: 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPK 222
|
Length = 275 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 59/191 (30%), Positives = 82/191 (42%), Gaps = 34/191 (17%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
+PGQ + LVG +G GKST K++AG +P G EIL F G + +L
Sbjct: 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG---------EIL--FDGIPREEIPREVL 551
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADL---CTDLDLNQVIDRNVG-- 215
+++ VD +G V L D ADL C D ++ VI G
Sbjct: 552 ANSVA------MVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGY 605
Query: 216 ---------DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
+LSGG+ QR IA V+N I + DE +S LD + + +L R
Sbjct: 606 DAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEK---IIDDNLRRRG 662
Query: 267 SYVIVVEHDLS 277
I+V H LS
Sbjct: 663 CTCIIVAHRLS 673
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE---------DSD 407
+ G+ L V I + G +G GKT+ I ++GL +P D++
Sbjct: 8 QQLGDLCLTVNL-TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAE 66
Query: 408 VEIPEFNVSYKPQKISPKFQS-------TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQL 460
I + + ++I FQ VR L + S QF ++ L IE L
Sbjct: 67 KGI---CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMV-AQF-DKIVALLGIEPL 121
Query: 461 MDQEVVNLSGGELQRVAL--CLCLGKPADIYLIDEPSAYLD 499
+D+ +LSGGE QRVA+ L L P ++ L+DEP A LD
Sbjct: 122 LDRYPGSLSGGEKQRVAIGRAL-LTAP-ELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 39/201 (19%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYK 418
N K++ +++ + G G+GKT+ + ++ G L+P ++ S +S+
Sbjct: 57 NLKIE-------KGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------RISFS 103
Query: 419 PQKISPKFQSTVR-HLLHQKIRDSYTHP------QFVSDVMK-PLLIEQLMDQEVVNLSG 470
Q S T++ +++ D Y + Q D+ K P ++ + + LSG
Sbjct: 104 SQ-FSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG 162
Query: 471 GELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV---- 524
G+ R++L + K AD+YL+D P YLD +E+ I + V K L A KT +V
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCK---LMANKTRILVTSKM 219
Query: 525 EHDFIMATYLADRV-IVYEGQ 544
EH AD++ I++EG
Sbjct: 220 EH-----LKKADKILILHEGS 235
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 16/185 (8%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
+ GQ + +VG G GK+T + +L P +G+ D +I T R S L+ +
Sbjct: 359 KAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL--IDGIDINTVTRES-LRKSIATVF 415
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQV--IDRNVGD-- 216
+D + ++I G G ++ E KA D L + D VG+
Sbjct: 416 QD--AGLFNRSIRENIR---LGREGATDEEVYEA-AKAAAAHDFILKRSNGYDTLVGERG 469
Query: 217 --LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEH 274
LSGGE QR AIA ++NA I + DE +S LDV+ + + + LR N ++ H
Sbjct: 470 NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA-LRKNRTTFIIAH 528
Query: 275 DLSVL 279
LS +
Sbjct: 529 RLSTV 533
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 23/200 (11%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQ-EILTYFRGSELQNYFTRI 159
R G+++ L G NG GKST +K+L+G + P+ ++ EI F G ELQ R
Sbjct: 29 RAGEIVSLCGENGAGKSTLMKVLSG-VYPH-------GTYEGEI--IFEGEELQASNIRD 78
Query: 160 LEDNLKAIIKPQYVDHIPK-AVQGNV--------GQVLDQKDERDMKAD-LCTDLDLNQV 209
E AII Q + + + +V N+ G ++D D ++A L L L+
Sbjct: 79 TERAGIAIIH-QELALVKELSVLENIFLGNEITPGGIMDY-DAMYLRAQKLLAQLKLDIN 136
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269
VG+L G+ Q IA + A + + DEP++ L + ++R L
Sbjct: 137 PATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIAC 196
Query: 270 IVVEHDLSVLDYLSDFICCL 289
I + H L+ + +SD IC +
Sbjct: 197 IYISHKLNEVKAISDTICVI 216
|
Length = 506 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 58/240 (24%), Positives = 101/240 (42%), Gaps = 56/240 (23%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
+F +K EGE + ++GE+G GK+T R++ GL +P S E + ++ +
Sbjct: 33 SFSIK--EGE-----TLGLVGESGCGKSTLGRLILGLEEPTSGE----------ILFEGK 75
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVN-----LSGGELQR 475
I+ L ++ R+ V++ LL + + +E + LSGG+ QR
Sbjct: 76 DIT--------KLSKEERRE---------RVLE-LLEKVGLPEEFLYRYPHELSGGQRQR 117
Query: 476 VALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI-LHAKK--TAFVVEHDFIMAT 532
+ + L + + DEP + LD V A+++ L + T + HD +
Sbjct: 118 IGIARALALNPKLIVADEPVSALDV---SVQAQILNLLKDLQEELGLTYLFISHDLSVVR 174
Query: 533 YLADRVIV-YEGQP----SVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLD 587
Y++DR+ V Y G+ + V + P T LS DP R R L+
Sbjct: 175 YISDRIAVMYLGKIVEIGPTEEVFSNPLHPYT--KALLS---AVPVPDPRLRRKRRIPLE 229
|
Length = 268 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 34/176 (19%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLL 434
+ + + G NG+GKTT +R+LAGL P + V + + S R LL
Sbjct: 27 EALQVTGPNGSGKTTLLRILAGLSPPLAGR----------VLLNGGPLDFQRDSIARGLL 76
Query: 435 ---HQ---KIRDS-YTHPQFVSDVMKPLLIEQLMDQ---------EVVNLSGGELQRVAL 478
H K S + +F +E+ + + V LS G+ +RVAL
Sbjct: 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVAL 136
Query: 479 CLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL 534
L ++++DEP+ LD A+ + H + V ++ T+
Sbjct: 137 ARLLLSGRPLWILDEPTTALDKAG---VARFAEAMAGHCARGGMV-----VLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 46/215 (21%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKP-----------NLGRFNNPPDWQEILTYFRG- 149
PG +G++G NG GKST L+I+AG K +G P T R
Sbjct: 30 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKT-VREN 88
Query: 150 -----SELQNYFTRILE---------DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERD 195
+E+++ R E ++ A++ Q + + + LD+K E
Sbjct: 89 VEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQ--AELQEIIDAADAWDLDRKLEIA 146
Query: 196 MKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA 255
M A C D + V LSGGE +R A+ + + ++ + DEP+++LD
Sbjct: 147 MDALRCPPWDAD------VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD------- 193
Query: 256 AQVV----RSLLRPNSYVIVVEHDLSVLDYLSDFI 286
A+ V + L V+ V HD LD ++ +I
Sbjct: 194 AESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWI 228
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 35/208 (16%)
Query: 363 KLKVVEG---EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNV-- 415
K KVV G +I+ +LG NG GKTT M+ GL+KPDS + +I + +
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71
Query: 416 ------SYKPQKISPKFQSTVR---------HLLHQKIRDSYTHPQFVSDVMKPLLIEQL 460
Y PQ+ S + TV L +K R+ ++++ I L
Sbjct: 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKL-----EELLEEFHITHL 126
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKT 520
+ +LSGGE +RV + L L+DEP A +D +A + I++ I K
Sbjct: 127 RKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDP----IAVQDIQKIIKILKDR 182
Query: 521 AFVV---EHDFIMATYLADRV-IVYEGQ 544
V +H+ + DR I+YEG+
Sbjct: 183 GIGVLITDHNVRETLSITDRAYIIYEGK 210
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 55/198 (27%), Positives = 83/198 (41%), Gaps = 34/198 (17%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPDWQEILTYFRGSELQNY---- 155
G+++ +VG++G GKST L +L G P G FN P + L+ +EL+N
Sbjct: 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSK--LSSAAKAELRNQKLGF 91
Query: 156 ---FTRILED--NLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI 210
F +L D L+ + P + A +M A + L
Sbjct: 92 IYQFHHLLPDFTALENVAMPLLIGKKKPAEI--------NSRALEMLAAV----GLEHRA 139
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-----RP 265
+ +LSGGE QR AIA V N + + DEP+ LD + A + LL
Sbjct: 140 NHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD----ARNADSIFQLLGELNRLQ 195
Query: 266 NSYVIVVEHDLSVLDYLS 283
+ +VV HDL + +S
Sbjct: 196 GTAFLVVTHDLQLAKRMS 213
|
Length = 233 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 56/197 (28%), Positives = 82/197 (41%), Gaps = 32/197 (16%)
Query: 91 TFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGS 150
TF LH PG+V+ LVG +G GKST +L P Q +L G
Sbjct: 501 TFTLH------PGEVVALVGPSGSGKSTVAALLQ--------NLYQPTGGQVLLD---GV 543
Query: 151 ELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDM----KADLCTDL-- 204
L Y L + + Q +V+ N+ L + ++ KA D
Sbjct: 544 PLVQYDHHYLHR--QVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 205 DLNQVIDRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVR 260
+ D VG+ LSGG+ QR AIA V+ + + DE +S LD + + Q R
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDA-ECEQLLQESR 660
Query: 261 SLLRPNSYVIVVEHDLS 277
S R + V+++ H LS
Sbjct: 661 S--RASRTVLLIAHRLS 675
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-07
Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 52/235 (22%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS------------VEDSDVEIP 411
LK V + +I ++G +G+GK+TF+R + L KP V D D ++
Sbjct: 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80
Query: 412 EFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMK-PLLIEQLMDQEV----- 465
+ + + + + +H + ++H + +VM+ P+ + L QE
Sbjct: 81 VAD-KNQLRLLRTRLTMVFQHF------NLWSHMTVLENVMEAPIQVLGLSKQEARERAV 133
Query: 466 -----------------VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAK 508
V+LSGG+ QRV++ L ++ L DEP++ LD E +
Sbjct: 134 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR 193
Query: 509 VIKRFILHAKKTAFVVEHDFIMATYLADRVIVY-------EGQPSVDCVANAPQS 556
++++ + KT VV H+ A +++ VI EG P + + PQS
Sbjct: 194 IMQQ-LAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAP--EQLFGNPQS 245
|
Length = 257 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 32/219 (14%)
Query: 81 KDTTHRYGPNTFKLHRLPVPRP-GQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNP 137
++ + Y T L + + G+V ++G NG GKST + L G LKP+ GR F+
Sbjct: 9 EELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK 68
Query: 138 P-DW---------QEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ 186
P D+ + + F+ + Q + + +D + + +P+ V+ V
Sbjct: 69 PIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK----LPEDEVRKRVDN 124
Query: 187 VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
L + +K D+ LS G+ +R AIA V V ++ + DEP++
Sbjct: 125 ALKRTGIEHLK-------------DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAG 171
Query: 247 LDVKQRLKAAQVVRSLLRPNSYVIVV-EHDLSVLDYLSD 284
LD + +++ + + I++ HD+ ++ D
Sbjct: 172 LDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCD 210
|
Length = 283 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV-EIPEFNVSYKPQKISPK 425
F S I + G NG GK++ +RM+AG+++P S ++ ++ I + +Y + K
Sbjct: 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLK 82
Query: 426 FQSTVRHLLH--QKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG 483
+ TV L +I +S K + L+D++ +LS G + VA+ +
Sbjct: 83 LEMTVFENLKFWSEIYNSAETLYAAIHYFK---LHDLLDEKCYSLSSGMQKIVAIARLIA 139
Query: 484 KPADIYLIDEPSAYLDSEQR 503
+D++L+DE L E R
Sbjct: 140 CQSDLWLLDEVETNLSKENR 159
|
Length = 195 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 375 QIIVMLGENGTGKTTFIR------------MLAGLLKPDSVE----DSDVEIPEFNVSYK 418
++ +G +G GK+TF+R + G L D ++ D++V + V
Sbjct: 32 EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMV 91
Query: 419 PQKISPKFQSTVRHL-----LHQKIRDSYTHPQFVSDVMKPL-LIEQLMDQ---EVVNLS 469
QK +P +S ++ LH ++ + V + + L E+L D+ LS
Sbjct: 92 FQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELS 151
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK--TAFVVEHD 527
GG+ QR+ + + + L+DEP + LD VA VI+ I KK T VV H
Sbjct: 152 GGQQQRLCIARAIAVKPTMLLMDEPCSALDP----VATNVIENLIQELKKNFTIIVVTHS 207
Query: 528 FIMATYLADRVIVYEG-----QPSVDCVANAPQSLLT 559
A ++DRV ++ + + PQS T
Sbjct: 208 MKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKT 244
|
Length = 251 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 22/206 (10%)
Query: 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD--SVEDSD 407
++Y G LK + + +LG NG GK+T + L G+ P V+
Sbjct: 12 FRYK-----DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMG 66
Query: 408 VEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTH-PQ-----------FVSDVMKPL 455
E+ N + K+ FQ + + D P V + +K +
Sbjct: 67 REVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAV 126
Query: 456 LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515
+ D+ +LS G+ +RVA+ L D+ ++DEP AYLD + +++ R L
Sbjct: 127 RMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR--L 184
Query: 516 HAK-KTAFVVEHDFIMATYLADRVIV 540
H + KT V HD +A AD+VIV
Sbjct: 185 HNQGKTVIVATHDVDLAAEWADQVIV 210
|
Length = 274 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 56/211 (26%), Positives = 86/211 (40%), Gaps = 38/211 (18%)
Query: 81 KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNN-- 136
D YG + L VP G+++ ++G +G GKST L ++AG P G N
Sbjct: 5 DDVRFSYGHLPMRFD-LTVPA-GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVD 62
Query: 137 ----PPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD--- 189
PP + + F+ E+NL A H+ V N+G L
Sbjct: 63 HTASPPAERPVSMLFQ------------ENNLFA--------HL--TVAQNIGLGLSPGL 100
Query: 190 --QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYL 247
++R+ + L + R G+LSGG+ QR A+A V+ I + DEP S L
Sbjct: 101 KLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL 160
Query: 248 DVKQRLKAAQVVRSLLRPNSY-VIVVEHDLS 277
D R + +V L +++V H
Sbjct: 161 DPALRAEMLALVSQLCDERKMTLLMVTHHPE 191
|
Length = 231 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 3e-07
Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 46/190 (24%)
Query: 88 GPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAG------KLKPNLGRFN--NPPD 139
GP F L GQ + LVG +G GK++ L L G LK N +P
Sbjct: 367 GPLNFTL------PAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPES 420
Query: 140 WQEILTY-------FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKD 192
W++ L++ G+ L DN+ + P A + Q L+
Sbjct: 421 WRKHLSWVGQNPQLPHGT---------LRDNV-LLGNPD-------ASDEQLQQALENAW 463
Query: 193 ERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD---- 248
+ L LD + D+ G LS G+ QR A+A +Q ++ + DEP++ LD
Sbjct: 464 VSEFLPLLPQGLDT-PIGDQAAG-LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSE 521
Query: 249 --VKQRLKAA 256
V Q L AA
Sbjct: 522 QLVMQALNAA 531
|
Length = 588 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 59/184 (32%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKP-------DSVEDSDVEIPEF--NVSYKPQKISPKFQ 427
+ ++G +G+GK+T R++ GLL+P D + S + E +V Y PQ
Sbjct: 31 LAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDE---- 86
Query: 428 STVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCL-GKPA 486
L I ++ LSGG+ QR+ L L G P
Sbjct: 87 -----LFSGSIAENI-------------------------LSGGQRQRLGLARALYGNPR 116
Query: 487 DIYLIDEPSAYLDS--EQRIVAAKVIKRFILHAKK---TAFVVEHDFIMATY-LADRVIV 540
I ++DEP+++LD E+ + A I K T V+ H T ADR++V
Sbjct: 117 -ILVLDEPNSHLDVEGERALNQA------IAALKAAGATRIVIAHR--PETLASADRILV 167
Query: 541 YEGQ 544
E
Sbjct: 168 LEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 3e-07
Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 34/205 (16%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNN------------PPDWQEILTY 146
+ G L+G G GKST L+ L G L+P G + P +++
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDL 206
F+ E Q + +L+D PQ N G + ++ + A+ + L
Sbjct: 90 FQFPESQLFEETVLKD---VAFGPQ-----------NFG--IPKEKAEKIAAEKLEMVGL 133
Query: 207 NQVI-DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP 265
+++ +LSGG+++R AIA + E+ + DEP++ LD K R++ Q+ S+ +
Sbjct: 134 ADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS 193
Query: 266 NSYVIVVEHDLSVLDYLSDFICCLY 290
V++V H ++D ++D+ +Y
Sbjct: 194 GQTVVLVTH---LMDDVADYADYVY 215
|
Length = 288 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527
LSGG+ QRVAL L + L+DEP LD+ RI +I+ T +V HD
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Query: 528 FIMATYLADRVIVYE-GQPSVDCVANAP 554
A +ADRV++ E G+ +D + P
Sbjct: 194 VSEAVAMADRVLLIEEGKIGLDLTVDLP 221
|
Length = 257 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 3e-07
Identities = 48/190 (25%), Positives = 74/190 (38%), Gaps = 56/190 (29%)
Query: 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYK 418
+ L V+ +++ +LG +G+GK+T +R L+GL+ D S +E+
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIEL-------- 66
Query: 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSD---------VMKPLLIEQL--------- 460
+ Q R L + IR S + ++ V++ +LI L
Sbjct: 67 ---LGRTVQREGR--LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTC 121
Query: 461 ------------------------MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496
Q V LSGG+ QRVA+ L + A + L DEP A
Sbjct: 122 FSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIA 181
Query: 497 YLDSEQ-RIV 505
LD E RIV
Sbjct: 182 SLDPESARIV 191
|
Length = 262 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 26/189 (13%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPN----------LGRFNNPPDWQEILTYFRGSE 151
G+ + +VG +G GKST L +LAG P+ L + + ++ R
Sbjct: 35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLD-----EDARAALRARH 89
Query: 152 LQNYFTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI 210
+ F L NL A+ +P ++G D R L + L + +
Sbjct: 90 VGFVFQSFHLIPNLTALENVA----LPLELRGE-----SSADSRAGAKALLEAVGLGKRL 140
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYV 269
LSGGE QR A+A ++ DEP+ LD K A ++ +L R + +
Sbjct: 141 THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTL 200
Query: 270 IVVEHDLSV 278
++V HD +
Sbjct: 201 VLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 53/205 (25%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYK-- 418
+F V GE ++++LG G+G +T ++ LA + + E ++ Y
Sbjct: 25 DFSGVVKPGE-----MVLVLGRPGSGCSTLLKALANRTEGN-------VSVEGDIHYNGI 72
Query: 419 -PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDV-MKPLLIEQLMD--------QEVVNL 468
++ + K+ + Y + DV L + + +D + V +
Sbjct: 73 PYKEFAEKYPGEI----------IYVSEE---DVHFPTLTVRETLDFALRCKGNEFVRGI 119
Query: 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528
SGGE +RV++ L A + D + LDS + K I+ K T FV
Sbjct: 120 SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFV----- 174
Query: 529 IMATYLA--------DRVIV-YEGQ 544
+ Y A D+V+V YEG+
Sbjct: 175 --SLYQASDEIYDLFDKVLVLYEGR 197
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 42/206 (20%)
Query: 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPD----SVED----SDVEIPEFNVSYKPQKI 422
F ++I ++G +G+GK+T + GL+K V D E + +KI
Sbjct: 49 FEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKI 108
Query: 423 S---------------PKFQ---STVRH-------LLHQKIRDSYTHPQFVSDVMKPLLI 457
P++Q T+ L K ++ +F + M L
Sbjct: 109 KNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMG--LD 166
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
+ +++ LSGG+ +RVA+ L +I + DEP+A LD + + + IL A
Sbjct: 167 DSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPK----GEHEMMQLILDA 222
Query: 518 K---KTAFVVEHDFIMATYLADRVIV 540
K KT FV+ H +AD VIV
Sbjct: 223 KANNKTVFVITHTMEHVLEVADEVIV 248
|
Length = 320 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 30/200 (15%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK--------------PDSVEDSDVE 409
LK + ++++ ++G +G GK+TFI+ L +++ ++ V+
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 410 IPEF--NVSYKPQKISPKFQSTVRHLLH-QKIRDSYTHPQFVSDVMKPLLIEQLMD---- 462
+ E N+ QK +P QS ++ + +I + + V K L L D
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 463 ---QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK 519
+ ++LSGG+ QR+ + L D+ L+DEP++ LD V+ + I+ IL K+
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP----VSTRKIEELILKLKE 203
Query: 520 --TAFVVEHDFIMATYLADR 537
T +V H+ A ++D+
Sbjct: 204 KYTIVIVTHNMQQAARVSDQ 223
|
Length = 259 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 26/182 (14%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--------NNPPDWQEILTYFRGSELQN 154
G++ L+G +G GKST L++LAG +P G+ + PP + I F+ L
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFP 104
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV 214
+ T +E N+ +K D +PKA + ++ + + + R
Sbjct: 105 HMT--VEQNIAFGLKQ---DKLPKA------------EIASRVNEMLGLVHMQEFAKRKP 147
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAA-QVVRSLLRPNSYVIVVE 273
LSGG+ QR A+A + ++ + DEP LD K R + +VV L R ++V
Sbjct: 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVT 207
Query: 274 HD 275
HD
Sbjct: 208 HD 209
|
Length = 377 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 4e-07
Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 30/191 (15%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGR---------FNNPPDWQEILTYFR--GSE 151
G+ L L+G +G GKS+ L++L P G F+ P + I R G
Sbjct: 28 GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMV 87
Query: 152 LQNY----FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLN 207
Q Y + E+ ++A P V + K DQ R K L L L
Sbjct: 88 FQQYNLWPHLTVQENLIEA---PCRVLGLSK----------DQALARAEK--LLKRLRLK 132
Query: 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS 267
DR LSGG+ QR AIA + ++ +FDEP++ LD + + +++ L
Sbjct: 133 PYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGI 192
Query: 268 YVIVVEHDLSV 278
++V H++ V
Sbjct: 193 TQVIVTHEVEV 203
|
Length = 242 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 21/156 (13%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPE---------FN 414
L V Q++ +LG +G+GKTT + ++G ++ +
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82
Query: 415 VSYKPQ--KISPKFQSTVRHLLH--QKIRDSYTHPQFVSD------VMKPLLIEQLMDQE 464
V+Y Q + P TVR L +R + +++ L + ++
Sbjct: 83 VAYVRQDDILLPGL--TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL 140
Query: 465 VVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500
V +SGGE +RV++ + L + ++DEP++ LDS
Sbjct: 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 60/205 (29%), Positives = 89/205 (43%), Gaps = 34/205 (16%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDW------QEI-------LTYFR 148
PGQ +GLVG NG GKST L +L ++ + G + P +W QE L Y
Sbjct: 26 PGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVI 85
Query: 149 GSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDE---RDMKADLCTDLD 205
+ + R LE L + H + G LD D R A L L
Sbjct: 86 DGDRE---YRQLEAQLH-DANERNDGHAIATIHGK----LDAIDAWTIRSRAASLLHGLG 137
Query: 206 LNQV-IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
+ ++R V D SGG R +A + +++ + DEP+++LD L A + L+
Sbjct: 138 FSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD----LDAVIWLEKWLK 193
Query: 265 PNSY---VIVVEHDLSVLDYLSDFI 286
SY +I++ HD LD + D I
Sbjct: 194 --SYQGTLILISHDRDFLDPIVDKI 216
|
Length = 638 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 29/194 (14%)
Query: 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIP--EFNVSYKP---------QK 421
+ +V+LG +G GK++ +R+L L P S + I F+ S P +
Sbjct: 27 QGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT---LNIAGNHFDFSKTPSDKAIRELRRN 83
Query: 422 ISPKFQS-------TVRH-LLHQKIRDS-YTHPQFVSDVMKPLL---IEQLMDQEVVNLS 469
+ FQ TV+ L+ R + Q ++ K L ++ D+ ++LS
Sbjct: 84 VGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLS 143
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV-IKRFILHAKKTAFVVEHDF 528
GG+ QRVA+ L + L DEP+A LD E I A V I R + T +V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPE--ITAQIVSIIRELAETGITQVIVTHEV 201
Query: 529 IMATYLADRVIVYE 542
+A A RV+ E
Sbjct: 202 EVARKTASRVVYME 215
|
Length = 242 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 4e-07
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 15/192 (7%)
Query: 363 KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-DSVEDSDVE-IPEFNVSYKPQ 420
+L V T + + ++G+NG+GK+T R++ GL + + D E + NV +
Sbjct: 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRR 81
Query: 421 KISPKFQSTVRHLLHQKIRDSYT---------HPQFVSDVMKPLLIEQLMD---QEVVNL 468
KI FQ+ + + D + + V + LL ++D +E L
Sbjct: 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARL 141
Query: 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528
SGG+ QRVA+ + +I ++DE ++ LD R +VI + T + HD
Sbjct: 142 SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL 201
Query: 529 IMATYLADRVIV 540
A +DR++V
Sbjct: 202 DEAAS-SDRILV 212
|
Length = 277 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 31/146 (21%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIP-EFNVSYKPQKISPKF-QSTVRHLL 434
+++ GE+G GKT+ +R LAGL + +P + + + PQ+ P Q T+R L
Sbjct: 422 LLITGESGAGKTSLLRALAGLW---PWGSGRISMPADSALLFLPQR--PYLPQGTLREAL 476
Query: 435 -----HQKIRDSYTHPQFVSDVMK----PLLIEQLMD----QEVVNLSGGELQRVALC-L 480
D + V+ L E+L + V LSGGE QR+A L
Sbjct: 477 CYPNAAPDFSD-----AELVAVLHKVGLGDLAERLDEEDRWDRV--LSGGEQQRLAFARL 529
Query: 481 CLGKPADIYLIDEPSAYLD--SEQRI 504
L KP +DE ++ LD +E R+
Sbjct: 530 LLHKP-KWVFLDEATSALDEETEDRL 554
|
Length = 604 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 36/226 (15%)
Query: 82 DTTHRYGPNTF--KLHRLPV-------PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG 132
D TH Y R PV G+ +GL+G +G GKST ++L G KP G
Sbjct: 7 DVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG 66
Query: 133 --RFNNPPDWQ---EILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQ- 186
F +Q + FR ++Q F +D+ A+ P+ V+ +G+
Sbjct: 67 TVSFRGQDLYQLDRKQRRAFR-RDVQLVF----QDSPSAV-NPR------MTVRQIIGEP 114
Query: 187 -----VLDQKDERDMKADLCTDLDL-NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
LD+ +++ A+L + L ++ D+ LSGG+LQR IA ++ +
Sbjct: 115 LRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVL 174
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPN--SYVIVVEHDLSVLDYLSD 284
DE S LD+ + +++R L + +Y+ + HDL ++
Sbjct: 175 DEAVSNLDMVLQAVILELLRKLQQAFGTAYLFIT-HDLRLVQSFCQ 219
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 5e-07
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 29/203 (14%)
Query: 104 QVLGLVGTNGIGKSTALKILAGKLKPNLGRFN-NPPDWQ-EILTYFRGSELQNYFTRILE 161
Q+ ++G +G GK+T L+ ++ R N + P ++ E YF+G ++ + + E
Sbjct: 30 QITAIIGPSGCGKTTLLR--------SINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81
Query: 162 DNLKAIIKPQYVDHIPKAVQGNVG-----------QVLDQKDERDMKADLCTDLDLNQVI 210
K + Q P ++ NV LD+ E +K D ++ +
Sbjct: 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD-EVKSEL 140
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR---PNS 267
++ LSGG+ QR IA E+ + DEP+S LD A Q + LL N
Sbjct: 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP----IATQRIEKLLEELSENY 196
Query: 268 YVIVVEHDLSVLDYLSDFICCLY 290
+++V H++ ++D+I +Y
Sbjct: 197 TIVIVTHNIGQAIRIADYIAFMY 219
|
Length = 250 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-07
Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 31/215 (14%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
+ G+ + L+G +G GKST L +++G +P G G ++
Sbjct: 9 QQGEFISLIGHSGCGKSTLLNLISGLAQPTSGG-----------VILEGKQIT------- 50
Query: 161 EDNLKAIIKPQYVDHIP-KAVQGNVGQVLDQ------KDERDMKADLCTDL-DLNQVIDR 212
E ++ Q +P V+ N+ +D+ K ER + L L + D+
Sbjct: 51 EPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK 110
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD--VKQRLKAAQVVRSLLRPNSYVI 270
G LSGG QR AIA ++ + DEP LD + L+ ++++ V+
Sbjct: 111 RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ-EELMQIWEEHRVTVL 169
Query: 271 VVEHDLSVLDYLSDFICCLYGKPGAY--GVVTLPF 303
+V HD+ LSD + L P A ++ +PF
Sbjct: 170 MVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPF 204
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 6e-07
Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 47/213 (22%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS 423
L V + +++ ++G +G+GK+T + +L GL P S + V + Q +S
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGD----------VIFNGQPMS 74
Query: 424 PKFQSTVR-HLLHQKIRDSYT--H--PQF--VSDVMKPLLI------------------- 457
K S + L +QK+ Y H P F + +V PLLI
Sbjct: 75 -KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV 133
Query: 458 --EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI- 514
E + LSGGE QRVA+ L + L DEP+ LD R A I + +
Sbjct: 134 GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD--AR--NADSIFQLLG 189
Query: 515 -LHAKK-TAF-VVEHDFIMATYLADRVIVYEGQ 544
L+ + TAF VV HD +A ++ ++ + +G+
Sbjct: 190 ELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGR 222
|
Length = 233 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 6e-07
Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 50/209 (23%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNNPP--DWQEILTYFRGSELQNYF 156
+ G+ + L+G G GKST L++L P G N P D+ E + L+
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE-------AALRQAI 416
Query: 157 T----RI------LEDNLKAIIKPQYVDHIPKAVQGNVG-QVLDQKDERDMKADLCTDLD 205
+ R+ L DNL + P D V VG + L + D+
Sbjct: 417 SVVSQRVHLFSATLRDNLL-LAAPNASDEALIEVLQQVGLEKLLEDDKG----------- 464
Query: 206 LNQVIDRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRS 261
LN + G+ LSGGE +R IA + +A + + DEP+ LD + + +
Sbjct: 465 LNAWL----GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE----RQILE 516
Query: 262 LLRP---NSYVIVVEHDLSVLDYLSDFIC 287
LL N V+++ H L+ L+ D IC
Sbjct: 517 LLAEHAQNKTVLMITHRLTGLEQF-DRIC 544
|
Length = 574 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 6e-07
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 26/190 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRG---SELQNYFT 157
RPG++ L G +G GKST LK++ G +P+ G+ +F G + L+N
Sbjct: 26 RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI-----------WFSGHDITRLKNREV 74
Query: 158 RILEDNLKAIIKPQYVDH---IPKAVQGNVGQ--VLDQKDERDMKADLCTDLDLNQVIDR 212
L + I + DH + + V NV ++ D++ + LD ++D+
Sbjct: 75 PFLRRQIGMIFQ----DHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDK 130
Query: 213 NVG---DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269
LSGGE QR IA V + + DEP+ LD ++ R V
Sbjct: 131 AKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTV 190
Query: 270 IVVEHDLSVL 279
++ HD+ ++
Sbjct: 191 LMATHDIGLI 200
|
Length = 222 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ--NYFTRI 159
PG+++ L G +G GK+T L ++ G G L G EL + +
Sbjct: 30 PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS----------LKVL-GQELYGASEKELV 78
Query: 160 -LEDNLKAIIKPQYVDHIPKAVQGNVGQVLD------QKDERDMKADLCTDLDLNQVIDR 212
L N+ I + + A Q NV L+ ++ R+ + + L +D
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQ-NVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY 137
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIV 271
+LSGG+ QR AIA V ++ + DEP++ LD K ++++ L R +++
Sbjct: 138 YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI 197
Query: 272 VEHDLSVLD 280
V HD +LD
Sbjct: 198 VTHDNRILD 206
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 34/222 (15%)
Query: 73 INLPKDLD-KDTTHRYGPNTFKLHRLPVPRP-GQVLGLVGTNGIGKSTALKILAGKLKPN 130
NL D+ D ++ YG + L + + +VG +G GKST K+L G +
Sbjct: 468 NNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR 527
Query: 131 LGRFN-NPPDWQEI-LTYFRGSELQNY-------FTRILEDNLKAIIKPQYVDHIPKAVQ 181
G N ++I R NY F+ + +NL K Q
Sbjct: 528 SGEILLNGFSLKDIDRHTLRQF--INYLPQEPYIFSGSILENLLLGAKE-------NVSQ 578
Query: 182 GNVGQVLD----QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEI 237
+ + + D +M T+L +SGG+ QR A+A + ++++
Sbjct: 579 DEIWAACEIAEIKDDIENMPLGYQTELSEEG------SSISGGQKQRIALARALLTDSKV 632
Query: 238 YMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV-VEHDLSV 278
+ DE +S LD + ++V +LL I+ V H LSV
Sbjct: 633 LILDESTSNLDT---ITEKKIVNNLLNLQDKTIIFVAHRLSV 671
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 7e-07
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLG 132
PG +GLVG NG GKST LK++AG+L+P+ G
Sbjct: 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEG 55
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 61/227 (26%), Positives = 93/227 (40%), Gaps = 37/227 (16%)
Query: 85 HRYGPNTFKLH-RLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI 143
R G F L +P G + L G +G GK++ + ++AG +P+ GR
Sbjct: 8 QRLG--NFALDANFTLPARG-ITALFGPSGSGKTSLINMIAGLTRPDEGRI--------- 55
Query: 144 LTYFRGSELQNYFTRILEDNLKAIIKPQYVDHI----------PK-AVQGNVGQVLDQKD 192
EL R+L D K I P I P V+GN+ + +
Sbjct: 56 -------ELNG---RVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSM 105
Query: 193 ERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252
L L + ++DR G LSGGE QR AI + E+ + DEP + LD+ ++
Sbjct: 106 RAQF-DQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164
Query: 253 LKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCL-YGKPGAYG 297
+ + L N ++ V H L + L+D + L GK A G
Sbjct: 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 30/193 (15%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
+PG++L L+G NG GKST ++++ G + P+ G
Sbjct: 28 KPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------------------- 65
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQ---VIDRNVGDL 217
L+ PQ + ++ + V + L + K D+ L Q +ID + L
Sbjct: 66 --KLRIGYVPQKL-YLDTTLPLTVNRFLRLRPGTK-KEDILPALKRVQAGHLIDAPMQKL 121
Query: 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDL 276
SGGE QR +A + ++ + DEP+ +DV ++ ++ L R + V++V HDL
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL 181
Query: 277 SVLDYLSDFICCL 289
++ +D + CL
Sbjct: 182 HLVMAKTDEVLCL 194
|
Length = 251 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 7e-07
Identities = 47/212 (22%), Positives = 92/212 (43%), Gaps = 37/212 (17%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
N L++ GE ++ ++G +G+GK+T +++ P++ V+ D+ + +
Sbjct: 20 NISLRIKPGE-----VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPA-W 73
Query: 417 YKPQKISPKFQSTVRHLLHQKIRD--SYTHP-----------------QFVSDVMKPLLI 457
+ Q + Q V L ++ IRD + P F+S++ P
Sbjct: 74 LRRQ-VGVVLQENV--LFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISEL--PEGY 128
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
+ ++ ++ LSGG+ QR+A+ L I + DE ++ LD E + + A
Sbjct: 129 DTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--A 186
Query: 518 KKTAFVVEHDFIMATYLADRVIVYEGQPSVDC 549
+T ++ H + ADR+IV E V+
Sbjct: 187 GRTVIIIAHR-LSTVKNADRIIVMEKGRIVEQ 217
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 19/181 (10%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKPQKISPKFQS-- 428
++ +LG +G GKTT +R++AGL KP ++ DV + S + + I FQS
Sbjct: 33 TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT----HRSIQQRDICMVFQSYA 88
Query: 429 ---------TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALC 479
V + L Q V + ++ + + D+ V +SGG+ QRVAL
Sbjct: 89 LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALA 148
Query: 480 LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 539
L + L DEP + LD+ R + I+ T+ V HD A ++D VI
Sbjct: 149 RALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVI 208
Query: 540 V 540
V
Sbjct: 209 V 209
|
Length = 351 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 33/191 (17%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPE-FNVSYKP 419
N L + GE + ++GENG GKTT +R L G L+PDS V+ E N+ Y
Sbjct: 337 NLNLLLEAGE-----RLAIIGENGVGKTTLLRTLVGELEPDSGT---VKWSENANIGYYA 388
Query: 420 QKISPKFQS--TVRHLLHQKIRDSYTHP----QFVSDVMKPLLIEQLMD---QEVVNLSG 470
Q + F++ T+ + Q + Q V + LL Q D + V LSG
Sbjct: 389 QDHAYDFENDLTLFDWMSQ-----WRQEGDDEQAVRGTLGRLLFSQ--DDIKKSVKVLSG 441
Query: 471 GELQRVALC-LCLGKPADIYLIDEPSAYLDSEQRIVAAKV-IKRFILHAKKTAFVVEHDF 528
GE R+ L + KP ++ ++DEP+ ++D E I + + ++++ + T V HD
Sbjct: 442 GEKGRMLFGKLMMQKP-NVLVMDEPTNHMDMES-IESLNMALEKY----EGTLIFVSHDR 495
Query: 529 IMATYLADRVI 539
+ LA R+I
Sbjct: 496 EFVSSLATRII 506
|
Length = 530 |
| >gnl|CDD|235941 PRK07118, PRK07118, ferredoxin; Validated | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 7e-07
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 3 DRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTG-KLCIEVTPAAKI------AFISEELC 55
+A S D K K ++ C+ C G C++ PA I A I +E C
Sbjct: 191 SARVFVACNSKD--KGKAVKKVCEVGC----IGCGKCVKACPAGAITMENNLAVIDQEKC 244
Query: 56 IGCGICVKKCPFEAIQIINLP 76
CG CV+KCP +AI+I+N P
Sbjct: 245 TSCGKCVEKCPTKAIRILNKP 265
|
Length = 280 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 111/499 (22%), Positives = 182/499 (36%), Gaps = 117/499 (23%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
G+V L+G NG GKST +KI+AG + PPD + G T
Sbjct: 35 HAGEVHALLGGNGAGKSTLMKIIAGIV---------PPDSGTLEI---GGNPCARLTPAK 82
Query: 161 EDNLKAIIKPQYVDHIPK-AVQGNV--GQVLDQKDERDMK---ADLCTDLDLNQVIDRNV 214
L + PQ P +V+ N+ G Q + MK A L LDL D +
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL----DSSA 138
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEH 274
G L + Q I ++++ I + DEP++ L + + +R LL ++ + H
Sbjct: 139 GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISH 198
Query: 275 DLSVLDYLSDFICCLYGKPGAYGVVTLPFSV-REGINIFLAGFVPTENLRFRDESLTFRV 333
L + L+D I SV R+G I L+G T +L D+ +
Sbjct: 199 KLPEIRQLADRI-----------------SVMRDGT-IALSG--KTADLS-TDDIIQ--- 234
Query: 334 AETPQESAEEI----ETYARYKYPTMVKTQGNFKLKVVE--GE-FTD-------SQIIVM 379
A TP + + + + + G L V + GE F + +I+ +
Sbjct: 235 AITPAAREKSLSASQKLWLELPGNRRQQAAGAPVLTVEDLTGEGFRNISLEVRAGEILGL 294
Query: 380 LGENGTGKTTFIRMLAGLLKPDS----VEDSD--------------VEIPE--------- 412
G G G+T L GL + + V +PE
Sbjct: 295 AGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354
Query: 413 -----FNVS-----YKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD 462
+NV + I P ++ V + + + H +
Sbjct: 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAE---------------- 398
Query: 463 QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF 522
Q LSGG Q+V + CL + ++DEP+ +D R ++I+ + A+ A
Sbjct: 399 QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRS--IAAQNVAV 456
Query: 523 V-VEHDFIMATYLADRVIV 540
+ + D +ADRV+V
Sbjct: 457 LFISSDLEEIEQMADRVLV 475
|
Length = 510 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 30/186 (16%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRH-- 432
+I+ LG NG GK+T ++++ G L PDS V++ +V P+++ H
Sbjct: 29 RIVGFLGPNGAGKSTTMKIITGYLPPDS---GSVQVCGEDVLQNPKEVQRNIGYLPEHNP 85
Query: 433 -LLHQKIRDSYTHPQFVSDV--MKPLL----IEQLMDQ---------EVVNLSGGELQRV 476
L +R+ + QF++ + MK L +E++++ ++ LS G QRV
Sbjct: 86 LYLDMYVRE---YLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRV 142
Query: 477 ALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLA- 535
L L + ++DEP+ LD Q + VIK + KT + H IM A
Sbjct: 143 GLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN--IGKDKTIILSTH--IMQEVEAI 198
Query: 536 -DRVIV 540
DRVI+
Sbjct: 199 CDRVII 204
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 34/174 (19%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--------FNNPPDWQEILTYFRGSELQ 153
G+++G +G NG GKST +KI+ G L P+ G NP + Q + Y
Sbjct: 27 KGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY------- 79
Query: 154 NYFTRILEDNLKAIIKPQYVDHIPK---AVQGNVGQVLDQKDERDMKA--DLCTDLDLNQ 208
+ E N P Y+D + + + Q ++ ++ +L L
Sbjct: 80 -----LPEHN------PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELV---GLRP 125
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL 262
+ +G LS G QR +A + + ++ + DEP++ LD Q ++ V++++
Sbjct: 126 EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI 179
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 8e-07
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 31/171 (18%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--------NNPPDWQEILTYFRGSELQN 154
G ++ L+G +G GKST L+I+AG +P+ GR ++I F+ L
Sbjct: 26 GSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFK 85
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNV 214
+ T + DN+ ++ + H ++ V ++L+ + L + DR
Sbjct: 86 HLT--VRDNIAFGLEIR--KHPKAKIKARVEELLEL-------------VQLEGLGDRYP 128
Query: 215 GDLSGGELQRFAIA-VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
LSGG+ QR A+A +AV+ ++ + DEP LD K R + +RS LR
Sbjct: 129 NQLSGGQRQRVALARALAVE-PQVLLLDEPFGALDAKVR----KELRSWLR 174
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 8e-07
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPAD--IYLIDEPSAYLDSEQRIVAAKVIKRFILHAK 518
+ Q++ LSGGELQRV L L ++++DEPS L + +VIK ++
Sbjct: 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG-LIDLG 139
Query: 519 KTAFVVEHDFIMATYLADRVI 539
T ++EH+ + + AD +I
Sbjct: 140 NTVILIEHNLDVLSS-ADWII 159
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 25/203 (12%)
Query: 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE---DS 406
+ Y F + + +++ ++G NG+GK+T +L GL +P S E D
Sbjct: 330 FAYQDN-----GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD- 383
Query: 407 DVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTH--PQFVSDVMKPLLIE---QLM 461
+ + S F T HL Q + P V ++ L + +L
Sbjct: 384 GKPVTAEQPEDYRKLFSAVF--TDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELE 441
Query: 462 DQEVVN--LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK 519
D + N LS G+ +R+AL L L + DI L+DE +A D R +V+ + K
Sbjct: 442 DGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGK 501
Query: 520 TAFVVEHD---FIMATYLADRVI 539
T F + HD FI ADR++
Sbjct: 502 TIFAISHDDHYFIH----ADRLL 520
|
Length = 547 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 8e-07
Identities = 46/200 (23%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPD-------SVEDSDVEIPEFN 414
LK ++ +F ++I ++G +G GK+T++R L + L P S+ ++ P +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 415 VSYKPQKISPKFQ-----------STVRHLLHQKIRDSYTHPQFVSDVMKPLLI-EQLMD 462
V +++ FQ + + L ++D + V +K I +++ D
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 463 ---QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK 519
+ ++LSGG+ QRV + L D+ L+DEP++ LD +++ I+ +L +
Sbjct: 141 HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDP----ISSTQIENMLLELRD 196
Query: 520 --TAFVVEHDFIMATYLADR 537
T +V H A+ ++D+
Sbjct: 197 QYTIILVTHSMHQASRISDK 216
|
Length = 252 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 8e-07
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 38/193 (19%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
PG+ + +VG G GK+T + +L P G+ D +I R L++ +L+
Sbjct: 28 PGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL--IDGIDIRDISR-KSLRSMIGVVLQ 84
Query: 162 D----------NLK---AIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL--DL 206
D N++ + V K + D L
Sbjct: 85 DTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH---------------DFIMKLPNGY 129
Query: 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK--QRLKAAQVVRSLLR 264
+ V+ N G+LS GE Q AIA +++ +I + DE +S +D + + ++ A + L++
Sbjct: 130 DTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEA--LEKLMK 187
Query: 265 PNSYVIVVEHDLS 277
I++ H LS
Sbjct: 188 -GRTSIIIAHRLS 199
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 8e-07
Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 23/199 (11%)
Query: 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRFNN--PPDWQEILTYFRGSELQNYFTRILED 162
V ++G +G GKST L+ + R N+ P F G ++ FT +
Sbjct: 67 VTAIIGPSGCGKSTFLR--------AINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL 118
Query: 163 NLKAIIKPQYVDHIPKAVQGNVG-----------QVLDQKDERDMKADLCTDLDLNQVID 211
K + Q + PK++ N+ + L++ E+ ++ D +++ +D
Sbjct: 119 RKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-EVSDRLD 177
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
+N LSGG+ QR +A EI + DEP+S LD K K +++ LR + +++
Sbjct: 178 KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE-LRGSYTIMI 236
Query: 272 VEHDLSVLDYLSDFICCLY 290
V H++ +SD+ Y
Sbjct: 237 VTHNMQQASRVSDYTMFFY 255
|
Length = 286 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 20/181 (11%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G+++G +G NG GK+T LKIL+G L+P G + + + RI
Sbjct: 47 GEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV-------RVAGLVPWKRRKKFLRRI--- 96
Query: 163 NLKAII---KPQYVDHIPKAVQGNVGQVLDQKDERDMKADL--CTD-LDLNQVIDRNVGD 216
++ K Q +P + + K L ++ LDL +++D V
Sbjct: 97 ---GVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQ 153
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHD 275
LS G+ R IA + EI DEP+ LDV + ++ R + V++ H
Sbjct: 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213
Query: 276 L 276
+
Sbjct: 214 M 214
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 9e-07
Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 43/206 (20%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQ----EILTYFRGSELQNYF 156
+ G++ ++G NG GKST K +AG P ++ I F+G +L
Sbjct: 24 KKGEIHAIMGPNGSGKSTLSKTIAGH-----------PSYEVTSGTI--LFKGQDLLE-- 68
Query: 157 TRILEDNLKA----IIKPQYVDHIP------------KAVQGNVGQ-VLDQKD-ERDMKA 198
LE + +A + QY + IP A + G+ LD D + +KA
Sbjct: 69 ---LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKA 125
Query: 199 DLCTDLDLNQ-VIDRNVGD-LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAA 256
L L +++ ++R+V + SGGE +R I +A+ ++ + DE S LD+ A
Sbjct: 126 KLAL-LGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA 184
Query: 257 QVVRSLLRPNSYVIVVEHDLSVLDYL 282
+ + L P+ +++ H +L+Y+
Sbjct: 185 EGINRLREPDRSFLIITHYQRLLNYI 210
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 9e-07
Identities = 68/289 (23%), Positives = 102/289 (35%), Gaps = 70/289 (24%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
N L + EGE I V++G +G+GK+T +R + GL + V V + + + S
Sbjct: 42 NASLDIEEGE-----ICVLMGLSGSGKSTLLRAVNGL---NPVSRGSVLVKDGDGSVDVA 93
Query: 421 KISPKFQSTVRHLLHQKIRDSYTHPQF-------VSDVM--------------KPLLIEQ 459
T+R L ++ S QF V + + + + EQ
Sbjct: 94 NCDAA---TLRRLRTHRV--SMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQ 148
Query: 460 LMDQEVVNL-----------SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAK 508
L E+V L SGG QRV L A I L+DEP + LD R
Sbjct: 149 L---ELVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQD 205
Query: 509 VIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG--------------QPSVDCVAN-- 552
+ KKT V HD A + +R+ + EG P+ D VA+
Sbjct: 206 ELLELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFV 265
Query: 553 ---APQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAG 598
P ++LT +L + R D+ K
Sbjct: 266 AHTNPLNVLTARDLMRPLTTLEKVDGEWCVSKRY---DTWLKTADKQVR 311
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|215671 pfam00037, Fer4, 4Fe-4S binding domain | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 9e-07
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 50 ISEELCIGCGICVKKCPFEAIQ 71
I EE CIGCG CV+ CP AI
Sbjct: 3 IDEEKCIGCGACVEVCPVGAIT 24
|
Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Length = 24 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 31/181 (17%)
Query: 99 VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNL---------GRFNNPPDWQEILTYFRG 149
V +PG++L ++G++G GK+T + LA + + G + + + I Y +
Sbjct: 47 VAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQ 106
Query: 150 SELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQV 209
+L T + ++L + H+ + + + +K++R+ ++ L L +
Sbjct: 107 DDL-FIPTLTVREHL------MFQAHL------RMPRRVTKKEKRERVDEVLQALGLRKC 153
Query: 210 IDRNVGD------LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263
+ +G LSGGE +R A A + + + DEP+S LD A VV+ L
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD---SFMAYSVVQVLK 210
Query: 264 R 264
Sbjct: 211 G 211
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 34/186 (18%)
Query: 103 GQVLGLVGTNGIGKSTALKILAG-------KLKPNLGRFNN-PPDWQEILTYFRGSELQN 154
G+ + VG +G GKST L+++AG L R N+ PP + + F+ L
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYP 88
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTD-LDLNQVIDRN 213
+ + + +N+ +K K+E + + + + L L ++DR
Sbjct: 89 HLS--VAENMSFGLKLAGAK----------------KEEINQRVNQVAEVLQLAHLLDRK 130
Query: 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD----VKQRLKAAQVVRSLLRPNSYV 269
LSGG+ QR AI V +++ DEP S LD V+ R++ +++ + L +
Sbjct: 131 PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL---GRTM 187
Query: 270 IVVEHD 275
I V HD
Sbjct: 188 IYVTHD 193
|
Length = 369 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 26/184 (14%)
Query: 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKI-----SPKF- 426
+I LG NG GKTT ++++ GL+KPDS E + ++I +P F
Sbjct: 25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFY 84
Query: 427 -QSTVRH--LLHQK---IRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480
T R L + IR + +V+ + ++ ++V S G QR+ + L
Sbjct: 85 PNLTARENLRLLARLLGIRKKR-----IDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIAL 139
Query: 481 C-LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL-HAK--KTAFVVEHDFIMATYLAD 536
LG P D+ ++DEP+ LD + K ++ IL T + H +AD
Sbjct: 140 ALLGNP-DLLILDEPTNGLDPD----GIKELRELILSLRDQGITVLISSHLLSEIQKVAD 194
Query: 537 RVIV 540
R+ +
Sbjct: 195 RIGI 198
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 30/198 (15%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G + +VG +G GKST +K++ + P G G +++ L
Sbjct: 29 GAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI-----------LIDGVDIKTIDVIDLRR 77
Query: 163 NLKAIIKPQYVDHIPKAVQGNV--GQVLDQKDERDMKADL---CTDLDLNQVIDRNVGDL 217
+ + + ++ V+ N+ G +L K E+++ + L+ + R+V +L
Sbjct: 78 KIGMVFQQPHL--FEGTVKDNIEYGPML--KGEKNVDVEYYLSIVGLN-KEYATRDVKNL 132
Query: 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-----RPNSYVIVV 272
SGGE QR +IA N E+ + DEP+S LD + +++ L+ + N VI +
Sbjct: 133 SGGEAQRVSIARTLANNPEVLLLDEPTSALDP----TSTEIIEELIVKLKNKMNLTVIWI 188
Query: 273 EHDLSVLDYLSDFICCLY 290
H++ + D+ L
Sbjct: 189 THNMEQAKRIGDYTAFLN 206
|
Length = 241 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 41/243 (16%)
Query: 81 KDTTHRYGPNTFKLHRLPVPRP-GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPD 139
+D + Y + L+ + P + ++G NG GKST + G LKP G
Sbjct: 7 RDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG------- 59
Query: 140 WQEILTYFRGSELQNYFTRILEDNLKAIIKPQYV--------DHI--PKAVQ----GNVG 185
+L RG I ++N++ + K +V D I P Q G +
Sbjct: 60 --SVLI--RGEP-------ITKENIREVRK--FVGLVFQNPDDQIFSPTVEQDIAFGPIN 106
Query: 186 QVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSS 245
LD++ + L L ++ DR LSGGE +R AIA V ++ + DEP++
Sbjct: 107 LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166
Query: 246 YLDVKQRLKAAQVVRSLLRPNSY---VIVVEHDLSVLDYLSDFICCL-YGKPGAYGVVTL 301
LD + + + L P +Y VI H L ++ ++D+I + G+ AYG V
Sbjct: 167 GLDPQGVKELIDFLNDL--PETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEE 224
Query: 302 PFS 304
F
Sbjct: 225 IFL 227
|
Length = 277 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 28/208 (13%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G+ +GL+G G GKST ++ L G LKP G+ G ++ + ++ +
Sbjct: 33 GEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI-----------IIDGVDITDKKVKLSDI 81
Query: 163 NLKAIIKPQYVDH------IPKAVQ---GNVGQVLDQKDERDMKADLCTDLDLNQVIDRN 213
K + QY ++ I K + N+G ++ + R +A LD D++
Sbjct: 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS 141
Query: 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVV 272
+LSGG+ +R AIA V +I + DEP++ LD K R + ++ L + N +I+V
Sbjct: 142 PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILV 201
Query: 273 EHDLSVLDYLSDFI-------CCLYGKP 293
H + + L+D I C L G P
Sbjct: 202 SHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
Length = 287 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 46/217 (21%)
Query: 358 TQGNFKLKVVEG-EFT--DSQIIVMLGENGTGKTTFIRMLAGLLKPDS------VEDSDV 408
QG +L V++ T + + + G +G GK+T ++ L PDS E + V
Sbjct: 15 QQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWV 74
Query: 409 EIPEFNVSYKPQKISPKFQST---VRHLLHQKIRDSYTHPQFVSDVMKPLLI-------- 457
++ P+++ + T V L R S + V +PLL
Sbjct: 75 DL----AQASPREVLEVRRKTIGYVSQFLRVIPRVSA-----LEVVAEPLLERGVPREAA 125
Query: 458 --------------EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503
E+L SGGE QRV + I L+DEP+A LD+ R
Sbjct: 126 RARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANR 185
Query: 504 IVAAKVIKRFILHAKKTAFV-VEHDFIMATYLADRVI 539
V ++I A+ A + + HD + +ADRV+
Sbjct: 186 QVVVELIAE--AKARGAALIGIFHDEEVRELVADRVM 220
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 43/211 (20%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNV------SY 417
LK VE + + ++G +G+GK+T + +LAGL P S E + P + +
Sbjct: 26 LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85
Query: 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLI----------------EQL- 460
+ + + FQS HL+ + T + +V PL + E +
Sbjct: 86 RARHVGFVFQSF--HLI-----PNLTA---LENVALPLELRGESSADSRAGAKALLEAVG 135
Query: 461 ----MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK-RFIL 515
+ LSGGE QRVAL D+ DEP+ LD K+ F L
Sbjct: 136 LGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA---TGDKIADLLFAL 192
Query: 516 HAKK--TAFVVEHDFIMATYLADRVIVYEGQ 544
+ ++ T +V HD +A ++ + G+
Sbjct: 193 NRERGTTLVLVTHDPQLAARCDRQLRLRSGR 223
|
Length = 228 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 30/198 (15%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-------DSVEDSDVEIPEF 413
+ L + +GE I +LG +G GK+T +RMLAG +P D V+ S V P +
Sbjct: 37 DVSLTIYKGE-----IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--PPY 89
Query: 414 NVSYKPQKISPKFQSTV--RHL-LHQKI-----RDSYTHPQFVSDVMKPLLI---EQLMD 462
+ I+ FQS H+ + Q I +D + S V + L + ++
Sbjct: 90 Q-----RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK 144
Query: 463 QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF 522
++ LSGG+ QRVAL L K + L+DEP LD + R + + T
Sbjct: 145 RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCV 204
Query: 523 VVEHDFIMATYLADRVIV 540
+V HD A +A R+ +
Sbjct: 205 MVTHDQEEAMTMAGRIAI 222
|
Length = 377 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 348 ARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----V 403
T + + L++ +GE I ++G +G GK+T +R++ L +P S V
Sbjct: 14 TGTGTVTALD---DVSLEIPKGE-----IFGIIGYSGAGKSTLLRLINLLERPTSGSVFV 65
Query: 404 EDSDV-EIPEFNVSYKPQKISPKFQSTVRHLLHQK-IRDSYTHP------------QFVS 449
+ D+ + E + QKI FQ +LL + + ++ P Q V+
Sbjct: 66 DGQDLTALSEAELRQLRQKIGMIFQHF--NLLSSRTVFENVAFPLELAGVPKAEIKQRVA 123
Query: 450 DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501
++++ + + D+ LSGG+ QRVA+ L I L DE ++ LD E
Sbjct: 124 ELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175
|
Length = 339 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 14/153 (9%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
G++ G++G +G GKST ++ + G +P G D ++ T G EL+ RI
Sbjct: 29 PKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL--VDGTDL-TLLSGKELRKARRRI- 84
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKAD-LCTDLDLNQVIDRNVG 215
+I + + V NV L+ K E + + L + L D
Sbjct: 85 -----GMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPA 139
Query: 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
LSGG+ QR IA N ++ + DE +S LD
Sbjct: 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALD 172
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 40/216 (18%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
+ L + +G +T +G G+GK+T +++L GL P V+D+ + N
Sbjct: 25 DVNLTIEDGSYT-----AFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKD 79
Query: 417 YKP--QKISPKFQSTVRHLLHQKI-RDSYTHPQ-F-VSDV-------MKPLLI---EQLM 461
K +K+ FQ L + + +D PQ F VS K L+ E L
Sbjct: 80 IKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLF 139
Query: 462 DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK-KT 520
++ LSGG+++RVA+ L I ++DEP+A LD + R + K+ LH T
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK--LHQSGMT 197
Query: 521 AFVVEHDFIM---ATYLADRVIVYE-------GQPS 546
+V H +M A Y AD V V E G+P
Sbjct: 198 IVLVTH--LMDDVANY-ADFVYVLEKGKLVLSGKPK 230
|
Length = 280 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 44/215 (20%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQ----EILTYFRGSELQNYF 156
RPG+V ++G NG GKST LAG+ D++ + F+G +L
Sbjct: 25 RPGEVHAIMGPNGSGKSTLSATLAGR-----------EDYEVTGGTVE--FKGKDLLE-- 69
Query: 157 TRILEDNLKA----IIKPQYVDHIP------------KAVQGNVGQ-VLDQKDERDMKAD 199
L +A + QY IP AV+ GQ LD+ D +D+ +
Sbjct: 70 ---LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEE 126
Query: 200 LCTDLDLNQ-VIDR--NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAA 256
L + + ++ R NVG SGGE +R I +AV E+ + DE S LD+ A
Sbjct: 127 KIALLKMPEDLLTRSVNVG-FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVA 185
Query: 257 QVVRSLLRPNSYVIVVEHDLSVLDYLS-DFICCLY 290
V SL I+V H +LDY+ D++ LY
Sbjct: 186 DGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLY 220
|
Length = 248 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-06
Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 37/158 (23%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLL 434
++I+++G G+GKTT R LA L P
Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPG-------------------------------- 30
Query: 435 HQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494
Y + + + + L+ ++ + + SG R+AL L D+ ++DE
Sbjct: 31 ---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEI 87
Query: 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMAT 532
++ LD+EQ + + + +L K+ + I+ T
Sbjct: 88 TSLLDAEQEALLLLLEELRLLLLLKSEKNL--TVILTT 123
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 61/227 (26%), Positives = 87/227 (38%), Gaps = 50/227 (22%)
Query: 86 RYGPNTFKLH--RLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--NNPPDWQ 141
Y P L+ +P G+ + +VG +G GKST L++L N G +
Sbjct: 271 AYDPRRPILNGISFTIP-LGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRD 329
Query: 142 EILTYFRGSELQNYFTRILEDNLKAI-IKPQYVDHI--------------PKAVQGNVGQ 186
R +AI I PQ D + P A VG
Sbjct: 330 VTQQSLR----------------RAIGIVPQ--DTVLFNDTIAYNIKYGRPDATAEEVGA 371
Query: 187 VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
+ D L D V +R + LSGGE QR AIA ++N I + DE +S
Sbjct: 372 AAEAAQIHDFIQSLPEGYDT-GVGERGL-KLSGGEKQRVAIARTILKNPPILILDEATSA 429
Query: 247 LDVKQRLKAAQVVRSLLRPNS---YVIVVEHDLS-VLDYLSDFICCL 289
LD Q +++ LR S +V+ H LS ++D +D I L
Sbjct: 430 LD----THTEQAIQAALREVSAGRTTLVIAHRLSTIID--ADEIIVL 470
|
Length = 497 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 1e-06
Identities = 44/209 (21%), Positives = 95/209 (45%), Gaps = 27/209 (12%)
Query: 365 KVVEG---EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQK 421
K++EG E S++ ++G +G GK+TF++ L + + +S + + FN + ++
Sbjct: 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR 80
Query: 422 IS------------PK---FQSTVRHLLHQKIRDSYTHPQF-VSDVMKPLL--------I 457
++ PK F +V + ++ P+ + D+++ L I
Sbjct: 81 VNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI 140
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
+ + + ++LSGG+ QR+ + L + L+DEP LD + +I+ L +
Sbjct: 141 KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRS 200
Query: 518 KKTAFVVEHDFIMATYLADRVIVYEGQPS 546
+ T +V H+ + L+D ++G +
Sbjct: 201 ELTMVIVSHNLHQVSRLSDFTAFFKGNEN 229
|
Length = 261 |
| >gnl|CDD|224067 COG1144, COG1144, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-06
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCP 66
R+ D K C+ C CP + I I + C GCGIC CP
Sbjct: 26 RVFRPVVDEDKCINCKL-CWLYCP-----EPAILEEEGGYKVRIDYDYCKGCGICANVCP 79
Query: 67 FEAI 70
+AI
Sbjct: 80 VKAI 83
|
Length = 91 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 28/168 (16%)
Query: 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVED-------SDVEIPEFNV--SYKP 419
E +I+ ++G NG GK+T + +AGLL P S E +Y
Sbjct: 17 AEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLS 75
Query: 420 QKISPKFQSTVRHLL--HQKIRDSYTHPQFVSDVMKPLLIEQLMDQE-----VVNLSGGE 472
Q+ +P F V L HQ T + V+ + + E L + V LSGGE
Sbjct: 76 QQQTPPFAMPVFQYLTLHQP---DKTRTEAVASAL-NEVAEALGLDDKLGRSVNQLSGGE 131
Query: 473 LQRVALC-LCL-----GKP-ADIYLIDEPSAYLDSEQRIVAAKVIKRF 513
QRV L + L P + L+DEP LD Q+ +++
Sbjct: 132 WQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL 179
|
Length = 248 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 42/190 (22%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--------NNPPDWQEILTYFRGSELQN 154
G+ L L+G +G GK+T L+++AG P+ GR + P + + + T F Q+
Sbjct: 40 GEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVF-----QS 94
Query: 155 Y--FTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVID 211
Y F + + +N+ ++ Q P A + R M+A L+ +
Sbjct: 95 YALFPHMTVFENVAFGLRMQKT---PAA----------EITPRVMEALRMVQLE--EFAQ 139
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR------LKAAQVVRSLLRP 265
R LSGG+ QR AIA V ++ + DE S LD K R LKA Q R L
Sbjct: 140 RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQ--RKL--- 194
Query: 266 NSYVIVVEHD 275
+ V HD
Sbjct: 195 GITFVFVTHD 204
|
Length = 375 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 38/186 (20%)
Query: 376 IIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPE-FNVSYKPQKISPKFQSTVRHLL 434
I+ ++G NG GK+T RM+ G +PDS ++I E ++Y Q
Sbjct: 350 IVGVIGPNGAGKSTLFRMITGQEQPDSGT---IKIGETVKLAYVDQS------------- 393
Query: 435 HQKIRDSYTHPQFVSDVMKPLLIEQL---------------MDQE--VVNLSGGELQRVA 477
+ + T + +S + + + + DQ+ V LSGGE RV
Sbjct: 394 RDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVH 453
Query: 478 LCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADR 537
L L ++ L+DEP+ LD E + ++ +L A V+ HD +A
Sbjct: 454 LAKTLKSGGNVLLLDEPTNDLDVE----TLRALEEALLEFAGCAVVISHDRWFLDRIATH 509
Query: 538 VIVYEG 543
++ +EG
Sbjct: 510 ILAFEG 515
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 37/216 (17%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI-----PEFNVSYKPQKISPKFQS- 428
+++ ++GE+G+GK+ + GLL P + S EI P +S + + I+ Q+
Sbjct: 13 EVLALVGESGSGKSLTCLAILGLLPPGLTQTSG-EILLDGRPLLPLSIRGRHIATIMQNP 71
Query: 429 -----TVRHLLHQKIRDSYTHPQFVSDVMKPLL----------IEQLMDQEVVNLSGGEL 473
+ + + I + + +L E+++ + LSGG L
Sbjct: 72 RTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGML 131
Query: 474 QRV--ALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF--ILHAKKTAFV-VEHDF 528
QRV AL L L P + DEP+ LD + A+V+K + T + + HD
Sbjct: 132 QRVMIALALLLEPP--FLIADEPTTDLDV---VNQARVLKLLRELRQLFGTGILLITHDL 186
Query: 529 IMATYLADRVIVYEG-----QPSVDCVANAPQSLLT 559
+ +AD V V + + +V + P+ T
Sbjct: 187 GVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 40/196 (20%)
Query: 103 GQVLGLVGTNGIGKSTALKIL-------AGKLKPNLGRFN--NPPDWQEILTYFR--GSE 151
G+ L L+G +G GKS+ L++L +G L F+ P + I R G
Sbjct: 28 GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMV 87
Query: 152 LQNY-----FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKAD-LCTDLD 205
Q Y T + ++ ++A P V G L KD+ +A+ L L
Sbjct: 88 FQQYNLWPHLT-VQQNLIEA----------PCRVLG-----LS-KDQALARAEKLLERLR 130
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV---RSL 262
L DR LSGG+ QR AIA + ++ +FDEP++ LD + AQ+V R L
Sbjct: 131 LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE---ITAQIVSIIREL 187
Query: 263 LRPNSYVIVVEHDLSV 278
++V H++ V
Sbjct: 188 AETGITQVIVTHEVEV 203
|
Length = 242 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 38/212 (17%)
Query: 81 KDTTHRYGPNTF--KLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR-FNNP 137
K+ T R+G NT L+ L + + G ++ L+G +G GK+T L+++AG KP G+ F +
Sbjct: 10 KNITKRFGSNTVIDNLN-LTIKQ-GTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDG 67
Query: 138 PD-------WQEILTYFRGSELQNY--FTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQV 187
D ++I F Q+Y F + L +N+ +K V
Sbjct: 68 EDVTHRSIQQRDICMVF-----QSYALFPHMSLGENVGYGLKMLGV-------------- 108
Query: 188 LDQKDERDMKADLCTDL-DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
K+ER + +L DL DR V +SGG+ QR A+A + ++ +FDEP S
Sbjct: 109 --PKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166
Query: 247 LDVKQRLKAAQVVRSL-LRPNSYVIVVEHDLS 277
LD R + +R L + N + V HD S
Sbjct: 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQS 198
|
Length = 351 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI- 159
G++ G++G +G GKST L+++ +P G D Q++ +EL+ +I
Sbjct: 30 PKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF--VDGQDLTAL-SEAELRQLRQKIG 86
Query: 160 ---LEDNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMK-ADLCTDLDLNQVID 211
NL + + V NV L+ K E + A+L + L+ D
Sbjct: 87 MIFQHFNLLS----------SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD 136
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
R LSGG+ QR AIA N +I + DE +S LD
Sbjct: 137 RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
|
Length = 339 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 37/204 (18%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV-EIPEFNVSYK 418
L V +GE I ++G +G GK+T IR + GL +P S V+ +D+ + +
Sbjct: 26 LSVPKGE-----IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80
Query: 419 PQKISPKFQSTVRHLLHQK-IRDSYTHP---QFVSDVMKPLLIEQLMDQEVV-------- 466
++I FQ +LL + + ++ P V + +L+ E+V
Sbjct: 81 RRRIGMIFQHF--NLLSSRTVFENVALPLEIAGVPKAEIEERVLELL--ELVGLEDKADA 136
Query: 467 ---NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE--QRIVA--AKVIKRFILHAKK 519
LSGG+ QRV + L + L DE ++ LD E Q I+A + + L
Sbjct: 137 YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGL---- 192
Query: 520 TAFVVEHDFIMATYLADRVIVYEG 543
T ++ H+ + + DRV V E
Sbjct: 193 TIVLITHEMEVVKRICDRVAVMEK 216
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 49/201 (24%), Positives = 92/201 (45%), Gaps = 26/201 (12%)
Query: 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIR----------MLAGLLKPD--SVE 404
K Q F + + + ++I ++G +G GK+TF+R + GL++ + V+
Sbjct: 14 KKQALFDINM---QIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVK 70
Query: 405 DSDVEIPEFNVSYKPQKISPKFQSTVRHL-----LHQKIRDSYTHPQFVSDVMKPL-LIE 458
+ DV NV Q+ + +S ++ LH I++ V D ++ + L E
Sbjct: 71 NQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFE 130
Query: 459 QLMD---QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515
++ D Q + LSGG+ QR+ + L + L+DEP++ LD V +++K L
Sbjct: 131 EVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKE--L 188
Query: 516 HAKKTAFVVEHDFIMATYLAD 536
+ +V H+ +AD
Sbjct: 189 SHNLSMIMVTHNMQQGKRVAD 209
|
Length = 246 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 45/212 (21%)
Query: 360 GNFK-LKVVEGEFTDSQIIVMLGENGTGKTTFIRML------------AG--LLKPDSVE 404
G+F+ L + EF +Q+ ++G +G GK+TF+R L G LL +++
Sbjct: 17 GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76
Query: 405 DSDVEIPEFN--VSYKPQKISPKFQSTV---------------RHLLHQKIRDSYTHPQF 447
D V++ E V QK +P F ++ + L +++ S H
Sbjct: 77 DPHVDVVELRRRVGMVFQKPNP-FPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAAL 135
Query: 448 VSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAA 507
+V L + + LSGG+ QR+ + L ++ L+DEP++ LD +A
Sbjct: 136 WDEVKDRL------HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP----IAT 185
Query: 508 KVIKRFILHAKK--TAFVVEHDFIMATYLADR 537
+ I+ I K T +V H+ A ++D
Sbjct: 186 QKIEELIHELKARYTIIIVTHNMQQAARVSDV 217
|
Length = 253 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 27/201 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR---------FNNPPDWQEILTYFRGSE 151
RP + L+G NG GKST LK L G + + G F + + E E
Sbjct: 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQE 81
Query: 152 LQNYFTRILEDNL---KAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQ 208
L R + DN+ + K +VD K RD KA + +LD++
Sbjct: 82 LNLVLQRSVMDNMWLGRYPTKGMFVDQ--------------DKMYRDTKA-IFDELDIDI 126
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY 268
V LS ++Q IA NA+I + DEP+S L K+ ++R L
Sbjct: 127 DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCG 186
Query: 269 VIVVEHDLSVLDYLSDFICCL 289
++ + H + + L D I L
Sbjct: 187 IVYISHKMEEIFQLCDEITIL 207
|
Length = 491 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 17/188 (9%)
Query: 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKPQKISPKF 426
F ++QI LG NG GKTT + +L GLL P S V D+E + + + P+
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQH 1011
Query: 427 QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD---------QEVVNLSGGELQRVA 477
HL + Y + S L +E +++ +E +LSGG ++++
Sbjct: 1012 NILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLS 1071
Query: 478 LCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADR 537
+ + A + ++DEP++ +D R ++ ++ + +T + H A L DR
Sbjct: 1072 VAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY--RSGRTIIMSTHHMDEADLLGDR 1129
Query: 538 V-IVYEGQ 544
+ I+ +G+
Sbjct: 1130 IAIISQGR 1137
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 45/239 (18%)
Query: 70 IQIINLPKDLDKDTTHRYGPNTFKLHRLPVP---RPGQVLGLVGTNGIGKSTALKILAGK 126
+++ NL K + T + T + + PV R GQ L ++G NG GKST K+LAG
Sbjct: 5 LEVRNLSKTF-RYRTGLFRRQTVEAVK-PVSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62
Query: 127 LKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQ 186
++P G EIL +Y R ++ I + P+ +GQ
Sbjct: 63 IEPTSG---------EILINDHPLHFGDYSFR--SKRIRMIFQDPNTSLNPRL---RIGQ 108
Query: 187 VLDQKDERDMKADLCTDLD----LNQVID--RNVG-----------DLSGGELQRFAIAV 229
+LD L TDL+ Q+ + R VG L+ G+ QR A+A
Sbjct: 109 ILDFP------LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162
Query: 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN--SYVIVVEHDLSVLDYLSDFI 286
+ +I + DE + LD+ R + ++ L SY+ V +H + ++ ++SD +
Sbjct: 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH-IGMIKHISDQV 220
|
Length = 267 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 3e-06
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR 133
R G+V L+G NG GKST +KIL+G KP+ G
Sbjct: 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGE 56
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 3e-06
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 47/197 (23%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNN------PPDWQEI----LTYFR 148
G+++ L+G NG GK+T LK + G ++P GR F+ PP E + Y
Sbjct: 27 ERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPH--ERARLGIAYV- 83
Query: 149 GSELQNYFTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQ----KDERDMKADLCTD 203
E + F R+ +E+NL Y +A + ++ +V + K+ R+ +A
Sbjct: 84 -PEGRRIFPRLTVEENLLL---GAYARRDKEAQERDLEEVYELFPRLKERRNQRA----- 134
Query: 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL- 262
G LSGGE Q AIA + ++ + DEPS L ++ ++
Sbjct: 135 -----------GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIK 180
Query: 263 -LRPNSY--VIVVEHDL 276
LR +++VE +
Sbjct: 181 ELRKEGGMTILLVEQNA 197
|
Length = 237 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 49/217 (22%), Positives = 106/217 (48%), Gaps = 37/217 (17%)
Query: 350 YKYP-TMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE---D 405
++YP + L + G + + ++G +G+GK+T + ++ +PDS + D
Sbjct: 338 FRYPGRDRPALDSISLVIEPG-----ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD 392
Query: 406 SDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRD--SYTHPQFVS--DVMKPL------ 455
++ ++ ++ ++++ S L + I + +Y + ++ + L
Sbjct: 393 -GHDLADYTLASLRRQVA--LVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQ 449
Query: 456 -LIEQL---MDQEV----VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE-QRIVA 506
+++L +D + V LSGG+ QR+A+ L K A I ++DE ++ LD+E +R+V
Sbjct: 450 DFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQ 509
Query: 507 AKVIKRFILHAKKTAFVVEHDFIMATYL-ADRVIVYE 542
A + + L +T V+ H ++T ADR++V +
Sbjct: 510 AALER---LMQGRTTLVIAHR--LSTIEKADRIVVMD 541
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 31/152 (20%)
Query: 378 VMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQST---VRHLL 434
++G NG GKTT + +L G P S + + + + + + V L
Sbjct: 61 AIVGPNGAGKTTLLSLLTGEHPPSSGDVTL-----LGRRFGKGETIFELRKRIGLVSSEL 115
Query: 435 HQKIR--------------DSYTHPQFVSD---------VMKPLLIEQLMDQEVVNLSGG 471
H++ R S Q +++ L + L D+ +LS G
Sbjct: 116 HERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQG 175
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503
E +RV + L K ++ ++DEP+ LD R
Sbjct: 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAR 207
|
Length = 257 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-06
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 38/167 (22%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG-----RFNNPPDWQEILTYFRGSELQNY 155
+PG+++ ++G G G ST LK LA + + N+ +N P ++E + G
Sbjct: 31 KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP-YKEFAEKYPGE----- 84
Query: 156 FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVG 215
I + H P V + LD L + V
Sbjct: 85 ----------IIYVSEEDVHFP---TLTVRETLD------------FALRCKG--NEFVR 117
Query: 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL 262
+SGGE +R +IA V A + +D + LD L+ + +R++
Sbjct: 118 GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|235941 PRK07118, PRK07118, ferredoxin; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 22/82 (26%)
Query: 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFIS--------------E 52
+ +V D+C C C K+CP + IE+ P + F++ E
Sbjct: 161 GLPVVDEDKCT--GC-GACVKACP-----RNVIELIPKSARVFVACNSKDKGKAVKKVCE 212
Query: 53 ELCIGCGICVKKCPFEAIQIIN 74
CIGCG CVK CP AI + N
Sbjct: 213 VGCIGCGKCVKACPAGAITMEN 234
|
Length = 280 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 36/180 (20%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFN-VSYKPQKI 422
LK + + Q++ + G G+GK++ + M+ G L+P S+ +I +S+ PQ
Sbjct: 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-----SEGKIKHSGRISFSPQ-- 494
Query: 423 SPKFQSTVRHLLHQKIRD------SYTHPQFVSDVMKPLLIEQLM-----DQEV-----V 466
++ I+D SY ++ S + L E + D+ V +
Sbjct: 495 -------TSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGI 547
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVV 524
LSGG+ R++L + K AD+YL+D P +LD +E+ I + + K L + KT +V
Sbjct: 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK---LMSNKTRILV 604
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 211 DRNVGDLSGGELQRFAIA------VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
R+ LSGGE QR +A + V +Y+ DEPS L + + + ++ L
Sbjct: 132 SRSAPTLSGGEAQRIRLATQIGSGLTGV----LYVLDEPSIGLHPRDNDRLIETLKRLRD 187
Query: 265 PNSYVIVVEHDLSVL---DYLSDF 285
+ V+VVEHD + D++ D
Sbjct: 188 LGNTVLVVEHDEDTIRAADHVIDI 211
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 33/189 (17%)
Query: 376 IIVMLGENGTGKTTFIRMLAGLLKPD--SVEDSDVEIPEFN-------VSYKPQKISPKF 426
+ ++G +G+GK+T R++ G+ P SV ++ +++ + Y PQ + F
Sbjct: 346 ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVE-LF 404
Query: 427 QSTVRHLLHQKI---RDSYTHPQFV-----SDVMKPLL-IEQLMDQEV----VNLSGGEL 473
TV + I ++ + + + V + +L + D + LSGG+
Sbjct: 405 PGTVA----ENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR 460
Query: 474 QRVALCLCL-GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK-TAFVVEHDFIMA 531
QR+AL L G P + ++DEP++ LD E A IK L A+ T V+ H
Sbjct: 461 QRIALARALYGDPK-LVVLDEPNSNLDEEGEQALANAIKA--LKARGITVVVITHR-PSL 516
Query: 532 TYLADRVIV 540
D+++V
Sbjct: 517 LGCVDKILV 525
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 20/205 (9%)
Query: 81 KDTTHRYGPNTFKLHRLPVP-RPGQVLGLVGTNGIGKSTALK-------ILAGKLKPNLG 132
K+ + +GP LH + + G+V+ ++G +G GKST L+ I +G L +
Sbjct: 5 KNVSKHFGPTQV-LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGL 63
Query: 133 RFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKD 192
+ N+P + ++ G Q ++ L +L A+ + V P V+G +++
Sbjct: 64 KVNDPKVDERLIRQEAGMVFQQFY---LFPHLTAL---ENVMFGPLRVRG-----ASKEE 112
Query: 193 ERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252
+L + L + +LSGG+ QR AIA ++ +FDEP+S LD + R
Sbjct: 113 AEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR 172
Query: 253 LKAAQVVRSLLRPNSYVIVVEHDLS 277
+ +V++ L +++V H++
Sbjct: 173 HEVLKVMQDLAEEGMTMVIVTHEIG 197
|
Length = 240 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 53/203 (26%), Positives = 79/203 (38%), Gaps = 56/203 (27%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG---------RFNNPPDWQEILTYFRGSE 151
PG+ + LVG++G GKST + +L P G R N + + E
Sbjct: 27 PPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLV-SQE 85
Query: 152 LQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI- 210
+ I E N++ Y D DE +A +++ I
Sbjct: 86 PVLFDGTIAE-NIR------YGKP-------------DATDEEVEEA--AKKANIHDFIM 123
Query: 211 ------DRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD------VKQRLK 254
D VG+ LSGG+ QR AIA ++N +I + DE +S LD V++ L
Sbjct: 124 SLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALD 183
Query: 255 AAQVVRSLLRPNSYVIVVEHDLS 277
A R+ IV+ H LS
Sbjct: 184 RAMKGRT-------TIVIAHRLS 199
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 54/226 (23%), Positives = 88/226 (38%), Gaps = 50/226 (22%)
Query: 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VED 405
YKY + ++ L V E + +V+LG NG+GK+T + + LL P V+
Sbjct: 12 YKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDG 71
Query: 406 SDVE--------------------------IPEFNVSYKPQK--ISPKFQSTVRHLLHQK 437
D I E +V++ P+ I P+ +
Sbjct: 72 LDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPE-----------E 120
Query: 438 IRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497
IR+ V + +K + + + LSGG+ QRVA+ L + + DEP+A
Sbjct: 121 IRER------VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAM 174
Query: 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543
LD R IK T ++ H ++ ADR+IV +
Sbjct: 175 LDPSGRREVVNTIKELNKKYGITIILITH-YMEEAVEADRIIVMDS 219
|
Length = 280 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 52/209 (24%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS 423
L V +GEF + +LG +G GKTT +R++AGL + + + +++ P
Sbjct: 25 LSVKKGEF-----VCLLGPSGCGKTTLLRIIAGLERQTAGT---IYQGGRDITRLP---- 72
Query: 424 PK-------FQS-----------TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEV 465
P+ FQS + + L + + V++++ ++
Sbjct: 73 PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELL-----------DL 121
Query: 466 VNLSG-----------GELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI 514
V L G G+ QRVAL L + L+DEP + LD+ R I++
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181
Query: 515 LHAKKTAFVVEHDFIMATYLADRVIVYEG 543
T +V HD A +ADR++V
Sbjct: 182 RRLGVTTIMVTHDQEEALSMADRIVVMNH 210
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224068 COG1145, NapF, Ferredoxin [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 45.7 bits (107), Expect = 3e-06
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 14 DRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQII 73
++C C C K CP IE I +LC+ CG C+K CP +A+ I
Sbjct: 29 EKCIG--CGL-CVKVCPTG--AIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSIA 83
Query: 74 NLPKDLDK 81
+ +
Sbjct: 84 EELVNAGE 91
|
Length = 99 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 28/172 (16%)
Query: 106 LGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ-NYFTRILEDNL 164
+ +VG NGIGKST LK+++G+L+P+ G T FR ++++ F++ D L
Sbjct: 538 IAMVGPNGIGKSTILKLISGELQPSSG------------TVFRSAKVRMAVFSQHHVDGL 585
Query: 165 KAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQR 224
P + ++ + G V +QK ++A L + + + + LSGG+ R
Sbjct: 586 DLSSNP--LLYMMRCFPG----VPEQK----LRAHLGSFGVTGNLALQPMYTLSGGQKSR 635
Query: 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQ-VVRSLLRPNSYVIVVEHD 275
A A + + I + DEPS++LD L A + +++ L+ V++V HD
Sbjct: 636 VAFAKITFKKPHILLLDEPSNHLD----LDAVEALIQGLVLFQGGVLMVSHD 683
|
Length = 718 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 56/224 (25%), Positives = 87/224 (38%), Gaps = 56/224 (25%)
Query: 81 KDTTHRY---GPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP 137
K+ T RY GP + L +P G+ + LVG +G GKST + ++ RF +
Sbjct: 4 KNVTFRYPGDGPPVLRDISLDIPA-GETVALVGPSGSGKSTLVNLIP--------RFYDV 54
Query: 138 P------DWQEILTYFRGSELQNY-------------FTRILEDNLKAIIKPQYVDH--I 176
D ++ R L + F + +N+ A +P
Sbjct: 55 DSGRILIDGHDV----RDYTLASLRRQIGLVSQDVFLFNDTVAENI-AYGRPGATREEVE 109
Query: 177 PKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE 236
A N + + + E + VI LSGG+ QR AIA +++
Sbjct: 110 EAARAANAHEFIMELPE-----------GYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158
Query: 237 IYMFDEPSSYLDVK-QRLKAAQVVRSL--LRPNSYVIVVEHDLS 277
I + DE +S LD + +RL V +L L N V+ H LS
Sbjct: 159 ILILDEATSALDTESERL----VQAALERLMKNRTTFVIAHRLS 198
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 45/203 (22%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--NN--------------PPDWQEI- 143
G V+ ++G++G GKST L+ + KP+ G N P D +++
Sbjct: 30 NAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQ 89
Query: 144 -----LTY-FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMK 197
L F+ L ++ T +LE+ ++A P +V + KA + +
Sbjct: 90 RLRTRLGMVFQHFNLWSHMT-VLENVIEA---PVHVLGVSKA------------EAIERA 133
Query: 198 ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD---VKQRLK 254
+ + + D LSGG+ QR AIA E+ +FDEP+S LD V + LK
Sbjct: 134 EKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK 193
Query: 255 AAQVVRSLLRPNSYVIVVEHDLS 277
V++ L ++VV H++
Sbjct: 194 ---VMQDLAEEGRTMVVVTHEMG 213
|
Length = 256 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 46/218 (21%), Positives = 85/218 (38%), Gaps = 33/218 (15%)
Query: 66 PFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVP---RPGQVLGLVGTNGIGKSTALKI 122
F + + L ++ Y N F + P+ + G+++ L+G NG GKST +
Sbjct: 316 AFPDWKTLEL-----RNVRFAYQDNAFHVG--PINLTIKRGELVFLIGGNGSGKSTLAML 368
Query: 123 LAGKLKPNLGR--FNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
L G +P G + P E L +R F+ + D + Q + KA
Sbjct: 369 LTGLYQPQSGEILLDGKPVSAEQLEDYRK-----LFSAVFSD---YHLFDQLLGPEGKAS 420
Query: 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVG--DLSGGELQRFAIAVVAVQNAEIY 238
+ + L + ++ + D LS G+ +R A+ + ++ +I
Sbjct: 421 PQLIEKWLQR---LELAHKT-------SLNDGRFSNLKLSTGQKKRLALLLALLEERDIL 470
Query: 239 MFDEPSSYLDVKQRLKAAQVVRSLL-RPNSYVIVVEHD 275
+ DE ++ D R + QV+ LL + + HD
Sbjct: 471 VLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD 508
|
Length = 546 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 42/213 (19%), Positives = 87/213 (40%), Gaps = 29/213 (13%)
Query: 351 KYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDS 406
YP + + + +GEF + G +G GK+T ++++ G +P V
Sbjct: 10 AYPGGREALRDVSFHIPKGEF---VFLT--GPSGAGKSTLLKLIYGEERPTRGKILVNGH 64
Query: 407 DV-EIPEFNVSYKPQKISPKFQSTVRHLLHQKIRD---------SYTHPQFVSDVMKPLL 456
D+ + + + ++I FQ R L + + + + V + L
Sbjct: 65 DLSRLKGREIPFLRRQIGVVFQD-FRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLD 123
Query: 457 IEQLMDQEVV---NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF 513
+ L + LSGGE QRVA+ + + L DEP+ LD + ++ ++++ F
Sbjct: 124 LVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPD---LSWEIMRLF 180
Query: 514 I-LHAKKTAFVV-EHDF-IMATYLADRVIVYEG 543
++ T ++ HD ++ + + +G
Sbjct: 181 EEINRLGTTVLMATHDLELVNRMRHRVLALEDG 213
|
Length = 223 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 32/189 (16%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVE---DSDVEIPEFNVSYKPQKISPKFQSTVR 431
+ + ++G G GKTT I +L P + D ++I + + I Q T
Sbjct: 30 ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILID-GIDIRDISRKSLRSMIGVVLQDT-- 86
Query: 432 HLLHQKIRD--SYTHPQFVSDVMKPL--------LIEQL---MDQEVV----NLSGGELQ 474
L I + P + + I +L D + NLS GE Q
Sbjct: 87 FLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ 146
Query: 475 RVALCLCLGKPADIYLIDEPSAYLDS--EQRIVAAKVIKRFILHAKKTAFVVEHDFIMAT 532
+A+ + + I ++DE ++ +D+ E+ I A +++ L +T+ ++ H ++T
Sbjct: 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEA--LEK--LMKGRTSIIIAHR--LST 200
Query: 533 YL-ADRVIV 540
AD+++V
Sbjct: 201 IKNADKILV 209
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-06
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 30/187 (16%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLG----------RFNNPPDWQ-EILTYFRGS 150
G+++ L+G +G GKST L + G L R + P Q +I F+ +
Sbjct: 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDA 86
Query: 151 ELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI 210
L + + + NL + +P ++GN R+ L+
Sbjct: 87 LLFPHLS--VGQNL--------LFALPATLKGNA--------RRNAANAALERSGLDGAF 128
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY-V 269
++ LSGG+ R A+ + + + DEP S LDV R + Q V S +R
Sbjct: 129 HQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPT 188
Query: 270 IVVEHDL 276
+ V HDL
Sbjct: 189 VQVTHDL 195
|
Length = 213 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 5e-06
Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 39/209 (18%)
Query: 104 QVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQ-------EILTYFRGSELQNYF 156
QV L+G +G GKST L+ FN D EI+ + + +
Sbjct: 43 QVTALIGPSGCGKSTFLRC-----------FNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 157 TRILEDNLKAIIKPQYVDHIPKAVQGNVG-----------QVLDQKDERDMKADLCTDLD 205
+E ++ + Q + PK++ NV +L+++ E ++ D
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-- 149
Query: 206 LNQVIDRNVGDL----SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRS 261
+V DR +GDL SGG+ QR IA + EI +FDEP+S LD +++ S
Sbjct: 150 --EVKDR-LGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELI-S 205
Query: 262 LLRPNSYVIVVEHDLSVLDYLSDFICCLY 290
L+ +++V H++ +SD+ +Y
Sbjct: 206 DLKNKVTILIVTHNMQQAARVSDYTAYMY 234
|
Length = 265 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 30/209 (14%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI- 159
PG++ GL+G NG GK+T +++ G L+P G +T+ G Q RI
Sbjct: 26 PPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGE----------ITWNGGPLSQEIKNRIG 75
Query: 160 -------LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDR 212
L + + +Y+ + + + + L ER L++ +
Sbjct: 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLER---------LEIVGKKTK 126
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD-VKQRLKAAQVVRSLLRPNSYVIV 271
+ +LS G Q+ + E+ + DEP S LD V L + L + +I
Sbjct: 127 KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVEL-LKDAIFELKEEGATIIF 185
Query: 272 VEHDLSVLDYLSDFICCLY-GKPGAYGVV 299
H + ++ L D + L G+ YG V
Sbjct: 186 SSHRMEHVEELCDRLLMLKKGQTVLYGTV 214
|
Length = 300 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 6e-06
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 32/190 (16%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP--------------PDWQEILTYFR 148
G+ +VG G GKST ++ + LKP G P + I F+
Sbjct: 33 GKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ 92
Query: 149 GSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQ 208
E Q + ED ++ + + PK + N+ +V ++ L DL ++
Sbjct: 93 FPESQ-----LFEDTVE-----REIIFGPKNFKMNLDEV------KNYAHRLLMDLGFSR 136
Query: 209 -VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL-LRPN 266
V+ ++ +SGG++++ AI + N +I + DEP++ LD + + + ++++SL N
Sbjct: 137 DVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN 196
Query: 267 SYVIVVEHDL 276
+I+V HD+
Sbjct: 197 KTIILVSHDM 206
|
Length = 286 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 41/182 (22%)
Query: 82 DTTHRYG--PNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF----- 134
D T Y P F L G+ + ++G +G GKST L ++AG L P G
Sbjct: 6 DITWLYHHLPMRFDLT----VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQ 61
Query: 135 ---NNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD-- 189
PP + + F+ E+NL + H+ V N+G L+
Sbjct: 62 DHTTTPPSRRPVSMLFQ------------ENNLFS--------HL--TVAQNIGLGLNPG 99
Query: 190 ---QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
+R+ + + + ++ R G LSGG+ QR A+A V+ I + DEP S
Sbjct: 100 LKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 247 LD 248
LD
Sbjct: 160 LD 161
|
Length = 232 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 7e-06
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGR---FNNPPDWQEILTYFRGSELQNYFTRI 159
G+ GL+G NG GKST ++L G + P+ G+ P + L + +
Sbjct: 30 GECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLD 89
Query: 160 LE----DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVG 215
E +NL ++ +Y + ++ + +L+ + KAD+ V
Sbjct: 90 PEFTVRENL--LVFGRYFGMSTREIEAVIPSLLEFA-RLESKADV------------RVA 134
Query: 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHD 275
LSGG +R +A + + ++ + DEP++ LD R + +RSLL +++ H
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 194
Query: 276 LSVLDYLSDFICCL 289
+ + L D +C L
Sbjct: 195 MEEAERLCDRLCVL 208
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 7e-06
Identities = 50/214 (23%), Positives = 88/214 (41%), Gaps = 47/214 (21%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
N L + EGE + +LG +G GK+T R+L GL KP VS++ Q
Sbjct: 29 NVSLSIEEGE-----TVGLLGRSGCGKSTLARLLLGLEKPAQ----------GTVSFRGQ 73
Query: 421 ---KISPKFQSTVRHLLHQKIRDSY-------THPQFVSDVMKPL--------------- 455
++ K + R + +DS T Q + + ++ L
Sbjct: 74 DLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAEL 133
Query: 456 -----LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVI 510
L + D+ LSGG+LQR+ + L + ++DE + LD + V +++
Sbjct: 134 LDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELL 193
Query: 511 KRFILHAKKTAFV-VEHDFIMATYLADRVIVYEG 543
++ + A TA++ + HD + RV V +
Sbjct: 194 RK-LQQAFGTAYLFITHDLRLVQSFCQRVAVMDK 226
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 26/194 (13%)
Query: 367 VEGEFTDSQIIVMLGENGTGKTTFIRMLAG---------LLKPDSVEDSDVEIPEFNVSY 417
+ + ++G +G+GK+T ++L G LL S++D D ++Y
Sbjct: 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552
Query: 418 KPQKISP-KFQSTV---------RHLLHQKIRDSYTHPQFVSDVMK-PLLIEQLMDQEVV 466
PQ+ P F ++ ++ +I + + D+ PL + + +E
Sbjct: 553 LPQE--PYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526
++SGG+ QR+AL L + + ++DE ++ LD+ I K++ + KT V H
Sbjct: 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDT---ITEKKIVNNLLNLQDKTIIFVAH 667
Query: 527 DFIMATYLADRVIV 540
+A +D++IV
Sbjct: 668 RLSVAK-QSDKIIV 680
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 51/174 (29%), Positives = 66/174 (37%), Gaps = 58/174 (33%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGR---------FNNPPDWQEI--------- 143
PG+V+ LVG NG GKST +K+L G + G FN P QE
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQEL 88
Query: 144 -----LTY----FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDER 194
LT F G E N F RI + A
Sbjct: 89 NLIPQLTIAENIFLGREFVNRFGRIDWKKMYA---------------------------- 120
Query: 195 DMKAD-LCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYL 247
+AD L L+L D+ VG+LS GE Q IA V +++ + DEP+ L
Sbjct: 121 --EADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDAL 172
|
Length = 501 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 7e-06
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 22/196 (11%)
Query: 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSY 417
T + L++ G ++ ++G G GKT+ I + G L E S V I +V+Y
Sbjct: 632 TLSDINLEIPVG-----SLVAIVGGTGEGKTSLISAMLGELSH--AETSSVVI-RGSVAY 683
Query: 418 KPQKISPKFQSTVRH--LLHQKIRDS-YTHPQFVSDVMKPLLIEQLMD-----QEVVNLS 469
PQ +S F +TVR L Y V+ + L + D + VN+S
Sbjct: 684 VPQ-VSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNIS 742
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA--KKTAFVVEHD 527
GG+ QRV++ + +DIY+ D+P + LD+ VA +V + KT +V +
Sbjct: 743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAH---VAHQVFDSCMKDELKGKTRVLVTNQ 799
Query: 528 FIMATYLADRVIVYEG 543
+ ++V EG
Sbjct: 800 LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 7e-06
Identities = 58/199 (29%), Positives = 84/199 (42%), Gaps = 32/199 (16%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVE---DSDVEIPEFNVS--YKPQK-ISPKFQS 428
+I ++G +G GKTT +R++ G + PD E D + IP + S Y +K +S FQS
Sbjct: 34 KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE-NIPAMSRSRLYTVRKRMSMLFQS 92
Query: 429 -------TVRHLLHQKIRDSYTHPQFV--SDVMKPLL------IEQLMDQEVVNLSGGEL 473
V + +R+ P + S VM L +LM E LSGG
Sbjct: 93 GALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSE---LSGGMA 149
Query: 474 QRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD----FI 529
+R AL + D+ + DEP D V K+I T VV HD
Sbjct: 150 RRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLS 209
Query: 530 MATY---LADRVIVYEGQP 545
+A + +AD+ IV G
Sbjct: 210 IADHAYIVADKKIVAHGSA 228
|
Length = 269 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 7e-06
Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 35/199 (17%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNNPPDWQEILTYFRGSELQNYFTR 158
+ G+ + L+G +G GKST ++L G P+ G + P L ++ + F R
Sbjct: 36 KSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEP-----LAKLNRAQ-RKAFRR 89
Query: 159 ----ILEDNLKAIIKPQYVDHIPKAVQGNVGQ------VLDQKDERDMKADLCTDLDLN- 207
+ +D++ A+ P+ K V+ + + LD+ + +++ +DL+
Sbjct: 90 DIQMVFQDSISAV-NPR------KTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD 142
Query: 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL--LRP 265
V+D+ LSGG+LQR +A ++ + DE S LD + A V+R L L+
Sbjct: 143 SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD---LVLQAGVIRLLKKLQQ 199
Query: 266 NS---YVIVVEHDLSVLDY 281
+ + HDL +++
Sbjct: 200 QFGTACLFIT-HDLRLVER 217
|
Length = 268 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 8e-06
Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 47/201 (23%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPD--------WQEILTYFRGSEL 152
G+++ +VG G GKS+ L L G+L+ G + P W +
Sbjct: 29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPW-----------I 77
Query: 153 QNYFTRILEDNLKAII-----KPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLN 207
QN + +N I+ + + + KA L+ D++ + D DL
Sbjct: 78 QN---GTIREN---ILFGKPFDEERYEKVIKACA------LE----PDLE--ILPDGDLT 119
Query: 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD--VKQRLKAAQVVRSLLRP 265
++ ++ + LSGG+ QR ++A +A+IY+ D+P S +D V + + + LL
Sbjct: 120 EIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI-FENCILGLLLN 177
Query: 266 NSYVIVVEHDLSVLDYLSDFI 286
N I+V H L +L + +D I
Sbjct: 178 NKTRILVTHQLQLLPH-ADQI 197
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 9e-06
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 23/186 (12%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF----NNPPDWQEILTYFR--GSELQN 154
G+V+ ++G +G GKST L+ L G +P+ G + D ++IL R G Q
Sbjct: 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQ 85
Query: 155 YFTRILEDNL---KAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVID 211
+ NL ++ + V P V+ L + + R+ +L + L D
Sbjct: 86 F-------NLFPHLTVL--ENVTLAPVKVKK-----LSKAEAREKALELLEKVGLADKAD 131
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
LSGG+ QR AIA + ++ +FDEP+S LD + + V++ L +I+
Sbjct: 132 AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMII 191
Query: 272 VEHDLS 277
V H++
Sbjct: 192 VTHEMG 197
|
Length = 240 |
| >gnl|CDD|226684 COG4231, COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 9e-06
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFE 68
V ++C C C +V +G IE P K A I C GCG CV+ CP
Sbjct: 572 YFVDEEKCT--GC-----GDC-IVLSGCPSIEPDPTFKKARIDPSSCNGCGSCVEVCPSF 623
Query: 69 AI 70
AI
Sbjct: 624 AI 625
|
Length = 640 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 9e-06
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 19/86 (22%)
Query: 211 DRNVGDLSGGELQRFAIA------VVAVQNAEIYMFDEPSSYL---DVKQRLKAAQVVRS 261
R+ G LSGGE QR +A + V +Y+ DEPS L D ++ ++ + +R
Sbjct: 476 SRSAGTLSGGEAQRIRLATQIGSGLTGV----LYVLDEPSIGLHQRDNERLIETLKRLRD 531
Query: 262 LLRPNSYVIVVEHDLSVL---DYLSD 284
L N+ VIVVEHD + D++ D
Sbjct: 532 L--GNT-VIVVEHDEDTIRAADHIID 554
|
Length = 935 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 17/193 (8%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE----DSDVEIPEFNVSYKP 419
LK + +F+ S + ++G NG GK+T L+GLL+P ++ + +
Sbjct: 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR 76
Query: 420 QKISPKFQSTVRHLLHQKIRDSYTHP------------QFVSDVMKPLLIEQLMDQEVVN 467
Q+++ FQ + + + I + V + + + + Q +
Sbjct: 77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQC 136
Query: 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527
LS G+ +RVA+ L A L+DEP+A LD R +I+R + + HD
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVI-ISSHD 195
Query: 528 FIMATYLADRVIV 540
+ ++D V V
Sbjct: 196 IDLIYEISDAVYV 208
|
Length = 271 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR 133
G+ +G++G NG GKST LK++AG KP G+
Sbjct: 51 YKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83
|
Length = 249 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGR---FNNPPDWQEILTYFRGSELQNYFTR 158
G+ GL+G NG GKST +++ G P+ G+ P + L R + +
Sbjct: 66 SGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQF--- 122
Query: 159 ILEDNLKAIIKPQYVDHIPKAVQGNV---GQVLDQKDERDMKADLCTDLD---LNQVIDR 212
DNL ++ V+ N+ G+ R+++A + + L+ L D
Sbjct: 123 ---DNLD----LEF------TVRENLLVFGRYFGMS-TREIEAVIPSLLEFARLESKADA 168
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVV 272
V DLSGG +R +A + + ++ + DEP++ LD R + +RSLL +++
Sbjct: 169 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 228
Query: 273 EHDLSVLDYLSDFICCLYG 291
H + + L D +C L
Sbjct: 229 THFMEEAERLCDRLCVLEA 247
|
Length = 340 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 27/199 (13%)
Query: 104 QVLGLVGTNGIGKSTALKILAGKLKPNLGR------FNNPPDWQEILTYFRGSELQNYFT 157
++ ++G +G GKST + G +K G + L S+ F
Sbjct: 53 KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFK 112
Query: 158 RILEDNLKAIIK-----PQYV---DHIPKAVQ-GNVGQVLDQKDERDMKADLCTDLDLNQ 208
L+ + P+Y D I K + G V + + + + + + L+
Sbjct: 113 E-----LRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD 167
Query: 209 -VIDRNVGDLSGGELQRFAIA-VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
++R+ LSGG+ +R AIA ++A+Q EI +FDEP++ LD K + Q++ N
Sbjct: 168 SYLERSPFGLSGGQKRRVAIAGILAIQP-EILIFDEPTAGLDPKGEHEMMQLILDAKANN 226
Query: 267 SYVIVV----EHDLSVLDY 281
V V+ EH L V D
Sbjct: 227 KTVFVITHTMEHVLEVADE 245
|
Length = 320 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 34/182 (18%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKP-NLGRFNNPPDWQEIL-----TYF-RGSELQ 153
RPG+ L + G +G GK++ L+ LAG L P GR + P D +L Y +G
Sbjct: 417 RPGERLLITGESGAGKTSLLRALAG-LWPWGSGRISMPAD-SALLFLPQRPYLPQG---- 470
Query: 154 NYFTRILEDNLK-AIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDR 212
L+ A+ P A + VL + DL LD DR
Sbjct: 471 ---------TLREALCYPNAAPDFSDAE---LVAVLHKVG----LGDLAERLDEEDRWDR 514
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVV 272
LSGGE QR A A + + + DE +S LD + + Q+++ L P++ VI V
Sbjct: 515 ---VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISV 570
Query: 273 EH 274
H
Sbjct: 571 GH 572
|
Length = 604 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL-LRPNSY 268
I ++ DLSGG+ QR IA ++ + DEP LD +K +++SL LR
Sbjct: 144 IHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELT 203
Query: 269 VIVVEHDLSVLDYLSDFICCLYG 291
+++V H+L + LSDF G
Sbjct: 204 MVIVSHNLHQVSRLSDFTAFFKG 226
|
Length = 261 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPAD--IYLIDEPSAYL---DSEQRIVAAKVIKRFIL 515
+ + LSGGE QR+ L +G +Y++DEPS L D+++ I K ++
Sbjct: 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLR---- 186
Query: 516 HAKKTAFVVEHD--FIMATYLADRVI 539
T VVEHD I A AD VI
Sbjct: 187 DLGNTVLVVEHDEDTIRA---ADHVI 209
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 13 SDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQI 72
D+ +C+ CKK CP L ++V PA E CIGCG C+ C + +
Sbjct: 209 DDKRGCPRCK-RCKKVCPEPI--PLWVQVCPAGIDIRDGLE-CIGCGRCIDACD-DDMLK 263
Query: 73 INLPKDL-DKDTTHRY-GPNTFKLHRLPVPRPGQVLGLVG 110
NLP L T R + G VL LV
Sbjct: 264 FNLPFGLIAYSTFMALPTIGMSACLRPRLCAYGGVLQLVS 303
|
Length = 386 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 50/155 (32%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPE-FNVSYKPQKISPKF-QSTVRHLL 434
+++ G +GTGK++ R LAGL + +PE ++ + PQ+ P T+R
Sbjct: 30 LLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLPQR--PYLPLGTLR--- 81
Query: 435 HQKIRDSYTHPQFVSDVMKPLLIEQLM---DQEVVNLSGGELQRVALC-LCLGKPADIYL 490
EQL+ D LSGGE QR+A L L KP
Sbjct: 82 -----------------------EQLIYPWDDV---LSGGEQQRLAFARLLLHKP-KFVF 114
Query: 491 IDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFV 523
+DE ++ LD SE R+ +L +
Sbjct: 115 LDEATSALDEESEDRLYQ-------LLKELGITVI 142
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 25/196 (12%)
Query: 104 QVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQN-YFTRILED 162
+V ++G +G GKST +K L + P + ++ +F QN Y RI +
Sbjct: 34 KVTAIIGPSGCGKSTFIKTLN-----RISELEGPVKVEGVVDFFG----QNIYDPRININ 84
Query: 163 NLKAIIKP--QYVDHIPKAVQGNVG-----------QVLDQKDERDMKADLCTDLDLNQV 209
L+ I Q + P ++ NV LD+ E +K ++
Sbjct: 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQ-EVKDK 143
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269
++++ LSGG+ QR IA ++ + DEP S LD +K +++ S LR +
Sbjct: 144 LNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHS-LRSELTI 202
Query: 270 IVVEHDLSVLDYLSDF 285
+V H++ +SDF
Sbjct: 203 AIVTHNMQQATRVSDF 218
|
Length = 259 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP 265
L+ VI N LSGG+ QR AIA ++++ I + DE +S LD + +A Q L+
Sbjct: 470 LDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE-RAIQAALDELQK 528
Query: 266 NSYVIVVEHDLS 277
N +V+ H LS
Sbjct: 529 NRTSLVIAHRLS 540
|
Length = 582 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 11/177 (6%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK--PDSVEDSD---VEIPEFNVSY- 417
L+ + E ++ ++G++G GKTT +RM+ G K + D VE+P+ VS
Sbjct: 399 LRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSAL 458
Query: 418 KPQKISPKFQS-TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRV 476
P + P+F T+ L K D + ++ L L ++ LS G+ +R
Sbjct: 459 IPGEYEPEFGEVTILEHLRSKTGDLNAAVEILN--RAGLSDAVLYRRKFSELSTGQKERA 516
Query: 477 ALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH--DFIMA 531
L L + ++ LIDE +A+LD + A+ I A T VV H + A
Sbjct: 517 KLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNA 573
|
Length = 593 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 207 NQVIDR---NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263
++V DR N +LSGG+ QR IA E+ + DEP+S LD LK +++ L
Sbjct: 136 DEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEE-L 194
Query: 264 RPNSYVIVVEHDLSVLDYLSDFICCLY 290
+ +I+V H++ +SD+ Y
Sbjct: 195 KEKYTIIIVTHNMQQAARVSDYTAFFY 221
|
Length = 252 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 27/196 (13%)
Query: 104 QVLGLVGTNGIGKSTALKILAG--KLKPNLGRFNNPPDWQEILTYFRGSEL--QNYFTRI 159
+V ++G +G GKST +K L +L P++ +IL +R + ++Y
Sbjct: 51 EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTG------KIL--YRDQNIFDKSYSVEE 102
Query: 160 LEDNLKAIIKPQYVDHIPKAVQGNVG-----------QVLDQKDERDMKADLCTDLDLNQ 208
L N+ + Q + PK++ NV + LD+ E+ ++ D +L
Sbjct: 103 LRTNVGMVF--QKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-ELKD 159
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY 268
+ N LSGG+ QR IA ++ + DEP+S LD LK ++V+ L+ +
Sbjct: 160 RLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE-LKKDYS 218
Query: 269 VIVVEHDLSVLDYLSD 284
+I+V H++ +SD
Sbjct: 219 IIIVTHNMQQAARISD 234
|
Length = 271 |
| >gnl|CDD|224065 COG1142, HycB, Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 2 SDRLTRIAIVSSDRCK-PKKCRQ----ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCI 56
S L RI ++ +D P C C + CPV G + + + EE CI
Sbjct: 33 SIFLPRIMVIKNDGESAPVVCHHCEDAPCAEVCPV---GAITRDD----GAVQVDEEKCI 85
Query: 57 GCGICVKKCPFEAIQIINLPKD 78
GC +CV CPF AI +++ P
Sbjct: 86 GCKLCVVACPFGAITMVSYPVA 107
|
Length = 165 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 40/209 (19%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQ----EILTYFRGSELQNYF 156
G++ ++G NG GKST K++AG P ++ +IL F+G +
Sbjct: 31 NKGEIHAIMGPNGSGKSTLSKVIAGH-----------PAYKILEGDIL--FKGESI-LDL 76
Query: 157 TRILEDNLKAIIKPQYVDHIPKAVQG-------NVGQVLDQKDERD---------MKADL 200
+L + QY IP N + E D K L
Sbjct: 77 EPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKL 136
Query: 201 CTDLDLNQV-IDRNVGD-LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV 258
+ ++ + RNV + SGGE +R I +A+ ++E+ + DE S LD+ A+
Sbjct: 137 ---VGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEG 193
Query: 259 VRSLLRPNSYVIVVEHDLSVLDYLS-DFI 286
+ L+ + +I++ H +LDY+ D++
Sbjct: 194 INKLMTSENSIILITHYQRLLDYIKPDYV 222
|
Length = 252 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 50/239 (20%), Positives = 93/239 (38%), Gaps = 56/239 (23%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDS----------VEDSDVEIP 411
LK + + +++ +LG +G GK+ + +L G+ +P S + VE P
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERP 75
Query: 412 EF--------NVSYKPQKI-----SPKFQSTVRH---LLHQKIRDSYTHPQFVSDVMKPL 455
+ +P+++ S K + +R ++ Q+ Y + +V++ L
Sbjct: 76 SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEAL 135
Query: 456 ----------------LIEQL-----MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494
LIE + + +LSGGE QRV L L K ++L DEP
Sbjct: 136 EEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEP 195
Query: 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH------DFI-MATYLADRVIVYEGQPS 546
+ LD + + ++ + + + + H D A +L + I EG P
Sbjct: 196 TGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPD 254
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 40/166 (24%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNN------PPDW----------QE 142
G+++GL+G NG GK+T ++ G ++P+ G+ ++ P QE
Sbjct: 28 NSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQE 87
Query: 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCT 202
+ FR +EDN+ A+++ + D + ++K+E D L
Sbjct: 88 A-SIFRKLT--------VEDNIMAVLEIREKD----------LKKAERKEELD---ALLE 125
Query: 203 DLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
+ + + D LSGGE +R IA N + + DEP + +D
Sbjct: 126 EFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 22/162 (13%)
Query: 359 QGNFKLKV---VEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIP---- 411
QG +L + VE + I ++GE+G+GK+T + +LAGL S E S V P
Sbjct: 18 QGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQM 77
Query: 412 --EFNVSYKPQKISPKFQS-----TVRHL-------LHQKIRDSYTHPQFVSDVMKPLLI 457
E + + + FQS T+ L L + + +++ L +
Sbjct: 78 DEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK-ALLEQLGL 136
Query: 458 EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499
+ +D LSGGE QRVAL D+ DEP+ LD
Sbjct: 137 GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 39/204 (19%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI--------PEFNV 415
L++ GE I+++ G +G+GKTT + ++ GL SV++ +++ E +
Sbjct: 26 LEINPGE-----IVILTGPSGSGKTTLLTLIGGL---RSVQEGSLKVLGQELYGASEKEL 77
Query: 416 SYKPQKISPKFQSTVRHLLH------QKIRDSYT-HPQFVSDVMKPLLIEQL-------- 460
+ I FQ H L Q ++ + P + L
Sbjct: 78 VQLRRNIGYIFQ---AHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDH 134
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQ-RIVAAKVIKRFILHAKK 519
+D NLSGG+ QRVA+ L + L DEP+A LDS+ R V +++++
Sbjct: 135 LDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV-VELMQKLAREQGC 193
Query: 520 TAFVVEHD-FIMATYLADRVIVYE 542
T +V HD I+ +ADR++ E
Sbjct: 194 TILIVTHDNRILD--VADRIVHME 215
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 23/195 (11%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF--RGSELQNYFTRIL 160
++ L+G +G GKST L+ L R N+ I RG + ++
Sbjct: 31 NEITALIGPSGCGKSTYLRTL--------NRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNV-----------GQVLDQKDERDMKADLCTDLDLNQV 209
+ + + Q + P ++ NV VLD+ E +K D ++
Sbjct: 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-EVKDH 141
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269
+ + LSGG+ QR IA V ++ + DEP+S LD + ++ LR +
Sbjct: 142 LHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE-LRDQYTI 200
Query: 270 IVVEHDLSVLDYLSD 284
I+V H + +SD
Sbjct: 201 ILVTHSMHQASRISD 215
|
Length = 252 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 30/194 (15%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKPQKISPKFQS-- 428
Q + ++GENG+GK+T +MLAG+++P S + D + ++ S++ ++I FQ
Sbjct: 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY--SFRSKRIRMIFQDPN 97
Query: 429 -------TVRHLLHQKIR--DSYTHPQFVSDVMKPL-LIEQLMDQEVVN---LSGGELQR 475
+ +L +R Q + + L ++ L D L+ G+ QR
Sbjct: 98 TSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQR 157
Query: 476 VALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK---TAFV-VEHDFIMA 531
VAL L I + DE A LD R + +L ++ +++ V M
Sbjct: 158 VALARALILRPKIIIADEALASLDMSMRS----QLINLMLELQEKQGISYIYVTQHIGMI 213
Query: 532 TYLADRVIV-YEGQ 544
+++D+V+V +EG+
Sbjct: 214 KHISDQVLVMHEGE 227
|
Length = 267 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 70/297 (23%), Positives = 104/297 (35%), Gaps = 53/297 (17%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--------NNPPDWQEILTYFRGSELQN 154
G+ + L+G +G GK+T L+I+AG + G PP ++ F Q+
Sbjct: 30 GEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF-----QS 84
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKADLCTDL-DLNQV 209
Y L NL V N+ L + E + DL L
Sbjct: 85 Y---ALFPNL--------------TVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGS 127
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSY 268
+ G LSGG+ QR A+A + + + DEP S LD + R +R L R
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT 187
Query: 269 VIVVEHDLSVLDYLSDFICCL-YGKPGAYGVVTLPFSV-REGINIFLAGFV------PTE 320
I+V HD ++D I + +G G P + R F+A FV P
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHGVIEQVGT---PQEIYRHPATPFVADFVGEVNWLPGT 244
Query: 321 NL---RFRDESLTFRVAETPQESAEEIETYAR---YKYPTMVKTQGNFKLKVVEGEF 371
R R LT A + + R + +V + EF
Sbjct: 245 RGGGSRARVGGLTLACAPGLAQPGASVRLAVRPEDIRVSPAGNAANLLLARVEDMEF 301
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 34/207 (16%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD----SVEDSDVEIPEFN-V 415
N +V GE I +LG NG GKTT RM+ GLL+P + + N +
Sbjct: 20 NISFEVPPGE-----IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRI 74
Query: 416 SYKP------QKISP----KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEV 465
Y P K++ K+ + ++ + +I+ + ++ L I +++
Sbjct: 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK------LQAWLERLEIVGKKTKKI 128
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK---KTAF 522
LS G Q++ + ++ ++DEP + LD V +++K I K T
Sbjct: 129 KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP----VNVELLKDAIFELKEEGATII 184
Query: 523 VVEHDFIMATYLADRV-IVYEGQPSVD 548
H L DR+ ++ +GQ +
Sbjct: 185 FSSHRMEHVEELCDRLLMLKKGQTVLY 211
|
Length = 300 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIPEFNVSYK--------------PQ 420
+ +LG +G GK+T R+L GL P S + + N + +
Sbjct: 41 VALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSIS 100
Query: 421 KISPKFQSTVRHLLHQKIR-----DSYTHPQFVSDVMKPL-LIEQLMDQEVVNLSGGELQ 474
++P + TVR ++ + +R D S++++ + L + ++D+ LSGG+LQ
Sbjct: 101 AVNP--RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQ 158
Query: 475 RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFV-VEHDFIMATY 533
RV L L + ++DE + LD + +++K+ + TA + + HD +
Sbjct: 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK-LQQQFGTACLFITHDLRLVER 217
Query: 534 LADRVIVYEG 543
RV+V +
Sbjct: 218 FCQRVMVMDN 227
|
Length = 268 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 46/217 (21%)
Query: 358 TQGNFKLKVVEG-EFTDS--QIIVMLGENGTGKTTFIRMLAGLLKPDS------VEDSDV 408
QG +L V+ + + + +V+ G +G+GK+T +R L PD E V
Sbjct: 18 QQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWV 77
Query: 409 EIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSD---VMKPLLI-------- 457
++ V+ +P+++ ++T+ ++ Q +R P+ VS V +PLL
Sbjct: 78 DL----VTAEPREVLEVRRTTIGYV-SQFLR---VIPR-VSALDVVAEPLLARGVPREVA 128
Query: 458 --------------EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503
E+L SGGE QRV + I L+DEP+A LD+ R
Sbjct: 129 RAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNR 188
Query: 504 IVAAKVIKRFILHAKKTAFV-VEHDFIMATYLADRVI 539
V ++I+ A+ A V + HD + +ADR++
Sbjct: 189 AVVVELIRE--AKARGAALVGIFHDEEVREAVADRLL 223
|
Length = 235 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 33/223 (14%)
Query: 346 TYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405
TYA+ K P K N L F +++ ++G G+GK+T I++ GL+ ++ +
Sbjct: 15 TYAK-KTPFEFKALNNTSLT-----FKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT 68
Query: 406 --SDVEIPEFNVSYKPQKISPK-------------FQSTVR--------HLLHQKIRDSY 442
D IP K K K FQ T+ +L K
Sbjct: 69 IVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYK 128
Query: 443 THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQ 502
P+ + V P E + + LSGG+ +RVAL + + ++DEP+ LD +
Sbjct: 129 KVPELLKLVQLP---EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKG 185
Query: 503 RIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV-YEGQ 544
+ +R KK +V H+ +AD VIV +EG+
Sbjct: 186 EEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGK 228
|
Length = 289 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 18/190 (9%)
Query: 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNL 164
V L+G G GK+T L+ L ++ + + D G + NY +LE
Sbjct: 49 VTSLMGPTGSGKTTFLRTL-NRMNDKVSGYRYSGD-----VLLGGRSIFNY-RDVLEFRR 101
Query: 165 KAIIKPQYVDHIPKAVQGNV------GQVLDQKDERDMKADLCTDLDLNQVIDRNVGD-- 216
+ + Q + P ++ NV +++ +K+ R + T++ L + + D
Sbjct: 102 RVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSP 161
Query: 217 --LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEH 274
LSGG+ Q +A N E+ + DEP+S LD K + +RSL + VI+V H
Sbjct: 162 FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLT-VIIVTH 220
Query: 275 DLSVLDYLSD 284
+L+ +SD
Sbjct: 221 NLAQAARISD 230
|
Length = 276 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 25/186 (13%)
Query: 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRFNN--PPDWQEILTYFRGSELQNYFTRILED 162
V L+G +G GKST ++ L R N+ P E Y G ++ + ++E
Sbjct: 31 VTALIGPSGCGKSTFIR--------TLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82
Query: 163 NLKAIIKPQYVDHIPKAVQGNVGQVL-----------DQKDERDMKADLCTDLDLNQVID 211
K + Q + PK++ NV L +++ E +KA D ++ +D
Sbjct: 83 RKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWD-EVKDKLD 141
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
++ LSGG+ QR IA + E+ + DEP S LD K ++ L Y IV
Sbjct: 142 KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL--KEDYTIV 199
Query: 272 -VEHDL 276
V H++
Sbjct: 200 IVTHNM 205
|
Length = 250 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 26/193 (13%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--------------LKPDSVEDSDVE 409
LK V + + + ++G +G GK+TFIR L + L + D V+
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 410 IPEF--NVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLL--------IEQ 459
+ E V QK +P +S ++ + F+ + ++ L ++
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD 138
Query: 460 LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK 519
+D+ + LSGG+ QR+ + + ++ L+DEP + LD +I + L
Sbjct: 139 KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK--LKEDY 196
Query: 520 TAFVVEHDFIMAT 532
T +V H+ AT
Sbjct: 197 TIVIVTHNMQQAT 209
|
Length = 250 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 56/194 (28%), Positives = 85/194 (43%), Gaps = 45/194 (23%)
Query: 380 LGENGTGKTTFIRMLAGLLKPDS--VEDSDVEI----PEF---NVSYKPQKISPKFQSTV 430
+G +G+GK+T R+L G+ P S V ++ E ++ Y PQ + F T+
Sbjct: 368 IGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE-LFDGTI 426
Query: 431 RHLLHQKI-R-DSYTHPQFV------SDVMKPLLIEQLMD--QEVV-----NLSGGELQR 475
+ I R P+ V + V + LI +L + LSGG+ QR
Sbjct: 427 A----ENIARFGEEADPEKVIEAARLAGVHE--LILRLPQGYDTRIGEGGATLSGGQRQR 480
Query: 476 VALCLCL-GKPADIYLIDEPSAYLDS--EQRIVAAKVIKRFILHAKK---TAFVVEHDFI 529
+AL L G P + L DEP++ LDS E + AA IL AK T V+ H
Sbjct: 481 IALARALYGDPFLVVL-DEPNSNLDSEGEAALAAA------ILAAKARGGTVVVIAHR-P 532
Query: 530 MATYLADRVIVYEG 543
A D+++V +
Sbjct: 533 SALASVDKILVLQD 546
|
Length = 580 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 27/189 (14%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF----------NNPPDWQEILTYFRGSE 151
G+++ +VG +G GKST + IL KP G + + + L R
Sbjct: 33 AGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDA-----DALAQLRREH 87
Query: 152 LQNYFTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA-DLCTDLDLNQV 209
F R L +L A Q V+ +P AV + + +R ++A +L L L
Sbjct: 88 FGFIFQRYHLLSHLTA---AQNVE-VP-AVYAGLE-----RKQRLLRAQELLQRLGLEDR 137
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269
++ LSGG+ QR +IA + ++ + DEP+ LD + ++ L V
Sbjct: 138 VEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTV 197
Query: 270 IVVEHDLSV 278
I+V HD V
Sbjct: 198 IIVTHDPQV 206
|
Length = 648 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 23/198 (11%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKP 419
L V + ++G G+GK+T ++ L GLL+P S + + + + N KP
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 420 --QKISPKFQSTVRHLLHQKI-RDSYTHPQ-F-VSDV--------MKPL--LIEQLMDQE 464
+K+ FQ L + + +D P F VS+ M L L E+L+ +
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS 142
Query: 465 VVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK--TAF 522
LSGG+++RVA+ L ++ ++DEP+A LD + R ++ + LH +K T
Sbjct: 143 PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYK--LHKEKGLTTV 200
Query: 523 VVEHDFIMATYLADRVIV 540
+V H A AD+++V
Sbjct: 201 LVTHSMEDAARYADQIVV 218
|
Length = 290 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 31/205 (15%)
Query: 360 GNFK-LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDSVEDSDVEIPEFNVS 416
G+F LK + E + ++ +G +G GK+TF+R+ + L P + + ++ I N+
Sbjct: 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73
Query: 417 YKPQKIS----------------PK--FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLL-- 456
K ++ PK F++ L ++D+ Q V + +K
Sbjct: 74 DKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALW 133
Query: 457 --IEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI 514
++ + + LSGG+ QR+ + + + L+DEP++ LD I AKV + I
Sbjct: 134 DEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP---ISTAKV-EELI 189
Query: 515 LHAKK--TAFVVEHDFIMATYLADR 537
KK T +V H+ A ++D+
Sbjct: 190 HELKKDYTIVIVTHNMQQAARVSDK 214
|
Length = 250 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 30/200 (15%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRML--AGLLKPDSVEDSDVEIPEFNVSYKP-- 419
L V +F ++I ++G +G+GK+T +R + L P+ + N+ Y P
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI-YSPRT 79
Query: 420 ------QKISPKFQ-----------STVRHLLHQKIRDSYTHPQFVSDVMKPLLI-EQLM 461
++I FQ + V L + I+D + V +K I +++
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK 139
Query: 462 DQ---EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR-FILHA 517
D+ + LSGG+ QRV + L I L+DEP++ LD I A K+ + L
Sbjct: 140 DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDP---ISAGKIEETLLGLKD 196
Query: 518 KKTAFVVEHDFIMATYLADR 537
T +V A+ ++DR
Sbjct: 197 DYTMLLVTRSMQQASRISDR 216
|
Length = 252 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (109), Expect = 2e-05
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 23/194 (11%)
Query: 104 QVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDW--QEILTYFRGSELQNYFTRILE 161
+V +G +G GKST L+ NL + N+ + E YF G+ ++ LE
Sbjct: 109 KVTAFIGPSGCGKSTFLR--------NLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLE 160
Query: 162 DNLK---AIIKP-----QYVDHI---PKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI 210
+ KP D++ P+ N ++L++ E+ +K+ D ++ +
Sbjct: 161 LRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-EVKDDL 219
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
D+ LSGG+ QR IA E+ + DEP+S LD K +++ L + S +I
Sbjct: 220 DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYS-II 278
Query: 271 VVEHDLSVLDYLSD 284
+V H ++ +SD
Sbjct: 279 IVTHSMAQAQRISD 292
|
Length = 329 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 61/196 (31%), Positives = 94/196 (47%), Gaps = 22/196 (11%)
Query: 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSY 417
T N L V G + ++G G GKT+ I + G L P D+ V I V+Y
Sbjct: 632 TLSNINLDVPVGSL-----VAIVGSTGEGKTSLISAMLGELPP--RSDASVVI-RGTVAY 683
Query: 418 KPQKISPKFQSTVR-HLLHQKIRDS--YTHPQFVSDVMKPLLIEQLMDQ-EV----VNLS 469
PQ +S F +TVR ++L D Y V+ + L + D E+ VN+S
Sbjct: 684 VPQ-VSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNIS 742
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSE-QRIVAAKVIKRFILHAKKTAFVVEHDF 528
GG+ QRV++ + +D+Y+ D+P + LD+ R V K IK + KT +V +
Sbjct: 743 GGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQL 800
Query: 529 IMATYLADRVI-VYEG 543
+ + DR+I V+EG
Sbjct: 801 HFLSQV-DRIILVHEG 815
|
Length = 1622 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHD 275
LSGG+ QR IA+ ++ + DEP++ LDV + + +++ L ++ + HD
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD 217
Query: 276 LSVLDYLSDFICCLY 290
L ++ +D + +
Sbjct: 218 LGIVRKFADRVYVMQ 232
|
Length = 534 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 30/155 (19%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPE-FNVSYKP 419
+ KL +V G I +LG NG GK+T I++LAG L P S ++ + + + Y
Sbjct: 330 SIKLNLVPGSR-----IGLLGRNGAGKSTLIKLLAGELAPVS---GEIGLAKGIKLGYFA 381
Query: 420 QKISPKF----QSTVRHL-------LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNL 468
Q +F +S ++HL L QK+RD F D + +E
Sbjct: 382 QH-QLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVT---------EETRRF 431
Query: 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503
SGGE R+ L L + + ++ L+DEP+ +LD + R
Sbjct: 432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMR 466
|
Length = 638 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 23/208 (11%)
Query: 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE----D 405
Y Y G LK + ++ +LG NG GK+T + L G+LKP S
Sbjct: 13 YNYS-----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG 67
Query: 406 SDVEIPEFNVSYKPQKISPKFQSTVRHL-------------LHQKIRDSYTHPQFVSDVM 452
++ + + + FQ L ++ K+ + + V + +
Sbjct: 68 KPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-VDNAL 126
Query: 453 KPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512
K IE L D+ LS G+ +RVA+ L + ++DEP+A LD K++
Sbjct: 127 KRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVE 186
Query: 513 FILHAKKTAFVVEHDFIMATYLADRVIV 540
T + HD + D V V
Sbjct: 187 MQKELGLTIIIATHDIDIVPLYCDNVFV 214
|
Length = 283 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 3e-05
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 43/200 (21%)
Query: 104 QVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDN 163
Q+ +G NG GK+T L IL G L P G T G + +E N
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPTSG------------TVLVGG-------KDIETN 997
Query: 164 LKAIIK-----PQY---------VDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQV 209
L A+ + PQ+ +HI Q G+ ++ + +M+A L D L+
Sbjct: 998 LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK-GRSWEEA-QLEMEAML-EDTGLHHK 1054
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL---RPN 266
+ DLSGG ++ ++A+ V +A++ + DEP+S +D R + + LL R
Sbjct: 1055 RNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSR----RSIWDLLLKYRSG 1110
Query: 267 SYVIVVEHDLSVLDYLSDFI 286
+I+ H + D L D I
Sbjct: 1111 RTIIMSTHHMDEADLLGDRI 1130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 34/202 (16%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAG--------------LLKPD-------S 402
LK + + Q+ ++G +G GK+TF+R +L PD
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 403 VEDSDVEIPEFNVSYKPQKISPK--FQSTVRHLLHQKIRDSYTHPQFVSDVMK-PLLIEQ 459
V+ +V + V KP PK F++ L + ++ + V + ++ L ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPF-PKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE 150
Query: 460 LMD---QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI-- 514
+ D NLSGG+ QR+ + L +I L DEP++ LD +A I+ I
Sbjct: 151 VKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDP----IATASIEELISD 206
Query: 515 LHAKKTAFVVEHDFIMATYLAD 536
L K T +V H+ A ++D
Sbjct: 207 LKNKVTILIVTHNMQQAARVSD 228
|
Length = 265 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 3e-05
Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 32/119 (26%)
Query: 468 LSGGELQRVALCLCLGKPAD--IYLIDEPSAYL---DSEQRIVAAKVIKRFILHAKKTAF 522
LSGGE QR+ L +G +Y++DEPS L D+E+ I K ++ T
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD----LGNTVI 537
Query: 523 VVEHD--FIMATYLADRV-------------IVYEGQPSVDCVANAPQSLLTGMNLFLS 566
VVEHD I A AD + IV EG + + + P+S LTG +LS
Sbjct: 538 VVEHDEDTIRA---ADHIIDIGPGAGEHGGEIVAEG--TPEELLANPES-LTG--QYLS 588
|
Length = 935 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 42/176 (23%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN------------NPPDWQEILTYFRG 149
+ + LVG NG GKST +KIL G++ + GR +PP E Y
Sbjct: 28 DNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFV 87
Query: 150 SE--------LQNYF-------TRILEDNLKAIIKPQYV-DHIPKAVQGNVGQVLDQKDE 193
+E L+ Y T E NL + K Q DH L Q +
Sbjct: 88 AEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDH----------HNLWQLEN 137
Query: 194 RDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV 249
R ++ L L+ D + LSGG L++ A+ V N ++ + DEP+++LD+
Sbjct: 138 R--INEVLAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDI 189
|
Length = 635 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 29/189 (15%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKPQKISPKFQSTV 430
Q + ++GENG+GK+T +MLAG+++P S ++D + ++ SY+ Q+I FQ
Sbjct: 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY--SYRSQRIRMIFQDPS 97
Query: 431 RHL-LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVN--------------LSGGELQR 475
L Q+I P ++ ++P E+ + + + L+ G+ QR
Sbjct: 98 TSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQR 157
Query: 476 VALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI-LHAKKT---AFVVEHDFIMA 531
+ L L + + DE A LD R +++I + L K+ +V +H M
Sbjct: 158 LGLARALILRPKVIIADEALASLDMSMR---SQLINLMLELQEKQGISYIYVTQH-LGMM 213
Query: 532 TYLADRVIV 540
+++D+V+V
Sbjct: 214 KHISDQVLV 222
|
Length = 267 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 60/244 (24%), Positives = 100/244 (40%), Gaps = 69/244 (28%)
Query: 77 KDLDKDTTHRYGPNTFKLHRL----PVP---RPGQVLGLVGTNGIGKSTALKILAGKLKP 129
++L K T RY F+ + P+ R GQ L ++G NG GKST K+LAG ++P
Sbjct: 8 RNLSK--TFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP 65
Query: 130 NLGRFNNPPDWQEILTYFRGSELQNYFTR------ILEDNLKAIIKPQYVDHIPKAVQGN 183
G E+L +Y R I +D ++ Q
Sbjct: 66 TSG---------ELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ-----------R 105
Query: 184 VGQVLDQKDERDMKADLCTDLD-------LNQVIDRNVG-----------DLSGGELQRF 225
+ Q+L D L TDL+ + + + R VG L+ G+ QR
Sbjct: 106 ISQIL------DFPLRLNTDLEPEQREKQIIETL-RQVGLLPDHASYYPHMLAPGQKQRL 158
Query: 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN-----SYVIVVEHDLSVLD 280
+A + ++ + DE + LD+ R +Q++ +L SY+ V +H L ++
Sbjct: 159 GLARALILRPKVIIADEALASLDMSMR---SQLINLMLELQEKQGISYIYVTQH-LGMMK 214
Query: 281 YLSD 284
++SD
Sbjct: 215 HISD 218
|
Length = 267 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 26/214 (12%)
Query: 87 YGPNTFKLHRLPVPRP-GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145
+G L + + P GQ+ +VG G GKS+ L + G+++ G+ + W
Sbjct: 10 WGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH----WSNKNE 65
Query: 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNV--GQVLDQKDERDMKADLCT- 202
E R A KP ++ V+ N+ G + K D C+
Sbjct: 66 SEPSFEATRSRNRY--SVAYAAQKPWLLN---ATVEENITFGSPFN-KQRYKAVTDACSL 119
Query: 203 --DLDL------NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV--KQR 252
D+DL ++ +R + +LSGG+ QR +A QN I D+P S LD+
Sbjct: 120 QPDIDLLPFGDQTEIGERGI-NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 253 LKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFI 286
L +++ L +++V H L L + +D+I
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPH-ADWI 211
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 3e-05
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAK--VIKRFILHAKK-TAFVV 524
LSGG Q+V L L + + ++DEP+ +D V AK + + A A ++
Sbjct: 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVD-----VGAKAEIYRLIRELADAGKAVLL 159
Query: 525 ---EHDFIMATYLADRVIV-YEGQ 544
E D ++ L DR++V YEG+
Sbjct: 160 ISSELDELLG--LCDRILVMYEGR 181
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263
+ L + +R G+L+ G+ +R IA V EI M DEP++ L+ K+ + +++ L
Sbjct: 141 VGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELR 200
Query: 264 RP-NSYVIVVEHDLSVLDYLSDFICCL-YGKPGAYG 297
N V+++EHD+ ++ +SD I + G P A G
Sbjct: 201 NEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236
|
Length = 255 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 30/208 (14%)
Query: 103 GQVLGLVGTNGIGKS-TALKILA-----GKLKPNLGRFNNPPDWQEILTYFR----GSEL 152
G+V+G+VG +G GKS ++L I+ G++ FN D Q I R G+E+
Sbjct: 33 GEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ-DLQRISEKERRNLVGAEV 91
Query: 153 QNYFTRILEDNLKAIIKPQYVD--HIPKAVQGNVGQVLDQKDERDMKADLCTDL---DLN 207
I +D + ++ P Y I +A++ V Q ++K R DL + D
Sbjct: 92 ----AMIFQDPMTSL-NPCYTVGFQIMEAIK--VHQGGNKKTRRQRAIDLLNQVGIPDPA 144
Query: 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL---- 263
+D LSGG QR IA+ ++ + DEP++ LDV + AQ++ LL
Sbjct: 145 SRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQ---AQIIELLLELQQ 201
Query: 264 RPNSYVIVVEHDLSVLDYLSDFICCLYG 291
+ N ++++ HDL+++ + I +Y
Sbjct: 202 KENMALVLITHDLALVAEAAHKIIVMYA 229
|
Length = 326 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 27/173 (15%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYKPQKISPKFQSTVRH 432
Q + ++G G GKTT I +L + P + ++I + I+ FQ
Sbjct: 362 QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDA--G 419
Query: 433 LLHQKIRD-------------------SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGEL 473
L ++ IR+ + F+ L+ + LSGGE
Sbjct: 420 LFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD--TLVGERGNRLSGGER 477
Query: 474 QRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526
QR+A+ + K A I ++DE ++ LD E I L +T F++ H
Sbjct: 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAID--ALRKNRTTFIIAH 528
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 31/192 (16%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNNPPDWQEILTYFRGSELQNYFTRI 159
G+ L ++G +G GKST +++ G P G R + G++L+ +
Sbjct: 343 AGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLD-------------GADLKQWDRET 389
Query: 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA--------DLCTDLDLNQVID 211
++ + PQ V+ P V N+ + + D + +L L L D
Sbjct: 390 FGKHIGYL--PQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELI--LRLPDGYD 445
Query: 212 RNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNS 267
+G LSGG+ QR A+A + ++ + DEP+S LD + A +++L
Sbjct: 446 TVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGI 505
Query: 268 YVIVVEHDLSVL 279
V+V+ H S+L
Sbjct: 506 TVVVITHRPSLL 517
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 4e-05
Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 35/202 (17%)
Query: 365 KVVEGEFTD---SQIIVMLGENGTGKTTFIRML---AGLLKPDSVEDSDVEI-------P 411
K +EG D +++ ++G +G GK+TFI+ L + L P VE V+ P
Sbjct: 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVE-GVVDFFGQNIYDP 79
Query: 412 EFNVSYKPQKISPKFQS------TVRHLLHQKIRDSYTHPQF-VSDVMKPLL-------- 456
N++ ++I FQ ++ + +R S PQ + ++++ L
Sbjct: 80 RININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQE 139
Query: 457 IEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI-- 514
++ +++ + LSGG+ QR+ + L + L+DEP + LD +A ++ I
Sbjct: 140 VKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDP----IATMKVEELIHS 195
Query: 515 LHAKKTAFVVEHDFIMATYLAD 536
L ++ T +V H+ AT ++D
Sbjct: 196 LRSELTIAIVTHNMQQATRVSD 217
|
Length = 259 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 42/166 (25%)
Query: 354 TMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE---DSDVEI 410
+VK +F +V G+ I ++G NG GKTT ++++ G L+ DS + +E+
Sbjct: 333 QLVK---DFSAQVQRGD-----KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEV 384
Query: 411 PEF---------------NVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPL 455
F N++ Q++ + RH+L ++D HP+ M P
Sbjct: 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRP--RHVL-GYLQDFLFHPK---RAMTP- 437
Query: 456 LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501
V LSGGE R+ L KP+++ ++DEP+ LD E
Sbjct: 438 ---------VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVE 474
|
Length = 635 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-05
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 381 GENGTGKTTFIRMLAGLLKPDSVE--------DSDVEIPEFNVSYKPQK--ISPKFQSTV 430
G NG GKTT ++++AGLL P+ E D+ + + + + I+P T+
Sbjct: 34 GSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYL--TL 91
Query: 431 RHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYL 490
R I S ++++ + +E L+D LS G+ ++VAL A ++L
Sbjct: 92 RENCLYDIHFSPGAVG-ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWL 150
Query: 491 IDEPSAYLD 499
+DEP LD
Sbjct: 151 LDEPLVALD 159
|
Length = 200 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 205 DLNQVIDRNVGDLSGGE------LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA-AQ 257
+ N + G SGGE + R A+A N I DEP++ LD + ++ A+
Sbjct: 104 ESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAE 163
Query: 258 VVRSLLR-PNSYVIVVEHDLSVLDYLSDFIC 287
++ N +IV+ HD ++D
Sbjct: 164 IIEERKSQKNFQLIVITHDEELVDAADHIYR 194
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 46/196 (23%), Positives = 85/196 (43%), Gaps = 23/196 (11%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL--TYFRGSELQNYFTRI 159
QV L+G +G GKST L+ L R N+ +I G ++ +
Sbjct: 28 ENQVTALIGPSGCGKSTFLR--------TLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79
Query: 160 LEDNLKAIIKPQYVDHIPKAVQGNVG-----------QVLDQKDERDMKADLCTDLDLNQ 208
+ + + Q + P ++ NV + LD+ E+ +K D ++
Sbjct: 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-EVKD 138
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY 268
+ ++ LSGG+ QR IA E+ + DEP+S LD LK ++++ L+ +
Sbjct: 139 RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE-LKKDYT 197
Query: 269 VIVVEHDLSVLDYLSD 284
+++V H++ +SD
Sbjct: 198 IVIVTHNMQQASRISD 213
|
Length = 250 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 41/177 (23%), Positives = 82/177 (46%), Gaps = 10/177 (5%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSEL-QNYFTRI 159
RPG+ GL+G NG GK+T K+L G G + + ILT S++ QN
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTTVTSG--DATVAGKSILTNI--SDVHQNMGYCP 2018
Query: 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219
D + ++ + ++ ++G + +++ +++ L L+ DR G SG
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQS-----LGLSLYADRLAGTYSG 2073
Query: 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
G ++ + A+ + + + DEP++ +D + R + S++R V++ H +
Sbjct: 2074 GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131234 TIGR02179, PorD_KorD, 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-05
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEA 69
+V ++C KC+ C CP + I+ + I + C GCGIC CP +A
Sbjct: 21 VVDKEKCI--KCK-NCWLYCP-----EGAIQEDEGGFVG-IDYDYCKGCGICANVCPVKA 71
Query: 70 IQII 73
I+++
Sbjct: 72 IEMV 75
|
A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins. Length = 78 |
| >gnl|CDD|235347 PRK05113, PRK05113, electron transport complex protein RnfB; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 43 PAAKIAFISEELCIGCGICVKKCPFEAI 70
PA K+AFI E+ CIGC C++ CP +AI
Sbjct: 104 PARKVAFIDEDNCIGCTKCIQACPVDAI 131
|
Length = 191 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 57/234 (24%), Positives = 103/234 (44%), Gaps = 40/234 (17%)
Query: 336 TPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA 395
P+ A IET + T K N +K+++ + I ++G +G GK+TF+R L
Sbjct: 1 MPKNEAI-IETENLNLFYTDFKALNNINIKILK-----NSITALIGPSGCGKSTFLRTLN 54
Query: 396 GLLKPDSVEDSDVE---IPE--------FNVSYKPQKISPKFQSTVRHLLH--------- 435
+ D VE +E I E F++ +KI FQ+ L+
Sbjct: 55 RM--NDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGP 112
Query: 436 --QKIRDSYTHPQFV-SDVMKPLLIEQLMDQ---EVVNLSGGELQRVALCLCLGKPADIY 489
+D + V + K L ++ D+ ++LSGG+ QR+ + L ++
Sbjct: 113 KIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVI 172
Query: 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKK--TAFVVEHDFIMATYLADRVIVY 541
L+DEP++ LD ++ I+ I++ K+ T +V H+ A ++DR +
Sbjct: 173 LMDEPTSALDP----ISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFF 222
|
Length = 254 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 49/207 (23%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEI--PEFNVS- 416
L+V +GE + +LG NG GKTT ++ L GLL S ++ D+ P
Sbjct: 21 LEVPKGE-----VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75
Query: 417 ---YKPQ--KISPKFQSTVRHLL----------HQKIRDSYTHPQFVSDVMKPLLIEQLM 461
Y PQ +I P+ TV L +KI P + + + P+L ++++
Sbjct: 76 GIAYVPQGREIFPRL--TVEENLLTGLAALPRRSRKI------PDEIYE-LFPVL-KEML 125
Query: 462 DQEVVNLSGGELQRVALCLCL-GKPADIYLIDEPSAYLDSE--Q-RIVA--AKVIKRFIL 515
+ +LSGG+ Q++A+ L +P + L+DEP +E Q I+ +VI+R
Sbjct: 126 GRRGGDLSGGQQQQLAIARALVTRPK-LLLLDEP-----TEGIQPSIIKDIGRVIRRLRA 179
Query: 516 HAKKTAFVVEHDFIMATYLADRVIVYE 542
+VE A LADR V E
Sbjct: 180 EGGMAILLVEQYLDFARELADRYYVME 206
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 31/203 (15%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT---R 158
G+++ ++G +G GK+T L ++AG + P+ G E RG QN
Sbjct: 30 SGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWL 89
Query: 159 ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLS 218
+ DN+ ++ + I KA + R++ + + L + + LS
Sbjct: 90 NVIDNVAFGLQ---LRGIEKAQR------------REIAHQMLALVGLEGAEHKYIWQLS 134
Query: 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR-------LKAAQVVRSLLRPNSYVIV 271
GG QR IA ++ + DEP LD R L Q V++
Sbjct: 135 GGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ------ETGKQVLL 188
Query: 272 VEHDLSVLDYLSDFICCLYGKPG 294
+ HD+ +L+ + L PG
Sbjct: 189 ITHDIEEALFLATRLVVLSPGPG 211
|
Length = 259 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 217 LSGGELQRFAIAVV----AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVV 272
LSGGE + A+A++ +++ +Y+ DE LD + A+ + L + VIV+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 273 EHDL 276
H
Sbjct: 138 THLP 141
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 38/192 (19%)
Query: 375 QIIVMLGENGTGKTTFIRML-------AGLLKPDSVEDSDVEIPEF--NVSYKPQKISPK 425
+ + ++G +G+GK+T +R+L +G + D + +V + + PQ +
Sbjct: 28 KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQD-TVL 86
Query: 426 FQSTVRHLLHQKI---RDSYTHPQFVSDVMKPLLIEQLM------DQEV----VNLSGGE 472
F T+ + I R T + + + +++M D V + LSGGE
Sbjct: 87 FNDTIGY----NIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGE 142
Query: 473 LQRVALCLCLGKPADIYLIDEPSAYLDS--EQRIVAAKVIKRFILHAKKTAFVVEHDF-- 528
QRVA+ + K I L+DE ++ LD+ E+ I AA ++ + +T V+ H
Sbjct: 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA--LRD--VSKGRTTIVIAHRLST 198
Query: 529 IMATYLADRVIV 540
I+ AD++IV
Sbjct: 199 IVN---ADKIIV 207
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525
V LSGG+ QR+A+ L K I ++DE ++ LD+E + ++R L +T FV+
Sbjct: 137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALER--LMKNRTTFVIA 194
Query: 526 HDF--IMATYLADRVIVYE 542
H I ADR++V E
Sbjct: 195 HRLSTIEN---ADRIVVLE 210
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 60/220 (27%), Positives = 98/220 (44%), Gaps = 38/220 (17%)
Query: 91 TFKLH-----RLPVPR-------PGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNN 136
TF LH RLPV R G+ + L G +G GKST L+ L P+ G +
Sbjct: 13 TFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRH 72
Query: 137 PPDWQEILTYFRGSELQNYFTRILEDNLKAI-IKPQYVDHIPK------AVQGNVGQVLD 189
+W +++T +E + +LE I Q++ IP+ + + + +
Sbjct: 73 EGEWVDLVT----AEPR----EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP 124
Query: 190 QKDERDMKADLCTDLDLNQVI-DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
++ R ADL T L+L + + SGGE QR IA + + I + DEP++ LD
Sbjct: 125 REVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184
Query: 249 VKQRLKAAQVVRSLLRP----NSYVIVVEHDLSVLDYLSD 284
R VV L+R + ++ + HD V + ++D
Sbjct: 185 ATNR----AVVVELIREAKARGAALVGIFHDEEVREAVAD 220
|
Length = 235 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 34/216 (15%)
Query: 87 YGPN-TFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI-- 143
YG N K LP+P QV L+G +G GKST L+ L R N+ + +I
Sbjct: 13 YGENQALKSINLPIPAR-QVTALIGPSGCGKSTLLRCL--------NRMNDLIEGVKITG 63
Query: 144 LTYFRGSEL-QNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVG-----------QVLDQK 191
G ++ N L + + Q + P ++ NV +VLD+
Sbjct: 64 KLTMDGEDIYGNIDVADLRIKVGMVF--QKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV 121
Query: 192 DERDMKADLCTDLDLNQVIDR---NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
ER ++ D +V DR + LSGG+ QR IA ++ + DEP+S LD
Sbjct: 122 VERSLRGAALWD----EVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177
Query: 249 VKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSD 284
K +++ L+ N +++V H + +SD
Sbjct: 178 PIATHKIEELMEE-LKKNYTIVIVTHSMQQARRISD 212
|
Length = 249 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 51/216 (23%), Positives = 89/216 (41%), Gaps = 45/216 (20%)
Query: 335 ETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRML 394
+ +ES E+I + Y +K + L V+G + ++G +G GKTT + +L
Sbjct: 750 DMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVL 809
Query: 395 AGLL---------------KPDS--------VEDSDVEIPEFNVSYKPQKISPKFQSTVR 431
A + DS V+ D+ +P V + S +F + +R
Sbjct: 810 AERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV-----RESLRFSAYLR 864
Query: 432 HLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGEL---QRVALCLCL---GKP 485
+ ++V +V+K L +E D VV + G L QR L + + KP
Sbjct: 865 QPKSVSKSEKM---EYVEEVIKLLEMESYADA-VVGVPGEGLNVEQRKRLTIGVELVAKP 920
Query: 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521
+ +DEP++ LDS+ A I + + +K A
Sbjct: 921 KLLLFLDEPTSGLDSQ----TAWSICKLM---RKLA 949
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 8/169 (4%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIP--EFNVSYKPQKISP--KF 426
+++V+LG +G GKTT + ++AG + ++ VE P E V ++ + + P
Sbjct: 28 ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNV 87
Query: 427 QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPA 486
Q V L + + ++K + +E + + LSGG+ QRV + L
Sbjct: 88 QDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANP 147
Query: 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLA 535
+ L+DEP LD+ R ++ + K ++ HD A ++A
Sbjct: 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMA 196
|
Length = 255 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 14/175 (8%)
Query: 108 LVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAI 167
L+G NG GKST K++ G L P+ D G L + + + +
Sbjct: 38 LIGHNGSGKSTISKLINGLLLPD--------DNPNSKITVDGITLTAKTVWDIREKVGIV 89
Query: 168 IKPQYVDHIPKAVQGNVGQVLDQKD--ERDMK---ADLCTDLDLNQVIDRNVGDLSGGEL 222
+ + V +V L+ + +M D+ D+ + ID +LSGG+
Sbjct: 90 FQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQK 149
Query: 223 QRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV-VEHDL 276
QR AIA + +I + DE +S LD + + +++R L + N+ ++ + HD+
Sbjct: 150 QRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI 204
|
Length = 282 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 22/198 (11%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G+ L L+G +G GK+T +K++ ++P G + G +++ L
Sbjct: 27 GEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-----------FIDGEDIREQDPVELRR 75
Query: 163 NLKAIIKPQYVDHIP-KAVQGNVGQVLD----QKDERDMKAD---LCTDLDLNQVIDRNV 214
+ +I Q + P V+ N+ V K++ +AD LD + DR
Sbjct: 76 KIGYVI--QQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYP 133
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVE 273
+LSGG+ QR +A + + + DEP LD R + + + L + ++ V
Sbjct: 134 HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVT 193
Query: 274 HDLSVLDYLSDFICCLYG 291
HD+ L+D I +
Sbjct: 194 HDIDEAFRLADRIAIMKN 211
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-05
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
LSGG+ QR AIA E+ +FDEP+S LD + + +R L + +++V H++
Sbjct: 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204
Query: 277 S 277
S
Sbjct: 205 S 205
|
Length = 250 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 7e-05
Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 31/174 (17%)
Query: 81 KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF------ 134
++ +GP F + G+ L + G NG GK+T L++LAG L G+
Sbjct: 21 RNEEPVFGPLDFHVD------AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKT 74
Query: 135 NNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDER 194
D + Y L L+ +L + ++ + G + +
Sbjct: 75 ATRGDRSRFMAYL--GHLPG-----LKADLSTLENLHFLC----GLHG--------RRAK 115
Query: 195 DMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
M + L D V LS G+ +R A+A + + A +++ DEP + LD
Sbjct: 116 QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 8e-05
Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 26/205 (12%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLG---------RFNNPPDWQEILTYFRGSELQ 153
G V+ ++G++G GKST L+ + KP+ G D Q L ++L+
Sbjct: 31 GDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ--LKVADKNQLR 88
Query: 154 NYFTRIL----EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQV 209
TR+ NL + + ++++ +A +G + ER +K L +
Sbjct: 89 LLRTRLTMVFQHFNLWSHMT--VLENVMEAPIQVLGLSKQEARERAVKY-----LAKVGI 141
Query: 210 IDRNVG----DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP 265
+R G LSGG+ QR +IA E+ +FDEP+S LD + + ++++ L
Sbjct: 142 DERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE 201
Query: 266 NSYVIVVEHDLSVLDYLSDFICCLY 290
++VV H++ ++S + L+
Sbjct: 202 GKTMVVVTHEMGFARHVSSHVIFLH 226
|
Length = 257 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 32/197 (16%)
Query: 97 LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL--TYFRGSELQN 154
L +P+ QV L+G +G GKST L+ +L R N+ I F G ++ +
Sbjct: 22 LDIPK-NQVTALIGPSGCGKSTLLR--------SLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVG-----------QVLDQKDERDM-KADLCT 202
++E + + Q + P ++ N+ + LD+ E + KA L
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL-- 130
Query: 203 DLDLNQVIDR---NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259
++V DR + LSGG+ QR IA E+ + DEP+S LD K +++
Sbjct: 131 ---WDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI 187
Query: 260 RSLLRPNSYVIVVEHDL 276
+ L+ +++V H++
Sbjct: 188 QE-LKKKYTIVIVTHNM 203
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 211 DRNVGDLSGGELQRFAIA------VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
R G LSGGE QR +A + V +Y+ DEPS L + + ++ L
Sbjct: 483 SRAAGTLSGGEAQRIRLATQIGSGLTGV----LYVLDEPSIGLHQRDNRRLINTLKRLRD 538
Query: 265 PNSYVIVVEHD---LSVLDYLSD 284
+ +IVVEHD + DY+ D
Sbjct: 539 LGNTLIVVEHDEDTIRAADYVID 561
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 9e-05
Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 62/210 (29%)
Query: 96 RLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNY 155
+LP PG ++G++G NG GKST +++ G+ + PD I
Sbjct: 344 KLP---PGGIVGVIGPNGAGKSTLFRMITGQEQ---------PDSGTI------------ 379
Query: 156 FTRILEDNLKAIIKPQYVDHIPKAVQGN--VGQVLDQKDERDMKADLCTDLDLNQVI--- 210
+I E +K YVD A+ N V + + D+ + L +
Sbjct: 380 --KIGE-----TVKLAYVDQSRDALDPNKTVWEEI--SGGLDI-------IQLGKREVPS 423
Query: 211 --------------DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAA 256
+ VG LSGGE R +A + + DEP++ LDV + L+A
Sbjct: 424 RAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV-ETLRAL 482
Query: 257 QVVRSLLRPNSYVIVVEHDLSVLDYLSDFI 286
+ +LL +V+ HD LD ++ I
Sbjct: 483 E--EALLEFAGCAVVISHDRWFLDRIATHI 510
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 9e-05
Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 28/208 (13%)
Query: 376 IIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIP------EFNVSYKPQ--KISPKFQ 427
I ++G NG+GK+T + L G ++ S + S + P + V+Y PQ ++ F
Sbjct: 35 IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFP 94
Query: 428 STVR---------HLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVAL 478
V H+ + Q V+ + + + + +++ LSGG+ +RV L
Sbjct: 95 VLVEDVVMMGRYGHMGWLRRAKKRDR-QIVTAALARVDMVEFRHRQIGELSGGQKKRVFL 153
Query: 479 CLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLAD 536
+ + + L+DEP +D +E RI++ + R + KT V H+ T D
Sbjct: 154 ARAIAQQGQVILLDEPFTGVDVKTEARIIS---LLRELRDEGKTMLVSTHNLGSVTEFCD 210
Query: 537 RVIVYEGQPSVDCVANAP-QSLLTGMNL 563
++ +G +A+ P ++ T NL
Sbjct: 211 YTVMVKGT----VLASGPTETTFTAENL 234
|
Length = 272 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 9e-05
Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 55/227 (24%)
Query: 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVS----------YKP---- 419
+QI ++G +G GKTT +R S+ + IP F V Y P
Sbjct: 29 NQITAIIGPSGCGKTTLLR---------SINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79
Query: 420 ----QKISPKFQSTVRHLLH-----------QKIRDSYTHPQFVSDVMKPLL----IEQL 460
+K+ FQ + ++ + + V + +K ++
Sbjct: 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSE 139
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAK 518
+++ LSGG+ QR+ + L ++ L+DEP++ LD + QRI K+++ L
Sbjct: 140 LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRI--EKLLEE--LSEN 195
Query: 519 KTAFVVEHDFIMATYLADRV-IVYEGQ-----PSVDCVANAPQSLLT 559
T +V H+ A +AD + +Y G+ P+ + V P++ LT
Sbjct: 196 YTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER-PKNKLT 241
|
Length = 250 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 9e-05
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
G+V ++G NG+GK+T LK L G L G G ++
Sbjct: 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGS-----------IRLDGEDITKLPP--- 69
Query: 161 EDNLKAIIK--PQYVDHIPK-AVQGNVGQVLDQKDERDMK-ADLCTDL--DLNQVIDRNV 214
+ +A I PQ + P+ V+ N+ L R K D +L L +++ R
Sbjct: 70 HERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRG 129
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEP 243
GDLSGG+ Q+ AIA V ++ + DEP
Sbjct: 130 GDLSGGQQQQLAIARALVTRPKLLLLDEP 158
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 46/218 (21%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRML---------AGLLKPDSVEDSDVEIPEFN 414
LK V + + + ++G +G GK+TF+R L A + ++ D+ N
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTH-PQFVSDVMKPLLIEQL------------- 460
+ +++ FQS + + IR++ ++ P+ D+ LL L
Sbjct: 121 LVELRKRVGMVFQSP--NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVE 178
Query: 461 ---------------MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIV 505
+D + LSGG+ QR+ + CL ++ L+DEP++ LD +
Sbjct: 179 RSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP----I 234
Query: 506 AAKVIKRFI--LHAKKTAFVVEHDFIMATYLADRVIVY 541
A I+ I L + T VV H+ A ++D+ V+
Sbjct: 235 ATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272
|
Length = 305 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 9e-05
Identities = 51/218 (23%), Positives = 83/218 (38%), Gaps = 22/218 (10%)
Query: 337 PQESAEEIETY-ARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA 395
+S + IE ++G F L ++ I+ ++GENG GK+T ++
Sbjct: 331 HDKSVDSIELKDVHMNPKAPEGSEG-FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389
Query: 396 GLLKPDSVE---DSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTHP------ 445
GL P E D + Y+ S F HL I D H
Sbjct: 390 GLYIPQEGEILLDGAAVSADSRDDYR-DLFSAIFADF--HLFDDLIGPDEGEHASLDNAQ 446
Query: 446 QFVS--DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503
Q++ ++ + IE LS G+ +R+AL + I L DE +A D +
Sbjct: 447 QYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFK 506
Query: 504 IVAAKVIKRFILHAKKTAFVVEHDFIMATY--LADRVI 539
+ + + KT ++ HD Y LAD++I
Sbjct: 507 RFFYEELLPDLKRQGKTIIIISHD---DQYFELADQII 541
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV-IKRFI--LHA 517
+Q + LSGG Q+V L L + ++DEP+ +D V AK I R I L A
Sbjct: 395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID-----VGAKAEIYRLIRELAA 449
Query: 518 KKTAFVV---EHDFIMATYLADRVIV 540
+ A ++ E ++ L+DR++V
Sbjct: 450 EGKAILMISSELPELLG--LSDRILV 473
|
Length = 500 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 41/170 (24%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNN------PPDWQEILTYFRGSEL 152
G+++ L+G +G GK+T L+++AG +P+ G F P + + G
Sbjct: 26 PSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNV-----GFVF 80
Query: 153 QNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQK------DERDMKADLCTDLDL 206
Q+Y A+ + H+ V NV L K E +++A + L L
Sbjct: 81 QHY----------ALFR-----HM--TVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKL 123
Query: 207 NQV---IDRNVGDLSGGELQRFAIA-VVAVQNAEIYMFDEPSSYLDVKQR 252
Q+ DR LSGG+ QR A+A +AV+ ++ + DEP LD K R
Sbjct: 124 VQLDWLADRYPAQLSGGQRQRVALARALAVE-PKVLLLDEPFGALDAKVR 172
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 53/225 (23%), Positives = 85/225 (37%), Gaps = 59/225 (26%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKI- 422
L V EGE + ++G NG+GK+T + G E+ E + + + I
Sbjct: 25 LTVKEGE-----VHAIMGPNGSGKSTLAYTIMG--------HPKYEVTEGEILFDGEDIL 71
Query: 423 --SPK----------FQS-------TVRHLLHQKIRDSYTHPQFVSDVMKPL-------- 455
SP FQ T L + + + +K L
Sbjct: 72 ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLG 131
Query: 456 LIEQLMDQEV-VNLSGGELQRVALC-LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF 513
L E+ +++ V SGGE +R + L L +P + ++DEP + LD I A K++
Sbjct: 132 LDEEFLERYVNEGFSGGEKKRNEILQLLLLEP-KLAILDEPDSGLD----IDALKIVAEG 186
Query: 514 I--LHAKKTAF-VVEH-----DFIMATY---LADRVIVYEGQPSV 547
I L + ++ H D+I L D IV G P +
Sbjct: 187 INALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPEL 231
|
Length = 251 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 81 KDTTHRYGPNTFKLHRLPVPRP-GQVLGLVGTNGIGKSTALKILAGKLKPN------LGR 133
+D RY T L L + P G L+G NG GKST L L G P +GR
Sbjct: 8 EDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGR 67
Query: 134 FNNPPDWQEILT----YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD 189
N + + + + F+ + Q + + + +D P + V+ V + L
Sbjct: 68 EVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDD---VAFGPVNMGLDKDEVERRVEEALK 124
Query: 190 QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV 249
D + D+ LS G+ +R AIA V + ++ + DEP +YLD
Sbjct: 125 AVRMWDFR-------------DKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 250 KQRLKAAQVVRSLLRPNSYVIVVEHDL 276
+ + +++ L VIV HD+
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDV 198
|
Length = 274 |
| >gnl|CDD|235941 PRK07118, PRK07118, ferredoxin; Validated | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 17 KPKKCRQECKKSCPVVKT-----G-KLCIEVTPAAKIAFISEELC----IGCGICVKKCP 66
+PK C+ +C K G K C AA + F + C +G G CV CP
Sbjct: 97 EPKVAVVRCQGTCDKAKERYEYQGIKDCA----AAALLFGGPKGCSYGCLGLGSCVAACP 152
Query: 67 FEAIQIIN-LPK-DLDKDT 83
F+AI I N LP D DK T
Sbjct: 153 FDAIHIENGLPVVDEDKCT 171
|
Length = 280 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 104 QVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDN 163
++ L+G +G GKST L+ R N+ + L G +++N L N
Sbjct: 29 KITALIGASGCGKSTFLRCF--------NRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80
Query: 164 LKAIIKPQYVDHIPKAVQGNV-------GQVLDQKDERDMKADLCTDLDL-NQVIDR--- 212
+ + + V K++ N+ G + ++ +E + D + L +V D+
Sbjct: 81 VGMVFQQPNV--FVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQ 138
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY---V 269
N LSGG+ QR IA ++ + DEP+S LD ++ V+ LL+ S+ +
Sbjct: 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP----ISSGVIEELLKELSHNLSM 194
Query: 270 IVVEHDLS----VLDYLSDF 285
I+V H++ V DY + F
Sbjct: 195 IMVTHNMQQGKRVADYTAFF 214
|
Length = 246 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 26/216 (12%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
N L + +GE ++V++G +G+GK+T +R + L + S V+ V P+ +
Sbjct: 19 NIDLNIDQGE-----VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDER 73
Query: 417 YKPQKISPKFQ--------STVRHLLHQKIRDSYTHPQFVSDVMKPLL----IEQLMDQE 464
Q+ FQ + + +++ +R + + LL + +
Sbjct: 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHY 133
Query: 465 VVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524
LSGG+ QRVA+ L + L DEP++ LD E R KV++ + T +V
Sbjct: 134 PSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQD-LAEEGMTMVIV 192
Query: 525 EHDFIMATYLADRVIVYE-GQPSVDCVANAPQSLLT 559
H+ A +A R+I + G+ + D PQ L+
Sbjct: 193 THEIGFAEKVASRLIFIDKGRIAED---GDPQVLIK 225
|
Length = 240 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525
V LSGG+ QR+A+ + K A I L+DE ++ LD+E + + ++ L +T ++
Sbjct: 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET--LMKGRTTLIIA 532
Query: 526 HDFIMATYL-ADRVIVYE 542
H +AT L ADR++V +
Sbjct: 533 HR--LATVLKADRIVVMD 548
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 33/198 (16%)
Query: 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGS-ELQNYFTRILEDN 163
V L+G +G GKST L+ ++ R N +++ R E+ IL+ N
Sbjct: 49 VTALIGPSGCGKSTFLR--------SINRMN------DLIPSARSEGEILYEGLNILDSN 94
Query: 164 LKAI-------IKPQYVDHIPKAVQGNVGQVLDQKDER------DMKADLCTDLDL-NQV 209
+ + + Q + PK++ N+ L ER ++ + T L ++V
Sbjct: 95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV 154
Query: 210 IDR---NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
DR + LSGG+ QR IA + + DEP+S LD K +++ L
Sbjct: 155 KDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEY 214
Query: 267 SYVIVVEHDLSVLDYLSD 284
S +I+V H++ +SD
Sbjct: 215 S-IIIVTHNMQQALRVSD 231
|
Length = 268 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 57/199 (28%), Positives = 85/199 (42%), Gaps = 41/199 (20%)
Query: 101 RPGQVLGLVGTNGIGKST-ALKILAGKLKPNLGR--FNNPPDWQEILTYFRGSELQNYFT 157
RPG+ LGLVG +G GKST L +L +L + G F+ P L +L
Sbjct: 310 RPGETLGLVGESGSGKSTTGLALL--RLINSQGEIWFDGQP-----LHNLNRRQLLPVRH 362
Query: 158 RI---LED---------NLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLD 205
RI +D N+ II+ H P Q++++ + LD
Sbjct: 363 RIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA-------QREQQVIAVMEEVGLD 415
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD--VKQR----LKAAQVV 259
+ R + SGG+ QR AIA + + + DEP+S LD V+ + LK+ Q
Sbjct: 416 -PETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474
Query: 260 RSLLRPNSYVIVVEHDLSV 278
L +Y + + HDL V
Sbjct: 475 HQL----AY-LFISHDLHV 488
|
Length = 529 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 211 DRNVGDLSGGELQ------RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
+R + LSGGE R A+++ N + + DEP+ +LD ++R K ++ LR
Sbjct: 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR 842
Query: 265 PNSYVIVVEHD 275
VI+V HD
Sbjct: 843 KIPQVIIVSHD 853
|
Length = 880 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 21/192 (10%)
Query: 104 QVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI--LTYFRGSELQNYFTRILE 161
QV ++G +G GKST L+ + R N+ D + FRG + + +
Sbjct: 66 QVTAMIGPSGCGKSTFLRCI--------NRMNDLIDAARVEGELTFRGKNVYDADVDPVA 117
Query: 162 DNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDR 212
+ + Q + PK++ NV L D++ E ++ D ++ +D
Sbjct: 118 LRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD-EVKDQLDS 176
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVV 272
+ DLSGG+ QR IA + E+ + DEP+S LD K ++ L + V++V
Sbjct: 177 SGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYT-VVIV 235
Query: 273 EHDLSVLDYLSD 284
H++ +SD
Sbjct: 236 THNMQQAARISD 247
|
Length = 285 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 23/185 (12%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTT----FIRMLA--GLLKPDSVEDSDVEIPEF 413
GN L+ + + Q + +LG G+GK+T F+R+L G ++ D V + V + ++
Sbjct: 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKW 75
Query: 414 NVSYK--PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSD-VMKPLLIEQLMDQ---EVVN 467
++ PQK+ F T R L + S V++ V +IEQ Q +V+
Sbjct: 76 RKAFGVIPQKVF-IFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVD 134
Query: 468 ----LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFV 523
LS G Q + L + A I L+DEPSA+LD + +VI++ + A V
Sbjct: 135 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP----ITYQVIRKTLKQAFADCTV 190
Query: 524 V--EH 526
+ EH
Sbjct: 191 ILSEH 195
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 38/214 (17%)
Query: 346 TYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405
T+AR PT+ + EG ++ ++G+ G GK++ + L + D VE
Sbjct: 645 TWARDLPPTL----NGITFSIPEG-----ALVAVVGQVGCGKSSLLSALLAEM--DKVE- 692
Query: 406 SDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEV 465
V + + +V+Y PQ+ + S ++L K + ++ V++ + L D E+
Sbjct: 693 GHVHM-KGSVAYVPQQAWIQNDSLRENILFGK----ALNEKYYQQVLEACAL--LPDLEI 745
Query: 466 -------------VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE-QRIVAAKVIK 511
VNLSGG+ QRV+L + ADIYL D+P + +D+ + + VI
Sbjct: 746 LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIG 805
Query: 512 RFILHAKKTAFVVEHDFIMATYL--ADRVIVYEG 543
+ KT +V H +YL D +IV G
Sbjct: 806 PEGVLKNKTRILVTHGI---SYLPQVDVIIVMSG 836
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS 423
LK V G+ ++ ++G +G GK+T + LAG V +V I + K S
Sbjct: 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS-GEVLINGRPLD----KRS 79
Query: 424 PKFQST-VRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD--QEVVNLSGGELQRVALCL 480
+ V +D HP L + + + ++ LSGGE +RV++ L
Sbjct: 80 FRKIIGYVP-------QDDILHPT--------LTVRETLMFAAKLRGLSGGERKRVSIAL 124
Query: 481 CLGKPADIYLIDEPSAYLDS 500
L + +DEP++ LDS
Sbjct: 125 ELVSNPSLLFLDEPTSGLDS 144
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDSVEDSDV------------- 408
L V E D+ I ++G +G+GK+T +R+ L L P++ +V
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 409 --------------EIPEFNVSYKPQKISPKFQSTV--RHLLHQKIRDSYTHPQFVSDVM 452
IP ++ ++ + K V + L +++R + Q +V
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSI-FENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK 137
Query: 453 KPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512
L D LSGG+ QR+ + L ++ L DEP+A LD E AK I+
Sbjct: 138 DRL------DAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPEN---TAK-IES 187
Query: 513 FILHAKK--TAFVVEHDFIMATYLADRV-IVYEGQ 544
L KK T +V H A ++D V +Y+GQ
Sbjct: 188 LFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQ 222
|
Length = 250 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 26/190 (13%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNNPPDWQEILTYFRG-----SELQ 153
+PGQ+LG+ G G GKST L ++ + G RF++ P + L +R S+
Sbjct: 339 KPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP 398
Query: 154 NYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRN 213
F+ + +N+ A+ +P A Q + V D D+ L L Q D
Sbjct: 399 FLFSDTVANNI-ALGRPD-------ATQQEIEHVARLASVHD---DI---LRLPQGYDTE 444
Query: 214 VGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269
VG+ LSGG+ QR +IA + NAEI + D+ S +D + + +R V
Sbjct: 445 VGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ-WGEGRTV 503
Query: 270 IVVEHDLSVL 279
I+ H LS L
Sbjct: 504 IISAHRLSAL 513
|
Length = 569 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK--TAFVV 524
NLSGG+ QR+ + L I L+DEP+A +D V I+ + KK T +V
Sbjct: 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDP----VGTAKIEELLFELKKEYTIVLV 204
Query: 525 EHDFIMATYLADRV-IVYEGQ 544
H A ++D V +Y G+
Sbjct: 205 THSPAQAARVSDYVAFLYLGK 225
|
Length = 253 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-04
Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 187 VLDQKDERDMKADLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSS 245
++D++ ER + L + ++ +G LSGG Q+ +A + ++ + DEP+
Sbjct: 371 LIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTR 430
Query: 246 YLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFIC 287
+DV + + +++R L ++++ +L L LSD I
Sbjct: 431 GIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRIL 472
|
Length = 500 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 40/191 (20%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FN-------NPPDWQEILTY-FRGS 150
R G+ + G +G GKST LKI+A + P G F P +++ ++Y +
Sbjct: 31 RAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTP 90
Query: 151 ELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCT-DLDLNQV 209
L F + DNL I P + + Q D DL L +
Sbjct: 91 TL---FGDTVYDNL---IFPWQIRN-------------QQPDPAIFLDDLERFALPDT-I 130
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAE----IYMFDEPSSYLDVKQRLKAAQVVRSLLR- 264
+ +N+ +LSGGE QR ++ ++N + + + DE +S LD + +++ +R
Sbjct: 131 LTKNIAELSGGEKQRISL----IRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE 186
Query: 265 PNSYVIVVEHD 275
N V+ V HD
Sbjct: 187 QNIAVLWVTHD 197
|
Length = 225 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 43/207 (20%)
Query: 362 FKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQK 421
F LK V Q ++G NG+GK+T +++ G+ K + Y Q
Sbjct: 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK----------SGEIFYNNQA 72
Query: 422 ISPKFQSTVRHLLHQKIRDSYTHP--QFVSDVMK---------------------PLLIE 458
I+ +R + I + +P QFV ++K ++
Sbjct: 73 ITDDNFEKLR----KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALK 128
Query: 459 QL-----MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF 513
Q+ D E LSGG+ QRVA+ L + ++DE ++ LD + R ++++
Sbjct: 129 QVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKV 188
Query: 514 ILHAKKTAFVVEHDFIMATYLADRVIV 540
T + HD A AD VIV
Sbjct: 189 KSEHNITIISITHDLSEAME-ADHVIV 214
|
Length = 269 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 45/220 (20%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPD---SVEDSDVEIPEFNVSYKP--QKISPKFQS- 428
Q + ++GE+G+GK+T L L+ + D++ +P +++ FQ
Sbjct: 314 QTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRK-EMRPLRRRMQVVFQDP 372
Query: 429 --------TVRH------LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVN-----LS 469
TV +H+ + Q V + ++ E +D N S
Sbjct: 373 YGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALE----EVGLDPATRNRYPHEFS 428
Query: 470 GGELQRVALC--LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF-ILHAKK--TAFVV 524
GG+ QR+A+ L L KP I L+DEP++ LD R V A+V+ L K + +
Sbjct: 429 GGQRQRIAIARALIL-KPELI-LLDEPTSALD---RSVQAQVLDLLRDLQQKHGLSYLFI 483
Query: 525 EHDFIMATYLADRVIVYEG-----QPSVDCVANAPQSLLT 559
HD + L RVIV Q + V PQ T
Sbjct: 484 SHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYT 523
|
Length = 534 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 35/226 (15%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS------------VEDSDVEIP 411
LK V + +I ++G +G+GK+TF+R + L KP + D D ++
Sbjct: 22 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81
Query: 412 EFNVSYKPQKISPKFQSTVRHL---LHQKIRDSYTH-PQFVSDVMKPLLIEQLM------ 461
+ + Q++ + +H H + ++ P V V K IE+
Sbjct: 82 PAD-KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140
Query: 462 ------DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515
D +LSGG+ QRVA+ L ++ L DEP++ LD E KV+ + +
Sbjct: 141 GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVM-QDLA 199
Query: 516 HAKKTAFVVEHDFIMATYLADRVI-----VYEGQPSVDCVANAPQS 556
+T VV H+ A ++ VI E + + V PQS
Sbjct: 200 EEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 49/206 (23%), Positives = 82/206 (39%), Gaps = 62/206 (30%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN---------NPPDWQEIL------- 144
RPG+ + LVG +G GKST ++L P GR +P + + +
Sbjct: 364 RPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDP 423
Query: 145 TYFRGSELQNY-FTRI------LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMK 197
F S ++N + R +E +A +++ +P+ +G+
Sbjct: 424 VLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGE----------- 472
Query: 198 ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD------VKQ 251
R V LSGG+ QR AIA +++A I + DE +S LD V+Q
Sbjct: 473 --------------RGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQ 517
Query: 252 RLKAAQVVRSLLRPNSYVIVVEHDLS 277
L+ R+ L ++ H L+
Sbjct: 518 ALETLMKGRTTL-------IIAHRLA 536
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 52/211 (24%), Positives = 77/211 (36%), Gaps = 46/211 (21%)
Query: 84 THRYGPNT------FKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--- 134
+ RYG F + RPG+ + L+G NG GKST +L G+
Sbjct: 8 SFRYGARRALDDVSFTV------RPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61
Query: 135 -----NNPPD-WQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL 188
P + F+ L + + NL A+ G L
Sbjct: 62 GHDLRRAPRAALARLGVVFQQPTLDLDLS--VRQNL----------RYHAALHG-----L 104
Query: 189 DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
+ + R A+L L L + D V +L+GG +R IA + + + DEP+ LD
Sbjct: 105 SRAEARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLD 164
Query: 249 VKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279
R VR+L R + LSVL
Sbjct: 165 PASRAAITAHVRALAR--------DQGLSVL 187
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 47 IAFISEELCIGCGICVKKCPFEAI 70
+A I E+LCIGC +C++ CP +AI
Sbjct: 79 VAVIDEQLCIGCTLCMQACPVDAI 102
|
Length = 270 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPNS 267
++ N LSGG+ QR +IA ++N +I + DE +S LD K + + +L N
Sbjct: 572 LVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENR 631
Query: 268 YVIVVEHDLSVLDY 281
I++ H LS + Y
Sbjct: 632 ITIIIAHRLSTIRY 645
|
Length = 1466 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 22/206 (10%)
Query: 97 LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL--TYFRGSELQN 154
+ +P+ +V L+G +G GKST L+ R N+ I + G + +
Sbjct: 27 ISIPK-NRVTALIGPSGCGKSTLLRCF--------NRMNDLIPGCRITGDILYNGENIMD 77
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVG---QVLDQKDERDMKADLCTDLD----LN 207
++ K + Q + PK++ NV ++ +K+++ + + L +
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD 137
Query: 208 QVIDR---NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
+V DR + LSGG+ QR IA N E+ + DEP S LD K ++ L +
Sbjct: 138 EVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197
Query: 265 PNSYVIVVEHDLSVLDYLSDFICCLY 290
+ VI+V H++ +SD+ +Y
Sbjct: 198 EYT-VIIVTHNMQQAARVSDYTGFMY 222
|
Length = 253 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS 423
L+ V ++ V+LG G+GK+T +L LL + + V E +++Y PQ+ +
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKST---LLQSLLSQFEISEGRV-WAERSIAYVPQQ-A 730
Query: 424 PKFQSTVR-----------HLLHQKIRDSYTHPQFVSDVMK-PLLIEQLMDQEVVNLSGG 471
+TVR L +R S Q +D+ + +E + ++ VNLSGG
Sbjct: 731 WIMNATVRGNILFFDEEDAARLADAVRVS----QLEADLAQLGGGLETEIGEKGVNLSGG 786
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSE--QRIVAAKVIKRFILHAKKTAFVVEH--- 526
+ RV+L + D+YL+D+P + LD+ +R+V + A KT + H
Sbjct: 787 QKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL---AGKTRVLATHQVH 843
Query: 527 -----DFIMATYLADRVIVYEG 543
D+++A L D + + G
Sbjct: 844 VVPRADYVVA--LGDGRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|233648 TIGR01944, rnfB, electron transport complex, RnfABCDGE type, B subunit | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 40 EVTPAAKIAFISEELCIGCGICVKKCPFEAI 70
+A I E+ CIGC C++ CP +AI
Sbjct: 100 GTIQPPMVALIDEDNCIGCTKCIQACPVDAI 130
|
The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit [Energy metabolism, Electron transport]. Length = 165 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 47/209 (22%), Positives = 88/209 (42%), Gaps = 40/209 (19%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G+ + ++G G GK+T ++ L L P+ G I F+ + + +
Sbjct: 33 GEFIAIIGQTGSGKTTFIEHLNALLLPDTG---------TIEWIFKDEKNKKKTKEKEKV 83
Query: 163 NLKAIIKPQYVDHIP--KAVQGNVGQVLD-----------QKD----------------E 193
K +I+ I K ++ VG V +KD +
Sbjct: 84 LEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKK 143
Query: 194 RDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRL 253
R K LD + + R+ +LSGG+ +R A+A + + +FDEP++ LD +
Sbjct: 144 RAAKYIELVGLDES-YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVK 202
Query: 254 KAAQVVRSLLRPNSYVIVVEHDL-SVLDY 281
+ ++ +L + +I+V HDL +VL++
Sbjct: 203 EILEIFDNLNKQGKTIILVTHDLDNVLEW 231
|
Length = 305 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 180 VQGNVGQVLD----QKDERDMKADLCTDL-DLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234
V+ NV L+ K ER + D +L L Q DR G+LSGG QR +A
Sbjct: 123 VEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKPGELSGGMQQRVGLARAFATE 182
Query: 235 AEIYMFDEPSSYLD--VKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
A I + DEP S LD ++ +L+ +++ + ++ V HDL
Sbjct: 183 APILLMDEPFSALDPLIRTQLQ-DELLELQSKLKKTIVFVSHDL 225
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 3e-04
Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 31/197 (15%)
Query: 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHL 433
+++ +G +G GK+TF+R L L + EI + + +KIS T +
Sbjct: 108 NKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGM 167
Query: 434 LHQK--------------------IRDSYTHPQFVSDVMKPLL----IEQLMDQEVVNLS 469
+ QK I D + V +K ++ +D+ LS
Sbjct: 168 VFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALS 227
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK--TAFVVEHD 527
GG+ QR+ + + ++ L+DEP++ LD +A I+ IL KK + +V H
Sbjct: 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDP----IATAKIEELILELKKKYSIIIVTHS 283
Query: 528 FIMATYLADR-VIVYEG 543
A ++D V Y+G
Sbjct: 284 MAQAQRISDETVFFYQG 300
|
Length = 329 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 12/82 (14%)
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAE---IYMFDEPSSYL---DVKQRLKAAQVVRSLLRP 265
+ LSGGE QR +A + + +Y+ DEP++ L D+K+ L +V++ L+
Sbjct: 825 QPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL---EVLQRLVDK 881
Query: 266 NSYVIVVEHDLSVL---DYLSD 284
+ V+V+EH+L V+ DY+ D
Sbjct: 882 GNTVVVIEHNLDVIKTADYIID 903
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 29/175 (16%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG-------RFNNPPDWQEILTYFRGSELQ 153
RPG + L+G +G GK+T + +LAG+ G R + P QE G Q
Sbjct: 904 RPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIEGDIRISGFPKKQETFARISGYCEQ 960
Query: 154 NYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL-DLNQVIDR 212
N +++I ++ +PK V K+E+ M D +L +L+ + D
Sbjct: 961 NDIHSPQVTVRESLIYSAFL-RLPKEVS---------KEEKMMFVDEVMELVELDNLKDA 1010
Query: 213 NVG-----DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL 262
VG LS + +R IAV V N I DEP+S LD + AA V+R++
Sbjct: 1011 IVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTV 1062
|
Length = 1470 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 50/213 (23%), Positives = 77/213 (36%), Gaps = 43/213 (20%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDV--------------EIPEFNVSYK-- 418
++ +LG NG GK+T ++ LAG L I ++
Sbjct: 28 RVTALLGRNGAGKSTLLKALAGDL-TGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRA 86
Query: 419 --PQKISPKFQSTVRHLL------HQKIRDSYTHP--QFVSDVMKPLLIEQLMDQEVVNL 468
PQ P F + R ++ H + + TH + + L+ ++V L
Sbjct: 87 VLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTL 146
Query: 469 SGGELQRVALCLCLGK---------PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK 519
SGGEL RV L + P L+DEP+A LD + ++R
Sbjct: 147 SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNL 206
Query: 520 TAFVVEHDFIMATYLADRV-------IVYEGQP 545
+ HD +A ADR+ IV G P
Sbjct: 207 GVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239
|
Length = 272 |
| >gnl|CDD|223514 COG0437, HybA, Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 25 CKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQI 72
C K CP TG L I + ++LCIGCG C+ CP+ A Q
Sbjct: 77 CVKVCP---TGAL--FKREEDGIVLVDKDLCIGCGYCIAACPYGAPQF 119
|
Length = 203 |
| >gnl|CDD|205098 pfam12837, Fer4_6, 4Fe-4S binding domain | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 3e-04
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 47 IAFISEELCIGCGICVKKCPFEAI 70
+ I + CIGCG CV CP AI
Sbjct: 1 VVEIDPDKCIGCGRCVAVCPEGAI 24
|
This superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Length = 24 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 43/216 (19%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPN--LGRF--NNPPDWQEIL--TYFRGSELQNY 155
PG++L ++G +G GKST L LAG+++ N G NN ++IL T F + Y
Sbjct: 93 PGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILY 152
Query: 156 FTRILEDNLK--AIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKAD-LCTDLDLNQVIDR 212
+ + L ++++ +PK++ K E+ + A+ + ++L L + +
Sbjct: 153 PHLTVRETLVFCSLLR------LPKSLT---------KQEKILVAESVISELGLTKCENT 197
Query: 213 NVGD-----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQ--RL---------KAA 256
+G+ +SGGE +R +IA + N + + DEP+S LD RL K
Sbjct: 198 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK 257
Query: 257 QVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292
+V S+ +P+S V + SVL LS+ C +GK
Sbjct: 258 TIVTSMHQPSSRVYQMFD--SVL-VLSEGRCLFFGK 290
|
Length = 659 |
| >gnl|CDD|224069 COG1146, COG1146, Ferredoxin [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 3e-04
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEA 69
++ D+C C C + CP G + K E CI CG+C CP A
Sbjct: 4 VIDYDKCI--GCG-ICVEVCPA---GVFDLGEDEGGKPVVARPEECIDCGLCELACPVGA 57
Query: 70 IQIINLPKD 78
I++ L
Sbjct: 58 IKVDILRPG 66
|
Length = 68 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 48/212 (22%), Positives = 99/212 (46%), Gaps = 39/212 (18%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKI- 422
LK + + ++ I ++G +G+GK+T +++L L++ + DS +++ + V Y + I
Sbjct: 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKV-DGKVLYFGKDIF 81
Query: 423 ---SPKFQSTVRHLLHQ-------KIRDSYTHPQFVSDVMKPLLIEQLMDQ--------- 463
+ K + V + Q I D+ +P + + I++++++
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 464 EVVN--------LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515
EV + LSGG+ QR+ + L + L+DEP++ +D IV ++ I++ I
Sbjct: 142 EVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID----IVNSQAIEKLIT 197
Query: 516 HAKK--TAFVVEHDFIMATYLADRV-IVYEGQ 544
K +V H+ +AD V +Y G+
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGE 229
|
Length = 257 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 19/221 (8%)
Query: 70 IQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKP 129
I++ N+ K + T N LH VP GQ+ G++G +G GKST ++ + +P
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLH---VPA-GQIYGVIGASGAGKSTLIRCVNLLERP 57
Query: 130 NLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD 189
G D Q+ LT SEL +I +I + + V GNV L+
Sbjct: 58 TSGSV--IVDGQD-LTTLSNSELTKARRQI------GMIFQHFNLLSSRTVFGNVALPLE 108
Query: 190 ----QKDERDMKA-DLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPS 244
KDE K +L + L D +LSGG+ QR AIA N ++ + DE +
Sbjct: 109 LDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT 168
Query: 245 SYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSD 284
S LD ++++ + R ++++ H++ V+ + D
Sbjct: 169 SALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICD 209
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|225433 COG2878, COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 40 EVTPAAKIAFISEELCIGCGICVKKCPFEAI 70
A +A I E CIGC C++ CP +AI
Sbjct: 102 GEEQARMVALIDEANCIGCTKCIQACPVDAI 132
|
Length = 198 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 30/190 (15%)
Query: 373 DSQIIVMLGENGTGKTTFIRMLAG--------------LLKPDSVEDSDVEIPEF--NVS 416
+++I ++G +G GK+TF+R L LL ++ D DV++ E V
Sbjct: 29 ENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVG 88
Query: 417 YKPQKISPKFQSTVRHLLH----QKIRDSYTHPQFVSDVMK-PLLIEQLMD---QEVVNL 468
QK +P S ++ + I+D + V +K L +++ D + + L
Sbjct: 89 MVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKL 148
Query: 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK--TAFVVEH 526
SGG+ QR+ + + D+ L+DEP++ LD ++ I+ ++ KK T +V H
Sbjct: 149 SGGQQQRLCIARTIAVKPDVILMDEPTSALDP----ISTLKIEDLMVELKKEYTIVIVTH 204
Query: 527 DFIMATYLAD 536
+ A+ ++D
Sbjct: 205 NMQQASRVSD 214
|
Length = 251 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 28/94 (29%), Positives = 55/94 (58%), Gaps = 12/94 (12%)
Query: 200 LCTDLDLNQV-IDRNVGDLSGGELQRFAIA---VVAVQNAEIYMFDEPSSYL---DVKQR 252
LC+ L L+ + + R + LSGGE+QR +A + + +Y+ DEP++ L D+K
Sbjct: 793 LCS-LGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKAL 851
Query: 253 LKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFI 286
+ V++SL V+++EH++ V+ ++D++
Sbjct: 852 I---YVLQSLTHQGHTVVIIEHNMHVVK-VADYV 881
|
Length = 1809 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 4e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134
PG+V+ +VG G GK+T + LA +L P G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV 33
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|224068 COG1145, NapF, Ferredoxin [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 39.9 bits (92), Expect = 4e-04
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 50 ISEELCIGCGICVKKCPFEAIQIINLPKDLDK 81
I E CIGCG+CVK CP AI++I L +
Sbjct: 26 IDAEKCIGCGLCVKVCPTGAIELIEEGLLLPE 57
|
Length = 99 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 30/141 (21%)
Query: 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRH 432
DS+I M+G NG GK+T +++++G L+P S ++ S K + V
Sbjct: 535 DSRI-AMVGPNGIGKSTILKLISGELQPSS-----------GTVFR----SAKVRMAVFS 578
Query: 433 LLHQKIRDSYTHPQFVSDVMKPLLIEQ--------------LMDQEVVNLSGGELQRVAL 478
H D ++P P + EQ L Q + LSGG+ RVA
Sbjct: 579 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 638
Query: 479 CLCLGKPADIYLIDEPSAYLD 499
K I L+DEPS +LD
Sbjct: 639 AKITFKKPHILLLDEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 199 DLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
DL DL ++ +R V ++SGG+ QR ++A N++IY+FD+P S LD
Sbjct: 724 DLLPGRDLTEIGERGV-NISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772
|
Length = 1495 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 31/201 (15%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRML------------AG--LLKPDSVEDS 406
N L + E E T ++G +G GK+T+I+ L G L + ++ D
Sbjct: 42 NINLDIHENEVT-----AIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96
Query: 407 DVEIPEF--NVSYKPQKISPKFQSTVRHLLH----QKIRDSYTHPQFVSDVMKPLLI-EQ 459
+ E NV QK +P +S ++ + I+D T + V ++ I ++
Sbjct: 97 SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDE 156
Query: 460 LMDQEVVN---LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516
L D+ N LSGG+ QR+ + CL D+ L+DEP++ LD + ++++ L
Sbjct: 157 LKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE--LK 214
Query: 517 AKKTAFVVEHDFIMATYLADR 537
+ +V H+ A ++D+
Sbjct: 215 KDYSIIIVTHNMQQAARISDK 235
|
Length = 271 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 42/203 (20%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG--RFNNPPDWQEILTYFRGSELQNYFTR 158
+ G+ LG++G +G GKST ++L G P G R + G++L+ +
Sbjct: 360 QAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD-------------GADLRQWD-- 404
Query: 159 ILEDNLKAIIK--PQYVDHIPKAVQGNVGQVLDQKDERDMKA--------DLCTDLDLNQ 208
+ L I PQ V+ + N+ + ++ D + +L L L Q
Sbjct: 405 --REQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELI--LRLPQ 460
Query: 209 VIDRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV--KQRLKAAQVVRSL 262
D +G+ LSGG+ QR A+A + + + DEP+S LD + L AA + +
Sbjct: 461 GYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA--ILAA 518
Query: 263 LRPNSYVIVVEHDLSVL---DYL 282
V+V+ H S L D +
Sbjct: 519 KARGGTVVVIAHRPSALASVDKI 541
|
Length = 580 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 53/223 (23%)
Query: 81 KDTTHRYGPNT-FKLHRL----PVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135
+ HRY T F+ L G + ++G G GKST L+ L G L+P G
Sbjct: 6 QKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG--- 62
Query: 136 NPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKP-----QYVDHIPKAVQGNVGQVLDQ 190
T G + + LK + K Q+ +H Q+ ++
Sbjct: 63 ---------TVTIGERVITAGKK--NKKLKPLRKKVGIVFQFPEH----------QLFEE 101
Query: 191 KDERDM----------------KADLCTDL-DLNQ-VIDRNVGDLSGGELQRFAIAVVAV 232
E+D+ KA +L L + ++ R+ +LSGG+++R AIA V
Sbjct: 102 TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161
Query: 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEH 274
E+ + DEP++ LD K R + ++ L + ++V H
Sbjct: 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTH 204
|
Length = 290 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 205 DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV----VR 260
DL ++ +R V ++SGG+ QR ++A N+++Y+FD+P S LD QV ++
Sbjct: 730 DLTEIGERGV-NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHV---GRQVFDKCIK 785
Query: 261 SLLRPNSYVIVVE--HDLSVLDYL 282
LR + V+V H LS +D +
Sbjct: 786 DELRGKTRVLVTNQLHFLSQVDRI 809
|
Length = 1622 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 43/191 (22%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF---NNP---PDWQEILTYFRGSELQNY 155
G++L ++G +G GK+T L ++AG + G P P + RG QN
Sbjct: 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE------RGVVFQN- 78
Query: 156 FTRILEDNLKAIIKPQYVDHIP-KAVQGNVGQVLD----QKDERDMKA-DLCTDLDLNQV 209
+ L +P + VQ NV L +K +R A + + L
Sbjct: 79 ------EGL-----------LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA 121
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR----P 265
R + LSGG+ QR IA N ++ + DEP LD R Q+ LL+
Sbjct: 122 EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTR---EQMQTLLLKLWQET 178
Query: 266 NSYVIVVEHDL 276
V+++ HD+
Sbjct: 179 GKQVLLITHDI 189
|
Length = 255 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 33/160 (20%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP---- 419
V G F +LG NG GK+T +L L + + ++ P
Sbjct: 22 FTVRPGRFV-----ALLGPNGAGKSTLFSLLTRLYVAQE---GQISVAGHDLRRAPRAAL 73
Query: 420 QKISPKFQS-------TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ--------- 463
++ FQ +VR L + +S I +L+ +
Sbjct: 74 ARLGVVFQQPTLDLDLSVRQNLRY-----HAALHGLSRAEARARIAELLARLGLAERADD 128
Query: 464 EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503
+V L+GG +RV + L + L+DEP+ LD R
Sbjct: 129 KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASR 168
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 47/209 (22%), Positives = 88/209 (42%), Gaps = 51/209 (24%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--------------LKPDSVEDSDVE 409
LK V + + + ++G +G GK+TFIR L + ++ + + + DV+
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 410 IPEF--------------------NVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVS 449
+ E NV+Y P +I + + ++ +R + + S
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGP-RIHGANKKDLDGVVENALRSAALWDE-TS 145
Query: 450 DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509
D +K ++LSGG+ QR+ + L I L DEP++ LD ++
Sbjct: 146 DRLK---------SPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP----ISTAR 192
Query: 510 IKRFILHAKK--TAFVVEHDFIMATYLAD 536
I+ I++ KK T +V H+ A ++D
Sbjct: 193 IEDLIMNLKKDYTIVIVTHNMQQAARISD 221
|
Length = 258 |
| >gnl|CDD|234170 TIGR03336, IOR_alpha, indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 15/63 (23%)
Query: 10 IVSSDRCKPKKCRQECKKS--CPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
V D+C C++ C K CP ++ + P LC GCG+C + CPF
Sbjct: 546 KVDQDKCI--GCKK-CIKELGCPAIEPEDKEAVIDP----------LCTGCGVCAQICPF 592
Query: 68 EAI 70
+AI
Sbjct: 593 DAI 595
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. Length = 595 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 5e-04
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
LS GE Q IA +NA + + DEP++ L + + +V+R L VI + H L
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 23/183 (12%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF----RG----SELQN 154
G+++GL+G NG GK+T ++ G + + G + +L RG + +
Sbjct: 29 GEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEAS 88
Query: 155 YFTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRN 213
F R+ + DNL A+++ + L + D +L + + + D
Sbjct: 89 IFRRLSVYDNLMAVLQ--------------IRDDLSAEQREDRANELMEEFHIEHLRDSM 134
Query: 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE 273
LSGGE +R IA N + + DEP + +D + +++ L V++ +
Sbjct: 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITD 194
Query: 274 HDL 276
H++
Sbjct: 195 HNV 197
|
Length = 241 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 186 QVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSS 245
QVLD+ E+ +K D +++ D +G LSGG+ QR IA V + +I + DEP+S
Sbjct: 119 QVLDEAVEKSLKGASIWDEVKDRLHDSALG-LSGGQQQRVCIARVLATSPKIILLDEPTS 177
Query: 246 YLDVKQRLKAAQVVRSL--LRPNSYVIVVEHDLSVLDYLSD 284
LD + A ++ +L L+ + +++V + +SD
Sbjct: 178 ALD---PISAGKIEETLLGLKDDYTMLLVTRSMQQASRISD 215
|
Length = 252 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 33/204 (16%)
Query: 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI--LTYFRGSELQNYFTRILED 162
V L+G +G GKST L+ L R N+ I G ++ ++E
Sbjct: 73 VTALIGPSGCGKSTFLRCL--------NRMNDRIKAARIDGSVELDGQDIYQDGVNLVEL 124
Query: 163 NLKAIIKPQYVDHIPKAVQGNV-------GQV-------LDQKDERDMKADLCTDL---- 204
+ + Q + PK+++ N+ G + L +D++D + +L
Sbjct: 125 RKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQA 184
Query: 205 ----DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVR 260
++N +D N LSGG+ QR IA + E+ + DEP+S LD K ++
Sbjct: 185 ALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIE 244
Query: 261 SLLRPNSYVIVVEHDLSVLDYLSD 284
L + V+VV H++ +SD
Sbjct: 245 ELAEEYT-VVVVTHNMQQAARISD 267
|
Length = 305 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Query: 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN-----SYVIVV 272
SGG+ QR AIA + + ++ + DEP S LDV + AQV+ ++ SYV +
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQ---AQVLNLMMDLQQELGLSYVF-I 211
Query: 273 EHDLSVLDYLSD 284
HDLSV+++++D
Sbjct: 212 SHDLSVVEHIAD 223
|
Length = 327 |
| >gnl|CDD|221966 pfam13187, Fer4_9, 4Fe-4S dicluster domain | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 5e-04
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 20 KCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAI 70
C C K CP I K+ CIGCG CV+ CP AI
Sbjct: 4 GCG-ACVKVCPAG-----VIMRDNGGKVV----VKCIGCGACVEVCPVGAI 44
|
Length = 44 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 30/164 (18%)
Query: 363 KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSV-----------EDSDVEIP 411
+K ++ +F ++I ++G +G+GK+T++R L + D++ D+
Sbjct: 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM--NDTIDIARVTGQILYRGIDINRK 92
Query: 412 EFNVSYKPQK-ISPKFQ-------STVRHLLHQKIRDSYTHPQFVSDVM-----KPLLIE 458
E NV Y+ +K I FQ S ++ R + + +++ + L +
Sbjct: 93 EINV-YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD 151
Query: 459 QLMD---QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499
Q+ D + + LSGG+ QR+ + + DI L+DEP++ LD
Sbjct: 152 QVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
|
Length = 267 |
| >gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic SMC3 proteins | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 461 MDQEVVNLSGGELQRVALCL--CLGK--PADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516
QE+ LSGG+ VAL L + K PA YL DE A LD++ R A +IK
Sbjct: 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL--- 208
Query: 517 AKKTAFVV 524
+ F+
Sbjct: 209 SDGAQFIT 216
|
The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 243 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 27/188 (14%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRF-------NNPPDWQE---ILTYFRGSEL 152
G + ++G+NG GKST L +AG LKP G+ + + F+
Sbjct: 32 GDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLA 91
Query: 153 QNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLC-TDLDLNQVID 211
+E+NL + + + + L+++ + L L L +
Sbjct: 92 GTAPELTIEENL--ALAES------RGKKRGLSSALNERRRSSFRERLARLGLGLENRLS 143
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
+G LSGG+ Q ++ + + +I + DE ++ LD K A+ V L IV
Sbjct: 144 DRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDP----KTAEFVMELTAK----IV 195
Query: 272 VEHDLSVL 279
EH L+ L
Sbjct: 196 EEHKLTTL 203
|
Length = 263 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP 265
L D VG+LSGG +R +A V + ++ + DEP++ LD + R + +RSLL
Sbjct: 128 LENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR 187
Query: 266 NSYVIVVEHDLSVLDYLSDFIC 287
+++ H + + L D +C
Sbjct: 188 GKTILLTTHFMEEAERLCDRLC 209
|
Length = 306 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 30/152 (19%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQE--ILTYF---RGSELQNYF 156
G+ L ++G NG+GK+T L+ L G+L+P+ G W E + Y+ + +N
Sbjct: 344 AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK----WSENANIGYYAQDHAYDFENDL 399
Query: 157 TRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGD 216
T L D + + + +AV+G +G++L +D+ I ++V
Sbjct: 400 T--LFDWMSQWRQEGDDE---QAVRGTLGRLLFSQDD----------------IKKSVKV 438
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
LSGGE R + +Q + + DEP++++D
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
|
Length = 530 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 49/206 (23%), Positives = 98/206 (47%), Gaps = 31/206 (15%)
Query: 360 GNFK-LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPD-------SVEDSDVE 409
G+F+ LK + + ++Q+ ++G +G GK+TF+R L + L P ++ D+
Sbjct: 14 GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73
Query: 410 IPEFNVSYKPQKISPKFQ-------STVRHLLH----QKIRDSYTHPQFVSDVMKPLLI- 457
+ +V+ +++ FQ S ++ + I+D + V +K +
Sbjct: 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALW 133
Query: 458 EQLMD---QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI 514
+++ D + + LSGG+ QR+ + L ++ L+DEP++ LD I K I+ I
Sbjct: 134 DEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDP---ISTLK-IEELI 189
Query: 515 LHAKK--TAFVVEHDFIMATYLADRV 538
KK T +V H+ A+ ++D+
Sbjct: 190 QELKKDYTIVIVTHNMQQASRISDKT 215
|
Length = 250 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 457 IEQLMD---------QEVVNLSGGELQRVALCLCLGKPAD---IYLIDEPSAYLDSEQRI 504
++ L D Q LSGGE QR+ L L K + +Y++DEP+ L +
Sbjct: 810 LQTLCDVGLGYIRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIK 869
Query: 505 VAAKVIKRFILHAKKTAFVVEHDF-IMATYLADRVI 539
+V++R + T V+EH+ ++ T AD +I
Sbjct: 870 KLLEVLQRLV-DKGNTVVVIEHNLDVIKT--ADYII 902
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 16/157 (10%)
Query: 139 DWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA 198
+E+ + L+ R L ++A + I + N + +D
Sbjct: 744 LLEELREKLGKAGLRADILRNLLAQIEA-----EANEILSKLSLNRYDLRRLTIRKDGNG 798
Query: 199 DLCTD-LDLNQVIDRNVGDLSGGE-----LQ-RFAIAVVAVQNA--EIYMFDEPSSYLDV 249
L D +V R + LSGGE L R A++ + A E+ DEP LD
Sbjct: 799 GLVVVVYDGGEV--RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDE 856
Query: 250 KQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFI 286
++ K A+++ LL +I++ H + + I
Sbjct: 857 ERLEKLAEILEELLSDGRQIIIISHVEELKERADVRI 893
|
Length = 908 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 33/191 (17%)
Query: 358 TQGNFKL-----------KVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE-D 405
+QG F+L + G+ +G NG+GK+ R LAG L S E
Sbjct: 7 SQGTFRLSDTKTLQLPSLTLNAGDSW-----AFVGANGSGKSALARALAGELPLLSGERQ 61
Query: 406 SDVEIPEFNVSY-KPQK-ISPKFQSTVRHLLH-----------QKIRDSYTHPQFVSDVM 452
S +S+ + QK +S ++Q +L + I+D P +
Sbjct: 62 SQFSHIT-RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLA 120
Query: 453 KPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512
+ I L+D+ LS GE ++ LC L D+ ++DEP LD R A+++
Sbjct: 121 QQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLAS 180
Query: 513 FILHAKKTAFV 523
LH V
Sbjct: 181 --LHQSGITLV 189
|
Length = 490 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 12/77 (15%)
Query: 217 LSGGELQRFAIAVVAVQNAE---IYMFDEPSSYL---DVKQRLKAAQVVRSLLRPNSYVI 270
LSGGE QR +A + + +Y+ DEP++ L DVK+ L +V++ L+ + V+
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLL---EVLQRLVDKGNTVV 226
Query: 271 VVEHDLSVL---DYLSD 284
V+EH+L V+ D++ D
Sbjct: 227 VIEHNLDVIKCADWIID 243
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 44/176 (25%), Positives = 63/176 (35%), Gaps = 42/176 (23%)
Query: 361 NFK---LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSY 417
NFK + V G IV G NG+GK+ + D++ F +
Sbjct: 8 NFKSYRDETVVGGSNSFNAIV--GPNGSGKSNIV---------DAIC--------FVLGG 48
Query: 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLL--IEQLMDQEVVN--LSGGEL 473
K K+ + S ++ L+ Q V LSGGE
Sbjct: 49 KAAKLRRGSLLFLAG--------GGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEK 100
Query: 474 QRVALCLCLG----KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA-FVV 524
AL L KP+ Y++DE A LD R + +IK AK T+ F+V
Sbjct: 101 SLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKE---MAKHTSQFIV 153
|
The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. Length = 178 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 7e-04
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 450 DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAA-- 507
+++ L ++ D V +LS + Q V + L A + ++DEP+A L ++
Sbjct: 128 ELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKE--TERLF 185
Query: 508 KVIKRFILHAKKTAFV-VEHDF--IMATYLADRVIV 540
+I+R L A+ A + + H + +ADR+ V
Sbjct: 186 DLIRR--LKAQGVAIIYISHRLDEVFE--IADRITV 217
|
Length = 500 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 182 GNVGQVLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240
G +G + + DE+ + L L +++N+ +LSGG Q+ I+ E+ +F
Sbjct: 375 GAMG-LFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIF 433
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
DEP+ +DV + + +V+R L +++V +L
Sbjct: 434 DEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469
|
Length = 510 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
Query: 463 QEVVNLSGGELQRVALCLCLGKPAD---IYLIDEPSAYL---DSEQRIVAAKVIKRFILH 516
Q LSGGE QRV L L K + +Y++DEP+ L D ++ + +V+ R +
Sbjct: 818 QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL---EVLHRLV-D 873
Query: 517 AKKTAFVVEH--DFIMATYLADRVI 539
T V+EH D I AD +I
Sbjct: 874 KGNTVIVIEHNLDVIKT---ADWII 895
|
Length = 935 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 7e-04
Identities = 43/196 (21%), Positives = 89/196 (45%), Gaps = 17/196 (8%)
Query: 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNL 164
+ G++G +G GKST LK+L ++ +++ + YF Q ++ ++
Sbjct: 38 IFGIMGPSGSGKSTLLKVLNRLIEI----YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVG 93
Query: 165 KAIIKPQYVDHIPKAVQGNVGQVLDQ---KDERDMKADLCTDLD----LNQVIDR---NV 214
+P H+ ++ N+ L K++R++K + L +V DR
Sbjct: 94 MVFQQPNPFPHL--SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA 151
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEH 274
LSGG+ QR IA ++ + DEP+S +D+ +++ L+ +++V H
Sbjct: 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE-LKNEIAIVIVSH 210
Query: 275 DLSVLDYLSDFICCLY 290
+ + ++D++ LY
Sbjct: 211 NPQQVARVADYVAFLY 226
|
Length = 257 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 46/207 (22%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRML--------------AGLLKPDSVEDSDVE 409
LK + +F + QI ++G +G GK+T +R L A LL +++ +++
Sbjct: 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79
Query: 410 IPEF--------------------NVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVS 449
+ NV++ P+ + QS + ++ + +R + +
Sbjct: 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD 139
Query: 450 DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509
++ K L LSGG+ QR+ + L ++ L+DEP + LD + ++
Sbjct: 140 NLHKSGLA----------LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL 189
Query: 510 IKRFILHAKKTAFVVEHDFIMATYLAD 536
++ L T +V H+ A +D
Sbjct: 190 MQE--LKQNYTIAIVTHNMQQAARASD 214
|
Length = 251 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 8e-04
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGS---ELQNYFTRI 159
G +L L G+NG GK+T LK++AG L P G + + R S +L Y ++
Sbjct: 27 GGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE----------ILFERQSIKKDLCTYQKQL 76
Query: 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219
++ I P ++ N + +LC L +ID G LS
Sbjct: 77 CFVGHRSGINPYL------TLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSS 130
Query: 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
G+ ++ A+ + + A++++ DEP LD
Sbjct: 131 GQKRQVALLRLWMSKAKLWLLDEPLVALD 159
|
Length = 200 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 8e-04
Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 26/205 (12%)
Query: 76 PKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR-- 133
PK + GP ++ + G ++ +VG NG GKST K+ G P G
Sbjct: 347 PKAPEGSEGFALGPIDLRIAQ------GDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL 400
Query: 134 FNNPPDWQEILTYFRGSELQNYFTRILEDN--LKAIIKPQYVDHIPKAVQGNVGQVLDQK 191
+ + +R + F+ I D +I P +H A N Q L
Sbjct: 401 LDGAAVSADSRDDYR-----DLFSAIFADFHLFDDLIGPDEGEH---ASLDNAQQYL--- 449
Query: 192 DERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK- 250
+R AD D LS G+ +R A+ +++ I +FDE ++ D
Sbjct: 450 -QRLEIADKVKIEDGGF---STTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAF 505
Query: 251 QRLKAAQVVRSLLRPNSYVIVVEHD 275
+R +++ L R +I++ HD
Sbjct: 506 KRFFYEELLPDLKRQGKTIIIISHD 530
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 217 LSGGELQRFAIA-VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHD 275
LSGG+ QR IA +AVQ E+ + DEP S LD L+ +++ L + +IV H+
Sbjct: 152 LSGGQQQRLCIARAIAVQ-PEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVT-HN 209
Query: 276 LSVLDYLSDF 285
+ +SD
Sbjct: 210 MQQAARVSDM 219
|
Length = 264 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 381 GENGTGKTTFIRMLAGLLKPDS 402
G NG GKT+ +R+LAGL +PD+
Sbjct: 34 GPNGAGKTSLLRILAGLARPDA 55
|
Length = 204 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 9e-04
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270
++N +LSGG+++R AIA + +I + DEP++ LD K R + + + L + ++
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIV 199
Query: 271 VVEH 274
+V H
Sbjct: 200 LVTH 203
|
Length = 280 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 9e-04
Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 39/211 (18%)
Query: 360 GNFK-LKVVEGEFTDSQIIVMLGENGTGKTTFIRML------------AG--LLKPDSVE 404
G + LK + + +Q+ ++G +G GK+T +R L G L +
Sbjct: 12 GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY 71
Query: 405 DSDVEIPEF--NVSYKPQKISPKFQSTVRHLLH----QKIRDSYTHPQFVSDVMKPLLIE 458
D +++ E V QK +P S ++ + I+D + + ++++ L +
Sbjct: 72 DKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDK----KELDEIVEESLKK 127
Query: 459 QLMDQEV--------VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVI 510
+ EV + LSGG+ QR+ + L ++ L+DEP++ LD I K I
Sbjct: 128 AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP---IATGK-I 183
Query: 511 KRFILHAKK--TAFVVEHDFIMATYLADRVI 539
+ I KK T +V H+ A ++DR
Sbjct: 184 EELIQELKKKYTIVIVTHNMQQAARISDRTA 214
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 9e-04
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 188 LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYL 247
LD+ E +K D ++ + ++ LSGG+ QR IA ++ + DEP+S L
Sbjct: 120 LDKIVEWALKKAALWD-EVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSAL 178
Query: 248 DVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDF 285
D LK ++ L + + +++V H++ +SD+
Sbjct: 179 DPISTLKIEDLMVELKKEYT-IVIVTHNMQQASRVSDY 215
|
Length = 251 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 9e-04
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
LSGG+ QR IA +I +FDEP+S LD + ++ + L+ + +++V H++
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN-LKKDYTIVIVTHNM 213
Query: 277 SVLDYLSDF 285
+SD+
Sbjct: 214 QQAARISDY 222
|
Length = 258 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 9e-04
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 102 PGQVLGLVGTNGIGKSTALKIL-------AGKLKPNLGRFNNPPDWQEILTYFRGSELQN 154
PG+ L LVG +G GKST + L G++ N R + +LQ
Sbjct: 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSP----------GKLQA 398
Query: 155 YFTRILEDNLKAIIKPQYVDHIPKAVQG-------NVGQVLDQKDERDMKADLCTDLDLN 207
L +++ I + Y P+ G V +L K A L + L
Sbjct: 399 -----LRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLL 453
Query: 208 -QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
+ R + SGG+ QR IA N ++ + DE S LDV R Q++ LL
Sbjct: 454 PEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIR---GQIINLLLDLQ 510
Query: 267 SYV----IVVEHDLSVLDYLSDFICCLY 290
+ + HD++V++ +S + +Y
Sbjct: 511 RDFGIAYLFISHDMAVVERISHRVAVMY 538
|
Length = 623 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS 402
L V GE + +LGENG GK+T +++L+G+ PDS
Sbjct: 29 LTVRPGE-----VHALLGENGAGKSTLMKILSGVYPPDS 62
|
Length = 500 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 65/276 (23%), Positives = 109/276 (39%), Gaps = 75/276 (27%)
Query: 292 KPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYK 351
+P + G+ LP L G + EN+RFR +S E +
Sbjct: 440 EPRSAGLAALPE---------LRGAITFENIRFRYA----------PDSPEVLS------ 474
Query: 352 YPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSD 407
N L + GEF I ++G +G+GK+T ++L L P V+ D
Sbjct: 475 ---------NLNLDIKPGEF-----IGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVD 520
Query: 408 VEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRD--SYTHPQ-----------------FV 448
+ I + + Q + Q V L + IRD + +P F+
Sbjct: 521 LAIAD-PAWLRRQ-MGVVLQENV--LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFI 576
Query: 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAK 508
S++ P + ++ NLSGG+ QR+A+ L I + DE ++ LD E +
Sbjct: 577 SEL--PQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYE----SEA 630
Query: 509 VIKRFI--LHAKKTAFVVEHDFIMATYLADRVIVYE 542
+I R + + +T ++ H + DR+IV E
Sbjct: 631 LIMRNMREICRGRTVIIIAHR-LSTVRACDRIIVLE 665
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 18/196 (9%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRF---NNPPDW-QEILTYFR---GSELQNY 155
G+++ L+G NG GKST G LKP G P + ++ L R G QN
Sbjct: 28 GEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNP 87
Query: 156 FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVG 215
+D L A + V P N+G ++ ++R +A + + ++
Sbjct: 88 -----DDQLFAPTVEEDVAFGPL----NLGLSKEEVEKRVKEA--LKAVGMEGFENKPPH 136
Query: 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHD 275
LSGG+ +R AIA + EI + DEP+S LD + +++ L + +I+ HD
Sbjct: 137 HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD 196
Query: 276 LSVLDYLSDFICCLYG 291
+ ++ +D + +
Sbjct: 197 VDLVPVYADKVYVMSD 212
|
Length = 275 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 92 FKLHRLPVPR-------PGQVLGLVGTNGIGKSTALKILAGKLKPNLG------RFNNPP 138
L PV + G++L + G+ G GK++ L ++ G+L+P+ G R +
Sbjct: 45 LCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSS 104
Query: 139 DWQEILTYFRGSELQNYFTRILEDNL--KAIIKP-QYVDHIPKAVQGNVGQVLDQKDERD 195
+ I+ G+ +N + D K+++K Q + I K +KD
Sbjct: 105 QFSWIMP---GTIKENIIFGVSYDEYRYKSVVKACQLEEDITK---------FPEKD--- 149
Query: 196 MKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV 249
N V+ LSGG+ R ++A ++A++Y+ D P YLDV
Sbjct: 150 -----------NTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 35/200 (17%)
Query: 104 QVLGLVGTNGIGKSTALKILAGKLK--PNL---GRFNNPPDWQEILTYFRGSELQNYFTR 158
+V ++G +G GKST +K L ++ PN+ G N + GS +
Sbjct: 39 EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN-----------YNGSNILKGKVD 87
Query: 159 ILEDNLKAIIKPQYVDHIPKAVQGNVG-----------QVLDQKDERDMKADLCTDLDLN 207
++E + Q + P+++ NV + L + E+ +K D
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWD---- 143
Query: 208 QVIDR---NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
+V DR LSGG+ QR IA N ++ + DEP+S LD K +++ L
Sbjct: 144 EVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203
Query: 265 PNSYVIVVEHDLSVLDYLSD 284
+ VIV H++ +SD
Sbjct: 204 KYTIVIVT-HNMQQAARVSD 222
|
Length = 259 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 107 GLVGTNGIGKSTALKILAGKLKPNLG 132
GL+G NG GKST +KIL G L+P+ G
Sbjct: 31 GLIGANGCGKSTFMKILGGDLEPSAG 56
|
Length = 530 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 42/194 (21%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFN-----VSYKPQKISPKFQ 427
+ ++GE+G GK+T +R+L +S ++ D+ + PQ + F
Sbjct: 292 VAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQD-TVLFN 350
Query: 428 STVRHLLHQKIRDSYTHPQFVSDVMK---------PLLIEQL---MDQEV----VNLSGG 471
T+ + + Y P + I+ L D V + LSGG
Sbjct: 351 DTIAYNI------KYGRPD-ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGG 403
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLDS--EQRIVAAKVIKRFILHAKKTAFVVEHDFI 529
E QRVA+ + K I ++DE ++ LD+ EQ I AA ++ + A +T V+ H
Sbjct: 404 EKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA--LRE--VSAGRTTLVIAHR-- 457
Query: 530 MATYL-ADRVIVYE 542
++T + AD +IV +
Sbjct: 458 LSTIIDADEIIVLD 471
|
Length = 497 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 42/174 (24%)
Query: 92 FKLHRLPVPR-------PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144
F L+ PV + GQ+L + G+ G GKS+ L ++ G+L+P+ G+ +
Sbjct: 434 FSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHS------- 486
Query: 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNV--GQVLDQKDERD-MKA-DL 200
RI PQ +P ++ N+ G D+ +KA L
Sbjct: 487 ------------GRI-------SFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQL 527
Query: 201 CTDLDLNQVIDRNV-GD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV 249
D+ L D+ V G+ LSGG+ R ++A ++A++Y+ D P ++LDV
Sbjct: 528 EEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 24/83 (28%)
Query: 217 LSGGELQRFAIAVVAVQNAE---------IYMFDEPSSYL---DVKQRLKAAQVVRSLLR 264
LSGGE QR +A E +Y+ DEP++ L D+K+ L+ V+ L+
Sbjct: 823 LSGGEAQRVKLA------KELSKRSTGKTLYILDEPTTGLHFDDIKKLLE---VLHRLVD 873
Query: 265 PNSYVIVVEHDLSVL---DYLSD 284
+ VIV+EH+L V+ D++ D
Sbjct: 874 KGNTVIVIEHNLDVIKTADWIID 896
|
Length = 935 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 32/181 (17%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG------RFNN-PPDWQEILTYFRG---- 149
+PG++ ++G G G ST LK +A ++ P+ EI ++RG
Sbjct: 85 KPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPE--EIKKHYRGDVVY 142
Query: 150 -SELQNYFTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADL-CTDLDL 206
+E +F + + + L + + N + +++ AD+ L
Sbjct: 143 NAETDVHFPHLTVGETLDFAARCKTP--------QNRPDGVSREEYAKHIADVYMATYGL 194
Query: 207 NQVIDRNVGD-----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRS 261
+ + VG+ +SGGE +R +IA ++ A+I +D + LD A + +R+
Sbjct: 195 SHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSA---TALEFIRA 251
Query: 262 L 262
L
Sbjct: 252 L 252
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHD 275
LSGGE QR IA+ + E+ + DEP++ LDV + + Q++R L + N ++ + H+
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 276 LSVLDYLSD 284
LS++ L+D
Sbjct: 217 LSIVRKLAD 225
|
Length = 529 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 30/194 (15%)
Query: 373 DSQIIVMLGENGTGKTTFIRMLAGL--------------LKPDSVEDSDVEIPEFN---- 414
++Q+ M+G +G GK+TF+R + + + +V D+DV+
Sbjct: 64 ENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIG 123
Query: 415 -VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLL----IEQLMDQEVVNLS 469
V KP V + L + D + V + ++ ++ +D ++LS
Sbjct: 124 MVFQKPNPFPKSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLS 182
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI--LHAKKTAFVVEHD 527
GG+ QR+ + + ++ L+DEP++ LD VA I+ I L + T +V H+
Sbjct: 183 GGQQQRLCIARAIAPDPEVILMDEPASALDP----VATSKIEDLIEELAEEYTVVIVTHN 238
Query: 528 FIMATYLADRVIVY 541
A ++D+ V+
Sbjct: 239 MQQAARISDKTAVF 252
|
Length = 285 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
LSGGE +R +IA+ V N + DEP+S LD L+ ++R L +I H
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171
Query: 277 SVLDY-LSDFICCL 289
S + L D + L
Sbjct: 172 SSEIFELFDKLLLL 185
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|221966 pfam13187, Fer4_9, 4Fe-4S dicluster domain | Back alignment and domain information |
|---|
Score = 36.9 bits (85), Expect = 0.001
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 55 CIGCGICVKKCPFEAIQIINLPKDLDKDT 83
CIGCG CVK CP I N K + K
Sbjct: 2 CIGCGACVKVCPAGVIMRDNGGKVVVKCI 30
|
Length = 44 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.001
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 205 DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE---IYMFDEPSSYLDVKQRLKAAQVVRS 261
DL +++ + +S G + A+ + + + + DEP + L K K ++++
Sbjct: 178 DLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKE 237
Query: 262 LLRPNSYVIVVEHDLSVLD 280
L + +I H +LD
Sbjct: 238 LSEKGAQLIFTTHSPLLLD 256
|
Length = 256 |
| >gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 7 RIAIVSSDRCK-PKKCRQ----ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGIC 61
RI ++ + + C C +SCP G + V + ++ +++ CIGC C
Sbjct: 41 RITVIKHQQQRSAVTCHHCEDAPCARSCP---NGAI-SHVDDSIQV---NQQKCIGCKSC 93
Query: 62 VKKCPFEAIQIINLP--KDLDKDTTHR 86
V CPF +QI+ P K T H+
Sbjct: 94 VVACPFGTMQIVLTPVAAGKVKATAHK 120
|
Length = 654 |
| >gnl|CDD|205417 pfam13237, Fer4_10, 4Fe-4S dicluster domain | Back alignment and domain information |
|---|
Score = 37.0 bits (85), Expect = 0.001
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 18 PKKCRQ--ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCP 66
P KC C +CP + + CIGCG CV+ CP
Sbjct: 4 PDKCIGCGRCVAACPARVGAGA--IRDEGGAVEIDPDR-CIGCGACVEVCP 51
|
This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich. Length = 51 |
| >gnl|CDD|221963 pfam13183, Fer4_8, 4Fe-4S dicluster domain | Back alignment and domain information |
|---|
Score = 36.8 bits (85), Expect = 0.001
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 20 KCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCP 66
+C C+ CPV + +A C CG C + CP
Sbjct: 7 RCGA-CRAVCPVYRALGRFSGDPRGGALA-AELWSCTSCGACTEVCP 51
|
Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters. Length = 54 |
| >gnl|CDD|205077 pfam12797, Fer4_2, 4Fe-4S binding domain | Back alignment and domain information |
|---|
Score = 35.9 bits (83), Expect = 0.001
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 46 KIAFISEELCIGCGICVKKCPF 67
I E+ CIGCG CV CP
Sbjct: 1 PKPLIDEDKCIGCGACVSACPA 22
|
This superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Length = 22 |
| >gnl|CDD|221801 pfam12838, Fer4_7, 4Fe-4S dicluster domain | Back alignment and domain information |
|---|
Score = 36.4 bits (84), Expect = 0.001
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 55 CIGCGICVKKCPFEAIQI 72
CIGCG CV+ CP+ AI +
Sbjct: 1 CIGCGACVRACPYGAITL 18
|
Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters. Length = 48 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252
L+L ++DR +LSGG+ QR A+ V+ +++FDEP S LD K R
Sbjct: 122 LELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLR 170
|
Length = 356 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 61/251 (24%), Positives = 98/251 (39%), Gaps = 61/251 (24%)
Query: 82 DTTHRYGPNTF--KLHRLPVPRPGQVLGLVGTNGIGKSTALKIL---------------- 123
D T R+G T L+ G+ + L+G +G GKST L+IL
Sbjct: 5 DVTKRFGILTVLDGLNFSVAA--GEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGE 62
Query: 124 --------AGKLKP----NLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQ 171
G L P +L + N +I F+ L + T + DN+ P
Sbjct: 63 QLYHMPGRNGPLVPADEKHLRQMRN-----KIGMVFQSFNLFPHKTVL--DNV--TEAPV 113
Query: 172 YVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231
V + +A + ++R M +L + L D LSGG+ QR AIA
Sbjct: 114 LVLGMARA----------EAEKRAM--ELLDMVGLADKADHMPAQLSGGQQQRVAIARAL 161
Query: 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY-VIVVEHDLSVLDYLSDFICCLY 290
++ +FDE +S LD + + V+R L + +++V H++ +D +C
Sbjct: 162 AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFD 221
Query: 291 -------GKPG 294
GKP
Sbjct: 222 KGRIVEQGKPD 232
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY-VIVVEHD 275
LSGG+ QR A+A + + + DEP LD R++ ++ SL + + + V++V HD
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Query: 276 LS 277
+S
Sbjct: 194 VS 195
|
Length = 257 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.002
Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLG-------RFNNPPDW---QEILTYFRGSEL 152
G+ + ++G NG GKST +++ G + G W ++I F+ +
Sbjct: 33 GEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDN 92
Query: 153 QNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDR 212
Q + +ED++ ++ Q IP+ +++ + DE + ++ LD R
Sbjct: 93 Q-FVGATVEDDVAFGMENQ---GIPRE------EMIKRVDEALLAVNM---LDFKT---R 136
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPNSYVIV 271
LSGG+ QR A+A + EI + DE +S LD R + +V+ + + V+
Sbjct: 137 EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLS 196
Query: 272 VEHDL 276
+ HDL
Sbjct: 197 ITHDL 201
|
Length = 277 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDS--EQRIVAAKVIKRFILHAKKTAFVVE 525
LSGGE +R+ + L A + L+DEP+ LD+ E++I+ ++ + KT ++
Sbjct: 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILE--LLAEHAQN--KTVLMIT 531
Query: 526 H 526
H
Sbjct: 532 H 532
|
Length = 574 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 34/226 (15%)
Query: 360 GNFK-LKVVEGEFTDSQIIVMLGENGTGKTTFIRML------------AGLLKPDSVED- 405
G F+ +K V + + ++G +G GK+TF+R + G L D ED
Sbjct: 50 GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG-EDI 108
Query: 406 ----SDVEIPEFNVSYKPQKISPKFQSTVRHLLH----QKIRDSYTHPQFVSDVM-KPLL 456
+D + + QK +P +S ++ + I D + V + K L
Sbjct: 109 YGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAAL 168
Query: 457 IEQL---MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF 513
+++ +D+ + LSGG+ QR+ + L +I L+DEP++ LD + +I+
Sbjct: 169 WDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE- 227
Query: 514 ILHAKKTAFVVEHDFIMATYLADRVI-VYEGQPSVDCVANAPQSLL 558
L T +V H+ A+ ++D + YEG V +AP + L
Sbjct: 228 -LRGSYTIMIVTHNMQQASRVSDYTMFFYEG----VLVEHAPTAQL 268
|
Length = 286 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 39/177 (22%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNV-SYKPQKI 422
LK V G +++ ++G +G GKTT + LA V + + + + + I
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAI 100
Query: 423 SPKFQS--------TVR-HLL---HQKIRDSYTHPQFVSDVMKPLLIEQLMDQ------- 463
S Q TVR HL+ H ++ T + K +++++
Sbjct: 101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE------KRERVDEVLQALGLRKCA 154
Query: 464 --------EVVNLSGGELQRVAL-CLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK 511
V LSGGE +R+A L P + DEP++ LDS +A V++
Sbjct: 155 NTRIGVPGRVKGLSGGERKRLAFASELLTDPP-LLFCDEPTSGLDS---FMAYSVVQ 207
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 65/190 (34%)
Query: 108 LVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ-NYFTRILEDNLKA 166
L+G NG GK+T LK++ G+L+ + GR + G++L+ YF D +A
Sbjct: 350 LIGPNGCGKTTLLKLMLGQLQADSGRIH------------CGTKLEVAYF-----DQHRA 392
Query: 167 IIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRN------------- 213
+ P+ K V N+ + K E + +N R+
Sbjct: 393 ELDPE------KTVMDNLA---EGKQE----------VMVNGR-PRHVLGYLQDFLFHPK 432
Query: 214 -----VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY 268
V LSGGE R +A + ++ + + + DEP++ LDV + +++ LL +SY
Sbjct: 433 RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV----ETLELLEELL--DSY 486
Query: 269 ---VIVVEHD 275
V++V HD
Sbjct: 487 QGTVLLVSHD 496
|
Length = 635 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 21/192 (10%)
Query: 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL--TYFRGSELQNYFTRILED 162
+ L+G +G GKST L+ L R N+ + +I + G + + ILE
Sbjct: 35 ITALIGPSGCGKSTFLR--------TLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86
Query: 163 NLKAIIKPQYVDHIPKAVQGNVG---QVLDQKDERDM----KADLCTDLDLNQVID---R 212
K + Q + ++ N+ ++ KD++ + + L N+V D
Sbjct: 87 RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNT 146
Query: 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVV 272
N LSGG+ QR IA + + DEP+S LD K +++ + L+ + +I+V
Sbjct: 147 NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN-LKESYTIIIV 205
Query: 273 EHDLSVLDYLSD 284
H++ +SD
Sbjct: 206 THNMQQAGRISD 217
|
Length = 254 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 29/202 (14%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRML------------AGLLKPDSVE---D 405
N LK + Q+ ++G +G GK+T +R L G L D + +
Sbjct: 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN 75
Query: 406 SDVEIPEFNVSYKPQKISP----KFQSTVRHLLHQKIRDSYTHPQFVSDVMK-PLLIEQL 460
DV V QK +P +++ L Q I+D + V ++ L +++
Sbjct: 76 IDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV 135
Query: 461 MDQ---EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517
D+ LSGG+ QR+ + + D+ L+DEP++ LD +A I+ +
Sbjct: 136 KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP----IATHKIEELMEEL 191
Query: 518 KK--TAFVVEHDFIMATYLADR 537
KK T +V H A ++DR
Sbjct: 192 KKNYTIVIVTHSMQQARRISDR 213
|
Length = 249 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 30/199 (15%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDS-------VEDSDVEIPEFN 414
L + +++ ++G +G GK+T +R + L P ++ +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 415 VSYKPQKISPKFQ-------STVRHLLH----QKIRDSYTHPQFVSDVMK-PLLIEQLMD 462
V +KI FQ S ++ + ++ T V +K L +++ D
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD 141
Query: 463 Q---EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK 519
+ ++LSGG+ QR+ + L ++ L+DEP + LD I AK I+ I KK
Sbjct: 142 RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP---IATAK-IEDLIEDLKK 197
Query: 520 --TAFVVEHDFIMATYLAD 536
T +V H+ A ++D
Sbjct: 198 EYTVIIVTHNMQQAARVSD 216
|
Length = 253 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 211 DRNVGDLSGGELQRFAIA--VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY 268
+R + LSGGE +R A+A + A Y+ DEPS L + K V++ L +
Sbjct: 471 ERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNT 530
Query: 269 VIVVEHD 275
V++VEHD
Sbjct: 531 VLLVEHD 537
|
Length = 1809 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 14/85 (16%)
Query: 462 DQEVVNLSGGELQRVALCLCLGKPADI----YLIDEPSAYL---DSEQRIVAAKVIKRFI 514
++ + LSGGE +R AL LG A++ Y++DEPS L D+ + I VIK+ +
Sbjct: 471 ERALATLSGGEQERTALAKHLG--AELIGITYILDEPSIGLHPQDTHKLI---NVIKK-L 524
Query: 515 LHAKKTAFVVEHDFIMATYLADRVI 539
T +VEHD M + LADR+I
Sbjct: 525 RDQGNTVLLVEHDEQMIS-LADRII 548
|
Length = 1809 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 187 VLDQKDERDMKADLCTDLDLNQVIDR---NVGDLSGGELQRFAIA-VVAVQNAEIYMFDE 242
VLD+ ER ++ D +V DR N LSGG+ QR IA +A+ E+ + DE
Sbjct: 140 VLDEAVERSLRGAALWD----EVKDRLHENAFGLSGGQQQRLVIARAIAI-EPEVLLLDE 194
Query: 243 PSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
P+S LD LK +++ L + VIV
Sbjct: 195 PTSALDPISTLKIEELITELKSKYTIVIV 223
|
Length = 272 |
| >gnl|CDD|233903 TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, group A | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 26/127 (20%)
Query: 14 DRCKPKKCRQECKKSCPVVKTG--------KLCIEVTPAAKIAFISEELCIGCGICVKKC 65
D K C + C ++C V+ EV P E CIGCG C C
Sbjct: 5 DMSKCIGCGR-CVRACTNVQIVGALGFLNRGGKTEVAPKFGRLL-DESNCIGCGQCSLVC 62
Query: 66 PFEAI----QIINLPKDLDKDTTHRYG---PNTFKLHRLPVPRPGQVLGL-VGTNGIGK- 116
P AI + + K L P R+ + G+ G+ +GT+ GK
Sbjct: 63 PVGAITEKDHVDRVLKALADPKKVVVVQIAPAV----RVAL---GEEFGMPIGTDVTGKM 115
Query: 117 STALKIL 123
AL+ L
Sbjct: 116 VAALRKL 122
|
This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length. Length = 374 |
| >gnl|CDD|237510 PRK13795, PRK13795, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 4 RLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVK 63
+ + + C C C +CP I + + + EE CI CG C +
Sbjct: 571 KDAARLLRRAAECV--GCG-VCVGACPTG-----AIRIEEGKRKISVDEEKCIHCGKCTE 622
Query: 64 KCPFEAIQIIN 74
CP ++ +
Sbjct: 623 VCP--VVKYKD 631
|
Length = 636 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 34/204 (16%)
Query: 99 VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNN--PPDWQEILTYFRGSELQNYF 156
+PR G+V L+G +G GKST L+ +L R N+ + F G++L Y
Sbjct: 36 IPR-GKVTALIGPSGCGKSTVLR--------SLNRMNDLIEGCSLKGRVLFDGTDL--YD 84
Query: 157 TRI--LEDNLKAIIKPQYVDHIPKAVQGNVG---------QVLDQKDERDMKA----DLC 201
R+ +E + + Q + PK++ N+ +D+ ER ++ D C
Sbjct: 85 PRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC 144
Query: 202 TDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRS 261
D LN+ + LSGG+ QR IA E+ + DEP S LD LK + +
Sbjct: 145 KD-KLNE----SGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHE 199
Query: 262 LLRPNSYVIVVEHDLSVLDYLSDF 285
L+ N +++V H++ +SD
Sbjct: 200 -LKKNFTIVIVTHNMQQAVRVSDM 222
|
Length = 269 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 35/201 (17%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP--PDWQEIL-TYFRG----SELQ 153
+ G+VL LVG +G GKS G L + + D + + RG + +Q
Sbjct: 27 QRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQ 86
Query: 154 N---YFTRILE------DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDL 204
N F + + A+ KP + A++ VG L+
Sbjct: 87 NPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEA-VG--LE--------------- 128
Query: 205 DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
+ +V+ ++SGG LQR IA+ + A + DEP++ LDV + + ++ S+++
Sbjct: 129 NAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQ 188
Query: 265 PNSY-VIVVEHDLSVLDYLSD 284
+ +++V HD+ V+ L+D
Sbjct: 189 KRALGMLLVTHDMGVVARLAD 209
|
Length = 254 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.002
Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 31/226 (13%)
Query: 81 KDTTHRYGPNTFKLHRLPVP-RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPD 139
KD YG N LH + + ++ L+G +G GKST L+ L R N+ +
Sbjct: 8 KDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCL--------NRMNDDIE 58
Query: 140 WQEIL--TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVG-----------Q 186
+I F G + ++E + + Q P +V NV +
Sbjct: 59 NIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKE 118
Query: 187 VLDQKDERDMK-ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSS 245
++DQ+ E +K A + + N +DRN SGG+ QR IA ++ + DEP+S
Sbjct: 119 LIDQRVEESLKQAAIWKETKDN--LDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTS 176
Query: 246 YLDVKQRLKAAQVVRSL--LRPNSYVIVVEHDLSVLDYLSDFICCL 289
LD + ++++ +L L+ I+V H+L +SD L
Sbjct: 177 ALD---PISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFL 219
|
Length = 251 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 36/197 (18%)
Query: 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLL 434
+++ ++GE+G+GK+T + LAG L PD S ++ ++ R L+
Sbjct: 30 EVLGIVGESGSGKSTLLGCLAGRLAPDHGT-----ATYIMRSGAELELYQLSEAERRRLM 84
Query: 435 -------HQKIRDSYTHP-----------------------QFVSDVMKPLLIEQ-LMDQ 463
HQ RD D ++ + I+ +D
Sbjct: 85 RTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPTRIDD 144
Query: 464 EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFV 523
SGG QR+ + L + +DEP+ LD + +++ + +
Sbjct: 145 LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVII 204
Query: 524 VEHDFIMATYLADRVIV 540
V HD +A LA R++V
Sbjct: 205 VTHDLGVARLLAQRLLV 221
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDV- 408
+ YPT T L+ V ++ ++G +G+GK+T + +L +P + V
Sbjct: 19 FAYPTRPDTL---VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP---QGGQVL 72
Query: 409 ----EIPEFNVSYKPQKISPKFQSTVRHLLHQKIRD--SYTHPQFVSDVMKPL------- 455
I ++ Y K+S Q V L + ++D +Y + +K
Sbjct: 73 LDGKPISQYEHKYLHSKVSLVGQEPV--LFARSLQDNIAYGLQSCSFECVKEAAQKAHAH 130
Query: 456 ----LIEQLMDQEV----VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAA 507
+ D EV LSGG+ QRVA+ L + + ++DE ++ LD+E
Sbjct: 131 SFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQ 190
Query: 508 KVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543
+ + + ++T V+ H + AD+++V +G
Sbjct: 191 QALYDW--PERRTVLVIAHR-LSTVERADQILVLDG 223
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526
+LSGG+ QR+A+ L + I L+DE ++ LDS + K I A KT + H
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417
Query: 527 DFIMATYLADRVIVY 541
I + +D+++V+
Sbjct: 1418 R-IASIKRSDKIVVF 1431
|
Length = 1466 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127
PG+V L+G NG GKST LK LAG L
Sbjct: 25 EPGRVTALLGRNGAGKSTLLKALAGDL 51
|
Length = 272 |
| >gnl|CDD|224071 COG1149, COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 45 AKIAFISEELCIGCGICVKKCPFEAIQII 73
+I I E CI CG C + C F AI ++
Sbjct: 61 GEIPEIDPEKCIRCGKCAEVCRFGAIVVL 89
|
Length = 284 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 207 NQVIDR---NVGDLSGGELQRFAIA-VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL 262
N+V DR G LSGG+ QR IA +AV+ ++ + DEP S LD L ++ L
Sbjct: 136 NEVKDRLDKPGGGLSGGQQQRLCIARAIAVE-PDVLLMDEPCSALDPISTLAIEDLINEL 194
Query: 263 LRPNSYVIV-VEHDLS----VLDYLSDFICCLYGKPG 294
Y IV V H++ V D + F GKPG
Sbjct: 195 --KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPG 229
|
Length = 258 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 20/73 (27%), Positives = 33/73 (45%)
Query: 205 DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
+L ID+ V S G R A +V +I + DE + D + K + + L+
Sbjct: 136 ELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE 195
Query: 265 PNSYVIVVEHDLS 277
N +++V HDL
Sbjct: 196 KNKTIVLVSHDLG 208
|
Length = 249 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.004
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLG 132
PG +G++G NG GKST L+I+AG K G
Sbjct: 32 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFEG 62
|
Length = 556 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.004
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-----NSYVI 270
+LSGG+ QR ++A NA+IY+FD+P S +D + ++ P N I
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV---GKHIFEHVIGPEGVLKNKTRI 816
Query: 271 VVEHDLSVLDYLSDFICCLYG----KPGAYGVVTLPFSVREG-INIFLAGFVPTENLRFR 325
+V H +S L + D I + G + G+Y + R+G FL + P E
Sbjct: 817 LVTHGISYLPQV-DVIIVMSGGKISEMGSYQELL----QRDGAFAEFLRTYAPDEQQGHL 871
Query: 326 DESLTFRVAETPQES 340
++S T V+ +E+
Sbjct: 872 EDSWTALVSGEGKEA 886
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV-VE 273
+LSGG+ QR IA +I + DEP++ +D K +++ L Y IV V
Sbjct: 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL--KKEYTIVLVT 205
Query: 274 HDLSVLDYLSDFICCLY 290
H + +SD++ LY
Sbjct: 206 HSPAQAARVSDYVAFLY 222
|
Length = 253 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 463 QEVVNLSGGELQRVALCLCLGKPAD---IYLIDEPSAYL--DSEQRIVAAKVIKRFILHA 517
Q LSGGE QR+ L L K + +Y++DEP+ L ++++ V++R ++
Sbjct: 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE--VLQR-LVDK 221
Query: 518 KKTAFVVEHDF-IMATYLADRVI 539
T V+EH+ ++ AD +I
Sbjct: 222 GNTVVVIEHNLDVIKC--ADWII 242
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY-VIVVEHD 275
LSGG QR IA+ + + DEP++ LDV + + Q+++ L + S VI + HD
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228
Query: 276 LSVLDYLSDFICCLY 290
+ V+ ++D + +Y
Sbjct: 229 MGVVAEIADRVLVMY 243
|
Length = 623 |
| >gnl|CDD|221801 pfam12838, Fer4_7, 4Fe-4S dicluster domain | Back alignment and domain information |
|---|
Score = 35.6 bits (82), Expect = 0.004
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 20 KCRQECKKSCPVVKTGKLCIEVTPAAK---IAFISEELCIGCGICVKKCPF 67
C C ++CP I + I + C GCG CV CP
Sbjct: 3 GCGA-CVRACPYG-----AITLDEEGGKKGTVEIDPDKCTGCGACVAVCPT 47
|
Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters. Length = 48 |
| >gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 2 SDRLTRIAIV-SSDRCKPKKCRQ----ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCI 56
SD RI +V P C C +CPV +T + + E+ CI
Sbjct: 36 SDFRPRIHVVGKGQAANPVACHHCNNAPCVTACPVNA-------LTFQSDSVQLDEQKCI 88
Query: 57 GCGICVKKCPFEAIQII-NLPKDLDKDTTHRYG 88
GC C CPF ++++ + + D G
Sbjct: 89 GCKRCAIACPFGVVEMVDTIAQKCDLCNQRSSG 121
|
Length = 639 |
| >gnl|CDD|239384 cd03110, Fer4_NifH_child, This protein family's function is unkown | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 40 EVTPAAKIAFISEELCIGCGICVK 63
+ K A I ELCI CG+C K
Sbjct: 52 DFIVGGKKAVIDPELCISCGLCGK 75
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. Length = 179 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 605 | |||
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-181 Score=1391.70 Aligned_cols=591 Identities=56% Similarity=0.981 Sum_probs=571.2
Q ss_pred CceEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecCCcccCCCc
Q 040300 4 RLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDT 83 (605)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~~~~~~~ 83 (605)
+.|||||||+|+||||||++||++|||+||||++||+++++++||+|||+||||||||||||||+||+|+|||++|++++
T Consensus 1 ~~~riAvvd~D~C~PkkC~~eC~~yCP~vrtg~~~I~i~~~~gkpvIsE~lCiGCGICvkkCPF~AI~IvnLP~eLe~e~ 80 (591)
T COG1245 1 KLMRIAVVDYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDTGKPVISEELCIGCGICVKKCPFDAISIVNLPEELEEEV 80 (591)
T ss_pred CCceEEEeehhccCccccchhhhhcCCCccCCCeeEEecCCCCCceeEhhhhccchhhhccCCcceEEEecCchhhcccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHH
Q 040300 84 THRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDN 163 (605)
Q Consensus 84 ~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 163 (605)
+||||.|+|+|++||+|++|+++||+|+||.||||.+|||+|.++||+|+.+.+|+|++++.+|+|+++|+||.++++++
T Consensus 81 vHRYg~NgFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~ 160 (591)
T COG1245 81 VHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGE 160 (591)
T ss_pred eeeccCCceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 040300 164 LKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEP 243 (605)
Q Consensus 164 ~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEP 243 (605)
++++.||||++.+|+.++|++.+++++.+++.+.+++++.|+|+++++|.+++|||||+||+|||+|+++++|+|+||||
T Consensus 161 ~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEp 240 (591)
T COG1245 161 LRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEP 240 (591)
T ss_pred cceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCCCcccc
Q 040300 244 SSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLR 323 (605)
Q Consensus 244 ts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~~e~~~ 323 (605)
|||||+.+|..++++|++|++.+++||+|+|||+.+|+++|.|+++||.|++||+++.|+++|+|||.|+.||+|+||+|
T Consensus 241 sSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~pg~YGvvs~p~svr~gIN~yL~Gyl~~EN~R 320 (591)
T COG1245 241 SSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGEPGVYGVVSKPKSVRVGINEYLKGYLPEENVR 320 (591)
T ss_pred cccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecCCccceEeccchHHHHHHHHHHhccCchhccc
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 324 FRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 324 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
||++++.|+..++.+. . .... .++|+++.+.+++|.|++.+|+++.||+++++||||.|||||+++|||.++|++|
T Consensus 321 ~R~~~I~F~~~~~~~~-~--~~~~-lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg 396 (591)
T COG1245 321 FRPEEIEFEEKPPRDD-K--ARDT-LVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG 396 (591)
T ss_pred ccccceeeeccCcccc-c--ccce-eeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCC
Confidence 9999999987765443 1 1134 7899999999999999999999999999999999999999999999999999998
Q ss_pred eeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc
Q 040300 404 EDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 404 ~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
. ....++||+||++.+.++.||.+++....+..+.+.++..+++++|+|++++++++.+|||||+||||||.||+
T Consensus 397 ~-----~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~ 471 (591)
T COG1245 397 S-----EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALS 471 (591)
T ss_pred C-----CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhc
Confidence 6 34568999999999999999999987766555777889999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL 563 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~ 563 (605)
+++||||||||+|+||+++|..+.++|++++.+.++|+++|.||+.++++++||++||+|+|++.+.+.+|.+++++||.
T Consensus 472 reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN~ 551 (591)
T COG1245 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNR 551 (591)
T ss_pred cccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecceEEEecCCCCcceeecCCCCCcHhhhhcCCcccc
Q 040300 564 FLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYL 603 (605)
Q Consensus 564 ~l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~ 603 (605)
||+++++|||||++|+|||+||+||++|||||+.|+|||+
T Consensus 552 FLk~l~vTFRRD~~t~RPRvNK~gS~lDreQKe~g~Yyy~ 591 (591)
T COG1245 552 FLKNLGVTFRRDPETGRPRVNKPGSQLDREQKERGEYYYA 591 (591)
T ss_pred HHHHcCcEEecCcccCCCCcCCCcchhhHHHHhccCcccC
Confidence 9999999999999999999999999999999999999995
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-151 Score=1156.46 Aligned_cols=592 Identities=79% Similarity=1.277 Sum_probs=572.6
Q ss_pred CCCCceEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecCCcccC
Q 040300 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLD 80 (605)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~~~~ 80 (605)
|+|+++|||||+.|+||||||+|||+|.|||||+|++||+|+++ |+|||+||||||||||||||+||+|+|||.+++
T Consensus 1 ~~~~~triaiv~~d~ckpk~c~~eck~~cpv~~~gk~ci~V~~~---~~ise~lCigcgicvkkcpf~ai~iinlp~nl~ 77 (592)
T KOG0063|consen 1 MSDKLTRIAIVSEDKCKPKKCRQECKKSCPVVRTGKLCIEVTPT---AFISEELCIGCGICVKKCPFEAIQIINLPTNLE 77 (592)
T ss_pred CCCccceEEEeeccccCchHHHHHHHhcCCcccccceEEEEcCc---chhhHhhhccccceeeccCcceEEecCCchhHh
Confidence 78999999999999999999999999999999999999999886 999999999999999999999999999999999
Q ss_pred CCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
++++|||+.|+|++|+||.|++|+++|+||.||.||||.+|+|+|.++|+.|.+..+|+|++++.+|+|+++|+||++.+
T Consensus 78 ~etthry~~n~fKlhrlp~prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~l 157 (592)
T KOG0063|consen 78 KETTHRYSANSFKLHRLPIPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL 157 (592)
T ss_pred hhhhhhhcccceeeccCCCCCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
+++++...+|||++++|+..+++++..+...+++....++++.+.|.++++|.+.+|||||.||++||.+.++++|+|+|
T Consensus 158 e~~lk~~~kpQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMF 237 (592)
T KOG0063|consen 158 EDNLKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMF 237 (592)
T ss_pred cccccCcCChHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEe
Confidence 99999999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCCCc
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTE 320 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~~e 320 (605)
|||++|||+++|...+..|++|.....+||+|+||++++++++|.|++|||.|++||+++.|+++++++|.|++|+.|+|
T Consensus 238 DEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniFl~g~ipte 317 (592)
T KOG0063|consen 238 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGLIPTE 317 (592)
T ss_pred cCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEecCCccceEEEeccchhhhhhhhhhccCCcc
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 321 NLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 321 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
|+|||.+.+.|.+++.... . .+.. .++||++++.+++|.|.+..|++.++|++..+|.||.|||||+++++|.++|
T Consensus 318 n~rfR~~~l~f~~~~~~~~--e-k~~~-~y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~p 393 (592)
T KOG0063|consen 318 NLRFRPECLVFLASDLSSE--D-RRTG-RYSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKP 393 (592)
T ss_pred cccccchhheeeeccccch--h-hhhh-eeccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCC
Confidence 9999999999988764433 1 2333 8999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHH
Q 040300 401 DSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL 480 (605)
Q Consensus 401 ~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~ 480 (605)
++|. +++..+++|+||.+++.++.||+++++..++..+.+++++.+++++|.++++.|+.+.+|||||+||||||.
T Consensus 394 d~~~----e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~K 469 (592)
T KOG0063|consen 394 DEGG----EIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALAL 469 (592)
T ss_pred CccC----cccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHH
Confidence 9874 478889999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 481 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|.+.+++||.|||+++||.++|....+.+++++.+.++|.++|.||+.++.++|||++||+|.|.....+.+|+++.++
T Consensus 470 OGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~g 549 (592)
T KOG0063|consen 470 CLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAG 549 (592)
T ss_pred hcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHH
Confidence 99999999999999999999999999999999999899999999999999999999999999999988899999999999
Q ss_pred ccccceecceEEEecCCCCcceeecCCCCCcHhhhhcCCcccc
Q 040300 561 MNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYL 603 (605)
Q Consensus 561 ~~~~l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~ 603 (605)
||.|++.+++||||||.+.|||+||.+|.+|+|||+.|.|||+
T Consensus 550 mN~fl~~l~itfRrd~n~~rprink~~s~~d~~qK~~g~~ffl 592 (592)
T KOG0063|consen 550 MNRFLKNLDITFRRDPNNFRPRINKLDSQKDVEQKKSGQYFFL 592 (592)
T ss_pred hHHHHhhcceeeccCCcccccccchhhHHHHHHHhhcCCcccC
Confidence 9999999999999999999999999999999999999999985
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-147 Score=1234.67 Aligned_cols=590 Identities=50% Similarity=0.905 Sum_probs=523.0
Q ss_pred ceEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecCCcccCCCce
Q 040300 5 LTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTT 84 (605)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~~~~~~~~ 84 (605)
.+||||||+|+|||+||++||++|||+||||++||++++++++|+|||+||||||||||||||+||+|+|||++|+++++
T Consensus 1 ~~~~~~~~~~~c~~~~c~~~c~~~cp~~~~~~~~~~~~~~~~~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p~~~~~~~~ 80 (590)
T PRK13409 1 MMRIAVVDYDRCQPKKCNYECIKYCPVVRTGEETIEIDEDDGKPVISEELCIGCGICVKKCPFDAISIVNLPEELEEEPV 80 (590)
T ss_pred CceEEEeeccccCcchhhhhHHhhCCCcccCCeEEEEcCCCCCceeeHhhccccccccccCCcceEEEeeCchhhccCce
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHH
Q 040300 85 HRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNL 164 (605)
Q Consensus 85 ~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 164 (605)
|+||.|+|.|+++|.+++|+++||+|+||||||||+|+|+|+++|+.|++..++.|++++.+|+|.++++++..+.....
T Consensus 81 ~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~ 160 (590)
T PRK13409 81 HRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEI 160 (590)
T ss_pred EEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999989999999999999999988765443344
Q ss_pred HHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 040300 165 KAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPS 244 (605)
Q Consensus 165 ~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPt 244 (605)
+..+++||+++.|..+.+++.+.+...+.+++++++++.++|.+.+++++.+|||||+|||+||+||+++|++|||||||
T Consensus 161 ~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPt 240 (590)
T PRK13409 161 KVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPT 240 (590)
T ss_pred ceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 55678999998887766777777665556678899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCCCccccc
Q 040300 245 SYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRF 324 (605)
Q Consensus 245 s~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~~e~~~~ 324 (605)
|+||+.++.+++++|+++.+ |+|||+||||+++++++||+|++|+|+++.||+++.+.+.+++++.|+.++.+.+++++
T Consensus 241 s~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~~g~~g~~~~~~~~~~~i~~~~~~~~~~e~~~~ 319 (590)
T PRK13409 241 SYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGEPGAYGVVSKPKGVRVGINEYLKGYLPEENMRI 319 (590)
T ss_pred CCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecchhHHHHhHHHHHHhcchhhhhhc
Confidence 99999999999999999988 99999999999999999999999999999999988888888889999888887777776
Q ss_pred ccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeee
Q 040300 325 RDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404 (605)
Q Consensus 325 r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~ 404 (605)
+..+..++...+... . .... .+++.+.++.++++.|+..++++++||+++|+||||||||||+|+|+|+++|++|+
T Consensus 320 ~~~~~~~~~~~~~~~-~--~~~~-~l~~~~ls~~~~~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~ 395 (590)
T PRK13409 320 RPEPIEFEERPPRDE-S--ERET-LVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE 395 (590)
T ss_pred cccCcceecCCCccc-c--CCce-EEEEcceEEEECCEEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 644433332211100 0 0111 34444444445555566667777777999999999999999999999999999999
Q ss_pred eeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 405 DSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 405 i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
+.. . .+++|+||+....+..||.+++.... ..+.....+.++++.+++.+..++++.+|||||||||+|||||++
T Consensus 396 I~~---~-~~i~y~~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~ 470 (590)
T PRK13409 396 VDP---E-LKISYKPQYIKPDYDGTVEDLLRSIT-DDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR 470 (590)
T ss_pred EEE---e-eeEEEecccccCCCCCcHHHHHHHHh-hhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 742 1 47999999987677889999875421 112233467889999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccccc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF 564 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~ 564 (605)
+|++|||||||+|||+.++..+.++|+++.++.|+|||+||||++++.++|||+++|+|+++..+.+.+|.++.++||.|
T Consensus 471 ~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~~~~~g~~~~~~~~~~~~~~~ 550 (590)
T PRK13409 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGEPGKHGHASGPMDMREGMNRF 550 (590)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCcceeeeecCCchhHHHHHHHH
Confidence 99999999999999999999999999999776789999999999999999999999999887777788899999999999
Q ss_pred ceecceEEEecCCCCcceeecCCCCCcHhhhhcCCccccC
Q 040300 565 LSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYLD 604 (605)
Q Consensus 565 l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~~ 604 (605)
++.+++|||||++++||||||++|++|||||++|+|||++
T Consensus 551 l~~~~i~~~~d~~~~~~~i~~~~s~~d~~q~~~~~~~~~~ 590 (590)
T PRK13409 551 LKELGITFRRDEETGRPRVNKPGSYLDREQKERGEYYYAD 590 (590)
T ss_pred HHHcCCEEEECCCCCCcCcCCCcchhhHHHHhcCCeeccC
Confidence 9999999999999999999999999999999999999974
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-73 Score=611.39 Aligned_cols=459 Identities=24% Similarity=0.351 Sum_probs=327.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC----CceeeCCC-Ch--
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN----LGRFNNPP-DW-- 140 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~----~G~i~~~~-~~-- 140 (605)
.++|.||..+|... +.....+.+++ .+.+||++||||++||||||++++|.|+++++ .|++.... +.
T Consensus 5 lL~V~nL~v~~~~~-----~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~ 79 (539)
T COG1123 5 LLEVENLTVEFATD-----GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG 79 (539)
T ss_pred eEEEeceEEEEecC-----CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc
Confidence 79999998876533 22223455555 35899999999999999999999999999988 68774211 10
Q ss_pred --hhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhc-hhhhh------cCchHHHHHHHHHHhhcCCchhh-
Q 040300 141 --QEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG-NVGQV------LDQKDERDMKADLCTDLDLNQVI- 210 (605)
Q Consensus 141 --~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~-~v~~~------l~~~~~~~~~~~~l~~l~L~~~~- 210 (605)
......++|..+...|+... ..+. |...-+ .+.+. ....+.++++.++++.+||.+-.
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~-----~sln-------P~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~ 147 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPM-----TSLN-------PVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPER 147 (539)
T ss_pred CCHHHHHHhccccEEEEecCch-----hhcC-------chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhh
Confidence 11123344443322221100 0011 111001 11111 12345678899999999997644
Q ss_pred -cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEE
Q 040300 211 -DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 211 -dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~v 288 (605)
++++++|||||||||.||+||+.+|++||+||||++||+..+.+++++|++|.++ |.++|+||||++++.++||+|+|
T Consensus 148 ~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~V 227 (539)
T COG1123 148 RDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVV 227 (539)
T ss_pred hccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEE
Confidence 4599999999999999999999999999999999999999999999999999864 99999999999999999999999
Q ss_pred EeCcc-cccc-------ccccchhhHHHHHhhhcCCCCCcccc-cccccccccccCCCcchhhhhhhheeeecCC-----
Q 040300 289 LYGKP-GAYG-------VVTLPFSVREGINIFLAGFVPTENLR-FRDESLTFRVAETPQESAEEIETYARYKYPT----- 354 (605)
Q Consensus 289 l~g~~-~~~g-------~~~~~~~~r~~i~~~l~g~~~~e~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~----- 354 (605)
||.+. ...| ....||+.. .+. ..|...-. ....+..+.. ..++ +...++. ...|..
T Consensus 228 m~~G~iVE~G~~~~i~~~p~hpYT~~-Ll~-----a~p~~~~~~~~~~~~~~~~--~~~~-ll~V~~l-~k~y~~~~~~~ 297 (539)
T COG1123 228 MYKGEIVETGPTEEILSNPQHPYTRG-LLA-----AVPRLGDEKIIRLPRRGPL--RAEP-LLSVRNL-SKRYGSRKGLF 297 (539)
T ss_pred EECCEEEEecCHHHHHhccCCcccHH-HHh-----hCCCccccccccccccccc--ccCc-eeEeeee-eeeeccccccc
Confidence 98542 1222 122333321 111 11111000 0000000000 0111 1112222 334431
Q ss_pred -----ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-------C--cceeEee
Q 040300 355 -----MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-------P--EFNVSYK 418 (605)
Q Consensus 355 -----~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-------~--~~~i~y~ 418 (605)
..++++++||++.+| |++||+|++|||||||.|+|+|+++|++|.+. +.+. . ..++-++
T Consensus 298 ~~~~~~~~Av~~VSf~l~~G-----E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~Qmv 372 (539)
T COG1123 298 VRERGEVKAVDDVSFDLREG-----ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMV 372 (539)
T ss_pred cccccceeeeeeeeeEecCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEE
Confidence 135688999999988 79999999999999999999999999999875 2211 0 1246677
Q ss_pred cCcCC--CCCcCcHHHHHHhhhccC--C---CCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 419 PQKIS--PKFQSTVRHLLHQKIRDS--Y---THPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 419 ~q~~~--~~~~~tv~~~~~~~~~~~--~---~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
+|++. ....+||.+.+....... . .....+.++++..++.. +++++|++|||||||||+|||||+.+|++++
T Consensus 373 FQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli 452 (539)
T COG1123 373 FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLI 452 (539)
T ss_pred EeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEE
Confidence 77753 445679988775432211 1 11235778899999985 8999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+||||++||+..+..+.++|+++.++.|.|.|+||||+.++.++||||+||..+..+ ..|+.+.+++..
T Consensus 453 ~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV--E~G~~~~v~~~p 521 (539)
T COG1123 453 LDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV--EEGPTEKVFENP 521 (539)
T ss_pred ecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE--EeCCHHHHhcCC
Confidence 999999999999999999999999889999999999999999999999999966554 457888887763
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-72 Score=621.59 Aligned_cols=441 Identities=21% Similarity=0.289 Sum_probs=307.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||.+ +|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++..
T Consensus 5 ~l~~~~l~~--------~~~~~-~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~----------- 64 (510)
T PRK09700 5 YISMAGIGK--------SFGPV-HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI----------- 64 (510)
T ss_pred eEEEeeeEE--------EcCCe-EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEE-----------
Confidence 577777655 55432 2345555 35799999999999999999999999999999999842
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh-------h-----cCchHHHHHHHHHHhhcCCchhhcccC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ-------V-----LDQKDERDMKADLCTDLDLNQVIDRNV 214 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~-------~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v 214 (605)
.|.++........ ......+.+|.....+. .+...+.. . +.......++.++++.+||.+.+++++
T Consensus 65 ~g~~i~~~~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 143 (510)
T PRK09700 65 NNINYNKLDHKLA-AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV 143 (510)
T ss_pred CCEECCCCCHHHH-HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch
Confidence 1211111000000 00011122222111110 00011100 0 011233467889999999998899999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccc
Q 040300 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPG 294 (605)
Q Consensus 215 ~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~ 294 (605)
.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++++++|+|||+||||++++..+||++++|+.+..
T Consensus 144 ~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i 223 (510)
T PRK09700 144 ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSS 223 (510)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999987799999999999999999999999975322
Q ss_pred cc-cccccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeec
Q 040300 295 AY-GVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTD 373 (605)
Q Consensus 295 ~~-g~~~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~ 373 (605)
.+ |.... ....+.+..+....... ++.. ..........+.....++. ++.|. ..+++++|++.+|
T Consensus 224 ~~~g~~~~-~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~l~~~~l-~~~~~---~~l~~isl~i~~G---- 289 (510)
T PRK09700 224 VCSGMVSD-VSNDDIVRLMVGRELQN---RFNA--MKENVSNLAHETVFEVRNV-TSRDR---KKVRDISFSVCRG---- 289 (510)
T ss_pred eeecchhh-CCHHHHHHHhcCCCccc---cccc--cccccccCCCCcEEEEeCc-cccCC---CcccceeEEEcCC----
Confidence 21 11110 00111111111100000 0000 0000000000101111222 33342 2588999999888
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcC---CCCCcCcHHHHHHhhhc-
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKI---SPKFQSTVRHLLHQKIR- 439 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~---~~~~~~tv~~~~~~~~~- 439 (605)
|+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+||+. ......|+.+++.....
T Consensus 290 -e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~ 368 (510)
T PRK09700 290 -EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSL 368 (510)
T ss_pred -cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccc
Confidence 78999999999999999999999999999985 22221 12589999973 33345799987643210
Q ss_pred ------c--CC-CC---HHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040300 440 ------D--SY-TH---PQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVA 506 (605)
Q Consensus 440 ------~--~~-~~---~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l 506 (605)
. .. .. ...+.++++.+++. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 448 (510)
T PRK09700 369 KDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEI 448 (510)
T ss_pred ccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHH
Confidence 0 00 11 13457889999997 788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 507 AKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 507 ~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
.++|+++.+ .|.|||+||||++++..+|||+++|+++..
T Consensus 449 ~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i 487 (510)
T PRK09700 449 YKVMRQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRL 487 (510)
T ss_pred HHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEE
Confidence 999999865 589999999999999999999999986543
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-71 Score=620.22 Aligned_cols=449 Identities=20% Similarity=0.250 Sum_probs=314.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC--CCceeeCCCChhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP--NLGRFNNPPDWQEILT 145 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p--~~G~i~~~~~~~~~~~ 145 (605)
+|++.||. ++|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++| +.|++..
T Consensus 5 ~l~~~nl~--------~~~~~~-~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~--------- 66 (506)
T PRK13549 5 LLEMKNIT--------KTFGGV-KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF--------- 66 (506)
T ss_pred eEEEeeeE--------EEeCCe-EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE---------
Confidence 57776654 466532 3455555 3579999999999999999999999999996 7998742
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh--------hcCchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ--------VLDQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~--------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|.++......... ....++.+|.....+. .+...+.. ........+++.++++.+++.+.+++++.+
T Consensus 67 --~g~~~~~~~~~~~~-~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (506)
T PRK13549 67 --EGEELQASNIRDTE-RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGN 143 (506)
T ss_pred --CCEECCCCCHHHHH-HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhh
Confidence 22211100000000 0001222222111111 01111100 011122345788999999999889999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccc-c
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPG-A 295 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~-~ 295 (605)
|||||||||+||+||+.+|++||||||||+||+..+.++.++|+++.++|+|||+||||++++..+||++++|+.+.. .
T Consensus 144 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 144 LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223 (506)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999999999999999999999999999999987799999999999999999999999975322 1
Q ss_pred ccccccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCC--ceeeeeeEEEEEeeceeec
Q 040300 296 YGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPT--MVKTQGNFKLKVVEGEFTD 373 (605)
Q Consensus 296 ~g~~~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~~~~l~~~~l~v~~G~~~~ 373 (605)
.|.... ......+..+...... .. +.. ........ ....++. ++.|+. ....+++++|++.+|
T Consensus 224 ~~~~~~-~~~~~~~~~~~~~~~~-~~--~~~-----~~~~~~~~-~l~~~~l-~~~~~~~~~~~vl~~vsl~i~~G---- 288 (506)
T PRK13549 224 TRPAAG-MTEDDIITMMVGRELT-AL--YPR-----EPHTIGEV-ILEVRNL-TAWDPVNPHIKRVDDVSFSLRRG---- 288 (506)
T ss_pred eccccc-CCHHHHHHHhhCcCcc-cc--ccc-----cccCCCCc-eEEEecC-ccccccccccccccceeeEEcCC----
Confidence 121111 1111111111110000 00 000 00000111 1122333 666741 234688999999888
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCC-CCeeeee--ccccC--------cceeEeecCcCC---CCCcCcHHHHHHhhhc
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLK-PDSVEDS--DVEIP--------EFNVSYKPQKIS---PKFQSTVRHLLHQKIR 439 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~-p~~G~i~--~~~~~--------~~~i~y~~q~~~---~~~~~tv~~~~~~~~~ 439 (605)
|+++|+||||||||||+|+|+|+++ |++|++. +..+. ...++|++|+.. .....|+.+++.....
T Consensus 289 -e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~ 367 (506)
T PRK13549 289 -EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAAL 367 (506)
T ss_pred -cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhh
Confidence 7899999999999999999999999 5999885 22221 134899999852 3345799987743211
Q ss_pred -c--C---CC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040300 440 -D--S---YT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509 (605)
Q Consensus 440 -~--~---~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~ 509 (605)
. . .. ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 447 (506)
T PRK13549 368 DRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKL 447 (506)
T ss_pred hhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHH
Confidence 0 0 01 123567899999996 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 510 IKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 510 l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
|+++.+ .|.|||+||||++++..+|||+++|+++.. ...++++++
T Consensus 448 l~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i--~~~~~~~~~ 492 (506)
T PRK13549 448 INQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKL--KGDLINHNL 492 (506)
T ss_pred HHHHHH-CCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEEeccccC
Confidence 999865 599999999999999999999999986543 244555554
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-71 Score=619.66 Aligned_cols=449 Identities=20% Similarity=0.250 Sum_probs=311.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.. ..|++++ .+.+|+++||+|+||||||||+|+|+|+++|+.|++..
T Consensus 11 ~l~~~~l~--------~~~~~~-~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~----------- 70 (510)
T PRK15439 11 LLCARSIS--------KQYSGV-EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI----------- 70 (510)
T ss_pred eEEEEeEE--------EEeCCc-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------
Confidence 57776654 466543 2455555 35799999999999999999999999999999999842
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc-----CchHHHHHHHHHHhhcCCchhhcccCCCCChHHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL-----DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGEL 222 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l-----~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~ 222 (605)
.|..+........ .....++.+|.....+. .++.+.+ .....++++.++++.++|.+.+++++.+||||||
T Consensus 71 ~g~~~~~~~~~~~-~~~~i~~v~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 146 (510)
T PRK15439 71 GGNPCARLTPAKA-HQLGIYLVPQEPLLFPN---LSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADR 146 (510)
T ss_pred CCEECCCCCHHHH-HhCCEEEEeccCccCCC---CcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHH
Confidence 2222211000000 00111222332221111 1222221 1123356788999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccc-ccccc
Q 040300 223 QRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAY-GVVTL 301 (605)
Q Consensus 223 QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~-g~~~~ 301 (605)
|||+||+||+.+|++|||||||++||+..+.++.++|++++++|+|||+||||++++..+||+|++|+.+...+ |....
T Consensus 147 qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 147 QIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHH
Confidence 99999999999999999999999999999999999999998779999999999999999999999996432211 11100
Q ss_pred chhhHHHHHhhhcCCCCCcccccc-cccccccccCC---CcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEE
Q 040300 302 PFSVREGINIFLAGFVPTENLRFR-DESLTFRVAET---PQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQII 377 (605)
Q Consensus 302 ~~~~r~~i~~~l~g~~~~e~~~~r-~~~~~~~~~~~---~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii 377 (605)
....+..+.+.... ....++.. .....+..... ......... .++. ..+++++|++.+| |++
T Consensus 227 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~l~~----~~l~~isl~i~~G-----e~~ 292 (510)
T PRK15439 227 -LSTDDIIQAITPAA-REKSLSASQKLWLELPGNRRQQAAGAPVLTVE---DLTG----EGFRNISLEVRAG-----EIL 292 (510)
T ss_pred -cCHHHHHHHHhCcc-ccccccccccccccccccccccCCCCceEEEe---CCCC----CCccceeEEEcCC-----cEE
Confidence 00111122111100 00000000 00000100000 000010011 1111 1378888888887 789
Q ss_pred EEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcCC---CCCcCcHHHHHHhh----hcc
Q 040300 378 VMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKIS---PKFQSTVRHLLHQK----IRD 440 (605)
Q Consensus 378 ~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~~---~~~~~tv~~~~~~~----~~~ 440 (605)
+|+||||||||||+|+|+|+++|++|++. +..+. ...++|+||+.. .....|+.+++... ...
T Consensus 293 ~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~ 372 (510)
T PRK15439 293 GLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGF 372 (510)
T ss_pred EEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhcc
Confidence 99999999999999999999999999885 22221 135899999742 33446887775321 000
Q ss_pred CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 040300 441 SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 441 ~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 516 (605)
... ....+.++++.+++. ...++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++..
T Consensus 373 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~- 451 (510)
T PRK15439 373 WIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA- 451 (510)
T ss_pred ccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-
Confidence 001 123467889999997 788999999999999999999999999999999999999999999999999999865
Q ss_pred CCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 517 AKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 517 ~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
.|.|||+||||++++..+|||+++++++... ..++++++.
T Consensus 452 ~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~--~~~~~~~~~ 491 (510)
T PRK15439 452 QNVAVLFISSDLEEIEQMADRVLVMHQGEIS--GALTGAAIN 491 (510)
T ss_pred CCCEEEEECCCHHHHHHhCCEEEEEECCEEE--EEEccccCC
Confidence 5899999999999999999999999865432 446666654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-71 Score=614.70 Aligned_cols=443 Identities=21% Similarity=0.255 Sum_probs=308.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||.+ +|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++..
T Consensus 4 ~i~~~~l~~--------~~~~~-~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~----------- 63 (501)
T PRK10762 4 LLQLKGIDK--------AFPGV-KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY----------- 63 (501)
T ss_pred eEEEeeeEE--------EeCCe-EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------
Confidence 577777654 55432 2345555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh---------hcCchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ---------VLDQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~---------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
.|.++......... .....+.+|.....+. .+...+.. .+.....++++.++++.+||.+.+++++.+|
T Consensus 64 ~g~~~~~~~~~~~~-~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 142 (501)
T PRK10762 64 LGKEVTFNGPKSSQ-EAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGEL 142 (501)
T ss_pred CCEECCCCCHHHHH-hCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhC
Confidence 12111100000000 0001112222111111 00011100 0111223457889999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccc-cc
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPG-AY 296 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~-~~ 296 (605)
||||||||+||+||+.+|++|||||||++||+.++.++.++|+++.+.|.|||+||||++++..+||+|++|+.+.. ..
T Consensus 143 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 143 SIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999999987789999999999999999999999964321 11
Q ss_pred cccccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeE
Q 040300 297 GVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQI 376 (605)
Q Consensus 297 g~~~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~gei 376 (605)
+.. ...........+...... .....+.. ....+ ....++. + . ..+++++|++.+| |+
T Consensus 223 ~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~-~l~~~~l-~--~----~~l~~vsl~i~~G-----e~ 280 (501)
T PRK10762 223 REV-ADLTEDSLIEMMVGRKLE-------DQYPRLDK-APGEV-RLKVDNL-S--G----PGVNDVSFTLRKG-----EI 280 (501)
T ss_pred cCc-CcCCHHHHHHHhcCCCcc-------cccccccc-CCCCc-EEEEeCc-c--c----CCcccceEEEcCC-----cE
Confidence 111 001111111111110000 00000000 00001 1111111 1 1 2478899998888 78
Q ss_pred EEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcC---CCCCcCcHHHHHHhhhc---c
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKI---SPKFQSTVRHLLHQKIR---D 440 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~---~~~~~~tv~~~~~~~~~---~ 440 (605)
++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+||+. ......|+.+++..... .
T Consensus 281 ~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~ 360 (501)
T PRK10762 281 LGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFS 360 (501)
T ss_pred EEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhc
Confidence 999999999999999999999999999975 22221 13599999985 23455799987743110 0
Q ss_pred C----CC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHH
Q 040300 441 S----YT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512 (605)
Q Consensus 441 ~----~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 512 (605)
. .. ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++
T Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 440 (501)
T PRK10762 361 RAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440 (501)
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence 0 11 123467899999995 678999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 513 FILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 513 l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
+.. .|.|||+||||++++..+|||+++|+++.. ...+++.++
T Consensus 441 ~~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i--~~~~~~~~~ 482 (501)
T PRK10762 441 FKA-EGLSIILVSSEMPEVLGMSDRILVMHEGRI--SGEFTREQA 482 (501)
T ss_pred HHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEE--EEEeccccC
Confidence 865 489999999999999999999999986543 234555554
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-71 Score=628.35 Aligned_cols=468 Identities=19% Similarity=0.225 Sum_probs=320.1
Q ss_pred eEEEecCCcccCCCceEEeCC---CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCC-Chhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGP---NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP-DWQEI 143 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~---~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~-~~~~~ 143 (605)
+|++.||.+ +|+. ....+.+++ .+.+||++||+|+||||||||+|+|+|+++|+.|++.... ...
T Consensus 12 ~l~v~~l~~--------~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~-- 81 (623)
T PRK10261 12 VLAVENLNI--------AFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLR-- 81 (623)
T ss_pred eEEEeceEE--------EecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEec--
Confidence 577777654 5532 112455555 3579999999999999999999999999999999875211 000
Q ss_pred hhhhccch---hhhhHHHHHHHH--HHHhhccccc--ccchh-hhhchhhh------hcCchHHHHHHHHHHhhcCCc--
Q 040300 144 LTYFRGSE---LQNYFTRILEDN--LKAIIKPQYV--DHIPK-AVQGNVGQ------VLDQKDERDMKADLCTDLDLN-- 207 (605)
Q Consensus 144 ~~~~~g~~---l~~~~~~~~~~~--~~~~~~~q~~--~~~~~-~~~~~v~~------~l~~~~~~~~~~~~l~~l~L~-- 207 (605)
-.|.+ +.+......... ...++.+|.. ...|. .+...+.. .+.....++++.++++.+||.
T Consensus 82 ---~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 82 ---RRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ---cccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh
Confidence 00000 000000000000 0122233321 01111 11111111 012233456788999999995
Q ss_pred -hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCE
Q 040300 208 -QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 208 -~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~ 285 (605)
+.+++++.+|||||+|||+||+||+.+|++|||||||++||+..+.++.++|+++.++ |+|||+||||++++..+||+
T Consensus 159 ~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adr 238 (623)
T PRK10261 159 QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADR 238 (623)
T ss_pred hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 4689999999999999999999999999999999999999999999999999999865 89999999999999999999
Q ss_pred EEEEeCcccc-cccc----ccchhhHHHHHhhhcCCCCCc-cc-----ccccccc---------c--ccccCCCcchhhh
Q 040300 286 ICCLYGKPGA-YGVV----TLPFSVREGINIFLAGFVPTE-NL-----RFRDESL---------T--FRVAETPQESAEE 343 (605)
Q Consensus 286 i~vl~g~~~~-~g~~----~~~~~~r~~i~~~l~g~~~~e-~~-----~~r~~~~---------~--~~~~~~~~~~~~~ 343 (605)
|++|+.+... .|.. ..|... ....++. ..|.. .+ ..+.... . +............
T Consensus 239 i~vl~~G~i~~~g~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 315 (623)
T PRK10261 239 VLVMYQGEAVETGSVEQIFHAPQHP--YTRALLA-AVPQLGAMKGLDYPRRFPLISLEHPAKQEPPIEQDTVVDGEPILQ 315 (623)
T ss_pred EEEeeCCeecccCCHHHhhcCCCCh--hhhhhhh-ccCcccccccccCCccccccccccccccCcccccccccCCCceEE
Confidence 9999743221 1110 011000 0001110 00100 00 0000000 0 0000000010112
Q ss_pred hhhheeeecCC----------ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC
Q 040300 344 IETYARYKYPT----------MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP 411 (605)
Q Consensus 344 ~~~~~~~~y~~----------~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~ 411 (605)
.++. ++.|+. ....+++++|++.+| |+++|+|+||||||||+|+|+|+++|++|++. +..+.
T Consensus 316 ~~~l-~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~G-----e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 316 VRNL-VTRFPLRSGLLNRVTREVHAVEKVSFDLWPG-----ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389 (623)
T ss_pred Eeee-EEEEcCCCccccccCCceEEEeeeEeEEcCC-----CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 2333 677752 124688999999888 78999999999999999999999999999985 22211
Q ss_pred ----------cceeEeecCcC--CCCCcCcHHHHHHhhhcc-CC-C---CHHHHHHHHhhcCCc-hhhccCcCcCChhHH
Q 040300 412 ----------EFNVSYKPQKI--SPKFQSTVRHLLHQKIRD-SY-T---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGEL 473 (605)
Q Consensus 412 ----------~~~i~y~~q~~--~~~~~~tv~~~~~~~~~~-~~-~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~ 473 (605)
...|+|++|+. ......||.+++...... .. . ....+.++++.++|. ...++++.+||||||
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr 469 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR 469 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 23599999986 244457998877532211 11 1 124567899999996 678999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCC
Q 040300 474 QRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANA 553 (605)
Q Consensus 474 QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~ 553 (605)
|||+|||||+.+|+||||||||++||+.++..++++|+++.++.|.|||+||||++++.++||||++|+.+.. ...++
T Consensus 470 QRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i--v~~g~ 547 (623)
T PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI--VEIGP 547 (623)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEecC
Confidence 9999999999999999999999999999999999999998766689999999999999999999999986543 35678
Q ss_pred hhhhhcc
Q 040300 554 PQSLLTG 560 (605)
Q Consensus 554 p~~~~~~ 560 (605)
+++++..
T Consensus 548 ~~~i~~~ 554 (623)
T PRK10261 548 RRAVFEN 554 (623)
T ss_pred HHHHhcC
Confidence 8888753
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-71 Score=617.48 Aligned_cols=453 Identities=23% Similarity=0.314 Sum_probs=316.2
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCC--CCCCceeeCCC-Chhhhhhhh----------
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKL--KPNLGRFNNPP-DWQEILTYF---------- 147 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l--~p~~G~i~~~~-~~~~~~~~~---------- 147 (605)
+++++|+.. ..+.+++ .+.+|+++||+|+||||||||+|+|+|++ +|+.|++.... .+.. ..+.
T Consensus 5 ~l~~~~~~~-~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~-~~~~~~~~~~g~~~ 82 (520)
T TIGR03269 5 NLTKKFDGK-EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK-CGYVERPSKVGEPC 82 (520)
T ss_pred EEEEEECCe-EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc-cccccccccccccc
Confidence 456677643 3455666 45899999999999999999999999997 79999975310 0000 0000
Q ss_pred --ccchhh----hh---HHHHHHH-HHHHhhcccc-cccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhh
Q 040300 148 --RGSELQ----NY---FTRILED-NLKAIIKPQY-VDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVI 210 (605)
Q Consensus 148 --~g~~l~----~~---~~~~~~~-~~~~~~~~q~-~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~ 210 (605)
.|..+. +. ....... .....+.+|. ....+. .+...+.. . +.....+.++.++++.+||++.+
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 162 (520)
T TIGR03269 83 PVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRI 162 (520)
T ss_pred ccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh
Confidence 011100 00 0000000 0112233332 111111 11111110 0 11223356788999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|+++.+ .|+|||+||||++++..+||+|++|
T Consensus 163 ~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l 242 (520)
T TIGR03269 163 THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWL 242 (520)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999999999976 4899999999999999999999999
Q ss_pred eCccccccccccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCC----ceeeeeeEEEE
Q 040300 290 YGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPT----MVKTQGNFKLK 365 (605)
Q Consensus 290 ~g~~~~~g~~~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~----~~~~l~~~~l~ 365 (605)
+.+...+. ....+....+.... + .+ .. .. .. ..... ....++. ++.|++ ....+++++|+
T Consensus 243 ~~G~i~~~-----g~~~~~~~~~~~~~-~--~~--~~-~~--~~-~~~~~-~l~~~~l-~~~~~~~~~~~~~il~~is~~ 306 (520)
T TIGR03269 243 ENGEIKEE-----GTPDEVVAVFMEGV-S--EV--EK-EC--EV-EVGEP-IIKVRNV-SKRYISVDRGVVKAVDNVSLE 306 (520)
T ss_pred eCCEEeee-----cCHHHHHHHHHhhc-h--hh--cc-cc--cc-CCCCc-eEEEecc-EEEeccCCCCCceEEeeEEEE
Confidence 64321110 11111111111110 0 00 00 00 00 00111 1222334 777742 13468999999
Q ss_pred EeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec---cc---cC----------cceeEeecCcCCCCCcCc
Q 040300 366 VVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD---VE---IP----------EFNVSYKPQKISPKFQST 429 (605)
Q Consensus 366 v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~---~~---~~----------~~~i~y~~q~~~~~~~~t 429 (605)
+.+| |+++|+||||||||||+|+|+|+++|++|++.. .. .. ..+++|+||+.......|
T Consensus 307 i~~G-----e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 381 (520)
T TIGR03269 307 VKEG-----EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRT 381 (520)
T ss_pred EcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCc
Confidence 9888 789999999999999999999999999999752 10 00 135899999876555679
Q ss_pred HHHHHHhhhccCCC---CHHHHHHHHhhcCCch-----hhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040300 430 VRHLLHQKIRDSYT---HPQFVSDVMKPLLIEQ-----LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501 (605)
Q Consensus 430 v~~~~~~~~~~~~~---~~~~~~~~l~~l~l~~-----~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~ 501 (605)
|.+++......... ....+.++++.+++.. ++++++.+|||||||||+|||||+.+|++|||||||++||+.
T Consensus 382 v~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~ 461 (520)
T TIGR03269 382 VLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPI 461 (520)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 99987532111111 1234677899999974 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++..++++|+++.++.|.|||+||||++++..+|||+++|+++.. ...++|++++.
T Consensus 462 ~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 517 (520)
T TIGR03269 462 TKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI--VKIGDPEEIVE 517 (520)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHh
Confidence 999999999998766689999999999999999999999986543 34467776644
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-71 Score=617.87 Aligned_cols=452 Identities=20% Similarity=0.261 Sum_probs=315.0
Q ss_pred eEEEecCCcccCCCceEEeCC---CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceeeCCCC
Q 040300 69 AIQIINLPKDLDKDTTHRYGP---NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP-----NLGRFNNPPD 139 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~---~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-----~~G~i~~~~~ 139 (605)
+|++.||. ++|+. ....+++++ .+.+||++||+|+||||||||+|+|+|+++| +.|++..
T Consensus 5 ~l~~~~l~--------~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~--- 73 (529)
T PRK15134 5 LLAIENLS--------VAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRF--- 73 (529)
T ss_pred eEEEeceE--------EEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEE---
Confidence 46666654 45542 112455555 3579999999999999999999999999987 6898742
Q ss_pred hhhhhhhhccchhhhhHHHHHHH--HHHHhhcccccc--cchh-hhhchhhh------hcCchHHHHHHHHHHhhcCCch
Q 040300 140 WQEILTYFRGSELQNYFTRILED--NLKAIIKPQYVD--HIPK-AVQGNVGQ------VLDQKDERDMKADLCTDLDLNQ 208 (605)
Q Consensus 140 ~~~~~~~~~g~~l~~~~~~~~~~--~~~~~~~~q~~~--~~~~-~~~~~v~~------~l~~~~~~~~~~~~l~~l~L~~ 208 (605)
.|..+..+....... .....+.+|... ..+. .+...+.. -+.......++.++++.+||.+
T Consensus 74 --------~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 145 (529)
T PRK15134 74 --------HGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQ 145 (529)
T ss_pred --------CCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC
Confidence 121111100000000 001112222210 0000 00001110 0112234567889999999975
Q ss_pred ---hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcC
Q 040300 209 ---VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSD 284 (605)
Q Consensus 209 ---~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D 284 (605)
.+++++.+|||||||||+||+||+.+|++|||||||++||+..+.++.++|+++.++ |+|||+||||++++..+||
T Consensus 146 ~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 225 (529)
T PRK15134 146 AAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLAD 225 (529)
T ss_pred hHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcC
Confidence 469999999999999999999999999999999999999999999999999999765 8999999999999999999
Q ss_pred EEEEEeCccc-ccccc----ccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCC-----
Q 040300 285 FICCLYGKPG-AYGVV----TLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPT----- 354 (605)
Q Consensus 285 ~i~vl~g~~~-~~g~~----~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~----- 354 (605)
+|++|+.+.. .+|.. ..+. ......++... +. .+... ......+ ....++. ++.|+.
T Consensus 226 ri~~l~~G~i~~~g~~~~~~~~~~--~~~~~~~~~~~-~~----~~~~~----~~~~~~~-~l~~~~l-~~~~~~~~~~~ 292 (529)
T PRK15134 226 RVAVMQNGRCVEQNRAATLFSAPT--HPYTQKLLNSE-PS----GDPVP----LPEPASP-LLDVEQL-QVAFPIRKGIL 292 (529)
T ss_pred EEEEEECCEEEEeCCHHHHhhCCC--CHHHHHHHHhC-cc----ccccc----cCCCCCC-cccccCc-EEEeecCcccc
Confidence 9999975321 12210 0000 00111111100 00 00000 0000111 2223344 777752
Q ss_pred -----ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C-------cceeEe
Q 040300 355 -----MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P-------EFNVSY 417 (605)
Q Consensus 355 -----~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~-------~~~i~y 417 (605)
....+++++|++.+| |+++|+||||||||||+|+|+|++ |++|++. +..+ + ...++|
T Consensus 293 ~~~~~~~~il~~isl~i~~G-----e~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 366 (529)
T PRK15134 293 KRTVDHNVVVKNISFTLRPG-----ETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQV 366 (529)
T ss_pred ccccccceeeecceeEEcCC-----CEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEE
Confidence 134688999999888 789999999999999999999998 5889875 2211 1 235899
Q ss_pred ecCcCC--CCCcCcHHHHHHhhhc--c-CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 418 KPQKIS--PKFQSTVRHLLHQKIR--D-SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 418 ~~q~~~--~~~~~tv~~~~~~~~~--~-~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
++|+.. .....||.+++..... . ... ....+.++++.+++. ...++++.+|||||||||+|||||+.+|++
T Consensus 367 v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 446 (529)
T PRK15134 367 VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSL 446 (529)
T ss_pred EEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCE
Confidence 999852 3345799988754211 1 011 123567899999997 578999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||||||++||+.++..++++|+++.++.|.|||+||||++++..+|||+++|+++.. ...++++++++.
T Consensus 447 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 516 (529)
T PRK15134 447 IILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEV--VEQGDCERVFAA 516 (529)
T ss_pred EEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEE--EEEcCHHHHhcC
Confidence 9999999999999999999999998765689999999999999999999999986543 355777777653
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=610.67 Aligned_cols=445 Identities=21% Similarity=0.245 Sum_probs=309.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 4 ~l~~~~l~--------~~~~~~-~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~----------- 63 (501)
T PRK11288 4 YLSFDGIG--------KTFPGV-KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILI----------- 63 (501)
T ss_pred eEEEeeeE--------EEECCE-EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE-----------
Confidence 57777654 456532 2455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHH-HHHHHHHHHhhcccccccchh-hhhchhhh--------hcCchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 148 RGSELQNYFT-RILEDNLKAIIKPQYVDHIPK-AVQGNVGQ--------VLDQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 148 ~g~~l~~~~~-~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~--------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
.|..+..... ... .....+.+|.....+. .+..++.. ........+++.++++.++|.+..++++.+|
T Consensus 64 ~g~~i~~~~~~~~~--~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (501)
T PRK11288 64 DGQEMRFASTTAAL--AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYL 141 (501)
T ss_pred CCEECCCCCHHHHH--hCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhC
Confidence 1111100000 000 0001112222111111 01111100 0112233567889999999998889999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccc-
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAY- 296 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~- 296 (605)
|||||||++||+||+.+|++|||||||++||+.++.++.++|+++.++|.|||+||||++++..+||+|++|+.+....
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 142 SIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999999999998779999999999999999999999997532211
Q ss_pred cccccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeE
Q 040300 297 GVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQI 376 (605)
Q Consensus 297 g~~~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~gei 376 (605)
+......+..+....+..... +. ............ ....+ .+++. ..+++++|++.+| |+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~-~l~~~---~~~~~---~~l~~isl~i~~G-----e~ 281 (501)
T PRK11288 222 FDDMAQVDRDQLVQAMVGREI--GD------IYGYRPRPLGEV-RLRLD---GLKGP---GLREPISFSVRAG-----EI 281 (501)
T ss_pred cCccccCCHHHHHHHhcCCCc--cc------cccccccCCCCc-EEEEe---ccccC---CcccceeEEEeCC-----cE
Confidence 100000011111111111000 00 000000000000 11111 12222 2578999999888 78
Q ss_pred EEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcCC---CCCcCcHHHHHHhhhcc---
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKIS---PKFQSTVRHLLHQKIRD--- 440 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~~---~~~~~tv~~~~~~~~~~--- 440 (605)
++|+||||||||||+|+|+|+++|++|++. +.... ...++|+||+.. .....|+.+++......
T Consensus 282 ~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~ 361 (501)
T PRK11288 282 VGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHL 361 (501)
T ss_pred EEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhc
Confidence 999999999999999999999999999885 22211 135899999852 44557998876432110
Q ss_pred --C--CCC---HHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHH
Q 040300 441 --S--YTH---PQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512 (605)
Q Consensus 441 --~--~~~---~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 512 (605)
. ... ...+.++++.+++. +..++++.+|||||||||+||+||+.+|+||||||||+|||+.++..++++|++
T Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 441 (501)
T PRK11288 362 RAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYE 441 (501)
T ss_pred ccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence 0 011 23467899999994 788999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 513 FILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 513 l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
+.+ .|.|||+||||++++..+|||+++|+++.. ...+++++..
T Consensus 442 l~~-~g~tviivsHd~~~~~~~~d~i~~l~~g~i--~~~~~~~~~~ 484 (501)
T PRK11288 442 LAA-QGVAVLFVSSDLPEVLGVADRIVVMREGRI--AGELAREQAT 484 (501)
T ss_pred HHh-CCCEEEEECCCHHHHHhhCCEEEEEECCEE--EEEEccccCC
Confidence 864 589999999999999999999999986543 2445555433
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-70 Score=608.05 Aligned_cols=434 Identities=22% Similarity=0.256 Sum_probs=301.8
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC--CCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP--NLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p--~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++| +.|++.. .|..+.......
T Consensus 7 l~~~~~~~-~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~-----------~g~~~~~~~~~~ 74 (500)
T TIGR02633 7 IVKTFGGV-KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYW-----------SGSPLKASNIRD 74 (500)
T ss_pred EEEEeCCe-EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE-----------CCEECCCCCHHH
Confidence 44566542 2455555 3579999999999999999999999999987 7898752 121111000000
Q ss_pred HHHHHHHhhcccccccchh-hhhchhhh---------hcCchHHHHHHHHHHhhcCCchhh-cccCCCCChHHHHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPK-AVQGNVGQ---------VLDQKDERDMKADLCTDLDLNQVI-DRNVGDLSGGELQRFAIA 228 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~-~~~~~v~~---------~l~~~~~~~~~~~~l~~l~L~~~~-dr~v~~LSGGe~QRvaIA 228 (605)
. ......+.+|.....+. .+...+.. .........++.++++.++|.+.. ++++.+|||||||||+||
T Consensus 75 ~-~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA 153 (500)
T TIGR02633 75 T-ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIA 153 (500)
T ss_pred H-HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHH
Confidence 0 00011122222111111 01111100 011123345788899999998754 688999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcc-ccccccccchhhHH
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKP-GAYGVVTLPFSVRE 307 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~-~~~g~~~~~~~~r~ 307 (605)
+||+.+|++|||||||++||+..+.++.++|+++.++|.|||+||||++++..+||+|++|+.+. ..++... ......
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~-~~~~~~ 232 (500)
T TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMS-TMSEDD 232 (500)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcc-cCCHHH
Confidence 99999999999999999999999999999999998779999999999999999999999996432 1222111 111111
Q ss_pred HHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCC--ceeeeeeEEEEEeeceeecCeEEEEEecCCC
Q 040300 308 GINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPT--MVKTQGNFKLKVVEGEFTDSQIIVMLGENGT 385 (605)
Q Consensus 308 ~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~~~~l~~~~l~v~~G~~~~geii~i~G~NGs 385 (605)
.+..+.....+. .+.... ...... ....++. ++.|+. ....+++++|++.+| |+++|+|||||
T Consensus 233 ~~~~~~~~~~~~---~~~~~~-----~~~~~~-~l~~~~l-~~~~~~~~~~~~l~~is~~i~~G-----e~~~l~G~NGs 297 (500)
T TIGR02633 233 IITMMVGREITS---LYPHEP-----HEIGDV-ILEARNL-TCWDVINPHRKRVDDVSFSLRRG-----EILGVAGLVGA 297 (500)
T ss_pred HHHHHhCccccc---cccccc-----cCCCCc-eEEEeCC-cccccccccccccccceeEEeCC-----cEEEEeCCCCC
Confidence 111111100000 000000 000111 1122233 556621 124688999999888 78999999999
Q ss_pred CHHHHHHHHHcCCCC-Ceeeee--ccccC--------cceeEeecCcCC---CCCcCcHHHHHHhhhc----c--CCC--
Q 040300 386 GKTTFIRMLAGLLKP-DSVEDS--DVEIP--------EFNVSYKPQKIS---PKFQSTVRHLLHQKIR----D--SYT-- 443 (605)
Q Consensus 386 GKSTLlk~L~Gl~~p-~~G~i~--~~~~~--------~~~i~y~~q~~~---~~~~~tv~~~~~~~~~----~--~~~-- 443 (605)
|||||+|+|+|+++| ++|++. +..+. ..+++|++|+.. .....|+.+++..... . ...
T Consensus 298 GKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~ 377 (500)
T TIGR02633 298 GRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAA 377 (500)
T ss_pred CHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHH
Confidence 999999999999995 899885 22221 235899999852 3445789887643211 0 011
Q ss_pred -CHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q 040300 444 -HPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521 (605)
Q Consensus 444 -~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 521 (605)
....+.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|.||
T Consensus 378 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tv 456 (500)
T TIGR02633 378 AELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAI 456 (500)
T ss_pred HHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEE
Confidence 1234678999999974 68999999999999999999999999999999999999999999999999999865 58999
Q ss_pred EEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 522 FVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 522 ivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
|+||||++++..+|||+++|+++..
T Consensus 457 iivsHd~~~~~~~~d~v~~l~~G~i 481 (500)
T TIGR02633 457 IVVSSELAEVLGLSDRVLVIGEGKL 481 (500)
T ss_pred EEECCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999986543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-70 Score=607.65 Aligned_cols=446 Identities=18% Similarity=0.223 Sum_probs=305.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+ +++|+.. ..|++++ .+.+|+++||+|+||||||||+|+|+|+++|+.|++...
T Consensus 3 ~l~~~~l--------~~~~~~~-~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~---------- 63 (490)
T PRK10938 3 SLQISQG--------TFRLSDT-KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQ---------- 63 (490)
T ss_pred eEEEEeE--------EEEcCCe-eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEEC----------
Confidence 4666664 5566543 2456666 458999999999999999999999999999999998521
Q ss_pred ccchhhhhHHHHHHHHHHHhhccccccc--c---hhhhhchhhhhcC-chHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDH--I---PKAVQGNVGQVLD-QKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~--~---~~~~~~~v~~~l~-~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
|..+.......... ...+.+|.... . +....-++.+.+. .....+++.++++.+||.+.+++++.+|||||
T Consensus 64 -~~~~~~~~~~~~~~--~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 140 (490)
T PRK10938 64 -FSHITRLSFEQLQK--LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGE 140 (490)
T ss_pred -CcccccCCHHHHHH--HhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHH
Confidence 11110000000000 01122221100 0 0000112333221 12235678899999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccc-cccccc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPG-AYGVVT 300 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~-~~g~~~ 300 (605)
||||+||+||+.+|++|||||||++||+.++.++.++|+++.++|.|||+||||++++..+||+|++|+.+.. ..|...
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 220 (490)
T PRK10938 141 TRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE 220 (490)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999987789999999999999999999999974322 112100
Q ss_pred cchhhHHHHHhhhc-CCCCCccccccccc-ccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEE
Q 040300 301 LPFSVREGINIFLA-GFVPTENLRFRDES-LTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIV 378 (605)
Q Consensus 301 ~~~~~r~~i~~~l~-g~~~~e~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~ 378 (605)
.... ...+..+.. ..+........... ...... ...+ ....++. ++.|++. ..+++++|++.+| |+++
T Consensus 221 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~l~~~~l-~~~~~~~-~il~~vsl~i~~G-----e~~~ 290 (490)
T PRK10938 221 EILQ-QALVAQLAHSEQLEGVQLPEPDEPSARHALP-ANEP-RIVLNNG-VVSYNDR-PILHNLSWQVNPG-----EHWQ 290 (490)
T ss_pred HHhc-chhhhhhhhhhccCccccCcccccccccccC-CCCc-eEEEece-EEEECCe-eEEeeceEEEcCC-----CEEE
Confidence 0000 000110000 00000000000000 000000 0111 1122333 6777653 3688999998888 7899
Q ss_pred EEecCCCCHHHHHHHHHcCCCC-Ceeeee--cccc----C----cceeEeecCcCCCCC--cCcHHHHHHhhhc------
Q 040300 379 MLGENGTGKTTFIRMLAGLLKP-DSVEDS--DVEI----P----EFNVSYKPQKISPKF--QSTVRHLLHQKIR------ 439 (605)
Q Consensus 379 i~G~NGsGKSTLlk~L~Gl~~p-~~G~i~--~~~~----~----~~~i~y~~q~~~~~~--~~tv~~~~~~~~~------ 439 (605)
|+||||||||||+|+|+|+.+| ++|++. +... . ...++|++|+....+ ..++.+++.....
T Consensus 291 i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (490)
T PRK10938 291 IVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIY 370 (490)
T ss_pred EECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccc
Confidence 9999999999999999998875 688875 2111 0 235999999754322 2466665432110
Q ss_pred cCCC--CHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 040300 440 DSYT--HPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 440 ~~~~--~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 516 (605)
.... ....+.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.++
T Consensus 371 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~ 450 (490)
T PRK10938 371 QAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE 450 (490)
T ss_pred cCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc
Confidence 0011 1235678999999997 899999999999999999999999999999999999999999999999999998765
Q ss_pred CCcEEEEEecCHHHHHh-hcCEEEEEeCCcc
Q 040300 517 AKKTAFVVEHDFIMATY-LADRVIVYEGQPS 546 (605)
Q Consensus 517 ~g~tiivvsHD~~~~~~-~adrviv~~g~~~ 546 (605)
.+.|||+||||++++.. +|||+++|+++..
T Consensus 451 ~~~tviivsHd~~~~~~~~~d~v~~l~~G~i 481 (490)
T PRK10938 451 GETQLLFVSHHAEDAPACITHRLEFVPDGDI 481 (490)
T ss_pred CCcEEEEEecchhhhhhhhheeEEEecCCce
Confidence 34579999999999987 6999999986543
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-70 Score=603.01 Aligned_cols=433 Identities=18% Similarity=0.217 Sum_probs=301.1
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++++|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++.. .|..+.......
T Consensus 2 ~nl~~~~~~~-~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~ 69 (491)
T PRK10982 2 SNISKSFPGV-KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILF-----------QGKEIDFKSSKE 69 (491)
T ss_pred CceEEEeCCE-EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE-----------CCEECCCCCHHH
Confidence 4677888753 3566666 46899999999999999999999999999999999852 121111000000
Q ss_pred HHHHHHHhhcccccccchh-hhhchhh-------hh-cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPK-AVQGNVG-------QV-LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~-~~~~~v~-------~~-l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
. ......+.+|.....+. .+..++. .. .......+++.++++.+++.+.+++++.+|||||||||+||+|
T Consensus 70 ~-~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~a 148 (491)
T PRK10982 70 A-LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKA 148 (491)
T ss_pred H-HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 0 00001122222111111 0111110 00 1112234578889999999988999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccc-cccccchhhHHHH
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAY-GVVTLPFSVREGI 309 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~-g~~~~~~~~r~~i 309 (605)
|+.+|++|||||||++||+.++.++.++|+++.+.|.|||+||||++++..+||++++|+.+.... +.. ......+..
T Consensus 149 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~-~~~~~~~~~ 227 (491)
T PRK10982 149 FSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL-AGLTMDKII 227 (491)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh-hhCCHHHHH
Confidence 999999999999999999999999999999998779999999999999999999999997532211 110 001111111
Q ss_pred HhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHH
Q 040300 310 NIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTT 389 (605)
Q Consensus 310 ~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKST 389 (605)
..+..... ...+... ....... ....++. ++.+ ...+++++|++.+| |+++|+|||||||||
T Consensus 228 ~~~~~~~~---~~~~~~~-----~~~~~~~-~i~~~~l-~~~~---~~~l~~vsl~i~~G-----e~~~l~G~nGsGKST 289 (491)
T PRK10982 228 AMMVGRSL---TQRFPDK-----ENKPGEV-ILEVRNL-TSLR---QPSIRDVSFDLHKG-----EILGIAGLVGAKRTD 289 (491)
T ss_pred HHHhCCCc---ccccccc-----cCCCCCc-EEEEeCc-cccc---CcccceeeEEEeCC-----cEEEEecCCCCCHHH
Confidence 11111000 0000000 0000111 1111222 3332 23688999999888 789999999999999
Q ss_pred HHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcCC---CCCcCcHHHH-----HHhhhcc-C-CCC---HH
Q 040300 390 FIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKIS---PKFQSTVRHL-----LHQKIRD-S-YTH---PQ 446 (605)
Q Consensus 390 Llk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~~---~~~~~tv~~~-----~~~~~~~-~-~~~---~~ 446 (605)
|+|+|+|+.+|++|++. +..+. ...++|+||+.. .....++.++ +...... . ... ..
T Consensus 290 Ll~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (491)
T PRK10982 290 IVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS 369 (491)
T ss_pred HHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH
Confidence 99999999999999985 22221 123899999742 2223455443 2111000 1 111 23
Q ss_pred HHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 040300 447 FVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525 (605)
Q Consensus 447 ~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvs 525 (605)
.+.++++.+++. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..++++|+++.. +|.|||+||
T Consensus 370 ~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vs 448 (491)
T PRK10982 370 DTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIIS 448 (491)
T ss_pred HHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEEC
Confidence 467789999995 578999999999999999999999999999999999999999999999999999865 599999999
Q ss_pred cCHHHHHhhcCEEEEEeCCcc
Q 040300 526 HDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 526 HD~~~~~~~adrviv~~g~~~ 546 (605)
||++++..+|||+++|+.+..
T Consensus 449 Hd~~~~~~~~d~v~~l~~g~i 469 (491)
T PRK10982 449 SEMPELLGITDRILVMSNGLV 469 (491)
T ss_pred CChHHHHhhCCEEEEEECCEE
Confidence 999999999999999986543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-69 Score=593.19 Aligned_cols=439 Identities=26% Similarity=0.361 Sum_probs=304.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccc-------hhh
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGS-------ELQ 153 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~-------~l~ 153 (605)
++++.||... -+.+++ .+.+|+++||||+||+|||||||+|+|.+.|+.|+|..++.+. +.++... .+.
T Consensus 8 ~ls~~~g~~~-l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~--v~~l~Q~~~~~~~~tv~ 84 (530)
T COG0488 8 NLSLAYGDRP-LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLR--VGYLSQEPPLDPEKTVL 84 (530)
T ss_pred eeEEeeCCce-eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCce--EEEeCCCCCcCCCccHH
Confidence 3556776542 344555 3579999999999999999999999999999999987654432 1111100 000
Q ss_pred hhH----HHH--HHHHHHHhhcccccccchhhhhchh---hhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHH
Q 040300 154 NYF----TRI--LEDNLKAIIKPQYVDHIPKAVQGNV---GQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQR 224 (605)
Q Consensus 154 ~~~----~~~--~~~~~~~~~~~q~~~~~~~~~~~~v---~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QR 224 (605)
++. ..+ .......... ...+.. ....+.+ .+.+.....+.++..++..||+... ++++++||||||.|
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~R 161 (530)
T COG0488 85 DYVIEGFGELRELLAELEEAYA-LLADPD-DELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRR 161 (530)
T ss_pred HHHHhhhHHHHHHHHHHHHHHH-hcccch-hHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHH
Confidence 000 000 0000000000 000000 0000011 1112223446788899999999877 99999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc-----ccccccc
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK-----PGAYGVV 299 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~-----~~~~g~~ 299 (605)
|+||+||+.+||+|||||||||||..++.|+-+.|.++ .| |||+||||.+|++.+|++|+.++.+ +|.|..+
T Consensus 162 v~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 162 VALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHH
Confidence 99999999999999999999999999999888888754 35 9999999999999999999999643 3444332
Q ss_pred ccchhhH---------------HHHHhhhcCCCCCc--------------ccc---------cccccccccccCCCc---
Q 040300 300 TLPFSVR---------------EGINIFLAGFVPTE--------------NLR---------FRDESLTFRVAETPQ--- 338 (605)
Q Consensus 300 ~~~~~~r---------------~~i~~~l~g~~~~e--------------~~~---------~r~~~~~~~~~~~~~--- 338 (605)
......+ .....|...+.... .+. .+..+..+.+.....
T Consensus 239 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g 318 (530)
T COG0488 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLG 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCC
Confidence 2111110 00111111110000 000 000111011111110
Q ss_pred chhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEee
Q 040300 339 ESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYK 418 (605)
Q Consensus 339 ~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~ 418 (605)
..+....+. ++.|++....+.+++|.+..| +++||+||||+|||||||+|+|.+.|.+|.+. .....++||.
T Consensus 319 ~~vl~~~~~-~~~y~~~~~l~~~~s~~i~~g-----~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~--~g~~v~igyf 390 (530)
T COG0488 319 KLVLEFENV-SKGYDGGRLLLKDLSFRIDRG-----DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK--VGETVKIGYF 390 (530)
T ss_pred CeeEEEecc-ccccCCCceeecCceEEecCC-----CEEEEECCCCCCHHHHHHHHhhhcccCCceEE--eCCceEEEEE
Confidence 101122233 677765444678999998888 79999999999999999999999999999874 2234789999
Q ss_pred cCcCCC-CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 419 PQKISP-KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 419 ~q~~~~-~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+|+... ....|+.+++...... .....+...|..|++. +...+++..||||||-||+||+.++.+|++||||||||
T Consensus 391 ~Q~~~~l~~~~t~~d~l~~~~~~--~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTN 468 (530)
T COG0488 391 DQHRDELDPDKTVLEELSEGFPD--GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTN 468 (530)
T ss_pred EehhhhcCccCcHHHHHHhhCcc--ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCc
Confidence 998743 2445888877543222 1156788999999998 56789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
|||++++..+.++|.+| .+|||+||||.+|+..+|++++++++
T Consensus 469 hLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 469 HLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred cCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 99999999999998876 78999999999999999999999997
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-69 Score=611.12 Aligned_cols=452 Identities=24% Similarity=0.357 Sum_probs=302.4
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhc-------cchhhh
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFR-------GSELQN 154 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~-------g~~l~~ 154 (605)
++++||.. ..|++++ .+.+|+++||+|+||||||||+|+|+|+++|+.|+|....... +.++. ...+..
T Consensus 7 ls~~~g~~-~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~--i~~~~q~~~~~~~~~~~~ 83 (638)
T PRK10636 7 LQIRRGVR-VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQ--LAWVNQETPALPQPALEY 83 (638)
T ss_pred EEEEeCCc-eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCE--EEEEecCCCCCCCCHHHH
Confidence 45566654 2455555 4589999999999999999999999999999999985322110 00100 011110
Q ss_pred hHHHH-----HHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHH
Q 040300 155 YFTRI-----LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIA 228 (605)
Q Consensus 155 ~~~~~-----~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA 228 (605)
.++.. +...+.............. ..+. .+.+.......++.++++.+||. +.+++++.+|||||||||+||
T Consensus 84 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA 161 (638)
T PRK10636 84 VIDGDREYRQLEAQLHDANERNDGHAIAT-IHGK-LDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLA 161 (638)
T ss_pred HHHhhHHHHHHHHHHHHHhccCCHHHHHH-HHHH-HHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHH
Confidence 11000 0000000000000000000 0000 00011123346788999999997 578999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcc-----ccccccccch
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKP-----GAYGVVTLPF 303 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~-----~~~g~~~~~~ 303 (605)
+||+.+|+||||||||||||+.++.++.++|+++ +.|||+||||+++++.+||+|++|+++. |.|..+....
T Consensus 162 ~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~ 238 (638)
T PRK10636 162 QALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQR 238 (638)
T ss_pred HHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHHHH
Confidence 9999999999999999999999999999988875 5799999999999999999999997432 2222111111
Q ss_pred hhHH------------HH---HhhhcCCCCC--------------cccc-----cccccccccccCCC--cchhhhhhhh
Q 040300 304 SVRE------------GI---NIFLAGFVPT--------------ENLR-----FRDESLTFRVAETP--QESAEEIETY 347 (605)
Q Consensus 304 ~~r~------------~i---~~~l~g~~~~--------------e~~~-----~r~~~~~~~~~~~~--~~~~~~~~~~ 347 (605)
..+. .+ ..+...+... +.+. .......+.+..+. ........+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 318 (638)
T PRK10636 239 ATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRAPESLPNPLLKMEKV 318 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEecCCCccCCCceEEEEee
Confidence 0000 00 0011100000 0000 00001111111110 0101112233
Q ss_pred eeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCC--CC
Q 040300 348 ARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS--PK 425 (605)
Q Consensus 348 ~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~--~~ 425 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++.. ....+++|++|+.. ..
T Consensus 319 -~~~y~~-~~il~~isl~i~~G-----e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~--~~~~~igy~~Q~~~~~l~ 389 (638)
T PRK10636 319 -SAGYGD-RIILDSIKLNLVPG-----SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL--AKGIKLGYFAQHQLEFLR 389 (638)
T ss_pred -EEEeCC-eeeeccceEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE--CCCEEEEEecCcchhhCC
Confidence 667765 34688899988888 799999999999999999999999999999741 12357999999742 22
Q ss_pred CcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040300 426 FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRI 504 (605)
Q Consensus 426 ~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~ 504 (605)
...++.+.+... .. ......+.++++.+++. ...++++.+|||||||||+||++|+.+|+||||||||+|||+.++.
T Consensus 390 ~~~~~~~~~~~~-~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~ 467 (638)
T PRK10636 390 ADESPLQHLARL-AP-QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 467 (638)
T ss_pred ccchHHHHHHHh-Cc-hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 234666554221 11 11234677899999996 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 505 VAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 505 ~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
.+.++|+++ +.|||+||||++++..+|||+++|+++... ...|++.+..
T Consensus 468 ~l~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~-~~~g~~~~~~ 516 (638)
T PRK10636 468 ALTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVE-PFDGDLEDYQ 516 (638)
T ss_pred HHHHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EcCCCHHHHH
Confidence 999999987 359999999999999999999999865432 2567777763
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=590.32 Aligned_cols=454 Identities=23% Similarity=0.309 Sum_probs=301.7
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++..... ..+.+... ....+......
T Consensus 7 ls~~~~~~-~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~~i~~~~q-~~~~~~~~tv~ 82 (530)
T PRK15064 7 ITMQFGAK-PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--ERLGKLRQ-DQFAFEEFTVL 82 (530)
T ss_pred EEEEeCCc-EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEec-cCCcCCCCcHH
Confidence 44566543 3456666 45899999999999999999999999999999999753211 00111100 00000000001
Q ss_pred HHHHHhhc------------ccccccchhhhhchhhhh------cCchHHHHHHHHHHhhcCCchh-hcccCCCCChHHH
Q 040300 162 DNLKAIIK------------PQYVDHIPKAVQGNVGQV------LDQKDERDMKADLCTDLDLNQV-IDRNVGDLSGGEL 222 (605)
Q Consensus 162 ~~~~~~~~------------~q~~~~~~~~~~~~v~~~------l~~~~~~~~~~~~l~~l~L~~~-~dr~v~~LSGGe~ 222 (605)
+++..... .+. ........-++.+. +.....+.++.++++.+||.+. .++++.+|||||+
T Consensus 83 e~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~ 161 (530)
T PRK15064 83 DTVIMGHTELWEVKQERDRIYAL-PEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWK 161 (530)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHH
Confidence 11100000 000 00000000001000 1112234568889999999864 4688999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccc-cc-cccc
Q 040300 223 QRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPG-AY-GVVT 300 (605)
Q Consensus 223 QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~-~~-g~~~ 300 (605)
|||+||+||+.+|++|||||||++||+..+.++.++|++ .+.|||+||||++++..+||+|++|+.+.. .| |.+.
T Consensus 162 qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 162 LRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYD 238 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHH
Confidence 999999999999999999999999999999999998864 489999999999999999999999975432 11 1111
Q ss_pred cchhhHH----H-----------H---HhhhcCCCCC--------------ccc---cccc--cccc-ccccCCC--cch
Q 040300 301 LPFSVRE----G-----------I---NIFLAGFVPT--------------ENL---RFRD--ESLT-FRVAETP--QES 340 (605)
Q Consensus 301 ~~~~~r~----~-----------i---~~~l~g~~~~--------------e~~---~~r~--~~~~-~~~~~~~--~~~ 340 (605)
.-...++ . + ..+....... +.. .... .... ....... ...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (530)
T PRK15064 239 EYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRN 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccccCCccccCceeeCCCCCCCCCc
Confidence 0000000 0 0 0000000000 000 0000 0000 0000000 000
Q ss_pred hhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecC
Q 040300 341 AEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420 (605)
Q Consensus 341 ~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q 420 (605)
.....+. +++|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++.. .....++|++|
T Consensus 319 ~l~~~~l-~~~~~~~-~~l~~is~~i~~G-----e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~--~~~~~i~~~~q 389 (530)
T PRK15064 319 ALEVENL-TKGFDNG-PLFKNLNLLLEAG-----ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW--SENANIGYYAQ 389 (530)
T ss_pred eEEEEee-EEeeCCc-eeecCcEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CCceEEEEEcc
Confidence 1112233 6677653 3688899988888 789999999999999999999999999999741 12356999999
Q ss_pred cCC--CCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 421 KIS--PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 421 ~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
+.. .....|+.+++... .........+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 390 ~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~ 468 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQW-RQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH 468 (530)
T ss_pred cccccCCCCCcHHHHHHHh-ccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 864 22346898876421 11112345677899999994 788999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||+.++..+.++|+++ +.|||+||||++++..+|||+++|+++..+ ...+++.++++
T Consensus 469 LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~-~~~g~~~~~~~ 525 (530)
T PRK15064 469 MDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVV-DFSGTYEEYLR 525 (530)
T ss_pred CCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EcCCCHHHHHH
Confidence 9999999999999886 459999999999999999999999865432 24567776654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-67 Score=590.47 Aligned_cols=462 Identities=22% Similarity=0.306 Sum_probs=307.0
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.....|++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++...... .+.++
T Consensus 6 ~l~i~~l~--------~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~--~i~~v 75 (556)
T PRK11819 6 IYTMNRVS--------KVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI--KVGYL 75 (556)
T ss_pred EEEEeeEE--------EEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC--EEEEE
Confidence 57776654 46652123456666 458999999999999999999999999999999998532110 01111
Q ss_pred c-cchhhhhHHHHHHHHHHHhhcc-------------ccccc---chhhh--hchhhhh---cCchHHHHHHHHHHhhcC
Q 040300 148 R-GSELQNYFTRILEDNLKAIIKP-------------QYVDH---IPKAV--QGNVGQV---LDQKDERDMKADLCTDLD 205 (605)
Q Consensus 148 ~-g~~l~~~~~~~~~~~~~~~~~~-------------q~~~~---~~~~~--~~~v~~~---l~~~~~~~~~~~~l~~l~ 205 (605)
. ...+.. .....+++...... .+... ..... ...+.+. +...+...++.++++.+|
T Consensus 76 ~Q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 153 (556)
T PRK11819 76 PQEPQLDP--EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR 153 (556)
T ss_pred ecCCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCC
Confidence 0 000000 00011111100000 00000 00000 0000000 111122456888999999
Q ss_pred CchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCE
Q 040300 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 206 L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~ 285 (605)
|.. +++++.+|||||||||+||+||+.+|++||||||||+||+.++.++.++|+++. .|||+||||++++..+||+
T Consensus 154 l~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d~ 229 (556)
T PRK11819 154 CPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAGW 229 (556)
T ss_pred CCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCe
Confidence 964 799999999999999999999999999999999999999999999999999873 5999999999999999999
Q ss_pred EEEEeCccc-cc-ccccc---chh--h----------HHHHH---hhhcC----CC-----------C--Cccccccccc
Q 040300 286 ICCLYGKPG-AY-GVVTL---PFS--V----------REGIN---IFLAG----FV-----------P--TENLRFRDES 328 (605)
Q Consensus 286 i~vl~g~~~-~~-g~~~~---~~~--~----------r~~i~---~~l~g----~~-----------~--~e~~~~r~~~ 328 (605)
|++|+.+.. .| |.+.. ... . +..+. .+... .. + ......++..
T Consensus 230 i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (556)
T PRK11819 230 ILELDRGRGIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKARQAKSKARLARYEELLSEEYQKRNET 309 (556)
T ss_pred EEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccccccCCC
Confidence 999974321 12 11110 000 0 00000 00000 00 0 0000000000
Q ss_pred ccccccCCC--cchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee
Q 040300 329 LTFRVAETP--QESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS 406 (605)
Q Consensus 329 ~~~~~~~~~--~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~ 406 (605)
..+...... ........+. ++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.
T Consensus 310 ~~~~~~~~~~~~~~~l~~~~l-~~~~~~~-~~l~~isl~i~~G-----e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~ 382 (556)
T PRK11819 310 NEIFIPPGPRLGDKVIEAENL-SKSFGDR-LLIDDLSFSLPPG-----GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK 382 (556)
T ss_pred ceeecCCCCCCCCeEEEEEeE-EEEECCe-eeecceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 000000000 0101122233 6677653 4688999998888 78999999999999999999999999999985
Q ss_pred ccccCcceeEeecCcC-CCCCcCcHHHHHHhhhcc-CC-CCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHH
Q 040300 407 DVEIPEFNVSYKPQKI-SPKFQSTVRHLLHQKIRD-SY-THPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 407 ~~~~~~~~i~y~~q~~-~~~~~~tv~~~~~~~~~~-~~-~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
. .....++|+||+. ......|+.+++...... .. ........+++.+++.. ..++++.+|||||||||+|||||
T Consensus 383 ~--~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 460 (556)
T PRK11819 383 I--GETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTL 460 (556)
T ss_pred E--CCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 2 1234699999985 344567999987542211 11 11234557899999974 67999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC-CcceeeecCChhhhhcc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG-QPSVDCVANAPQSLLTG 560 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g-~~~~~~~~~~p~~~~~~ 560 (605)
+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||++++..+|||++++++ +... ...++..+..+.
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~-~~~g~~~~~~~~ 534 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLEF----PGCAVVISHDRWFLDRIATHILAFEGDSQVE-WFEGNFQEYEED 534 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhCCEEEEEECCCeEE-EecCCHHHHHHH
Confidence 9999999999999999999999999999986 24899999999999999999999984 4332 345777666554
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=585.42 Aligned_cols=461 Identities=22% Similarity=0.297 Sum_probs=303.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.....+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++...... .+.++
T Consensus 4 ~i~~~nl--------s~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~--~i~~v 73 (552)
T TIGR03719 4 IYTMNRV--------SKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGI--KVGYL 73 (552)
T ss_pred EEEEeeE--------EEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC--EEEEE
Confidence 4666654 556652123455565 458999999999999999999999999999999998532110 01111
Q ss_pred ccc-hhhhhHHHHHHHHHHHhhcccc-----cc------cch-hh------hhchhhhh---cCchHHHHHHHHHHhhcC
Q 040300 148 RGS-ELQNYFTRILEDNLKAIIKPQY-----VD------HIP-KA------VQGNVGQV---LDQKDERDMKADLCTDLD 205 (605)
Q Consensus 148 ~g~-~l~~~~~~~~~~~~~~~~~~q~-----~~------~~~-~~------~~~~v~~~---l~~~~~~~~~~~~l~~l~ 205 (605)
... .+.. .....+++........ .. ..+ .. ....+.+. +.......++.++++.++
T Consensus 74 ~Q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (552)
T TIGR03719 74 PQEPQLDP--TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR 151 (552)
T ss_pred eccCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC
Confidence 100 0000 0001111111000000 00 000 00 00001111 111122356778899999
Q ss_pred CchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCE
Q 040300 206 LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 206 L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~ 285 (605)
+.. +++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+
T Consensus 152 l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~ 227 (552)
T TIGR03719 152 CPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGW 227 (552)
T ss_pred CCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCe
Confidence 964 68999999999999999999999999999999999999999999999999876 35999999999999999999
Q ss_pred EEEEeCcc-ccc-cccccchhhHH---------------HHH---hhhc----CC-------------CCCccccccccc
Q 040300 286 ICCLYGKP-GAY-GVVTLPFSVRE---------------GIN---IFLA----GF-------------VPTENLRFRDES 328 (605)
Q Consensus 286 i~vl~g~~-~~~-g~~~~~~~~r~---------------~i~---~~l~----g~-------------~~~e~~~~r~~~ 328 (605)
+++|..+. ..| |.+......++ .+. .+.. +. ....+...++..
T Consensus 228 v~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (552)
T TIGR03719 228 ILELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKARQAKSKARLARYEELLSQEFQKRNET 307 (552)
T ss_pred EEEEECCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhcccccCCC
Confidence 99996432 112 21110000000 000 0000 00 000000000000
Q ss_pred ccccccCCC--cchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee
Q 040300 329 LTFRVAETP--QESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS 406 (605)
Q Consensus 329 ~~~~~~~~~--~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~ 406 (605)
..+...... ........+. ++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~l-~~~~~~~-~~l~~isl~i~~G-----e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~ 380 (552)
T TIGR03719 308 AEIYIPPGPRLGDKVIEAENL-SKGFGDK-LLIDDLSFKLPPG-----GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380 (552)
T ss_pred ceeecCCCCCCCCeEEEEeeE-EEEECCe-eeeccceEEEcCC-----CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence 000000000 0101112233 6677653 3688899998888 78999999999999999999999999999985
Q ss_pred ccccCcceeEeecCcCC-CCCcCcHHHHHHhhhcc-CC-CCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHH
Q 040300 407 DVEIPEFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SY-THPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 407 ~~~~~~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~-~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
. .....++|++|+.. .....|+.+++...... .. .......++++.+++.. ..++++.+|||||||||+||+||
T Consensus 381 ~--~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al 458 (552)
T TIGR03719 381 I--GETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTL 458 (552)
T ss_pred E--CCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 2 12346999999853 44457999987543211 11 11234567899999974 67999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC-CcceeeecCChhhhhc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG-QPSVDCVANAPQSLLT 559 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g-~~~~~~~~~~p~~~~~ 559 (605)
+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||++++..+|||+++|++ +... ...++..+..+
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~~viivsHd~~~~~~~~d~i~~l~~~~~~~-~~~g~~~~~~~ 531 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEF----AGCAVVISHDRWFLDRIATHILAFEGDSHVE-WFEGNYSEYEE 531 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC----CCeEEEEeCCHHHHHHhCCEEEEEECCCeEE-EeCCCHHHHHH
Confidence 9999999999999999999999999999987 24899999999999999999999985 3332 24566655543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=593.46 Aligned_cols=459 Identities=22% Similarity=0.308 Sum_probs=304.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChh-----h
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQ-----E 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~-----~ 142 (605)
+|++.|| +++|+.. ..|.+++ .+.+|+++||+|+||||||||+|+|+|+++|+.|+|....... .
T Consensus 3 ~l~i~~l--------s~~~~~~-~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q 73 (635)
T PRK11147 3 LISIHGA--------WLSFSDA-PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQ 73 (635)
T ss_pred EEEEeeE--------EEEeCCc-eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEecc
Confidence 5666665 4466543 2455555 3579999999999999999999999999999999985322100 0
Q ss_pred h-hhhhccchhhhhHHHH--HH------HHHHHhhccccc-ccchhhhhchhhhhc---CchHHHHHHHHHHhhcCCchh
Q 040300 143 I-LTYFRGSELQNYFTRI--LE------DNLKAIIKPQYV-DHIPKAVQGNVGQVL---DQKDERDMKADLCTDLDLNQV 209 (605)
Q Consensus 143 ~-~~~~~g~~l~~~~~~~--~~------~~~~~~~~~q~~-~~~~~~~~~~v~~~l---~~~~~~~~~~~~l~~l~L~~~ 209 (605)
. .....+..++...... +. ..+...+..... +.+.. ...+...+ .......++.++++.+||.
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-- 149 (635)
T PRK11147 74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNE--LAKLQEQLDHHNLWQLENRINEVLAQLGLD-- 149 (635)
T ss_pred CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHH--HHHHHHHHHhcCcccHHHHHHHHHHhCCCC--
Confidence 0 0000111111110000 00 000000000000 00000 00000001 1122356788999999997
Q ss_pred hcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 210 ~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
.++++.+|||||+|||+||+||+.+|+||||||||||||+.++.++.++|+++ +.|||+||||+++++.+||+|++|
T Consensus 150 ~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~~l~~~~d~i~~L 226 (635)
T PRK11147 150 PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSFIRNMATRIVDL 226 (635)
T ss_pred CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 48999999999999999999999999999999999999999999999999987 359999999999999999999999
Q ss_pred eCcc-----ccccccccchhhH------H------HH---HhhhcCCCCC------------cccc---c-c---ccccc
Q 040300 290 YGKP-----GAYGVVTLPFSVR------E------GI---NIFLAGFVPT------------ENLR---F-R---DESLT 330 (605)
Q Consensus 290 ~g~~-----~~~g~~~~~~~~r------~------~i---~~~l~g~~~~------------e~~~---~-r---~~~~~ 330 (605)
+.+. |.|..+......+ . .+ ..+....... +.+. . . .....
T Consensus 227 ~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 306 (635)
T PRK11147 227 DRGKLVSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRRERSERREVMGTAK 306 (635)
T ss_pred ECCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhccccccCCcee
Confidence 6432 2221111100000 0 00 0000000000 0000 0 0 00011
Q ss_pred ccccCCC--cchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeecc
Q 040300 331 FRVAETP--QESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDV 408 (605)
Q Consensus 331 ~~~~~~~--~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~ 408 (605)
+.+.... ........+. ++.|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++..
T Consensus 307 ~~~~~~~~~~~~~l~~~~l-~~~~~~~-~il~~vsl~i~~G-----e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~- 378 (635)
T PRK11147 307 MQVEEASRSGKIVFEMENV-NYQIDGK-QLVKDFSAQVQRG-----DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC- 378 (635)
T ss_pred EEeCCCCCCCCceEEEeee-EEEECCe-EEEcCcEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-
Confidence 1111110 0101122233 6777653 3688899988888 789999999999999999999999999999852
Q ss_pred ccCcceeEeecCcCC-CCCcCcHHHHHHhhhccC--CCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 409 EIPEFNVSYKPQKIS-PKFQSTVRHLLHQKIRDS--YTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 409 ~~~~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~~--~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
....+++|++|+.. .....||.+++....... ......+.++++.+++. +..++++.+|||||||||+||++|+.
T Consensus 379 -~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 379 -GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred -CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 12347999999753 344579999875422111 11134567889999996 57899999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe-CCcceeeecCChhhh
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE-GQPSVDCVANAPQSL 557 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~-g~~~~~~~~~~p~~~ 557 (605)
+|++|||||||+|||+.++..+.++|+++ +.|||+||||++++..+|||+++++ ++.. ....|+-.+.
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i-~~~~g~y~~y 526 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKI-GRYVGGYHDA 526 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeE-EEccCCHHHH
Confidence 99999999999999999999999998876 4699999999999999999999997 3433 2344554443
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=586.40 Aligned_cols=454 Identities=21% Similarity=0.256 Sum_probs=297.2
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCC---CCCCceeeCCCC-h--h--hhhhhhccchh
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKL---KPNLGRFNNPPD-W--Q--EILTYFRGSEL 152 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l---~p~~G~i~~~~~-~--~--~~~~~~~g~~l 152 (605)
+++++||... .|.+++ .+.+|+++||||+||||||||||+|+|.. .|+.|+|..-+. . . .....+.+...
T Consensus 182 nls~~y~~~~-ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~ 260 (718)
T PLN03073 182 NFSISVGGRD-LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDI 260 (718)
T ss_pred eEEEEeCCCE-EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhH
Confidence 4667786543 466666 46899999999999999999999999964 577787742100 0 0 00000000000
Q ss_pred hhhHHHHHHHHHHHhhccccc----------------ccchh-hhhchhhhh------cCchHHHHHHHHHHhhcCCc-h
Q 040300 153 QNYFTRILEDNLKAIIKPQYV----------------DHIPK-AVQGNVGQV------LDQKDERDMKADLCTDLDLN-Q 208 (605)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~q~~----------------~~~~~-~~~~~v~~~------l~~~~~~~~~~~~l~~l~L~-~ 208 (605)
.. .......... .+|.. ...+. .....+.++ ........++.+++..+||. +
T Consensus 261 ~~--~~~~~~~~~~--~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~ 336 (718)
T PLN03073 261 ER--TQLLEEEAQL--VAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPE 336 (718)
T ss_pred HH--HHHHHHHHHH--HHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChH
Confidence 00 0000000000 00000 00010 000111111 12223456788999999996 6
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
.+++++.+|||||+||++||+||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++
T Consensus 337 ~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEE
Confidence 789999999999999999999999999999999999999999999999999886 68999999999999999999999
Q ss_pred EeCccc-ccc----ccccchhh---------------HHHHHhhhcCCCCC--------------ccccc-----ccccc
Q 040300 289 LYGKPG-AYG----VVTLPFSV---------------REGINIFLAGFVPT--------------ENLRF-----RDESL 329 (605)
Q Consensus 289 l~g~~~-~~g----~~~~~~~~---------------r~~i~~~l~g~~~~--------------e~~~~-----r~~~~ 329 (605)
|+++.. .|+ .+...... +..+..+...+... +.+.. .+...
T Consensus 414 l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~~~~~~~~~~~ 493 (718)
T PLN03073 414 LHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPDY 493 (718)
T ss_pred EECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhhhhccccCCCc
Confidence 975422 121 11110000 00111111100000 00000 00000
Q ss_pred cccccCC---CcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee
Q 040300 330 TFRVAET---PQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS 406 (605)
Q Consensus 330 ~~~~~~~---~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~ 406 (605)
.+..+.. .........+. ++.|++....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++.
T Consensus 494 ~~~~~~~~~~~~~~~L~~~~l-s~~y~~~~~il~~vsl~i~~G-----e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~ 567 (718)
T PLN03073 494 KFEFPTPDDRPGPPIISFSDA-SFGYPGGPLLFKNLNFGIDLD-----SRIAMVGPNGIGKSTILKLISGELQPSSGTVF 567 (718)
T ss_pred eeecCCCccCCCCceEEEEee-EEEeCCCCeeEeccEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCceEE
Confidence 1111110 00001122333 677854334688999998888 78999999999999999999999999999984
Q ss_pred ccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 407 DVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 407 ~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
. ....+++|++|+.......+....+.............+.++++.+++. ...++++.+|||||||||+|||||+.+
T Consensus 568 ~--~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~ 645 (718)
T PLN03073 568 R--SAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 645 (718)
T ss_pred E--CCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence 1 1235799999975222222221111111001112345678899999998 478999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|||+++|+++... ...+++.+
T Consensus 646 p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~gtvIivSHd~~~i~~~~drv~~l~~G~i~-~~~g~~~~ 711 (718)
T PLN03073 646 PHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLMVSHDEHLISGSVDELWVVSEGKVT-PFHGTFHD 711 (718)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCCHHH
Confidence 9999999999999999999988888765 349999999999999999999999865432 23455544
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-65 Score=546.38 Aligned_cols=433 Identities=22% Similarity=0.287 Sum_probs=322.8
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++|+||.. -.|++++ .+++||+++|+|+||||||||+|+|+|.++|+.|+|. +.|......-..
T Consensus 12 ~~i~K~FggV-~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~-----------~~G~~~~~~sp~- 78 (500)
T COG1129 12 RGISKSFGGV-KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL-----------IDGKPVAFSSPR- 78 (500)
T ss_pred ecceEEcCCc-eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEE-----------ECCEEccCCCHH-
Confidence 3567788886 3566666 4689999999999999999999999999999999985 233322211100
Q ss_pred HHHHHHHhhcccccccchhh-hhchh---------hhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPKA-VQGNV---------GQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~~-~~~~v---------~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~ 229 (605)
..........+|.+...|.. +..++ ..+++...+++++.++++.+++....+.++.+||+||||.|+|||
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence 11122233344555544432 11111 123455678889999999999965599999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcccccccc-ccchhhHHH
Q 040300 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVV-TLPFSVREG 308 (605)
Q Consensus 230 aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~-~~~~~~r~~ 308 (605)
||..+++|+|||||||+|+..+...++++|++|+++|.+||+|||+++++..+||||.||+++..+-... ....+..+.
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~l 238 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDEL 238 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997543222222 234555555
Q ss_pred HHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHH
Q 040300 309 INIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKT 388 (605)
Q Consensus 309 i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKS 388 (605)
+..+....+.. .+.. + ......++ ....+ .++.+ ..+.+++|++.+| ||+||.|-=|||+|
T Consensus 239 v~~MvGr~~~~---~~~~-~---~~~~~~~~-~l~v~---~l~~~---~~~~dvSf~vr~G-----EIlGiaGLvGaGRT 299 (500)
T COG1129 239 VRLMVGRELED---LFPE-P---PEEGIGEP-VLEVR---NLSGG---GKVRDVSFTVRAG-----EILGIAGLVGAGRT 299 (500)
T ss_pred HHHhhCcchhh---hccc-c---cccCCCCc-EEEEe---cCCCC---CceeCceeEEeCC-----cEEEEeccccCCHH
Confidence 66555431110 1110 0 00000111 10001 11111 1367889998888 79999999999999
Q ss_pred HHHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcCC---CCCcCcHHHHHHhh-h---c-cCCCC----HH
Q 040300 389 TFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKIS---PKFQSTVRHLLHQK-I---R-DSYTH----PQ 446 (605)
Q Consensus 389 TLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~~---~~~~~tv~~~~~~~-~---~-~~~~~----~~ 446 (605)
.|+++|.|..++++|++. +.... ...++|+|.+-. ....+++.+|+... . . ..+.+ ..
T Consensus 300 El~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~ 379 (500)
T COG1129 300 ELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERA 379 (500)
T ss_pred HHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHH
Confidence 999999999999999885 22221 125999997632 34567888876322 1 1 11222 24
Q ss_pred HHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 040300 447 FVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525 (605)
Q Consensus 447 ~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvs 525 (605)
.++++.+.|++. ...++++.+||||+||||.|||||+.+|++|||||||.|+|+.++.+++++|++++.+ |++||+||
T Consensus 380 ~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iS 458 (500)
T COG1129 380 LAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMIS 458 (500)
T ss_pred HHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEe
Confidence 567888999998 6678999999999999999999999999999999999999999999999999999764 99999999
Q ss_pred cCHHHHHhhcCEEEEEeCCcc
Q 040300 526 HDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 526 HD~~~~~~~adrviv~~g~~~ 546 (605)
.|+.++..+||||+||.++..
T Consensus 459 SElpEll~~~DRIlVm~~Gri 479 (500)
T COG1129 459 SELPELLGLSDRILVMREGRI 479 (500)
T ss_pred CChHHHHhhCCEEEEEECCEE
Confidence 999999999999999986543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-65 Score=520.14 Aligned_cols=453 Identities=21% Similarity=0.302 Sum_probs=322.9
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC-----CceeeCCC-C-
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN-----LGRFNNPP-D- 139 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-----~G~i~~~~-~- 139 (605)
.-++|.||...|..+ +...-.+.+++ .+++||.+||||++|||||-..+.+.|+++-+ +|++.... +
T Consensus 5 ~lL~v~nLsV~f~~~-----~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dl 79 (534)
T COG4172 5 PLLSIRNLSVAFHQE-----GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDL 79 (534)
T ss_pred cceeeeccEEEEecC-----CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhh
Confidence 357888876544311 11123344444 35899999999999999999999999998643 34443110 0
Q ss_pred ---hhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhc-hhh------hhcCchHHHHHHHHHHhhcCCc--
Q 040300 140 ---WQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG-NVG------QVLDQKDERDMKADLCTDLDLN-- 207 (605)
Q Consensus 140 ---~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~-~v~------~~l~~~~~~~~~~~~l~~l~L~-- 207 (605)
.+..+...+|..+...|+.. .....|-..-+ .+. .-+.+...++++.++++.+|+.
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEP------------MtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEP------------MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP 147 (534)
T ss_pred hcCCHHHHhhhcccceEEEeccc------------ccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch
Confidence 01122334444433332211 01111111111 111 2234566788999999999995
Q ss_pred -hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCE
Q 040300 208 -QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 208 -~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~ 285 (605)
..++.++++|||||||||+||.||+.+|++||.||||+.||+.-+.++.++|++|.++ |+++++|||||..+..+|||
T Consensus 148 ~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADr 227 (534)
T COG4172 148 EKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADR 227 (534)
T ss_pred hhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhh
Confidence 3689999999999999999999999999999999999999999999999999999875 99999999999999999999
Q ss_pred EEEEeCcc-ccc-------cccccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCC---
Q 040300 286 ICCLYGKP-GAY-------GVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPT--- 354 (605)
Q Consensus 286 i~vl~g~~-~~~-------g~~~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--- 354 (605)
|+||+.+. ... .....||+. ..++.--.|..+ + ....... +...++. .+.|+-
T Consensus 228 V~VM~~G~ivE~~~t~~lF~~PqHpYTr-~Ll~aeP~g~~~---------p----~~~~~~~-ll~~~~v-~v~f~i~~g 291 (534)
T COG4172 228 VYVMQHGEIVETGTTETLFAAPQHPYTR-KLLAAEPSGDPP---------P----LPEDAPV-LLEVEDL-RVWFPIKGG 291 (534)
T ss_pred EEEEeccEEeecCcHHHHhhCCCChHHH-HHHhcCCCCCCC---------C----CCCCCCc-eEEecce-EEEEecCCc
Confidence 99996432 111 112233332 222111011000 0 0000011 1111222 333331
Q ss_pred -------ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------ccee
Q 040300 355 -------MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNV 415 (605)
Q Consensus 355 -------~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i 415 (605)
..++.++++|++..| |.+||+|++|||||||-++|.++++++ |.+. +.++. +.++
T Consensus 292 ~~~r~~~~~~AVd~isl~L~~g-----qTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~m 365 (534)
T COG4172 292 FLRRTVDHLRAVDGISLTLRRG-----QTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRM 365 (534)
T ss_pred cccccchheEEeccceeEecCC-----CeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhc
Confidence 123567888888887 799999999999999999999999887 8775 22221 2347
Q ss_pred EeecCcCC--CCCcCcHHHHHHhhhc--cCC----CCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 416 SYKPQKIS--PKFQSTVRHLLHQKIR--DSY----THPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 416 ~y~~q~~~--~~~~~tv~~~~~~~~~--~~~----~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
-.++|++. ....+||.+.+..... ... ...+.+.++|+..|++ ..++++|++.|||||||+||||||+.+|
T Consensus 366 QvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP 445 (534)
T COG4172 366 QVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKP 445 (534)
T ss_pred eEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCC
Confidence 78899864 3456799887754322 211 1235678899999998 6889999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
++++||||||+||..-+.++.++|+++.++.+.+.++||||+..+..+||+|+||.++.. ...|+.+++++..
T Consensus 446 ~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gki--VE~G~~~~if~~P 518 (534)
T COG4172 446 ELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKI--VEQGPTEAVFANP 518 (534)
T ss_pred cEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEE--eeeCCHHHHhcCC
Confidence 999999999999999999999999999888899999999999999999999999997654 4568888888764
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=495.21 Aligned_cols=440 Identities=21% Similarity=0.291 Sum_probs=324.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
++...| ++|+|+.. ..+++++ .+++||++||+|+||||||||+++|.|.++|++|+|. +
T Consensus 4 ~l~~~~--------itK~f~~~-~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~-----------v 63 (501)
T COG3845 4 ALEMRG--------ITKRFPGV-VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR-----------V 63 (501)
T ss_pred eEEEec--------cEEEcCCE-EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEE-----------E
Confidence 566665 45577732 3455555 4689999999999999999999999999999999984 2
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchh--------hhhcCchHHHHHHHHHHhhcCCchhhcccCCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNV--------GQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLS 218 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v--------~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LS 218 (605)
.|.+..---. .-.-.....+..|.+...|.. +..++ ...+.....++++.++.+.+||.-.+++++.+||
T Consensus 64 ~G~~v~~~sP-~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLs 142 (501)
T COG3845 64 DGKEVRIKSP-RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLS 142 (501)
T ss_pred CCEEeccCCH-HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCC
Confidence 2322110000 001122233445554444432 11111 1123445678899999999999989999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccc
Q 040300 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGV 298 (605)
Q Consensus 219 GGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~ 298 (605)
-||||||.|.+||.++|++|||||||+-|-|.+..+++..+++|+++|+|||+|||.+.++..+||++.||+.+.. .|.
T Consensus 143 VG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkv-vgt 221 (501)
T COG3845 143 VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKV-VGT 221 (501)
T ss_pred cchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeE-Eee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986542 233
Q ss_pred cc--cchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeE
Q 040300 299 VT--LPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQI 376 (605)
Q Consensus 299 ~~--~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~gei 376 (605)
+. .+.+..+....+....+...- .+....+.+. ....++. ++.-......+.++||++..| ||
T Consensus 222 ~~~~~~~t~~ela~lMvG~~v~~~~--------~~~~~~pg~~-vL~V~~L-~v~~~~~~~~v~~vs~~Vr~G-----EI 286 (501)
T COG3845 222 VDPVAETTEEELAELMVGREVVLRV--------VKPPSTPGEV-VLEVEDL-SVKDRRGVTAVKDVSFEVRAG-----EI 286 (501)
T ss_pred ecCCCCCCHHHHHHHhcCCcccccc--------ccCCCCCCCe-EEEEeee-EeecCCCCceeeeeeeEEecC-----cE
Confidence 22 233444444444332222110 0111111122 1111222 222222224578899999888 79
Q ss_pred EEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----C-----cceeEeecCcC---CCCCcCcHHHHHHhhhc---
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----P-----EFNVSYKPQKI---SPKFQSTVRHLLHQKIR--- 439 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~-----~~~i~y~~q~~---~~~~~~tv~~~~~~~~~--- 439 (605)
+||.|-.|.|.+.|+.+|+|+.+|.+|.+. +.+. + ...++|+|.+- ....++|+.+|+.....
T Consensus 287 vGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~ 366 (501)
T COG3845 287 VGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKK 366 (501)
T ss_pred EEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccc
Confidence 999999999999999999999999889875 3222 1 23689999864 34467789887643211
Q ss_pred ----cCCCC----HHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040300 440 ----DSYTH----PQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVI 510 (605)
Q Consensus 440 ----~~~~~----~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l 510 (605)
..+.+ ..++.++++.|++. .-.+.++.+||||++||+.+||-|..+|++||+.+||.|||+.+...+.+.|
T Consensus 367 ~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l 446 (501)
T COG3845 367 PFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446 (501)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHH
Confidence 11222 25678899999998 5667789999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 511 KRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 511 ~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
.+.. +.|++|++||-|++++..+||||.||.++..
T Consensus 447 ~e~r-~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri 481 (501)
T COG3845 447 LELR-DAGKAVLLISEDLDEILELSDRIAVIYEGRI 481 (501)
T ss_pred HHHH-hcCCEEEEEehhHHHHHHhhheeeeeeCCce
Confidence 9974 5699999999999999999999999986543
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-57 Score=475.92 Aligned_cols=444 Identities=22% Similarity=0.297 Sum_probs=291.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeC-------CC-Ch
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNN-------PP-DW 140 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~-------~~-~~ 140 (605)
+++|.||...+..-... -...|.| .+|+.+||+|+|||||||+|++|+|-..|..-++.. +| .|
T Consensus 75 dvk~~sls~s~~g~~l~--kd~~~El------~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELI--KDVTLEL------NRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred cceeeeeeeccCCceee--eeeeEEe------cCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchH
Confidence 67777776543211111 1123555 699999999999999999999999999886443321 11 12
Q ss_pred hhhhhhh--ccchhhhhHHHHHHHHHHHhhcccccccchhhhhch---hh---hhcCchHHHHHHHHHHhhcCC-chhhc
Q 040300 141 QEILTYF--RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGN---VG---QVLDQKDERDMKADLCTDLDL-NQVID 211 (605)
Q Consensus 141 ~~~~~~~--~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~---v~---~~l~~~~~~~~~~~~l~~l~L-~~~~d 211 (605)
+.+...+ ...+.+. ++.... .+........... .. +.++......++..++..+|. .++.+
T Consensus 147 ~av~~v~~~~~~e~~r-----le~~~E-----~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~ 216 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKR-----LEYLAE-----DLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQD 216 (614)
T ss_pred HHHHHHhhhhHHHHHH-----HHHHHH-----HHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHH
Confidence 1111000 0000000 000000 0101101100001 11 112223334566777777776 57899
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+.+|||||+.|++|||+|..+|++|+|||||+|||+.++.++-+.|.+.-. .++++++|+.+++..+|.+|+.|+.
T Consensus 217 k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 217 KKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred HHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchhhhhhHhhhhheecc
Confidence 99999999999999999999999999999999999999988877777665422 2899999999999999999999987
Q ss_pred ccccc-----cccccchhh------------HHH-------HHhhhcCCC-------CCccc------------cccccc
Q 040300 292 KPGAY-----GVVTLPFSV------------REG-------INIFLAGFV-------PTENL------------RFRDES 328 (605)
Q Consensus 292 ~~~~~-----g~~~~~~~~------------r~~-------i~~~l~g~~-------~~e~~------------~~r~~~ 328 (605)
+...| ..+....+. .+. |..+..|+. ..++. .+.+..
T Consensus 295 kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~ 374 (614)
T KOG0927|consen 295 KKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKV 374 (614)
T ss_pred cceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCce
Confidence 65332 111111100 001 111111100 00000 001111
Q ss_pred ccccccCCCc--chhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee
Q 040300 329 LTFRVAETPQ--ESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS 406 (605)
Q Consensus 329 ~~~~~~~~~~--~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~ 406 (605)
+.|++.+... +......++ +|.|++....+.+++|-+..+ +.+++|||||+|||||||++.|.+.|+.|.+.
T Consensus 375 l~~~f~~vg~~p~pvi~~~nv-~F~y~~~~~iy~~l~fgid~~-----srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs 448 (614)
T KOG0927|consen 375 LSFRFPEVGKIPPPVIMVQNV-SFGYSDNPMIYKKLNFGIDLD-----SRVALVGPNGAGKSTLLKLITGDLQPTIGMVS 448 (614)
T ss_pred EEEEcccccCCCCCeEEEecc-ccCCCCcchhhhhhhcccCcc-----cceeEecCCCCchhhhHHHHhhcccccccccc
Confidence 1222211111 101112233 666664433466667766666 69999999999999999999999999999873
Q ss_pred ccccCcceeEeecCcCCC--CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 407 DVEIPEFNVSYKPQKISP--KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 407 ~~~~~~~~i~y~~q~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
......+++..|+... ..+.++.+++...... ....+....++.++|+. +..+.++.+||+|||.||++|+.++
T Consensus 449 --~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~-~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 449 --RHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPD-EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred --ccccccchhhhhhhHhhcCcchhHHHHHHHhccc-cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHh
Confidence 2223456777777543 2344666666543322 23346778899999999 6778899999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+.|.+|||||||+|||+++...+.+.|.++ .++||+||||+.++..+|+++++.+++.
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~~~ 583 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCENGT 583 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhccCc
Confidence 999999999999999999999988888876 6789999999999999999999988654
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-57 Score=456.49 Aligned_cols=246 Identities=62% Similarity=0.966 Sum_probs=222.7
Q ss_pred eecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCc
Q 040300 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQST 429 (605)
Q Consensus 350 ~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~t 429 (605)
|+|++..+.+++|+|++.+|++.+||+++|+||||||||||+++|+|+++|++|++. +....++|++|+....+..|
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~---~~g~~i~~~~q~~~~~~~~t 77 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE---IELDTVSYKPQYIKADYEGT 77 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE---ECCceEEEecccccCCCCCC
Confidence 578888888999999999999999999999999999999999999999999999874 22337999999977667789
Q ss_pred HHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040300 430 VRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509 (605)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~ 509 (605)
|.+++...............++++.+++.+..++++.+|||||+|||+||+||+.+|++|||||||++||+.++..+.++
T Consensus 78 v~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~ 157 (246)
T cd03237 78 VRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKV 157 (246)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 99987532211112234567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccccceecceEEEecCCCCcceeecCCCC
Q 040300 510 IKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDST 589 (605)
Q Consensus 510 l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~rpr~n~~~s~ 589 (605)
|+++.++.++|||+||||++++..+|||+++|+++++..+..++|.++..+||.|++.++++||+||.++|||+||+||+
T Consensus 158 l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~ 237 (246)
T cd03237 158 IRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDITFRRDPETGRPRINKLGSV 237 (246)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHHHHHHHHHHCCCEEecCcccCCCCCCCcchH
Confidence 99987666899999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred CcHhhhhcC
Q 040300 590 KDRDQKAAG 598 (605)
Q Consensus 590 ~~~~~~~~~ 598 (605)
+|||||+.|
T Consensus 238 ~~~~~~~~~ 246 (246)
T cd03237 238 KDREQKESG 246 (246)
T ss_pred HHHHHHhcC
Confidence 999999987
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=470.75 Aligned_cols=421 Identities=23% Similarity=0.339 Sum_probs=275.2
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
....||... -|.+-+ .+..|..+||+|+||+|||||||+|+- |.++.-+.-+++ +|....... ..+.
T Consensus 86 fdLa~G~k~-LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~----~g~~t~~~~-~~l~ 153 (582)
T KOG0062|consen 86 FDLAYGGKI-LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEV----RGDDTEALQ-SVLE 153 (582)
T ss_pred eeeeecchh-hhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhhe----eccchHHHh-hhhh
Confidence 344677642 233333 346899999999999999999999987 444432222221 111110000 0000
Q ss_pred HHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
...... .++..-+ ++.....-.+....+|..+|+. ++..+++++||||||.|++|||||..+||+|||
T Consensus 154 ~D~~~~---dfl~~e~--------~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 154 SDTERL---DFLAEEK--------ELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred ccHHHH---HHHHhhh--------hhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEee
Confidence 000000 0000000 0000001122233488899997 577899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcc-----ccccccccch------------
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKP-----GAYGVVTLPF------------ 303 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~-----~~~g~~~~~~------------ 303 (605)
|||||+||+.+..|+-..|.. .+.|+|+||||..|++.+|..|+.+.+.. |+|..+....
T Consensus 223 DEPTNhLDv~av~WLe~yL~t---~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qrefe 299 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQT---WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFE 299 (582)
T ss_pred cCCcccchhHHHHHHHHHHhh---CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhhcc
Confidence 999999999987777766655 46899999999999999999999986543 3333221111
Q ss_pred ---hhHHHHHhhhcCCCCCcccccccccc----------------------cccccCCCcc---hhhhhhhheeeecCCc
Q 040300 304 ---SVREGINIFLAGFVPTENLRFRDESL----------------------TFRVAETPQE---SAEEIETYARYKYPTM 355 (605)
Q Consensus 304 ---~~r~~i~~~l~g~~~~e~~~~r~~~~----------------------~~~~~~~~~~---~~~~~~~~~~~~y~~~ 355 (605)
..|..+..|.+.|.-..+ +..++ .|.++...+. .......+ .|.|+..
T Consensus 300 ~q~~~R~h~q~fid~FrYna~---ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V-~f~y~p~ 375 (582)
T KOG0062|consen 300 VQMKYRAHLQVFIDKFRYNAA---RASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYV-AFEYTPS 375 (582)
T ss_pred hHHHHHHHHHHHHHHhccCcc---cchhHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEee-eccCCCc
Confidence 112333333332211000 00000 0111110000 00000011 2333221
Q ss_pred e-eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHH-
Q 040300 356 V-KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHL- 433 (605)
Q Consensus 356 ~-~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~- 433 (605)
. ..+.+++++...- +.++++|+||+||||++|++.|.+.|..|.+. ..++.+++|..|+.-..++..|..+
T Consensus 376 ~y~~~~~~~~d~e~~-----sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~--~~~r~ri~~f~Qhhvd~l~~~v~~vd 448 (582)
T KOG0062|consen 376 EYQWRKQLGLDRESD-----SRISRVGENGDGKSTLLKILKGDLTPTRGIVG--RHPRLRIKYFAQHHVDFLDKNVNAVD 448 (582)
T ss_pred chhhhhccCCccchh-----hhhheeccCchhHHHHHHHHhccCCcccceee--ecccceecchhHhhhhHHHHHhHHHH
Confidence 1 1223333433333 58999999999999999999999999998752 3457789999998544444444432
Q ss_pred -HHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040300 434 -LHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK 511 (605)
Q Consensus 434 -~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 511 (605)
+..... -...+.++.-+..|||. ++..+++.+|||||+-||++|.+..++|.+|+|||||||||.++...+.+.|+
T Consensus 449 ~~~~~~p--G~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 449 FMEKSFP--GKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALK 526 (582)
T ss_pred HHHHhCC--CCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHH
Confidence 222211 12456678889999998 68888899999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 512 RFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 512 ~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
+| ++.||+||||.+++..+|+.+|+.+++..
T Consensus 527 ~F----~GGVv~VSHd~~fi~~~c~E~Wvve~g~v 557 (582)
T KOG0062|consen 527 NF----NGGVVLVSHDEEFISSLCKELWVVEDGKV 557 (582)
T ss_pred hc----CCcEEEEECcHHHHhhcCceeEEEcCCcE
Confidence 87 67899999999999999999999987643
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=520.04 Aligned_cols=188 Identities=21% Similarity=0.217 Sum_probs=157.4
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecCcCCCCCcCcHHHHHHhh--hc
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQKISPKFQSTVRHLLHQK--IR 439 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q~~~~~~~~tv~~~~~~~--~~ 439 (605)
++.+||++||+||||||||||+|+|+|+++|++|++. +..+. ...|||+||.......+|++|++... .+
T Consensus 1961 ~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~ 2040 (2272)
T TIGR01257 1961 GVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR 2040 (2272)
T ss_pred EEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc
Confidence 4455689999999999999999999999999999985 22221 23599999987666678999987532 21
Q ss_pred cCCC--CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Q 040300 440 DSYT--HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517 (605)
Q Consensus 440 ~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 517 (605)
.... ....+.++++.++|.+..++++.+|||||||||+||+||+.+|+||||||||+|||+.+++.++++|+++.+ .
T Consensus 2041 g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~ 2119 (2272)
T TIGR01257 2041 GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR-E 2119 (2272)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 1111 123456789999999999999999999999999999999999999999999999999999999999999865 4
Q ss_pred CcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 518 KKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 518 g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+|||++|||++++..+|||+++|.++.. ...|+++++...
T Consensus 2120 g~TIILtTH~mee~e~lcDrV~IL~~G~i--~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2120 GRAVVLTSHSMEECEALCTRLAIMVKGAF--QCLGTIQHLKSK 2160 (2272)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHHH
Confidence 89999999999999999999999986543 466899998664
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=483.17 Aligned_cols=199 Identities=25% Similarity=0.394 Sum_probs=158.0
Q ss_pred eeecCCce--eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTMV--KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~--~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
.|.||... ..++|++|++..| +-+|||||+||||||.+.+|-..+.|++|.+. +.++. +.+++.
T Consensus 994 ~F~YPsRP~~~Il~~l~l~i~~G-----qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~l 1068 (1228)
T KOG0055|consen 994 SFAYPTRPDVPVLNNLSLSIRAG-----QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGL 1068 (1228)
T ss_pred EeeCCCCCCchhhcCCcEEecCC-----CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcce
Confidence 35566432 3567888888888 68999999999999999999999999999875 23332 235999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchh-------hcc----CcCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQL-------MDQ----EVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~----~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+.|++. .|..|++||+.... .. .....+.+.++.-++.++ .|. .-.+||||||||+||||||+++|
T Consensus 1069 VsQEP~-LF~~TIrENI~YG~-~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnP 1145 (1228)
T KOG0055|consen 1069 VSQEPV-LFNGTIRENIAYGS-EE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNP 1145 (1228)
T ss_pred eccCch-hhcccHHHHHhccC-CC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCC
Confidence 999975 47889999986542 11 234455555555444332 233 45689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+||||||-||+||.++.+.+.++|.+.. .|.|.|+|.|-+..+.+ ||.|+|++++.. ...|+-+++...
T Consensus 1146 kILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~V--vE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1146 KILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLSTIQN-ADVIAVLKNGKV--VEQGTHDELLAK 1214 (1228)
T ss_pred CeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchhhhhc-CCEEEEEECCEE--EecccHHHHHhC
Confidence 9999999999999999999999999974 48999999999999976 999999997654 456888887763
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-52 Score=505.81 Aligned_cols=201 Identities=22% Similarity=0.299 Sum_probs=158.7
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC--------------------------
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-------------------------- 400 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-------------------------- 400 (605)
+|+|++. ..++++++|++.+| +.+||+||+|||||||+++|.|++.|
T Consensus 1172 sF~Y~~~~~~~vL~~lsl~i~~G-----~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 (1466)
T PTZ00265 1172 NFRYISRPNVPIYKDLTFSCDSK-----KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDE 1246 (1466)
T ss_pred EEECCCCCCCccccCeeEEEcCC-----CEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccc
Confidence 6778642 24688999998888 68999999999999999999999998
Q ss_pred ----------------------------Ceeeee--ccccC-------cceeEeecCcCCCCCcCcHHHHHHhhhccCCC
Q 040300 401 ----------------------------DSVEDS--DVEIP-------EFNVSYKPQKISPKFQSTVRHLLHQKIRDSYT 443 (605)
Q Consensus 401 ----------------------------~~G~i~--~~~~~-------~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~ 443 (605)
++|+|. +.++. +..|+|+||++. .|.+|+++|+..... ..
T Consensus 1247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~-LF~gTIreNI~~g~~--~a 1323 (1466)
T PTZ00265 1247 EQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM-LFNMSIYENIKFGKE--DA 1323 (1466)
T ss_pred ccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc-cccccHHHHHhcCCC--CC
Confidence 478775 22221 235999999975 478999999865422 12
Q ss_pred CHHHHHHHHhhcCCchhh-------c----cCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHH
Q 040300 444 HPQFVSDVMKPLLIEQLM-------D----QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512 (605)
Q Consensus 444 ~~~~~~~~l~~l~l~~~~-------~----~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 512 (605)
..+.+.++++..++.++. | .....||||||||++|||||+++|+|||||||||+||.++...+.+.|.+
T Consensus 1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 344566677776665433 2 23457999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEecCHHHHHhhcCEEEEEeC----CcceeeecCChhhhhc
Q 040300 513 FILHAKKTAFVVEHDFIMATYLADRVIVYEG----QPSVDCVANAPQSLLT 559 (605)
Q Consensus 513 l~~~~g~tiivvsHD~~~~~~~adrviv~~g----~~~~~~~~~~p~~~~~ 559 (605)
+....++|+|+|+|.+..+.. ||+|+||++ +..+ ...|+.++++.
T Consensus 1404 ~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv-~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1404 IKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFV-QAHGTHEELLS 1452 (1466)
T ss_pred HhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEE-EEecCHHHHHh
Confidence 742348999999999998864 999999986 3322 35688888875
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=497.70 Aligned_cols=199 Identities=19% Similarity=0.280 Sum_probs=160.0
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|+. ...++++++|++.+| |.+||+|++|||||||+++|.|+++|++|+|. +.++. +.+++|+
T Consensus 1241 sf~Y~~~~~~vL~~isl~I~~G-----ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iV 1315 (1495)
T PLN03232 1241 HLRYRPGLPPVLHGLSFFVSPS-----EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSII 1315 (1495)
T ss_pred EEEECCCCCcccccceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEE
Confidence 566743 234678888888887 79999999999999999999999999999985 33222 2369999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||++. .|..|+++|+... .. .+.+.+.++++..++.+... ....+||||||||++|||||+++|+
T Consensus 1316 pQdp~-LF~gTIr~NL~~~--~~-~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ 1391 (1495)
T PLN03232 1316 PQSPV-LFSGTVRFNIDPF--SE-HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSK 1391 (1495)
T ss_pred CCCCe-eeCccHHHHcCCC--CC-CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 99975 4788999998532 11 23345666777766654432 3346899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||||||||+||.++...+.+.|++.. .++|+|+|+|.++.+.. ||||+||+++.. ...|+|++++...
T Consensus 1392 ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~i--vE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1392 ILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTIID-CDKILVLSSGQV--LEYDSPQELLSRD 1460 (1495)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHh-CCEEEEEECCEE--EEECCHHHHHhCC
Confidence 999999999999999999999999863 47999999999999986 999999996554 4569999998754
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=494.08 Aligned_cols=198 Identities=18% Similarity=0.277 Sum_probs=160.7
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|+.. ..++++++|++.+| |.+||+|++|||||||+++|.|+++|++|+|. +.++. +.+++|+
T Consensus 1244 sf~Y~~~~~~VL~~is~~I~~G-----ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiV 1318 (1622)
T PLN03130 1244 VLRYRPELPPVLHGLSFEISPS-----EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGII 1318 (1622)
T ss_pred EEEeCCCCCceecceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEE
Confidence 5667532 34688888888888 79999999999999999999999999999985 33322 2469999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||++. .|..|+++|+... .. .+.+.+.++++..++.+... ....+||||||||++|||||+++|+
T Consensus 1319 pQdp~-LF~GTIreNLd~~--~~-~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130 1319 PQAPV-LFSGTVRFNLDPF--NE-HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred CCCCc-cccccHHHHhCcC--CC-CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99975 4788999998532 11 23445667777766654432 2345899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||||||||+||.++...+.+.|++.. .++|+|+|+|.++.+.. ||||+||+++.. ...|+|++++..
T Consensus 1395 ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~-~DrIlVLd~G~I--vE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1395 ILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILVLDAGRV--VEFDTPENLLSN 1462 (1622)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHHHh-CCEEEEEECCEE--EEeCCHHHHHhC
Confidence 999999999999999999999999864 47999999999999986 999999997554 456999999864
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=492.43 Aligned_cols=185 Identities=21% Similarity=0.264 Sum_probs=149.0
Q ss_pred eceeecCeEEEEEecCCCCHHHHHHHHHcCCC---CCeeeee--ccccC---cceeEeecCcCCCCCcCcHHHHHHhhh-
Q 040300 368 EGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK---PDSVEDS--DVEIP---EFNVSYKPQKISPKFQSTVRHLLHQKI- 438 (605)
Q Consensus 368 ~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~---p~~G~i~--~~~~~---~~~i~y~~q~~~~~~~~tv~~~~~~~~- 438 (605)
++++.+||+++|+||||||||||+++|+|+.+ |++|++. +.... ...++|++|+....+..||+|++....
T Consensus 783 s~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~ 862 (1394)
T TIGR00956 783 DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAY 862 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHH
Confidence 45566678999999999999999999999997 6889875 22221 235899999865566789999875421
Q ss_pred -cc--CCCC---HHHHHHHHhhcCCchhhccCcC----cCChhHHHHHHHHHHHccCCC-EEEEecCCCCCCHHHHHHHH
Q 040300 439 -RD--SYTH---PQFVSDVMKPLLIEQLMDQEVV----NLSGGELQRVALCLCLGKPAD-IYLIDEPSAYLDSEQRIVAA 507 (605)
Q Consensus 439 -~~--~~~~---~~~~~~~l~~l~l~~~~~~~~~----~LSGGe~QRvaiA~aL~~~p~-lllLDEPt~~LD~~~~~~l~ 507 (605)
+. .... .+.++++++.+++.+.+|+.++ .|||||||||+||++|+.+|+ ||||||||+|||+.++..+.
T Consensus 863 l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~ 942 (1394)
T TIGR00956 863 LRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942 (1394)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHH
Confidence 11 1111 2356789999999999999887 799999999999999999997 99999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEecCHHH-HHhhcCEEEEEeCC-cceeeecCChh
Q 040300 508 KVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVYEGQ-PSVDCVANAPQ 555 (605)
Q Consensus 508 ~~l~~l~~~~g~tiivvsHD~~~-~~~~adrviv~~g~-~~~~~~~~~p~ 555 (605)
++|+++.+ .|.|||+++||+.. +...+||+++++.+ .. ...|++.
T Consensus 943 ~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i--v~~G~~~ 989 (1394)
T TIGR00956 943 KLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQT--VYFGDLG 989 (1394)
T ss_pred HHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEE--EEECCcc
Confidence 99999864 58999999999986 44679999999843 32 3445553
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-50 Score=491.85 Aligned_cols=198 Identities=21% Similarity=0.251 Sum_probs=159.1
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|+.. ..++++++|++.+| |.+||+|++|||||||+++|.|+++|++|+|. +.++. +.+++|+
T Consensus 1291 sf~Y~~~~~~vL~~is~~I~~G-----ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iV 1365 (1522)
T TIGR00957 1291 CLRYREDLDLVLRHINVTIHGG-----EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITII 1365 (1522)
T ss_pred EEEeCCCCcccccceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEE
Confidence 5667542 24678888888888 79999999999999999999999999999985 33322 2369999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhh-------cc----CcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLM-------DQ----EVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~----~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||++. .|..|+++|+... .. .+.+.+.++++..++.+.. |. ...+||||||||++|||||+++|+
T Consensus 1366 pQdp~-LF~gTIr~NLdp~--~~-~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1441 (1522)
T TIGR00957 1366 PQDPV-LFSGSLRMNLDPF--SQ-YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTK 1441 (1522)
T ss_pred CCCCc-ccCccHHHHcCcc--cC-CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 99975 4788999998421 11 2334556677776665432 33 335799999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||||||||+||.++...+.+.|++.. .+.|+|+|+|+++.+.. ||||+||+++.. ...|+|++++..
T Consensus 1442 ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlVld~G~I--vE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1442 ILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMD-YTRVIVLDKGEV--AEFGAPSNLLQQ 1509 (1522)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999999999863 47999999999999886 899999997554 456999998865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=483.86 Aligned_cols=198 Identities=18% Similarity=0.221 Sum_probs=159.4
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|++. ..++++++|++.+| |.+||+|++|||||||+++|.|+++|++|+|. +.++. +..|+|+
T Consensus 1315 sf~Y~~~~~~vL~~vsf~I~~G-----ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iV 1389 (1560)
T PTZ00243 1315 QMRYREGLPLVLRGVSFRIAPR-----EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMI 1389 (1560)
T ss_pred EEEeCCCCCceeecceEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEE
Confidence 5566543 23678888888777 79999999999999999999999999999985 33322 2369999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhh-------cc----CcCcCChhHHHHHHHHHHHccC-C
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLM-------DQ----EVVNLSGGELQRVALCLCLGKP-A 486 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~----~~~~LSGGe~QRvaiA~aL~~~-p 486 (605)
||++. .|..|+++|+... . ..+.+.+.++++..++.+.. |. .-.+||||||||++|||||+++ |
T Consensus 1390 pQdp~-LF~gTIreNIdp~--~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~ 1465 (1560)
T PTZ00243 1390 PQDPV-LFDGTVRQNVDPF--L-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGS 1465 (1560)
T ss_pred CCCCc-cccccHHHHhCcc--c-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99975 5788999998431 1 12345677788887776543 22 3357999999999999999995 8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||||+||.++...+.+.|++.. .+.|+|+|+|.++.+.. ||||+||+++.. ...|+|++++..
T Consensus 1466 ~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~V--vE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1466 GFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQ-YDKIIVMDHGAV--AEMGSPRELVMN 1534 (1560)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHh-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 9999999999999999999999999863 37999999999998875 999999997554 456999999863
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-51 Score=418.36 Aligned_cols=335 Identities=21% Similarity=0.306 Sum_probs=246.1
Q ss_pred HHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEE
Q 040300 193 ERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271 (605)
Q Consensus 193 ~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tviv 271 (605)
...+++.+|.-||++ ++-+|+...+|||||.||.|||||..+|-+|+|||||+|||..+..|+-..|.- +.+|+++
T Consensus 388 AEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQg---WkKTLLI 464 (807)
T KOG0066|consen 388 AEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQG---WKKTLLI 464 (807)
T ss_pred chhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhh---hhheeEE
Confidence 356788899999997 578999999999999999999999999999999999999999988777766655 4679999
Q ss_pred EecCHhHHHhhcCEEEEEeCcc-----ccccccccchh--hHHHHHhh---------------------------h----
Q 040300 272 VEHDLSVLDYLSDFICCLYGKP-----GAYGVVTLPFS--VREGINIF---------------------------L---- 313 (605)
Q Consensus 272 vsHdl~~l~~~~D~i~vl~g~~-----~~~g~~~~~~~--~r~~i~~~---------------------------l---- 313 (605)
||||-.|++.+|..|+.|+... |.|..+...|. .++.+..| +
T Consensus 465 VSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS~KqAEkq~Ke~ltrKq 544 (807)
T KOG0066|consen 465 VSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQ 544 (807)
T ss_pred EecccchHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999996543 34433221111 01111111 0
Q ss_pred --cCCCC---Ccc-------cccccccccccccCCC--cchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEE
Q 040300 314 --AGFVP---TEN-------LRFRDESLTFRVAETP--QESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVM 379 (605)
Q Consensus 314 --~g~~~---~e~-------~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i 379 (605)
.+... .+. .|..+.+..|.++++. .+.+.-...+ .|.|++..+.+.+++|-+.-- .+++|
T Consensus 545 ~K~~~Knq~dded~gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~V-tFgy~gqkpLFkkldFGiDmd-----SRiaI 618 (807)
T KOG0066|consen 545 KKGGKKNQNDDEDAGAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDV-TFGYPGQKPLFKKLDFGIDMD-----SRIAI 618 (807)
T ss_pred HhccccccCccccccCHHHHhCchheEEEEecCCCCCCCCCeeecccc-cccCCCCCchhhccccccccc-----ceeEE
Confidence 00000 000 0122334445554432 1212223334 788877666667777766544 47999
Q ss_pred EecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCC--CcCcHHHHHHhhhccCCCCHHHHHHHHhhcCC
Q 040300 380 LGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPK--FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLI 457 (605)
Q Consensus 380 ~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~--~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l 457 (605)
+||||.||||||++|.|-+.|..|+.. ...+++||+..|+.... ...|..+++...+. ...+.+...|-.+||
T Consensus 619 VGPNGVGKSTlLkLL~Gkl~P~~GE~R--KnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN---lpyq~ARK~LG~fGL 693 (807)
T KOG0066|consen 619 VGPNGVGKSTLLKLLIGKLDPNDGELR--KNHRLRIGWFDQHANEALNGEETPVEYLQRKFN---LPYQEARKQLGTFGL 693 (807)
T ss_pred ECCCCccHHHHHHHHhcCCCCCcchhh--ccceeeeechhhhhHHhhccccCHHHHHHHhcC---CChHHHHHHhhhhhh
Confidence 999999999999999999999999852 23456899999875422 23466666643321 234567788899999
Q ss_pred chhhc-cCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcC
Q 040300 458 EQLMD-QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLAD 536 (605)
Q Consensus 458 ~~~~~-~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~ad 536 (605)
..-.+ -.+..|||||+-||++|-.-+..||+|||||||++||+++...+.+.|+++ ...|||||||-.++...--
T Consensus 694 ~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRLi~eT~C 769 (807)
T KOG0066|consen 694 ASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERLIVETDC 769 (807)
T ss_pred hhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccceeeecCc
Confidence 74433 467899999999999999999999999999999999999999999999886 6789999999998887666
Q ss_pred EEEEEeCCc
Q 040300 537 RVIVYEGQP 545 (605)
Q Consensus 537 rviv~~g~~ 545 (605)
..||++++.
T Consensus 770 ~LwVvE~Q~ 778 (807)
T KOG0066|consen 770 NLWVVENQG 778 (807)
T ss_pred eEEEEccCC
Confidence 788887653
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-49 Score=475.90 Aligned_cols=175 Identities=23% Similarity=0.282 Sum_probs=142.8
Q ss_pred eeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC--Ceeeee--ccccC----cceeEeecCcCCCCCcCcHHHHHHhhh
Q 040300 367 VEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP--DSVEDS--DVEIP----EFNVSYKPQKISPKFQSTVRHLLHQKI 438 (605)
Q Consensus 367 ~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p--~~G~i~--~~~~~----~~~i~y~~q~~~~~~~~tv~~~~~~~~ 438 (605)
.+|.+.+||+++|+|||||||||||++|+|..++ .+|++. +.... ...++|++|+.......||+|++....
T Consensus 899 vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a 978 (1470)
T PLN03140 899 VTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSA 978 (1470)
T ss_pred cEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHH
Confidence 3455666789999999999999999999999764 568764 22211 234899999866556689999875321
Q ss_pred --c--cCCCC---HHHHHHHHhhcCCchhhccCc-----CcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040300 439 --R--DSYTH---PQFVSDVMKPLLIEQLMDQEV-----VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVA 506 (605)
Q Consensus 439 --~--~~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l 506 (605)
+ ..... ...++++++.++|.+..++.+ ..|||||||||+||++|+.+|+||+|||||+|||+.++..+
T Consensus 979 ~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v 1058 (1470)
T PLN03140 979 FLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1058 (1470)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Confidence 1 11111 235788999999999888886 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecCHH-HHHhhcCEEEEEe
Q 040300 507 AKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVYE 542 (605)
Q Consensus 507 ~~~l~~l~~~~g~tiivvsHD~~-~~~~~adrviv~~ 542 (605)
+++|+++.+ .|.|||+++|+.. .+..++|++++|+
T Consensus 1059 ~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1059 MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred HHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence 999999865 4899999999997 4677899999997
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-47 Score=465.46 Aligned_cols=181 Identities=26% Similarity=0.288 Sum_probs=146.7
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeecCcCCCCCcCcHHHHHHhhhcc
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKPQKISPKFQSTVRHLLHQKIRD 440 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~q~~~~~~~~tv~~~~~~~~~~ 440 (605)
++++||.+||+|++|||||||+++|+|++. ++|+|. +.++. +.+++|+||++. .|..|+++|+... .
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~-LF~GTIR~NLdp~--~ 1316 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVF-IFSGTFRKNLDPY--E 1316 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCc-cCccCHHHHhCcc--c
Confidence 444558999999999999999999999996 789875 33322 236999999975 4788999998421 1
Q ss_pred CCCCHHHHHHHHhhcCCchhhccC-----------cCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040300 441 SYTHPQFVSDVMKPLLIEQLMDQE-----------VVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509 (605)
Q Consensus 441 ~~~~~~~~~~~l~~l~l~~~~~~~-----------~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~ 509 (605)
..+.+.+.++++..++.+...+. -.+||||||||++|||||+++|+|||||||||+||.++...+.+.
T Consensus 1317 -~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~ 1395 (1490)
T TIGR01271 1317 -QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT 1395 (1490)
T ss_pred -CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 12345677788888876543332 237999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 510 IKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 510 l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|++.. .++|||+|+|.++.+.. ||||+||+++.. ...|+|.+++..
T Consensus 1396 L~~~~--~~~TvI~IaHRl~ti~~-~DrIlvL~~G~i--vE~g~p~~Ll~~ 1441 (1490)
T TIGR01271 1396 LKQSF--SNCTVILSEHRVEALLE-CQQFLVIEGSSV--KQYDSIQKLLNE 1441 (1490)
T ss_pred HHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEE--EEeCCHHHHHcC
Confidence 99863 47999999999998876 999999996554 356999999864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=381.99 Aligned_cols=231 Identities=30% Similarity=0.446 Sum_probs=198.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||||+|+|+++|.+|+|. +..+. ...++|+|
T Consensus 9 s~~y~~-~~il~~ls~~i~~G-----~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vp 82 (258)
T COG1120 9 SFGYGG-KPILDDLSFSIPKG-----EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVP 82 (258)
T ss_pred EEEECC-eeEEecceEEecCC-----cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEec
Confidence 888985 45789999999998 68999999999999999999999999999986 22221 23699999
Q ss_pred CcCCCCCcCcHHHHHHhh-hc--cCC-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQK-IR--DSY-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~-~~--~~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|.....+..||+|.+... .+ ..+ .+.+.+.++|+.+++.++.++++.+|||||||||.|||||+++|++|||
T Consensus 83 Q~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLL 162 (258)
T COG1120 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLL 162 (258)
T ss_pred cCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEe
Confidence 998777889999987542 11 112 1334678889999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc-cceecce
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL-FLSHLDI 570 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~-~l~~~~~ 570 (605)
||||++||+.++.+++++++++.+++|.|||+|+||+++|.++||++++|+++.. .+.|+|+++++..+. -..++++
T Consensus 163 DEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i--~a~G~p~evlT~e~l~~Vygv~~ 240 (258)
T COG1120 163 DEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI--VAQGTPEEVLTEENLREVYGVDA 240 (258)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE--EeecCcchhcCHHHHHHHhCCce
Confidence 9999999999999999999999888899999999999999999999999997543 578999999998652 3457888
Q ss_pred EEEecCCCCcceeecCC
Q 040300 571 TFRRDPTNFRPRINKLD 587 (605)
Q Consensus 571 ~~~~~~~~~rpr~n~~~ 587 (605)
....+|.+++|.+.+..
T Consensus 241 ~~~~~~~~~~p~~i~~~ 257 (258)
T COG1120 241 DVIEDPDSGKPVVIPLG 257 (258)
T ss_pred EEEEcCCCCceEEecCC
Confidence 88889988888887653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=356.10 Aligned_cols=204 Identities=24% Similarity=0.320 Sum_probs=174.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
..+|++. .++++++|++.+| |+++|+||+|||||||||+|+|+.+|++|++. +.... +.++|++
T Consensus 9 ~K~fg~~-~VLkgi~l~v~~G-----evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmV 82 (240)
T COG1126 9 SKSFGDK-EVLKGISLSVEKG-----EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMV 82 (240)
T ss_pred eEEeCCe-EEecCcceeEcCC-----CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCee
Confidence 6778764 4799999999998 78999999999999999999999999999986 21111 2369999
Q ss_pred cCcCCCCCcCcHHHHHHhhh---ccC--CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKISPKFQSTVRHLLHQKI---RDS--YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~---~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|+...+..+||.+|+.... ... ......+.++|+.+||.+..+.+|.+|||||||||||||||+++|+++|+||
T Consensus 83 FQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE 162 (240)
T COG1126 83 FQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162 (240)
T ss_pred cccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC
Confidence 99998888899999875421 111 1123567789999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||+|||+...+++++++++++ .|.|+++|||+|.||..+||||+.|+++.. ...++|++++...
T Consensus 163 PTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~FAr~VadrviFmd~G~i--ie~g~p~~~f~~p 227 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMGFAREVADRVIFMDQGKI--IEEGPPEEFFDNP 227 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechhHHHHHhhheEEEeeCCEE--EEecCHHHHhcCC
Confidence 9999999999999999999965 599999999999999999999999997643 3557999988763
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=368.14 Aligned_cols=204 Identities=28% Similarity=0.449 Sum_probs=177.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----CcceeEeecCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----PEFNVSYKPQKI 422 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~~~~i~y~~q~~ 422 (605)
++.|.+. .++++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +... +..+|||+||..
T Consensus 11 ~v~y~~~-~vl~~i~l~v~~G-----~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~ 84 (254)
T COG1121 11 TVSYGNR-PVLEDISLSVEKG-----EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKS 84 (254)
T ss_pred EEEECCE-eeeeccEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCccc
Confidence 8888865 5899999999998 68999999999999999999999999999986 2211 235799999975
Q ss_pred --CCCCcCcHHHHHHhhhcc--C-C-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 423 --SPKFQSTVRHLLHQKIRD--S-Y-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 423 --~~~~~~tv~~~~~~~~~~--~-~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
...|+.||++++...... . + .+.+.+.++|+.+|+.++.++++++|||||+|||.|||||+++|++||||
T Consensus 85 ~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD 164 (254)
T COG1121 85 SVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD 164 (254)
T ss_pred ccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec
Confidence 345788999988653111 1 1 23467899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMN 562 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~ 562 (605)
|||+|+|+.++..++++|+++.++ |+||++||||+..+..++|+|+.+..+. .+.|+|+++++..+
T Consensus 165 EP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln~~~---~~~G~~~~~~~~~~ 230 (254)
T COG1121 165 EPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRHL---IASGPPEEVLTEEN 230 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEcCee---EeccChhhccCHHH
Confidence 999999999999999999999776 9999999999999999999999998765 57899999988744
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=353.23 Aligned_cols=192 Identities=29% Similarity=0.373 Sum_probs=170.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc--cCcceeEeecCcCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE--IPEFNVSYKPQKISP 424 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~--~~~~~i~y~~q~~~~ 424 (605)
++.|+. ..++++++|++.+| |+++|+||+|||||||||+|+|+.+|++|++. +.. -+...++|++|+...
T Consensus 10 ~~~f~~-~~vl~~i~L~v~~G-----EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~L 83 (248)
T COG1116 10 SKSFGG-VEVLEDINLSVEKG-----EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDAL 83 (248)
T ss_pred EEEeCc-eEEeccceeEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcc
Confidence 667776 56899999999998 68999999999999999999999999999975 222 245579999999888
Q ss_pred CCcCcHHHHHHhhhccC----CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 425 KFQSTVRHLLHQKIRDS----YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
.+..||.+|+....... ......+.++++.+||.++.+++|.+|||||||||||||||+.+|++||||||+++||.
T Consensus 84 lPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDa 163 (248)
T COG1116 84 LPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDA 163 (248)
T ss_pred cchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhH
Confidence 77889999986533221 11234688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
-+|..+.+.|.++.++.++||++||||+++|.++||||++|.++|+
T Consensus 164 lTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~ 209 (248)
T COG1116 164 LTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPG 209 (248)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCc
Confidence 9999999999999998899999999999999999999999998774
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=363.91 Aligned_cols=254 Identities=69% Similarity=1.188 Sum_probs=210.7
Q ss_pred ccCCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH
Q 040300 78 DLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT 157 (605)
Q Consensus 78 ~~~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~ 157 (605)
+++.+++|+|+.+...+++++.+.+||+++|+|+||||||||+|+|+|+++|+.|++...+.+......+.|.++..+..
T Consensus 1 ~~~~~~~~~y~~~~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 1 ELEDEPVHRYGPNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred CcccCcceeecCcchhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 35678999998765578888878999999999999999999999999999999999964444443334466666554432
Q ss_pred HHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCE
Q 040300 158 RILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEI 237 (605)
Q Consensus 158 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~v 237 (605)
..........+.+|+....+..+.+++.+.+.....+..+.++++.+||.+..++.+.+|||||+||++||+||+.+|++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i 160 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF 160 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 22211222334467766666544455554444444556788999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCC
Q 040300 238 YMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFV 317 (605)
Q Consensus 238 lllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~ 317 (605)
+||||||++||+..+..+.++|+++.++++|||+||||++++..+||+|++|+|+++++|++..|.++++++|.|.++++
T Consensus 161 lllDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (255)
T cd03236 161 YFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGEPGAYGVVTLPKSVREGINEFLDGYL 240 (255)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCCCCcceeeecCccHHHHHHHHHhccC
Confidence 99999999999999999999999998778999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccc
Q 040300 318 PTENLRFRDESLTF 331 (605)
Q Consensus 318 ~~e~~~~r~~~~~~ 331 (605)
|.++++++..+..|
T Consensus 241 ~~~~~~~~~~~~~~ 254 (255)
T cd03236 241 PTENMRFREESIEF 254 (255)
T ss_pred CccceeecccccCc
Confidence 99999998877654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=403.72 Aligned_cols=336 Identities=24% Similarity=0.312 Sum_probs=224.9
Q ss_pred HHHHHHHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEE
Q 040300 195 DMKADLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271 (605)
Q Consensus 195 ~~~~~~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tviv 271 (605)
.++ ++++.+||.++ ++|++.+|||||+|||+||++|+.+| ++|||||||++||+..+..+.++|++|++.|.|||+
T Consensus 468 ~rl-~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIv 546 (943)
T PRK00349 468 ERL-KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIV 546 (943)
T ss_pred HHH-HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 444 37888999877 89999999999999999999999997 999999999999999999999999999888999999
Q ss_pred EecCHhHHHhhcCEEEEEeCccccc-cccccchhhHHH-------HHhhhcCCCCCcccccccccccccccCCCcchhhh
Q 040300 272 VEHDLSVLDYLSDFICCLYGKPGAY-GVVTLPFSVREG-------INIFLAGFVPTENLRFRDESLTFRVAETPQESAEE 343 (605)
Q Consensus 272 vsHdl~~l~~~~D~i~vl~g~~~~~-g~~~~~~~~r~~-------i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~ 343 (605)
||||++++. .||+|++|..+.|.. |.+....+..+. ...|+.+.... ............
T Consensus 547 VeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~~~~l~~~~l~~~~~~--------~~~~~~~~~~~~---- 613 (943)
T PRK00349 547 VEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMKNPNSLTGQYLSGKKKI--------EVPKERRKGNGK---- 613 (943)
T ss_pred EeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhcChhheeehhhcccccc--------cccccccCCCcc----
Confidence 999999987 599999993222221 111111111111 00111111000 000000000000
Q ss_pred hhhheeeecCCce-eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH---------cCCCCCe------e----
Q 040300 344 IETYARYKYPTMV-KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA---------GLLKPDS------V---- 403 (605)
Q Consensus 344 ~~~~~~~~y~~~~-~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~---------Gl~~p~~------G---- 403 (605)
.+...+.. ..+++++|++..| |+++|+|+||||||||++.+. +...+.. |
T Consensus 614 -----~L~v~~l~~~~L~~isl~Ip~G-----eivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~ 683 (943)
T PRK00349 614 -----FLKLKGARENNLKNVDVEIPLG-----KFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHL 683 (943)
T ss_pred -----eEEecCCccCCcCceEEEEeCC-----CEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCC
Confidence 11111111 1367888888777 789999999999999998763 1110000 0
Q ss_pred --------------------eeecc---------ccC-cceeEeecCcCCCCC---------------------------
Q 040300 404 --------------------EDSDV---------EIP-EFNVSYKPQKISPKF--------------------------- 426 (605)
Q Consensus 404 --------------------~i~~~---------~~~-~~~i~y~~q~~~~~~--------------------------- 426 (605)
+..+. ..+ ....+|.++..++..
T Consensus 684 ~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~ 763 (943)
T PRK00349 684 DKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVP 763 (943)
T ss_pred CceEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCcccc
Confidence 00000 000 001222222211110
Q ss_pred ---------------------------cCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHH
Q 040300 427 ---------------------------QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVAL 478 (605)
Q Consensus 427 ---------------------------~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvai 478 (605)
.+|+.+.+... ..........+.++.++|.. .+++++.+|||||+|||+|
T Consensus 764 C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f--~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~L 841 (943)
T PRK00349 764 CDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFF--EAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKL 841 (943)
T ss_pred CccccCccccccceEEEECCCCHHHHhcCcHHHHHHHH--HhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHH
Confidence 12222222110 00011122356788889986 4799999999999999999
Q ss_pred HHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe------CCcceee
Q 040300 479 CLCLGKPA---DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE------GQPSVDC 549 (605)
Q Consensus 479 A~aL~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~------g~~~~~~ 549 (605)
|++|+.+| ++|||||||+|||+..+..++++|+++.+ .|.|||+||||++++. .||+|++|. ++ ...
T Consensus 842 AraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G--~Iv 917 (943)
T PRK00349 842 AKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGG--EIV 917 (943)
T ss_pred HHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCC--EEE
Confidence 99999999 99999999999999999999999999864 5899999999999986 699999993 32 334
Q ss_pred ecCChhhhhcc
Q 040300 550 VANAPQSLLTG 560 (605)
Q Consensus 550 ~~~~p~~~~~~ 560 (605)
+.++|+++...
T Consensus 918 ~~Gt~~el~~~ 928 (943)
T PRK00349 918 ATGTPEEVAKV 928 (943)
T ss_pred EeCCHHHHHhC
Confidence 67888888754
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=414.07 Aligned_cols=335 Identities=22% Similarity=0.305 Sum_probs=228.2
Q ss_pred HHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCH
Q 040300 200 LCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276 (605)
Q Consensus 200 ~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl 276 (605)
.+..+||.++ ++|.+.+|||||+|||+||+||+.+| ++|||||||++||+..+..+.++|+++++.|.|||+||||+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4557799877 79999999999999999999999999 89999999999999999999999999988899999999999
Q ss_pred hHHHhhcCEEEEEeCccccc-cccccchhhHH-------HHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhhe
Q 040300 277 SVLDYLSDFICCLYGKPGAY-GVVTLPFSVRE-------GINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYA 348 (605)
Q Consensus 277 ~~l~~~~D~i~vl~g~~~~~-g~~~~~~~~r~-------~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 348 (605)
++ ..+||+|++|..+.+.. |.+....+..+ ....|+.+..... .. .. ......
T Consensus 539 ~v-i~~aDrVi~L~pGag~~gG~Iv~~G~~~eil~~~~~l~~~~l~~~~~~~---~~-~~-----~~~~~~--------- 599 (1809)
T PRK00635 539 QM-ISLADRIIDIGPGAGIFGGEVLFNGSPREFLAKSDSLTAKYLRQELTIP---IP-EK-----RTNSLG--------- 599 (1809)
T ss_pred HH-HHhCCEEEEEcCCcccCCCEEEEecCHHHHhhChHHHHHHHhcCccccc---Cc-cc-----ccCCCC---------
Confidence 95 57899999995332211 11111111111 1122222111000 00 00 000000
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHH---------HHHcCCCCCee----ee---------
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIR---------MLAGLLKPDSV----ED--------- 405 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk---------~L~Gl~~p~~G----~i--------- 405 (605)
.+...+. ...+++++|++..| |+++|+|+||||||||++ .|.|...+..+ .+
T Consensus 600 ~L~l~~~~~~~Lk~isl~Ip~G-----eiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQs 674 (1809)
T PRK00635 600 TLTLSKATKHNLKDLTISLPLG-----RLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRD 674 (1809)
T ss_pred eEEEeccccCCccceEEEEcCC-----cEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCC
Confidence 1111111 12478888888887 789999999999999999 56665322100 11
Q ss_pred -----------e--c--cccC--------cceeE-----eecCc--------------------CC--------------
Q 040300 406 -----------S--D--VEIP--------EFNVS-----YKPQK--------------------IS-------------- 423 (605)
Q Consensus 406 -----------~--~--~~~~--------~~~i~-----y~~q~--------------------~~-------------- 423 (605)
. + ..+. ....+ +.++. ..
T Consensus 675 pigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e 754 (1809)
T PRK00635 675 LPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQ 754 (1809)
T ss_pred CCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHH
Confidence 0 0 0000 00000 11110 00
Q ss_pred ----CCCcCcHHHHHHhhhccC---CCC----HHHHHHHHhhcCCchh-hccCcCcCChhHHHHHHHHHHHc---cCCCE
Q 040300 424 ----PKFQSTVRHLLHQKIRDS---YTH----PQFVSDVMKPLLIEQL-MDQEVVNLSGGELQRVALCLCLG---KPADI 488 (605)
Q Consensus 424 ----~~~~~tv~~~~~~~~~~~---~~~----~~~~~~~l~~l~l~~~-~~~~~~~LSGGe~QRvaiA~aL~---~~p~l 488 (605)
.....||.|++....... +.. ...+ ++++.+++.++ +++++.+|||||+|||+||++|+ ++|++
T Consensus 755 ~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~L 833 (1809)
T PRK00635 755 VLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTL 833 (1809)
T ss_pred HHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence 001235666654332211 111 1223 57888999887 89999999999999999999997 69999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe--CC--cceeeecCChhhhhccc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE--GQ--PSVDCVANAPQSLLTGM 561 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~--g~--~~~~~~~~~p~~~~~~~ 561 (605)
|||||||+|||+.++..++++|+++.+ .|.|||+||||++++ .+||++++|. |+ .+.....++|+++...+
T Consensus 834 LILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~~~ 908 (1809)
T PRK00635 834 YVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIHLH 908 (1809)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHhcc
Confidence 999999999999999999999999864 599999999999999 7899999995 21 13345678999987643
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=335.35 Aligned_cols=203 Identities=27% Similarity=0.398 Sum_probs=157.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|+|.|| .++||.+. .|.+++ .+.+||+++|+||||||||||||+|.|+.+|++|+|...
T Consensus 2 mi~i~~l--------~K~fg~~~-VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~---------- 62 (240)
T COG1126 2 MIEIKNL--------SKSFGDKE-VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD---------- 62 (240)
T ss_pred eEEEEee--------eEEeCCeE-EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEEC----------
Confidence 4666664 55888763 577777 578999999999999999999999999999999998522
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhh------hhcCchHHHHHHHHHHhhcCCchhhcccCCCCChH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVG------QVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~------~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG 220 (605)
|..+..-. .+..-.-+..+..|....+|.. +..++- .-..+.+.++++.++|+++||.+..|.+|.+||||
T Consensus 63 -g~~~~~~~-~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGG 140 (240)
T COG1126 63 -GEDVGDKK-DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGG 140 (240)
T ss_pred -CEeccchh-hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcH
Confidence 21110000 0001111222333444444432 111111 01234566788999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 221 e~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||||||||+++|++++||||||.|||+...++.+++++|+++|.|+|+|||++.|+..+||||+.|+++
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G 212 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQG 212 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999754
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=343.55 Aligned_cols=210 Identities=27% Similarity=0.370 Sum_probs=180.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|.+ .+++++++|++..| |+++++||+||||||+||||.++++|++|+|. +..+. +++|||+-
T Consensus 8 sk~y~~-~~av~~v~l~I~~g-----ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYvi 81 (309)
T COG1125 8 SKRYGN-KKAVDDVNLTIEEG-----EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVI 81 (309)
T ss_pred ehhcCC-ceeeeeeeEEecCC-----eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhh
Confidence 667775 45789999999999 67999999999999999999999999999986 22222 34799999
Q ss_pred CcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCc--hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 420 QKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~--~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
|.+...+.+||.+|+..-.. ..+. ....+.++|+.+||+ ++.+++|++|||||||||.+||||+.+|+++|+||
T Consensus 82 QqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDE 161 (309)
T COG1125 82 QQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDE 161 (309)
T ss_pred hhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecC
Confidence 99998889999998753111 1121 235688999999997 48999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc-cccce
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM-NLFLS 566 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~-~~~l~ 566 (605)
|+++|||-+|..+.+.+.++.++.++|||+||||+++|..++|||.+|+++.. ...++|++++... |.|++
T Consensus 162 PFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i--~Q~~~P~~il~~Pan~FV~ 233 (309)
T COG1125 162 PFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEI--VQYDTPDEILANPANDFVE 233 (309)
T ss_pred CccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeE--EEeCCHHHHHhCccHHHHH
Confidence 99999999999999999999988999999999999999999999999996554 4568999998764 67776
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=397.59 Aligned_cols=194 Identities=23% Similarity=0.336 Sum_probs=155.2
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeecCcCCCCC
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKPQKISPKF 426 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~q~~~~~~ 426 (605)
..++++++|++.+| |.+||+|..|||||||+.+|..+..|.+|+|. +.++. +.+++.+||++. .|
T Consensus 1153 p~VLk~is~~I~p~-----eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPv-LF 1226 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPG-----EKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPV-LF 1226 (1381)
T ss_pred cchhcCceEEEcCC-----ceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCc-ee
Confidence 34577888888777 79999999999999999999999999999985 33332 246999999975 58
Q ss_pred cCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchh-----------hccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 427 QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQL-----------MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 427 ~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
.+|+|.|+.-. ..+. .+.+.++|+..++.+. ...--.++|-||||.|+|||||+++.+||+|||.|
T Consensus 1227 sGTvR~NLDPf--~e~s-D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEAT 1303 (1381)
T KOG0054|consen 1227 SGTVRFNLDPF--DEYS-DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEAT 1303 (1381)
T ss_pred cCccccccCcc--cccC-HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccc
Confidence 89999987421 1122 2344455555555432 22334679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL 563 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~ 563 (605)
|++|+++-..+.+.|++-- .+.|||.|-|.++.+.. ||||+||+.+.. ...++|.++++..+-
T Consensus 1304 AsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~TVmd-~DrVlVld~G~v--~EfdsP~~Ll~~~~S 1366 (1381)
T KOG0054|consen 1304 ASVDPETDALIQKTIREEF--KDCTVLTIAHRLNTVMD-SDRVLVLDAGRV--VEFDSPAELLSDKDS 1366 (1381)
T ss_pred ccCChHHHHHHHHHHHHHh--cCCeEEEEeeccchhhh-cCeEEEeeCCeE--eecCChHHHHhCCcc
Confidence 9999999999999999854 47999999999999987 999999996554 467999999987543
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=391.06 Aligned_cols=334 Identities=23% Similarity=0.322 Sum_probs=214.5
Q ss_pred HHHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecC
Q 040300 199 DLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHD 275 (605)
Q Consensus 199 ~~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHd 275 (605)
+.+..+||..+ ++|++.+|||||+||++||++|+.+| ++|||||||++||+..+..+.++|++|.+.|.|||+||||
T Consensus 469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd 548 (924)
T TIGR00630 469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD 548 (924)
T ss_pred HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 34677899876 79999999999999999999999986 8999999999999999999999999998889999999999
Q ss_pred HhHHHhhcCEEEEEeCccccc-cccccchhhHHHHH---hhhcCCCCCcccccccccccccccCCCcchhhhhhhheeee
Q 040300 276 LSVLDYLSDFICCLYGKPGAY-GVVTLPFSVREGIN---IFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYK 351 (605)
Q Consensus 276 l~~l~~~~D~i~vl~g~~~~~-g~~~~~~~~r~~i~---~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (605)
++++. .||+|++|..+.|.. |.+....+..+... .....++.... . .... +...+... . .+.
T Consensus 549 ~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~~~~lt~~~l~~~~-~---~~~~-~~~~~~~~-------~-~l~ 614 (924)
T TIGR00630 549 EETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILANPDSLTGQYLSGKK-K---IEVP-KERRPGNG-------K-FLT 614 (924)
T ss_pred HHHHh-hCCEEEEecccccCCCCEEeeccCHHHHhcCchheeeecccccc-c---cccc-ccccCCCc-------c-eEE
Confidence 99987 899999993222221 11111111111000 00000100000 0 0000 00000000 0 111
Q ss_pred cCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHH-HHH--------c-CCCCC-----ee--------eeec
Q 040300 352 YPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIR-MLA--------G-LLKPD-----SV--------EDSD 407 (605)
Q Consensus 352 y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk-~L~--------G-l~~p~-----~G--------~i~~ 407 (605)
..+. ...+++++|++..| |+++|+|+||||||||++ .|. + ...|. .| .|..
T Consensus 615 l~~~~~~~Lk~vsl~Ip~G-----eiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vdQ 689 (924)
T TIGR00630 615 LKGARENNLKNITVSIPLG-----LFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKVIHIDQ 689 (924)
T ss_pred EEeCccCCcCceEEEEeCC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCceEEEec
Confidence 1111 12477888888887 789999999999999997 332 1 11111 01 0000
Q ss_pred ccc-------------------------Cc-ceeEeecCcCCC-------------------------------------
Q 040300 408 VEI-------------------------PE-FNVSYKPQKISP------------------------------------- 424 (605)
Q Consensus 408 ~~~-------------------------~~-~~i~y~~q~~~~------------------------------------- 424 (605)
..+ +. ...+|-+...++
T Consensus 690 ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R 769 (924)
T TIGR00630 690 SPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKR 769 (924)
T ss_pred CCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCCcCCce
Confidence 000 00 000010000000
Q ss_pred -----------------CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHHcc--
Q 040300 425 -----------------KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCLGK-- 484 (605)
Q Consensus 425 -----------------~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL~~-- 484 (605)
..++||.+.+... ..........++++.++|.. .+++++.+|||||+|||+||++|+.
T Consensus 770 ~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~--~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~ 847 (924)
T TIGR00630 770 YNRETLEVKYKGKNIADVLDMTVEEAYEFF--EAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRS 847 (924)
T ss_pred eChHHHhceeCCCCHHHHhCCcHHHHHHHH--HhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcC
Confidence 0011111111100 00001112346788889986 4799999999999999999999997
Q ss_pred -CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE------eCCcceeeecCChhhh
Q 040300 485 -PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY------EGQPSVDCVANAPQSL 557 (605)
Q Consensus 485 -~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~------~g~~~~~~~~~~p~~~ 557 (605)
+|++|||||||+|||+..+..+.++|+++.+ .|.|||+||||++++. .||++++| +++. ..+.++|+++
T Consensus 848 ~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~--iv~~G~~~~l 923 (924)
T TIGR00630 848 TGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGT--IVASGTPEEV 923 (924)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEecCCccCCCCE--EEEeCCHHHh
Confidence 5999999999999999999999999999864 5899999999999985 69999999 3332 2456777664
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=356.31 Aligned_cols=210 Identities=29% Similarity=0.422 Sum_probs=181.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
...|++.. ++++++|++.+| |+++|+||||||||||||+|||+.+|++|++. +..+ ..++|++++|+
T Consensus 10 ~K~yg~~~-~l~~i~l~i~~G-----ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~ 83 (338)
T COG3839 10 RKSFGSFE-VLKDVNLDIEDG-----EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQN 83 (338)
T ss_pred EEEcCCce-eeecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCC
Confidence 67787643 688999999988 68999999999999999999999999999986 2222 24679999999
Q ss_pred CCCCCcCcHHHHHHhhhccC----CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS----YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
...++.+||++|+....+.. ....+.+.++.+.|+|++++++.|.+|||||||||||||||+++|+++|||||+|+
T Consensus 84 yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSn 163 (338)
T COG3839 84 YALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSN 163 (338)
T ss_pred ccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhH
Confidence 98888999999986543322 12346788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc-cccce
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM-NLFLS 566 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~-~~~l~ 566 (605)
||...|..+...|+++.++.+.|+|+||||..+|..+||||+||.++.. ...++|.++.... |.|..
T Consensus 164 LDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i--~Q~g~p~ely~~P~n~fVA 231 (338)
T COG3839 164 LDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI--QQVGTPLELYERPANLFVA 231 (338)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCee--eecCChHHHhhCccchhhh
Confidence 9999999999999999888899999999999999999999999995433 4679999998653 55543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=339.80 Aligned_cols=198 Identities=21% Similarity=0.282 Sum_probs=170.9
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeEeecCcCCC
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVSYKPQKISP 424 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~y~~q~~~~ 424 (605)
..+++++|++.+| ||+||+|.+|||||||+|++.++.+|++|++. +.++. +.+|++++|+...
T Consensus 20 ~al~~vsL~I~~G-----eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 20 TALDDVSLEIPKG-----EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred eeeccceEEEcCC-----cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccc
Confidence 4789999999998 79999999999999999999999999999975 22211 2469999999888
Q ss_pred CCcCcHHHHHHhhhccC-C---CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 425 KFQSTVRHLLHQKIRDS-Y---THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~-~---~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
....||.+++.....-. . ...+.+.++++.+||.+..+++|.+|||||||||+|||||+.+|+|||.|||||+|||
T Consensus 95 LssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP 174 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174 (339)
T ss_pred cccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCCh
Confidence 77889999875422111 1 1235688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
++...++++|+++.++.|.||++|||.|+.+..+||||.||+.+..+ ..|+..+++...
T Consensus 175 ~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lv--E~G~v~~vF~~P 233 (339)
T COG1135 175 ETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLV--EEGTVSEVFANP 233 (339)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEE--EeccHHHhhcCc
Confidence 99999999999999999999999999999999999999999966543 457777776643
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=340.41 Aligned_cols=206 Identities=25% Similarity=0.352 Sum_probs=177.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cc---c-----cCcceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DV---E-----IPEFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~---~-----~~~~~i~y~ 418 (605)
+..|+.. .++++++|++.+| |.++++||||||||||||+|||++.|++|.|. +. + ....+|||+
T Consensus 9 ~~~~~~~-~a~~di~l~i~~G-----e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 9 KKRFGAF-GALDDISLDIKSG-----ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred hhhcccc-cccccceeeecCC-----cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEE
Confidence 4455553 3577999999988 68999999999999999999999999999985 22 1 124579999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccC------CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDS------YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~------~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
+|+....+.+||.+|+....+-. ......+.++|+.+.|+++.+++|.+|||||+|||||||||+.+|++||||
T Consensus 83 FQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLD 162 (345)
T COG1118 83 FQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 162 (345)
T ss_pred EechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeec
Confidence 99988778899999986543211 123456889999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMN 562 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~ 562 (605)
||+++||..-|.++.+-|+++..+.|.|.++||||.+++..+||||++|+++.+ ...++|.++++..|
T Consensus 163 EPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~I--eqvg~p~ev~~~P~ 230 (345)
T COG1118 163 EPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRI--EQVGPPDEVYDHPA 230 (345)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCee--eeeCCHHHHhcCCC
Confidence 999999999999999999999888899999999999999999999999996554 35699999988764
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=339.05 Aligned_cols=205 Identities=28% Similarity=0.430 Sum_probs=158.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.| ++++|+.. -.|++++ .+.+|++++|+||||||||||+|+|.|+++|..|++...
T Consensus 4 ~i~v~n--------l~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~---------- 64 (254)
T COG1121 4 MIEVEN--------LTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIF---------- 64 (254)
T ss_pred EEEEee--------eEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEc----------
Confidence 466666 45678754 3677777 468999999999999999999999999999999998521
Q ss_pred ccchhhhhHHHHHHHHHHHhhccccc---ccchhhhhchhh-------hhcC--chHHHHHHHHHHhhcCCchhhcccCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYV---DHIPKAVQGNVG-------QVLD--QKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~---~~~~~~~~~~v~-------~~l~--~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
|...... ....++++.||.. ..+|..+...|. .++. .+.+++.++++|+.+|+.++.+|++.
T Consensus 65 -g~~~~~~-----~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~ 138 (254)
T COG1121 65 -GKPVRKR-----RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG 138 (254)
T ss_pred -ccccccc-----ccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc
Confidence 1110000 0012234445533 122322222111 0111 23457889999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcccc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGA 295 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~ 295 (605)
+|||||+|||.|||||+++|++|+|||||+++|+.++..++++|++|+++|+||++||||+..+...+|+|++|.+....
T Consensus 139 ~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~ 218 (254)
T COG1121 139 ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA 218 (254)
T ss_pred ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEe
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999876655
Q ss_pred ccc
Q 040300 296 YGV 298 (605)
Q Consensus 296 ~g~ 298 (605)
+|.
T Consensus 219 ~G~ 221 (254)
T COG1121 219 SGP 221 (254)
T ss_pred ccC
Confidence 553
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=336.03 Aligned_cols=206 Identities=28% Similarity=0.457 Sum_probs=174.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+|.|++....+++++|++.+| |+++|+|+||||||||+++|+|+++|++|.+. +.... ..++||+
T Consensus 10 ~~~y~~~~~~l~~v~~~i~~G-----e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~V 84 (235)
T COG1122 10 SFRYPGRKAALKDVSLEIEKG-----ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLV 84 (235)
T ss_pred EEEcCCCceeeeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEE
Confidence 788877656789999999988 68999999999999999999999999999974 22111 3469999
Q ss_pred cCcCCCC-CcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKISPK-FQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~~~-~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|++... +..||.+.+....... .. ....+.++++.+++.+++++++.+|||||+||||||.+|+++|++|||||
T Consensus 85 fQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDE 164 (235)
T COG1122 85 FQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDE 164 (235)
T ss_pred EECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcC
Confidence 9997543 5678988765432221 11 23567889999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||+||+.++..++++++++..+.|+|+|++|||++++..+|||+++|+.+.. ...|+|.++++..
T Consensus 165 Pta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i--~~~g~p~~i~~~~ 230 (235)
T COG1122 165 PTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI--LADGDPAEIFNDA 230 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEE--eecCCHHHHhhhh
Confidence 99999999999999999999877689999999999999999999999996543 5678899888763
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=328.42 Aligned_cols=183 Identities=26% Similarity=0.365 Sum_probs=157.1
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----------CcceeEeecCcCC
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----------PEFNVSYKPQKIS 423 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----------~~~~i~y~~q~~~ 423 (605)
.++++++|++.+| |+++|+||+||||||||++|.|+.+|++|.+. +.+. ....|||++|+..
T Consensus 19 ~~L~~v~l~i~~G-----e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 19 EALKDVNLEIEAG-----EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred EecccceEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 4688999999988 68999999999999999999999999999864 2211 1235999999988
Q ss_pred CCCcCcHHHHHHhhh--ccCC--CCHHHHHHHHhhcCCchhhc-cCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 424 PKFQSTVRHLLHQKI--RDSY--THPQFVSDVMKPLLIEQLMD-QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~--~~~~--~~~~~~~~~l~~l~l~~~~~-~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
....+||.|++.... .... .....+.++++.+|+.+..+ ++|.+|||||||||||||||+.+|+++|.||||.+|
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnL 173 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNL 173 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccC
Confidence 888899999976421 1111 12456778999999997666 889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|.++...++++++++.++.|+|+|+||||...+. +|||++.+.++.
T Consensus 174 D~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~ 219 (226)
T COG1136 174 DSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGK 219 (226)
T ss_pred ChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCe
Confidence 9999999999999998888999999999999887 699999998643
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=352.42 Aligned_cols=205 Identities=25% Similarity=0.312 Sum_probs=179.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+..|++ ..++++++|++.+| |+++|+||||||||||||+|||+..|++|+|. +..+ .++.|++++|+
T Consensus 12 ~k~yg~-~~av~~isl~i~~G-----ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~ 85 (352)
T COG3842 12 SKSFGD-FTAVDDISLDIKKG-----EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQS 85 (352)
T ss_pred eeecCC-eeEEecceeeecCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecC
Confidence 677874 45789999999998 68999999999999999999999999999885 2222 24679999999
Q ss_pred CCCCCcCcHHHHHHhhhccC--CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS--YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~--~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
...++.+||.+|+....+.. .. ....+.++++.++++++.+++|.+|||||||||||||||+.+|++||||||.+
T Consensus 86 YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlS 165 (352)
T COG3842 86 YALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLS 165 (352)
T ss_pred cccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCccc
Confidence 88888899999986544411 11 23478899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+||.+-|.++..-|+++.++.|.|.|+||||.++|..+||||+||+.+.+ ...++|+++....
T Consensus 166 aLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I--~Q~gtP~eiY~~P 228 (352)
T COG3842 166 ALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRI--EQVGTPEEIYERP 228 (352)
T ss_pred chhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCce--eecCCHHHHhhCc
Confidence 99999999999999999988999999999999999999999999997654 4569999998765
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=325.90 Aligned_cols=210 Identities=25% Similarity=0.316 Sum_probs=178.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
.++|++. ..+++++|++.+| |+++|+||+|||||||+|+|.|+++|++|+|. +.+++ ..++|
T Consensus 15 ~~~fG~~-~Ild~v~l~V~~G-----ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~G 88 (263)
T COG1127 15 TKSFGDR-VILDGVDLDVPRG-----EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMG 88 (263)
T ss_pred eeecCCE-EEecCceeeecCC-----cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhee
Confidence 7778764 4799999999998 68999999999999999999999999999986 22222 23599
Q ss_pred eecCcCCCCCcCcHHHHHHhhhccCC-CCH----HHHHHHHhhcCCchh-hccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRDSY-THP----QFVSDVMKPLLIEQL-MDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~~~-~~~----~~~~~~l~~l~l~~~-~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
+++|.-..+..+||+||+....+... ... ..+..-++.+||... .+++|++||||+++|||||||++.+|+|++
T Consensus 89 vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~ 168 (263)
T COG1127 89 VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168 (263)
T ss_pred EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEE
Confidence 99999877778899999865333221 112 334556788999976 999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccccce
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLS 566 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l~ 566 (605)
+||||+||||.+...+.++|+++.+.-|.|+++||||++.+..+|||++++.++.. .+.|+|+++.+..+.+++
T Consensus 169 ~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv--~~~Gt~~el~~sd~P~v~ 242 (263)
T COG1127 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV--IAEGTPEELLASDDPWVR 242 (263)
T ss_pred ecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE--EEeCCHHHHHhCCCHHHH
Confidence 99999999999999999999999888899999999999999999999999986553 578999999998765554
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=324.42 Aligned_cols=205 Identities=23% Similarity=0.348 Sum_probs=168.7
Q ss_pred eeecCCce---eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------ccee
Q 040300 349 RYKYPTMV---KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNV 415 (605)
Q Consensus 349 ~~~y~~~~---~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i 415 (605)
++.|+... ..+++++|++.+| |++||+|++|||||||.|+|+|+.+|++|+|. +.... ...|
T Consensus 10 ~~~y~~~~~~~~~l~~VS~~i~~G-----e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~V 84 (252)
T COG1124 10 SIVYGGGKFAFHALNNVSLEIERG-----ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPV 84 (252)
T ss_pred EEEecCCcchhhhhcceeEEecCC-----CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccce
Confidence 56666543 3688999999988 79999999999999999999999999999986 22211 2358
Q ss_pred EeecCcCC--CCCcCcHHHHHHhhhccC-C-CCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 416 SYKPQKIS--PKFQSTVRHLLHQKIRDS-Y-THPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 416 ~y~~q~~~--~~~~~tv~~~~~~~~~~~-~-~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
-+++|++. ..+..||.+.+....... . ...+.+.++++.+||. .+++++|.+|||||+|||||||||+.+|++||
T Consensus 85 QmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLI 164 (252)
T COG1124 85 QMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLI 164 (252)
T ss_pred eEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEE
Confidence 89999864 334568888775433221 1 1234588999999998 68999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||||+||+..+.+++++|.++.++++.|+|+||||+..+.++||||+||+.+..+ ...+..++.+.
T Consensus 165 lDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~iv--E~~~~~~l~~~ 232 (252)
T COG1124 165 LDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIV--EIGPTEELLSH 232 (252)
T ss_pred ecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEE--EeechhhhhcC
Confidence 999999999999999999999999999999999999999999999999999965543 33455555544
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=333.52 Aligned_cols=196 Identities=31% Similarity=0.449 Sum_probs=156.8
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.+ +.+.+++ .+.+|++++|+||||||||||||+|+|+++|..|+|. +.|..+..+..+.+
T Consensus 7 ~ls~~y~~~-~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~-----------l~g~~i~~~~~kel 74 (258)
T COG1120 7 NLSFGYGGK-PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL-----------LDGKDIASLSPKEL 74 (258)
T ss_pred EEEEEECCe-eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE-----------ECCCchhhcCHHHH
Confidence 467788854 6678887 4678999999999999999999999999999999984 55666665544433
Q ss_pred HHHHHHhhcccccccchh-hhhchh-------hhhcC--chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNV-------GQVLD--QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v-------~~~l~--~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
.+. .++.||....... .+...| ...+. ..++.+.++++++.+|+.++.+|.+.+|||||||||.||||
T Consensus 75 Ak~--ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 75 AKK--LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred hhh--EEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 332 2444554321111 111111 01122 33455679999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+++|++|+||||||+||+..+.+++++++++.+ +|+|||+|.||++.+..+||++++|.+
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~ 214 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKD 214 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999995 499999999999999999999999974
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=321.57 Aligned_cols=205 Identities=25% Similarity=0.305 Sum_probs=176.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
+..||+....+++++|++..| |+++|+||+|||||||||+|+|+..|++|++. +..+. +.++|
T Consensus 10 ~k~yp~~~~aL~~Vnl~I~~G-----E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iG 84 (258)
T COG3638 10 SKTYPGGHQALKDVNLEINQG-----EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIG 84 (258)
T ss_pred eeecCCCceeeeeEeEEeCCC-----cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhce
Confidence 677987777899999999998 68999999999999999999999999999875 21111 23599
Q ss_pred eecCcCCCCCcCcHHHHHHhhhc----------cCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIR----------DSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~----------~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
|++|+.......+|.+++..... ..+ .+...+-+.|+++||.+...++..+|||||||||+|||||++
T Consensus 85 mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q 164 (258)
T COG3638 85 MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ 164 (258)
T ss_pred eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence 99999888888899998753211 011 123456789999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|+++|.|||+|+|||.+...+++.|+++.++.|.|+|+..|++++|..+||||+-++.+.. .++|++.++...
T Consensus 165 ~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~i--vfDg~~~el~~~ 238 (258)
T COG3638 165 QPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI--VFDGPASELTDE 238 (258)
T ss_pred CCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcE--EEeCChhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999986543 577888885544
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=336.18 Aligned_cols=205 Identities=28% Similarity=0.381 Sum_probs=173.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+..|++...++++++|++.+| |++||+||||||||||+|+|+|+++|++|++. +.... ..++||+||
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~G-----ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~ 85 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPG-----EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQ 85 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCC-----eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEcc
Confidence 667773234789999999988 68999999999999999999999999999975 22221 235999999
Q ss_pred cCCCCCcCcHHHHHHhh--hccCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQK--IRDSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~--~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
++.....+|++|++... .+... .....++++++.++|.+..++++.+||+||||||+||+||+.+|++|||||||+
T Consensus 86 ~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~ 165 (293)
T COG1131 86 EPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTS 165 (293)
T ss_pred CCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCc
Confidence 98877889999987542 22211 124578899999999987789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+.++..++++|+++.++.+.||+++||.++++..+||||++++++.. .+.+++.++...
T Consensus 166 GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~--~~~g~~~~l~~~ 227 (293)
T COG1131 166 GLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKI--IAEGTPEELKEK 227 (293)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEE--EEeCCHHHHHHh
Confidence 99999999999999999776458999999999999999999999997553 466788887654
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=346.61 Aligned_cols=205 Identities=28% Similarity=0.398 Sum_probs=172.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|+.....+++++|++.+| |+++|+||||||||||+|+|+|+.+|++|++. +..+ ....++|++|+
T Consensus 10 ~~~~~~~~~~l~~vsl~i~~G-----e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 84 (356)
T PRK11650 10 RKSYDGKTQVIKGIDLDVADG-----EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQN 84 (356)
T ss_pred EEEeCCCCEEEeeeeEEEcCC-----CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 677732234688999999888 78999999999999999999999999999985 2222 12469999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
....+.+||.+++...... ... ....+.++++.++|.+++++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 85 YALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred ccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 8766678999988543221 111 124567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||++++..+|||+++|+++.. ...++|+++++.
T Consensus 165 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i--~~~g~~~~~~~~ 225 (356)
T PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA--EQIGTPVEVYEK 225 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE--EEECCHHHHHhC
Confidence 9999999999999998776799999999999999999999999986543 456888888654
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=341.55 Aligned_cols=205 Identities=20% Similarity=0.245 Sum_probs=171.6
Q ss_pred eeecCC---ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cc
Q 040300 349 RYKYPT---MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EF 413 (605)
Q Consensus 349 ~~~y~~---~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~ 413 (605)
++.|+. ....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ..
T Consensus 8 sk~y~~~~~~~~~L~~vsl~i~~G-----ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~ 82 (343)
T TIGR02314 8 TKVFHQGTKTIQALNNVSLHVPAG-----QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARR 82 (343)
T ss_pred EEEECCCCcceEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhc
Confidence 666752 134789999999988 68999999999999999999999999999875 22221 23
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIY 489 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ll 489 (605)
+|+|+||+.......||.+++...... ... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iL 162 (343)
T TIGR02314 83 QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVL 162 (343)
T ss_pred CEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 699999997765568999987542211 111 1245678999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 490 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||||++||+.++..++++|+++.++.|.|||+||||++.+..+||||++|+++.. ...+++.+++..
T Consensus 163 LlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~i--v~~g~~~~v~~~ 231 (343)
T TIGR02314 163 LCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL--IEQGTVSEIFSH 231 (343)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHcC
Confidence 999999999999999999999999776699999999999999999999999997554 356888888754
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=324.12 Aligned_cols=193 Identities=26% Similarity=0.328 Sum_probs=148.5
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
+++.|+.. -.|.+++ .+.+||+++||||||||||||||+|+|+.+|+.|++......-.....-.+..+|+
T Consensus 9 v~~~f~~~-~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~------- 80 (248)
T COG1116 9 VSKSFGGV-EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE------- 80 (248)
T ss_pred eEEEeCce-EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc-------
Confidence 45566653 3566666 46899999999999999999999999999999999742110000000011222232
Q ss_pred HHHHHhhcccccccchhh-hhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 162 DNLKAIIKPQYVDHIPKA-VQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~-~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
...+|.. +..+|.-. ..+.+.++++.++++.+||.+..++++++|||||||||||||||+.+|
T Consensus 81 -----------~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P 149 (248)
T COG1116 81 -----------DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRP 149 (248)
T ss_pred -----------CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCC
Confidence 2222321 11222111 123344568999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCccc
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGKPG 294 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~~~ 294 (605)
++|+||||+++||..+|..+.+.+.++.++ ++||++||||++++-+++|||++|..+|+
T Consensus 150 ~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~ 209 (248)
T COG1116 150 KLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPG 209 (248)
T ss_pred CEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCc
Confidence 999999999999999999999999999864 89999999999999999999999988774
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=324.06 Aligned_cols=203 Identities=26% Similarity=0.332 Sum_probs=166.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++
T Consensus 7 ~~~~~~-~~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 7 TKSFGG-RTVLKGVDLDVRRG-----EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred EEEECC-EEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 677765 34689999999888 78999999999999999999999999999875 22111 23589
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc--CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD--SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+||+.......|+.+++...... .... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llll 160 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999987655557999987542111 1111 23467789999999989999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||||++||+.++..++++|+++.++.+.|||+||||++++..+|||+++|+++.. ...++++++..
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 226 (235)
T cd03261 161 DEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI--VAEGTPEELRA 226 (235)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeE--EEecCHHHHcC
Confidence 9999999999999999999998654589999999999999999999999986543 34567776654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=345.59 Aligned_cols=226 Identities=27% Similarity=0.408 Sum_probs=182.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.... ...++|++
T Consensus 10 s~~y~~-~~vL~~vs~~i~~G-----eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~ 83 (402)
T PRK09536 10 SVEFGD-TTVLDGVDLSVREG-----SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP 83 (402)
T ss_pred EEEECC-EEEEEeeEEEECCC-----CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEc
Confidence 778876 45789999999888 78999999999999999999999999999885 22211 23599999
Q ss_pred CcCCCCCcCcHHHHHHhhhcc---CC-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQKIRD---SY-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~---~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+....+.+|+++++...... .+ .+...+.++++.+++.++.++++.+|||||||||+|||||+++|++|||
T Consensus 84 q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLL 163 (402)
T PRK09536 84 QDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLL 163 (402)
T ss_pred cCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 998777889999987542110 11 1234578899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc-cceecce
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL-FLSHLDI 570 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~-~l~~~~~ 570 (605)
||||+|||+.++..++++|+++.+ .+.|||++|||++++..+|||+++|+++.. ...++|+++++..+. -+.....
T Consensus 164 DEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~i--v~~G~~~ev~~~~~l~~~~~~~~ 240 (402)
T PRK09536 164 DEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRV--RAAGPPADVLTADTLRAAFDART 240 (402)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEecCHHHHhCcHHHHHHhCCce
Confidence 999999999999999999999965 589999999999999999999999986543 457899998775421 1112233
Q ss_pred EEEecCCCCccee
Q 040300 571 TFRRDPTNFRPRI 583 (605)
Q Consensus 571 ~~~~~~~~~rpr~ 583 (605)
.+..++.++.+.+
T Consensus 241 ~v~~~~~~~~~~~ 253 (402)
T PRK09536 241 AVGTDPATGAPTV 253 (402)
T ss_pred EEEecCCCCceEE
Confidence 3445666666555
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=310.34 Aligned_cols=205 Identities=26% Similarity=0.326 Sum_probs=172.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc---cC---cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE---IP---EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~---~~---~~~i~y~~q 420 (605)
+.+|++....+++++|+++.| ||+||+|||||||||+||+|++++.|++|.+. +.+ .+ ..+||.++.
T Consensus 8 ~K~y~~~v~AvrdVSF~ae~G-----ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~ 82 (245)
T COG4555 8 TKSYGSKVQAVRDVSFEAEEG-----EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFG 82 (245)
T ss_pred hhhccCHHhhhhheeEEeccc-----eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecC
Confidence 567877666789999999999 68999999999999999999999999999875 111 11 346888886
Q ss_pred cCCCCCcCcHHHHHHhh--hccC--CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQK--IRDS--YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~--~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
....+..+|++|++... +... .......+++.+.|++.+.+|+.+.+||-|+||||+|||||+++|++|+|||||+
T Consensus 83 e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~s 162 (245)
T COG4555 83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTS 162 (245)
T ss_pred CcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCC
Confidence 66666778999987532 1111 1224567889999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||+.++..+.+.|+++ ++.|++||++||+|+++..+||||++++.+.. ...++++.+....
T Consensus 163 GLDi~~~r~~~dfi~q~-k~egr~viFSSH~m~EvealCDrvivlh~Gev--v~~gs~~~l~~r~ 224 (245)
T COG4555 163 GLDIRTRRKFHDFIKQL-KNEGRAVIFSSHIMQEVEALCDRVIVLHKGEV--VLEGSIEALDART 224 (245)
T ss_pred CccHHHHHHHHHHHHHh-hcCCcEEEEecccHHHHHHhhheEEEEecCcE--EEcCCHHHHHHHH
Confidence 99999999999999997 45699999999999999999999999985443 4678888876653
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=309.83 Aligned_cols=227 Identities=25% Similarity=0.388 Sum_probs=189.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C----cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P----EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~----~~~i~y~~ 419 (605)
+++... ...+++++|++.+| |+++|+||||||||||||.|+|.+.|++|++. +... + ....+.+|
T Consensus 8 s~~~~G-r~ll~~vsl~~~pG-----ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlp 81 (259)
T COG4559 8 SYSLAG-RRLLDGVSLDLRPG-----EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLP 81 (259)
T ss_pred EEEeec-ceeccCcceeccCC-----cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcc
Confidence 444443 23578999999888 78999999999999999999999999999875 2111 1 12478899
Q ss_pred CcCCCCCcCcHHHHHHhhh-ccC---C--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc------CCC
Q 040300 420 QKISPKFQSTVRHLLHQKI-RDS---Y--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK------PAD 487 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~-~~~---~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~------~p~ 487 (605)
|+.+..|..||.|.+.... ... . .+...++++|...++..+..+...+|||||||||.+||.|++ +++
T Consensus 82 Q~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r 161 (259)
T COG4559 82 QNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGR 161 (259)
T ss_pred cCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCc
Confidence 9998889999999886532 211 1 234557889999999999999999999999999999999986 445
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccc-ccce
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMN-LFLS 566 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~-~~l~ 566 (605)
+|+||||||.||+.++..++++.++|+++ |..|+.|-||++++..+||||++|.++.. .+.|+|+++++... .-++
T Consensus 162 ~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv--~a~g~p~~vlt~Etl~~vy 238 (259)
T COG4559 162 WLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRV--IASGSPQDVLTDETLERVY 238 (259)
T ss_pred eEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeE--eecCCHHHhcCHHHHHHHh
Confidence 99999999999999999999999999765 79999999999999999999999996543 57799999999854 3455
Q ss_pred ecceEEEecCCCCcceee
Q 040300 567 HLDITFRRDPTNFRPRIN 584 (605)
Q Consensus 567 ~~~~~~~~~~~~~rpr~n 584 (605)
+.++.+-++|...-|.|-
T Consensus 239 g~~~~V~~~P~~~~P~V~ 256 (259)
T COG4559 239 GADIRVGRHPARNIPLVL 256 (259)
T ss_pred CCceeeeeccCCCCCeee
Confidence 788999999998888764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=334.00 Aligned_cols=203 Identities=29% Similarity=0.365 Sum_probs=170.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++. ..+++++|++.+| |++||+||||||||||+|+|+|+++|++|++. +.... ...++|+||
T Consensus 14 ~k~~~~~-~~l~~vsl~i~~G-----ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q 87 (306)
T PRK13537 14 EKRYGDK-LVVDGLSFHVQRG-----ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQ 87 (306)
T ss_pred EEEECCe-EEEecceEEEeCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEec
Confidence 7778753 4789999999888 68999999999999999999999999999875 22221 246999999
Q ss_pred cCCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......|+.+++...... .... ...+.++++.+++.+..++++.+|||||||||+||+||+++|++|||||||+
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred cCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 98766678999987532111 1111 2346688999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+.++..++++|+++.+ .|.|||++||+++++..+||||++|+++.. ...++++++...
T Consensus 168 gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~il~~G~i--~~~g~~~~l~~~ 228 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRK--IAEGAPHALIES 228 (306)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhc
Confidence 9999999999999999854 589999999999999999999999986543 466888888654
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=318.73 Aligned_cols=191 Identities=29% Similarity=0.373 Sum_probs=160.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~ 421 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+||+
T Consensus 7 ~~~~~~-~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 7 SKTYGS-VRALDDLSLTVEPG-----EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred EEEeCC-eeeecceeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 677765 34689999999888 78999999999999999999999999999875 22211 2359999998
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 7655567999887532111 111 123567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||+.++..++++|+++.++.|.|||++|||++++..+|||+++++++.
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~ 208 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGR 208 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 999999999999999866558999999999999999999999998654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=340.29 Aligned_cols=204 Identities=24% Similarity=0.311 Sum_probs=173.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ ....++|++|+
T Consensus 11 ~~~~~~~-~~l~~vs~~i~~G-----e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~ 84 (353)
T TIGR03265 11 RKRFGAF-TALKDISLSVKKG-----EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQS 84 (353)
T ss_pred EEEeCCe-EEEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 6777753 3688999998888 78999999999999999999999999999885 2222 13469999999
Q ss_pred CCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||.+++....... .. ....+.++++.++|.+++++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~ 164 (353)
T TIGR03265 85 YALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSA 164 (353)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 87666789999886433211 11 134678899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.+.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 165 LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i--~~~g~~~~~~~~ 225 (353)
T TIGR03265 165 LDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVI--EQVGTPQEIYRH 225 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999998777799999999999999999999999996554 356888888764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=315.82 Aligned_cols=190 Identities=27% Similarity=0.431 Sum_probs=159.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----cceeEeecCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----EFNVSYKPQKI 422 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----~~~i~y~~q~~ 422 (605)
+++|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++|+.
T Consensus 6 ~~~~~~~~~~l~~v~~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 6 SFSYKKGTEILDDLSLDLYAG-----EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred EEEeCCcCceeeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 667764123689999999888 78999999999999999999999999999875 22221 23599999985
Q ss_pred C-CCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040300 423 S-PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501 (605)
Q Consensus 423 ~-~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~ 501 (605)
. ..+..|+.+++.............+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 160 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHH
Confidence 3 234679999875422111122346788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
++..+.++|+++.+ .|.|+|++|||++++..+|||+++|+++
T Consensus 161 ~~~~l~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G 202 (205)
T cd03226 161 NMERVGELIRELAA-QGKAVIVITHDYEFLAKVCDRVLLLANG 202 (205)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999864 4899999999999999999999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=339.54 Aligned_cols=204 Identities=25% Similarity=0.321 Sum_probs=173.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ ...+++|++|+
T Consensus 13 ~~~~~~-~~~l~~isl~i~~G-----e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 86 (351)
T PRK11432 13 TKRFGS-NTVIDNLNLTIKQG-----TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQS 86 (351)
T ss_pred EEEECC-eEEEeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 677765 34688999999888 78999999999999999999999999999875 2221 13579999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||.+++...... ... ....+.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 87 ~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 87 YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred cccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 8766678999988643321 111 124677899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||.+++..+||||++|+++.. ...++|++++..
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i--~~~g~~~~~~~~ 227 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKI--MQIGSPQELYRQ 227 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999999776799999999999999999999999996543 356889888654
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=318.24 Aligned_cols=204 Identities=23% Similarity=0.347 Sum_probs=175.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+.+|+.. .++++++|++.+| ||++|+||||||||||+++|+|.++|++|++. +.++. +..|+.-
T Consensus 11 ~k~FGGl-~Al~~Vsl~v~~G-----ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RT 84 (250)
T COG0411 11 SKRFGGL-TAVNDVSLEVRPG-----EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIART 84 (250)
T ss_pred eeecCCE-EEEeceeEEEcCC-----eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceee
Confidence 6778765 4789999999998 68999999999999999999999999999986 22221 3458888
Q ss_pred cCcCCCCCcCcHHHHHHhhhc------c-----CC-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHH
Q 040300 419 PQKISPKFQSTVRHLLHQKIR------D-----SY-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~------~-----~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
+|.+.+...+||.||+..... . .+ ...+.+.++|+.+||.+.++++.++||+|||+||.|||||
T Consensus 85 FQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArAL 164 (250)
T COG0411 85 FQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARAL 164 (250)
T ss_pred cccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHH
Confidence 999988888999998754211 0 01 0124577899999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe-CCcceeeecCChhhhhccc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE-GQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~-g~~~~~~~~~~p~~~~~~~ 561 (605)
+.+|++||||||.+||.+....++.++|+++.++.|.||++|+|||..+..+||||+||+ |+. .+.|+|+++.+..
T Consensus 165 a~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~---IAeG~P~eV~~dp 241 (250)
T COG0411 165 ATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV---IAEGTPEEVRNNP 241 (250)
T ss_pred hcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcC---cccCCHHHHhcCH
Confidence 999999999999999999999999999999977678999999999999999999999998 444 5789999998763
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=317.44 Aligned_cols=190 Identities=22% Similarity=0.330 Sum_probs=158.9
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------ccee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNV 415 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i 415 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...+
T Consensus 8 ~~~~~~~~~~il~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 82 (216)
T TIGR00960 8 SKAYPGGHQPALDNLNFHITKG-----EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHI 82 (216)
T ss_pred EEEecCCCeeEEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhc
Confidence 6777542 24689999998888 78999999999999999999999999999875 22211 1358
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|++|+.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||
T Consensus 83 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 162 (216)
T TIGR00960 83 GMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLA 162 (216)
T ss_pred eEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999997655567999987532111 111 124567899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
||||+|||+.++..+.++|+++.+ .+.|||+||||++++..+|||+++|+++
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 163 DEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDINLVETYRHRTLTLSRG 214 (216)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999854 4899999999999999999999999854
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=299.82 Aligned_cols=203 Identities=29% Similarity=0.375 Sum_probs=173.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
.++|.... -.|++.+..| |+++|+||+|||||||+++|+|.+.|.+|++. +.+. ..+.+|+++|+
T Consensus 8 ~~~y~~~~---~~fdl~v~~g-----e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQE 79 (231)
T COG3840 8 RFSYGHLP---MRFDLTVPAG-----EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQE 79 (231)
T ss_pred EEeeCcce---EEEEEeecCC-----cEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhc
Confidence 67776532 2567777777 79999999999999999999999999999875 2221 24569999999
Q ss_pred CCCCCcCcHHHHHHhhhccC----CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS----YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
...+...||.+++....... ..+.+.++.++.++||..+.++.|.+|||||||||||||||+++-.|||||||+|+
T Consensus 80 nNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsA 159 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSA 159 (231)
T ss_pred cccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhh
Confidence 88777889999986544332 22346788899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||.-|.+++.++.++..+++.|++||||..+.+..++||+++++.+.. ...++..+++.+.
T Consensus 160 LdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri--~~~g~~~~~~~~~ 221 (231)
T COG3840 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRI--AAQGSTQELLSGK 221 (231)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEE--EeeccHHHHhccC
Confidence 9999999999999999999999999999999999999999999996553 4567777777653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=338.61 Aligned_cols=204 Identities=24% Similarity=0.333 Sum_probs=172.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCe--eeee--cccc---C--cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDS--DVEI---P--EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~--G~i~--~~~~---~--~~~i~y~~ 419 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++ |++. +..+ + ...++|++
T Consensus 12 ~~~~~~~-~~l~~vsl~i~~G-----e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vf 85 (362)
T TIGR03258 12 RVAYGAN-TVLDDLSLEIEAG-----ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85 (362)
T ss_pred EEEECCe-EEEeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEE
Confidence 6777653 4689999999888 6899999999999999999999999999 9875 2222 1 24699999
Q ss_pred CcCCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 420 QKISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
|+......+||++++....... .. ....+.++++.++|+++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus 86 Q~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~ 165 (362)
T TIGR03258 86 QNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL 165 (362)
T ss_pred CCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 9987666789999886432211 11 1245778999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcC-CcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHA-KKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~-g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++||+..+..+.+.|+++.++. |.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 166 s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i--~~~g~~~~~~~~ 229 (362)
T TIGR03258 166 SALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRL--AAHGEPQALYDA 229 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999999987665 79999999999999999999999986543 456888888765
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=315.66 Aligned_cols=190 Identities=25% Similarity=0.353 Sum_probs=158.2
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C--------c
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P--------E 412 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~--------~ 412 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ + .
T Consensus 7 ~~~~~~~~~~~~il~~~s~~i~~G-----~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (218)
T cd03255 7 SKTYGGGGEKVQALKGVSLSIEKG-----EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRR 81 (218)
T ss_pred EEEecCCCcceeEEeeeEEEEcCC-----CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHh
Confidence 6677642 34689999998888 78999999999999999999999999999875 2211 1 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
..++|++|+.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI 161 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCE
Confidence 3599999987655567999987542111 111 123567899999999989999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||||||++||+.++..+.++|+++.++.+.|||+||||++++. +||++++|+++
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G 216 (218)
T cd03255 162 ILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDG 216 (218)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCC
Confidence 99999999999999999999999986545899999999999997 89999999754
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=337.85 Aligned_cols=204 Identities=26% Similarity=0.340 Sum_probs=172.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~ 421 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|++|+
T Consensus 9 ~~~~~~~-~~l~~isl~i~~G-----e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~ 82 (353)
T PRK10851 9 KKSFGRT-QVLNDISLDIPSG-----QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQH 82 (353)
T ss_pred EEEeCCe-EEEEEeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecC
Confidence 6677653 4689999999888 78999999999999999999999999999875 22221 2469999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-----CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 422 ISPKFQSTVRHLLHQKIRD-----SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-----~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
......+||.+++...... ... ....+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||
T Consensus 83 ~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDE 162 (353)
T PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE 162 (353)
T ss_pred cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 7766678999987543211 111 12456789999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||++||+..+..+.+.|+++.++.+.|+|+||||++++..+||||++|+.+.. ...++|++++..
T Consensus 163 P~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i--~~~g~~~~i~~~ 227 (353)
T PRK10851 163 PFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI--EQAGTPDQVWRE 227 (353)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 99999999999999999999776689999999999999999999999986543 356888888654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=319.07 Aligned_cols=203 Identities=28% Similarity=0.358 Sum_probs=167.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+
T Consensus 9 ~~~~~~-~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 82 (239)
T cd03296 9 SKRFGD-FVALDDVSLDIPSG-----ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQH 82 (239)
T ss_pred EEEECC-EEeeeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecC
Confidence 677875 34789999999888 78999999999999999999999999999875 2221 12359999998
Q ss_pred CCCCCcCcHHHHHHhhhcc-CC----C---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SY----T---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~----~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+......|+.+++...... .. . ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 162 (239)
T cd03296 83 YALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 162 (239)
T ss_pred CcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 7655567999887532111 00 1 12345678999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||++||+.++..+.++|+++.++.|.|||+||||++++..+|||+++|+++.. ...++++++.+
T Consensus 163 P~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 226 (239)
T cd03296 163 PFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI--EQVGTPDEVYD 226 (239)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeE--EEecCHHHHhc
Confidence 99999999999999999998765589999999999999999999999986543 34567777654
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=336.45 Aligned_cols=197 Identities=24% Similarity=0.315 Sum_probs=168.1
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------cceeEeecCcCC
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------EFNVSYKPQKIS 423 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~~~i~y~~q~~~ 423 (605)
..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++|+..
T Consensus 7 ~~l~~vs~~i~~G-----ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 7 KGVNDADLAIAKG-----EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred eeEEeeEEEEcCC-----CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 4689999999888 78999999999999999999999999999885 22221 246999999987
Q ss_pred CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 424 PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
..+.+||++++...... ... ....+.++++.++|+.+.++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD 161 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 76678999987542211 111 12457789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.++..+.+.|.++.++.++|||+||||++++..+||||++|+++.. ...++|++++..
T Consensus 162 ~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~i--v~~g~~~ei~~~ 220 (363)
T TIGR01186 162 PLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEI--VQVGTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE--EeeCCHHHHHhC
Confidence 99999999999998766689999999999999999999999986543 456889988764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=314.52 Aligned_cols=200 Identities=24% Similarity=0.310 Sum_probs=163.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|
T Consensus 7 ~~~~~~-~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 7 VKKYGD-FEAVRGVSFRVRRG-----EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred EEEECC-EEeeeceeEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 666765 34688999998888 78999999999999999999999999999875 22111 135899999
Q ss_pred cCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......|+++++...... ... ....+.++++.+++.+..++++.+|||||||||+||+||+.+|++|||||||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 97655557998877432111 111 12356789999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
+||+.++..+.++|+++.++.+.|||++|||++++..+|||+++++++... ..+++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~--~~~~~~~ 218 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII--AEGTPEE 218 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE--EeCChHH
Confidence 999999999999999987655899999999999999999999999865432 3355544
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=340.10 Aligned_cols=204 Identities=24% Similarity=0.299 Sum_probs=172.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
++.|++. ..+++++|++.+| |+++|+|||||||||||++|+|+++|++|++. +..+ ....++|++|+
T Consensus 21 ~~~~~~~-~~l~~vsl~i~~G-----e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 94 (375)
T PRK09452 21 SKSFDGK-EVISNLDLTINNG-----EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQS 94 (375)
T ss_pred EEEECCe-EEEeeeEEEEeCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecC
Confidence 6777653 3688999999888 78999999999999999999999999999885 2222 13469999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||.+++...... .... ...+.++++.++|.+++++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 95 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 95 YALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred cccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 8766678999988643221 1111 23567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||...+..+.+.|+++.++.|.|+|+||||.+++..+||||++|+++.. ...++|++++..
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i--~~~g~~~~i~~~ 235 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRI--EQDGTPREIYEE 235 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999999877799999999999999999999999997554 356788888754
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=319.52 Aligned_cols=202 Identities=24% Similarity=0.305 Sum_probs=165.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
+++|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++
T Consensus 7 ~~~~~~~~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 81 (241)
T cd03256 7 SKTYPNGKKALKDVSLSINPG-----EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIG 81 (241)
T ss_pred EEecCCccEEEecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccE
Confidence 667764234689999999888 78999999999999999999999999999875 22211 13599
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc---------C-C--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD---------S-Y--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~---------~-~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
|+||+....+..|+.+++...... . . .....+.++++.+++....++++.+|||||+|||+|||||+.
T Consensus 82 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 161 (241)
T cd03256 82 MIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQ 161 (241)
T ss_pred EEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence 999997665567999887532110 0 0 112356778999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
+|++|||||||++||+.++..+.++|+++.++.|.|||+||||++++..+||++++|+++.. ...++++++
T Consensus 162 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~ 232 (241)
T cd03256 162 QPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI--VFDGPPAEL 232 (241)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EeecCHHHh
Confidence 99999999999999999999999999998765689999999999999999999999986543 345677765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=324.51 Aligned_cols=215 Identities=40% Similarity=0.648 Sum_probs=169.6
Q ss_pred EEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHH
Q 040300 85 HRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDN 163 (605)
Q Consensus 85 ~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 163 (605)
+.|+ +|.|...+ .+++||++||+|+||||||||+++|+|+++|+.|++... |..
T Consensus 8 ~~~~--~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~-----------g~~------------ 62 (246)
T cd03237 8 KTLG--EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE-----------LDT------------ 62 (246)
T ss_pred cccC--cEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEEC-----------Cce------------
Confidence 4444 36665555 467999999999999999999999999999999998522 110
Q ss_pred HHHhhcccccccchhhhhchhhhhcCc-----hHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEE
Q 040300 164 LKAIIKPQYVDHIPKAVQGNVGQVLDQ-----KDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIY 238 (605)
Q Consensus 164 ~~~~~~~q~~~~~~~~~~~~v~~~l~~-----~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vl 238 (605)
..+.+|+....+ ..++.+.+.. ........++++.++|.+.+++++.+|||||+|||+||+||+.+|++|
T Consensus 63 --i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 63 --VSYKPQYIKADY---EGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred --EEEecccccCCC---CCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 011122211100 0112111100 011234577899999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCC
Q 040300 239 MFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFV 317 (605)
Q Consensus 239 llDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~ 317 (605)
||||||++||+.++..+.++|+++.++ ++|||+||||++++..+||++++|+|+++.+|....|.+.++++|.|+.
T Consensus 138 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~--- 214 (246)
T cd03237 138 LLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLK--- 214 (246)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHHHHHHHHH---
Confidence 999999999999999999999999764 8999999999999999999999999999999999999999999999886
Q ss_pred CCcccccccccccccc
Q 040300 318 PTENLRFRDESLTFRV 333 (605)
Q Consensus 318 ~~e~~~~r~~~~~~~~ 333 (605)
.+++.||.++..++.
T Consensus 215 -~~~~~~~~~~~~~~p 229 (246)
T cd03237 215 -NLDITFRRDPETGRP 229 (246)
T ss_pred -HCCCEEecCcccCCC
Confidence 567788877766543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=317.70 Aligned_cols=202 Identities=23% Similarity=0.321 Sum_probs=165.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 7 ~~~~~~-~~~l~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 7 TKRFGG-LVALDDVSFSVRPG-----EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred EEEECC-EEEecCceEEecCC-----cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 667765 34689999999888 68999999999999999999999999999875 22111 1348999
Q ss_pred cCcCCCCCcCcHHHHHHhhhcc--CC------------CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 419 PQKISPKFQSTVRHLLHQKIRD--SY------------THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~--~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
||+.......|+++++...... .. .....+.++++.+++.+..++++.+|||||+|||+|||||+.
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9997655567999987432111 00 012356788999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+|||+++|+++.. ...++++++.+
T Consensus 161 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 232 (236)
T cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRV--IAEGTPDEVRN 232 (236)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEE--EeecCHHHhcc
Confidence 9999999999999999999999999999865 589999999999999999999999986543 34467776644
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=330.10 Aligned_cols=201 Identities=26% Similarity=0.333 Sum_probs=166.7
Q ss_pred ecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecCcC
Q 040300 351 KYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQKI 422 (605)
Q Consensus 351 ~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q~~ 422 (605)
+|++ ...+++++|++.+| |++||+||||||||||+|+|+|+++|++|++. +.... ...++|+||+.
T Consensus 2 ~y~~-~~~l~~vs~~i~~G-----e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 75 (302)
T TIGR01188 2 VYGD-FKAVDGVNFKVREG-----EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYA 75 (302)
T ss_pred eeCC-eeEEeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCC
Confidence 3544 34689999999888 78999999999999999999999999999875 22221 23599999997
Q ss_pred CCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 423 SPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 423 ~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
......|+.+++...... ... ....+.++++.+++.+..++++.+|||||||||+||+||+++|++|||||||+||
T Consensus 76 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 76 SVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 666667999987532111 111 1235678999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+.++..++++|+++.+ .|.|||++|||++++..+|||+++|+++.. ...++++++...
T Consensus 156 D~~~~~~l~~~l~~~~~-~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRI--IAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHHh
Confidence 99999999999999864 489999999999999999999999986543 356888887654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=338.02 Aligned_cols=203 Identities=27% Similarity=0.370 Sum_probs=170.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ ....++|++|+
T Consensus 10 ~~~~~~~-~vl~~vsl~i~~G-----e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~ 83 (369)
T PRK11000 10 TKAYGDV-VISKDINLDIHEG-----EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQS 83 (369)
T ss_pred EEEeCCe-EEEeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCC
Confidence 6777653 4689999999888 68999999999999999999999999999875 2221 12469999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||.+++...... .... ...+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 84 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 84 YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred cccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 7665678999987543211 1111 24577899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||+.++..+.+.|+++.++.|.|+|+||||++++..+|||+++|+++.. ...++|++++.
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i--~~~g~~~~i~~ 223 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV--AQVGKPLELYH 223 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHh
Confidence 9999999999999998766689999999999999999999999986543 35578888765
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=314.67 Aligned_cols=189 Identities=28% Similarity=0.350 Sum_probs=158.7
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc--CcceeEeecCc
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI--PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~--~~~~i~y~~q~ 421 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+
T Consensus 7 ~~~~~~~~~~~~il~~vs~~i~~G-----~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~ 81 (220)
T cd03293 7 SKTYGGGGGAVTALEDISLSVEEG-----EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQ 81 (220)
T ss_pred EEEcCCCCcceEEEeceeEEEeCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecc
Confidence 6667641 34689999999888 68999999999999999999999999999875 2222 12469999998
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~ 161 (220)
T cd03293 82 DALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSA 161 (220)
T ss_pred cccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 7654457999887532111 111 124567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~ 542 (605)
||+.++..++++|+++.++.+.|||+||||++++..+||++++|+
T Consensus 162 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (220)
T cd03293 162 LDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLS 206 (220)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999866568999999999999999999999998
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=332.63 Aligned_cols=203 Identities=25% Similarity=0.359 Sum_probs=170.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++. ..+++++|++.+| |++||+||||||||||+++|+|+++|++|++. +.... ...++|+||
T Consensus 48 ~k~y~~~-~~l~~is~~i~~G-----ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q 121 (340)
T PRK13536 48 SKSYGDK-AVVNGLSFTVASG-----ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQ 121 (340)
T ss_pred EEEECCE-EEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeC
Confidence 7778753 4789999999888 78999999999999999999999999999875 22211 235999999
Q ss_pred cCCCCCcCcHHHHHHhh--hccCCC--CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQK--IRDSYT--HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~--~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......|+.+++... ...... ....+.++++.+++.+..++++.+|||||||||+||+||+++|++|||||||+
T Consensus 122 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~ 201 (340)
T PRK13536 122 FDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201 (340)
T ss_pred CccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 97766778999987531 111111 12345678999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+.++..++++|+++.. .|.|||++|||++++..+||||++|+.+.. ...++++++...
T Consensus 202 gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~il~~G~i--~~~g~~~~l~~~ 262 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRK--IAEGRPHALIDE 262 (340)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhh
Confidence 9999999999999999865 599999999999999999999999986543 467888888654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=310.88 Aligned_cols=190 Identities=23% Similarity=0.259 Sum_probs=160.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~ 421 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+||+
T Consensus 7 ~~~~~~-~~~l~~~~~~i~~G-----~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 7 TKTYGK-KRVLDDISLHVKKG-----EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred EEEECC-eEeEeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 667765 34789999998888 78999999999999999999999999999875 22221 2359999998
Q ss_pred CCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040300 422 ISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~ 501 (605)
....+..|+.+++.............+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~ 160 (208)
T cd03268 81 PGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPD 160 (208)
T ss_pred CccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHH
Confidence 76655789999875322111113456788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
++..++++|+++.+ .+.|+|+||||++++..+||++++|+++.
T Consensus 161 ~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~ 203 (208)
T cd03268 161 GIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGK 203 (208)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 99999999999865 58999999999999999999999998654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=333.29 Aligned_cols=205 Identities=20% Similarity=0.282 Sum_probs=169.7
Q ss_pred eeecC--C-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cc
Q 040300 349 RYKYP--T-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EF 413 (605)
Q Consensus 349 ~~~y~--~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~ 413 (605)
+++|+ + ....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ..
T Consensus 8 ~~~y~~~~~~~~il~~vsl~i~~G-----ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 82 (343)
T PRK11153 8 SKVFPQGGRTIHALNNVSLHIPAG-----EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARR 82 (343)
T ss_pred EEEeCCCCCceEEEEeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhc
Confidence 67776 2 234789999999888 78999999999999999999999999999875 22211 23
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIY 489 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ll 489 (605)
.++|++|+.......|+.+++..... ..... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iL 162 (343)
T PRK11153 83 QIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVL 162 (343)
T ss_pred CEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 59999999776556899998754221 11111 235678999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 490 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||||++||+.++..++++|+++.++.|.|||+||||++++..+|||+++|+++.. ...+++++++..
T Consensus 163 lLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 231 (343)
T PRK11153 163 LCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL--VEQGTVSEVFSH 231 (343)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 999999999999999999999998766689999999999999999999999986543 345777777643
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=311.64 Aligned_cols=197 Identities=24% Similarity=0.379 Sum_probs=156.3
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|++. ..+++++ .+.+||++.++|||||||||+||+|.+++.|++|+|. +.|.++.++....+
T Consensus 6 nvsk~y~~~-~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~-----------i~g~~i~~~d~~~L 73 (309)
T COG1125 6 NVSKRYGNK-KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL-----------IDGEDISDLDPVEL 73 (309)
T ss_pred eeehhcCCc-eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEE-----------ECCeecccCCHHHH
Confidence 355677743 4566666 5689999999999999999999999999999999984 44444444332222
Q ss_pred HHHHHHhhcccccccchhh-hhch---hhhh--cCchHHHHHHHHHHhhcCCc--hhhcccCCCCChHHHHHHHHHHHHc
Q 040300 161 EDNLKAIIKPQYVDHIPKA-VQGN---VGQV--LDQKDERDMKADLCTDLDLN--QVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~-~~~~---v~~~--l~~~~~~~~~~~~l~~l~L~--~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
... ..+..|.+..+|.. +..+ |-.+ +.+...+++++|+++.+||+ ++.+|++++|||||+|||-+||||+
T Consensus 74 Rr~--IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 74 RRK--IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHh--hhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 222 23334544555543 1112 2222 24556678999999999997 4899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.+|+++++|||++.|||-.|..+.+.+.++.++ ++|||+||||++++..++|+|++|+++
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G 212 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAG 212 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCC
Confidence 999999999999999999999999999999875 999999999999999999999999743
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=312.95 Aligned_cols=189 Identities=26% Similarity=0.412 Sum_probs=158.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc--CcceeEeecCcCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI--PEFNVSYKPQKISP 424 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~--~~~~i~y~~q~~~~ 424 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+...
T Consensus 6 ~~~~~~-~~~l~~isl~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 6 TVSYGG-HPVLEDVSFEVKPG-----EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred eeEECC-EEeeecceeEEcCC-----CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 667765 34689999999888 78999999999999999999999999999875 2111 12469999998653
Q ss_pred C--CcCcHHHHHHhhhccC------C--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 425 K--FQSTVRHLLHQKIRDS------Y--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 425 ~--~~~tv~~~~~~~~~~~------~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
. +..|+.+++....... . .....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2 4479999875421110 0 1124567899999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|++||+.++..+.++|+++.+ .+.|+|+||||++++..+|||+++|+++
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 999999999999999999865 5899999999999999999999999864
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=319.20 Aligned_cols=202 Identities=23% Similarity=0.307 Sum_probs=165.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
++.|+.....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++
T Consensus 8 ~~~~~~~~~il~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 82 (243)
T TIGR02315 8 SKVYPNGKQALKNINLNINPG-----EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIG 82 (243)
T ss_pred eeecCCCcceeecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheE
Confidence 667762234689999999888 68999999999999999999999999999875 22211 23589
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc----------CC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD----------SY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~----------~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
|+||+.......|+.+++...... .. .....+.++++.+++....++++.+|||||+|||+|||||+.
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 162 (243)
T TIGR02315 83 MIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQ 162 (243)
T ss_pred EEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999997665567999987432110 00 112356788999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
+|++|||||||++||+.++..+.++|+++.++.|.|+|+||||++++..+||++++|+++.. ...++++++
T Consensus 163 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~ 233 (243)
T TIGR02315 163 QPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI--VFDGAPSEL 233 (243)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE--EecCCHHHh
Confidence 99999999999999999999999999998665589999999999999999999999986543 345677765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=324.56 Aligned_cols=205 Identities=26% Similarity=0.355 Sum_probs=167.7
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cc
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EF 413 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~ 413 (605)
++.|+.. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ..
T Consensus 9 ~~~y~~~~~~~~~~l~~vs~~i~~G-----e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (287)
T PRK13637 9 THIYMEGTPFEKKALDNVNIEIEDG-----EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK 83 (287)
T ss_pred EEECCCCCccccceeeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhh
Confidence 6677632 24688999998888 78999999999999999999999999999875 22211 23
Q ss_pred eeEeecCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCc--hhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 414 NVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 414 ~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~--~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
.++|+||++. ..+..||.+++...... .... ...+.++++.+++. +..++++.+|||||+|||+|||||+.+|
T Consensus 84 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P 163 (287)
T PRK13637 84 KVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEP 163 (287)
T ss_pred ceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCC
Confidence 5899999863 23567999987532111 1111 23567899999997 6889999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|||||||+|||+.++..++++|+++.++.|.|||+||||++++..+||||++|+.+.. ...++++++++.
T Consensus 164 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i--~~~g~~~~~~~~ 235 (287)
T PRK13637 164 KILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKC--ELQGTPREVFKE 235 (287)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999999999999765689999999999999999999999986543 356888887664
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=335.83 Aligned_cols=204 Identities=23% Similarity=0.329 Sum_probs=172.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+.+|++|++. +..+ ....++|++|+
T Consensus 26 ~~~~~~~-~~l~~vsl~i~~G-----e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~ 99 (377)
T PRK11607 26 TKSFDGQ-HAVDDVSLTIYKG-----EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQS 99 (377)
T ss_pred EEEECCE-EEEeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 6677653 4688899998888 78999999999999999999999999999875 2222 13469999999
Q ss_pred CCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||.+++....... .. ....+.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 100 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 100 YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 87766789999986432211 11 124567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||.+++..+|||+++|+++.. ...++|++++..
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i--~~~g~~~~~~~~ 240 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKF--VQIGEPEEIYEH 240 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEE--EEEcCHHHHHhC
Confidence 9999999999999998777799999999999999999999999986543 356888888754
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=297.17 Aligned_cols=192 Identities=21% Similarity=0.313 Sum_probs=166.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc--------cC--cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE--------IP--EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~--------~~--~~~i~ 416 (605)
+..|++...++.+++|++.+| |++-|+||+|||||||+|+|.+..+|++|++. +.+ ++ +.+||
T Consensus 8 ~k~Y~~g~~aL~~vs~~i~~G-----ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IG 82 (223)
T COG2884 8 SKAYPGGREALRDVSFHIPKG-----EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIG 82 (223)
T ss_pred hhhcCCCchhhhCceEeecCc-----eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheee
Confidence 677888766899999999998 67999999999999999999999999999985 111 22 34699
Q ss_pred eecCcCCCCCcCcHHHHHHhhhc--cC--CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIR--DS--YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~--~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
+++|+.....+.||+||+..... .. ......+.++|+.+||.+..+..|.+|||||||||+||||++.+|++||.|
T Consensus 83 vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlAD 162 (223)
T COG2884 83 VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD 162 (223)
T ss_pred eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeec
Confidence 99999888888999999754322 11 112356788999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
|||.+|||....++++++.++. ..|.||+|.|||.+.+..+-.|++.++.+..
T Consensus 163 EPTGNLDp~~s~~im~lfeein-r~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl 215 (223)
T COG2884 163 EPTGNLDPDLSWEIMRLFEEIN-RLGTTVLMATHDLELVNRMRHRVLALEDGRL 215 (223)
T ss_pred CCCCCCChHHHHHHHHHHHHHh-hcCcEEEEEeccHHHHHhccCcEEEEeCCEE
Confidence 9999999999999999999985 5699999999999999999999999986553
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=310.21 Aligned_cols=190 Identities=32% Similarity=0.463 Sum_probs=157.5
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 6 ~~~~~~~~~~il~~vs~~i~~G-----~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 6 SFSYPDGARPALDDISLTIKKG-----EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred EEecCCCCeeeecceEEEEcCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 6677641 24688999999888 78999999999999999999999999999875 22211 1358999
Q ss_pred cCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|+.. ..+..|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99864 24567999887532111 111 12356778999999998999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
||+|||+.++..+.+.|+++..+ +.|||+||||++++..+|||+++|+++
T Consensus 161 Pt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 161 PTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999998654 899999999999999999999999753
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=312.76 Aligned_cols=190 Identities=24% Similarity=0.343 Sum_probs=158.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
+++|+.....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++
T Consensus 8 ~~~~~~~~~il~~is~~i~~G-----~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 82 (214)
T TIGR02673 8 SKAYPGGVAALHDVSLHIRKG-----EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIG 82 (214)
T ss_pred eEEeCCCceeecceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheE
Confidence 666742234689999999888 78999999999999999999999999999875 22111 13589
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
|++|+.......|+.+++...... ... ....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++||||
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLD 162 (214)
T TIGR02673 83 VVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLAD 162 (214)
T ss_pred EEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 999987655567999887542111 111 1245678999999998899999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||+|||+.++..+.++|+++.+ .+.|||+||||++++..+|||+++|+++
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 163 EPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 99999999999999999999854 5899999999999999999999999753
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=311.81 Aligned_cols=200 Identities=28% Similarity=0.410 Sum_probs=148.5
Q ss_pred eEEEecCCcccCCCceEEeCCCc---eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNT---FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~---f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
+++|.||.+ .|+... -.+++++ .+.+||++||+|++|||||||.++|+|+.+|+.|+|..
T Consensus 3 ~l~v~nl~~--------~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~-------- 66 (252)
T COG1124 3 LLSVRNLSI--------VYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILL-------- 66 (252)
T ss_pred eEEEeceEE--------EecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEE--------
Confidence 677887765 444332 1344455 35899999999999999999999999999999999852
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchhhh---hchhhhhc----C---chHHHHHHHHHHhhcCCc-hhhccc
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV---QGNVGQVL----D---QKDERDMKADLCTDLDLN-QVIDRN 213 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~---~~~v~~~l----~---~~~~~~~~~~~l~~l~L~-~~~dr~ 213 (605)
.|..+..--.. ....-..|.+.+.|..- ..+|++.+ . ..+..+++.++++.+||. .+++|+
T Consensus 67 ---~G~~~~~~~~~-----~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~ 138 (252)
T COG1124 67 ---DGKPLAPKKRA-----KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRR 138 (252)
T ss_pred ---CCcccCccccc-----hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcC
Confidence 22211110000 00001123333333210 01232222 1 123345589999999997 689999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|||||+|||||||||+.+|++||||||||+||+..+..+++++.++.++ +.|+||||||+..+.++||||+||+.+
T Consensus 139 P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G 218 (252)
T COG1124 139 PHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNG 218 (252)
T ss_pred chhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCC
Confidence 9999999999999999999999999999999999999999999999999875 899999999999999999999999753
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=309.73 Aligned_cols=191 Identities=28% Similarity=0.419 Sum_probs=160.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+
T Consensus 7 ~~~~~~~-~~l~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 7 TKRFGNV-TALDDLNLDIADG-----EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred EEEECCe-eeeeceEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 6677653 4689999999888 78999999999999999999999999999875 2221 12359999998
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||+|
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 7655567999887532111 111 123567789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||+.++..++++|+++..+.+.|||+||||++++..+||++++++++.
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~ 208 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 999999999999999876568999999999999999999999998643
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=314.21 Aligned_cols=204 Identities=21% Similarity=0.294 Sum_probs=166.5
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cc
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EF 413 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~ 413 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ..
T Consensus 8 ~~~~~~~~~~~~il~~~s~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (233)
T cd03258 8 SKVFGDTGGKVTALKDVSLSVPKG-----EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARR 82 (233)
T ss_pred eEEccCCCCceeeeecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 6677653 14688999998888 78999999999999999999999999999875 22211 23
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIY 489 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ll 489 (605)
.++|+||+.......|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|
T Consensus 83 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 162 (233)
T cd03258 83 RIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVL 162 (233)
T ss_pred heEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 59999999765555799988753211 1111 1235678999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 490 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||||||++||+.++..+.++|+++.++.|.|||+||||++++..+||++++|+++.. ...++++++..
T Consensus 163 lLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 230 (233)
T cd03258 163 LCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV--VEEGTVEEVFA 230 (233)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEecCHHHHhc
Confidence 999999999999999999999998665589999999999999999999999986543 24466666543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=326.44 Aligned_cols=203 Identities=25% Similarity=0.348 Sum_probs=168.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+||
T Consensus 11 ~~~~~~~-~~l~~vsl~i~~G-----e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 84 (303)
T TIGR01288 11 SKSYGDK-VVVNDLSFTIARG-----ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQ 84 (303)
T ss_pred EEEeCCe-EEEcceeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEec
Confidence 6777653 4789999999888 78999999999999999999999999999875 22211 236999999
Q ss_pred cCCCCCcCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......|+.+++..... ..... ...+.++++.+++.+..++++.+|||||||||+||+||+.+|++|||||||+
T Consensus 85 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 85 FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9766556899998753111 11111 1345678999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+.++..++++|+++.. .|.|||++|||++++..+|||+++|+++.. ...++++++...
T Consensus 165 gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 225 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRK--IAEGRPHALIDE 225 (303)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhh
Confidence 9999999999999999865 589999999999999999999999986543 356788887653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=310.76 Aligned_cols=190 Identities=22% Similarity=0.321 Sum_probs=157.3
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C--------c
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P--------E 412 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~--------~ 412 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ + .
T Consensus 8 ~~~~~~~~~~~~~l~~isl~i~~G-----~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (221)
T TIGR02211 8 GKRYQEGKLDTRVLKGVSLSIGKG-----EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRN 82 (221)
T ss_pred eEEccCCCcceEeEeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHH
Confidence 6677531 24688999999888 78999999999999999999999999999875 2211 1 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
..++|++|+.......|+++++..... .... ....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++
T Consensus 83 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 162 (221)
T TIGR02211 83 KKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSL 162 (221)
T ss_pred hcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 359999998755556799998753211 1111 123567899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||||||++||+.++..+.++|+++.++.+.|||+||||++++.. +|++++|+++
T Consensus 163 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G 217 (221)
T TIGR02211 163 VLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDG 217 (221)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCC
Confidence 999999999999999999999999876568999999999999875 7999999864
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=323.90 Aligned_cols=206 Identities=21% Similarity=0.333 Sum_probs=168.3
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------- 411 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------- 411 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 9 ~~~y~~~~~~~~~~L~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (290)
T PRK13634 9 EHRYQYKTPFERRALYDVNVSIPSG-----SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPL 83 (290)
T ss_pred EEEECCCCcccccceeeEEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHH
Confidence 6677531 24789999999888 78999999999999999999999999999885 22221
Q ss_pred cceeEeecCcCC-CCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 412 EFNVSYKPQKIS-PKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 412 ~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
...++|++|++. ..+..||.+++....... .. ....+.++++.++|. .+.++++.+|||||+|||+|||||+++
T Consensus 84 ~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 163 (290)
T PRK13634 84 RKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAME 163 (290)
T ss_pred HhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 135999999853 234579998875322111 11 123567899999997 778999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|++|||||||++||+.++..+.++|+++.++.|.|||+||||++++..+||||++|+++.. ...++++++++..
T Consensus 164 P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i--~~~g~~~~~~~~~ 237 (290)
T PRK13634 164 PEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTV--FLQGTPREIFADP 237 (290)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHhcCH
Confidence 9999999999999999999999999998766689999999999999999999999986553 3557888876653
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=308.13 Aligned_cols=190 Identities=19% Similarity=0.261 Sum_probs=158.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
++.|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++
T Consensus 7 ~~~~~~~~~~l~~~sl~i~~G-----~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 81 (214)
T cd03292 7 TKTYPNGTAALDGINISISAG-----EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG 81 (214)
T ss_pred EEEeCCCceeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheE
Confidence 667764334689999999888 78999999999999999999999999999875 22111 12589
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
|++|+.......|+.+++...... ... ....+.++++.+++++..++++.+|||||+|||+|||||+.+|++||||
T Consensus 82 ~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 161 (214)
T cd03292 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIAD 161 (214)
T ss_pred EEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999987655557999887532111 111 1235678999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||++||+.++..+.++|+++.+ .+.|+|+||||++++..+||++++|+++
T Consensus 162 EPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G 212 (214)
T cd03292 162 EPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKELVDTTRHRVIALERG 212 (214)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999854 4899999999999999999999999854
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=320.20 Aligned_cols=201 Identities=26% Similarity=0.344 Sum_probs=165.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|+.....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++
T Consensus 11 ~~~~~~~~~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 85 (274)
T PRK13647 11 HFRYKDGTKALKGLSLSIPEG-----SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVF 85 (274)
T ss_pred EEEeCCCCeeeeeEEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEe
Confidence 677763334789999999888 78999999999999999999999999999885 22221 13599999
Q ss_pred CcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 420 QKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 420 q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
|++. ..+..|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||||
T Consensus 86 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP 165 (274)
T PRK13647 86 QDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP 165 (274)
T ss_pred cChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 9853 34567999887532111 111 123567889999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
|++||+.++..++++|+++.+ .|.|||++|||++++..+|||+++|+++.. ...++++.+
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~ 225 (274)
T PRK13647 166 MAYLDPRGQETLMEILDRLHN-QGKTVIVATHDVDLAAEWADQVIVLKEGRV--LAEGDKSLL 225 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHh
Confidence 999999999999999999865 489999999999999999999999986553 345777654
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=325.38 Aligned_cols=204 Identities=22% Similarity=0.287 Sum_probs=167.3
Q ss_pred eeecCCce----eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec--ccc------------
Q 040300 349 RYKYPTMV----KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD--VEI------------ 410 (605)
Q Consensus 349 ~~~y~~~~----~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~--~~~------------ 410 (605)
++.|++.. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.. ...
T Consensus 9 ~~~y~~~~~~~~~~l~~vsl~i~~G-----e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (305)
T PRK13651 9 VKIFNKKLPTELKALDNVSVEINQG-----EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKV 83 (305)
T ss_pred EEEECCCCCccccceeeeEEEEeCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccccc
Confidence 67776421 3688999999888 789999999999999999999999999998741 110
Q ss_pred -----------------C--cceeEeecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCc-hhhccCc
Q 040300 411 -----------------P--EFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIE-QLMDQEV 465 (605)
Q Consensus 411 -----------------~--~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~-~~~~~~~ 465 (605)
. ...++|++|++. ..+..||.+++...... ... ....+.++++.+++. ++.++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 163 (305)
T PRK13651 84 LEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSP 163 (305)
T ss_pred ccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCh
Confidence 0 235899999853 33556999887532211 111 124577899999996 7899999
Q ss_pred CcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 466 ~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
.+|||||||||+||+||+++|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||||++|+++.
T Consensus 164 ~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~~G~ 242 (305)
T PRK13651 164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFKDGK 242 (305)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999864 59999999999999999999999998654
Q ss_pred ceeeecCChhhhhcc
Q 040300 546 SVDCVANAPQSLLTG 560 (605)
Q Consensus 546 ~~~~~~~~p~~~~~~ 560 (605)
. ...++|++++..
T Consensus 243 i--~~~g~~~~~~~~ 255 (305)
T PRK13651 243 I--IKDGDTYDILSD 255 (305)
T ss_pred E--EEECCHHHHhcC
Confidence 3 466888888765
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=319.44 Aligned_cols=204 Identities=23% Similarity=0.253 Sum_probs=167.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++
T Consensus 14 ~~~~~~~-~il~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 87 (269)
T PRK11831 14 SFTRGNR-CIFDNISLTVPRG-----KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMS 87 (269)
T ss_pred EEEECCE-EEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEE
Confidence 6777653 4689999999888 78999999999999999999999999999875 22211 23589
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc--CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD--SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|++|+.......|+.+++...... .... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 88 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 167 (269)
T PRK11831 88 MLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167 (269)
T ss_pred EEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999997655557999887532211 1111 13456789999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||++||+.++..+.++|+++.++.|.|||+||||++++..+|||+++|+++.. ...+++++++..
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 234 (269)
T PRK11831 168 DEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKI--VAHGSAQALQAN 234 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEE--EEeCCHHHHhcC
Confidence 9999999999999999999998665589999999999999999999999986543 345777777653
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=302.61 Aligned_cols=204 Identities=25% Similarity=0.382 Sum_probs=173.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
..+|... ++.+++||++.+| ||+|++|||||||||.+.|+.|+.+|++|.+. +.++. +..|+|+
T Consensus 11 ~K~y~kr-~Vv~~Vsl~v~~G-----EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYL 84 (243)
T COG1137 11 AKSYKKR-KVVNDVSLEVNSG-----EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYL 84 (243)
T ss_pred hHhhCCe-eeeeeeeEEEcCC-----cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccc
Confidence 4556653 4689999999998 79999999999999999999999999999986 22221 3469999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCC------CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSY------THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~------~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
||+.+.+-.+||++++........ ......+++|+.|+|.++.+++..+||||||+|+.|||||+.+|+++|||
T Consensus 85 pQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 85 PQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred cccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEec
Confidence 999988778999998764322111 11223568999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
||+||+||-+...+.++|+.|. ++|..|+++.|+..+...+|||.+++..+.. .+.|+|+++.+..
T Consensus 165 EPFAGVDPiaV~dIq~iI~~L~-~rgiGvLITDHNVREtL~i~dRaYIi~~G~v--la~G~p~ei~~n~ 230 (243)
T COG1137 165 EPFAGVDPIAVIDIQRIIKHLK-DRGIGVLITDHNVRETLDICDRAYIISDGKV--LAEGSPEEIVNNE 230 (243)
T ss_pred CCccCCCchhHHHHHHHHHHHH-hCCceEEEccccHHHHHhhhheEEEEecCeE--EecCCHHHHhcCh
Confidence 9999999999999999999984 5699999999999999999999999975432 5789999998864
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=315.73 Aligned_cols=189 Identities=20% Similarity=0.302 Sum_probs=158.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc--CcceeEeecCcCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI--PEFNVSYKPQKISP 424 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~--~~~~i~y~~q~~~~ 424 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+...
T Consensus 8 ~~~~~~-~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~ 81 (255)
T PRK11248 8 YADYGG-KPALEDINLTLESG-----ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGL 81 (255)
T ss_pred EEEeCC-eeeEeeeeEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCcc
Confidence 667765 34689999998888 78999999999999999999999999999875 2222 12358999998765
Q ss_pred CCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 425 KFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
....|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||++||+
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 161 (255)
T PRK11248 82 LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161 (255)
T ss_pred CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 5557999887532111 111 123567899999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
.++..+.++|+++.++.|.|||+||||++++..+|||+++|++
T Consensus 162 ~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 162 FTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999998655589999999999999999999999983
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=309.28 Aligned_cols=191 Identities=18% Similarity=0.244 Sum_probs=158.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~ 416 (605)
++.|+.....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++
T Consensus 8 ~~~~~~~~~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 82 (222)
T PRK10908 8 SKAYLGGRQALQGVTFHMRPG-----EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIG 82 (222)
T ss_pred EEEecCCCeEEeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheE
Confidence 667732234688999998888 78999999999999999999999999999875 22111 13589
Q ss_pred eecCcCCCCCcCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
|++|+....+..|+.+++..... ..... ...+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (222)
T PRK10908 83 MIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLAD 162 (222)
T ss_pred EEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999765567899988753211 11111 124567899999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|||++||+.++..+.++|+++.. .+.|+|+||||++++..+|||+++|+++.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (222)
T PRK10908 163 EPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGH 214 (222)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999854 48999999999999999999999998654
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=320.06 Aligned_cols=204 Identities=25% Similarity=0.296 Sum_probs=168.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------ccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~~~i 415 (605)
.+.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...+
T Consensus 31 ~~~~~~~-~il~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 31 LKKTGQT-VGVNDVSLDVREG-----EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhcCCc-eEeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5667653 4689999999888 78999999999999999999999999999875 22111 1359
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|+||+....+..|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987655567999987532111 111 123467889999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||+|||+.++..+.++|+++..+.|.|||++|||++++..+||++++|+++.. ...++++++++.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 251 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRL--VQVGTPEEILTN 251 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999999999998665589999999999999999999999986543 345777777653
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=316.98 Aligned_cols=190 Identities=25% Similarity=0.318 Sum_probs=161.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--cceeEeecCcCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--EFNVSYKPQKISP 424 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--~~~i~y~~q~~~~ 424 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|+...
T Consensus 19 ~~~~~~~-~il~~isl~i~~G-----e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l 92 (257)
T PRK11247 19 SKRYGER-TVLNQLDLHIPAG-----QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARL 92 (257)
T ss_pred EEEECCc-ceeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccC
Confidence 6777653 4689999999888 78999999999999999999999999999875 11111 2359999998765
Q ss_pred CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040300 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRI 504 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~ 504 (605)
....|+.+++...... .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 93 ~~~~tv~enl~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~ 170 (257)
T PRK11247 93 LPWKKVIDNVGLGLKG--QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170 (257)
T ss_pred CCCCcHHHHHHhcccc--hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 4457999987542211 12345678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 505 VAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 505 ~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
.+.++|+++.++.+.|||+||||++++..+|||+++|+++..
T Consensus 171 ~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i 212 (257)
T PRK11247 171 EMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212 (257)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999998666689999999999999999999999986543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=329.53 Aligned_cols=198 Identities=25% Similarity=0.362 Sum_probs=152.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++||... .+++++ .++.||+++|+||||||||||||+|||+..|++|+|..
T Consensus 3 ~i~l~~v--------~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i----------- 62 (338)
T COG3839 3 ELELKNV--------RKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI----------- 62 (338)
T ss_pred EEEEeee--------EEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------
Confidence 5666664 55787653 666666 46899999999999999999999999999999999841
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|....+... .+-..++..|.....|.. +..++..- ..+.+.++++.++++.|+|+++++|++.+|||||
T Consensus 63 ~g~~vt~l~P----~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQ 138 (338)
T COG3839 63 DGRDVTDLPP----EKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQ 138 (338)
T ss_pred CCEECCCCCh----hHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhh
Confidence 1221111100 011112222222222321 11111111 1234567899999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
||||||||||+++|++++||||+|+||.+-|..+...|+++.++ +.|+|+||||..++..++|+|++|+
T Consensus 139 rQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~ 208 (338)
T COG3839 139 RQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMN 208 (338)
T ss_pred HHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEe
Confidence 99999999999999999999999999999999999999999875 8999999999999999999999997
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=307.23 Aligned_cols=189 Identities=27% Similarity=0.349 Sum_probs=157.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. . .+++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ ....++|++|+
T Consensus 7 ~~~~~~~--~-~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 7 RFSYGEQ--P-MHFDLTFAQG-----EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred EEEeCCE--e-cceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 6667642 1 3788888887 78999999999999999999999999999875 2221 12359999999
Q ss_pred CCCCCcCcHHHHHHhhhccCC----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDSY----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++........ .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~ 158 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAA 158 (211)
T ss_pred cccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 765555799998753221111 1234567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||+.++..+.++|+++.++.+.|+|+||||++++..+|||+++++++.
T Consensus 159 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 206 (211)
T cd03298 159 LDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206 (211)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCE
Confidence 999999999999999876568999999999999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=320.80 Aligned_cols=205 Identities=23% Similarity=0.390 Sum_probs=167.8
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------- 411 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------- 411 (605)
++.|+.. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 9 ~~~y~~~~~~~~~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (286)
T PRK13646 9 SYTYQKGTPYEHQAIHDVNTEFEQG-----KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPV 83 (286)
T ss_pred EEEECCCCccccCceeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHH
Confidence 6677532 24789999999888 78999999999999999999999999999875 22211
Q ss_pred cceeEeecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 412 EFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 412 ~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
...++|+||++. ..+..|+.+++...... ... ....+.++++.+|+. +..++++.+|||||+|||+|||||+.+
T Consensus 84 ~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~ 163 (286)
T PRK13646 84 RKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMN 163 (286)
T ss_pred HhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhC
Confidence 235899999853 33456998887542211 111 124567899999997 788999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|++|||||||++||+.++..+.++|+++.++.|.|||+||||++++..+|||+++|+++.. ...+++.+++..
T Consensus 164 p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i--~~~g~~~~~~~~ 236 (286)
T PRK13646 164 PDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSI--VSQTSPKELFKD 236 (286)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 9999999999999999999999999998665689999999999999999999999986553 356888887764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=329.07 Aligned_cols=200 Identities=25% Similarity=0.302 Sum_probs=167.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---------C--ccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---------P--EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---------~--~~~i 415 (605)
+++|++. .. +++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ + ...+
T Consensus 7 ~k~~~~~--~~-~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i 78 (352)
T PRK11144 7 KQQLGDL--CL-TVNLTLPAQ-----GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI 78 (352)
T ss_pred EEEeCCE--EE-EEEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCE
Confidence 5667652 22 788888877 78999999999999999999999999999875 2111 1 2369
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
+|++|+......+|+.+++...... .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 79 ~~v~q~~~l~~~~tv~enl~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt 156 (352)
T PRK11144 79 GYVFQDARLFPHYKVRGNLRYGMAK--SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL 156 (352)
T ss_pred EEEcCCcccCCCCcHHHHHHhhhhh--hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 9999997665668999987543221 22346788999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++||+.++..+.+.|+++.++.+.|+|+||||++++..+|||+++|+++.. ...++|++++..
T Consensus 157 s~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i--~~~g~~~~i~~~ 219 (352)
T PRK11144 157 ASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKV--KAFGPLEEVWAS 219 (352)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEE--EEecCHHHHHhC
Confidence 999999999999999998766689999999999999999999999986543 355788887664
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=310.67 Aligned_cols=203 Identities=19% Similarity=0.274 Sum_probs=166.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++|
T Consensus 8 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q 81 (236)
T TIGR03864 8 SFAYGA-RRALDDVSFTVRPG-----EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQ 81 (236)
T ss_pred EEEECC-EEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCC
Confidence 667765 34689999998888 78999999999999999999999999999875 22211 135899999
Q ss_pred cCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+....+..|+.+++...... ... ....+.++++.+++.+.+++++.+|||||+|||+|||||+.+|++|||||||+
T Consensus 82 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 82 QPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTV 161 (236)
T ss_pred CCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 97665678999887432111 111 12356788999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+||+.++..+.++|+++.++.|.|+|++|||++++.. |||+++|+++.. ...++++++...
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i--~~~~~~~~~~~~ 222 (236)
T TIGR03864 162 GLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRV--LADGAAAELRGA 222 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeE--EEeCCHHHHHHH
Confidence 9999999999999999865568999999999999975 999999986543 345677776553
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=308.04 Aligned_cols=201 Identities=26% Similarity=0.299 Sum_probs=162.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 7 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 7 NAGYGKS-QILFGVSLTVPEG-----EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred EeecCCe-eEeeeeeEEEcCC-----eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 6677653 4688999999888 68999999999999999999999999999875 22111 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccC--CCCHHHHHHHHhhc-CCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDS--YTHPQFVSDVMKPL-LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~--~~~~~~~~~~l~~l-~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
||+.......|+++++....... ......+.++++.+ ++.+..++++.+|||||+|||+|||||+.+|++|||||||
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99976555679998875321111 11123456778888 5788889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
++||+.++..++++|+++.. .+.|+|++|||++++..+||++++|+.+.. ...++++++.
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~ 220 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRV--VLEGTAAELL 220 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeE--EEeCCHHHHh
Confidence 99999999999999999865 589999999999999999999999986543 2345555543
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=309.43 Aligned_cols=202 Identities=26% Similarity=0.373 Sum_probs=164.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C-----cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P-----EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~-----~~~i~y~ 418 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... + ...++|+
T Consensus 7 ~~~~~~~-~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 7 SKRYGKR-KVVNGVSLSVKQG-----EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred EEEeCCE-EeeccceeEecCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 6777653 4688999999888 68999999999999999999999999999875 2211 1 1358999
Q ss_pred cCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
+|+.......|+++++...... ... ....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++||||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9987655556999877532111 111 123456889999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|+|||+.++..+.++|+++.+ .+.|+|++|||++++..+|||+++|+++.. ...++++++..
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 222 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKV--LAEGTPEEIAA 222 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeE--EEEeCHHHhhc
Confidence 999999999999999999864 589999999999999999999999986543 24466666544
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=314.42 Aligned_cols=203 Identities=26% Similarity=0.390 Sum_probs=167.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++
T Consensus 9 ~~~~~~-~~il~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (258)
T PRK13548 9 SVRLGG-RTLLDDVSLTLRPG-----EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLP 82 (258)
T ss_pred EEEeCC-eeeeeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEc
Confidence 677765 34789999999888 68999999999999999999999999999875 22111 13589999
Q ss_pred CcCCCCCcCcHHHHHHhhhccC-C---CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc------cCCCEE
Q 040300 420 QKISPKFQSTVRHLLHQKIRDS-Y---THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG------KPADIY 489 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~-~---~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~------~~p~ll 489 (605)
|+....+..|+.+++....... . .....+.++++.+++.+..++.+.+|||||+|||+|||||+ .+|++|
T Consensus 83 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ll 162 (258)
T PRK13548 83 QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162 (258)
T ss_pred cCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 9876656789999875421111 1 11245678899999999999999999999999999999999 599999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 490 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||||||++||+.++..+.++|+++.++.+.|||++|||++++..+|||+++|+.+.. ...++++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 230 (258)
T PRK13548 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRL--VADGTPAEVLT 230 (258)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEE--EeeCCHHHHhC
Confidence 999999999999999999999998645689999999999999999999999986543 34577777655
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=306.07 Aligned_cols=190 Identities=24% Similarity=0.361 Sum_probs=159.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---CcceeEeecCcCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---PEFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~~~~i~y~~q~~~ 423 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+..
T Consensus 7 ~~~~~~-~~~l~~v~~~i~~G-----~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 7 TKRFGR-VTALDDISFSVEKG-----EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred EEEECC-EEEEeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 566764 34688999998888 78999999999999999999999999999985 2221 1236999999976
Q ss_pred CCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 424 PKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
.....|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+||+||+.+|++|||||||+|||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 5556799988743211 1111 12456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+.++..+.++|+++.. .+.|||++|||.+++..+|||+++|+++.
T Consensus 161 ~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 205 (210)
T cd03269 161 PVNVELLKDVIRELAR-AGKTVILSTHQMELVEELCDRVLLLNKGR 205 (210)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhhhEEEEEeCCE
Confidence 9999999999999864 48999999999999999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=306.99 Aligned_cols=191 Identities=25% Similarity=0.325 Sum_probs=159.2
Q ss_pred eeecCCce---eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEe
Q 040300 349 RYKYPTMV---KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~---~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y 417 (605)
++.|++.. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +.... ...++|
T Consensus 8 ~~~~~~~~~~~~il~~~sl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 82 (218)
T cd03266 8 TKRFRDVKKTVQAVDGVSFTVKPG-----EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGF 82 (218)
T ss_pred EEecCCCCccceeecceEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEE
Confidence 66776531 4688999999888 78999999999999999999999999999875 22211 235999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
++|+.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||
T Consensus 83 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE 162 (218)
T cd03266 83 VSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDE 162 (218)
T ss_pred ecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99997555557999987432111 111 12456789999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||++||+.++..+.++|+++.+ .+.|+|+||||++++..+|||+++|+++.
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 213 (218)
T cd03266 163 PTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGR 213 (218)
T ss_pred CCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999854 58999999999999999999999998643
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=311.24 Aligned_cols=204 Identities=26% Similarity=0.363 Sum_probs=165.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+|
T Consensus 7 ~~~~~~~~~~l~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (242)
T cd03295 7 TKRYGGGKKAVNNLNLEIAKG-----EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVI 81 (242)
T ss_pred EEEeCCcceEeeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEc
Confidence 667765123688999998888 78999999999999999999999999999875 22211 23589999
Q ss_pred CcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCch--hhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 420 QKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQ--LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~--~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
|+.......|+.+++..... .... ....+.++++.+++.. ..++++.+|||||+|||+|||||+.+|++|||||
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 161 (242)
T cd03295 82 QQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDE 161 (242)
T ss_pred cCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 98766556799998753211 1111 1235678899999985 8899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||++||+.++..+.++|+++..+.|.|||+||||++++..+|||+++|+++... ..++++++..
T Consensus 162 Pt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~--~~~~~~~~~~ 225 (242)
T cd03295 162 PFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV--QVGTPDEILR 225 (242)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEE--EecCHHHHHc
Confidence 999999999999999999986655899999999999999999999999865542 3466666643
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=325.32 Aligned_cols=197 Identities=20% Similarity=0.308 Sum_probs=163.0
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeEeecCcCC-
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVSYKPQKIS- 423 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~y~~q~~~- 423 (605)
..+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+. ...++|++|+..
T Consensus 35 ~~l~~vsl~i~~G-----e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 35 KAVDGVTLRLYEG-----ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred EEEeeEEEEEcCC-----CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 4688999999888 78999999999999999999999999999875 22221 135999999963
Q ss_pred -CCCcCcHHHHHHhhhcc---CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 424 -PKFQSTVRHLLHQKIRD---SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 424 -~~~~~tv~~~~~~~~~~---~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
....+|+.+++...... ... ....+.++++.+++. ..+++++.+|||||+|||+|||||+.+|++|||||||
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPt 189 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPV 189 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 33457999887532211 111 123567889999994 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++||+.++..++++|+++.++.+.|+|+||||+.++.++||||++|..+.. ...+++++++..
T Consensus 190 s~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i--ve~g~~~~i~~~ 252 (331)
T PRK15079 190 SALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA--VELGTYDEVYHN 252 (331)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHcC
Confidence 999999999999999999766689999999999999999999999986543 345778877654
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=309.40 Aligned_cols=191 Identities=24% Similarity=0.273 Sum_probs=158.1
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------c
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------E 412 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~ 412 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... .
T Consensus 13 ~~~~~~~~~~~~~l~~~s~~i~~G-----e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 87 (228)
T PRK10584 13 KKSVGQGEHELSILTGVELVVKRG-----ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRA 87 (228)
T ss_pred EEEccCCCcceEEEeccEEEEcCC-----CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHh
Confidence 6777642 23688999998888 78999999999999999999999999999875 22211 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
..++|++|+.......|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++
T Consensus 88 ~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~l 167 (228)
T PRK10584 88 KHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDV 167 (228)
T ss_pred heEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 359999999765555799988643211 1111 134567899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|||||||+|||+.++..+.++|+++.++.|.|||++|||++++.. ||++++|+++.
T Consensus 168 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~ 223 (228)
T PRK10584 168 LFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQ 223 (228)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCE
Confidence 999999999999999999999999866568999999999999865 99999998654
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=328.97 Aligned_cols=201 Identities=41% Similarity=0.713 Sum_probs=173.8
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
+++.|| +|+|.--+ .+..||++|++||||.||||++|+|+|.++|+.|...
T Consensus 348 ~~k~~g--~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~-------------------------- 399 (591)
T COG1245 348 LKKTYG--DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-------------------------- 399 (591)
T ss_pred heeecC--ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCc--------------------------
Confidence 566676 58876555 5789999999999999999999999999999998611
Q ss_pred HHHHHhhcccccccchhhhhchhhhhcCchH-----HHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKD-----ERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE 236 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~-----~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~ 236 (605)
+++..+||||+... +.++|.+++.... ......++++-|+|+.++++++.+|||||+||||||.||.+++|
T Consensus 400 -~~~vSyKPQyI~~~---~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 400 -DLKVSYKPQYISPD---YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred -cceEeecceeecCC---CCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccC
Confidence 23456788887643 3556666554321 12345678899999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcC
Q 040300 237 IYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAG 315 (605)
Q Consensus 237 vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g 315 (605)
+|+||||++|||+.+|..++++|+++..+ ++|.++|+||+.++++++|++++..|.|+.+|....|.+.++|.|.||..
T Consensus 476 lYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN~FLk~ 555 (591)
T COG1245 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKN 555 (591)
T ss_pred EEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHHHHHHHHHH
Confidence 99999999999999999999999999864 89999999999999999999999999999999999999999999999873
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=310.19 Aligned_cols=192 Identities=20% Similarity=0.267 Sum_probs=158.1
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------c
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------E 412 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~ 412 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. .
T Consensus 12 ~~~~~~~~~~~~il~~isl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 86 (233)
T PRK11629 12 CKRYQEGSVQTDVLHNVSFSIGEG-----EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRN 86 (233)
T ss_pred EEEcCCCCcceeeEEeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHh
Confidence 6777642 24688999998888 78999999999999999999999999999875 22211 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
..++|++|+.......|+++++..... .... ....+.++++.+++.+..++.+.+|||||||||+|||||+.+|++
T Consensus 87 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 166 (233)
T PRK11629 87 QKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRL 166 (233)
T ss_pred ccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 359999999755455699998753211 1111 124567899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
|||||||++||+.++..+.++|+++..+.|.|||+||||++++..+ |++++|+++..
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i 223 (233)
T PRK11629 167 VLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRL 223 (233)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEE
Confidence 9999999999999999999999998655689999999999999875 69999986543
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=319.84 Aligned_cols=204 Identities=22% Similarity=0.349 Sum_probs=166.9
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------- 411 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------- 411 (605)
++.|+.. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 8 ~~~y~~~~~~~~~~l~~vsl~i~~G-----e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 82 (288)
T PRK13643 8 NYTYQPNSPFASRALFDIDLEVKKG-----SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPV 82 (288)
T ss_pred EEEeCCCCcccccceeeeEEEEcCC-----CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHH
Confidence 6677532 13688999999888 78999999999999999999999999999875 22211
Q ss_pred cceeEeecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 412 EFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 412 ~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
...++|++|++. ..+..|+.+++...... ... ....+.++++.+++. .+.++++.+|||||||||+||+||+.+
T Consensus 83 ~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~ 162 (288)
T PRK13643 83 RKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAME 162 (288)
T ss_pred HhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhC
Confidence 135899999863 34557999887542211 111 123467889999996 688999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|++|||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+||||++|+++.. ...++|++++..
T Consensus 163 p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i--~~~g~~~~~~~~ 234 (288)
T PRK13643 163 PEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHI--ISCGTPSDVFQE 234 (288)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCHHHHHcC
Confidence 999999999999999999999999999865 489999999999999999999999997654 456889988764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=313.63 Aligned_cols=189 Identities=24% Similarity=0.350 Sum_probs=148.9
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH-HHHHHHhhcc
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL-EDNLKAIIKP 170 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~-~~~~~~~~~~ 170 (605)
.+.+++ .+++||++||+|.||||||||+|++.++.+|++|++. +.|.++..+...-+ ...-+..+..
T Consensus 21 al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~-----------v~G~di~~l~~~~Lr~~R~~IGMIF 89 (339)
T COG1135 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF-----------VDGQDLTALSEAELRQLRQKIGMIF 89 (339)
T ss_pred eeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE-----------EcCEecccCChHHHHHHHhhccEEe
Confidence 456666 4689999999999999999999999999999999985 23322222211111 1111223334
Q ss_pred cccccch-hhhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 040300 171 QYVDHIP-KAVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPS 244 (605)
Q Consensus 171 q~~~~~~-~~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPt 244 (605)
|.+..+. +.+.+++.-- ..+.+..+++.++++.+||++..++++.+|||||||||+|||||+.+|+|||.||||
T Consensus 90 QhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaT 169 (339)
T COG1135 90 QHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEAT 169 (339)
T ss_pred ccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCcc
Confidence 4444333 2333333211 234566789999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 245 SYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 245 s~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+|||.+...+.++|+++.++ |.||++|||.++++..+||||.+|+.+
T Consensus 170 SALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G 218 (339)
T COG1135 170 SALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQG 218 (339)
T ss_pred ccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCC
Confidence 999999999999999999875 999999999999999999999999743
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=311.25 Aligned_cols=203 Identities=21% Similarity=0.279 Sum_probs=165.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++
T Consensus 10 ~~~~~~~-~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 83 (241)
T PRK14250 10 SYSSFGK-EILKDISVKFEGG-----AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVF 83 (241)
T ss_pred EEEeCCe-eeeeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEe
Confidence 6677653 4688999999888 78999999999999999999999999999875 22211 23599999
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
|+... +..|+.+++.............+.++++.+++. ++.++++.+|||||+|||+|||||+.+|++|||||||++|
T Consensus 84 q~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 162 (241)
T PRK14250 84 QQPHL-FEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSAL 162 (241)
T ss_pred cCchh-chhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 98654 456898876532111111234567889999996 6889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+.++..+.+.|+++.++.|.|||++|||++++..+|||+++|+++.. ...+++.+++..
T Consensus 163 D~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 222 (241)
T PRK14250 163 DPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL--VEYAKTYDFFTN 222 (241)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEE--EEeCCHHHHhcC
Confidence 999999999999998665589999999999999999999999986543 345777777653
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=306.32 Aligned_cols=199 Identities=26% Similarity=0.334 Sum_probs=162.1
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeec
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~ 419 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++
T Consensus 7 ~~~~~~~~~~il~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~ 81 (220)
T cd03263 7 TKTYKKGTKPAVDDLSLNVYKG-----EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCP 81 (220)
T ss_pred EEEeCCCCceeecceEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEec
Confidence 6677642 34689999999888 68999999999999999999999999999875 22211 23589999
Q ss_pred CcCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 420 QKISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
|+.......|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 161 (220)
T cd03263 82 QFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT 161 (220)
T ss_pred CcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 98765556799988743211 1111 1235678899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
++||+.++..+.++|+++.+ +.|+|++|||++++..+||++++++++.. ...+++++
T Consensus 162 ~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i--~~~~~~~~ 218 (220)
T cd03263 162 SGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKL--RCIGSPQE 218 (220)
T ss_pred CCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEE--EecCCHHH
Confidence 99999999999999999853 58999999999999999999999986543 23455554
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=317.85 Aligned_cols=204 Identities=24% Similarity=0.367 Sum_probs=167.3
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|
T Consensus 11 ~~~~~~~~~~~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13650 11 TFKYKEDQEKYTLNDVSFHVKQG-----EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGM 85 (279)
T ss_pred EEEcCCCCcCeeeeeeEEEEeCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceE
Confidence 6777632 23688999999888 78999999999999999999999999999875 22221 135899
Q ss_pred ecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
++|++. ..+..||.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||
T Consensus 86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD 165 (279)
T PRK13650 86 VFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD 165 (279)
T ss_pred EEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999863 34567999987532211 111 1245678999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+|||+.++..++++|+++..+.|.|||+||||++++. +|||+++++++.. ...++++++...
T Consensus 166 EPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i--~~~g~~~~~~~~ 230 (279)
T PRK13650 166 EATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQV--ESTSTPRELFSR 230 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEE--EEECCHHHHHcC
Confidence 9999999999999999999987656899999999999995 7999999986553 356888887665
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=305.84 Aligned_cols=198 Identities=27% Similarity=0.375 Sum_probs=146.4
Q ss_pred CceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH
Q 040300 82 DTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT 157 (605)
Q Consensus 82 ~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~ 157 (605)
++++.|+.. ...|.+++ .+++||+++|+|||||||||||++|+|+.+|+.|.+. +.|.++.....
T Consensus 6 ~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~-----------i~g~d~~~l~~ 74 (226)
T COG1136 6 NVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL-----------INGKDLTKLSE 74 (226)
T ss_pred eeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE-----------ECCEEcCcCCH
Confidence 455566533 13455666 4689999999999999999999999999999999964 22222211110
Q ss_pred HH--HHHHHHHhhcccccccchhh-hhchhhh--hcC---chHHHHHHHHHHhhcCCchhhc-ccCCCCChHHHHHHHHH
Q 040300 158 RI--LEDNLKAIIKPQYVDHIPKA-VQGNVGQ--VLD---QKDERDMKADLCTDLDLNQVID-RNVGDLSGGELQRFAIA 228 (605)
Q Consensus 158 ~~--~~~~~~~~~~~q~~~~~~~~-~~~~v~~--~l~---~~~~~~~~~~~l~~l~L~~~~d-r~v~~LSGGe~QRvaIA 228 (605)
.. ....-...+..|....+|.. +..++.- .+. .....+++.++++.+||++.++ ++|.+||||||||||||
T Consensus 75 ~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 00 01112223444555555543 1222210 111 1134667889999999997666 99999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||+.+|+++|.||||.+||.++...++++++++.++ |+||||||||...+. .|||++.|.+
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~d 217 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKD 217 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeC
Confidence 9999999999999999999999999999999999875 899999999998887 7999999864
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=320.50 Aligned_cols=202 Identities=24% Similarity=0.333 Sum_probs=168.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++ ...+++++|++.+| |++||+||||||||||+|+|+|+++|++|++. +.... ...++|+||
T Consensus 9 ~~~~~~-~~~l~~is~~i~~G-----ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q 82 (301)
T TIGR03522 9 TKLYGT-QNALDEVSFEAQKG-----RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE 82 (301)
T ss_pred EEEECC-EEEEEEeEEEEeCC-----eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecC
Confidence 677765 34789999999888 78999999999999999999999999999875 22221 135999999
Q ss_pred cCCCCCcCcHHHHHHhhhcc-CCC-C--HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIRD-SYT-H--PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~-~~~-~--~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......|+.+++...... ... . ...+.++++.+++.+..++.+.+|||||||||+||+||+.+|++|||||||+
T Consensus 83 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 97766667999987532111 111 1 2456789999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+.++..++++|+++. + ++|||++||+++++..+||||++|+++.. ...++++++...
T Consensus 163 gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 222 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINKGKI--VADKKLDELSAA 222 (301)
T ss_pred cCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHHh
Confidence 999999999999999984 3 79999999999999999999999986544 356888887553
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=310.07 Aligned_cols=202 Identities=21% Similarity=0.284 Sum_probs=165.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|
T Consensus 8 ~~~~~~-~~il~~~s~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 8 SKHFGP-TQVLHNIDLNIDQG-----EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred EEEECC-eEEeeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 667765 34689999999888 78999999999999999999999999999875 22211 225899
Q ss_pred ecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
++|+....+..|+.+++..... .... ....+.++++.+++++..++++.+|||||+|||+|||||+.+|++||||
T Consensus 82 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 161 (240)
T PRK09493 82 VFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD 161 (240)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9998765556799988743211 1111 1235678999999999899999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|||++||+.++..+.++|+++.+ .++|+|+||||++++..+|||+++|+++.. ...+++.++.+
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 225 (240)
T PRK09493 162 EPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRI--AEDGDPQVLIK 225 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EeeCCHHHHhc
Confidence 99999999999999999999864 489999999999999999999999986543 24466666644
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=304.93 Aligned_cols=189 Identities=25% Similarity=0.322 Sum_probs=158.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|
T Consensus 7 ~~~~~~-~~~l~~~s~~i~~G-----~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 7 HKSFGD-FHVLKGIDLTVKKG-----EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred EEEECC-eEeecCceEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 677765 34688999998888 78999999999999999999999999999875 22221 235899
Q ss_pred ecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
++|+.......|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 160 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999765556799988743211 1111 1235678899999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|+++
T Consensus 161 EP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~l~~g 211 (213)
T cd03262 161 EPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDG 211 (213)
T ss_pred CCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999865 5899999999999999999999999853
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=308.16 Aligned_cols=197 Identities=22% Similarity=0.319 Sum_probs=160.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC-----CCCeeeee--cccc---C------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL-----KPDSVEDS--DVEI---P------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~-----~p~~G~i~--~~~~---~------~ 412 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|++ +|++|++. +..+ . .
T Consensus 7 ~~~~~~~-~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 7 NVYYGDK-HALKDISLDIPKG-----EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred EEEcCCc-eeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 6777653 4689999999888 789999999999999999999999 99999875 2221 1 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CC-C---CHHHHHHHHhhcCCchhhccC--cCcCChhHHHHHHHHHHHccC
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SY-T---HPQFVSDVMKPLLIEQLMDQE--VVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~-~---~~~~~~~~l~~l~l~~~~~~~--~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..++|++|+.... ..|+.+++...... .. . ....+.++++.+++.+..++. +.+|||||+|||+|||||+.+
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 3589999987554 78999987532111 11 1 124567889999999877777 599999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
|++|||||||++||+.++..+.++|+++.+ . .|||++|||++++..+|||+++|+++.. ...+++++
T Consensus 160 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~ 226 (227)
T cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNMQQAARVADRTAFLLNGRL--VEFGPTEQ 226 (227)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccHHHHHHhCCEEEEEeCCEE--EEecCccc
Confidence 999999999999999999999999999854 3 8999999999999999999999986543 23455544
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=316.09 Aligned_cols=205 Identities=23% Similarity=0.282 Sum_probs=169.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++....+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+. ...++|++
T Consensus 10 ~~~~~~~~~~l~~vsl~i~~G-----e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 84 (277)
T PRK13652 10 CYSYSGSKEALNNINFIAPRN-----SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVF 84 (277)
T ss_pred EEEeCCCCceeeEeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEe
Confidence 677854334789999999888 78999999999999999999999999999875 22221 12589999
Q ss_pred CcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 420 QKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 420 q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
|+.. ..+..|+.+++...... .... ...+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++||||||
T Consensus 85 q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEP 164 (277)
T PRK13652 85 QNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP 164 (277)
T ss_pred cCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9863 24567999887532111 1111 23467899999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+|||+.++..+.++|+++.++.|.|||++|||++++..+|||+++|+.+.. ...++++++++.
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i--~~~g~~~~~~~~ 228 (277)
T PRK13652 165 TAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRI--VAYGTVEEIFLQ 228 (277)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE--EEECCHHHHhcC
Confidence 9999999999999999998765689999999999999999999999986543 356888888764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=312.34 Aligned_cols=202 Identities=23% Similarity=0.312 Sum_probs=165.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------------- 411 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 10 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK11264 10 VKKFHGQ-TVLHGIDLEVKPG-----EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQL 83 (250)
T ss_pred EEEECCe-eeeccceEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHh
Confidence 6777653 4689999999888 78999999999999999999999999999874 21111
Q ss_pred cceeEeecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 412 EFNVSYKPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 412 ~~~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
...++|+||+.......|+.+++..... .... ....+.++++.+++....++++.+|||||+|||+|||||+.+|
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p 163 (250)
T PRK11264 84 RQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRP 163 (250)
T ss_pred hhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCC
Confidence 2358999998765556799988743211 1111 1235677899999998889999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++|||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+++.. ...+++++++.
T Consensus 164 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 233 (250)
T PRK11264 164 EVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRI--VEQGPAKALFA 233 (250)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCHHHHhc
Confidence 99999999999999999999999999864 489999999999999999999999986543 34567776654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=329.61 Aligned_cols=198 Identities=23% Similarity=0.311 Sum_probs=166.2
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------cceeEeecCcC
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------EFNVSYKPQKI 422 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~~~i~y~~q~~ 422 (605)
...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|++|+.
T Consensus 41 ~~~L~~isl~i~~G-----ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~ 115 (400)
T PRK10070 41 SLGVKDASLAIEEG-----EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF 115 (400)
T ss_pred eEEEEeEEEEEcCC-----CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC
Confidence 34689999999888 78999999999999999999999999999875 22211 13599999997
Q ss_pred CCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 423 SPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 423 ~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
......|+.+++...... .+. ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 116 ~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~L 195 (400)
T PRK10070 116 ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSAL 195 (400)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 765668999987542211 111 1245678999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+.++..+.+.|+++.++.++|||+||||++++..+|||+++|+++.. ...++|+++...
T Consensus 196 D~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i--~~~g~~~~l~~~ 255 (400)
T PRK10070 196 DPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEV--VQVGTPDEILNN 255 (400)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEE--EecCCHHHHHhC
Confidence 999999999999998665689999999999999999999999986543 355788887654
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=317.10 Aligned_cols=206 Identities=23% Similarity=0.309 Sum_probs=169.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
++.|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|
T Consensus 12 ~~~~~~~~~~l~~vs~~i~~G-----e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~ 86 (283)
T PRK13636 12 NYNYSDGTHALKGININIKKG-----EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGM 86 (283)
T ss_pred EEEeCCCCeeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEE
Confidence 778863234789999999888 78999999999999999999999999999875 22221 135899
Q ss_pred ecCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
+||+.. ..+..|+.+++...... .... ...+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||
T Consensus 87 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilD 166 (283)
T PRK13636 87 VFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLD 166 (283)
T ss_pred EecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999863 23567999987532111 1111 245678899999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||+|||+.++..+.++|+++.++.|.|||++|||++++..+|||+++|+.+.. ...++++++.+..
T Consensus 167 EPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i--~~~g~~~~~~~~~ 233 (283)
T PRK13636 167 EPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRV--ILQGNPKEVFAEK 233 (283)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcCH
Confidence 999999999999999999998765689999999999999999999999986543 3568888877653
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=307.22 Aligned_cols=192 Identities=23% Similarity=0.333 Sum_probs=156.5
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C-------cc
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P-------EF 413 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~-------~~ 413 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ + ..
T Consensus 8 ~~~~~~~~~~~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (228)
T cd03257 8 SVSFPTGGGSVKALDDVSFSIKKG-----ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRK 82 (228)
T ss_pred eEeccCCCcceeeecCceeEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhc
Confidence 6677643 14688999999888 78999999999999999999999999999875 2211 1 13
Q ss_pred eeEeecCcCC--CCCcCcHHHHHHhhhcc---CCCCH--HH-HHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 414 NVSYKPQKIS--PKFQSTVRHLLHQKIRD---SYTHP--QF-VSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 414 ~i~y~~q~~~--~~~~~tv~~~~~~~~~~---~~~~~--~~-~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
.++|++|+.. .....|+++++...... ..... .. +.++++.+++. ...++++.+|||||+|||+|||||+.
T Consensus 83 ~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (228)
T cd03257 83 EIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALAL 162 (228)
T ss_pred cEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhc
Confidence 5999999863 33457999887432111 11111 11 24788999995 68899999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+|++|||||||++||+.++..+.++|+++.++.|.|||++|||++++..+|||+++|+++.
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 223 (228)
T cd03257 163 NPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGK 223 (228)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCE
Confidence 9999999999999999999999999999876558999999999999999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=311.85 Aligned_cols=204 Identities=21% Similarity=0.311 Sum_probs=166.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 12 ~~~~~~-~~~l~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (255)
T PRK11300 12 MMRFGG-LLAVNNVNLEVREQ-----EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRT 85 (255)
T ss_pred EEEECC-EEEEEeeeeEEcCC-----eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEe
Confidence 677765 34689999999888 68999999999999999999999999999875 22211 2348899
Q ss_pred cCcCCCCCcCcHHHHHHhhhc---------cC-----C-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHH
Q 040300 419 PQKISPKFQSTVRHLLHQKIR---------DS-----Y-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALC 479 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~---------~~-----~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA 479 (605)
+|+.......|+.+++..... .. . .....+.++++.+++.+..++++.+|||||+|||+||
T Consensus 86 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 165 (255)
T PRK11300 86 FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIA 165 (255)
T ss_pred ccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHH
Confidence 999766666799987753210 00 0 0113466788999999999999999999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 480 LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 480 ~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+||+.+|++|||||||+|||+.++..+.++|.++.++.+.|||++|||++++..+||++++++++.. ...++++++++
T Consensus 166 ~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i--~~~~~~~~~~~ 243 (255)
T PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTP--LANGTPEEIRN 243 (255)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE--EecCCHHHHhh
Confidence 9999999999999999999999999999999998655589999999999999999999999986543 34567777654
Q ss_pred c
Q 040300 560 G 560 (605)
Q Consensus 560 ~ 560 (605)
.
T Consensus 244 ~ 244 (255)
T PRK11300 244 N 244 (255)
T ss_pred C
Confidence 3
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=326.51 Aligned_cols=202 Identities=25% Similarity=0.315 Sum_probs=166.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----------Cccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----------PEFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----------~~~~i 415 (605)
+++|++. .+ +++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ ....+
T Consensus 6 ~~~~~~~--~~-~isl~i~~G-----ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i 77 (354)
T TIGR02142 6 SKRLGDF--SL-DADFTLPGQ-----GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77 (354)
T ss_pred EEEECCE--EE-EEEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCe
Confidence 5667653 34 788888777 78999999999999999999999999999875 2111 12359
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|++|+.......||.+++........ .....+.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||
T Consensus 78 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE 157 (354)
T TIGR02142 78 GYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157 (354)
T ss_pred EEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 999999766556799998754322111 112346789999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||++||+.++..+++.|+++.++.|.|+|+||||++++..+|||+++|+++.. ...+++++++..
T Consensus 158 Pts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 222 (354)
T TIGR02142 158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRV--AAAGPIAEVWAS 222 (354)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEE--EEECCHHHHhcC
Confidence 99999999999999999998765689999999999999999999999986543 345777777654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=307.69 Aligned_cols=201 Identities=24% Similarity=0.326 Sum_probs=163.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 7 ~~~~~~~-~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 7 NVYYGQS-HILRGVSLEVPKG-----EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred EEEeCCe-EEecceeeEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 6777653 4688999998888 78999999999999999999999999999875 21111 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccC-CCCHHHHHHHHhhcC-CchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDS-YTHPQFVSDVMKPLL-IEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~l~~l~-l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
||+.......|+.+++....... ........++++.++ +....++++.+|||||+|||+|||||+.+|++|||||||+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~ 160 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 99976555569998875322111 112234567788887 6778899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
+||+.++..+.++|+++.++.+.|+|++|||++++..+|||+++++++.. ...++++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i--~~~~~~~~~ 219 (230)
T TIGR03410 161 GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRV--VASGAGDEL 219 (230)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHc
Confidence 99999999999999998654589999999999999999999999986543 345666665
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=317.30 Aligned_cols=204 Identities=25% Similarity=0.362 Sum_probs=166.1
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------- 411 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------- 411 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 9 ~~~~~~~~~~~~~~l~~vsl~i~~G-----e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (287)
T PRK13641 9 DYIYSPGTPMEKKGLDNISFELEEG-----SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKL 83 (287)
T ss_pred EEEcCCCCCccccceeeeEEEEeCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHH
Confidence 6677531 23689999999888 78999999999999999999999999999875 22211
Q ss_pred cceeEeecCcCC-CCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 412 EFNVSYKPQKIS-PKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 412 ~~~i~y~~q~~~-~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
...++|++|++. ..+..|+.+++..... .... ....+.++++.++++ .+.++++.+|||||||||+|||||+.+
T Consensus 84 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~ 163 (287)
T PRK13641 84 RKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYE 163 (287)
T ss_pred HhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 135899999852 3345799988753211 1111 123567889999997 788999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|++|||||||+|||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+.+.. ...+++++++..
T Consensus 164 p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 235 (287)
T PRK13641 164 PEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKL--IKHASPKEIFSD 235 (287)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 999999999999999999999999999854 589999999999999999999999986543 355788877654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=312.51 Aligned_cols=198 Identities=25% Similarity=0.310 Sum_probs=172.2
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----------CcceeEeecCcCC
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----------PEFNVSYKPQKIS 423 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----------~~~~i~y~~q~~~ 423 (605)
..+.+.+|++..| ||..|.|-+|||||||+|+|.++++|++|++. +.++ ...++++++|+..
T Consensus 42 vGv~~~sl~v~~G-----eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 42 VGVNDASLDVEEG-----EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred EeeccceeeecCC-----eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 3467889999888 79999999999999999999999999999986 2211 2346999999998
Q ss_pred CCCcCcHHHHHHhhhccC----CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 424 PKFQSTVRHLLHQKIRDS----YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
..+..||.+|......-. ....+.+.++++.+||+.+.+++|.+||||+||||.|||||+.+|+|||+|||+|+||
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALD 196 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD 196 (386)
T ss_pred cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcC
Confidence 888899999875432211 1223567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|--|.++.+.|.+|.++.++||++||||+++|.++.|||.+|+++.. ...|+|+++....
T Consensus 197 PLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i--vQ~Gtp~eIl~~P 256 (386)
T COG4175 197 PLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI--VQVGTPEEILLNP 256 (386)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE--EEeCCHHHHHcCc
Confidence 99999999999999888899999999999999999999999998665 4569999998764
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=313.37 Aligned_cols=192 Identities=30% Similarity=0.359 Sum_probs=150.9
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeC--CCCh----hhhhhhhccchhh
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNN--PPDW----QEILTYFRGSELQ 153 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~--~~~~----~~~~~~~~g~~l~ 153 (605)
++++++|++....+++++ .+.+|+.++|+|+||||||||+++|+|+++|..|.+.. .+.. ...+....|..+|
T Consensus 7 ~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQ 86 (235)
T COG1122 7 ENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQ 86 (235)
T ss_pred EEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEE
Confidence 356778866544566666 45799999999999999999999999999999999731 1111 0011112233333
Q ss_pred hhHHHHHHHHHHHhhcccccccchhhhhchhhh---------hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHH
Q 040300 154 NYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQ---------VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQR 224 (605)
Q Consensus 154 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~---------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QR 224 (605)
+...++ +..+|.+ -+...+.++++.++++.+|+.++++|++.+|||||+||
T Consensus 87 npd~q~--------------------~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqR 146 (235)
T COG1122 87 NPDDQL--------------------FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQR 146 (235)
T ss_pred Cccccc--------------------ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceee
Confidence 322111 1112211 12334567899999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||.+|+++|++||||||||+||+..+.++++++++|.++ |+|||++|||++.+..+||++++|+.+
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G 215 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDG 215 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999999999987 799999999999999999999999753
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=308.27 Aligned_cols=182 Identities=25% Similarity=0.335 Sum_probs=152.6
Q ss_pred eeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--cceeEeecCcCCCCCcCcHHHHHH
Q 040300 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--EFNVSYKPQKISPKFQSTVRHLLH 435 (605)
Q Consensus 360 ~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--~~~i~y~~q~~~~~~~~tv~~~~~ 435 (605)
++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ....+|++|+.......|+.+++.
T Consensus 2 ~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 2 KGVNLTIQQG-----EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHH
Confidence 5778888887 78999999999999999999999999999875 22221 123589999876555579999875
Q ss_pred hhhc---cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040300 436 QKIR---DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509 (605)
Q Consensus 436 ~~~~---~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~ 509 (605)
.... ..... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 4211 11111 23467889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 510 IKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 510 l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
|+++.++.|.|||+||||++++..+|||+++|+++..
T Consensus 157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 193 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPA 193 (230)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcE
Confidence 9998765689999999999999999999999986554
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=311.38 Aligned_cols=204 Identities=21% Similarity=0.278 Sum_probs=167.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------------- 411 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+.
T Consensus 7 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 7 TKRFGI-LTVLDGLNFSVAAG-----EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred EEEeCC-eeEEeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 677765 34688999998888 78999999999999999999999999999875 22110
Q ss_pred -----cceeEeecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHH
Q 040300 412 -----EFNVSYKPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481 (605)
Q Consensus 412 -----~~~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~a 481 (605)
...++|++|+....+..|+.+++..... .... ....+.++++.+++.+..++.+.+|||||+|||+||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 2359999998766556899988753211 1111 12356788999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+.+|++|||||||++||+.++..+.++|+++.++.|.|+|+||||++++..+|||+++|+++.. ...++++++...
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 237 (252)
T TIGR03005 161 LAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI--VEQGKPDEIFRQ 237 (252)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCHHHHhcC
Confidence 99999999999999999999999999999998765589999999999999999999999986543 345667766543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=314.74 Aligned_cols=202 Identities=22% Similarity=0.309 Sum_probs=164.3
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeEeecCcCC-
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVSYKPQKIS- 423 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~y~~q~~~- 423 (605)
..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++|+..
T Consensus 25 ~il~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 25 PVLTNVSLSIEEG-----ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred EEeeCceeEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 4688999998888 78999999999999999999999999999875 22211 135999999853
Q ss_pred -CCCcCcHHHHHHhhhc--cCC---CCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 424 -PKFQSTVRHLLHQKIR--DSY---THPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 424 -~~~~~tv~~~~~~~~~--~~~---~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
.....|+.+++..... ... .....+.++++.+++. ...++++.+|||||+|||+|||||+.+|++|||||||+
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~ 179 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVS 179 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3335789887642211 111 1124567899999996 78899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccccc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFL 565 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l 565 (605)
+||+.++..++++|+++.++.|.|||+||||++++..+|||+++++++.. ...++++++....+.+.
T Consensus 180 ~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~~~~~~ 246 (265)
T TIGR02769 180 NLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI--VEECDVAQLLSFKHPAG 246 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEE--EEECCHHHHcCCCCHHH
Confidence 99999999999999998765689999999999999999999999986543 35688888876444333
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=307.71 Aligned_cols=201 Identities=23% Similarity=0.309 Sum_probs=165.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 9 ~~~~~~-~~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 82 (242)
T TIGR03411 9 SVSFDG-FKALNDLSLYVDPG-----ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRK 82 (242)
T ss_pred EEEcCC-eEEeeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEe
Confidence 677765 34789999998888 78999999999999999999999999999875 22211 1359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccC------C------CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDS------Y------THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~------~------~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+|+.......|+.+++....... . .....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|
T Consensus 83 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p 162 (242)
T TIGR03411 83 FQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDP 162 (242)
T ss_pred ccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99876555679999775321100 0 01245678899999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++|||||||++||+.++..++++|+++.. +.|||+||||++++..+|||+++++++.. ...++++++.+
T Consensus 163 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~--~~~~~~~~~~~ 231 (242)
T TIGR03411 163 KLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSV--LAEGSLDQVQA 231 (242)
T ss_pred CEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeE--EeeCCHHHHhc
Confidence 99999999999999999999999999853 68999999999999999999999986543 34567777654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=302.20 Aligned_cols=189 Identities=29% Similarity=0.428 Sum_probs=158.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~ 421 (605)
++.|+. .+.+++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++|+
T Consensus 7 ~~~~~~---~~~~~s~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 7 RYEYEH---LPMEFDLNVADG-----EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred eEEeCC---cceeeEEEEeCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 666753 346888888887 78999999999999999999999999999875 22211 2359999999
Q ss_pred CCCCCcCcHHHHHHhhhccCC----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDSY----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++........ .....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++|||||||++
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 158 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158 (213)
T ss_pred CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 765556799998753221111 1234567899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||+.++..+.++|+++.++.+.|+|+||||++++..+||++++|+++.
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~ 206 (213)
T TIGR01277 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGK 206 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCe
Confidence 999999999999999876558999999999999999999999998654
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=314.18 Aligned_cols=204 Identities=25% Similarity=0.348 Sum_probs=167.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
++.|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|
T Consensus 8 ~~~~~~~~~~l~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 82 (275)
T PRK13639 8 KYSYPDGTEALKGINFKAEKG-----EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGI 82 (275)
T ss_pred EEEeCCCCeeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEE
Confidence 677763334689999999888 78999999999999999999999999999885 22221 135899
Q ss_pred ecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
++|+.. ..+..|+.+++...... ... ....+.++++.+++.++.++++.+|||||+||++|||||+.+|++||||
T Consensus 83 v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 162 (275)
T PRK13639 83 VFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD 162 (275)
T ss_pred EeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999863 33567999887532111 111 1235678999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||++||+.++..++++|+++.+ .+.|||+||||++++..+|||+++|+.+.. ...+++++++..
T Consensus 163 EPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 227 (275)
T PRK13639 163 EPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDVDLVPVYADKVYVMSDGKI--IKEGTPKEVFSD 227 (275)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 99999999999999999999865 489999999999999999999999986543 345788887664
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=307.14 Aligned_cols=203 Identities=26% Similarity=0.358 Sum_probs=165.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. ..+++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|+||+
T Consensus 8 ~~~~~~~---~~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 8 TWLYHHL---PMRFDLTVERG-----ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred EEEECCc---cceeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence 6677642 23788888877 78999999999999999999999999999875 2221 12469999998
Q ss_pred CCCCCcCcHHHHHHhhhccC--CC--CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS--YT--HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~--~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++....... .. ....+.++++.+++++..++++.+|||||+|||+|||||+.+|++|||||||++
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 159 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSA 159 (232)
T ss_pred cccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 76554579999875321111 11 124577899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
||+.++..+.++|+++..+.|.|+|+||||++++..+|||+++++++.. ...++++++.+.+
T Consensus 160 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i--~~~g~~~~~~~~~ 221 (232)
T PRK10771 160 LDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRI--AWDGPTDELLSGK 221 (232)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhCh
Confidence 9999999999999998665689999999999999999999999986543 3557777776654
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=312.83 Aligned_cols=204 Identities=24% Similarity=0.378 Sum_probs=167.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C----cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P----EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~----~~~i~y~~ 419 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ + ...++|++
T Consensus 18 ~~~~~~~-~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 91 (265)
T PRK10575 18 SFRVPGR-TLLHPLSLTFPAG-----KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLP 91 (265)
T ss_pred EEEECCE-EEEeeeeeEEcCC-----CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEec
Confidence 6778653 4689999998888 78999999999999999999999999999875 2211 1 12589999
Q ss_pred CcCCCCCcCcHHHHHHhhhcc--C----CC--CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQKIRD--S----YT--HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~--~----~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+....+..|+.+++...... . .. ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllL 171 (265)
T PRK10575 92 QQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLL 171 (265)
T ss_pred cCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 986555667999887532110 0 11 123567899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||++||+.++..+.++|+++..+.+.|||++|||++++..+|||+++|+++.. ...++++++...
T Consensus 172 DEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 238 (265)
T PRK10575 172 DEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM--IAQGTPAELMRG 238 (265)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE--EEecCHHHhcCH
Confidence 9999999999999999999998665589999999999999999999999986543 345677777653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=320.45 Aligned_cols=205 Identities=22% Similarity=0.296 Sum_probs=167.8
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc------------
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI------------ 410 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~------------ 410 (605)
++.|+.. ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|+|. +..+
T Consensus 28 ~~~y~~~~~~~~~~L~~vsl~i~~G-----e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 102 (320)
T PRK13631 28 YCVFDEKQENELVALNNISYTFEKN-----KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITN 102 (320)
T ss_pred EEEeCCCCcccccceeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccccc
Confidence 7788642 24789999999888 78999999999999999999999999999875 2111
Q ss_pred ------C-----cceeEeecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHH
Q 040300 411 ------P-----EFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGEL 473 (605)
Q Consensus 411 ------~-----~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~ 473 (605)
. ...++|++|++. ..+..|+.+++...... ... ....+.++++.+++. .+.++.+.+||||||
T Consensus 103 ~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqk 182 (320)
T PRK13631 103 PYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQK 182 (320)
T ss_pred ccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHH
Confidence 0 135899999863 34566999887532211 111 123567889999997 689999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCC
Q 040300 474 QRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANA 553 (605)
Q Consensus 474 QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~ 553 (605)
|||+|||||+++|++|||||||++||+.++..++++|+++.. .|.|||+||||++++..+|||+++|+++.. ...++
T Consensus 183 qRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i--~~~g~ 259 (320)
T PRK13631 183 RRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKI--LKTGT 259 (320)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCC
Confidence 999999999999999999999999999999999999999854 589999999999999999999999986554 35688
Q ss_pred hhhhhccc
Q 040300 554 PQSLLTGM 561 (605)
Q Consensus 554 p~~~~~~~ 561 (605)
+++++...
T Consensus 260 ~~~~~~~~ 267 (320)
T PRK13631 260 PYEIFTDQ 267 (320)
T ss_pred HHHHhcCH
Confidence 88887653
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=325.11 Aligned_cols=204 Identities=25% Similarity=0.299 Sum_probs=169.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cc----ccC-----------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DV----EIP----------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~----~~~----------- 411 (605)
..+|+. ...+++++|++.+| |+++|+|+||||||||+|+|+|+++|++|++. +. ...
T Consensus 31 ~~~~g~-~~~l~~vsf~i~~G-----ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r 104 (382)
T TIGR03415 31 LDETGL-VVGVANASLDIEEG-----EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLR 104 (382)
T ss_pred HHhhCC-EEEEEeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHh
Confidence 334544 34689999999888 78999999999999999999999999999875 21 111
Q ss_pred cceeEeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 412 EFNVSYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 412 ~~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
...++|++|+.......|+.+++...... ... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 105 ~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 105 THRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 13599999998766668999987543211 111 12456789999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||||||++||+.++..+.+.|.++..+.++|+|+||||++++..+||||++|+++.. ...++|+++.+.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~i--v~~g~~~ei~~~ 255 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRI--IQHGTPEEIVLN 255 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEecCHHHHhhC
Confidence 99999999999999999999999998766689999999999999999999999997554 356888888653
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=303.18 Aligned_cols=191 Identities=19% Similarity=0.219 Sum_probs=160.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---cceeEeecCcCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---EFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---~~~i~y~~q~~~ 423 (605)
.+.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+||+..
T Consensus 7 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 7 SKRFGK-QTAVNNISLTVPKN-----SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred EEEECC-EEEEeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 566765 34688999998887 78999999999999999999999999999875 22111 236899999876
Q ss_pred CCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040300 424 PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~ 503 (605)
.....|+.+++.............+.++++.+++++..++++.+|||||+|||+|||||+.+|++|||||||++||+.++
T Consensus 81 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~ 160 (223)
T TIGR03740 81 LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGI 160 (223)
T ss_pred ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHH
Confidence 55557999887432111112345678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 504 IVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 504 ~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
..++++|+++.+ .|.|||++|||++++..+|||+++|+++..
T Consensus 161 ~~l~~~L~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i 202 (223)
T TIGR03740 161 QELRELIRSFPE-QGITVILSSHILSEVQQLADHIGIISEGVL 202 (223)
T ss_pred HHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEE
Confidence 999999999854 589999999999999999999999986543
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=313.54 Aligned_cols=204 Identities=25% Similarity=0.366 Sum_probs=168.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+|
T Consensus 14 ~~~~~~~-~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 87 (265)
T PRK10253 14 TLGYGKY-TVAENLTVEIPDG-----HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87 (265)
T ss_pred EEEECCE-EEeeecceEECCC-----CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEee
Confidence 7778753 4688999998888 78999999999999999999999999999875 22211 13589999
Q ss_pred CcCCCCCcCcHHHHHHhhh-cc-----CCC--CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQKI-RD-----SYT--HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~-~~-----~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+....+..|+.+++.... .. ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||
T Consensus 88 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 167 (265)
T PRK10253 88 QNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLL 167 (265)
T ss_pred ccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 9976656679998875321 10 011 123567889999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||+|||+.++..+.++|+++.++.+.|||++|||++++..+|||+++|+++.. ...+++.++...
T Consensus 168 DEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 234 (265)
T PRK10253 168 DEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKI--VAQGAPKEIVTA 234 (265)
T ss_pred eCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhhH
Confidence 9999999999999999999998665589999999999999999999999986543 345777777553
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=294.80 Aligned_cols=200 Identities=29% Similarity=0.451 Sum_probs=147.0
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC-CCh------
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP-PDW------ 140 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~-~~~------ 140 (605)
+|++.+|.| +|+...-.+.+++ ..++||++||+|+|||||||+||+|++++.|++|.+.-. -+.
T Consensus 1 Ml~v~~l~K--------~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~ 72 (245)
T COG4555 1 MLEVTDLTK--------SYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSF 72 (245)
T ss_pred Ceeeeehhh--------hccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHH
Confidence 355666555 5554311233333 247999999999999999999999999999999987411 000
Q ss_pred -hhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCCh
Q 040300 141 -QEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219 (605)
Q Consensus 141 -~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSG 219 (605)
.+.++...|. ..-|..-...+++. | .+.+.+ +...+.+.+.+++.+.|+|.+.+||.+.+||-
T Consensus 73 vrr~IGVl~~e-~glY~RlT~rEnl~------~--------Fa~L~~-l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~ 136 (245)
T COG4555 73 VRRKIGVLFGE-RGLYARLTARENLK------Y--------FARLNG-LSRKEIKARIAELSKRLQLLEYLDRRVGEFST 136 (245)
T ss_pred HhhhcceecCC-cChhhhhhHHHHHH------H--------HHHHhh-hhhhHHHHHHHHHHHHhChHHHHHHHHhhhch
Confidence 0001100000 00011001111111 1 011111 23445578899999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||||+|||||+++|++|+|||||||||+.++..+.+.|++++++|++||+.||+++++..+||+|+++..+
T Consensus 137 G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~G 209 (245)
T COG4555 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred hhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999643
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=301.72 Aligned_cols=188 Identities=25% Similarity=0.339 Sum_probs=156.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
++.|++. ..+++++|++.+| +++|+||||||||||+++|+|+++|++|++. +.... ...++|++|
T Consensus 7 ~~~~~~~-~~l~~vs~~i~~g------~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 7 TKRYGKK-RALDGVSLTLGPG------MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred EEEECCE-EEEcceeEEEcCC------cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 6677653 4688999988876 6999999999999999999999999999985 22211 235899999
Q ss_pred cCCCCCcCcHHHHHHhhhc-cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIR-DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~-~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred CCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 8765555799987643211 1111 12456788999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+||+.++..+.++|+++.. +.|+|+||||++++..+|||+++|+++.
T Consensus 160 ~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 160 GLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred cCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999853 5899999999999999999999998643
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=307.63 Aligned_cols=202 Identities=25% Similarity=0.350 Sum_probs=166.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 10 ~~~~~~-~~~l~~~sl~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 83 (241)
T PRK10895 10 AKAYKG-RRVVEDVSLTVNSG-----EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83 (241)
T ss_pred EEEeCC-EEEEeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEe
Confidence 677765 34789999999888 78999999999999999999999999999875 22211 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|+.......|+.+++..... .... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||
T Consensus 84 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (241)
T PRK10895 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163 (241)
T ss_pred ccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999765555799988753211 1111 12356789999999998999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||++||+.++..+.++|+++.. .|.|+|++|||++++..+||++++++++.. ...++++++.+
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~~ 226 (241)
T PRK10895 164 PFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHL--IAHGTPTEILQ 226 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeE--EeeCCHHHHhc
Confidence 9999999999999999999854 589999999999999999999999986543 34577777755
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=320.51 Aligned_cols=197 Identities=19% Similarity=0.253 Sum_probs=162.4
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeEeecCcCC-
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVSYKPQKIS- 423 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~y~~q~~~- 423 (605)
..+++++|++.+| |++||+|+||||||||+++|+|+++|++|++. +..+. ...++|++|+..
T Consensus 29 ~~l~~vsl~i~~G-----e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~ 103 (327)
T PRK11308 29 KALDGVSFTLERG-----KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYG 103 (327)
T ss_pred eEEeeeEEEECCC-----CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchh
Confidence 4688999999888 78999999999999999999999999999875 22211 135999999863
Q ss_pred -CCCcCcHHHHHHhhhcc--CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 424 -PKFQSTVRHLLHQKIRD--SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 424 -~~~~~tv~~~~~~~~~~--~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
.....++.+++...... ... ....+.++++.++|. ..+++++.+|||||+|||+|||||+.+|++||+||||+
T Consensus 104 ~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts 183 (327)
T PRK11308 104 SLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVS 183 (327)
T ss_pred hcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 33456887766432111 111 124578899999996 57899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+||+.++..++++|+++.++.|.|+|+||||+.++.++||||++|..+.. ...++++++++.
T Consensus 184 ~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i--ve~g~~~~~~~~ 245 (327)
T PRK11308 184 ALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC--VEKGTKEQIFNN 245 (327)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHhcC
Confidence 99999999999999999776799999999999999999999999986544 355777777664
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=308.53 Aligned_cols=197 Identities=24% Similarity=0.422 Sum_probs=163.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCc-
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQ- 427 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~- 427 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.. .....++|++|+......
T Consensus 11 ~~~~~~~-~vl~~vs~~i~~G-----e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~--~~~~~i~~v~q~~~~~~~l 82 (251)
T PRK09544 11 SVSFGQR-RVLSDVSLELKPG-----KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKR--NGKLRIGYVPQKLYLDTTL 82 (251)
T ss_pred EEEECCc-eEEEeEEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE--CCccCEEEecccccccccc
Confidence 6777653 4688999998888 789999999999999999999999999999751 113469999998643322
Q ss_pred -CcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040300 428 -STVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVA 506 (605)
Q Consensus 428 -~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l 506 (605)
.++.+++... .. .....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+
T Consensus 83 ~~~~~~~~~~~--~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 159 (251)
T PRK09544 83 PLTVNRFLRLR--PG-TKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL 159 (251)
T ss_pred ChhHHHHHhcc--cc-ccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 3666654321 11 1234567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 507 AKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 507 ~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.++|+++..+.+.|||+||||++++..+|||+++|+++ . ...++++++.+
T Consensus 160 ~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~-i--~~~g~~~~~~~ 209 (251)
T PRK09544 160 YDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHH-I--CCSGTPEVVSL 209 (251)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCc-e--EeeCCHHHHhC
Confidence 99999986555899999999999999999999999863 2 35577777754
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=320.50 Aligned_cols=205 Identities=18% Similarity=0.245 Sum_probs=163.9
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC----Ceeeee--ccccC--------
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP----DSVEDS--DVEIP-------- 411 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p----~~G~i~--~~~~~-------- 411 (605)
++.|+.. ...+++++|++.+| |++||+|+||||||||+++|+|+++| ++|++. +..+.
T Consensus 10 ~~~~~~~~~~~~~l~~vsl~i~~G-----e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~ 84 (326)
T PRK11022 10 SVHFGDESAPFRAVDRISYSVKQG-----EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERR 84 (326)
T ss_pred EEEECCCCccEEEEeeeEEEECCC-----CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHH
Confidence 5666542 24789999999988 78999999999999999999999984 788775 22221
Q ss_pred ---cceeEeecCcCC--CCCcCcHHHHHHhhhcc--CC---CCHHHHHHHHhhcCCc---hhhccCcCcCChhHHHHHHH
Q 040300 412 ---EFNVSYKPQKIS--PKFQSTVRHLLHQKIRD--SY---THPQFVSDVMKPLLIE---QLMDQEVVNLSGGELQRVAL 478 (605)
Q Consensus 412 ---~~~i~y~~q~~~--~~~~~tv~~~~~~~~~~--~~---~~~~~~~~~l~~l~l~---~~~~~~~~~LSGGe~QRvai 478 (605)
...++|+||+.. .....++.+.+...... .. .....+.++++.++|. ..+++++.+|||||+|||+|
T Consensus 85 ~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~i 164 (326)
T PRK11022 85 NLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMI 164 (326)
T ss_pred HHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHH
Confidence 125999999863 33446776544321111 11 1134577899999996 46789999999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 479 CLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 479 A~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
||||+.+|+|||+||||++||+.++..++++|+++.++.|.|+|+||||+.++.++||||++|.++.. ...+++++++
T Consensus 165 ArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~i--ve~g~~~~~~ 242 (326)
T PRK11022 165 AMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV--VETGKAHDIF 242 (326)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHh
Confidence 99999999999999999999999999999999999766799999999999999999999999986554 3567888877
Q ss_pred cc
Q 040300 559 TG 560 (605)
Q Consensus 559 ~~ 560 (605)
+.
T Consensus 243 ~~ 244 (326)
T PRK11022 243 RA 244 (326)
T ss_pred hC
Confidence 54
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=303.28 Aligned_cols=188 Identities=28% Similarity=0.402 Sum_probs=155.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------ccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~~~i 415 (605)
+++|++. .. +++|++.+ + +++|+||||||||||+++|+|+++|++|++. +.... ...+
T Consensus 7 ~~~~~~~--~~-~vsl~i~~-e-----~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 7 EKRLPDF--TL-KIDFDLNE-E-----VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred eEecCCe--ee-CceEEEcc-e-----eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 6677763 23 88887766 5 7999999999999999999999999999875 22110 2359
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|++|+.......|+.+++........ .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 157 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDE 157 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999765556799988753221111 112356789999999998999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||+|||+.++..+.++|+++.++.|.|+|++|||++++..+|||+++|+++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999876558999999999999999999999998654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=313.01 Aligned_cols=204 Identities=22% Similarity=0.302 Sum_probs=165.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|
T Consensus 8 ~~~~~~~-~il~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 81 (271)
T PRK13638 8 WFRYQDE-PVLKGLNLDFSLS-----PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVAT 81 (271)
T ss_pred EEEcCCc-ccccceEEEEcCC-----CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEE
Confidence 6777653 4689999999988 78999999999999999999999999999875 22211 135899
Q ss_pred ecCcCCC-CCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKISP-KFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~~-~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
++|+... .+..++.+++...... .... ...+.++++.+++.++.++++.+|||||+|||+|||||+.+|++||||
T Consensus 82 v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLD 161 (271)
T PRK13638 82 VFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLD 161 (271)
T ss_pred EeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9998642 3445777765432111 1111 134567899999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||++||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+++.. ...+++++++...
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~~ 227 (271)
T PRK13638 162 EPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQI--LTHGAPGEVFACT 227 (271)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcCh
Confidence 99999999999999999999864 489999999999999999999999986543 3557888776643
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=306.68 Aligned_cols=201 Identities=24% Similarity=0.295 Sum_probs=164.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------------cc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------------EF 413 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------------~~ 413 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +..+. ..
T Consensus 9 ~~~~~~~-~il~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (242)
T PRK11124 9 NCFYGAH-QALFDITLDCPQG-----ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRR 82 (242)
T ss_pred EEEECCe-eeEeeeeeEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHh
Confidence 6777653 4789999999888 78999999999999999999999999999875 22110 12
Q ss_pred eeEeecCcCCCCCcCcHHHHHHh-hhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQ-KIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~-~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
.++|+||+.......|+.+++.. .... ... ....+.++++.+++....++.+.+|||||+|||+|||||+.+|++
T Consensus 83 ~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l 162 (242)
T PRK11124 83 NVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred heEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 58999998765556799988742 1110 011 123567889999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
|||||||++||+.++..+.++|+++.+ .++|+|+||||++++..+|||+++|+++.. ...++++++.
T Consensus 163 lilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i--~~~~~~~~~~ 229 (242)
T PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHI--VEQGDASCFT 229 (242)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCHHHhc
Confidence 999999999999999999999999854 589999999999999999999999986543 2446666543
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=309.95 Aligned_cols=202 Identities=23% Similarity=0.291 Sum_probs=164.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------------- 411 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+.
T Consensus 12 ~~~~~~-~~~l~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK10619 12 HKRYGE-HEVLKGVSLQANAG-----DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKN 85 (257)
T ss_pred EEEECC-EEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccch
Confidence 677765 34689999999888 78999999999999999999999999999875 22111
Q ss_pred -----cceeEeecCcCCCCCcCcHHHHHHhhh---ccCC--CCHHHHHHHHhhcCCchhh-ccCcCcCChhHHHHHHHHH
Q 040300 412 -----EFNVSYKPQKISPKFQSTVRHLLHQKI---RDSY--THPQFVSDVMKPLLIEQLM-DQEVVNLSGGELQRVALCL 480 (605)
Q Consensus 412 -----~~~i~y~~q~~~~~~~~tv~~~~~~~~---~~~~--~~~~~~~~~l~~l~l~~~~-~~~~~~LSGGe~QRvaiA~ 480 (605)
...++|+||+.......|+++++.... .... .....+.++++.+++.+.. ++++.+|||||+|||+|||
T Consensus 86 ~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~lar 165 (257)
T PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 165 (257)
T ss_pred HHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 235999999976554579999874311 1111 1124567899999998764 8999999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 481 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||+.+|++|||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+.+..+ ..++++++..
T Consensus 166 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~--~~~~~~~~~~ 241 (257)
T PRK10619 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIE--EEGAPEQLFG 241 (257)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEE--EeCCHHHhhh
Confidence 99999999999999999999999999999999854 5899999999999999999999999865432 4466666543
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=302.49 Aligned_cols=195 Identities=24% Similarity=0.281 Sum_probs=145.1
Q ss_pred ceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 83 TTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 83 ~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
++++|+.. ...+++++ .+.+||+++|+|+||||||||+|+|+|+++|+.|++.. .|..+..+.....
T Consensus 7 l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~~~~~ 75 (216)
T TIGR00960 7 VSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF-----------NGQDLTRLRGREI 75 (216)
T ss_pred EEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEehhhcChhHH
Confidence 45566432 23566666 46899999999999999999999999999999999852 2222211100000
Q ss_pred -HHHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 161 -EDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 161 -~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
...-...+.+|.....+. .++.+.+ ......+++.++++.+||.+..++.+.+|||||+||++||+|
T Consensus 76 ~~~~~~i~~~~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSD---RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred HHHHHhceEEecCcccccc---ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 000012223333221111 1222111 112335678899999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+.+|++|||||||++||+.++..+.++|+++.+++.|||+||||++++..+||++++|.+
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 213 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSR 213 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999977789999999999999999999999964
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=307.75 Aligned_cols=203 Identities=25% Similarity=0.401 Sum_probs=167.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++
T Consensus 8 ~~~~~~-~~il~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 8 SWSAGG-RLIVDGVDVTAPPG-----SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred EEEECC-EEEEeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 667765 34789999999888 78999999999999999999999999999875 22211 12589999
Q ss_pred CcCCCCCcCcHHHHHHhhhc---cCC-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQKIR---DSY-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~---~~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+....+..|+.+++..... ..+ .....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 161 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLL 161 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99765567899998753210 000 1123567889999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||++||+.++..+.++|+++.+ .+.|||++|||++++..+|||+++|+++.. ...++++++...
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 227 (256)
T TIGR03873 162 DEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRV--VAAGPPREVLTP 227 (256)
T ss_pred cCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCE--EEecCHHHhhCH
Confidence 999999999999999999999864 489999999999999999999999986543 345777777554
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=293.93 Aligned_cols=157 Identities=49% Similarity=0.751 Sum_probs=137.8
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHH
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVS 449 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~ 449 (605)
++.+||+++|+||||||||||+|+|+|+++|++|++. +....++|++|+..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~~~q~~~-------------------------- 71 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE---WDGITPVYKPQYID-------------------------- 71 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEE---ECCEEEEEEcccCC--------------------------
Confidence 4445589999999999999999999999999999974 33345888887531
Q ss_pred HHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q 040300 450 DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFI 529 (605)
Q Consensus 450 ~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~ 529 (605)
|||||+|||+|||||+.+|+++||||||++||+.++..+.+.|+++.++.+.|+|+||||++
T Consensus 72 ------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 72 ------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred ------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 99999999999999999999999999999999999999999999986553489999999999
Q ss_pred HHHhhcCEEEEEeCCcceeeecCChhhhhccccccceecceEEE
Q 040300 530 MATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFR 573 (605)
Q Consensus 530 ~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 573 (605)
++..+||++++++++++.....+.|...+++.|.|+.+.-.+||
T Consensus 134 ~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (177)
T cd03222 134 VLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRGYLITFR 177 (177)
T ss_pred HHHHhCCEEEEEcCCCccceeccCCcchhHHHHHHHHhhccccC
Confidence 99999999999998887766779999999999999876655553
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=293.70 Aligned_cols=205 Identities=25% Similarity=0.324 Sum_probs=171.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+..|+. ...+.+++|++..| ||++|+|+||+|||||||+|+|+.+|.+|+|. +.++. +..++|+
T Consensus 10 ~~~YG~-~~~L~gvsl~v~~G-----eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~V 83 (237)
T COG0410 10 SAGYGK-IQALRGVSLEVERG-----EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYV 83 (237)
T ss_pred eecccc-eeEEeeeeeEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeC
Confidence 667876 45799999999998 79999999999999999999999999999986 23322 2469999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCC--CC-HHHHHHHHhhcC-CchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSY--TH-PQFVSDVMKPLL-IEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~--~~-~~~~~~~l~~l~-l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
||.-..+..+||+||+........ .. ....+++.+.|- |.+..++..++|||||||.+||||||+.+|++||||||
T Consensus 84 PegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEP 163 (237)
T COG0410 84 PEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163 (237)
T ss_pred cccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCC
Confidence 998877778999999865321111 11 111455666664 66788999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|.||-|.-..++.++|+++.++.|.||++|.++..++..+|||.+||+.+.. ...|+++++...+
T Consensus 164 s~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Gri--v~~G~~~eL~~~~ 228 (237)
T COG0410 164 SEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRI--VLSGTAAELLADP 228 (237)
T ss_pred ccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEE--EEecCHHHHhcCH
Confidence 9999999999999999999766688999999999999999999999997554 5678989888764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=312.69 Aligned_cols=205 Identities=24% Similarity=0.390 Sum_probs=167.6
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 12 ~~~~~~~~~~~l~~vsl~i~~G-----e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 86 (279)
T PRK13635 12 SFRYPDAATYALKDVSFSVYEG-----EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMV 86 (279)
T ss_pred EEEeCCCCccceeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEE
Confidence 6777642 34789999999888 78999999999999999999999999999875 22221 2359999
Q ss_pred cCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|+.. ..+..|+.+++...... .... ...+.++++.+++.+..++.+.+|||||+|||+|||||+.+|+||||||
T Consensus 87 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 166 (279)
T PRK13635 87 FQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166 (279)
T ss_pred EeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99863 34567999987532211 1111 2346788999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
||+|||+.++..++++|+++.++.|.|||+||||++++.. |||+++++++.. ...++++++....
T Consensus 167 Pt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i--~~~g~~~~~~~~~ 231 (279)
T PRK13635 167 ATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEI--LEEGTPEEIFKSG 231 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHHHHhcCH
Confidence 9999999999999999999876568999999999999975 999999986543 3567788776653
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=310.98 Aligned_cols=203 Identities=25% Similarity=0.322 Sum_probs=165.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|+.....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 8 ~~~~~~~~~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 82 (274)
T PRK13644 8 SYSYPDGTPALENINLVIKKG-----EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIV 82 (274)
T ss_pred EEEcCCCCceeeeeEEEEeCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEE
Confidence 667753234789999999888 78999999999999999999999999999875 22221 1359999
Q ss_pred cCcCCC-CCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKISP-KFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~~-~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|++.. .+..|+.+++....... .. ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||
T Consensus 83 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 162 (274)
T PRK13644 83 FQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162 (274)
T ss_pred EEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 998642 45579988874321111 11 12456788999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||++||+.++..++++|+++.. .|.|||++|||++++. .|||+++++.+.. ...++++++...
T Consensus 163 Pt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~~~-~~d~v~~l~~G~i--~~~g~~~~~~~~ 225 (274)
T PRK13644 163 VTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEELH-DADRIIVMDRGKI--VLEGEPENVLSD 225 (274)
T ss_pred CcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHh-hCCEEEEEECCEE--EEECCHHHHhcC
Confidence 9999999999999999999864 5899999999999995 5999999986543 355778877654
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=318.92 Aligned_cols=205 Identities=21% Similarity=0.338 Sum_probs=163.3
Q ss_pred eeecCC---ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC----CCeeeee--ccccC--------
Q 040300 349 RYKYPT---MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK----PDSVEDS--DVEIP-------- 411 (605)
Q Consensus 349 ~~~y~~---~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~----p~~G~i~--~~~~~-------- 411 (605)
++.|+. ....+++++|++.+| |+++|+|+||||||||+++|+|+++ |++|++. +..+.
T Consensus 10 ~~~y~~~~~~~~~l~~vsl~i~~G-----e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (330)
T PRK15093 10 TIEFKTSDGWVKAVDRVSMTLTEG-----EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred EEEEeCCCCCEEEEeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHH
Confidence 566642 234689999999888 7899999999999999999999997 5789875 22211
Q ss_pred ---cceeEeecCcCCC--CCcCcHHHHHHhhhc-----cC-CC----CHHHHHHHHhhcCCch---hhccCcCcCChhHH
Q 040300 412 ---EFNVSYKPQKISP--KFQSTVRHLLHQKIR-----DS-YT----HPQFVSDVMKPLLIEQ---LMDQEVVNLSGGEL 473 (605)
Q Consensus 412 ---~~~i~y~~q~~~~--~~~~tv~~~~~~~~~-----~~-~~----~~~~~~~~l~~l~l~~---~~~~~~~~LSGGe~ 473 (605)
...++|++|+... ....|+.+.+..... .. .. ....+.++++.++|.+ .+++++.+|||||+
T Consensus 85 ~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~ 164 (330)
T PRK15093 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGEC 164 (330)
T ss_pred HHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHH
Confidence 1259999998642 234678776542111 00 01 1245678999999973 56899999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCC
Q 040300 474 QRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANA 553 (605)
Q Consensus 474 QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~ 553 (605)
|||+|||||+.+|+||||||||++||+.++..++++|+++.++.|.|+|+||||+.++..+||||++|.++.. ...++
T Consensus 165 QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~i--ve~g~ 242 (330)
T PRK15093 165 QKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQT--VETAP 242 (330)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEECC
Confidence 9999999999999999999999999999999999999998766699999999999999999999999986554 35577
Q ss_pred hhhhhcc
Q 040300 554 PQSLLTG 560 (605)
Q Consensus 554 p~~~~~~ 560 (605)
+++++..
T Consensus 243 ~~~i~~~ 249 (330)
T PRK15093 243 SKELVTT 249 (330)
T ss_pred HHHHHhC
Confidence 7777653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=313.74 Aligned_cols=205 Identities=22% Similarity=0.338 Sum_probs=164.8
Q ss_pred eeecCCce----eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------
Q 040300 349 RYKYPTMV----KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------- 411 (605)
Q Consensus 349 ~~~y~~~~----~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------- 411 (605)
+++|++.. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 13 ~~~~~~~~~~~~~il~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 87 (289)
T PRK13645 13 SYTYAKKTPFEFKALNNTSLTFKKN-----KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKR 87 (289)
T ss_pred EEEeCCCCccccceeeeeEEEEeCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHH
Confidence 66776432 3689999999888 78999999999999999999999999999875 22110
Q ss_pred -cceeEeecCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 412 -EFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 412 -~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
...++|++|+.. ..+..|+.+++...... .... ...+.++++.+++. ++.++++.+|||||+|||+|||||+.
T Consensus 88 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~ 167 (289)
T PRK13645 88 LRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAM 167 (289)
T ss_pred HhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 125899999853 23456898877532111 1111 13456789999994 78899999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|++|||||||+|||+.++..++++|+++.++.++|||+||||++++..+|||+++++++.. ...+++++++..
T Consensus 168 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 241 (289)
T PRK13645 168 DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV--ISIGSPFEIFSN 241 (289)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 99999999999999999999999999998765689999999999999999999999986543 345777777654
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=311.74 Aligned_cols=204 Identities=24% Similarity=0.330 Sum_probs=164.3
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------- 411 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------- 411 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+.
T Consensus 9 ~~~~~~~~~~~~~~l~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (280)
T PRK13649 9 SYTYQAGTPFEGRALFDVNLTIEDG-----SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQI 83 (280)
T ss_pred EEEcCCCCccccceeeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHH
Confidence 6677542 23688999999888 78999999999999999999999999999875 22211
Q ss_pred cceeEeecCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 412 EFNVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 412 ~~~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
...++|++|+.. ..+..|+.+++...... .... ...+.++++.+++. ...++++.+|||||||||+|||||+.+
T Consensus 84 ~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~ 163 (280)
T PRK13649 84 RKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAME 163 (280)
T ss_pred HhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 135899999852 23456999887532111 1111 23456788999997 578999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|++|||||||++||+.++..+.++|+++.+ .+.|||+||||++++..+|||+++|+++.. ...++++++...
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 235 (280)
T PRK13649 164 PKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKL--VLSGKPKDIFQD 235 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 999999999999999999999999999864 489999999999999999999999986543 345778877664
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=293.55 Aligned_cols=217 Identities=26% Similarity=0.390 Sum_probs=182.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+.+|.+. ..++++++++.+| .+++|+|||||||||||.+++.++++++|++. +..+. ..+++...
T Consensus 8 ~K~y~~~-~vl~~isl~i~~g-----~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILk 81 (252)
T COG4604 8 SKSYGTK-VVLDDVSLDIPKG-----GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILK 81 (252)
T ss_pred hHhhCCE-EeeccceeeecCC-----ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHH
Confidence 6677753 4689999999888 58999999999999999999999999999975 22221 12477788
Q ss_pred CcCCCCCcCcHHHHHHhh-hcc-----CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 420 QKISPKFQSTVRHLLHQK-IRD-----SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~-~~~-----~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
|........||++++... .+. ...+...+++.++.|+|+++.+++..+||||||||..||+.|+++.|.+||||
T Consensus 82 Q~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 82 QENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred hhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecC
Confidence 887766778999988642 221 12345678999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc-cceecceEE
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL-FLSHLDITF 572 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~-~l~~~~~~~ 572 (605)
|.++||.++..+++++|++++.+.|+||++|-||+++|..++|.|+.|+++.. ...|+|+++.+..+. -+..+++++
T Consensus 162 PLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~v--v~~G~~~eii~~~~L~eiydm~i~v 239 (252)
T COG4604 162 PLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKV--VKQGSPDEIIQPEILSEIYDMDIPV 239 (252)
T ss_pred cccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEE--EecCCHHHhcCHHHHHHHhcCCcee
Confidence 99999999999999999999999999999999999999999999999996543 578999999987542 233455555
Q ss_pred E
Q 040300 573 R 573 (605)
Q Consensus 573 ~ 573 (605)
.
T Consensus 240 ~ 240 (252)
T COG4604 240 E 240 (252)
T ss_pred E
Confidence 3
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=305.12 Aligned_cols=203 Identities=24% Similarity=0.247 Sum_probs=163.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 12 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (237)
T PRK11614 12 SAHYGK-IQALHEVSLHINQG-----EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIV 85 (237)
T ss_pred EEeeCC-ceeeeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEe
Confidence 667765 34688999999888 78999999999999999999999999999875 22211 1359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc-cCC-CCHHHHHHHHhhc-CCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIR-DSY-THPQFVSDVMKPL-LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~-~~~-~~~~~~~~~l~~l-~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
+|+.......|+.+++..... ... .....+.++++.+ ++.+..++++.+|||||+|||+|||||+.+|++|||||||
T Consensus 86 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt 165 (237)
T PRK11614 86 PEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165 (237)
T ss_pred ccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 998765445799988753211 111 1123355677777 5777888999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++||+.++..+.++|+++.+ .|.|||++|||++++..+|||+++|+++.. ...++++++...
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 227 (237)
T PRK11614 166 LGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHV--VLEDTGDALLAN 227 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHhhCCEEEEEeCCEE--EeeCCHHHHhcC
Confidence 99999999999999999864 489999999999999999999999986543 355788887653
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=309.45 Aligned_cols=201 Identities=22% Similarity=0.301 Sum_probs=165.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCe---eeee--ccccC------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS---VEDS--DVEIP------------ 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~---G~i~--~~~~~------------ 411 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|+. |++. +....
T Consensus 11 ~~~~~~-~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (262)
T PRK09984 11 AKTFNQ-HQALHAVDLNIHHG-----EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84 (262)
T ss_pred EEEeCC-eEEEecceEEEcCC-----cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHH
Confidence 677765 34689999998888 7899999999999999999999999874 8764 22111
Q ss_pred cceeEeecCcCCCCCcCcHHHHHHhhhcc----------CC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHH
Q 040300 412 EFNVSYKPQKISPKFQSTVRHLLHQKIRD----------SY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALC 479 (605)
Q Consensus 412 ~~~i~y~~q~~~~~~~~tv~~~~~~~~~~----------~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA 479 (605)
...++|+||+....+..|+.+++...... .. .....+.++++.+++.+..++.+.+|||||+|||+||
T Consensus 85 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 164 (262)
T PRK09984 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIA 164 (262)
T ss_pred HhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHH
Confidence 12589999997665667999887532110 00 1124567899999999999999999999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 480 LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 480 ~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
|||+.+|++|||||||++||+.++..+.++|+++.++.|.|||++|||++++..+|||+++|+++.. ...++++++
T Consensus 165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i--~~~g~~~~~ 240 (262)
T PRK09984 165 RALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV--FYDGSSQQF 240 (262)
T ss_pred HHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHh
Confidence 9999999999999999999999999999999998765689999999999999999999999986543 356777775
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=307.54 Aligned_cols=203 Identities=27% Similarity=0.416 Sum_probs=166.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +.... ...++|+|
T Consensus 9 ~~~~~~-~~il~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (255)
T PRK11231 9 TVGYGT-KRILNDLSLSLPTG-----KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLP 82 (255)
T ss_pred EEEECC-EEEEeeeeeEEcCC-----cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEec
Confidence 677775 34689999999888 78999999999999999999999999999875 22111 12599999
Q ss_pred CcCCCCCcCcHHHHHHhhhc---cCC-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQKIR---DSY-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~---~~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+.......|+.+++..... ..+ .....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||
T Consensus 83 q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 162 (255)
T PRK11231 83 QHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLL 162 (255)
T ss_pred ccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98765555689888653211 001 1123567889999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||+|||+.++..+.++|+++.. .+.|+|++|||++++..+|||+++++++.. ...++++++.+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 228 (255)
T PRK11231 163 DEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLNQASRYCDHLVVLANGHV--MAQGTPEEVMTP 228 (255)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHhcCEEEEEECCeE--EEEcCHHHhcCH
Confidence 999999999999999999999854 489999999999999999999999986543 345677777653
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=316.20 Aligned_cols=194 Identities=29% Similarity=0.443 Sum_probs=148.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.....|.+++ .+++|+++||+||||||||||+|+|+|+++|++|++.. .|.+....... .
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i-----------~G~~~~~~~~~-~ 76 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV-----------LGYDVVKEPAK-V 76 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE-----------cCEeCccCHHH-H
Confidence 45668884335677777 46899999999999999999999999999999999852 12111110000 0
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhc-------Cc--hHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVL-------DQ--KDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l-------~~--~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.-...+.||.....|.. ++.+.+ .. ...+++++++++.++|.+..++++++||+|||||++||.||
T Consensus 77 --~~~igy~~~~~~~~~~l---T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 77 --RRRIGYVPQEPSLYPEL---TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred --HhheEEEccCCCCCccc---cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH
Confidence 00122233332222211 222221 11 23456899999999999877899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCC-cEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN-SYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g-~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|++|||||||++|||.++.+++++|++++++| .||+++||.++++..+||+|++|+++
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999886 89999999999999999999999754
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=306.93 Aligned_cols=203 Identities=20% Similarity=0.299 Sum_probs=163.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc-----cC----------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE-----IP---------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~-----~~---------- 411 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.. +.
T Consensus 13 ~~~~~~~-~il~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~ 86 (258)
T PRK11701 13 TKLYGPR-KGCRDVSFDLYPG-----EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRL 86 (258)
T ss_pred EEEcCCc-eeeeeeeEEEeCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHH
Confidence 6777653 4688999998888 78999999999999999999999999999875 222 11
Q ss_pred -cceeEeecCcCC--CCCcCcHHHHHHhhhc--cCC---CCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHH
Q 040300 412 -EFNVSYKPQKIS--PKFQSTVRHLLHQKIR--DSY---THPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 412 -~~~i~y~~q~~~--~~~~~tv~~~~~~~~~--~~~---~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
...++|++|+.. .....|+.+++..... ... .....+.++++.+++. ...++.+.+|||||+|||+|||||
T Consensus 87 ~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral 166 (258)
T PRK11701 87 LRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNL 166 (258)
T ss_pred hhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHH
Confidence 124899999863 2334567665532111 100 1123467889999997 478999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+.+|++|||||||++||+.++..+.+.|+++..+.|.|||+||||++++..+||++++|+++.. ...++++++++
T Consensus 167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i--~~~~~~~~~~~ 241 (258)
T PRK11701 167 VTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV--VESGLTDQVLD 241 (258)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCHHHHhc
Confidence 9999999999999999999999999999998765689999999999999999999999986543 34577777654
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=305.81 Aligned_cols=200 Identities=21% Similarity=0.275 Sum_probs=163.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC-----eeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-----SVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-----~G~i~--~~~~~---------~ 412 (605)
+++|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|+ +|++. +.... .
T Consensus 8 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 81 (247)
T TIGR00972 8 NLFYGEK-EALKNINLDIPKN-----QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELR 81 (247)
T ss_pred EEEECCe-eeecceeEEECCC-----CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHH
Confidence 6677653 4688999998888 789999999999999999999999998 99875 22221 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CC-C---CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SY-T---HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~-~---~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+..... .|+.+++...... .. . ....+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 82 ~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 82 RRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred hheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 35999999876544 8999887532111 11 1 123567889999998 7889999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..++++|+++.+ +.|+|+||||++++..+|||+++|+++.. ...++++++++
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 232 (247)
T TIGR00972 161 VEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGEL--VEYGPTEQIFT 232 (247)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHh
Confidence 99999999999999999999999999999854 48999999999999999999999986543 34577777654
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=310.90 Aligned_cols=206 Identities=23% Similarity=0.321 Sum_probs=166.9
Q ss_pred eeecCCc-----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cc
Q 040300 349 RYKYPTM-----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EF 413 (605)
Q Consensus 349 ~~~y~~~-----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~ 413 (605)
+++|++. ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+. ..
T Consensus 11 ~~~~~~~~~~~~~~vl~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 85 (280)
T PRK13633 11 SYKYESNEESTEKLALDDVNLEVKKG-----EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRN 85 (280)
T ss_pred EEEcCCCCCCCCcceeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhh
Confidence 6777632 23789999999888 78999999999999999999999999999875 22211 23
Q ss_pred eeEeecCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 414 NVSYKPQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 414 ~i~y~~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
.++|+||++. ..+..++.+++...... ... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++
T Consensus 86 ~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l 165 (280)
T PRK13633 86 KAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPEC 165 (280)
T ss_pred heEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 5899999863 23445788876432111 111 124567899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMN 562 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~ 562 (605)
|||||||+|||+.++..+.++|+++.++.|.|||+||||++++.. |||+++|+++.. ...+++++++....
T Consensus 166 lllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i--~~~g~~~~~~~~~~ 236 (280)
T PRK13633 166 IIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKV--VMEGTPKEIFKEVE 236 (280)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEE--EEecCHHHHhcChH
Confidence 999999999999999999999999866568999999999999986 999999986543 35688888876543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=294.59 Aligned_cols=206 Identities=25% Similarity=0.323 Sum_probs=151.9
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
..|++.+|.+ +||.+ ..+++++ .+.+||+++|+|++|+|||||+|+|.|+++|+.|+|.
T Consensus 7 ~~I~vr~v~~--------~fG~~-~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~----------- 66 (263)
T COG1127 7 PLIEVRGVTK--------SFGDR-VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL----------- 66 (263)
T ss_pred ceEEEeeeee--------ecCCE-EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEE-----------
Confidence 3677777655 56554 3455555 3579999999999999999999999999999999985
Q ss_pred hccchhhhhHHHH-HHHHHHHhhcccccccchh-hhhchhh----h--hcCchHHHHHHHHHHhhcCCchh-hcccCCCC
Q 040300 147 FRGSELQNYFTRI-LEDNLKAIIKPQYVDHIPK-AVQGNVG----Q--VLDQKDERDMKADLCTDLDLNQV-IDRNVGDL 217 (605)
Q Consensus 147 ~~g~~l~~~~~~~-~~~~~~~~~~~q~~~~~~~-~~~~~v~----~--~l~~~~~~~~~~~~l~~l~L~~~-~dr~v~~L 217 (605)
+.|.++....... +.-..+..+..|.-..+.. .+..+|. + -+.+...++.+..-++.+||... .++.+++|
T Consensus 67 i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsEL 146 (263)
T COG1127 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSEL 146 (263)
T ss_pred EcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhh
Confidence 2222222211100 0000001111221111111 1112221 1 13445567778888999999876 99999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCcc
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGKP 293 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~~ 293 (605)
||||++|+|||||++.+|+++++||||+||||.+...+-++|++|.+. |.|+++||||++.+..+||++++|+.+.
T Consensus 147 SGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gk 223 (263)
T COG1127 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGK 223 (263)
T ss_pred cchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCE
Confidence 999999999999999999999999999999999999999999999986 9999999999999999999999997543
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=299.88 Aligned_cols=191 Identities=30% Similarity=0.424 Sum_probs=144.8
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|..+..+
T Consensus 3 ~~l~~~~~~~-~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~-----------~g~~~~~~---- 66 (213)
T cd03235 3 EDLTVSYGGH-PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV-----------FGKPLEKE---- 66 (213)
T ss_pred ccceeEECCE-EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE-----------CCccHHHH----
Confidence 4567788653 3566666 46899999999999999999999999999999999852 22211100
Q ss_pred HHHHHHHhhcccccccchhhhhchhhhhc-------------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVL-------------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFA 226 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~~~~~~v~~~l-------------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRva 226 (605)
....++.+|.....+ .+..++.+.+ ......+++.++++.+++.+.+++++.+|||||+||++
T Consensus 67 ---~~~i~~v~q~~~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 142 (213)
T cd03235 67 ---RKRIGYVPQRRSIDR-DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVL 142 (213)
T ss_pred ---HhheEEecccccccc-CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHH
Confidence 001112222111000 0000111110 01223456888999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 227 IA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+||+.+|++|||||||++||+.++..+.++|+++.+++.|||+||||++++..+||++++|++
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 207 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcC
Confidence 99999999999999999999999999999999999987789999999999999999999999975
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=306.58 Aligned_cols=201 Identities=28% Similarity=0.374 Sum_probs=151.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC-CCh---hh-
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP-PDW---QE- 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~-~~~---~~- 142 (605)
+|.|.|..+ +|+.-. .+.+++ .++.||.++|+|||||||||||++|+|++.|+.|.|... ..| ..
T Consensus 2 ~i~i~~~~~--------~~~~~~-a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~ 72 (345)
T COG1118 2 SIRINNVKK--------RFGAFG-ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL 72 (345)
T ss_pred ceeehhhhh--------hccccc-ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc
Confidence 466666554 444321 233444 357999999999999999999999999999999998522 111 11
Q ss_pred -hhhhhccchhhhhHH---HHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCC
Q 040300 143 -ILTYFRGSELQNYFT---RILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLS 218 (605)
Q Consensus 143 -~~~~~~g~~l~~~~~---~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LS 218 (605)
....-.|..+|+|.. ..+.+++....+.+ .........+.++.++|+.+.|+++.+|++.+||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-------------~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLS 139 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-------------KERPSEAEIRARVEELLRLVQLEGLADRYPAQLS 139 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhccccc-------------ccCCChhhHHHHHHHHHHHhcccchhhcCchhcC
Confidence 111222444555431 01222222211111 0111234568899999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 219 GGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||+|||||||||+.+|++|+||||++.||.+-|.++.++|+++.+. |.|+++||||.+++..+||||++|..
T Consensus 140 GGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~ 213 (345)
T COG1118 140 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQ 213 (345)
T ss_pred hHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecC
Confidence 99999999999999999999999999999999999999999999876 99999999999999999999999963
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=308.85 Aligned_cols=197 Identities=20% Similarity=0.264 Sum_probs=159.6
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeecCcCC--CC
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKPQKIS--PK 425 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~q~~~--~~ 425 (605)
..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+||+.. ..
T Consensus 27 ~~l~~vsl~i~~G-----e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (267)
T PRK15112 27 EAVKPLSFTLREG-----QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLN 101 (267)
T ss_pred ceeeeeeEEecCC-----CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcC
Confidence 4688999998888 78999999999999999999999999999875 22211 135999999864 22
Q ss_pred CcCcHHHHHHhhhcc--CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 426 FQSTVRHLLHQKIRD--SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 426 ~~~tv~~~~~~~~~~--~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
...|+.+++...... ... ....+.++++.+++. ...++++.+|||||+|||+||+||+.+|++|||||||++||
T Consensus 102 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 181 (267)
T PRK15112 102 PRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181 (267)
T ss_pred cchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCC
Confidence 345777766432111 111 123567889999994 77889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.++..+.++|+++.++.|.|||+||||++++..+|||+++|+++.. ...++++++.+.
T Consensus 182 ~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 240 (267)
T PRK15112 182 MSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEV--VERGSTADVLAS 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEE--EecCCHHHHhcC
Confidence 99999999999998765589999999999999999999999986543 345677777654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=321.04 Aligned_cols=196 Identities=27% Similarity=0.387 Sum_probs=155.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC-CChhhhh--
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP-PDWQEIL-- 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~-~~~~~~~-- 144 (605)
+|+|.| ++|+|| +...+++++ .+++||++.|+||||||||||||+|||+..|++|+|... .++....
T Consensus 5 ~l~i~~--------v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 5 ALEIRN--------VSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE 75 (352)
T ss_pred eEEEEe--------eeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh
Confidence 677776 456888 446788887 578999999999999999999999999999999988521 1111100
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhhhhc------CchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVGQVL------DQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~~~l------~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
.+-.|..+|+| ..+|.. +..++..-| .+.+.++++.++++.++|+++.+|++++|
T Consensus 76 kR~ig~VFQ~Y------------------ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qL 137 (352)
T COG3842 76 KRPIGMVFQSY------------------ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQL 137 (352)
T ss_pred hcccceeecCc------------------ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhh
Confidence 11124445554 222221 112222111 12345679999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||||+|||||||||+.+|++||||||.|+||.+-|.++...|+++.++ |.|.|+||||.+++..++|||.+|+.
T Consensus 138 SGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~ 212 (352)
T COG3842 138 SGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMND 212 (352)
T ss_pred ChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccC
Confidence 999999999999999999999999999999999999999999999875 99999999999999999999999964
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=299.87 Aligned_cols=195 Identities=27% Similarity=0.355 Sum_probs=141.7
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH-
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL- 160 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~- 160 (605)
++++|+.+...+.+++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|.++..+.....
T Consensus 7 l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~-----------~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 7 VSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI-----------AGEDVNRLRGRQLP 75 (214)
T ss_pred eeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEEcccCCHHHHH
Confidence 3445532222455555 35799999999999999999999999999999999852 2222111100000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.-.-..++.+|.....+. .++.+. .......+++.++++.++|.+.+++.+.+|||||+||++||+||
T Consensus 76 ~~~~~i~~~~q~~~~~~~---~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLLPD---RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred HHHhheEEEecChhhccC---CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 000011122222111110 111111 11123346788999999999889999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+.++..+.++|+++.++++|||+||||++++..+||++++|++
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDD 212 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecC
Confidence 999999999999999999999999999999977789999999999999999999999964
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=295.92 Aligned_cols=185 Identities=26% Similarity=0.340 Sum_probs=153.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C--------ccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P--------EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~--------~~~i 415 (605)
.+.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+ . ...+
T Consensus 5 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 5 SKKFGD-KIILDDLNLTIEKG-----KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred EEEECC-EEEEeceEEEEeCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 667765 34689999999888 78999999999999999999999999999875 2221 1 1359
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|++|+.......|+.+++...... ... ....+.++++.+++.+..++.+.+|||||+||++|||||+.+|++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999987654557999877532111 111 124567899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY 541 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~ 541 (605)
||||++||+.++..+.++|+++.. .+.|+|++|||++++. +||++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 999999999999999999999865 4899999999999774 79999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=284.76 Aligned_cols=201 Identities=21% Similarity=0.280 Sum_probs=172.0
Q ss_pred eeecCCce-eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cc--ccCcceeEeecCcCC
Q 040300 349 RYKYPTMV-KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DV--EIPEFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~-~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~--~~~~~~i~y~~q~~~ 423 (605)
+.+|+... ..+.+++|++.+| |.++++||+||||||||++++|+.+|+.|++. +. .-+...-+.++|+..
T Consensus 10 sl~y~g~~~~~le~vsL~ia~g-----e~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~ 84 (259)
T COG4525 10 SLSYEGKPRSALEDVSLTIASG-----ELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEA 84 (259)
T ss_pred EEecCCcchhhhhccceeecCC-----CEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCc
Confidence 67777532 2688999999998 67999999999999999999999999999885 22 234446789999988
Q ss_pred CCCcCcHHHHHHhhhccC-C---CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 424 PKFQSTVRHLLHQKIRDS-Y---THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~~-~---~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
..+.+++.+|+.....-. . .....+.+.+..+|+++..++++.+|||||||||.|||||+.+|++||||||+++||
T Consensus 85 LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlD 164 (259)
T COG4525 85 LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD 164 (259)
T ss_pred cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHH
Confidence 777889999876533221 1 123467789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCCh
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAP 554 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p 554 (605)
.-.|+.+..+|-++.++.|+.+++||||++++..+|+|++||+++|+.....-+|
T Consensus 165 a~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 165 ALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 9999999999999999999999999999999999999999999988765544444
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=299.43 Aligned_cols=194 Identities=28% Similarity=0.370 Sum_probs=143.5
Q ss_pred CceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 82 DTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 82 ~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
+++++|+.. ...+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|.++.......
T Consensus 4 ~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~ 72 (211)
T cd03225 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV-----------DGKDLTKLSLKE 72 (211)
T ss_pred eEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-----------CCEEcccCCHHH
Confidence 466677642 23455665 45799999999999999999999999999999999852 121111100000
Q ss_pred HHHHHHHhhcccccc-cchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHH
Q 040300 160 LEDNLKAIIKPQYVD-HIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~-~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~ 229 (605)
... ..++.+|... ..+ ..++.+.+ .......++.++++.++|.+.+++++.+|||||+||++||+
T Consensus 73 ~~~--~i~~~~q~~~~~~~---~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 147 (211)
T cd03225 73 LRR--KVGLVFQNPDDQFF---GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAG 147 (211)
T ss_pred HHh--hceEEecChhhhcC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 000 1112222210 011 01111111 11223456788999999998999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 230 aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+.+|++|||||||++||+..+..+.+.|+++.+++.|||+||||++++..+||+|++|..
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999987789999999999999999999999964
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=301.03 Aligned_cols=195 Identities=19% Similarity=0.283 Sum_probs=157.7
Q ss_pred eeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC----Ceeeee--ccccC-----cceeEeecCcCC--CC
Q 040300 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP----DSVEDS--DVEIP-----EFNVSYKPQKIS--PK 425 (605)
Q Consensus 359 l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p----~~G~i~--~~~~~-----~~~i~y~~q~~~--~~ 425 (605)
+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+. ...++|++|+.. ..
T Consensus 2 l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 76 (230)
T TIGR02770 2 VQDLNLSLKRG-----EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFN 76 (230)
T ss_pred ccceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcC
Confidence 56788888888 78999999999999999999999999 899875 22211 236999999864 22
Q ss_pred CcCcHHHHHHhhhcc-CC-C--CHHHHHHHHhhcCCc---hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 426 FQSTVRHLLHQKIRD-SY-T--HPQFVSDVMKPLLIE---QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 426 ~~~tv~~~~~~~~~~-~~-~--~~~~~~~~l~~l~l~---~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
...|+.+++...... .. . ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 77 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L 156 (230)
T TIGR02770 77 PLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL 156 (230)
T ss_pred cccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 236887765322111 11 1 123467899999998 6789999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|+.++..+.+.|+++.++.+.|||++|||++++..+|||+++|+++.. ...++++++...
T Consensus 157 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 216 (230)
T TIGR02770 157 DVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRI--VERGTVKEIFYN 216 (230)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 999999999999998665589999999999999999999999986543 355777777643
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=316.25 Aligned_cols=205 Identities=18% Similarity=0.243 Sum_probs=164.3
Q ss_pred eeecCC---ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC---eeeee--ccccC---------
Q 040300 349 RYKYPT---MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD---SVEDS--DVEIP--------- 411 (605)
Q Consensus 349 ~~~y~~---~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~---~G~i~--~~~~~--------- 411 (605)
++.|+. ....+++++|++.+| |+++|+|+||||||||+++|+|+++|+ +|++. +..+.
T Consensus 19 ~~~~~~~~~~~~~l~~vsl~i~~G-----e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~ 93 (330)
T PRK09473 19 RVTFSTPDGDVTAVNDLNFSLRAG-----ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNK 93 (330)
T ss_pred EEEEecCCCCEEEEeeeEEEEcCC-----CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHH
Confidence 666642 234689999999888 789999999999999999999999996 89875 22221
Q ss_pred --cceeEeecCcCC--CCCcCcHHHHHHhhh--ccCCC---CHHHHHHHHhhcCCch---hhccCcCcCChhHHHHHHHH
Q 040300 412 --EFNVSYKPQKIS--PKFQSTVRHLLHQKI--RDSYT---HPQFVSDVMKPLLIEQ---LMDQEVVNLSGGELQRVALC 479 (605)
Q Consensus 412 --~~~i~y~~q~~~--~~~~~tv~~~~~~~~--~~~~~---~~~~~~~~l~~l~l~~---~~~~~~~~LSGGe~QRvaiA 479 (605)
...|+|++|+.. ....+|+.+++.... ..... ....+.++++.+++.+ ..++++.+|||||+|||+||
T Consensus 94 ~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IA 173 (330)
T PRK09473 94 LRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIA 173 (330)
T ss_pred HhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHH
Confidence 125999999963 334567877653221 11111 1245678899999964 45789999999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 480 LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 480 ~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|||+.+|+|||+||||++||+.++..++++|+++.++.|.|+|+||||+.++.++||||+||.++.. ...+++++++.
T Consensus 174 rAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~i--ve~g~~~~i~~ 251 (330)
T PRK09473 174 MALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRT--MEYGNARDVFY 251 (330)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEECCHHHHHh
Confidence 9999999999999999999999999999999999776799999999999999999999999986554 35578888876
Q ss_pred c
Q 040300 560 G 560 (605)
Q Consensus 560 ~ 560 (605)
.
T Consensus 252 ~ 252 (330)
T PRK09473 252 Q 252 (330)
T ss_pred C
Confidence 4
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=309.63 Aligned_cols=205 Identities=24% Similarity=0.390 Sum_probs=166.6
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCe---eeee--ccccC-------ccee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS---VEDS--DVEIP-------EFNV 415 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~---G~i~--~~~~~-------~~~i 415 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++ |++. +..+. ...+
T Consensus 12 ~~~~~~~~~~~l~~v~l~i~~G-----e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~i 86 (282)
T PRK13640 12 SFTYPDSKKPALNDISFSIPRG-----SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKV 86 (282)
T ss_pred EEEcCCCCccceeeEEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhhe
Confidence 6777642 23688999999888 7899999999999999999999999997 7764 22221 1358
Q ss_pred EeecCcCC-CCCcCcHHHHHHhhhccC-CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 416 SYKPQKIS-PKFQSTVRHLLHQKIRDS-YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 416 ~y~~q~~~-~~~~~tv~~~~~~~~~~~-~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
+|++|+.. ..+..|+.+++....... ... ...+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||
T Consensus 87 g~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~lll 166 (282)
T PRK13640 87 GIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIII 166 (282)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999863 345679999875322111 111 1346778999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||||+|||+.++..+.++|+++.++.|.|||+||||++++. +|||+++|+++.. ...++++++....
T Consensus 167 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i--~~~g~~~~~~~~~ 234 (282)
T PRK13640 167 LDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKL--LAQGSPVEIFSKV 234 (282)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEE--EEeCCHHHHhcCH
Confidence 999999999999999999999986656899999999999985 7999999986543 3567888876653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=297.34 Aligned_cols=193 Identities=30% Similarity=0.384 Sum_probs=143.8
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++++|+.....+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|..+... .
T Consensus 3 ~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~---~ 68 (205)
T cd03226 3 ENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL-----------NGKPIKAK---E 68 (205)
T ss_pred ccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------CCEEhhhH---H
Confidence 356777865123466666 46899999999999999999999999999999999852 12211100 0
Q ss_pred HHHHHHHhhcccccccchhhhhchhhhhcC-----chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLD-----QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~-----~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
.. -...+.+|.... ..+..++.+.+. ......++.++++.++|.+.+++.+.+|||||+||++||+||+.+
T Consensus 69 ~~--~~i~~~~q~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 69 RR--KSIGYVMQDVDY--QLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred hh--cceEEEecChhh--hhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 00 001111221100 000112222111 011235678999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|++|||||||++||+.++..+.++|+++.++|.|||+||||++++..+||++++|+.
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 201 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLAN 201 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999977799999999999999999999999964
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=303.86 Aligned_cols=202 Identities=19% Similarity=0.234 Sum_probs=163.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC-------cce
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP-------EFN 414 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~-------~~~ 414 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+. ...
T Consensus 10 ~~~~~~~-~~l~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14247 10 KVSFGQV-EVLDGVNLEIPDN-----TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRR 83 (250)
T ss_pred EEEECCe-eeeecceeEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhcc
Confidence 6677653 4688999998888 78999999999999999999999984 689875 22211 235
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhc--cCCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIR--DSYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
++|++|+....+..|+.+++..... ..... ...+.++++.+++. +.+++++.+|||||+|||+|||||+.
T Consensus 84 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 163 (250)
T PRK14247 84 VQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF 163 (250)
T ss_pred EEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999765567899998753211 11111 23467789999985 45789999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|++|||||||++||+.++..+.++|+++. + +.|+|++|||++++..+|||+++|+++.. ...++++++.+.
T Consensus 164 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 235 (250)
T PRK14247 164 QPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQI--VEWGPTREVFTN 235 (250)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeE--EEECCHHHHHcC
Confidence 999999999999999999999999999984 3 79999999999999999999999986543 345777777543
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=307.38 Aligned_cols=204 Identities=29% Similarity=0.449 Sum_probs=164.5
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
++.|++ ....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 14 ~~~~~~~~~~il~~isl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v 88 (271)
T PRK13632 14 SFSYPNSENNALKNVSFEINEG-----EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGII 88 (271)
T ss_pred EEEcCCCCccceeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEE
Confidence 677752 234688999998888 78999999999999999999999999999875 22211 2358999
Q ss_pred cCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|+.. ..+..|+.+++...... .+.. ...+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++|||||
T Consensus 89 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (271)
T PRK13632 89 FQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE 168 (271)
T ss_pred EeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99863 34457999987532211 1111 2346788999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+|||+.++..++++|+++.++.+.|+|++|||++++. +|||+++|+++.. ...++++++...
T Consensus 169 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i--~~~g~~~~~~~~ 232 (271)
T PRK13632 169 STSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKL--IAQGKPKEILNN 232 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEE--EEecCHHHHhcC
Confidence 999999999999999999986544589999999999986 7999999986543 345677776554
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=315.29 Aligned_cols=198 Identities=27% Similarity=0.446 Sum_probs=150.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+++||++||+||||||||||+++|+|+++|+.|++. +
T Consensus 7 ~i~i~~l--------~k~~~~~-~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~-----------i 66 (306)
T PRK13537 7 PIDFRNV--------EKRYGDK-LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS-----------L 66 (306)
T ss_pred eEEEEeE--------EEEECCe-EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-----------E
Confidence 5666665 5577643 4566666 4689999999999999999999999999999999874 2
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLS 218 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LS 218 (605)
.|.++...... . ....++.+|.....+. .++.+.+ .....+.++.++++.++|.+.+++++++||
T Consensus 67 ~G~~~~~~~~~-~--~~~ig~v~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 140 (306)
T PRK13537 67 CGEPVPSRARH-A--RQRVGVVPQFDNLDPD---FTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELS 140 (306)
T ss_pred CCEecccchHH-H--HhcEEEEeccCcCCCC---CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCC
Confidence 22222111000 0 0112233333221111 0121111 112334677899999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 219 GGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||+||++||+||+++|++|||||||++||+.++.+++++|++++++|+|||++||+++++..+||+|++|+.+
T Consensus 141 ~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G 214 (306)
T PRK13537 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEG 214 (306)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999877999999999999999999999999743
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=289.87 Aligned_cols=172 Identities=52% Similarity=0.834 Sum_probs=147.0
Q ss_pred CCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 80 DKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 80 ~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
-.+++++||... .+.+...+++||+++|+|+||||||||+|+|+|+++|+.|++. +.|..+
T Consensus 3 ~~~l~~~~~~~~-~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-----------~~g~~i------- 63 (177)
T cd03222 3 YPDCVKRYGVFF-LLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE-----------WDGITP------- 63 (177)
T ss_pred CCCeEEEECCEE-EEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEE-----------ECCEEE-------
Confidence 367889998753 3444435689999999999999999999999999999999984 222110
Q ss_pred HHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
.+.+|.. .|||||+||++||+||+.+|+++|
T Consensus 64 -------~~~~q~~------------------------------------------~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 64 -------VYKPQYI------------------------------------------DLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred -------EEEcccC------------------------------------------CCCHHHHHHHHHHHHHhcCCCEEE
Confidence 0001100 099999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhcCC-cEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCC
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLLRPN-SYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVP 318 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~~~g-~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~ 318 (605)
|||||++||+..+..+.++|+++++++ .|||+||||++++..+||++++|.++++.|+++..|..+++++|.|+++|++
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRGYLI 174 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhHHHHHHHHhhcc
Confidence 999999999999999999999997664 8999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 040300 319 T 319 (605)
Q Consensus 319 ~ 319 (605)
.
T Consensus 175 ~ 175 (177)
T cd03222 175 T 175 (177)
T ss_pred c
Confidence 3
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=334.41 Aligned_cols=202 Identities=19% Similarity=0.265 Sum_probs=167.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 18 ~~~~~~~-~il~~vsl~i~~G-----e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 91 (510)
T PRK15439 18 SKQYSGV-EVLKGIDFTLHAG-----EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLV 91 (510)
T ss_pred EEEeCCc-eeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 7778753 4689999999888 68999999999999999999999999999875 22211 1358999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
+|+.......||.+++.............+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 92 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~L 171 (510)
T PRK15439 92 PQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171 (510)
T ss_pred eccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 99976556679999875432111111345678999999998899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+.+.. ...++++++..
T Consensus 172 D~~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 229 (510)
T PRK15439 172 TPAETERLFSRIRELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTI--ALSGKTADLST 229 (510)
T ss_pred CHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEecChHHcCH
Confidence 99999999999999865 489999999999999999999999986543 24577776654
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=300.03 Aligned_cols=198 Identities=26% Similarity=0.411 Sum_probs=143.3
Q ss_pred CceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH
Q 040300 82 DTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT 157 (605)
Q Consensus 82 ~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~ 157 (605)
+++++|+.. ...+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|..+.....
T Consensus 5 ~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~-----------~g~~~~~~~~ 73 (218)
T cd03255 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV-----------DGTDISKLSE 73 (218)
T ss_pred eeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE-----------CCEehhhcch
Confidence 456677641 23566666 46899999999999999999999999999999999852 2222211100
Q ss_pred HHHHH--HHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHH
Q 040300 158 RILED--NLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 158 ~~~~~--~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~ 229 (605)
..... ....++.+|.....+. .+..++.. . .......+++.++++.+||.+.+++.+.+|||||+||++||+
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 74 KELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHH
Confidence 00000 0011222222111111 11111110 0 011223456788999999999899999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 230 aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+.+|++|||||||++||+..+..+.++|+++.+ .+.|||+||||++++. +||++++|+.
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~ 215 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRD 215 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeC
Confidence 99999999999999999999999999999999987 5899999999999997 9999999964
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=298.13 Aligned_cols=203 Identities=26% Similarity=0.298 Sum_probs=166.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +... ....++|++|+
T Consensus 7 ~~~~~~~-~il~~i~~~i~~G-----e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 7 SKFYGGF-VALDGVSLDIKEG-----EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred EEEeCCe-eeeccceEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 6777653 4689999999888 78999999999999999999999999999875 2221 12469999999
Q ss_pred CCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++....... .. ....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|+++||||||+|
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 76544679988875321111 11 123567789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||+.++..+.++|+++.++.|.|||++|||++++..+|||+++++.+.. ...+++.++..
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~--~~~~~~~~~~~ 220 (232)
T cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKI--QQIGTPEEIYE 220 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EecCCHHHHHh
Confidence 9999999999999998665589999999999999999999999986543 24456665543
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=319.35 Aligned_cols=199 Identities=21% Similarity=0.329 Sum_probs=147.9
Q ss_pred ceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+.+ ...|++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++. +.|.++......
T Consensus 7 lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~-----------i~G~~i~~~~~~ 75 (343)
T TIGR02314 7 ITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI-----------VDGQDLTTLSNS 75 (343)
T ss_pred EEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-----------ECCEECCcCCHH
Confidence 45566421 13566666 4689999999999999999999999999999999985 223222211000
Q ss_pred -HHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 159 -ILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 159 -~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
+........+.+|.....+. .+..++... ......++++.++++.+||.+.+++++.+|||||+|||+|||||
T Consensus 76 ~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL 155 (343)
T TIGR02314 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 00001112333343322221 111122110 12233456788999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|++||||||||+||+.++..++++|+++.++ |.|||+||||++++..+||+|++|+++
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G 217 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNG 217 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999875 899999999999999999999999754
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=282.54 Aligned_cols=204 Identities=24% Similarity=0.285 Sum_probs=170.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----------C----
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----------P---- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----------~---- 411 (605)
..+|+... +++++||+...| +++.|+|.+|||||||||||.=+.+|+.|.|. +..+ +
T Consensus 13 HK~~G~~e-VLKGvSL~A~~G-----dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~ 86 (256)
T COG4598 13 HKRYGEHE-VLKGVSLQANAG-----DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKR 86 (256)
T ss_pred Hhhcccch-hhcceeeecCCC-----CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHH
Confidence 56677643 689999999888 68999999999999999999999999999874 1110 0
Q ss_pred -----cceeEeecCcCCCCCcCcHHHHHHhhhc---cC--CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHH
Q 040300 412 -----EFNVSYKPQKISPKFQSTVRHLLHQKIR---DS--YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481 (605)
Q Consensus 412 -----~~~i~y~~q~~~~~~~~tv~~~~~~~~~---~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~a 481 (605)
+.++++++|+......+||.+++...-. .. ....+.+..+|..+||.+..+.+|..||||||||++||||
T Consensus 87 q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARa 166 (256)
T COG4598 87 QLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARA 166 (256)
T ss_pred HHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHH
Confidence 1147899998777667899988753211 10 1112467789999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|+++|+++|+||||++|||+-.-+++++++++++ .|.|+++|||.|.|+..++.+|+.++.+.. -..|+|++++...
T Consensus 167 LameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~VTHEM~FAR~Vss~v~fLh~G~i--EE~G~P~qvf~nP 243 (256)
T COG4598 167 LAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTHEMGFARDVSSHVIFLHQGKI--EEEGPPEQVFGNP 243 (256)
T ss_pred HhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEEeeehhHHHhhhhheEEeeccee--cccCChHHHhcCC
Confidence 9999999999999999999999999999999976 499999999999999999999999986543 3569999998763
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=294.46 Aligned_cols=186 Identities=20% Similarity=0.229 Sum_probs=156.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|
T Consensus 8 ~~~~~~-~~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 8 ACERDE-RILFSGLSFTLNAG-----ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred EEEECC-EEEEecceEEECCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence 666765 34688999998888 78999999999999999999999999999875 22211 235899999
Q ss_pred cCCCCCcCcHHHHHHhhhcc-CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 421 KISPKFQSTVRHLLHQKIRD-SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
+.......|+.+++...... .......+.++++.+++.+..++++.+|||||+|||+||+||+++|++|||||||++||
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 161 (204)
T PRK13538 82 QPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161 (204)
T ss_pred ccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 86655557999987542211 11234567789999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY 541 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~ 541 (605)
+.++..+.++|+++.+ .+.|+|+||||++++..+.+|++++
T Consensus 162 ~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 162 KQGVARLEALLAQHAE-QGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999854 5899999999999999988899877
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=300.65 Aligned_cols=200 Identities=18% Similarity=0.202 Sum_probs=159.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~--~~~~~--------~~~i~ 416 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+|+|+|++ +|++|++. +.... ...++
T Consensus 7 ~~~~~~-~~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 7 HVSVED-KEILKGVNLTVKKG-----EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred EEEECC-EEEEeccceEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 677765 34688999998888 789999999999999999999995 79999875 22111 12489
Q ss_pred eecCcCCCCCcCcHHHHHHhhhc--cC------CCC---HHHHHHHHhhcCCc-hhhccCcC-cCChhHHHHHHHHHHHc
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIR--DS------YTH---PQFVSDVMKPLLIE-QLMDQEVV-NLSGGELQRVALCLCLG 483 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~--~~------~~~---~~~~~~~l~~l~l~-~~~~~~~~-~LSGGe~QRvaiA~aL~ 483 (605)
|++|+.......|+.+++..... .. ... ...+.++++.+++. ...++++. +|||||||||+|||||+
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 99999766556788887643211 00 010 23467789999997 57788887 59999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh-cCEEEEEeCCcceeeecCChhhh
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL-ADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~-adrviv~~g~~~~~~~~~~p~~~ 557 (605)
.+|++|||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+ |||+++|+++.. ...++++++
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~ 232 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRI--VKSGDVELA 232 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEE--EEecCHHHh
Confidence 99999999999999999999999999999854 589999999999999998 899999986543 234565543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=305.53 Aligned_cols=204 Identities=24% Similarity=0.346 Sum_probs=166.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC--------eeeee--ccccC-------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD--------SVEDS--DVEIP------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~--------~G~i~--~~~~~------- 411 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|+ +|++. +....
T Consensus 8 ~~~~~~~-~il~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (272)
T PRK13547 8 HVARRHR-AILRDLSLRIEPG-----RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRL 81 (272)
T ss_pred EEEECCE-eEEecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHH
Confidence 6667653 4689999999888 789999999999999999999999998 88875 22211
Q ss_pred cceeEeecCcCCCCCcCcHHHHHHhhhcc-----C-CC--CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc
Q 040300 412 EFNVSYKPQKISPKFQSTVRHLLHQKIRD-----S-YT--HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 412 ~~~i~y~~q~~~~~~~~tv~~~~~~~~~~-----~-~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
...++|+||+....+..|+.+++...... . .. ....+.++++.+++....++++.+|||||+|||+|||||+
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 161 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA 161 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 12479999986555678999987432110 0 11 1235678899999999999999999999999999999999
Q ss_pred ---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCCh
Q 040300 484 ---------KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAP 554 (605)
Q Consensus 484 ---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p 554 (605)
.+|++|||||||++||+.++..+.++|+++.++.+.|||+||||++++..+|||+++++++.. ...+++
T Consensus 162 ~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 239 (272)
T PRK13547 162 QLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI--VAHGAP 239 (272)
T ss_pred ccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE--EEecCH
Confidence 499999999999999999999999999998665589999999999999999999999986543 345777
Q ss_pred hhhhcc
Q 040300 555 QSLLTG 560 (605)
Q Consensus 555 ~~~~~~ 560 (605)
+++.+.
T Consensus 240 ~~~~~~ 245 (272)
T PRK13547 240 ADVLTP 245 (272)
T ss_pred HHHcCH
Confidence 777654
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=303.79 Aligned_cols=199 Identities=21% Similarity=0.281 Sum_probs=161.5
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-C----Ceeeee--cc-----------ccCcceeEe
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-P----DSVEDS--DV-----------EIPEFNVSY 417 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-p----~~G~i~--~~-----------~~~~~~i~y 417 (605)
.++++++||++..| |++||+|++||||||+.+.|.|+++ | .+|++. +. .+....|+|
T Consensus 18 v~av~~vs~~i~~G-----E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~m 92 (316)
T COG0444 18 VKAVDGVSFELKKG-----EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAM 92 (316)
T ss_pred EEEEeceeEEEcCC-----cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEE
Confidence 35789999999998 7999999999999999999999998 4 346653 22 122346999
Q ss_pred ecCcCCCC--CcCcHHHHHHhhhccC--C----CCHHHHHHHHhhcCCch---hhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPK--FQSTVRHLLHQKIRDS--Y----THPQFVSDVMKPLLIEQ---LMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~--~~~tv~~~~~~~~~~~--~----~~~~~~~~~l~~l~l~~---~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+||++... .-.|+.+-+...+... . .....+.++|+.++|.+ .++.+|++|||||+|||+||.||+.+|
T Consensus 93 IfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P 172 (316)
T COG0444 93 IFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNP 172 (316)
T ss_pred EEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCC
Confidence 99996432 3346654433222211 1 11346788999999984 789999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+|||.||||++||+..+.+++++|+++.++.|.|+|+||||+..+.++||||+||..+..+ ..|+.++++...
T Consensus 173 ~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV--E~g~~~~i~~~P 245 (316)
T COG0444 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV--EEGPVEEIFKNP 245 (316)
T ss_pred CEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE--EeCCHHHHhcCC
Confidence 9999999999999999999999999998888999999999999999999999999865543 458888887754
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=302.28 Aligned_cols=203 Identities=20% Similarity=0.306 Sum_probs=161.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc-----cC----------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE-----IP---------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~-----~~---------- 411 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.. ..
T Consensus 10 ~~~~~~~-~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 83 (253)
T TIGR02323 10 SKSYGGG-KGCRDVSFDLYPG-----EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRL 83 (253)
T ss_pred EEEeCCc-eEeecceEEEeCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHh
Confidence 6777653 3688999998888 78999999999999999999999999999875 222 11
Q ss_pred -cceeEeecCcCC--CCCcCcHHHHHHhhh--cc--CC-CCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHH
Q 040300 412 -EFNVSYKPQKIS--PKFQSTVRHLLHQKI--RD--SY-THPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 412 -~~~i~y~~q~~~--~~~~~tv~~~~~~~~--~~--~~-~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
...++|++|+.. ..+..++.+++.... .. .. .....+.++++.+++. ...++.+.+|||||+|||+|||||
T Consensus 84 ~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral 163 (253)
T TIGR02323 84 MRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNL 163 (253)
T ss_pred hhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHH
Confidence 124899999853 223346666543211 00 01 1124567889999997 588999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+.+|++|||||||++||+.++..+.++|+++..+.+.|+|+||||++++..+|||+++|+++.. ...++++++.+
T Consensus 164 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i--~~~~~~~~~~~ 238 (253)
T TIGR02323 164 VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV--VESGLTDQVLD 238 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EEECCHHHHhc
Confidence 9999999999999999999999999999998665689999999999999999999999986543 34466666654
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=303.38 Aligned_cols=198 Identities=26% Similarity=0.361 Sum_probs=144.3
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH-H
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR-I 159 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~-~ 159 (605)
+++++|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++.. .|..+...... .
T Consensus 5 ~l~~~~~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~-----------~g~~~~~~~~~~~ 72 (235)
T cd03261 5 GLTKSFGGR-TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI-----------DGEDISGLSEAEL 72 (235)
T ss_pred EEEEEECCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEccccChhhH
Confidence 456677643 3466666 46899999999999999999999999999999999852 22211110000 0
Q ss_pred HHHHHHHhhcccccccchh-hhhchhhh---h---cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 160 LEDNLKAIIKPQYVDHIPK-AVQGNVGQ---V---LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~---l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
..-.....+.+|.....+. .+...+.. . .......+++.++++.++|.+..++++.+|||||+|||+||+||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALA 152 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 0000011222332211111 11111110 0 111223456788999999999899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+|++|||||||++||+.++..+.++|+++.++ ++|||+||||++++..+||++++|..
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~ 212 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYD 212 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999874 89999999999999999999999964
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=307.25 Aligned_cols=202 Identities=20% Similarity=0.298 Sum_probs=160.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----cceeEeecCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----EFNVSYKPQKI 422 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----~~~i~y~~q~~ 422 (605)
++.|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+||+.
T Consensus 13 ~~~~~~~~~il~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~ 87 (272)
T PRK15056 13 TVTWRNGHTALRDASFTVPGG-----SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSE 87 (272)
T ss_pred EEEecCCcEEEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecccc
Confidence 677753334789999999888 78999999999999999999999999999875 22211 23599999986
Q ss_pred CCC--CcCcHHHHHHhhhc------cCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 423 SPK--FQSTVRHLLHQKIR------DSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 423 ~~~--~~~tv~~~~~~~~~------~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
... +..++.+++..... ... .....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||
T Consensus 88 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD 167 (272)
T PRK15056 88 EVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD 167 (272)
T ss_pred ccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 432 23456665432100 000 11234667899999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|||++||+.++..+.++|+++.. .|.|||+||||++++..+||++++++|+. ...++++++++
T Consensus 168 EPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~~~~~~~~d~v~~~~G~i---~~~g~~~~~~~ 230 (272)
T PRK15056 168 EPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLGSVTEFCDYTVMVKGTV---LASGPTETTFT 230 (272)
T ss_pred CCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEECCEE---EeecCHHhccC
Confidence 99999999999999999999864 48999999999999999999998885432 34577777654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=288.44 Aligned_cols=202 Identities=20% Similarity=0.287 Sum_probs=162.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCe-----eeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS-----VEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~-----G~i~--~~~~~---------~ 412 (605)
.+.|++. .+++++++++..+ +++|++||+|||||||||++..+..... |++. +..+. +
T Consensus 14 ~~yYg~~-~aL~~i~l~i~~~-----~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lR 87 (253)
T COG1117 14 NLYYGDK-HALKDINLDIPKN-----KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELR 87 (253)
T ss_pred eEEECch-hhhccCceeccCC-----ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHH
Confidence 7778753 4789999999888 6899999999999999999999987664 6654 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhccC-CCC---HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRDS-YTH---PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~~-~~~---~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
.++|+++|.+.+ |.+|+++++....+.. ..+ .+.+++.|+.-.|+ +.+++++..||||||||+.|||||+.
T Consensus 88 r~vGMVFQkPnP-Fp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv 166 (253)
T COG1117 88 RRVGMVFQKPNP-FPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV 166 (253)
T ss_pred HHheeeccCCCC-CCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc
Confidence 469999999876 5699999986533221 111 23456666666665 46788999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+|+|||||||||+|||.+...+.++|.+|. ..-|||+|||+|..|.+++|+..+|..+.. ...++.+.+++..
T Consensus 167 ~PeVlLmDEPtSALDPIsT~kIEeLi~eLk--~~yTIviVTHnmqQAaRvSD~taFf~~G~L--vE~g~T~~iF~~P 239 (253)
T COG1117 167 KPEVLLMDEPTSALDPISTLKIEELITELK--KKYTIVIVTHNMQQAARVSDYTAFFYLGEL--VEFGPTDKIFTNP 239 (253)
T ss_pred CCcEEEecCcccccCchhHHHHHHHHHHHH--hccEEEEEeCCHHHHHHHhHhhhhhcccEE--EEEcCHHhhhcCc
Confidence 999999999999999999999999999985 378999999999999999999999874443 3457777777753
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=299.46 Aligned_cols=203 Identities=28% Similarity=0.373 Sum_probs=166.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
.+.|+. . .+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....++|++|+
T Consensus 7 ~~~~~~-~-~l~~is~~i~~G-----e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 7 SKDWKE-F-KLKNVSLEVERG-----DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred EEEeCC-c-eeeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 566764 2 588999988888 78999999999999999999999999999875 2221 12369999998
Q ss_pred CCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++....... .. ....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++|||||||++
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 76555679988875321111 11 123467789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+.++..++++|+++..+.+.|+|++|||+.++..+|||+++|+.+.. ...++++++.+.
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 220 (235)
T cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKL--IQVGKPEEVFKK 220 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEecCHHHHHhC
Confidence 9999999999999998665589999999999999999999999986543 345667766554
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=295.99 Aligned_cols=190 Identities=24% Similarity=0.310 Sum_probs=157.0
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cc
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EF 413 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~ 413 (605)
++.|++. ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+. ..
T Consensus 8 ~~~~~~~~~~~~il~~vs~~i~~G-----~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (220)
T TIGR02982 8 NHYYGHGSLRKQVLFDINLEINPG-----EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRR 82 (220)
T ss_pred EEEccCCCcceeEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHh
Confidence 5566531 34688999988888 78999999999999999999999999999875 22211 23
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
.++|++|+.......|+.+++..... .... ....+.++++.+++.+..++.+.+|||||+||++|||||+++|++
T Consensus 83 ~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~i 162 (220)
T TIGR02982 83 NIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKL 162 (220)
T ss_pred heEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 59999999766555799987653211 1111 123567899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||||||+|||+.++..+.++|+++.++.+.|+|++|||++.+ .+||++++|+++
T Consensus 163 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g 217 (220)
T TIGR02982 163 VLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDG 217 (220)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECC
Confidence 9999999999999999999999998765689999999999865 689999999854
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=301.75 Aligned_cols=200 Identities=20% Similarity=0.259 Sum_probs=161.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+++| ++|++. +..+. .
T Consensus 19 ~~~~~~-~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 92 (258)
T PRK14268 19 NLWYGE-KQALKNVSMQIPKN-----SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELR 92 (258)
T ss_pred EEEeCC-eeeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHh
Confidence 667765 34689999999888 78999999999999999999999985 789875 22110 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
..++|++|+.... ..|+.+++...... .... ...+.++++.+++ .+.+++++.+|||||+|||+|||||+.
T Consensus 93 ~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 171 (258)
T PRK14268 93 KNVGMVFQKPNPF-PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV 171 (258)
T ss_pred hhEEEEecCCccC-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 3599999986543 47999887532111 1111 1345678898888 356789999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+|++|||||||++||+.++..++++|+++. + +.|||+||||++++..+|||+++|+++.. ...+++++++.
T Consensus 172 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 242 (258)
T PRK14268 172 KPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLMGEL--IEFGQTRQIFH 242 (258)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhc
Confidence 999999999999999999999999999984 3 79999999999999999999999986543 34577777754
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=299.01 Aligned_cols=191 Identities=27% Similarity=0.367 Sum_probs=142.3
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|.++..... .
T Consensus 5 ~l~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~-----------~g~~~~~~~~--~ 70 (213)
T cd03259 5 GLSKTYGSV-RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI-----------DGRDVTGVPP--E 70 (213)
T ss_pred eeEEEeCCe-eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----------CCEEcCcCch--h
Confidence 456667542 3455565 45899999999999999999999999999999999852 1211111000 0
Q ss_pred HHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.-...+.+|.....+. .++.+. .......+++.++++.++|.+..++++.+|||||+||++||+||
T Consensus 71 --~~~i~~v~q~~~~~~~---~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 71 --RRNIGMVFQDYALFPH---LTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARAL 145 (213)
T ss_pred --hccEEEEcCchhhccC---CcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 0001111221111110 011111 11123345678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+.++..+.++|+++.++ |.|||++|||++++..+||++++|+.
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~ 206 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNE 206 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999764 89999999999999999999999964
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=304.89 Aligned_cols=204 Identities=23% Similarity=0.307 Sum_probs=164.4
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
.++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 14 ~~~~~~~~~~~l~~isl~i~~G-----e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 88 (269)
T PRK13648 14 SFQYQSDASFTLKDVSFNIPKG-----QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIV 88 (269)
T ss_pred EEEcCCCCCcceeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEE
Confidence 6777643 23688999999888 78999999999999999999999999999875 22221 1358999
Q ss_pred cCcCC-CCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 419 PQKIS-PKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 419 ~q~~~-~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+|+.. ..+..++.+++...... ... ....+.++++.+++.+..++.+.+|||||+|||+|||||+.+|++|||||
T Consensus 89 ~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (269)
T PRK13648 89 FQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDE 168 (269)
T ss_pred EeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99864 33456777765432111 111 12346688999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||++||+.++..+.++|+++.++.|.|||+||||++++.. |||+++|+++.. ...++++++.+.
T Consensus 169 Pt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i--~~~g~~~~~~~~ 232 (269)
T PRK13648 169 ATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTV--YKEGTPTEIFDH 232 (269)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEE--EEecCHHHHhcC
Confidence 9999999999999999999866558999999999999986 999999986543 345777777664
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=300.57 Aligned_cols=201 Identities=19% Similarity=0.288 Sum_probs=160.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+.. |++|++. +.... .
T Consensus 13 ~~~~~~~-~il~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 86 (253)
T PRK14242 13 SFFYGDF-QALHDISLEFEQN-----QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELR 86 (253)
T ss_pred EEEECCe-eeecceeEEEeCC-----CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHh
Confidence 7778653 4789999999888 7899999999999999999999975 5889875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCC-C---CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSY-T---HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~-~---~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++..... ... . ....+.++++.+++. ...++++.+|||||+|||+|||||+
T Consensus 87 ~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 165 (253)
T PRK14242 87 RRVGMVFQKPNPF-PKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA 165 (253)
T ss_pred hcEEEEecCCCCC-cCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 3599999986543 4699988753211 111 1 123466788888884 3568899999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++ .+ +.|||+||||++++..+|||+++|+.+.. ...++++++.+.
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 238 (253)
T PRK14242 166 VEPEVLLMDEPASALDPIATQKIEELIHEL-KA-RYTIIIVTHNMQQAARVSDVTAFFYMGKL--IEVGPTEQIFTR 238 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hc-CCeEEEEEecHHHHHHhCCEEEEEECCEE--EEeCCHHHHHcC
Confidence 999999999999999999999999999998 33 78999999999999999999999986543 345777777553
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=294.44 Aligned_cols=188 Identities=25% Similarity=0.306 Sum_probs=156.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----cceeEeecCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----EFNVSYKPQKI 422 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----~~~i~y~~q~~ 422 (605)
+++|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+. ...++|++|..
T Consensus 18 ~~~~~~~-~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~ 91 (214)
T PRK13543 18 AFSRNEE-PVFGPLDFHVDAG-----EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP 91 (214)
T ss_pred EEecCCc-eeeecceEEECCC-----CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCc
Confidence 6777653 4688999998888 78999999999999999999999999999875 22211 22489999986
Q ss_pred CCCCcCcHHHHHHhhhcc-CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040300 423 SPKFQSTVRHLLHQKIRD-SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501 (605)
Q Consensus 423 ~~~~~~tv~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~ 501 (605)
......|+.+++...... .......+.++++.+++.+..++++.+|||||||||+|||+|+.+|++|||||||++||+.
T Consensus 92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (214)
T PRK13543 92 GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171 (214)
T ss_pred ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 554456898876432111 1122345678899999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
++..+.++|+++.+ .+.|+|++|||++++..+|||+++++.
T Consensus 172 ~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 172 GITLVNRMISAHLR-GGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999865 589999999999999999999999863
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=298.44 Aligned_cols=190 Identities=24% Similarity=0.291 Sum_probs=154.9
Q ss_pred eecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeec-C
Q 040300 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKP-Q 420 (605)
Q Consensus 350 ~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~-q 420 (605)
..|+.. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +.... ...++|++ |
T Consensus 29 ~~~~~~-~il~~vs~~i~~G-----e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~ 102 (236)
T cd03267 29 RKYREV-EALKGISFTIEKG-----EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQ 102 (236)
T ss_pred cccCCe-eeeeceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCC
Confidence 345543 3689999999888 78999999999999999999999999999875 21110 23589997 4
Q ss_pred cCCCCCcCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
........|+.+++..... ..... ...+.++++.+++.+..++++.+|||||+||++||+||+.+|++|||||||+
T Consensus 103 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 103 KTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred ccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 4444456789887643211 11111 2345678899999998999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+||+.++..+.++|+++.++.+.|||+||||++++..+||+++++.++.
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 231 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR 231 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999876568999999999999999999999998643
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=301.24 Aligned_cols=203 Identities=17% Similarity=0.218 Sum_probs=162.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC----Ceeeee--cccc-----CcceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP----DSVEDS--DVEI-----PEFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p----~~G~i~--~~~~-----~~~~i~y 417 (605)
+++| + ...+++++|++.+| |+++|+|+||||||||+++|+|+++| ++|++. +..+ ....++|
T Consensus 11 ~~~~-~-~~il~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~ 83 (254)
T PRK10418 11 ALQA-A-QPLVHGVSLTLQRG-----RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIAT 83 (254)
T ss_pred EEEe-c-cceecceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEE
Confidence 6667 2 24688999999888 78999999999999999999999999 899875 2221 1235999
Q ss_pred ecCcCCC--CCcCcHHHHHHhh--hccCCCCHHHHHHHHhhcCCch---hhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 418 KPQKISP--KFQSTVRHLLHQK--IRDSYTHPQFVSDVMKPLLIEQ---LMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 418 ~~q~~~~--~~~~tv~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
++|+... ....|+.+++... ..........+.++++.+++.+ .+++.+.+|||||+|||+|||||+.+|++||
T Consensus 84 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl 163 (254)
T PRK10418 84 IMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFII 163 (254)
T ss_pred EecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998642 2234666654321 1111112356788999999986 5799999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||||++||+.++..+.++|+++.++.|.|||++|||++++..+|||+++++++.. ...++++++...
T Consensus 164 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~~~ 231 (254)
T PRK10418 164 ADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI--VEQGDVETLFNA 231 (254)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEE--EEecCHHHHhhC
Confidence 99999999999999999999998765689999999999999999999999986543 355777776543
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=296.51 Aligned_cols=199 Identities=25% Similarity=0.306 Sum_probs=144.1
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH-H
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR-I 159 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~-~ 159 (605)
+++++|+.....+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|..+...... .
T Consensus 5 ~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~i~~~~~~~~ 73 (214)
T cd03292 5 NVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV-----------NGQDVSDLRGRAI 73 (214)
T ss_pred EEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------CCEEcccCCHHHH
Confidence 45566743223455555 45799999999999999999999999999999999852 22211110000 0
Q ss_pred HHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHcc
Q 040300 160 LEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQ 233 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~ 233 (605)
....-..++.+|.....+. .+..++... .......+++.++++.+||++.+++.+.+|||||+||++||+||+.
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc
Confidence 0000012222332221111 111111100 1112234567889999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 234 NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 234 ~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+|+++||||||++||+.++..+.+.|+++.+++.|||+||||++++..+||++++|++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 211 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALER 211 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999976789999999999999999999999964
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=300.91 Aligned_cols=201 Identities=19% Similarity=0.285 Sum_probs=162.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC-----eeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-----SVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-----~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|+ +|++. +..+. .
T Consensus 14 ~~~~~~~-~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (254)
T PRK14273 14 NLFYTDF-KALNNINIKILKN-----SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELR 87 (254)
T ss_pred EEEeCCc-eeecceeeEEcCC-----CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHh
Confidence 6777653 4689999999888 789999999999999999999999974 78875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++...... .... ...+.++++.+++ .+..++++.+|||||||||+|||||+
T Consensus 88 ~~i~~v~q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~ 166 (254)
T PRK14273 88 RKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA 166 (254)
T ss_pred hceEEEeeccccc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 3599999986543 58999987532111 1111 2346677888887 45678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..++++|+++. + +.|+|++|||++++..+|||+++|+++.. ...+++.++.+.
T Consensus 167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 239 (254)
T PRK14273 167 IEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCI--EEESSTDELFFN 239 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999999999999999999984 3 78999999999999999999999986543 345778877643
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=304.92 Aligned_cols=205 Identities=21% Similarity=0.317 Sum_probs=166.7
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
+++|++. ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +.... ...++|
T Consensus 11 ~~~~~~~~~~~~l~~v~l~i~~G-----e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (277)
T PRK13642 11 VFKYEKESDVNQLNGVSFSITKG-----EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGM 85 (277)
T ss_pred EEEcCCCCcCeeeeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEE
Confidence 6777632 23688999999888 78999999999999999999999999999875 22221 235899
Q ss_pred ecCcCC-CCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKIS-PKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~-~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
++|+.. ..+..|+.+++...... .... ...+.++++.+++.++.++++.+|||||+|||+|||||+.+|++||||
T Consensus 86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllD 165 (277)
T PRK13642 86 VFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILD 165 (277)
T ss_pred EEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999863 34567999887532211 1111 134678899999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|||++||+.++..++++|+++.++.|.|||+||||++++. .|||+++|+.+.. ...+++++++...
T Consensus 166 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i--~~~g~~~~~~~~~ 231 (277)
T PRK13642 166 ESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEI--IKEAAPSELFATS 231 (277)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEE--EEeCCHHHHhcCH
Confidence 9999999999999999999987655899999999999997 5999999986543 3557888876643
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=296.10 Aligned_cols=211 Identities=24% Similarity=0.400 Sum_probs=149.9
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCC-Ch-----hhhhhhhccchhh
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP-DW-----QEILTYFRGSELQ 153 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~-~~-----~~~~~~~~g~~l~ 153 (605)
++++++||+. -.+++++ .+++||++||||||||||||++|+|+|.++|+.|++.... +. .++...--...+|
T Consensus 8 ~~l~k~FGGl-~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ 86 (250)
T COG0411 8 RGLSKRFGGL-TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQ 86 (250)
T ss_pred ccceeecCCE-EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecc
Confidence 4567788875 2466666 4689999999999999999999999999999999985211 00 0000000001112
Q ss_pred h--hHHHH-HHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 154 N--YFTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 154 ~--~~~~~-~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
. .|..+ +-+++..+...+.- ....+. .-...-...+.++++.++|+.+||.+.++++.++||+|||+|+.||||
T Consensus 87 ~~rlF~~lTVlENv~va~~~~~~--~~~~l~-~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArA 163 (250)
T COG0411 87 ITRLFPGLTVLENVAVGAHARLG--LSGLLG-RPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARA 163 (250)
T ss_pred cccccCCCcHHHHHHHHhhhhhh--hhhhhc-cccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHH
Confidence 1 11110 11222221110000 000000 000000123456889999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEe-Ccccc
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY-GKPGA 295 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~-g~~~~ 295 (605)
|+.+|++|+||||.+||.+....++.+.|+++.+. |.||++||||+.++..+||||+||. |+..+
T Consensus 164 La~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred HhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999974 7999999999999999999999994 44333
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=298.60 Aligned_cols=182 Identities=28% Similarity=0.330 Sum_probs=159.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cc---------cc--CcceeEeecCcCCCCCcCcHHHHHHhhhccC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DV---------EI--PEFNVSYKPQKISPKFQSTVRHLLHQKIRDS 441 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~---------~~--~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~ 441 (605)
-++||.|++|||||||+++|+|+.+|++|.|. +. .. .+++|||++|+...+..+||+.|+......
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~- 103 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWK- 103 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcc-
Confidence 48999999999999999999999999999874 11 11 245799999998877788999988644322
Q ss_pred CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q 040300 442 YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521 (605)
Q Consensus 442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 521 (605)
......+++...|||+++++++|.+|||||||||||+|||...|++||||||.|.||..-+.+++-.|+++.++.+..|
T Consensus 104 -~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPI 182 (352)
T COG4148 104 -SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPI 182 (352)
T ss_pred -cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCE
Confidence 2344567899999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred EEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 522 FVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 522 ivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|||.++++.++||+|++|+++.. .+.|..++++..
T Consensus 183 lYVSHS~~Ev~RLAd~vV~le~GkV--~A~g~~e~v~~~ 219 (352)
T COG4148 183 LYVSHSLDEVLRLADRVVVLENGKV--KASGPLEEVWGS 219 (352)
T ss_pred EEEecCHHHHHhhhheEEEecCCeE--EecCcHHHHhcC
Confidence 9999999999999999999997553 466888888775
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=319.79 Aligned_cols=199 Identities=26% Similarity=0.390 Sum_probs=149.2
Q ss_pred eEEEecCCcccCCCceEEe-CCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRY-GPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~y-g~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.|++.|| +++| +. ...|++++ .+.+||+++|+||||||||||+++|+|+++|+.|+|.
T Consensus 3 ~l~i~~l--------~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~----------- 62 (356)
T PRK11650 3 GLKLQAV--------RKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW----------- 62 (356)
T ss_pred EEEEEeE--------EEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE-----------
Confidence 4666664 4566 43 23455565 4579999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChH
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG 220 (605)
+.|.++.+... .....++.+|.....|. .+..++... ........++.++++.++|++++++++.+||||
T Consensus 63 ~~g~~i~~~~~----~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgG 138 (356)
T PRK11650 63 IGGRVVNELEP----ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGG 138 (356)
T ss_pred ECCEECCCCCH----HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHH
Confidence 22222211100 00112223333222221 111122111 112233567889999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 221 e~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+|||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.
T Consensus 139 q~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~ 210 (356)
T PRK11650 139 QRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNG 210 (356)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999875 89999999999999999999999964
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=302.43 Aligned_cols=203 Identities=18% Similarity=0.304 Sum_probs=161.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++ |++|++. +..+. .
T Consensus 20 ~~~~~~~-~il~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~ 93 (269)
T PRK14259 20 TISYGTF-EAVKNVFCDIPRG-----KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVR 93 (269)
T ss_pred EEEECCE-EEEcceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHh
Confidence 7778753 4689999999888 7899999999999999999999987 5889875 22211 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC--HHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH--PQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~--~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..++|+||+... +..|+.+++...... .+.. ...+.++++.+++ .+..++++.+|||||||||+|||||+.+
T Consensus 94 ~~i~~v~q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 172 (269)
T PRK14259 94 RRIGMVFQQPNP-FPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIE 172 (269)
T ss_pred hceEEEccCCcc-chhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence 359999998754 345999987532111 1111 2345667888876 3567899999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC---------CcceeeecCChhh
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG---------QPSVDCVANAPQS 556 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g---------~~~~~~~~~~p~~ 556 (605)
|++|||||||++||+.++..+.++|+++. + +.|||+||||++++..+|||+++|++ ..+.....++|.+
T Consensus 173 p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~ 250 (269)
T PRK14259 173 PEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKK 250 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHH
Confidence 99999999999999999999999999984 3 68999999999999999999999984 2233345677877
Q ss_pred hhcc
Q 040300 557 LLTG 560 (605)
Q Consensus 557 ~~~~ 560 (605)
+++.
T Consensus 251 ~~~~ 254 (269)
T PRK14259 251 IFNS 254 (269)
T ss_pred HHhC
Confidence 7653
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=301.24 Aligned_cols=202 Identities=20% Similarity=0.244 Sum_probs=162.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC-----eeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-----SVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-----~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|+ +|++. +..+. .
T Consensus 11 ~~~~~~-~~~l~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (253)
T PRK14267 11 RVYYGS-NHVIKGVDLKIPQN-----GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84 (253)
T ss_pred EEEeCC-eeeeecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHh
Confidence 677765 34689999999888 789999999999999999999999874 89875 22221 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCC-CC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHH
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSY-TH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~-~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
..++|++|+.......|+.+++..... ... .. ...+.++++.+++. ...++++.+|||||+|||+|||||
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARAL 164 (253)
T ss_pred hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHH
Confidence 359999998765555799988753211 111 11 13456788888874 457899999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.+|++|||||||++||+.++..+.++|+++. + +.|||++|||++++..+|||+++++++.. ...+++++++..
T Consensus 165 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 238 (253)
T PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELK-K-EYTIVLVTHSPAQAARVSDYVAFLYLGKL--IEVGPTRKVFEN 238 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHhhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 99999999999999999999999999999984 3 68999999999999999999999986543 345777777543
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=294.80 Aligned_cols=196 Identities=24% Similarity=0.341 Sum_probs=144.8
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhh--hHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQN--YFTR 158 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~--~~~~ 158 (605)
+++++|+.. ..+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|..+.. ....
T Consensus 5 ~l~~~~~~~-~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~ 72 (213)
T cd03262 5 NLHKSFGDF-HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII-----------DGLKLTDDKKNIN 72 (213)
T ss_pred EEEEEECCe-EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEECCccchhHH
Confidence 456677643 3455665 45899999999999999999999999999999999852 2222110 0000
Q ss_pred HHHHHHHHhhcccccccchh-hhhchhhh------hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 159 ILEDNLKAIIKPQYVDHIPK-AVQGNVGQ------VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~-~~~~~v~~------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
... -..++.+|.....+. .+..++.. .......++++.++++.+|+.+.+++.+.+|||||+||++||+||
T Consensus 73 ~~~--~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 73 ELR--QKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred HHH--hcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 000 112223333222111 11111110 011122345678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+.++..+.+.|+++.+.+.|||++|||++++..+||++++|..
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~ 210 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDD 210 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999987789999999999999999999999964
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=295.50 Aligned_cols=187 Identities=26% Similarity=0.377 Sum_probs=155.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++
T Consensus 14 ~~~~~~~-~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 87 (225)
T PRK10247 14 GYLAGDA-KILNNISFSLRAG-----EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCA 87 (225)
T ss_pred EEeeCCc-eeeeccEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEe
Confidence 6777653 4689999999888 78999999999999999999999999999875 21111 23589999
Q ss_pred CcCCCCCcCcHHHHHHhhh--ccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 420 QKISPKFQSTVRHLLHQKI--RDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
|+... +..|+.+++.... .........+.++++.+++. ...++++.+|||||+|||+|||||+.+|++|||||||+
T Consensus 88 q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (225)
T PRK10247 88 QTPTL-FGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 (225)
T ss_pred ccccc-ccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 98654 4569998874321 11111234567899999996 57899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
+||+.++..+.++|+++.++.|.|||++|||++++. .|||+++|+.
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~ 212 (225)
T PRK10247 167 ALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQP 212 (225)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEec
Confidence 999999999999999987666899999999999996 5999999963
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=303.77 Aligned_cols=197 Identities=23% Similarity=0.378 Sum_probs=160.5
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cceeEeecCcCC
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EFNVSYKPQKIS 423 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~~i~y~~q~~~ 423 (605)
...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|+..
T Consensus 25 ~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~ 99 (268)
T PRK10419 25 QTVLNNVSLSLKSG-----ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSI 99 (268)
T ss_pred eeeEeceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChh
Confidence 34688999999888 78999999999999999999999999999875 22111 235999999863
Q ss_pred --CCCcCcHHHHHHhhhcc--CCC---CHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 424 --PKFQSTVRHLLHQKIRD--SYT---HPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 424 --~~~~~tv~~~~~~~~~~--~~~---~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
.....|+.+++...... ... ....+.++++.+++. ...++++.+|||||+|||+|||||+.+|++|||||||
T Consensus 100 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt 179 (268)
T PRK10419 100 SAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAV 179 (268)
T ss_pred hccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 22346888775321111 111 123567899999997 6889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++||+.++..+.++|+++.++.+.|+|++|||++++..+|||+++|+++.. ...+++.++.+
T Consensus 180 ~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i--~~~g~~~~~~~ 241 (268)
T PRK10419 180 SNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI--VETQPVGDKLT 241 (268)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEE--eeeCChhhccC
Confidence 999999999999999998765689999999999999999999999986543 35577777654
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=297.42 Aligned_cols=195 Identities=24% Similarity=0.333 Sum_probs=144.4
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+...... .
T Consensus 5 ~~~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-----------~g~~~~~~~~~-~ 71 (220)
T cd03265 5 NLVKKYGDF-EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV-----------AGHDVVREPRE-V 71 (220)
T ss_pred EEEEEECCE-EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEecCcChHH-H
Confidence 456677643 3456666 46899999999999999999999999999999999852 12111100000 0
Q ss_pred HHHHHHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
....++.+|.....+. .+...+. .. .......+++.++++.++|++.+++++.+|||||+||++||+||+.+
T Consensus 72 --~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 72 --RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred --hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 0011222232211111 1111111 00 11123456788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|++|||||||++||+..+..+.+.|+++.++ +.|||+||||++++..+||++++|..
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDH 207 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999876 89999999999999999999999964
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=300.42 Aligned_cols=199 Identities=24% Similarity=0.328 Sum_probs=144.0
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH-H
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR-I 159 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~-~ 159 (605)
+++++|+.....+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|.++...... .
T Consensus 5 ~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~~~~~ 73 (241)
T cd03256 5 NLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI-----------DGTDINKLKGKAL 73 (241)
T ss_pred eEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE-----------CCEeccccCHhHH
Confidence 45667764223566666 46899999999999999999999999999999998742 22211110000 0
Q ss_pred HHHHHHHhhcccccccchh-hhhchhh-----------hhc--CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPK-AVQGNVG-----------QVL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRF 225 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~-~~~~~v~-----------~~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRv 225 (605)
....-..++.+|.....+. .+..++. ... ......+++.++++.++|.+.+++.+.+|||||+||+
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHH
Confidence 0000011222222111111 1111110 000 1122345678899999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+||+||+.+|++|||||||++||+..+..+.++|+++.++ |.|||+||||++++..+||++++|+.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 220 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKD 220 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999764 89999999999999999999999964
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=298.42 Aligned_cols=193 Identities=25% Similarity=0.365 Sum_probs=158.3
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeecCcCCCCCcC
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKPQKISPKFQS 428 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~q~~~~~~~~ 428 (605)
.+++++|++.+| |+++|+||||||||||+++|+|+++ .+|++. +..+. ...++|+||+....+..
T Consensus 11 ~l~~vsl~i~~G-----ei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 84 (248)
T PRK03695 11 RLGPLSAEVRAG-----EILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAM 84 (248)
T ss_pred eecceEEEEcCC-----CEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCc
Confidence 578899999888 7899999999999999999999985 489875 22221 12489999987666678
Q ss_pred cHHHHHHhhhccCCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc-------CCCEEEEecCCCCC
Q 040300 429 TVRHLLHQKIRDSYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK-------PADIYLIDEPSAYL 498 (605)
Q Consensus 429 tv~~~~~~~~~~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~-------~p~lllLDEPt~~L 498 (605)
|+.+++......... ....+.++++.+++.+..++++.+|||||+|||+||+||+. +|++|||||||++|
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~L 164 (248)
T PRK03695 85 PVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSL 164 (248)
T ss_pred cHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccC
Confidence 999887532111111 12356789999999999999999999999999999999997 67999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|+.++..+.++|+++.+ .+.|||++|||++++..+||++++|+++.. ...++++++..
T Consensus 165 D~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 222 (248)
T PRK03695 165 DVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKL--LASGRRDEVLT 222 (248)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCHHHHhC
Confidence 99999999999999864 489999999999999999999999986543 34567777654
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=295.49 Aligned_cols=203 Identities=25% Similarity=0.357 Sum_probs=166.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~ 421 (605)
.+.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+||+
T Consensus 7 ~~~~~~~-~il~~is~~i~~G-----e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 7 SKRFGSF-QALDDVNLEVPTG-----SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred EEEECCe-eeeeeEEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 6677653 4689999998888 78999999999999999999999999999875 22211 2359999998
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
.......|+.+++...... ... ....+.++++.+++.+..++.+.+|||||+||++|||||+++|+++||||||++
T Consensus 81 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 7654456998887532211 111 123467889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||+.++..+.++|+++..+.+.|+|++||+++++..+|||+++++++.. ...++++++..
T Consensus 161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i--~~~~~~~~~~~ 220 (237)
T TIGR00968 161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKI--EQIGSPDEVYD 220 (237)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEE--EEecCHHHHHc
Confidence 9999999999999998654589999999999999999999999986553 34567777654
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=300.11 Aligned_cols=203 Identities=17% Similarity=0.293 Sum_probs=161.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +.... .
T Consensus 11 ~~~~~~~-~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~ 84 (258)
T PRK14241 11 NIYYGSF-HAVEDVNLNIEPR-----SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84 (258)
T ss_pred EEEECCE-eeeeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHh
Confidence 6777653 4689999998888 78999999999999999999999975 689875 22211 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc--cCCCC---HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR--DSYTH---PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~~---~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.......|+.+++..... ..... ...+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 85 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (258)
T PRK14241 85 RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA 164 (258)
T ss_pred cceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 359999998765555799998753211 11111 23566788889884 5678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC----CcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG----QPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g----~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||+|||+.++..+.++|+++. + +.|||+||||++++..+|||+++|++ ..+.....++++++++
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 165 VEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFS 242 (258)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHh
Confidence 9999999999999999999999999999984 3 68999999999999999999999962 1122245577777654
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=300.08 Aligned_cols=198 Identities=27% Similarity=0.450 Sum_probs=144.1
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++++|+.. ..+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|..+..+....
T Consensus 4 ~~l~~~~~~~-~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~~~~ 71 (236)
T cd03219 4 RGLTKRFGGL-VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF-----------DGEDITGLPPHE 71 (236)
T ss_pred eeeEEEECCE-EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE-----------CCEECCCCCHHH
Confidence 3456677642 3566666 46899999999999999999999999999999998742 111111100000
Q ss_pred HHHHHHHhhcccccccchh-hhhchhhh---hc------------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPK-AVQGNVGQ---VL------------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQ 223 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~l------------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~Q 223 (605)
.. ....++.+|.....+. .+...+.. .. .......++.++++.+||++.+++++.+|||||+|
T Consensus 72 ~~-~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 72 IA-RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR 150 (236)
T ss_pred HH-hcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence 00 0001112222111111 11111100 00 01223456788999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|++||+||+.+|+++||||||++||+.++..+.++|+++.+.|+|||+||||++++..+||++++|+.
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999987789999999999999999999999964
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=290.06 Aligned_cols=184 Identities=20% Similarity=0.219 Sum_probs=156.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +.... ...++|++|
T Consensus 7 ~~~~~~~-~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 7 TCERDGR-ALFSGLSFTLAAG-----EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred EEEeCCc-eeeccceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 6667653 4688999999888 78999999999999999999999999999875 21111 235899999
Q ss_pred cCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
+....+..|+++++..... ......+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 158 (201)
T cd03231 81 APGIKTTLSVLENLRFWHA--DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158 (201)
T ss_pred ccccCCCcCHHHHHHhhcc--cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 8766556899998753211 12345678899999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY 541 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~ 541 (605)
.++..+.++|+++.. .|.|+|+||||......+++|++++
T Consensus 159 ~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 159 AGVARFAEAMAGHCA-RGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCchhhhhccceeEec
Confidence 999999999999854 4899999999999888899999886
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=331.46 Aligned_cols=202 Identities=18% Similarity=0.237 Sum_probs=166.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+
T Consensus 12 ~~~~~~~-~il~~vs~~i~~G-----e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 85 (510)
T PRK09700 12 GKSFGPV-HALKSVNLTVYPG-----EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85 (510)
T ss_pred EEEcCCe-EEeeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEE
Confidence 6778653 4689999999888 78999999999999999999999999999875 22221 1359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc-----cCC---C---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIR-----DSY---T---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~-----~~~---~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
+|+.......||.+++..... ... . ....+.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 165 (510)
T PRK09700 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK 165 (510)
T ss_pred eecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 998765556799988753211 000 0 12346788999999988999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+|||||||+|||+.++..++++|+++.+ .|+|||+||||++++..+|||+++++++.. ...++++++..
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 234 (510)
T PRK09700 166 VIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSS--VCSGMVSDVSN 234 (510)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE--eeecchhhCCH
Confidence 9999999999999999999999999865 489999999999999999999999986543 34567776644
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=295.51 Aligned_cols=187 Identities=24% Similarity=0.277 Sum_probs=150.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +....+.+..+.....+..
T Consensus 29 ~~~~~~~-~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 29 KGEVGEF-WALKDVSFEVPRG-----ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT---VRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhcCCe-EEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEchhhcccccCCCCC
Confidence 5677663 4789999999888 68999999999999999999999999999875 1111121111222233457
Q ss_pred cHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040300 429 TVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRI 504 (605)
Q Consensus 429 tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~ 504 (605)
|+.+++..... ..... ...+.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||++||+.++.
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~ 179 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQE 179 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 89888753211 11111 234567888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 505 VAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 505 ~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
.+.+.|+++.++ +.|||+||||++++..+|||+++++++.
T Consensus 180 ~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 219 (224)
T cd03220 180 KCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGK 219 (224)
T ss_pred HHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999998654 8999999999999999999999998654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=288.38 Aligned_cols=212 Identities=25% Similarity=0.329 Sum_probs=157.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||.+ .|....-.|.+++ .+.+||+++|||+||||||||||+|+|+..|+.|++..... + +...
T Consensus 3 ~i~~~nl~k--------~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~--~-i~~~ 71 (258)
T COG3638 3 MIEVKNLSK--------TYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGV--Q-ITKL 71 (258)
T ss_pred eEEEeeeee--------ecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEeccc--c-hhcc
Confidence 577777654 6733334566665 45799999999999999999999999999999999853211 0 0011
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhh-hhc-----------hhhhhc--CchHHHHHHHHHHhhcCCchhhccc
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQG-----------NVGQVL--DQKDERDMKADLCTDLDLNQVIDRN 213 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~-----------~v~~~l--~~~~~~~~~~~~l~~l~L~~~~dr~ 213 (605)
.+.++..+ .....+..|....+|+. +.. ++..++ -...++..+-++|+++||.+..-++
T Consensus 72 ~~k~lr~~-------r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr 144 (258)
T COG3638 72 KGKELRKL-------RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR 144 (258)
T ss_pred chHHHHHH-------HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH
Confidence 22222211 11122333443433332 111 111122 2355677889999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.++|||||+|||+|||||+++|+++|.|||+++|||.....+++.|+++.+ +|.|||+.-|+++.+..+||||+-|..+
T Consensus 145 a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G 224 (258)
T COG3638 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224 (258)
T ss_pred hccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCC
Confidence 999999999999999999999999999999999999999999999999986 4999999999999999999999999765
Q ss_pred cccccc
Q 040300 293 PGAYGV 298 (605)
Q Consensus 293 ~~~~g~ 298 (605)
...|..
T Consensus 225 ~ivfDg 230 (258)
T COG3638 225 RIVFDG 230 (258)
T ss_pred cEEEeC
Confidence 555543
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=330.71 Aligned_cols=200 Identities=21% Similarity=0.277 Sum_probs=164.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.... ...++|+
T Consensus 11 ~~~~~~-~~~l~~is~~i~~G-----e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 84 (501)
T PRK10762 11 DKAFPG-VKALSGAALNVYPG-----RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGII 84 (501)
T ss_pred EEEeCC-eEEeeeeeEEEcCC-----eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 677765 34789999999888 78999999999999999999999999999875 22211 1359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc--c--CCCC----HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 419 PQKISPKFQSTVRHLLHQKIR--D--SYTH----PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~--~--~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
+|+.......||.+++..... . .... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 85 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 164 (501)
T PRK10762 85 HQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVII 164 (501)
T ss_pred EcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998765556799998753211 0 0111 2346788999999998999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
|||||++||+.++..++++|+++.. .|.|||+||||++++..+|||+++++++.. ...++++++
T Consensus 165 LDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i--~~~~~~~~~ 228 (501)
T PRK10762 165 MDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDGQF--IAEREVADL 228 (501)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEE--EEecCcCcC
Confidence 9999999999999999999999854 589999999999999999999999986443 234555554
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=300.99 Aligned_cols=200 Identities=18% Similarity=0.253 Sum_probs=160.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+. .
T Consensus 26 ~~~~~~-~~il~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~ 99 (267)
T PRK14235 26 SVFYGE-KQALFDVDLDIPEK-----TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELR 99 (267)
T ss_pred EEEECC-EEEEEEEEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHh
Confidence 777875 34689999999888 78999999999999999999999975 889875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhh--ccCC-C---CHHHHHHHHhhcCCch----hhccCcCcCChhHHHHHHHHHHH
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKI--RDSY-T---HPQFVSDVMKPLLIEQ----LMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~--~~~~-~---~~~~~~~~l~~l~l~~----~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
..++|++|+.... ..|+.+++.... .... . ....+.++++.+++.+ .+++++.+|||||+|||+|||||
T Consensus 100 ~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 178 (267)
T PRK14235 100 ARVGMVFQKPNPF-PKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAI 178 (267)
T ss_pred hceEEEecCCCCC-CCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 3589999986543 459998875321 1100 1 1234577899999953 56889999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+.+|++|||||||++||+.++..+.++|+++. + +.|||+||||++++..+|||+++++++.. ...+++++++.
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 251 (267)
T PRK14235 179 AVSPEVILMDEPCSALDPIATAKVEELIDELR-Q-NYTIVIVTHSMQQAARVSQRTAFFHLGNL--VEVGDTEKMFT 251 (267)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-c-CCeEEEEEcCHHHHHhhCCEEEEEECCEE--EEeCCHHHHHh
Confidence 99999999999999999999999999999984 3 68999999999999999999999986543 34567777654
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=299.81 Aligned_cols=198 Identities=22% Similarity=0.310 Sum_probs=142.3
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH-HHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT-RIL 160 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~-~~~ 160 (605)
++++|+.+...+.+++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|..+..+.. ...
T Consensus 7 l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 7 LSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL-----------EGTDITKLRGKKLR 75 (243)
T ss_pred eeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE-----------CCEEhhhCCHHHHH
Confidence 4445651222455555 35799999999999999999999999999999999852 2222111000 000
Q ss_pred HHHHHHhhcccccccchh-hhhchhh-----------hhc--CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVG-----------QVL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFA 226 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~-----------~~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRva 226 (605)
.-....++.+|.....+. .+..++. ..+ .....++++.++++.++|.+.+++++.+|||||+||++
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 155 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVA 155 (243)
T ss_pred HHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 000112222332221111 1111110 000 01233467888999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 227 IA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+||+.+|++|||||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|..
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 999999999999999999999999999999999999764 89999999999999999999999964
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=288.94 Aligned_cols=169 Identities=25% Similarity=0.344 Sum_probs=140.0
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEeecCcCC-C
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSYKPQKIS-P 424 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y~~q~~~-~ 424 (605)
..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|+.. .
T Consensus 6 ~il~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 6 EVLKGLNFAAERG-----EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ceecceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 4688999999888 78999999999999999999999999999875 22111 135899999863 3
Q ss_pred CCcCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 425 KFQSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
.+..|+.+++..... ..... ...+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||++||+
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 455799988754211 11111 23467889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMA 531 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~ 531 (605)
.++..+.++|+++.+ .|.|||+||||++++
T Consensus 161 ~~~~~~~~~l~~~~~-~~~tili~sH~~~~~ 190 (190)
T TIGR01166 161 AGREQMLAILRRLRA-EGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeeccccC
Confidence 999999999999854 489999999998753
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=294.34 Aligned_cols=196 Identities=23% Similarity=0.249 Sum_probs=143.5
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH-
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL- 160 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~- 160 (605)
++++|......+++++ .+++||++||+|+||||||||+++|+|+++|+.|++.. .|.++........
T Consensus 7 l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~i~~~~~~~~~ 75 (222)
T PRK10908 7 VSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF-----------SGHDITRLKNREVP 75 (222)
T ss_pred eEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEcccCChhHHH
Confidence 4556622223456666 46899999999999999999999999999999999852 2222211100000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.-.-..++.+|.....+. .++.+.+ .......++.++++.+++.+.+++.+.+|||||+||++||+||
T Consensus 76 ~~~~~i~~~~q~~~~~~~---~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 76 FLRRQIGMIFQDHHLLMD---RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred HHHhheEEEecCcccccc---ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 000011222332211111 1121111 1122345677899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|++|||||||++||+.++..+.+.|+++.+++.|||+||||++++..+||++++|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDG 213 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999777899999999999999999999999753
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=293.23 Aligned_cols=180 Identities=23% Similarity=0.289 Sum_probs=150.0
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeecc------ccC-----------cceeEeec
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDV------EIP-----------EFNVSYKP 419 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~------~~~-----------~~~i~y~~ 419 (605)
..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++... ... ...++|++
T Consensus 22 ~il~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 96 (224)
T TIGR02324 22 PVLKNVSLTVNAG-----ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVS 96 (224)
T ss_pred EEEecceEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEe
Confidence 4688999998888 7899999999999999999999999999987511 110 13589999
Q ss_pred CcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 420 QKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
|+.......|+.+++...... ... ....+.++++.+++.+ ..++++.+|||||+|||+|||||+.+|++||||||
T Consensus 97 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 176 (224)
T TIGR02324 97 QFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEP 176 (224)
T ss_pred cccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 997666667998876532111 111 1245677899999986 46889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~ 542 (605)
|++||+.++..+.++|+++.. .|.|+|+||||.+++..+|||++.+.
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 177 TASLDAANRQVVVELIAEAKA-RGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceeEecC
Confidence 999999999999999999854 58999999999999999999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=305.64 Aligned_cols=203 Identities=27% Similarity=0.320 Sum_probs=146.8
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
.|++.|+.+ +|+.....+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|+|..
T Consensus 4 ~l~~~~l~~--------~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~----------- 64 (274)
T PRK13647 4 IIEVEDLHF--------RYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV----------- 64 (274)
T ss_pred eEEEEEEEE--------EeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE-----------
Confidence 577777654 5532222455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccc-cch-hhhhchhhh-----hcCchHHHHHHHHHHhhcCCchhhcccCCCCChH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVD-HIP-KAVQGNVGQ-----VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~-~~~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG 220 (605)
.|..+.......... ...+.+|... .++ ..+..++.. .+.....++++.++++.+||.+.+++.+.+||||
T Consensus 65 ~g~~~~~~~~~~~~~--~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG 142 (274)
T PRK13647 65 MGREVNAENEKWVRS--KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYG 142 (274)
T ss_pred CCEECCCCCHHHHHh--hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHH
Confidence 222111100000000 1111122110 000 011111110 0112233467889999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 221 e~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||++||+||+.+|++|||||||++||+.++.++.++|++++++|.|||++|||++++..+||+|++|+.+
T Consensus 143 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999877999999999999999999999999754
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=299.84 Aligned_cols=200 Identities=20% Similarity=0.270 Sum_probs=161.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--cccc-----C----c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEI-----P----E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~-----~----~ 412 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++ |++|++. +... . .
T Consensus 20 ~~~~~~~-~il~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~ 93 (260)
T PRK10744 20 NFYYGKF-HALKNINLDIAKN-----QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLR 93 (260)
T ss_pred EEEeCCe-EEeeceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHh
Confidence 7778753 4689999999888 7899999999999999999999987 4789875 2221 1 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc--CCCC---HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD--SYTH---PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~--~~~~---~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+... +..|+.+++...... .... ...+.++++.+++. +..++.+.+|||||+|||+|||||+
T Consensus 94 ~~i~~~~q~~~~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 172 (260)
T PRK10744 94 AKVGMVFQKPTP-FPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172 (260)
T ss_pred cceEEEecCCcc-CcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 359999998654 347999887532111 1111 23567788999873 5678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..+.++|+++. + +.|||++|||++++..+|||+++++++.. ...++++++.+
T Consensus 173 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 244 (260)
T PRK10744 173 IRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGEL--IEFGNTDTIFT 244 (260)
T ss_pred CCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHh
Confidence 9999999999999999999999999999984 3 68999999999999999999999986543 34577777654
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=292.91 Aligned_cols=186 Identities=25% Similarity=0.421 Sum_probs=151.3
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
.+.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +.... ...++|+
T Consensus 9 ~~~~~~~~~~~l~~i~~~i~~G-----~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (220)
T cd03245 9 SFSYPNQEIPALDNVSLTIRAG-----EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYV 83 (220)
T ss_pred EEEcCCCCcccccceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEe
Confidence 5667542 23688999999888 68999999999999999999999999999875 22111 1358999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCc-----------CcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEV-----------VNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----------~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
+|+.... ..|+.+++..... ......+.++++.+++.+.+++.+ .+|||||+|||+|||||+.+|+
T Consensus 84 ~q~~~~~-~~tv~e~l~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 84 PQDVTLF-YGTLRDNITLGAP--LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred CCCCccc-cchHHHHhhcCCC--CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9987543 4689888743211 123345567888899988777654 6999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+|||||||+|||+.++..++++|+++.. +.|||+||||++++ .+|||+++++++.
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~g~ 215 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDSGR 215 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeCCe
Confidence 9999999999999999999999999853 48999999999987 6899999998653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=296.40 Aligned_cols=191 Identities=26% Similarity=0.377 Sum_probs=141.1
Q ss_pred CceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH
Q 040300 82 DTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT 157 (605)
Q Consensus 82 ~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~ 157 (605)
+++++|+.. ...+++++ .+.+|+++||+|+||||||||+|+|+|+++|+.|++.. .|.++...
T Consensus 5 ~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~-- 71 (220)
T cd03293 5 NVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV-----------DGEPVTGP-- 71 (220)
T ss_pred EEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEECccc--
Confidence 345566541 23466666 45899999999999999999999999999999999852 11111100
Q ss_pred HHHHHHHHHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 158 RILEDNLKAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 158 ~~~~~~~~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
....++.+|.....+. .+...+. .. +......+++.++++.++|.+.+++.+.+|||||+||++||+||
T Consensus 72 -----~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al 146 (220)
T cd03293 72 -----GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARAL 146 (220)
T ss_pred -----cCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 0001111221111110 0001110 00 11122345678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+.+|++|||||||++||+.++..++++|+++.+ .+.|||+||||++++..+||++++|+
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLS 206 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999865 48999999999999999999999997
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=302.08 Aligned_cols=201 Identities=17% Similarity=0.315 Sum_probs=159.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+.+ |++|++. +.... .
T Consensus 28 ~~~~~~~-~il~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (268)
T PRK14248 28 SIYYGEK-RAVNDISMDIEKH-----AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLR 101 (268)
T ss_pred EEEeCCc-eeeeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 7788753 4689999999888 7899999999999999999999865 6899875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CC-C---CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SY-T---HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~-~---~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+... +..|+.+++...... .. . ....+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 102 ~~i~~v~q~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~ 180 (268)
T PRK14248 102 REIGMVFQKPNP-FPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLA 180 (268)
T ss_pred ccEEEEecCCcc-CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 359999998654 345899887532111 11 1 123456677888874 5678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|++|||||||+|||+.++..+.++|+++. + +.|||++|||++++..+|||+++|+++.. ...++++++++.
T Consensus 181 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~~~ 253 (268)
T PRK14248 181 MKPAVLLLDEPASALDPISNAKIEELITELK-E-EYSIIIVTHNMQQALRVSDRTAFFLNGDL--VEYDQTEQIFTS 253 (268)
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEEeCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999999999999999999984 3 68999999999999999999999986543 345777776553
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=313.52 Aligned_cols=202 Identities=25% Similarity=0.392 Sum_probs=149.1
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.+|++.||.+ +|+.. ..|++++ .+.+|+++||+||||||||||+++|+|+++|+.|++.
T Consensus 40 ~~i~i~nl~k--------~y~~~-~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~----------- 99 (340)
T PRK13536 40 VAIDLAGVSK--------SYGDK-AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT----------- 99 (340)
T ss_pred eeEEEEEEEE--------EECCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEE-----------
Confidence 4688887655 66543 3466666 4579999999999999999999999999999999885
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhh---hhc--CchHHHHHHHHHHhhcCCchhhcccCCCCChH
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVG---QVL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~---~~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG 220 (605)
+.|..+...... . ....++.+|.....+.. +...+. ... .....++++.++++.++|.+.+++++.+||||
T Consensus 100 i~G~~~~~~~~~-~--~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G 176 (340)
T PRK13536 100 VLGVPVPARARL-A--RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGG 176 (340)
T ss_pred ECCEECCcchHH-H--hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHH
Confidence 222221110000 0 00112222221111110 011110 011 11223456778999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 221 e~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||++||+||+++|++|||||||++||+.++.+++++|+++.++|+|||++||+++++..+||+|++|+.+
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G 248 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAG 248 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999877999999999999999999999999643
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=296.50 Aligned_cols=201 Identities=18% Similarity=0.286 Sum_probs=161.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC---CCeeeee--ccccC-------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK---PDSVEDS--DVEIP-------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~---p~~G~i~--~~~~~-------~~~i~ 416 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++ |++|++. +..+. ...++
T Consensus 9 ~~~~~~-~~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 82 (246)
T PRK14269 9 NLFYGK-KQALFDINMQIEQN-----KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG 82 (246)
T ss_pred EEEECC-EeeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEE
Confidence 677875 34689999999888 7899999999999999999999984 6899875 22221 23599
Q ss_pred eecCcCCCCCcCcHHHHHHhh--hccCC----CCHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 417 YKPQKISPKFQSTVRHLLHQK--IRDSY----THPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~--~~~~~----~~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
|+||+... +..|+++++... ..... .....+.++++.+++. +..++.+.+|||||+|||+|||||+.+|
T Consensus 83 ~~~q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 161 (246)
T PRK14269 83 MVFQQPNV-FVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP 161 (246)
T ss_pred EEecCCcc-ccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99998754 346999887432 11111 1123456789999994 4578899999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|||||||++||+.++..+.+.|+++. + +.|+|+||||++++..+|||+++++++.. ...+++.++.+.
T Consensus 162 ~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 231 (246)
T PRK14269 162 KLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGEL--IEFGESKEFFEN 231 (246)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCEE--EEECCHHHHHhC
Confidence 9999999999999999999999999984 3 89999999999999999999999986543 345777776553
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=294.64 Aligned_cols=186 Identities=26% Similarity=0.375 Sum_probs=151.5
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--cceeEeecCcCCCC--CcCcHHHHHHhhhc---cC
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--EFNVSYKPQKISPK--FQSTVRHLLHQKIR---DS 441 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--~~~i~y~~q~~~~~--~~~tv~~~~~~~~~---~~ 441 (605)
+.+||+++|+|+||||||||+++|+|+++|++|++. +.... ...++|++|+.... +..|+.+++..... ..
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 82 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGW 82 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccccc
Confidence 456689999999999999999999999999999885 22111 23599999986542 34688887643211 00
Q ss_pred C-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 040300 442 Y-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 442 ~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 516 (605)
+ .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++.+
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~- 161 (223)
T TIGR03771 83 LRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG- 161 (223)
T ss_pred ccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-
Confidence 0 1123567889999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 517 AKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 517 ~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+.|+|++|||++++..+||++++++|+. ...++++++.+.
T Consensus 162 ~~~tvii~sH~~~~~~~~~d~i~~l~G~i---~~~~~~~~~~~~ 202 (223)
T TIGR03771 162 AGTAILMTTHDLAQAMATCDRVVLLNGRV---IADGTPQQLQDP 202 (223)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEECCEE---EeecCHHHhcCh
Confidence 48999999999999999999999995432 355777777664
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=326.09 Aligned_cols=200 Identities=22% Similarity=0.267 Sum_probs=164.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 5 ~~~~~~-~~il~~vs~~i~~G-----e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 5 SKSFPG-VKALDNVNLKVRPH-----SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred EEEeCC-EEeeeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 677765 34789999999888 68999999999999999999999999999875 22221 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc---cCCCC----HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 419 PQKISPKFQSTVRHLLHQKIR---DSYTH----PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~---~~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|+.......||.+++..... ..... ...+.++++.+++....++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 998765566799998753211 10011 23467889999999889999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
||||+|||+.++..+.++|+++.. .|.|||+||||++++..+|||+++|+++.. ...++++++
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~ 221 (491)
T PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQW--IATQPLAGL 221 (491)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEE--EeecChhhC
Confidence 999999999999999999999854 589999999999999999999999986543 244555554
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=289.64 Aligned_cols=185 Identities=22% Similarity=0.230 Sum_probs=154.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----cceeEeecCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----EFNVSYKPQKI 422 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----~~~i~y~~q~~ 422 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +.... ...++|++|..
T Consensus 9 ~~~~~~~-~~l~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (207)
T PRK13539 9 ACVRGGR-VLFSGLSFTLAAG-----EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRN 82 (207)
T ss_pred EEEECCe-EEEeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCC
Confidence 6677653 4688999999888 78999999999999999999999999999875 22211 23589999876
Q ss_pred CCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040300 423 SPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQ 502 (605)
Q Consensus 423 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~ 502 (605)
...+..|+.+++.............+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||++||+.+
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 162 (207)
T PRK13539 83 AMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162 (207)
T ss_pred cCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 55556799988643211111223457889999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~ 542 (605)
+..+.++|+++.+ .|.|+|+||||++++.. |+++.++
T Consensus 163 ~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 163 VALFAELIRAHLA-QGGIVIAATHIPLGLPG--ARELDLG 199 (207)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEeCCchhhcc--CcEEeec
Confidence 9999999999855 48999999999999986 9998885
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=296.72 Aligned_cols=201 Identities=19% Similarity=0.306 Sum_probs=160.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcC---CCC--Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL---LKP--DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl---~~p--~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+ .+| ++|++. +.... .
T Consensus 10 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14245 10 NFWYGD-FHALKGISMEIEEK-----SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELR 83 (250)
T ss_pred EEEECC-EeEEeeeeEEEeCC-----CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHh
Confidence 667765 34688999999888 78999999999999999999997 454 489875 22211 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCC----CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYT----HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~----~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+.... ..|+.+++...... ... ....+.++++.+++. +.+++++.+|||||+|||+|||||+
T Consensus 84 ~~i~~v~q~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14245 84 KNVGMVFQRPNPF-PKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMA 162 (250)
T ss_pred hheEEEecCCccC-cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 2599999986543 46998877532111 111 123467788989885 4578899999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||+|||+.++..+.++|+++ .+ +.|||+||||++++..+|||+++|+++.. ...++++++.+.
T Consensus 163 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~--~~~~~~~~~~~~ 235 (250)
T PRK14245 163 VSPSVLLMDEPASALDPISTAKVEELIHEL-KK-DYTIVIVTHNMQQAARVSDKTAFFYMGEM--VEYDDTKKIFTN 235 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCHHHHHhhCCEEEEEECCEE--EEECCHHHHhcC
Confidence 999999999999999999999999999998 33 78999999999999999999999986543 355788887654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=308.32 Aligned_cols=192 Identities=25% Similarity=0.406 Sum_probs=143.2
Q ss_pred EeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHH
Q 040300 86 RYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNL 164 (605)
Q Consensus 86 ~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 164 (605)
+|+.. ..|++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++.. .|..+...... .. .
T Consensus 2 ~y~~~-~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~-~~--~ 66 (302)
T TIGR01188 2 VYGDF-KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARV-----------AGYDVVREPRK-VR--R 66 (302)
T ss_pred eeCCe-eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEcccCHHH-HH--h
Confidence 45432 3455555 35799999999999999999999999999999999852 22222110000 00 1
Q ss_pred HHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEE
Q 040300 165 KAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIY 238 (605)
Q Consensus 165 ~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vl 238 (605)
..++.+|.....+. .+...+. .. ......++++.++++.++|.+.+++++.+|||||+||++||+||+++|++|
T Consensus 67 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 146 (302)
T TIGR01188 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVL 146 (302)
T ss_pred hcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 12233333222121 1111111 00 111233457889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 239 MFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 239 llDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||||++||+.++..++++|+++.++|.|||++||+++++..+||+|++|+.+
T Consensus 147 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 147 FLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999877999999999999999999999999643
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=295.32 Aligned_cols=201 Identities=20% Similarity=0.262 Sum_probs=161.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+.+| ++|++. +..+. .
T Consensus 11 ~~~~~~-~~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (251)
T PRK14270 11 NLWYGE-KQALNDINLPIYEN-----KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELR 84 (251)
T ss_pred EEEECC-eeeeeceeEEEcCC-----CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHH
Confidence 667765 34688999998888 78999999999999999999999875 789875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+.... ..|+.+++..... ..... ...+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 85 ~~i~~~~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 163 (251)
T PRK14270 85 KRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA 163 (251)
T ss_pred hheEEEecCCCcC-CCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 3599999987543 4799988753211 11111 23456788888874 4678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||+|||+.++..+.++|+++.+ +.|+|+||||++++..+|||+++++++.. ...++++++.+.
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~~~ 236 (251)
T PRK14270 164 VKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDL--IEFNKTEKIFLE 236 (251)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeE--EEeCCHHHHhcC
Confidence 99999999999999999999999999999854 58999999999999999999999986553 355777777653
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=296.50 Aligned_cols=202 Identities=18% Similarity=0.278 Sum_probs=161.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC--C---Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK--P---DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~--p---~~G~i~--~~~~~---------~ 412 (605)
+++|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+++ | ++|++. +..+. .
T Consensus 11 ~~~~~~-~~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 84 (252)
T PRK14256 11 NVHFGK-NHAVKDVSMDFPEN-----SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84 (252)
T ss_pred EEEeCC-eeEEecceEEEcCC-----CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhh
Confidence 677765 34789999998888 7899999999999999999999986 4 589875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+.......|+.+++..... .... ....+.++++.+++. +.+++.+.+|||||+|||+|||||+
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 164 (252)
T PRK14256 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA 164 (252)
T ss_pred ccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence 359999999765555799988753211 1111 123467788889985 3567899999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++.. +.|||+||||++++..+|||+++|+++.. ...++++++.+.
T Consensus 165 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 237 (252)
T PRK14256 165 VKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDL--VECGETKKIFTT 237 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 99999999999999999999999999999853 58999999999999999999999986543 345777776554
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=296.04 Aligned_cols=198 Identities=21% Similarity=0.355 Sum_probs=143.8
Q ss_pred ceEEeCCCc---eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPNT---FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~~---f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+... ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++. +.|..+......
T Consensus 7 l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-----------~~g~~~~~~~~~ 75 (233)
T cd03258 7 VSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL-----------VDGTDLTLLSGK 75 (233)
T ss_pred ceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-----------ECCEEcccCCHH
Confidence 344564321 3456665 4589999999999999999999999999999999985 222222111000
Q ss_pred HH-HHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 159 IL-EDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 159 ~~-~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.. ...-..++.+|.....+. .+..++.. . .........+.++++.++|.+..++.+.+|||||+||++||+||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (233)
T cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL 155 (233)
T ss_pred HHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 00 000112223333222111 11111110 0 11122345678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++..+||++++|.+
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~ 216 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEK 216 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999875 89999999999999999999999964
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=315.09 Aligned_cols=199 Identities=27% Similarity=0.401 Sum_probs=149.0
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..+++++ .+.+||+++|+||||||||||+++|+|+++|+.|+|..
T Consensus 6 ~l~~~~l--------~~~~~~~-~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~----------- 65 (351)
T PRK11432 6 FVVLKNI--------TKRFGSN-TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFI----------- 65 (351)
T ss_pred EEEEEeE--------EEEECCe-EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEE-----------
Confidence 5666665 4566542 2455555 45899999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++..... .....++.+|.....|. .+..++... .......++++++++.++|.+++++++.+|||||
T Consensus 66 ~g~~i~~~~~----~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq 141 (351)
T PRK11432 66 DGEDVTHRSI----QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQ 141 (351)
T ss_pred CCEECCCCCH----HHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence 2222111000 00111222232222221 111122111 1123345688999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+|||+|||||+.+|++||||||||+||+..|.++.+.|+++.++ |.|+|+||||++++..+||+|++|+.
T Consensus 142 ~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~ 212 (351)
T PRK11432 142 QQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNK 212 (351)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999865 89999999999999999999999974
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=293.47 Aligned_cols=195 Identities=25% Similarity=0.390 Sum_probs=143.2
Q ss_pred ceEEeCCCc---eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPNT---FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~~---f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+... ..+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++. +.|..+......
T Consensus 7 v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-----------~~g~~~~~~~~~ 75 (218)
T cd03266 7 LTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT-----------VDGFDVVKEPAE 75 (218)
T ss_pred EEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEE-----------ECCEEcccCHHH
Confidence 455665420 2455555 3579999999999999999999999999999999985 222222110000
Q ss_pred HHHHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 159 ILEDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
.. -..++.+|.....+. .+...+.. . ........++.++++.+||.+.+++++.+|||||+||++||+||+
T Consensus 76 -~~--~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 152 (218)
T cd03266 76 -AR--RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALV 152 (218)
T ss_pred -HH--hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHh
Confidence 00 011222332211111 11111110 0 111233567888999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+|++|||||||++||+..+..+.++|+++.+++.|||+||||++++..+||++++|+.
T Consensus 153 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~ 211 (218)
T cd03266 153 HDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHR 211 (218)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999999999977789999999999999999999999964
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=308.68 Aligned_cols=201 Identities=25% Similarity=0.416 Sum_probs=147.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++..
T Consensus 4 ~i~~~~l--------~~~~~~~-~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~----------- 63 (303)
T TIGR01288 4 AIDLVGV--------SKSYGDK-VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV----------- 63 (303)
T ss_pred EEEEEeE--------EEEeCCe-EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------
Confidence 4666654 5566643 3466666 46899999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++...... . ....++.+|.....+. .+...+. .. ......+.++.++++.++|.+.+++++.+|||||
T Consensus 64 ~g~~~~~~~~~-~--~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~ 140 (303)
T TIGR01288 64 LGEPVPSRARL-A--RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGM 140 (303)
T ss_pred CCEECcccHHH-H--hhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHH
Confidence 22221110000 0 0111222332211111 1111110 00 1112234567789999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+||++||+||+.+|++|||||||++||+.++..+.++|+++.++|.|||++|||++++..+||++++|+.+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G 211 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESG 211 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999999999999999999643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=271.50 Aligned_cols=182 Identities=24% Similarity=0.294 Sum_probs=157.9
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc-----------cCcceeEeecCcCCC
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE-----------IPEFNVSYKPQKISP 424 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~-----------~~~~~i~y~~q~~~~ 424 (605)
.+++++|.+..| |.++|+||+|||||||+-+|+|+..|++|++. +.. ....++++++|....
T Consensus 25 IL~~V~L~v~~G-----e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~L 99 (228)
T COG4181 25 ILKGVELVVKRG-----ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL 99 (228)
T ss_pred EeecceEEecCC-----ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeec
Confidence 578999999888 79999999999999999999999999999985 221 123469999999877
Q ss_pred CCcCcHHHHHHhhh--cc--CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 425 KFQSTVRHLLHQKI--RD--SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 425 ~~~~tv~~~~~~~~--~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
...+|..||+.... .. .......+.++++.+|+..-++.+|.+||||||||||||||++..|++|+.||||.+||.
T Consensus 100 ip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~ 179 (228)
T COG4181 100 IPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDR 179 (228)
T ss_pred cccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcch
Confidence 77889888875321 11 112235678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
.+-..+.+++-.+.++.|.|.++||||..++.+ |+|++-|..+.
T Consensus 180 ~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~ 223 (228)
T COG4181 180 ATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGR 223 (228)
T ss_pred hHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecce
Confidence 999999999999999999999999999999986 99999998544
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=293.25 Aligned_cols=191 Identities=22% Similarity=0.270 Sum_probs=156.3
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC---CCeeeee--cccc----CcceeE
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK---PDSVEDS--DVEI----PEFNVS 416 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~---p~~G~i~--~~~~----~~~~i~ 416 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+|+|+|+++ |++|++. +... ....++
T Consensus 10 ~~~~~~~~~~~~~l~~vsl~i~~G-----e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~ 84 (226)
T cd03234 10 GLKAKNWNKYARILNDVSLHVESG-----QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA 84 (226)
T ss_pred eeeeecCccccccccCceEEEcCC-----eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEE
Confidence 6667653 34688999998888 7899999999999999999999999 9999875 2222 134699
Q ss_pred eecCcCCCCCcCcHHHHHHhhhc--c-CC-C---CHHHHHH-HHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIR--D-SY-T---HPQFVSD-VMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~--~-~~-~---~~~~~~~-~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
|++|+.......|+.+++..... . .. . ....+.+ .++.+++....++.+.+|||||+|||+|||||+.+|++
T Consensus 85 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~i 164 (226)
T cd03234 85 YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV 164 (226)
T ss_pred EeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCE
Confidence 99998765556799998753211 1 00 1 1122344 88999999889999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH-HHHHhhcCEEEEEeCCc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF-IMATYLADRVIVYEGQP 545 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~-~~~~~~adrviv~~g~~ 545 (605)
|||||||+|||+.++..+.++|+++.+ .+.|+|++||++ +++..+||++++|+++.
T Consensus 165 lllDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~ 221 (226)
T cd03234 165 LILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGE 221 (226)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999854 489999999998 68899999999998654
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=284.57 Aligned_cols=170 Identities=33% Similarity=0.499 Sum_probs=137.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
.++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +....+. ..
T Consensus 6 ~~~~~~-~~~l~~~~~~i~~G-----~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~---~~g~~~~----------~~ 66 (180)
T cd03214 6 SVGYGG-RTVLDDLSLSIEAG-----EIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL---LDGKDLA----------SL 66 (180)
T ss_pred EEEECC-eeeEeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEECC----------cC
Confidence 667765 34688999998887 78999999999999999999999999999874 1111110 00
Q ss_pred cHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040300 429 TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAK 508 (605)
Q Consensus 429 tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~ 508 (605)
...... .. -.++.++++.+++.+..++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+
T Consensus 67 ~~~~~~-~~-------i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~ 138 (180)
T cd03214 67 SPKELA-RK-------IAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138 (180)
T ss_pred CHHHHH-HH-------HhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 111110 00 0112228888999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 509 VIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 509 ~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+|+++..+.+.|+|++|||++++..+|||+++|+++.
T Consensus 139 ~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~ 175 (180)
T cd03214 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGR 175 (180)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999865447899999999999999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=315.13 Aligned_cols=200 Identities=27% Similarity=0.323 Sum_probs=149.5
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCC--ceeeCCCChhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNL--GRFNNPPDWQEIL 144 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~--G~i~~~~~~~~~~ 144 (605)
+.|++.||. ++|+.. ..+.+++ .+.+||+++|+||||||||||+++|+|+++|+. |++..
T Consensus 4 ~~l~~~~l~--------~~~~~~-~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~-------- 66 (362)
T TIGR03258 4 GGIRIDHLR--------VAYGAN-TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAI-------- 66 (362)
T ss_pred eEEEEEEEE--------EEECCe-EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEE--------
Confidence 467777654 466543 3456665 357999999999999999999999999999999 99842
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCC
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLS 218 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LS 218 (605)
.|.++.+... ......+.+|.....|. .+..++... ......+.+++++++.++|++++++++.+||
T Consensus 67 ---~g~~~~~~~~----~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LS 139 (362)
T TIGR03258 67 ---ADRDLTHAPP----HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLS 139 (362)
T ss_pred ---CCEECCCCCH----HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCC
Confidence 2221111000 00011222222222221 111111110 1122345678999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP--NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 219 GGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~--g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||+|||+|||||+.+|++||||||||+||+..+.++.+.|+++.++ |.|+|+||||++++..+||+|++|+.
T Consensus 140 gGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~ 214 (362)
T TIGR03258 140 GGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKD 214 (362)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999876 79999999999999999999999964
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=300.89 Aligned_cols=209 Identities=32% Similarity=0.522 Sum_probs=166.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee-------------ccccC----
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS-------------DVEIP---- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~-------------~~~~~---- 411 (605)
+++|+.....++++++ +.+| |+++|+||||||||||+++|+|+++|++|++. +....
T Consensus 7 ~~~y~~~~~~l~~i~~-i~~G-----e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 7 VHRYGPNSFKLHRLPV-PREG-----QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred ceeecCcchhhhcCCC-CCCC-----CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 6777643335667662 5555 89999999999999999999999999999983 11111
Q ss_pred -----cceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 412 -----EFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 412 -----~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
...++|++|+..... .++.+.+...... ......+.++++.+++.+..++.+.+|||||+|||+|||||+.+|
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIP-KAVKGKVGELLKK-KDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred HhhhcccceeeecchhccCc-hHHHHHHHHHhch-hHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 123678888754432 3444433221111 122345778999999999899999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccccce
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLS 566 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l~ 566 (605)
+++||||||++||+.++..+.++|+++.+ .+.|||+||||++++..+||++++|+|+++..+..+.|..++.+.|.|..
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~~~~~~ad~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLAVLDYLSDYIHCLYGEPGAYGVVTLPKSVREGINEFLD 237 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEECCCCCcceeeecCccHHHHHHHHHh
Confidence 99999999999999999999999999865 48999999999999999999999999988766778889998888777764
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=317.68 Aligned_cols=202 Identities=27% Similarity=0.417 Sum_probs=148.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+++||+++|+||||||||||+|+|+|+++|+.|++..
T Consensus 3 ~L~~~nl--------s~~y~~~-~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l----------- 62 (402)
T PRK09536 3 MIDVSDL--------SVEFGDT-TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV----------- 62 (402)
T ss_pred eEEEeeE--------EEEECCE-EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE-----------
Confidence 4666655 5567643 3456666 45899999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhh-------hhcC--chHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVG-------QVLD--QKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~-------~~l~--~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
.|..+..+....+.. ..++.+|.....+. .+...+. ..+. ....+++++++++.+++.++.++++.+|
T Consensus 63 ~G~~i~~~~~~~~~~--~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~L 140 (402)
T PRK09536 63 AGDDVEALSARAASR--RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSL 140 (402)
T ss_pred CCEEcCcCCHHHHhc--ceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 222221111000000 11122222111000 0111110 0011 2234567899999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||||++|||||+++|++|||||||++||+..+.++.++|+++.+++.|||++|||++++..+||++++|+++
T Consensus 141 SgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 141 SGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999877899999999999999999999999753
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=306.37 Aligned_cols=187 Identities=26% Similarity=0.373 Sum_probs=138.5
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhccc
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQ 171 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q 171 (605)
.|.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|.++.........-.....+.+|
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~~~~~~~ig~v~q 90 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIII-----------DGVDITDKKVKLSDIRKKVGLVFQ 90 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE-----------CCEECCCcCccHHHHhhceEEEec
Confidence 456665 45799999999999999999999999999999999842 222211100000000001122222
Q ss_pred ccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCc--hhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 172 YVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLN--QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 172 ~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~--~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
.... ..+..++.+. +.....++++.++++.+||. +..++++.+|||||+||++||+||+.+|++|||
T Consensus 91 ~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llll 168 (287)
T PRK13637 91 YPEY--QLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILIL 168 (287)
T ss_pred Cchh--ccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2100 0001112111 12223456788999999997 788999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||++||+..+.++.++|+++.++ |.|||+||||++++..+||+|++|+.+
T Consensus 169 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G 221 (287)
T PRK13637 169 DEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221 (287)
T ss_pred ECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999865 899999999999999999999999643
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=334.70 Aligned_cols=204 Identities=20% Similarity=0.256 Sum_probs=165.0
Q ss_pred eeecCC---ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-------------
Q 040300 349 RYKYPT---MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI------------- 410 (605)
Q Consensus 349 ~~~y~~---~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~------------- 410 (605)
++.|+. ....+++++|++.+| |++||+||||||||||+|+|+|+++|++|.+. +..+
T Consensus 19 ~~~y~~~~~~~~~l~~is~~v~~G-----e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~ 93 (623)
T PRK10261 19 NIAFMQEQQKIAAVRNLSFSLQRG-----ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQ 93 (623)
T ss_pred EEEecCCCCceeEEEeeEEEECCC-----CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccC
Confidence 677753 134789999999888 78999999999999999999999999999864 1100
Q ss_pred --------CcceeEeecCcC--CCCCcCcHHHHHHhhhcc--CCC---CHHHHHHHHhhcCCc---hhhccCcCcCChhH
Q 040300 411 --------PEFNVSYKPQKI--SPKFQSTVRHLLHQKIRD--SYT---HPQFVSDVMKPLLIE---QLMDQEVVNLSGGE 472 (605)
Q Consensus 411 --------~~~~i~y~~q~~--~~~~~~tv~~~~~~~~~~--~~~---~~~~~~~~l~~l~l~---~~~~~~~~~LSGGe 472 (605)
....|+|++|++ ......||.+++...... ... ....+.++++.++|. ..+++++.+|||||
T Consensus 94 ~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq 173 (623)
T PRK10261 94 SAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGM 173 (623)
T ss_pred CHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHH
Confidence 012599999986 233447999987542211 111 124567889999995 46899999999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecC
Q 040300 473 LQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVAN 552 (605)
Q Consensus 473 ~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~ 552 (605)
||||+||+||+.+|+||||||||++||+.++..++++|+++.++.|.|||+||||++++..+||||++|+++..+ ..+
T Consensus 174 ~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~--~~g 251 (623)
T PRK10261 174 RQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV--ETG 251 (623)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec--ccC
Confidence 999999999999999999999999999999999999999997666899999999999999999999999865432 457
Q ss_pred Chhhhhc
Q 040300 553 APQSLLT 559 (605)
Q Consensus 553 ~p~~~~~ 559 (605)
++++++.
T Consensus 252 ~~~~~~~ 258 (623)
T PRK10261 252 SVEQIFH 258 (623)
T ss_pred CHHHhhc
Confidence 7777754
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=293.33 Aligned_cols=194 Identities=25% Similarity=0.411 Sum_probs=141.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|.++..+...
T Consensus 5 ~l~~~~~~~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~-----------~g~~~~~~~~~-- 70 (213)
T cd03301 5 NVTKRFGNV-TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI-----------GGRDVTDLPPK-- 70 (213)
T ss_pred eeEEEECCe-eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEECCcCCcc--
Confidence 455666543 2455555 35899999999999999999999999999999998752 11111100000
Q ss_pred HHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
.....+.+|.....+. .+..++.. . ......++++.++++.+|+.+.+++++.+|||||+||++||+||+.+
T Consensus 71 --~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 71 --DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred --cceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 0001111221111110 00011100 0 11223345678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+++||||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|..
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 206 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMND 206 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 9999999999999999999999999999864 89999999999999999999999964
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=327.00 Aligned_cols=203 Identities=20% Similarity=0.300 Sum_probs=163.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeeecc------------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDSDV------------------ 408 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~~~------------------ 408 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|++ +|++|++...
T Consensus 7 ~~~~~~-~~~l~~is~~i~~G-----e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 7 TKKFDG-KEVLKNISFTIEEG-----EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred EEEECC-eEeeeceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 677765 34789999999888 689999999999999999999997 7999987411
Q ss_pred --------------cc---C-------cceeEeecCc-CCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCch
Q 040300 409 --------------EI---P-------EFNVSYKPQK-ISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQ 459 (605)
Q Consensus 409 --------------~~---~-------~~~i~y~~q~-~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~ 459 (605)
.. . ...++|++|+ .......|+.+++...... .... ...+.++++.+++++
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 00 0 1248999997 3333456898877532211 1111 235678999999999
Q ss_pred hhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEE
Q 040300 460 LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 539 (605)
Q Consensus 460 ~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrvi 539 (605)
..++++.+|||||||||+|||||+++|++|||||||++||+.++..++++|+++.++.|.|||+||||++++..+|||++
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~ 240 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 99999999999999999999999999999999999999999999999999999876668999999999999999999999
Q ss_pred EEeCCcceeeecCChhhhhc
Q 040300 540 VYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 540 v~~g~~~~~~~~~~p~~~~~ 559 (605)
+|+++... ..++++++..
T Consensus 241 ~l~~G~i~--~~g~~~~~~~ 258 (520)
T TIGR03269 241 WLENGEIK--EEGTPDEVVA 258 (520)
T ss_pred EEeCCEEe--eecCHHHHHH
Confidence 99864432 3466666544
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=325.54 Aligned_cols=201 Identities=20% Similarity=0.256 Sum_probs=164.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC--Ceeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP--DSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p--~~G~i~--~~~~~--------~~~i~ 416 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++| ++|++. +..+. ...++
T Consensus 12 ~~~~~~-~~il~~isl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (506)
T PRK13549 12 TKTFGG-VKALDNVSLKVRAG-----EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIA 85 (506)
T ss_pred EEEeCC-eEeecceeEEEeCC-----eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeE
Confidence 677865 34789999999988 68999999999999999999999996 799875 22221 13599
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc---C-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEE
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD---S-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIY 489 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~---~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ll 489 (605)
|++|+.......|+.+++...... . .. ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 86 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll 165 (506)
T PRK13549 86 IIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLL 165 (506)
T ss_pred EEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999987655567999987532111 0 11 1235678999999998899999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhh
Q 040300 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 490 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++++++.. ...++++++.
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~ 231 (506)
T PRK13549 166 ILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRH--IGTRPAAGMT 231 (506)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEE--eeecccccCC
Confidence 99999999999999999999999854 589999999999999999999999986543 3445665553
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=293.26 Aligned_cols=199 Identities=21% Similarity=0.338 Sum_probs=155.5
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C----cceeEee
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P----EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~----~~~i~y~ 418 (605)
.+.|+. ....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... + ...++|+
T Consensus 7 ~~~~~~~~~~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (237)
T cd03252 7 RFRYKPDGPVILDNISLRIKPG-----EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVV 81 (237)
T ss_pred EEecCCCCccceeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEE
Confidence 566753 234688999999888 78999999999999999999999999999875 2111 1 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHH---------HHHHhhc--CCchhhccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFV---------SDVMKPL--LIEQLMDQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~---------~~~l~~l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||+... +..|+.+++...... . ..... .++++.+ ++...+++++.+|||||||||+|||||+.+|+
T Consensus 82 ~q~~~~-~~~tv~~nl~~~~~~-~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 82 LQENVL-FNRSIRDNIALADPG-M-SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred cCCchh-ccchHHHHhhccCCC-C-CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 998654 467999887532111 1 11111 2233444 55556678899999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||++||+.++..+.++|+++. + |.|||++|||++++. .||++++|+++.. ...+++++++..
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~~G~i--~~~~~~~~~~~~ 226 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVMEKGRI--VEQGSHDELLAE 226 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEE--EEEcCHHHHHhc
Confidence 999999999999999999999999984 3 899999999999996 5999999986543 345777777654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=290.64 Aligned_cols=192 Identities=26% Similarity=0.413 Sum_probs=142.5
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|..+... .
T Consensus 5 ~l~~~~~~~-~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~----~ 68 (210)
T cd03269 5 NVTKRFGRV-TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF-----------DGKPLDIA----A 68 (210)
T ss_pred EEEEEECCE-EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCCchhHH----H
Confidence 455666542 3455555 45799999999999999999999999999999999852 12111100 0
Q ss_pred HHHHHHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
.....+.+|.....+. .+...+. .. .......+.+.++++.+++.+.+++++.+|||||+||++||+||+.+
T Consensus 69 --~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 69 --RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred --HccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 0011112222111110 0111110 00 11123346788899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+++||||||++||+.++..+.+.|+++.+++.|||++|||++++..+||++++|..
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 203 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNK 203 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeC
Confidence 999999999999999999999999999977789999999999999999999999964
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=290.71 Aligned_cols=191 Identities=24% Similarity=0.331 Sum_probs=144.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|.++... .. .
T Consensus 5 ~l~~~~~~~-~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~-~~-~ 70 (208)
T cd03268 5 DLTKTYGKK-RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF-----------DGKSYQKN-IE-A 70 (208)
T ss_pred EEEEEECCe-EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE-----------CCCcccch-HH-H
Confidence 456677543 3455565 45799999999999999999999999999999999852 22222111 00 0
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcC-----chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLD-----QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~-----~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
. -..++.+|.....+. .++.+.+. .....+++.++++.++|.+.+++++.+|||||+|||+||+||+.+|
T Consensus 71 ~--~~i~~~~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 71 L--RRIGALIEAPGFYPN---LTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred H--hhEEEecCCCccCcc---CcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 0 012223332211111 12222110 0012456788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++|||||||++||+.++..+.++|+++.+++.|||+||||++++..+||++++|..
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 201 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINK 201 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999999987789999999999999999999999964
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=298.37 Aligned_cols=193 Identities=24% Similarity=0.325 Sum_probs=141.2
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++... |.++......
T Consensus 8 l~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~-----------g~~~~~~~~~--- 72 (239)
T cd03296 8 VSKRFGDF-VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG-----------GEDATDVPVQ--- 72 (239)
T ss_pred EEEEECCE-EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC-----------CEECCcCCcc---
Confidence 45566542 3466666 468999999999999999999999999999999987421 1111100000
Q ss_pred HHHHHhhcccccccchh-hhhchhhh---hc------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 162 DNLKAIIKPQYVDHIPK-AVQGNVGQ---VL------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~-~~~~~v~~---~l------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.-..++.+|.....+. .+..++.. .. ......+++.++++.++|.+..++++.+|||||+||++||+||
T Consensus 73 -~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 73 -ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred -ccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 0001112222111110 01111100 00 1112245678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+..+..+.++|++++++ |+|||+||||++++..+||++++|..
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~ 212 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNK 212 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999875 89999999999999999999999964
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=296.97 Aligned_cols=201 Identities=22% Similarity=0.332 Sum_probs=160.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC--C---Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK--P---DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~--p---~~G~i~--~~~~~---------~ 412 (605)
++.|+.. ..+++++|++.+| |+++|+||||||||||+++|+|+++ | ++|++. +.... .
T Consensus 19 ~~~~~~~-~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 92 (259)
T PRK14274 19 NLWYGQH-HALKNINLSIPEN-----EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELR 92 (259)
T ss_pred EEEECCe-eeEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHh
Confidence 6777653 4789999998888 7899999999999999999999997 3 589874 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+.... ..|+.+++...... .... ...+.++++.+++. +.+++++.+|||||+|||+|||||+
T Consensus 93 ~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~ 171 (259)
T PRK14274 93 KNIGMVFQKGNPF-PQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA 171 (259)
T ss_pred hceEEEecCCccc-ccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 3599999986544 35999887432111 1111 13356678888884 4578999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++. + +.|+|+||||++++..+|||+++|+++.. ...++|++++..
T Consensus 172 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 244 (259)
T PRK14274 172 TNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYMGEL--VECNDTNKMFSN 244 (259)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEE--EEECCHHHHhhC
Confidence 9999999999999999999999999999984 3 78999999999999999999999986543 355788887653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=290.66 Aligned_cols=194 Identities=26% Similarity=0.339 Sum_probs=140.7
Q ss_pred ceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+.. ...+.+++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|.++..+...
T Consensus 7 v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-----------~g~~~~~~~~~ 75 (221)
T TIGR02211 7 LGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF-----------NGQSLSKLSSN 75 (221)
T ss_pred eeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEEhhhcCHh
Confidence 44556431 12455555 35799999999999999999999999999999999852 22222111000
Q ss_pred HHHH--HHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHH
Q 040300 159 ILED--NLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAI 227 (605)
Q Consensus 159 ~~~~--~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaI 227 (605)
.... ....++.+|.....+. .++.+. +......+++.++++.+||.+.+++.+.+|||||+||++|
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~---~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 152 (221)
T TIGR02211 76 ERAKLRNKKLGFIYQFHHLLPD---FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAI 152 (221)
T ss_pred HHHHHHHhcEEEEecccccCCC---CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 0000 0011222332111111 112111 1112234567889999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+||+.+|++|||||||++||+.++..+.+.|+++.++ +.|||+||||++++.. +|++++|.+
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~ 216 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKD 216 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeC
Confidence 99999999999999999999999999999999999764 8999999999999976 799999964
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=295.07 Aligned_cols=201 Identities=20% Similarity=0.278 Sum_probs=159.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CC---Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KP---DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p---~~G~i~--~~~~~---------~ 412 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+. +| ++|++. +.... .
T Consensus 12 ~~~~~~~-~~l~~~s~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14239 12 SVYYNKK-KALNSVSLDFYPN-----EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLR 85 (252)
T ss_pred EEEECCe-eeeeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhh
Confidence 6777653 4688999998888 789999999999999999999985 46 489875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+... +..|+.+++..... ..... ...+.++++.+++. +..++.+.+|||||+|||+|||||+
T Consensus 86 ~~i~~v~q~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14239 86 KEIGMVFQQPNP-FPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA 164 (252)
T ss_pred hcEEEEecCCcc-CcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 359999998754 34799988753211 11111 23456678888863 4678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||+|||+.++..+.++|+++. + +.|||+||||++++..+|||+++|+++.. ...+++.++.+.
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 237 (252)
T PRK14239 165 TSPKIILLDEPTSALDPISAGKIEETLLGLK-D-DYTMLLVTRSMQQASRISDRTGFFLDGDL--IEYNDTKQMFMN 237 (252)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-CCeEEEEECCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999999999999999999984 3 68999999999999999999999986543 355777777553
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=314.36 Aligned_cols=200 Identities=26% Similarity=0.350 Sum_probs=150.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.. ..+++++ .+.+||+++|+|||||||||||++|+|+++|+.|++..
T Consensus 4 ~l~~~~l~--------~~~~~~-~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i----------- 63 (353)
T TIGR03265 4 YLSIDNIR--------KRFGAF-TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQ----------- 63 (353)
T ss_pred EEEEEEEE--------EEeCCe-EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEE-----------
Confidence 57777654 466542 2355555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|..+.+... ..-..++.+|.....|. .+..++... +.....+.+++++++.++|++++++++.+|||||
T Consensus 64 ~g~~~~~~~~----~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq 139 (353)
T TIGR03265 64 GGRDITRLPP----QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQ 139 (353)
T ss_pred CCEECCCCCH----HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHH
Confidence 2222211100 00112233333333332 111222111 1123345688999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ +.|+|+||||++++..+||+|++|+.+
T Consensus 140 ~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G 211 (353)
T TIGR03265 140 QQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHG 211 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999775 899999999999999999999999743
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=294.95 Aligned_cols=198 Identities=22% Similarity=0.389 Sum_probs=144.0
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|..+........
T Consensus 5 ~l~~~~~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~~ 72 (232)
T cd03218 5 NLSKRYGKR-KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL-----------DGQDITKLPMHKR 72 (232)
T ss_pred EEEEEeCCE-EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEecccCCHhHH
Confidence 456677543 3466666 46899999999999999999999999999999998742 1211111000000
Q ss_pred HHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
. .....+.+|.....+. .+..++.. . ........++.++++.+++.+.+++.+.+|||||+||++||+||+.+
T Consensus 73 ~-~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 73 A-RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred H-hccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 0 0001122222111111 11111110 0 01122345678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|++|||||||++||+.++..+.++|+++.+++.|||++|||++++..+||++++|+++
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 209 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEG 209 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999877899999999999999999999999753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=302.49 Aligned_cols=195 Identities=21% Similarity=0.293 Sum_probs=144.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|..+..+.....
T Consensus 29 ~~~~~~~~~-~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i-----------~g~~~~~~~~~~~ 96 (269)
T cd03294 29 EILKKTGQT-VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI-----------DGQDIAAMSRKEL 96 (269)
T ss_pred hhhhhcCCc-eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-----------CCEEccccChhhh
Confidence 566777764 2466666 46899999999999999999999999999999998742 2222111100000
Q ss_pred HH--HHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHH
Q 040300 161 ED--NLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 161 ~~--~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~ 229 (605)
.. .-...+.+|.....+. .++.+.+ ......+++.++++.++|.+.+++.+.+|||||+||++||+
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAr 173 (269)
T cd03294 97 RELRRKKISMVFQSFALLPH---RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLAR 173 (269)
T ss_pred hhhhcCcEEEEecCcccCCC---CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHH
Confidence 00 0011222222111111 1121111 11223456788999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 230 aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+.+|++|||||||++||+.++..+.++|+++.++ |.|||++|||++++..+||++++|+.
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~ 236 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKD 236 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999764 89999999999999999999999964
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=295.28 Aligned_cols=200 Identities=21% Similarity=0.298 Sum_probs=160.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
+++|+. ...+++++|++.+| |+++|+|+||||||||+++|+|+++ |++|++. +.... .
T Consensus 11 ~~~~~~-~~~l~~~sl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~ 84 (251)
T PRK14251 11 HLSYGN-YEALHGISLDFEEK-----ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELR 84 (251)
T ss_pred EEEECC-eeeeeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhh
Confidence 677765 34688999998888 7899999999999999999999997 4789875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+... +..|+++++..... ..... ...+.++++.+++. ..+++++.+|||||+||++|||||+
T Consensus 85 ~~i~~~~q~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~ 163 (251)
T PRK14251 85 KEVGMVFQQPTP-FPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA 163 (251)
T ss_pred ccEEEEecCCcc-CCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence 359999998654 45799998753211 11111 23456788888884 5678899999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..+.+.|+++. + +.|||+||||++++..+|||+++|+++.. ...++++++..
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 235 (251)
T PRK14251 164 VRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTFIMVTHNLQQAGRISDQTAFLMNGDL--IEAGPTEEMFI 235 (251)
T ss_pred cCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEEEECCEE--EEeCCHHHHHh
Confidence 9999999999999999999999999999984 3 68999999999999999999999986543 34577777654
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=278.41 Aligned_cols=157 Identities=34% Similarity=0.479 Sum_probs=135.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|
T Consensus 7 ~~~~~~~-~~l~~~~~~i~~G-----e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 7 SKRYGKK-TALDDISLTVEKG-----EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred EEEECCe-eeeeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 5667653 4688999998888 78999999999999999999999999999875 22111 235899999
Q ss_pred cCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
+.......|+.+++. |||||+|||+|||||+.+|++|||||||++||+
T Consensus 81 ~~~~~~~~tv~~~~~--------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 128 (173)
T cd03230 81 EPSLYENLTVRENLK--------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDP 128 (173)
T ss_pred CCccccCCcHHHHhh--------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 876544567777652 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
.++..+.++|+++.++ |.|+|++|||.+++..+||++++|+.+
T Consensus 129 ~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g 171 (173)
T cd03230 129 ESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCC
Confidence 9999999999998654 899999999999999999999999853
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=293.56 Aligned_cols=201 Identities=20% Similarity=0.302 Sum_probs=159.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+.+| ++|++. +.... .
T Consensus 10 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14240 10 DLFYGDF-QALKKINLDIEEN-----QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLR 83 (250)
T ss_pred EEEECCc-eeeecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHh
Confidence 6777653 4688999998888 78999999999999999999999863 689875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCC----CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYT----HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~----~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++..... .... ....+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 84 ~~i~~~~q~~~~~-~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14240 84 KRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALA 162 (250)
T ss_pred ccEEEEecCCccC-cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence 3589999986543 4799887753211 1111 123466778888764 4578999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++. + +.|||+||||++++..+|||+++++++.. ...+++.++...
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~~~ 235 (250)
T PRK14240 163 VEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEI--VEFGDTVDLFTN 235 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999999999999999999983 3 78999999999999999999999986543 345777776543
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=295.43 Aligned_cols=200 Identities=20% Similarity=0.299 Sum_probs=158.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+.+ |++|++. +..+. .
T Consensus 12 ~~~~~~-~~~l~~is~~i~~G-----e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 12 NLWYGS-KQILFDINLDIYKR-----EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEEECC-eeeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 667764 34688999998888 7899999999999999999999986 4689875 22110 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhh--hccCCC----CHHHHHHHHhhcCCch----hhccCcCcCChhHHHHHHHHHHH
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQK--IRDSYT----HPQFVSDVMKPLLIEQ----LMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~--~~~~~~----~~~~~~~~l~~l~l~~----~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
..++|+||+.... ..|+.+++... ...... ....+.++++.+++.+ ..++.+.+|||||+|||+|||||
T Consensus 86 ~~i~~v~q~~~~~-~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 86 AKVGMVFQKPNPF-PKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhEEEEecCcccc-cCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 3589999986543 35888876432 111111 1234567889999864 56789999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+.+|++|||||||++||+.++..+.++|+++ .+ +.|||+||||++++..+|||+++|+.+.. ...+++.+++.
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 237 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQEL-KK-NFTIIVVTHSMKQAKKVSDRVAFFQSGRI--VEYNTTQEIFK 237 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCHHHHHhhcCEEEEEECCEE--EEeCCHHHHhc
Confidence 9999999999999999999999999999998 33 89999999999999999999999986543 34567776654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=325.52 Aligned_cols=198 Identities=23% Similarity=0.261 Sum_probs=161.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.... ...++|++
T Consensus 10 ~~~~~~~-~il~~vsl~i~~G-----e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 83 (490)
T PRK10938 10 TFRLSDT-KTLQLPSLTLNAG-----DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEW 83 (490)
T ss_pred EEEcCCe-eecccceEEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceec
Confidence 7778653 4789999999888 68999999999999999999999999999875 21111 12389999
Q ss_pred CcCCCC--------CcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 420 QKISPK--------FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 420 q~~~~~--------~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
|+.... +..++.+++... ......+.++++.+++.+..++++.+|||||||||+||+||+.+|++|||
T Consensus 84 q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (490)
T PRK10938 84 QRNNTDMLSPGEDDTGRTTAEIIQDE----VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLIL 159 (490)
T ss_pred cCcchhhcccchhhccccHHHhcccc----hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 975321 134666654211 11234567899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
||||++||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+++.. ...++++++.+
T Consensus 160 DEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~~~~~~ 224 (490)
T PRK10938 160 DEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRFDEIPDFVQFAGVLADCTL--AETGEREEILQ 224 (490)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEE--EEeCCHHHHhc
Confidence 999999999999999999999865 489999999999999999999999986543 34467776654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=327.01 Aligned_cols=204 Identities=19% Similarity=0.269 Sum_probs=162.2
Q ss_pred eeecCC---ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--cccc--------
Q 040300 349 RYKYPT---MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEI-------- 410 (605)
Q Consensus 349 ~~~y~~---~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~-------- 410 (605)
+++|++ ....+++++|++.+| |+++|+||||||||||+|+|+|+++| ++|++. +..+
T Consensus 12 ~~~~~~~~~~~~~l~~isl~i~~G-----e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 86 (529)
T PRK15134 12 SVAFRQQQTVRTVVNDVSLQIEAG-----ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTL 86 (529)
T ss_pred EEEecCCCCceeeeeceEEEEeCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHH
Confidence 677753 134789999999888 78999999999999999999999987 789874 2111
Q ss_pred ---CcceeEeecCcCC--CCCcCcHHHHHHhhh--ccCCC---CHHHHHHHHhhcCCch---hhccCcCcCChhHHHHHH
Q 040300 411 ---PEFNVSYKPQKIS--PKFQSTVRHLLHQKI--RDSYT---HPQFVSDVMKPLLIEQ---LMDQEVVNLSGGELQRVA 477 (605)
Q Consensus 411 ---~~~~i~y~~q~~~--~~~~~tv~~~~~~~~--~~~~~---~~~~~~~~l~~l~l~~---~~~~~~~~LSGGe~QRva 477 (605)
....++|++|+.. .....++.+++.... ..... ....+.++++.+++.+ ..++++.+|||||||||+
T Consensus 87 ~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~ 166 (529)
T PRK15134 87 RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVM 166 (529)
T ss_pred HHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHH
Confidence 0135999999853 223357777654211 11111 1245678999999975 468999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 478 LCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 478 iA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
|||||+++|++|||||||++||+.++..++++|+++.++.|.|||+||||++++..+||||++|+++.. ...++++++
T Consensus 167 iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i--~~~g~~~~~ 244 (529)
T PRK15134 167 IAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC--VEQNRAATL 244 (529)
T ss_pred HHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE--EEeCCHHHH
Confidence 999999999999999999999999999999999998665689999999999999999999999986543 345777776
Q ss_pred hc
Q 040300 558 LT 559 (605)
Q Consensus 558 ~~ 559 (605)
+.
T Consensus 245 ~~ 246 (529)
T PRK15134 245 FS 246 (529)
T ss_pred hh
Confidence 54
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=294.77 Aligned_cols=203 Identities=19% Similarity=0.328 Sum_probs=161.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC-----eeeee--cccc-----C----c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-----SVEDS--DVEI-----P----E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-----~G~i~--~~~~-----~----~ 412 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++|+ +|++. +..+ . .
T Consensus 14 ~~~~~~~-~il~~is~~i~~G-----e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~ 87 (261)
T PRK14258 14 SFYYDTQ-KILEGVSMEIYQS-----KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLR 87 (261)
T ss_pred EEEeCCe-eEeeceEEEEcCC-----cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhh
Confidence 6777653 4688999998888 789999999999999999999999985 67653 2111 1 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CC-CC---HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SY-TH---PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~-~~---~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+... +..|+.+++...... .. .. ...+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 88 ~~i~~~~q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 166 (261)
T PRK14258 88 RQVSMVHPKPNL-FPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA 166 (261)
T ss_pred ccEEEEecCCcc-CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 358999998654 347998877532111 11 11 23456788888874 4678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC-----CcceeeecCChhhhh
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG-----QPSVDCVANAPQSLL 558 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g-----~~~~~~~~~~p~~~~ 558 (605)
.+|++|||||||++||+.++..+.+.|+++..+.+.|||+||||++++..+||||++|++ +.. ...++|+++.
T Consensus 167 ~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i--~~~~~~~~~~ 244 (261)
T PRK14258 167 VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQL--VEFGLTKKIF 244 (261)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceE--EEeCCHHHHH
Confidence 999999999999999999999999999998655589999999999999999999999996 432 3557888876
Q ss_pred cc
Q 040300 559 TG 560 (605)
Q Consensus 559 ~~ 560 (605)
+.
T Consensus 245 ~~ 246 (261)
T PRK14258 245 NS 246 (261)
T ss_pred hC
Confidence 53
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=331.41 Aligned_cols=203 Identities=40% Similarity=0.670 Sum_probs=161.1
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+. +.|..++ .+++||++||+|+||||||||+|+|+|+++|+.|++....
T Consensus 346 ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~----------------------- 400 (590)
T PRK13409 346 LTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPEL----------------------- 400 (590)
T ss_pred eEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEee-----------------------
Confidence 4456754 3355555 4589999999999999999999999999999999985210
Q ss_pred HHHHHhhcccccccchhhhhchhhhhcC----chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCE
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEI 237 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l~----~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~v 237 (605)
..++.+|+....+. .++.+.+. .......+.++++.++|.+.+++++.+|||||||||+||+||+++|++
T Consensus 401 ---~i~y~~Q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l 474 (590)
T PRK13409 401 ---KISYKPQYIKPDYD---GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL 474 (590)
T ss_pred ---eEEEecccccCCCC---CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 01122222211110 11111110 001123467899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCC
Q 040300 238 YMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGF 316 (605)
Q Consensus 238 lllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~ 316 (605)
|||||||++||+.++..+.++|++++++ |+|||+||||++++..+||++++|+|+++.+|..+.|.+.+++.|.|+...
T Consensus 475 lLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~~~~~g~~~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGEPGKHGHASGPMDMREGMNRFLKEL 554 (590)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCcceeeeecCCchhHHHHHHHHHHHc
Confidence 9999999999999999999999999864 899999999999999999999999999988888888988999999888743
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=294.24 Aligned_cols=201 Identities=20% Similarity=0.282 Sum_probs=159.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC-----eeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-----SVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-----~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|+ +|++. +.... .
T Consensus 11 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T PRK14272 11 NIYYGD-KQAVKNVNLDVQRG-----TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84 (252)
T ss_pred EEEECC-EEeeccceEEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhh
Confidence 677765 34688999998888 789999999999999999999999874 78874 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCCH----HHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTHP----QFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~~----~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.......|+.+++..... ...... +.+.++++.+++ .+..++++.+|||||+|||+|||||+
T Consensus 85 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14272 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA 164 (252)
T ss_pred ceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 359999999765555799988753221 111111 234455666665 35678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++|++|||||||++||+.++..+.++|+++. + +.|+|++|||++++..+|||+++|+++.. ...+++++++.
T Consensus 165 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 236 (252)
T PRK14272 165 VEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVGDL--VEHGPTDQLFT 236 (252)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHh
Confidence 9999999999999999999999999999984 3 69999999999999999999999986543 35577777654
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=309.86 Aligned_cols=199 Identities=21% Similarity=0.338 Sum_probs=144.7
Q ss_pred ceEEeCC---CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGP---NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~---~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+. ....+++++ .+++||++||+|+||||||||+|+|+|+++|+.|++. +.|.++..+...
T Consensus 7 l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~-----------~~g~~i~~~~~~ 75 (343)
T PRK11153 7 ISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL-----------VDGQDLTALSEK 75 (343)
T ss_pred EEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-----------ECCEECCcCCHH
Confidence 4556651 123455665 4589999999999999999999999999999999985 222222111000
Q ss_pred HHH-HHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 159 ILE-DNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 159 ~~~-~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
... -.-...+.+|.....+. .+..++.. . ......+.++.++++.+||.+.+++++.+|||||+||++||+||
T Consensus 76 ~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 76 ELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 000 00011222332221111 11111110 0 11223346788999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|++|||||||++||+.++..+.++|+++.++ |+|||+||||++++..+||++++|..+
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G 217 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAG 217 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999765 899999999999999999999999643
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=294.82 Aligned_cols=198 Identities=22% Similarity=0.309 Sum_probs=143.1
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+.........
T Consensus 7 l~~~~~~~-~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~~ 74 (240)
T PRK09493 7 VSKHFGPT-QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV-----------DGLKVNDPKVDERL 74 (240)
T ss_pred EEEEECCe-EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEECCcCChhHHH
Confidence 45566532 2455555 35799999999999999999999999999999999852 22211110000000
Q ss_pred HHHHHhhcccccccchh-hhhchhhh----h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 162 DNLKAIIKPQYVDHIPK-AVQGNVGQ----V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~-~~~~~v~~----~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
-.-..++.+|.....+. .+...+.. . .......+++.++++.+||++.+++.+.+|||||+||++||+||+.+
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred HhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 00011222232211111 11111100 0 11122345678899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+++||||||++||+.++..+.++|+++.++++|||+||||++++..+||++++|..+
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 212 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKG 212 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999877899999999999999999999999643
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=290.89 Aligned_cols=198 Identities=18% Similarity=0.330 Sum_probs=152.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++
T Consensus 9 ~~~~~~~~~~l~~isl~i~~G-----~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 83 (229)
T cd03254 9 NFSYDEKKPVLKDINFSIKPG-----ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVL 83 (229)
T ss_pred EEecCCCCccccceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEec
Confidence 667764234688999999888 68999999999999999999999999999875 21111 23589999
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhc-----------CCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPL-----------LIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
|+... +..|+.+++...... .....+.++++.+ ++....++.+.+|||||+|||+|||||+.+|++
T Consensus 84 q~~~~-~~~tv~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 84 QDTFL-FSGTIMENIRLGRPN--ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred CCchh-hhhHHHHHHhccCCC--CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 98653 445888877432111 1122333344444 344445667899999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|||||||+|||+.++..++++|+++. + +.|||+||||++++.. ||++++|+++... ..++++++.+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~--~~~~~~~~~~ 226 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIKN-ADKILVLDDGKII--EEGTHDELLA 226 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEEeCCeEE--EeCCHHHHHh
Confidence 99999999999999999999999983 3 8999999999999864 9999999865532 3456555543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=295.08 Aligned_cols=198 Identities=21% Similarity=0.242 Sum_probs=160.2
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHH
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLH 435 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~ 435 (605)
...+.+++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.. .+++.+|........|+.+++.
T Consensus 37 ~~il~~is~~i~~G-----e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~---~~g-~~~~~~~~~~~~~~~tv~enl~ 107 (264)
T PRK13546 37 FFALDDISLKAYEG-----DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD---RNG-EVSVIAISAGLSGQLTGIENIE 107 (264)
T ss_pred eEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---ECC-EEeEEecccCCCCCCcHHHHHH
Confidence 44688899998888 78999999999999999999999999999874 111 2566777654445578988764
Q ss_pred hhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040300 436 QKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK 511 (605)
Q Consensus 436 ~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 511 (605)
.... ..+.. ...+.++++.+++.+..++++.+|||||+|||+||+||+.+|++|||||||+|||+.++..+.++|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~ 187 (264)
T PRK13546 108 FKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIY 187 (264)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 3211 11211 1234567888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccccc
Q 040300 512 RFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFL 565 (605)
Q Consensus 512 ~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l 565 (605)
++. +.|.|+|++|||++++..+||++++++++.. ...++++++......|+
T Consensus 188 ~~~-~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i--~~~g~~~~~~~~~~~~~ 238 (264)
T PRK13546 188 EFK-EQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL--KDYGELDDVLPKYEAFL 238 (264)
T ss_pred HHH-HCCCEEEEEcCCHHHHHHHcCEEEEEECCEE--EEeCCHHHHHHHhHHHH
Confidence 985 4589999999999999999999999986544 35578888777644443
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=298.01 Aligned_cols=200 Identities=19% Similarity=0.291 Sum_probs=159.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--cccc-----C----c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEI-----P----E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~-----~----~ 412 (605)
.+.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+.+ |++|++. +..+ . .
T Consensus 46 ~~~~~~-~~il~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~ 119 (286)
T PRK14275 46 SIYYGE-FEAVKKVNADILSK-----YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLR 119 (286)
T ss_pred EEEECC-EEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhh
Confidence 777765 34789999998888 7899999999999999999999864 4899875 2211 0 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++...... .... ...+.++++.+++ .+.+++++.+|||||+|||+|||||+
T Consensus 120 ~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 198 (286)
T PRK14275 120 KKIGMVFQKPNPF-PKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLA 198 (286)
T ss_pred hcEEEECCCCCCC-ccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 3599999987543 45999987542111 1111 2345677888887 45678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..+.++|+++.. +.|||+||||++++..+|||+++|+++.. ...+++.++.+
T Consensus 199 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i--~~~g~~~~~~~ 270 (286)
T PRK14275 199 VEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVL--VEHAPTAQLFT 270 (286)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHh
Confidence 99999999999999999999999999999843 58999999999999999999999986543 34577777654
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=292.14 Aligned_cols=200 Identities=19% Similarity=0.227 Sum_probs=159.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC-----eeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-----SVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-----~G~i~--~~~~~---------~ 412 (605)
.+.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|+ +|++. +.... .
T Consensus 11 ~~~~~~-~~il~~~s~~i~~G-----~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 84 (251)
T PRK14249 11 NFFYHK-HQVLKNINMDFPER-----QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLR 84 (251)
T ss_pred EEEECC-eeEecceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhh
Confidence 677765 34689999998888 689999999999999999999999997 58764 21111 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCC----CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYT----HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~----~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++...... ... ....+.++++.+++. +..++++.+|||||+|||+|||||+
T Consensus 85 ~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 163 (251)
T PRK14249 85 KRVGMVFQQPNPF-PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA 163 (251)
T ss_pred ceEEEEecCCccC-cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 3599999997543 45998887532111 111 123355667777764 5678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..+.++|+++ . .+.|||+||||++++..+||++++|+++.. ...++++++..
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 235 (251)
T PRK14249 164 IEPEVILMDEPCSALDPVSTMRIEELMQEL-K-QNYTIAIVTHNMQQAARASDWTGFLLTGDL--VEYGRTGEIFS 235 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHH-h-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeE--EEeCCHHHHHh
Confidence 999999999999999999999999999998 3 379999999999999999999999986543 34577777654
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=292.09 Aligned_cols=203 Identities=28% Similarity=0.327 Sum_probs=144.8
Q ss_pred eEEEecCCcccCCCceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
+|++.||. ++|+.. ...+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++.
T Consensus 6 ~l~~~~l~--------~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~--------- 68 (228)
T PRK10584 6 IVEVHHLK--------KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS--------- 68 (228)
T ss_pred eEEEeeeE--------EEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEE---------
Confidence 56666654 455432 12355555 3579999999999999999999999999999999984
Q ss_pred hhhccchhhhhHHHHHHH--HHHHhhcccccccchh-hhhchhhh--h---cCchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 145 TYFRGSELQNYFTRILED--NLKAIIKPQYVDHIPK-AVQGNVGQ--V---LDQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~--~~~~~~~~q~~~~~~~-~~~~~v~~--~---l~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
+.|..+..+....... ....++.+|.....+. .+..++.. . ......++++.++++.++|.+.+++.+.+
T Consensus 69 --~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 146 (228)
T PRK10584 69 --LVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ 146 (228)
T ss_pred --ECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhh
Confidence 2222221110000000 0011222332221111 11111110 0 11123356788999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||||+||++||+||+.+|++|||||||++||+.++..+.+.|++++++ +.|||++|||++++.. ||++++|.+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~ 221 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVN 221 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999764 8999999999999865 999999964
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=315.03 Aligned_cols=199 Identities=25% Similarity=0.313 Sum_probs=147.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
.|++.|| +++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 3 ~l~i~~l--------~~~~~~~-~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~----------- 62 (369)
T PRK11000 3 SVTLRNV--------TKAYGDV-VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI----------- 62 (369)
T ss_pred EEEEEEE--------EEEeCCe-EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE-----------
Confidence 4666665 4566542 2455555 45799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|..+...... ....++.+|.....|. .+..++... ......++++.++++.++|.+++++++.+|||||
T Consensus 63 ~g~~i~~~~~~----~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq 138 (369)
T PRK11000 63 GEKRMNDVPPA----ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQ 138 (369)
T ss_pred CCEECCCCCHh----HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHH
Confidence 22221110000 0011222332222221 111111100 1122335678899999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+|||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ +.|||+||||++++..+||+|++|+.
T Consensus 139 ~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~ 209 (369)
T PRK11000 139 RQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA 209 (369)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999765 89999999999999999999999974
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=323.00 Aligned_cols=190 Identities=22% Similarity=0.285 Sum_probs=159.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 11 ~~~~~~-~~il~~isl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 84 (501)
T PRK11288 11 GKTFPG-VKALDDISFDCRAG-----QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAII 84 (501)
T ss_pred EEEECC-EEEEeeeeEEEeCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEE
Confidence 677765 34689999999888 68999999999999999999999999999975 22211 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc-c--CCCC----HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 419 PQKISPKFQSTVRHLLHQKIR-D--SYTH----PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~-~--~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|+.......|+.+++..... . .... ...+.++++.+++....++++.+|||||||||+|||||+.+|++|||
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (501)
T PRK11288 85 YQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAF 164 (501)
T ss_pred EechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 998765556799988754211 0 1111 23567889999999888999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||||++||+.++..+.++|+++.+ .|.|||+||||++++..+|||+++|+++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~ 217 (501)
T PRK11288 165 DEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITVFKDGR 217 (501)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999854 58999999999999999999999998654
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=296.03 Aligned_cols=201 Identities=19% Similarity=0.335 Sum_probs=159.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++ |++|++. +..+. .
T Consensus 31 ~~~~~~~-~il~~vsl~i~~G-----e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 104 (271)
T PRK14238 31 NLWYGED-HALKNINLDIHEN-----EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104 (271)
T ss_pred EEEECCc-ceeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHh
Confidence 7778653 4689999999888 7899999999999999999999997 6899875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcC----CchhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLL----IEQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~----l~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++...... .... ...+.++++.++ +.+..++++.+|||||+|||+|||||+
T Consensus 105 ~~i~~v~q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~ 183 (271)
T PRK14238 105 TNVGMVFQKPNPF-PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLA 183 (271)
T ss_pred hhEEEEecCCccc-cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 3599999987543 45999887532111 1111 123456666664 456678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++. + +.|+|+||||++++..+|||+++|+++.. ...+++.++.+.
T Consensus 184 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 256 (271)
T PRK14238 184 IEPDVILMDEPTSALDPISTLKVEELVQELK-K-DYSIIIVTHNMQQAARISDKTAFFLNGYV--NEYDDTDKIFSN 256 (271)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHcC
Confidence 9999999999999999999999999999984 3 68999999999999999999999986543 345777776543
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=278.97 Aligned_cols=160 Identities=31% Similarity=0.428 Sum_probs=135.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~------~~~i~y 417 (605)
.+.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... + ...++|
T Consensus 7 ~~~~~~-~~~l~~i~~~i~~G-----~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 7 SKRYGQ-KTVLNDVSLNIEAG-----EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred EEEECC-eEEEeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 566765 34688999999888 78999999999999999999999999999875 2111 1 235899
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
++|+.......|+.+++... |||||+||++|||||+.+|++|||||||++
T Consensus 81 ~~q~~~~~~~~t~~~~l~~~------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~ 130 (178)
T cd03229 81 VFQDFALFPHLTVLENIALG------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSA 130 (178)
T ss_pred EecCCccCCCCCHHHheeec------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCccc
Confidence 99986654456777765211 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
||+.++..+.++|+++.++.+.|+|+||||++++..+||++++|+.+
T Consensus 131 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 131 LDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 99999999999999986644799999999999999999999999753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=276.61 Aligned_cols=193 Identities=24% Similarity=0.348 Sum_probs=152.3
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC-CChh----hh---hhhhccch
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP-PDWQ----EI---LTYFRGSE 151 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~-~~~~----~~---~~~~~g~~ 151 (605)
++++++|+.....|.+++ .+.+||++-|+||||||||||+|+|.+..+|+.|++.-. -+.. .. +..--|..
T Consensus 5 ~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvV 84 (223)
T COG2884 5 ENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVV 84 (223)
T ss_pred hhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeE
Confidence 457778876644777777 468999999999999999999999999999999998521 1100 00 11111333
Q ss_pred hhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHH
Q 040300 152 LQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRF 225 (605)
Q Consensus 152 l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRv 225 (605)
+|+| -.++. .+..+|.-. ......++++.++|+.+||.+..+..+.+|||||||||
T Consensus 85 FQD~------------------rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRv 146 (223)
T COG2884 85 FQDF------------------RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRV 146 (223)
T ss_pred eeec------------------cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHH
Confidence 3332 11111 112222211 12456688999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+||||++.+|++||.||||.+|||....++++++.++...|.||||.|||.+.++.+-.+++.|..
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~ 212 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALED 212 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999964
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=291.32 Aligned_cols=199 Identities=22% Similarity=0.381 Sum_probs=156.3
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
.++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 7 ~~~~~~~~~~~l~~i~~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (234)
T cd03251 7 TFRYPGDGPPVLRDISLDIPAG-----ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLV 81 (234)
T ss_pred EEEeCCCCccceeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEe
Confidence 5666543 13688999998888 78999999999999999999999999999875 22111 2358999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHH---------HHHHHhhc--CCchhhccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQF---------VSDVMKPL--LIEQLMDQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~---------~~~~l~~l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
+|+... +..|+.+++...... . .... ..++++.+ ++....++++.+|||||+|||+|||||+.+|+
T Consensus 82 ~q~~~~-~~~tv~enl~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 82 SQDVFL-FNDTVAENIAYGRPG-A-TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred CCCCee-ccccHHHHhhccCCC-C-CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 998654 457999987532111 1 1111 23344444 56666788899999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||++||+.++..+.+.|+++. + +.|||+||||++++.. |||+++|+.+.. ...++++++...
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i--~~~~~~~~~~~~ 226 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKI--VERGTHEELLAQ 226 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecCCeE--eeeCCHHHHHHc
Confidence 999999999999999999999999984 3 8999999999999976 999999986543 345677776544
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=298.41 Aligned_cols=207 Identities=19% Similarity=0.230 Sum_probs=148.3
Q ss_pred CcceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 66 PFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 66 p~~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
|-.+|++.||.+ +|+.. ..+.+++ .+.+|++++|+|+||||||||+++|+|+++|+.|++..
T Consensus 4 ~~~~l~~~~l~~--------~~~~~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-------- 66 (269)
T PRK11831 4 VANLVDMRGVSF--------TRGNR-CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF-------- 66 (269)
T ss_pred ccceEEEeCeEE--------EECCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE--------
Confidence 445677777654 56532 3455555 35799999999999999999999999999999999742
Q ss_pred hhhccchhhhhHHHHH-HHHHHHhhcccccccchh-hhhchhhh---h---cCchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 145 TYFRGSELQNYFTRIL-EDNLKAIIKPQYVDHIPK-AVQGNVGQ---V---LDQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~-~~~~~~~~~~q~~~~~~~-~~~~~v~~---~---l~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|..+..+..... ...-..++.+|.....+. .+..++.. . +.......++.++++.++|.+.+++.+.+
T Consensus 67 ---~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 143 (269)
T PRK11831 67 ---DGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSE 143 (269)
T ss_pred ---CCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 2221111000000 000011222332221111 11111110 0 11122345677899999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||+|||+||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++..+||++++|+.+
T Consensus 144 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G 220 (269)
T PRK11831 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADK 220 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999765 899999999999999999999999643
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=291.83 Aligned_cols=200 Identities=21% Similarity=0.255 Sum_probs=159.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +.... .
T Consensus 10 ~~~~~~~-~~l~~i~~~i~~G-----e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~ 83 (250)
T PRK14262 10 SAYYGEK-KAVKNVTMKIFKN-----QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYR 83 (250)
T ss_pred EEEeCCc-eeEeeeeEeecCC-----CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhh
Confidence 6677653 4688999998888 78999999999999999999999984 889875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+++++...... .... ...+.++++.+++. ...++++.+|||||+||++|||||+
T Consensus 84 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~ 162 (250)
T PRK14262 84 KKVGMVFQKPTPF-PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA 162 (250)
T ss_pred hhEEEEecCCccC-cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence 3599999986543 47999887532111 1111 12356678888875 3578999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..+.++|+++. + +.|+|+||||++.+..+|||+++++.+.. ...++++++..
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tili~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 234 (250)
T PRK14262 163 VEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NYTIVIVTHNIGQAIRIADYIAFMYRGEL--IEYGPTREIVE 234 (250)
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-CcEEEEEeCCHHHHHHhCCEEEEEECCEE--EEecCHHHHHh
Confidence 9999999999999999999999999999984 3 68999999999999999999999986543 35577777754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=295.27 Aligned_cols=198 Identities=24% Similarity=0.362 Sum_probs=144.0
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.....+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|..+..+.....
T Consensus 5 ~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~ 73 (242)
T cd03295 5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI-----------DGEDIREQDPVEL 73 (242)
T ss_pred EEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-----------CCeEcCcCChHHh
Confidence 45566764122455665 45899999999999999999999999999999999752 2221111000000
Q ss_pred HHHHHHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCch--hhcccCCCCChHHHHHHHHHHHHc
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQ--VIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~--~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
. ...++.+|.....+. .+..++. .. ......++++.++++.++|.+ ..++.+.+|||||+||++||+||+
T Consensus 74 ~--~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 74 R--RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred h--cceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 0 011222332211111 1111111 00 111223456889999999985 889999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.+|++|||||||++||+.++..+.+.|+++.++ |.|||+||||++++..+||+|++|+.+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G 212 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNG 212 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999764 899999999999999999999999753
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=310.07 Aligned_cols=200 Identities=24% Similarity=0.323 Sum_probs=148.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..+++++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|..
T Consensus 2 ~L~i~~l--------~~~~~~~-~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i----------- 61 (353)
T PRK10851 2 SIEIANI--------KKSFGRT-QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF----------- 61 (353)
T ss_pred EEEEEEE--------EEEeCCe-EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------
Confidence 4666665 4466542 3455555 35799999999999999999999999999999999842
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
.|.++..... .....++.+|.....|. .+..++... .......+++.++++.++|++++++++.+|
T Consensus 62 ~g~~i~~~~~----~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 137 (353)
T PRK10851 62 HGTDVSRLHA----RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQL 137 (353)
T ss_pred CCEECCCCCH----HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 2222111000 00011222232222221 111111100 112234567889999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ +.|+|+||||++++..+||+|++|+.+
T Consensus 138 SgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G 213 (353)
T PRK10851 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQG 213 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999876 899999999999999999999999743
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=294.49 Aligned_cols=202 Identities=18% Similarity=0.299 Sum_probs=160.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+|+|+|+++| ++|++. +..+. .
T Consensus 14 ~~~~~~-~~il~~isl~i~~G-----e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (259)
T PRK14260 14 SFYYNT-SKAIEGISMDIYRN-----KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLR 87 (259)
T ss_pred EEEECC-eEeecceEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhh
Confidence 677765 34689999999888 78999999999999999999999985 478875 22211 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++..... .... ....+.++++.+++ .+..++.+.+|||||+|||+|||||+
T Consensus 88 ~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 166 (259)
T PRK14260 88 RQIGMVFQRPNPF-PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA 166 (259)
T ss_pred hheEEEecccccC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 3599999987544 4799998753211 1111 12345678888887 35788999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC---CcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG---QPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g---~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||++||+.++..++++|+++. + +.|||++|||++++..+|||+++|+. ..+.....+++.++++
T Consensus 167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 243 (259)
T PRK14260 167 IKPKVLLMDEPCSALDPIATMKVEELIHSLR-S-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS 243 (259)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhc
Confidence 9999999999999999999999999999984 3 58999999999999999999999972 1122345678888754
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=290.95 Aligned_cols=194 Identities=22% Similarity=0.322 Sum_probs=141.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCC-----CCCCceeeCCCChhhhhhhhccchhhhh
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKL-----KPNLGRFNNPPDWQEILTYFRGSELQNY 155 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l-----~p~~G~i~~~~~~~~~~~~~~g~~l~~~ 155 (605)
+++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|++ +|+.|++.. .|.++..+
T Consensus 5 ~l~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~-----------~g~~~~~~ 72 (227)
T cd03260 5 DLNVYYGDK-HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL-----------DGKDIYDL 72 (227)
T ss_pred EEEEEcCCc-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEE-----------CCEEhhhc
Confidence 455667643 3456665 45799999999999999999999999999 999999852 22222111
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhchhhhhc---------Cc-hHHHHHHHHHHhhcCCchhhccc--CCCCChHHHH
Q 040300 156 FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQ-KDERDMKADLCTDLDLNQVIDRN--VGDLSGGELQ 223 (605)
Q Consensus 156 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~-~~~~~~~~~~l~~l~L~~~~dr~--v~~LSGGe~Q 223 (605)
........-..++.+|... .+..++.+.+ .. ...++++.++++.+||.+..++. +.+|||||+|
T Consensus 73 ~~~~~~~~~~i~~~~q~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q 148 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPN----PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQ 148 (227)
T ss_pred chHHHHHHhhEEEEecCch----hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHH
Confidence 0000000001112222211 1111222111 01 11346678899999999877777 5999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|++||+||+.+|++|||||||++||+..+..+.++|+++.++ .|||++|||++++..+||++++|..+
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G 216 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNG 216 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999876 99999999999999999999999753
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=283.53 Aligned_cols=183 Identities=22% Similarity=0.282 Sum_probs=149.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|++|
T Consensus 7 ~~~~~~~-~~l~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 7 ACSRGER-MLFEGLSFTLNAG-----EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred EEEECCE-EEEeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 5667653 4688999998888 78999999999999999999999999999875 21111 235899999
Q ss_pred cCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
+.......|+.+++.............+.++++.+++.+..++++.+|||||+|||+|||||+.+|+++||||||++||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 160 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160 (198)
T ss_pred CcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 86554457999887432111111234577899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEE
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv 540 (605)
.++..+.++|+++.+ .|.|+|++|||...+ .++|++.
T Consensus 161 ~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 161 AGVALLAGLLRAHLA-RGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEEcccccc--cceEEee
Confidence 999999999999854 589999999998654 4677764
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=305.51 Aligned_cols=213 Identities=23% Similarity=0.348 Sum_probs=149.5
Q ss_pred eEEEecCCcccCCCce---EEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhh
Q 040300 69 AIQIINLPKDLDKDTT---HRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI 143 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~---~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~ 143 (605)
.|+|.||.+.|...-. ..++. ....+++++ .+.+||++||+|+||||||||+++|+|+++|+.|+|.
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~-------- 79 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA-------- 79 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEE--------
Confidence 5888888776642100 00000 112345555 3579999999999999999999999999999999984
Q ss_pred hhhhccchhhhhHHHHHHH-HHHHhhccccc--ccchh-hhhchhhh-------hcCchHHHHHHHHHHhhcCCc-hhhc
Q 040300 144 LTYFRGSELQNYFTRILED-NLKAIIKPQYV--DHIPK-AVQGNVGQ-------VLDQKDERDMKADLCTDLDLN-QVID 211 (605)
Q Consensus 144 ~~~~~g~~l~~~~~~~~~~-~~~~~~~~q~~--~~~~~-~~~~~v~~-------~l~~~~~~~~~~~~l~~l~L~-~~~d 211 (605)
|.|.++.......... .-...+.+|.. ...|. .+...+.. .+.....++++.++++.++|. +.++
T Consensus 80 ---~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~ 156 (331)
T PRK15079 80 ---WLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLIN 156 (331)
T ss_pred ---ECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhc
Confidence 2333222110000000 00112222221 01111 01111111 012233456788999999994 6889
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+++.+|||||+|||+||+||+.+|++||+||||++||+..+.++.++|+++.++ +.|||+||||++++..+||+|++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999875 8999999999999999999999998
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
.+
T Consensus 237 ~G 238 (331)
T PRK15079 237 LG 238 (331)
T ss_pred CC
Confidence 54
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=292.50 Aligned_cols=197 Identities=26% Similarity=0.350 Sum_probs=141.2
Q ss_pred ceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+.+ ...|++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|.++......
T Consensus 11 l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~i~~~~~~ 79 (233)
T PRK11629 11 LCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF-----------NGQPMSKLSSA 79 (233)
T ss_pred EEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------CCEEcCcCCHH
Confidence 45566432 13466666 46899999999999999999999999999999999852 22221111000
Q ss_pred HHHH--HHHHhhcccccccchh-hhhchhhh-----hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 159 ILED--NLKAIIKPQYVDHIPK-AVQGNVGQ-----VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 159 ~~~~--~~~~~~~~q~~~~~~~-~~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
.... .....+.+|.....+. .+..++.. .+.....++++.++++.+||.+.+++.+.+|||||+||++||+|
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 0000 0011222332211111 11111110 01122334678899999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+.+|++|||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+ |++++|.+
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~ 220 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRD 220 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEEC
Confidence 9999999999999999999999999999999975 489999999999999875 68888864
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=297.54 Aligned_cols=194 Identities=25% Similarity=0.342 Sum_probs=145.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
.|++.||. ++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 12 ~l~i~~l~--------~~~~~~-~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~----------- 71 (257)
T PRK11247 12 PLLLNAVS--------KRYGER-TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA----------- 71 (257)
T ss_pred cEEEEEEE--------EEECCc-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-----------
Confidence 36776654 456542 2455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQR 224 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QR 224 (605)
.|..+..+ ....++.+|.....+. .++.+.+. ......++.++++.++|.+.+++.+.+|||||+||
T Consensus 72 ~g~~~~~~-------~~~i~~v~q~~~l~~~---~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqr 141 (257)
T PRK11247 72 GTAPLAEA-------REDTRLMFQDARLLPW---KKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQR 141 (257)
T ss_pred CCEEHHHh-------hCceEEEecCccCCCC---CcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH
Confidence 12111100 0011122222111110 12222221 11124567889999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
++||+||+.+|++|||||||++||+..+..+.++|+++.+ .+.|||+||||++++..+||+|++|+.+
T Consensus 142 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G 210 (257)
T PRK11247 142 VALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999865 4899999999999999999999999743
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=291.10 Aligned_cols=197 Identities=23% Similarity=0.296 Sum_probs=141.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+........
T Consensus 5 ~l~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~~~~~ 72 (222)
T cd03224 5 NLNAGYGKS-QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF-----------DGRDITGLPPHER 72 (222)
T ss_pred eEEeecCCe-eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEEcCCCCHHHH
Confidence 455566543 2455555 45899999999999999999999999999999998852 1211111000000
Q ss_pred HHHHHHhhcccccccchh-hhhchhhh---hcCchHHHHHHHHHHhhc-CCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQ---VLDQKDERDMKADLCTDL-DLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~---~l~~~~~~~~~~~~l~~l-~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
. ....++.+|.....+. .+...+.. .........++.++++.+ ++.+.+++++.+|||||+||++||+||+.+|
T Consensus 73 ~-~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 73 A-RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred H-hcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 0 0011222332221121 11111110 011112344567788888 5888899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++|||||||++||+..+..+.++|+++.+.+.|||++|||++++..+||++++|+.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLER 207 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeC
Confidence 99999999999999999999999999987789999999999999999999999964
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=294.43 Aligned_cols=203 Identities=23% Similarity=0.312 Sum_probs=146.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++...
T Consensus 3 ~l~~~~l--------~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~---------- 63 (250)
T PRK11264 3 AIEVKNL--------VKKFHGQ-TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG---------- 63 (250)
T ss_pred cEEEece--------EEEECCe-eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC----------
Confidence 4666655 4566543 3455555 457999999999999999999999999999999987421
Q ss_pred ccchhhhhH------HHHHHHHHHHhhcccccccchh-hhhchhhh------hcCchHHHHHHHHHHhhcCCchhhcccC
Q 040300 148 RGSELQNYF------TRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ------VLDQKDERDMKADLCTDLDLNQVIDRNV 214 (605)
Q Consensus 148 ~g~~l~~~~------~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~------~l~~~~~~~~~~~~l~~l~L~~~~dr~v 214 (605)
|..+.... .....-....++.+|.....+. .+..++.. ........+++.++++.+||.+..++.+
T Consensus 64 -g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 142 (250)
T PRK11264 64 -DITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP 142 (250)
T ss_pred -CEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh
Confidence 11111000 0000000112223333222211 11111110 0111223456788999999998899999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 215 ~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+|||||+||++||+||+.+|++|||||||++||+.++..+.+.|+++.+++.|||+||||++++..+||++++|..
T Consensus 143 ~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~ 219 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQ 219 (250)
T ss_pred hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999987799999999999999999999999964
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=293.89 Aligned_cols=201 Identities=17% Similarity=0.295 Sum_probs=161.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++ |++|++. +..+. .
T Consensus 27 ~~~~~~-~~il~~vsl~i~~G-----e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 100 (267)
T PRK14237 27 HVYYGK-KEAIKGIDMQFEKN-----KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMR 100 (267)
T ss_pred EEEECC-eeeEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHh
Confidence 777765 34789999999888 7899999999999999999999997 5789875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+... +..|+.+++...... .... ...+.++++.+++. +.+++++.+|||||+|||+|||||+
T Consensus 101 ~~i~~v~q~~~~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~ 179 (267)
T PRK14237 101 KHIGMVFQRPNP-FAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA 179 (267)
T ss_pred cceEEEecCCcc-ccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 359999998654 346999987542211 1111 23456778888884 4678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++. + +.|||+||||++++..+|||+++|+++.. ...+++.++.+.
T Consensus 180 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 252 (267)
T PRK14237 180 VKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDL--IEYDKTRNIFTN 252 (267)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEE--EEeCCHHHHhcC
Confidence 9999999999999999999999999999984 3 78999999999999999999999986543 356777777553
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=284.45 Aligned_cols=203 Identities=21% Similarity=0.292 Sum_probs=171.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---cceeEeecCcCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---EFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---~~~i~y~~q~~~ 423 (605)
+.+|++. .++++++|++.+| |+.|++|||||||||.+|||.|+++|++|+|. +..+. ..+|||.|.+..
T Consensus 9 tK~Fg~k-~av~~isf~v~~G-----~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERG 82 (300)
T COG4152 9 TKSFGDK-KAVDNISFEVPPG-----EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERG 82 (300)
T ss_pred hhccCce-eeecceeeeecCC-----eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhc
Confidence 5667764 4789999999998 68999999999999999999999999999986 22222 246999999988
Q ss_pred CCCcCcHHHHHHh--hhccCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 424 PKFQSTVRHLLHQ--KIRDSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 424 ~~~~~tv~~~~~~--~~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
.+..+||.+-+.. .....- .....+..||+++++.....+++.+||-|++|++.+..+++++|+++|||||+||||
T Consensus 83 Ly~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLD 162 (300)
T COG4152 83 LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLD 162 (300)
T ss_pred cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 8888999885432 222111 123457789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|-+.+.+.+.|.++ ++.|+|||++||.|+-+..+||++++++.+.. ...|+.++++..
T Consensus 163 PVN~elLk~~I~~l-k~~GatIifSsH~Me~vEeLCD~llmL~kG~~--V~~G~v~~ir~~ 220 (300)
T COG4152 163 PVNVELLKDAIFEL-KEEGATIIFSSHRMEHVEELCDRLLMLKKGQT--VLYGTVEDIRRS 220 (300)
T ss_pred hhhHHHHHHHHHHH-HhcCCEEEEecchHHHHHHHhhhhheecCCce--EEeccHHHHHHh
Confidence 99999999999998 45799999999999999999999999984432 456888888774
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=294.20 Aligned_cols=203 Identities=18% Similarity=0.273 Sum_probs=158.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--cccc-----C----c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEI-----P----E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~-----~----~ 412 (605)
+++|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++ |++|++. +..+ . .
T Consensus 17 ~~~~~~~-~il~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 90 (264)
T PRK14243 17 NVYYGSF-LAVKNVWLDIPKN-----QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVR 90 (264)
T ss_pred EEEECCE-EEeecceEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHh
Confidence 6777653 4689999999888 7899999999999999999999986 3789875 2221 1 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCC--CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYT--HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~--~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..++|++|+.... ..|+.+++...... .+. ....+.++++.+++. ...++++.+|||||+|||+|||||+.+
T Consensus 91 ~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 169 (264)
T PRK14243 91 RRIGMVFQKPNPF-PKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQ 169 (264)
T ss_pred hhEEEEccCCccc-cccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 3599999986543 35898887532111 111 123445667777774 457889999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC-------CcceeeecCChhhhh
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG-------QPSVDCVANAPQSLL 558 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g-------~~~~~~~~~~p~~~~ 558 (605)
|++|||||||++||+.++..+.++|+++.+ +.|||++|||++++..+|||+++|+. ..+.....++++++.
T Consensus 170 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 170 PEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 999999999999999999999999999853 58999999999999999999999971 112334567788876
Q ss_pred cc
Q 040300 559 TG 560 (605)
Q Consensus 559 ~~ 560 (605)
+.
T Consensus 248 ~~ 249 (264)
T PRK14243 248 NS 249 (264)
T ss_pred hC
Confidence 53
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=296.78 Aligned_cols=200 Identities=19% Similarity=0.326 Sum_probs=158.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++ |++|++. +.... .
T Consensus 46 ~~~~~~-~~il~~is~~i~~G-----e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~ 119 (285)
T PRK14254 46 NVFYGD-EQALDDVSMDIPEN-----QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALR 119 (285)
T ss_pred EEEECC-EeeEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhh
Confidence 677865 34789999998888 7899999999999999999999987 6899875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CC--CCHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SY--THPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~--~~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..++|++|+... +..|+.+++...... .. .....+.++++.+++. +.+++++.+|||||||||+|||||+.+
T Consensus 120 ~~i~~v~q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~ 198 (285)
T PRK14254 120 RRIGMVFQKPNP-FPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPD 198 (285)
T ss_pred ccEEEEecCCcc-CcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 358999998654 345998877532111 11 1134567788899874 467899999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEE-EEeCCcceeeecCChhhhhc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI-VYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrvi-v~~g~~~~~~~~~~p~~~~~ 559 (605)
|+||||||||++||+.++..+.++|+++.+ +.|||++|||++++..+|||++ +++++.. ...+++.++..
T Consensus 199 p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i--~~~g~~~~~~~ 269 (285)
T PRK14254 199 PEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGEL--VEFDDTDKIFE 269 (285)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEE--EEeCCHHHHHh
Confidence 999999999999999999999999999854 4799999999999999999976 4565433 34566666644
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=288.95 Aligned_cols=192 Identities=23% Similarity=0.354 Sum_probs=142.7
Q ss_pred CceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 82 DTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 82 ~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
+++++|+.. ...+.+++ .+++||++||+|+||||||||+++|+|+++|+.|++.. .|.++..... .
T Consensus 5 ~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~~-~ 72 (220)
T cd03263 5 NLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI-----------NGYSIRTDRK-A 72 (220)
T ss_pred eeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEecccchH-H
Confidence 455667541 23566666 45899999999999999999999999999999999842 2222111000 0
Q ss_pred HHHHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
.. -..++.+|.....+. .++.+.+ .......++.++++.++|.+.+++++.+|||||+||++||+|
T Consensus 73 ~~--~~i~~v~q~~~~~~~---~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 73 AR--QSLGYCPQFDALFDE---LTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred Hh--hhEEEecCcCCcccc---CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHH
Confidence 00 011222222111110 1111111 112234567889999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+.+|++|||||||++||+.++..+.++|+++.+ +.|||++|||++++..+||++++|+.
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSD 207 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999976 59999999999999999999999964
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=293.33 Aligned_cols=198 Identities=24% Similarity=0.299 Sum_probs=144.8
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
.|++.|+ +++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 3 ~l~~~~l--------~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~----------- 62 (241)
T PRK14250 3 EIEFKEV--------SYSSFGK-EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI----------- 62 (241)
T ss_pred eEEEEeE--------EEEeCCe-eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------
Confidence 4666665 4456532 3455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC-----chHHHHHHHHHHhhcCCc-hhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD-----QKDERDMKADLCTDLDLN-QVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~-----~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe 221 (605)
.|.++......... ...++.+|.....+ .++.+.+. ......++.++++.++|. ++.++.+.+|||||
T Consensus 63 ~g~~i~~~~~~~~~--~~i~~~~q~~~~~~----~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 136 (241)
T PRK14250 63 DGVDIKTIDVIDLR--RKIGMVFQQPHLFE----GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGE 136 (241)
T ss_pred CCEEhhhcChHHhh--hcEEEEecCchhch----hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHH
Confidence 22221111000000 01122222211111 12221111 011234678899999996 68899999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+||++||+||+.+|++|||||||++||+.++..+.+.|+++.++ |.|||+||||++++..+||+|++|+.+
T Consensus 137 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 137 AQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999874 899999999999999999999999753
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=301.85 Aligned_cols=199 Identities=24% Similarity=0.347 Sum_probs=143.6
Q ss_pred CceEEeCCC----ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH
Q 040300 82 DTTHRYGPN----TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF 156 (605)
Q Consensus 82 ~~~~~yg~~----~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~ 156 (605)
+++++|+.. ...|++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|..+....
T Consensus 6 ~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~i~~~~ 74 (288)
T PRK13643 6 KVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV-----------GDIVVSSTS 74 (288)
T ss_pred EEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE-----------CCEECcccc
Confidence 345566532 12566666 46899999999999999999999999999999999852 222111000
Q ss_pred --HHHHHHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHH
Q 040300 157 --TRILEDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQR 224 (605)
Q Consensus 157 --~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QR 224 (605)
...........+.+|..+. ..+..++.+. +.....+.++.++++.++|. .++++.+.+|||||+||
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~--~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqr 152 (288)
T PRK13643 75 KQKEIKPVRKKVGVVFQFPES--QLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR 152 (288)
T ss_pred ccccHHHHHhhEEEEecCcch--hcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHH
Confidence 0000000011112221100 0011111111 11223456788999999996 58899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcc
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKP 293 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~ 293 (605)
++||+||+.+|++|||||||++||+.++..+.++|+++.++|.|||+||||++++..+||+|++|.++.
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~ 221 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGH 221 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999998779999999999999999999999997543
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=301.87 Aligned_cols=199 Identities=23% Similarity=0.327 Sum_probs=142.8
Q ss_pred ceEEeCCC----ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH-
Q 040300 83 TTHRYGPN----TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF- 156 (605)
Q Consensus 83 ~~~~yg~~----~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~- 156 (605)
++++|+.. ...|++++ .+++||+++|+|+||||||||+++|+|+++|+.|++.. .|..+....
T Consensus 8 l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~i~~~~~ 76 (290)
T PRK13634 8 VEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-----------GERVITAGKK 76 (290)
T ss_pred EEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE-----------CCEECccccc
Confidence 45566531 23566666 46899999999999999999999999999999999852 222111000
Q ss_pred -HHHHHHHHHHhhcccccc-cc-hhhhhchhhh-----hcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHH
Q 040300 157 -TRILEDNLKAIIKPQYVD-HI-PKAVQGNVGQ-----VLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAI 227 (605)
Q Consensus 157 -~~~~~~~~~~~~~~q~~~-~~-~~~~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaI 227 (605)
.....-.-...+.+|... .+ +..+..++.. .+......+++.++++.++|. .++++++.+|||||+||++|
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 77 NKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred cchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHH
Confidence 000000001111222110 00 0011111100 011223346788999999997 67899999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++..+||+|++|+++
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G 222 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKG 222 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999764 899999999999999999999999754
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=287.02 Aligned_cols=193 Identities=26% Similarity=0.418 Sum_probs=141.4
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+++| +++|+|+||||||||+++|+|+++|+.|++.. .|.++.... ...
T Consensus 5 ~~~~~~~~~-~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-----------~g~~~~~~~-~~~ 70 (211)
T cd03264 5 NLTKRYGKK-RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRI-----------DGQDVLKQP-QKL 70 (211)
T ss_pred EEEEEECCE-EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEE-----------CCCccccch-HHH
Confidence 355666543 2455555 34689 99999999999999999999999999999852 222211110 000
Q ss_pred HHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
.. ..++.+|.....+. .+...+.. . ....+..+++.++++.++|.+.+++.+.+|||||+||++||+||+.+
T Consensus 71 ~~--~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 148 (211)
T cd03264 71 RR--RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGD 148 (211)
T ss_pred Hh--heEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence 01 11222332221111 11111110 0 11122345678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+.
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNK 204 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999986 59999999999999999999999964
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=287.34 Aligned_cols=174 Identities=26% Similarity=0.323 Sum_probs=133.1
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|.++..... . ....++.+|.....+.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~-----------~g~~~~~~~~--~--~~~i~~~~q~~~~~~~- 84 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLI-----------NGVDVTAAPP--A--DRPVSMLFQENNLFAH- 84 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEEcCcCCH--h--HccEEEEecccccCCC-
Confidence 4799999999999999999999999999999998752 1211111000 0 0011112222111111
Q ss_pred hhchhhhhc--------C-chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 040300 180 VQGNVGQVL--------D-QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK 250 (605)
Q Consensus 180 ~~~~v~~~l--------~-~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~ 250 (605)
.++.+.+ . ....+.++.++++.++|.+.+++.+.+|||||+||++||+||+.+|++|||||||++||+.
T Consensus 85 --~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~ 162 (211)
T cd03298 85 --LTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162 (211)
T ss_pred --CcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 0111111 0 1123456889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 251 QRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 251 ~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++..+.+.|+++.++ +.|||+||||++++..+||++++|.+
T Consensus 163 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03298 163 LRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDN 204 (211)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEEC
Confidence 999999999999764 89999999999999999999999974
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=304.71 Aligned_cols=208 Identities=18% Similarity=0.261 Sum_probs=143.7
Q ss_pred ceEEeCCC----ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCC-Chhhhhh------hhccc
Q 040300 83 TTHRYGPN----TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP-DWQEILT------YFRGS 150 (605)
Q Consensus 83 ~~~~yg~~----~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~-~~~~~~~------~~~g~ 150 (605)
++++|+.. ...|.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.... +...... ...+.
T Consensus 8 l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 87 (305)
T PRK13651 8 IVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKL 87 (305)
T ss_pred EEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccccccccc
Confidence 45566432 12455565 4579999999999999999999999999999999975310 0000000 00000
Q ss_pred hhhhh--H--HHHHHHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCc-hhhcccCCC
Q 040300 151 ELQNY--F--TRILEDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLN-QVIDRNVGD 216 (605)
Q Consensus 151 ~l~~~--~--~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~ 216 (605)
.+... . .....-.....+.+|..+. ..+..++.+. +......+++.++++.+||. +++++++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~--~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 165 (305)
T PRK13651 88 VIQKTRFKKIKKIKEIRRRVGVVFQFAEY--QLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFE 165 (305)
T ss_pred ccccccccccchHHHHHhceEEEeeCccc--ccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhh
Confidence 00000 0 0000000111222332100 0011122221 11223456789999999996 789999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||+|||+||+||+.+|++|||||||++||+..+..+.++|+++.+.|.|||+||||++++..+||+|++|..+
T Consensus 166 LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G 241 (305)
T PRK13651 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241 (305)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999877999999999999999999999999654
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=295.74 Aligned_cols=189 Identities=23% Similarity=0.339 Sum_probs=139.9
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|.++....
T Consensus 7 l~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~----- 69 (255)
T PRK11248 7 LYADYGGK-PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL-----------DGKPVEGPG----- 69 (255)
T ss_pred EEEEeCCe-eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEECCCCC-----
Confidence 45566542 3455555 35799999999999999999999999999999999852 111110000
Q ss_pred HHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 162 DNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
....+.+|.....+. .+..++.. . +.......++.++++.++|.+.+++++.+|||||+||++||+||+.+|
T Consensus 70 --~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 70 --AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred --CcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 000111121111110 01111100 0 111223456889999999999899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
++|||||||++||+..+..+.+.|+++.+ .|.|||+||||++++..+||++++|+
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~ 203 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLS 203 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999854 58999999999999999999999997
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=312.72 Aligned_cols=212 Identities=22% Similarity=0.319 Sum_probs=154.6
Q ss_pred eEEEecCCcccCCCc----------------eEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCC
Q 040300 69 AIQIINLPKDLDKDT----------------THRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNL 131 (605)
Q Consensus 69 ai~i~nl~~~~~~~~----------------~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~ 131 (605)
+|++.||.+-|+.+. .+.||.. ..+++++ .+.+||+++|+|+||||||||+|+|+|+++|+.
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLS-LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCe-EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 577777776655532 3455543 4567776 468999999999999999999999999999999
Q ss_pred ceeeCCCChhhhhhhhccchhhhhHHHHHHH--HHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhh
Q 040300 132 GRFNNPPDWQEILTYFRGSELQNYFTRILED--NLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTD 203 (605)
Q Consensus 132 G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~--~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~ 203 (605)
|+|. +.|.++..+....... .....+.+|.....+. .+..++.. . +.....++++.++++.
T Consensus 83 G~I~-----------i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~ 151 (400)
T PRK10070 83 GQVL-----------IDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQ 151 (400)
T ss_pred CEEE-----------ECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9984 2232222111000000 0011222332222221 11111110 0 1122334678899999
Q ss_pred cCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhh
Q 040300 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYL 282 (605)
Q Consensus 204 l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~ 282 (605)
+||.+.+++++.+|||||+|||+|||||+.+|++|||||||++||+..+..+.++|+++.+ .++|||+||||++++..+
T Consensus 152 ~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 152 VGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred cCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999975 489999999999999999
Q ss_pred cCEEEEEeCc
Q 040300 283 SDFICCLYGK 292 (605)
Q Consensus 283 ~D~i~vl~g~ 292 (605)
||+|++|.++
T Consensus 232 ~Dri~vL~~G 241 (400)
T PRK10070 232 GDRIAIMQNG 241 (400)
T ss_pred CCEEEEEECC
Confidence 9999999753
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=290.25 Aligned_cols=200 Identities=19% Similarity=0.279 Sum_probs=158.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC--------cc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP--------EF 413 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~--------~~ 413 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+. ..
T Consensus 10 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 83 (249)
T PRK14253 10 DLFYGE-NQALKSINLPIPAR-----QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI 83 (249)
T ss_pred EEEECC-eeeeecceEEecCC-----CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHh
Confidence 667765 34689999998888 78999999999999999999999986 588765 22211 23
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
.++|++|+.... ..|+.+++...... .... ...+.++++.+++. +..++++.+|||||+|||+|||||+.
T Consensus 84 ~i~~~~q~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (249)
T PRK14253 84 KVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM 162 (249)
T ss_pred heeEEecCCCcC-cccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence 599999987544 47998887532111 1111 12345677778764 46788999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+|++|||||||+|||+.++..+.++|+++.+ +.|||+||||++++..+|||+++|+++... ..++++++..
T Consensus 163 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~--~~g~~~~~~~ 233 (249)
T PRK14253 163 EPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELV--EHDDTQVIFS 233 (249)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEE--EeCCHHHHHc
Confidence 9999999999999999999999999999853 589999999999999999999999865532 4466666643
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=299.37 Aligned_cols=196 Identities=26% Similarity=0.295 Sum_probs=140.6
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhh--hhHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ--NYFTRI 159 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~--~~~~~~ 159 (605)
++++|+.. ..+.+++ .+.+||+++|+|+||||||||+|+|+|+++|+.|++... |..+. ......
T Consensus 7 l~~~~~~~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~-----------g~~i~~~~~~~~~ 74 (271)
T PRK13638 7 LWFRYQDE-PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQ-----------GKPLDYSKRGLLA 74 (271)
T ss_pred EEEEcCCc-ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEEC-----------CEEcccccCCHHH
Confidence 45566532 2455555 357999999999999999999999999999999988421 11110 000000
Q ss_pred HHHHHHHhhccccccc-ch-hhhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 160 LEDNLKAIIKPQYVDH-IP-KAVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~-~~-~~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
.. -..++.+|.... .. ..+..++.. . ........++.++++.+++.+..++++.+|||||+||++||+||+
T Consensus 75 ~~--~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 75 LR--QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred HH--hheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHH
Confidence 00 001111221100 00 000001100 0 111223456788999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.+|++|||||||++||+..+..+.++|+++.++|.|||+||||++++..+||++++|..+
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G 212 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQG 212 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999867899999999999999999999999653
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=300.94 Aligned_cols=189 Identities=24% Similarity=0.348 Sum_probs=137.3
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH--HHHHHHHHHHhhc
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF--TRILEDNLKAIIK 169 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~--~~~~~~~~~~~~~ 169 (605)
.+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++... |..+.... ...........+.
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~-----------g~~~~~~~~~~~~~~~~~~ig~v 90 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIA-----------GYHITPETGNKNLKKLRKKVSLV 90 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC-----------CEECccccccchHHHHHhceEEE
Confidence 455555 458999999999999999999999999999999988521 11110000 0000000001111
Q ss_pred ccccc--cchhhhhchhh---h--hcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 040300 170 PQYVD--HIPKAVQGNVG---Q--VLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFD 241 (605)
Q Consensus 170 ~q~~~--~~~~~~~~~v~---~--~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllD 241 (605)
+|... ..+..+...+. . ........+++.++++.+||+ .+.++++.+|||||+||++||+||+.+|++||||
T Consensus 91 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLD 170 (287)
T PRK13641 91 FQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLD 170 (287)
T ss_pred EeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 11100 00000011110 0 011223455788999999997 6899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 242 EPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 242 EPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||++||+..+..+.++|+++.+.|.|||+||||++++..+||++++|+.+
T Consensus 171 EPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G 221 (287)
T PRK13641 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHG 221 (287)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999767999999999999999999999999753
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=319.73 Aligned_cols=200 Identities=18% Similarity=0.249 Sum_probs=160.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC--Ceeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP--DSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p--~~G~i~--~~~~~--------~~~i~ 416 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+. ...++
T Consensus 8 ~~~~~~-~~il~~isl~i~~G-----e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 8 VKTFGG-VKALDGIDLEVRPG-----ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EEEeCC-eEeecceEEEEeCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 677765 34789999999988 68999999999999999999999987 789875 22211 13599
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc-----CCC---CHHHHHHHHhhcCCchhh-ccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD-----SYT---HPQFVSDVMKPLLIEQLM-DQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~-----~~~---~~~~~~~~l~~l~l~~~~-~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
|+||+.......|+.+++...... ... ....+.++++.+++.+.. ++++.+|||||||||+|||||+.+|+
T Consensus 82 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~ 161 (500)
T TIGR02633 82 IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQAR 161 (500)
T ss_pred EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 999987655567999887532110 011 123467889999998654 67899999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
+|||||||+|||+.++..+.++|+++.+ .|.|||+||||++++..+||||++|+.+.. ...++++++
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i--~~~~~~~~~ 228 (500)
T TIGR02633 162 LLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQH--VATKDMSTM 228 (500)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeE--eeecCcccC
Confidence 9999999999999999999999999854 589999999999999999999999985443 233444443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=309.95 Aligned_cols=189 Identities=21% Similarity=0.300 Sum_probs=143.6
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHH--HHHHhhc
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED--NLKAIIK 169 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~--~~~~~~~ 169 (605)
.+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++. +.|.++..+....+.. .....+.
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~-----------i~G~~i~~~~~~~~~~~rr~~i~~v 76 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIF-----------IDGENIMKQSPVELREVRRKKIGMV 76 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEE-----------ECCEECCcCCHHHHHHHHhCcEEEE
Confidence 455555 3579999999999999999999999999999999984 2333322211100000 1122334
Q ss_pred ccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 040300 170 PQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEP 243 (605)
Q Consensus 170 ~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEP 243 (605)
+|.....|. .+..++.. . .......+++.++++.+||+++.++++.+|||||+|||+|||||+.+|++||||||
T Consensus 77 ~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 77 FQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred ECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 444333332 22222211 1 11223456789999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 244 SSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 244 ts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|++||+..+.++.+.|.++.++ ++|||+||||++++..+||+|++|+++
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G 206 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAG 206 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999764 899999999999999999999999753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=289.40 Aligned_cols=201 Identities=20% Similarity=0.290 Sum_probs=158.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC--C---Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK--P---DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~--p---~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+.+ | ++|++. +.... .
T Consensus 12 ~~~~~~-~~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14255 12 HLFYGK-FEALKGIDLDFNQN-----EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLR 85 (252)
T ss_pred EEEECC-eeEEecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhc
Confidence 677875 34689999998888 7899999999999999999999975 5 478874 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCC----HHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTH----PQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~----~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++..... ..... ...+.+.++.+++ .+..++++.+|||||+|||+|||||+
T Consensus 86 ~~i~~~~q~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~ 164 (252)
T PRK14255 86 KQVGMVFQQPNPF-PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA 164 (252)
T ss_pred CeEEEEECCCccC-CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence 3599999986543 3699887753211 11111 1234556777765 35678999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.+|++|||||||++||+.++..+.++|+++.. +.|+|+||||++++..+|||+++|+++.. ...+++.+++..
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~~ 237 (252)
T PRK14255 165 VKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNL--IEFADTKQMFLN 237 (252)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 99999999999999999999999999999853 58999999999999999999999986554 345777776543
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=284.98 Aligned_cols=193 Identities=26% Similarity=0.361 Sum_probs=140.4
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
++++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|..+.......
T Consensus 2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~ 69 (206)
T TIGR03608 2 KNISKKFGDK-IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL-----------NGKETPPLNSKK 69 (206)
T ss_pred cceEEEECCE-EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-----------CCEEccccchhh
Confidence 3567777643 3566666 45799999999999999999999999999999998742 122110000000
Q ss_pred HHH--HHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHH
Q 040300 160 LED--NLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIA 228 (605)
Q Consensus 160 ~~~--~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA 228 (605)
... .-..++.+|.....+. .++.+.+ ......+++.++++.++|.+.+++.+.+|||||+||++||
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~~---~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 70 ASKFRREKLGYLFQNFALIEN---ETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALA 146 (206)
T ss_pred HHHHHHhCeeEEecchhhccC---CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHH
Confidence 000 0011111221111110 1121111 1122345788899999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
+||+.+|++|||||||++||+.++..+.++|+++.+++.|||++||+++++. +||++++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 9999999999999999999999999999999999877899999999999775 79999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=304.88 Aligned_cols=180 Identities=26% Similarity=0.314 Sum_probs=150.7
Q ss_pred EEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC---HHH
Q 040300 379 MLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH---PQF 447 (605)
Q Consensus 379 i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~---~~~ 447 (605)
|+||||||||||+|+|+|+++|++|++. +..+. ...++|++|+......+|+.+++...... .... ...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999999999875 22221 23599999997665567999987543211 1111 235
Q ss_pred HHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 040300 448 VSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527 (605)
Q Consensus 448 ~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD 527 (605)
+.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.++.|.|+|+||||
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999876668999999999
Q ss_pred HHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 528 FIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 528 ~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++++..+|||+++|+++.. ...++|++++..
T Consensus 161 ~~e~~~~~d~i~vl~~G~i--~~~g~~~~~~~~ 191 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKI--AQIGTPEEIYEE 191 (325)
T ss_pred HHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999986543 345788887654
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=293.78 Aligned_cols=203 Identities=20% Similarity=0.286 Sum_probs=158.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--cccc-----C----c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEI-----P----E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~-----~----~ 412 (605)
.+.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+ . .
T Consensus 27 ~~~~~~~-~~l~~vs~~i~~G-----e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~ 100 (274)
T PRK14265 27 KVFYGGF-LALVDVHLKIPAK-----KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100 (274)
T ss_pred EEEeCCe-EEEeeeeeEEcCC-----CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHh
Confidence 7778753 4689999999888 78999999999999999999999863 578764 2221 0 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCC--CHHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYT--HPQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~--~~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..++|++|+.... ..|+.+++...... .+. ....+.++++.+++ .+.+++++.+|||||+|||+|||||+.+
T Consensus 101 ~~i~~v~q~~~l~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~ 179 (274)
T PRK14265 101 RQVGMVFQRPNPF-PKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMK 179 (274)
T ss_pred hcEEEEccCCccc-cccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhC
Confidence 3699999986543 45898877432111 111 12334566777776 3567899999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC-------CcceeeecCChhhhh
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG-------QPSVDCVANAPQSLL 558 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g-------~~~~~~~~~~p~~~~ 558 (605)
|++|||||||++||+.++..+.++|+++. + +.|||++|||++++..+|||+++|++ ..+.....+++++++
T Consensus 180 p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 180 PDVLLMDEPCSALDPISTRQVEELCLELK-E-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 99999999999999999999999999984 3 68999999999999999999999962 112234567888776
Q ss_pred cc
Q 040300 559 TG 560 (605)
Q Consensus 559 ~~ 560 (605)
..
T Consensus 258 ~~ 259 (274)
T PRK14265 258 GS 259 (274)
T ss_pred hC
Confidence 53
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=294.86 Aligned_cols=204 Identities=18% Similarity=0.266 Sum_probs=162.4
Q ss_pred hhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC------
Q 040300 345 ETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP------ 411 (605)
Q Consensus 345 ~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~------ 411 (605)
++. +++|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +..+.
T Consensus 25 ~nl-~~~~~~-~~il~~vs~~i~~G-----e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 25 VNL-TLGFAG-KTVLDQVSMGFPAR-----AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred eeE-EEEECC-EEEeeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 344 788875 34689999999888 78999999999999999999999986 688875 21111
Q ss_pred --cceeEeecCcCCCCCcCcHHHHHHhhhcc-C-CCC---HHHHHHHHhhcCCch----hhccCcCcCChhHHHHHHHHH
Q 040300 412 --EFNVSYKPQKISPKFQSTVRHLLHQKIRD-S-YTH---PQFVSDVMKPLLIEQ----LMDQEVVNLSGGELQRVALCL 480 (605)
Q Consensus 412 --~~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~-~~~---~~~~~~~l~~l~l~~----~~~~~~~~LSGGe~QRvaiA~ 480 (605)
...++|++|+... +..|+.+++...... . ... ...+.++++.+++.. .+++.+.+|||||+|||+|||
T Consensus 98 ~~~~~i~~v~q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 98 EFRRRVGMLFQRPNP-FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred HHhhheEEeccCCcc-CCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 2358999998654 347999877532111 1 111 123456788888863 467889999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 481 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+|||+++|+++.. ...++++++.+.
T Consensus 177 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i--~~~g~~~~~~~~ 252 (276)
T PRK14271 177 TLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRL--VEEGPTEQLFSS 252 (276)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 99999999999999999999999999999999853 48999999999999999999999986543 345778877654
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=309.86 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=148.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.. ..+++++ .+.+||+++|+|+|||||||||++|+|+++|+.|+|..
T Consensus 14 ~L~l~~l~--------~~~~~~-~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~----------- 73 (375)
T PRK09452 14 LVELRGIS--------KSFDGK-EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIML----------- 73 (375)
T ss_pred eEEEEEEE--------EEECCe-EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE-----------
Confidence 46666654 456532 1344444 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhhc-----CchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQVL-----DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~l-----~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|..+..... ......+.+|.....|. .+..++...+ ......+++.++++.++|++++++++.+|||||
T Consensus 74 ~g~~i~~~~~----~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq 149 (375)
T PRK09452 74 DGQDITHVPA----ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQ 149 (375)
T ss_pred CCEECCCCCH----HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence 2222211000 00111222332222222 1111221111 122335678899999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||+|||||+.+|++||||||||+||+..|..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 150 ~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G 221 (375)
T PRK09452 150 QQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDG 221 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999875 899999999999999999999999753
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=287.46 Aligned_cols=192 Identities=31% Similarity=0.404 Sum_probs=141.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH--H
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT--R 158 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~--~ 158 (605)
+++++|+.. .+ +++ .+.+ |+++|+|+||||||||+++|+|+++|+.|++.. .|.++..... .
T Consensus 5 ~l~~~~~~~--~~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~ 69 (214)
T cd03297 5 DIEKRLPDF--TL-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL-----------NGTVLFDSRKKIN 69 (214)
T ss_pred eeeEecCCe--ee-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEecccccchhh
Confidence 466777653 23 555 3578 999999999999999999999999999998742 2222110000 0
Q ss_pred HHHHHHHHhhcccccccchhhhhchhhhhc-------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 159 ILEDNLKAIIKPQYVDHIPKAVQGNVGQVL-------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l-------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.....-..++.+|.....+. .++.+.+ .....++++.++++.+++.+..++++.+|||||+||++||+||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~---~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 146 (214)
T cd03297 70 LPPQQRKIGLVFQQYALFPH---LNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL 146 (214)
T ss_pred hhhHhhcEEEEecCCccCCC---CCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH
Confidence 00000011222332211111 0121111 1122345678899999999989999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+.++..+.++|++++++ |.|||++|||++++..+||++++|..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMED 207 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999875 89999999999999999999999964
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=268.53 Aligned_cols=194 Identities=26% Similarity=0.412 Sum_probs=148.5
Q ss_pred CCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC--------CChhhhhhhhccchh
Q 040300 81 KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP--------PDWQEILTYFRGSEL 152 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~--------~~~~~~~~~~~g~~l 152 (605)
+++.+.|+.-.|.++ +. +..||+++|+||+|||||||+++|+|.+.|.+|.+... |.-..+...|....
T Consensus 5 ~~V~~~y~~~~~~fd-l~-v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnN- 81 (231)
T COG3840 5 DDVRFSYGHLPMRFD-LT-VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENN- 81 (231)
T ss_pred cceEEeeCcceEEEE-Ee-ecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccc-
Confidence 357888987755442 22 35899999999999999999999999999999987421 11111111122111
Q ss_pred hhhHHHH-HHHHHHHhhcccccccchhhhhchhhhhcC-chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 153 QNYFTRI-LEDNLKAIIKPQYVDHIPKAVQGNVGQVLD-QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 153 ~~~~~~~-~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~-~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
.|..+ ++.++.....|. ++ ...++++++.++..+||..+++|.+.+|||||||||||||+
T Consensus 82 --LFaHLtV~qNigLGl~P~----------------LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARc 143 (231)
T COG3840 82 --LFAHLTVAQNIGLGLSPG----------------LKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARC 143 (231)
T ss_pred --cchhhhhhhhhcccCCcc----------------cccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHH
Confidence 11111 122222211111 11 24567889999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCcccc
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGKPGA 295 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~~~~ 295 (605)
|+++-.|++||||+|.|||.-|.++..++.++..+ +.|++||||.++.+..++|++++++.+..+
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~ 209 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA 209 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE
Confidence 99999999999999999999999999999999865 899999999999999999999999754433
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=298.81 Aligned_cols=195 Identities=25% Similarity=0.326 Sum_probs=142.7
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.....+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|.++.........
T Consensus 9 l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~~~ 77 (277)
T PRK13652 9 LCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI-----------RGEPITKENIREVR 77 (277)
T ss_pred EEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------CCEECCcCCHHHHH
Confidence 4556643333566666 45799999999999999999999999999999999852 22211110000000
Q ss_pred HHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
. ...+.+|.... ..+..++.+. +.....++++.++++.++|.+.+++.+.+|||||+||++||+||+
T Consensus 78 ~--~i~~v~q~~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 78 K--FVGLVFQNPDD--QIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred h--heEEEecCccc--ccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 0 01111121100 0000111111 112223456789999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.+|++|||||||++||+.++..+.++|+++.++ |.|||++|||++++..+||++++|+.+
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999875 899999999999999999999999643
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=273.70 Aligned_cols=157 Identities=25% Similarity=0.281 Sum_probs=133.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
.+.|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.. .....++|++|+... +..
T Consensus 7 ~~~~~~~~~~l~~i~l~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~--~~~~~i~~~~q~~~~-~~~ 78 (166)
T cd03223 7 SLATPDGRVLLKDLSFEIKPG-----DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM--PEGEDLLFLPQRPYL-PLG 78 (166)
T ss_pred EEEcCCCCeeeecCeEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE--CCCceEEEECCCCcc-ccc
Confidence 667754334688999999888 789999999999999999999999999999751 112579999998653 456
Q ss_pred cHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040300 429 TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAK 508 (605)
Q Consensus 429 tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~ 508 (605)
|+.+++... .+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+
T Consensus 79 tv~~nl~~~--------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~ 132 (166)
T cd03223 79 TLREQLIYP--------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132 (166)
T ss_pred cHHHHhhcc--------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH
Confidence 888876321 468999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 509 VIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 509 ~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
+|+++ +.|+|+||||.+++ .+|||+++|+++
T Consensus 133 ~l~~~----~~tiiivsh~~~~~-~~~d~i~~l~~~ 163 (166)
T cd03223 133 LLKEL----GITVISVGHRPSLW-KFHDRVLDLDGE 163 (166)
T ss_pred HHHHh----CCEEEEEeCChhHH-hhCCEEEEEcCC
Confidence 99885 58999999999876 589999999854
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=299.03 Aligned_cols=201 Identities=23% Similarity=0.306 Sum_probs=147.0
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+ +++|+.....+++++ .+++||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 5 ~l~~~~l--------~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i----------- 65 (283)
T PRK13636 5 ILKVEEL--------NYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF----------- 65 (283)
T ss_pred eEEEEeE--------EEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEE-----------
Confidence 5666665 456643223556666 45799999999999999999999999999999999852
Q ss_pred ccchhh--hhHHHHHHHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 148 RGSELQ--NYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 148 ~g~~l~--~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|..+. ........ -...+.+|.... ..+..++.+. +......+++.++++.+||.+..++++.+
T Consensus 66 ~g~~~~~~~~~~~~~~--~~ig~v~q~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 141 (283)
T PRK13636 66 DGKPIDYSRKGLMKLR--ESVGMVFQDPDN--QLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHC 141 (283)
T ss_pred CCEECCCCcchHHHHH--hhEEEEecCcch--hhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCccc
Confidence 222110 00000000 011122222100 0001112111 11223346788999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||++|||++++..+||++++|..+
T Consensus 142 LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G 218 (283)
T PRK13636 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218 (283)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999865 899999999999999999999999643
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=299.35 Aligned_cols=189 Identities=21% Similarity=0.349 Sum_probs=138.2
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH--HHHHHHHHHhhc
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT--RILEDNLKAIIK 169 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~~~ 169 (605)
.|++++ .+++||++||+|+||||||||+++|+|+++|+.|++.. .|..+..... ....-....++.
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~-----------~g~~i~~~~~~~~~~~~~~~ig~v 90 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV-----------DDITITHKTKDKYIRPVRKRIGMV 90 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-----------CCEECccccccchHHHHHhheEEE
Confidence 566666 46899999999999999999999999999999998842 2221110000 000000011122
Q ss_pred ccccc--cchhhhhchhhh-----hcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 040300 170 PQYVD--HIPKAVQGNVGQ-----VLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFD 241 (605)
Q Consensus 170 ~q~~~--~~~~~~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllD 241 (605)
+|... ..+..+...+.. .+......+++.++++.+||. +..++.+.+|||||+||++||+||+.+|++||||
T Consensus 91 ~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlD 170 (286)
T PRK13646 91 FQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD 170 (286)
T ss_pred ecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 22110 001011111100 012223456788999999997 7889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 242 EPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 242 EPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||++||+.++..+.++|+++.+ .|.|||+||||++++..+||+|++|+.+
T Consensus 171 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G 222 (286)
T PRK13646 171 EPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEG 222 (286)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999975 4899999999999999999999999754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=298.33 Aligned_cols=199 Identities=25% Similarity=0.370 Sum_probs=145.8
Q ss_pred eEEEecCCcccCCCceEEeCCC--ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN--TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~--~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
+|++.|+.+ +|+.. ...|.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 4 ~l~~~~l~~--------~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~--------- 66 (279)
T PRK13650 4 IIEVKNLTF--------KYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII--------- 66 (279)
T ss_pred eEEEEeEEE--------EcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE---------
Confidence 577777654 55421 23455565 45799999999999999999999999999999998842
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccc-cchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCC
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVD-HIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
.|..+......... -...+.+|... .++ ..++.+. +......+++.++++.+||++..++.+.
T Consensus 67 --~g~~i~~~~~~~~~--~~i~~v~q~~~~~~~---~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 139 (279)
T PRK13650 67 --DGDLLTEENVWDIR--HKIGMVFQNPDNQFV---GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPA 139 (279)
T ss_pred --CCEECCcCcHHHHH--hhceEEEcChHHhcc---cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcc
Confidence 22221110000000 01112222110 011 0112111 1122345678899999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++. .||+|++|+++
T Consensus 140 ~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G 216 (279)
T PRK13650 140 RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNG 216 (279)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999875 999999999999995 79999999754
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=290.17 Aligned_cols=201 Identities=24% Similarity=0.357 Sum_probs=143.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+.+ +|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++...
T Consensus 2 ~i~~~~l~~--------~~~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~---------- 62 (242)
T TIGR03411 2 ILYLEGLSV--------SFDGF-KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFG---------- 62 (242)
T ss_pred eEEEEeeEE--------EcCCe-EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC----------
Confidence 466666544 55432 2344554 357999999999999999999999999999999988522
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh----------hc---CchHHHHHHHHHHhhcCCchhhccc
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ----------VL---DQKDERDMKADLCTDLDLNQVIDRN 213 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~----------~l---~~~~~~~~~~~~l~~l~L~~~~dr~ 213 (605)
|..+......... .....+.+|.....+. .+...+.. .+ .....+.++.++++.+|+.+..++.
T Consensus 63 -g~~~~~~~~~~~~-~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 140 (242)
T TIGR03411 63 -GTDLTGLPEHQIA-RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL 140 (242)
T ss_pred -CeecCCCCHHHHH-hcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC
Confidence 1111100000000 0001112222111111 00000000 00 0122355788999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|||||+|||+||+||+.+|++|||||||++||+.++..+.++|+++.+ ++|||+||||++++..+||++++|+.
T Consensus 141 ~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 141 AGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999999976 79999999999999999999999964
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=293.39 Aligned_cols=200 Identities=18% Similarity=0.260 Sum_probs=160.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++| ++|++. +.... .
T Consensus 32 ~~~~~~~-~il~~vs~~i~~G-----e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~ 105 (272)
T PRK14236 32 NLFYGDK-QALFDISMRIPKN-----RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELR 105 (272)
T ss_pred EEEECCe-eEeeeEEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHh
Confidence 7777653 4689999998888 78999999999999999999999874 789875 21111 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+.... ..|+.+++..... ..... ...+.++++.+++. ...++.+.+|||||+|||+|||||+
T Consensus 106 ~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 184 (272)
T PRK14236 106 RRVGMVFQRPNPF-PKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA 184 (272)
T ss_pred ccEEEEecCCccC-cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 3689999986543 4599888753211 11111 23466778888885 3678899999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++|++|||||||+|||+.++..+.++|+++. + +.|+|++|||++++..+|||+++|+++.. ...+++.++.+
T Consensus 185 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 256 (272)
T PRK14236 185 IEPEVLLLDEPTSALDPISTLKIEELITELK-S-KYTIVIVTHNMQQAARVSDYTAFMYMGKL--VEYGDTDTLFT 256 (272)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-CCeEEEEeCCHHHHHhhCCEEEEEECCEE--EecCCHHHHhc
Confidence 9999999999999999999999999999985 3 68999999999999999999999986543 34577777654
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=293.62 Aligned_cols=195 Identities=28% Similarity=0.403 Sum_probs=142.7
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+.+++ .+++|++++|+|+||||||||+++|+|+++|+.|++... |.++..+......
T Consensus 8 l~~~~~~~-~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~-----------g~~~~~~~~~~~~ 75 (255)
T PRK11231 8 LTVGYGTK-RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG-----------DKPISMLSSRQLA 75 (255)
T ss_pred EEEEECCE-EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEEC-----------CEEhHHCCHHHHh
Confidence 45567643 3466666 458999999999999999999999999999999987521 2111110000000
Q ss_pred HHHHHhhcccccccchh-hhhchhh-------hhcC--chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 162 DNLKAIIKPQYVDHIPK-AVQGNVG-------QVLD--QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~-~~~~~v~-------~~l~--~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
. ..++.+|.....+. .+...+. ..+. ......++.++++.++|.+.+++.+.+|||||+||++||+||
T Consensus 76 ~--~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 76 R--RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred h--heEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHH
Confidence 0 11122222111110 0000000 0011 122345678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|++|||||||++||+.++..+.++|+++.+++.|||++|||++++..+||++++|++
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 213 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLAN 213 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999977789999999999999999999999964
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=283.81 Aligned_cols=185 Identities=21% Similarity=0.328 Sum_probs=147.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----------Cccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----------PEFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----------~~~~i 415 (605)
.+.|+.....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +... ....+
T Consensus 7 ~~~~~~~~~il~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 7 YFSWGSGLATLSNINIRIPTG-----QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred EEecCCCCcceeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 677874445789999999888 78999999999999999999999999999875 1111 01358
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchh-----------hccCcCcCChhHHHHHHHHHHHcc
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQL-----------MDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
+|++|+... +..|+.+++..... . ......++++.+++.+. +++++.+|||||+|||+|||||+.
T Consensus 82 ~~~~q~~~~-~~~t~~~nl~~~~~--~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 82 AYAAQKPWL-LNATVEENITFGSP--F-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred EEEcCCCcc-ccccHHHHHhhcCc--C-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 999998754 46799888753211 1 22334556666666543 346789999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHH--HHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAK--VIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~--~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
+|++|||||||++||+.++..+++ +++.+ .+.+.|+|++|||++++. .||++++++++
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~~~tii~~sH~~~~~~-~~d~i~~l~~G 217 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDDKRTLVLVTHKLQYLP-HADWIIAMKDG 217 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcCCCEEEEEeCChHHHh-hCCEEEEecCC
Confidence 999999999999999999999998 66665 456899999999999986 59999999753
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=288.14 Aligned_cols=198 Identities=24% Similarity=0.387 Sum_probs=152.0
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|
T Consensus 7 ~~~~~~~~~~~~l~~i~~~i~~G-----e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (238)
T cd03249 7 SFRYPSRPDVPILKGLSLTIPPG-----KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGL 81 (238)
T ss_pred EEecCCCCCccceeceEEEecCC-----CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEE
Confidence 5666531 23688999998888 78999999999999999999999999999875 22111 135999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhh---------c--CCchhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKP---------L--LIEQLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~---------l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
++|+... +..|+.+++...... .......+.++. + ++....++++.+|||||+|||+|||||+.+|
T Consensus 82 ~~q~~~~-~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 82 VSQEPVL-FDGTIAENIRYGKPD--ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred ECCchhh-hhhhHHHHhhccCCC--CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 9998654 346898887432111 111122222222 2 4444567788999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++|||||||++||+.++..+++.|+++. .|.|||++|||++++. +||++++|+++.. ...++++++..
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i--~~~~~~~~~~~ 226 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTIR-NADLIAVLQNGQV--VEQGTHDELMA 226 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHh-hCCEEEEEECCEE--EEeCCHHHHhh
Confidence 9999999999999999999999999984 5899999999999997 7999999986543 34466666544
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=301.32 Aligned_cols=192 Identities=21% Similarity=0.361 Sum_probs=144.5
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+...... .
T Consensus 7 ~l~~~~~~~-~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i-----------~g~~~~~~~~~-~ 73 (301)
T TIGR03522 7 SLTKLYGTQ-NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV-----------CGEDVLQNPKE-V 73 (301)
T ss_pred EEEEEECCE-EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEcccChHH-H
Confidence 355677643 3566666 46899999999999999999999999999999999852 22221110000 0
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.-..++.+|.....+.. ++.+.+ ......++++++++.+||.+..++.+.+|||||+||++||+||
T Consensus 74 --~~~ig~~~q~~~l~~~~---tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 74 --QRNIGYLPEHNPLYLDM---YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred --HhceEEecCCCCCCCCC---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHH
Confidence 00112223321111110 121111 1122345788999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|++|||||||++||+.++.++++.|+++.+ ++|||++||+++++..+||+|++|+.+
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G 208 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKG 208 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999965 799999999999999999999999653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=286.99 Aligned_cols=198 Identities=22% Similarity=0.321 Sum_probs=152.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
.++|++....+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +..+. ...++|++
T Consensus 7 ~~~~~~~~~~l~~i~~~i~~G-----e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 81 (236)
T cd03253 7 TFAYDPGRPVLKDVSFTIPAG-----KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVP 81 (236)
T ss_pred EEEeCCCCceeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEEC
Confidence 566753234688999998888 78999999999999999999999999999875 22211 13489999
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhh---------c--CCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKP---------L--LIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~---------l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
|+... +..|+.+++...... . ......+.++. + ++....++++.+|||||+|||+|||||+.+|++
T Consensus 82 q~~~~-~~~tv~~nl~~~~~~-~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 82 QDTVL-FNDTIGYNIRYGRPD-A-TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred CCChh-hcchHHHHHhhcCCC-C-CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99654 467999887432111 1 11222222232 2 444556677899999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|||||||+|||+.++..+.++|+++. + |.|||++|||.+++.. |||+++|+.+.. ...++++++..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i--~~~~~~~~~~~ 224 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLSTIVN-ADKIIVLKDGRI--VERGTHEELLA 224 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHh-CCEEEEEECCEE--EeeCCHHHHhh
Confidence 99999999999999999999999984 4 8999999999999975 999999986543 34466666544
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=290.19 Aligned_cols=195 Identities=26% Similarity=0.348 Sum_probs=143.8
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhh------hh
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ------NY 155 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~------~~ 155 (605)
++++|+.. -.+++++ .+.+||+++|+|+||||||||+|+|+|+++|+.|++.. .|.++. ..
T Consensus 8 l~~~~~~~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~~ 75 (242)
T PRK11124 8 INCFYGAH-QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI-----------AGNHFDFSKTPSDK 75 (242)
T ss_pred eEEEECCe-eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEecccccccchh
Confidence 45566543 3466666 46899999999999999999999999999999999852 222110 00
Q ss_pred HHHHHHHHHHHhhcccccccchh-hhhchhhh----h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHH
Q 040300 156 FTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ----V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIA 228 (605)
Q Consensus 156 ~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~----~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA 228 (605)
..... ....++.+|.....+. .+..++.. . ........++.++++.+|+.+.+++.+.+|||||+||++||
T Consensus 76 ~~~~~--~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 76 AIREL--RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hHHHH--HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 00000 0112233333222211 11111110 0 01122345678899999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+||+.+|++|||||||++||+.++..+.+.|+++.+.++|||+||||++++..+||++++|..
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~ 216 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMEN 216 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999976799999999999999999999999964
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=297.15 Aligned_cols=196 Identities=23% Similarity=0.314 Sum_probs=141.9
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.....+++++ .+++||++||+|+||||||||+++|+|+++|+.|++.. .|..+.........
T Consensus 7 l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~-----------~g~~~~~~~~~~~~ 75 (275)
T PRK13639 7 LKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI-----------KGEPIKYDKKSLLE 75 (275)
T ss_pred EEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEE-----------CCEECccccchHHH
Confidence 4556653223455555 45899999999999999999999999999999999852 22111000000000
Q ss_pred HHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
-.-..++.+|.... ..+..++.+. ......++++.++++.++|.+++++++.+|||||+||++||+||+
T Consensus 76 ~~~~i~~v~q~~~~--~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 76 VRKTVGIVFQNPDD--QLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred HHhheEEEeeChhh--hhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 00001111221100 0000111111 111223456888999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+|++|||||||++||+.++..+.++|+++.+++.|||+||||++++..+||++++|+.
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~ 212 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSD 212 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999987799999999999999999999999964
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=288.63 Aligned_cols=198 Identities=17% Similarity=0.238 Sum_probs=155.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcC--CCCCeeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl--~~p~~G~i~--~~~~~--------~~~i~ 416 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+ ++|++|++. +.... ...++
T Consensus 14 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 87 (252)
T CHL00131 14 HASVNEN-EILKGLNLSINKG-----EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIF 87 (252)
T ss_pred EEEeCCE-EeeecceeEEcCC-----cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEE
Confidence 6777653 4788999998888 78999999999999999999998 579999875 21111 12478
Q ss_pred eecCcCCCCCcCcHHHHHHhhhcc-----CCC--C----HHHHHHHHhhcCCc-hhhccCcC-cCChhHHHHHHHHHHHc
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRD-----SYT--H----PQFVSDVMKPLLIE-QLMDQEVV-NLSGGELQRVALCLCLG 483 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~-----~~~--~----~~~~~~~l~~l~l~-~~~~~~~~-~LSGGe~QRvaiA~aL~ 483 (605)
|++|+.......++.+++...... ... . ...+.++++.+++. ...++++. +|||||+|||+|||||+
T Consensus 88 ~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~ 167 (252)
T CHL00131 88 LAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMAL 167 (252)
T ss_pred EEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHH
Confidence 899986544445777765321110 000 1 13456789999997 57888887 59999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh-cCEEEEEeCCcceeeecCChh
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL-ADRVIVYEGQPSVDCVANAPQ 555 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~-adrviv~~g~~~~~~~~~~p~ 555 (605)
.+|++|||||||++||+.++..+.++|+++.+ .|.|||+||||++++..+ |||+++|+++.. ...++++
T Consensus 168 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i--~~~~~~~ 237 (252)
T CHL00131 168 LDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNGKI--IKTGDAE 237 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCCEE--EEecChh
Confidence 99999999999999999999999999999864 589999999999999887 899999986543 3445655
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=302.54 Aligned_cols=187 Identities=20% Similarity=0.292 Sum_probs=138.8
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhh-----------H---H
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNY-----------F---T 157 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~-----------~---~ 157 (605)
.|.+++ .+.+||++||+|+||||||||+++|+|+++|+.|+|... |..+... . .
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~-----------g~~~~~~~~~~~~~~~~~~~~~~ 109 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVG-----------DIYIGDKKNNHELITNPYSKKIK 109 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC-----------CEEcccccccccccccccccccc
Confidence 466666 457999999999999999999999999999999998521 1111000 0 0
Q ss_pred HHHHHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHH
Q 040300 158 RILEDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAI 227 (605)
Q Consensus 158 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaI 227 (605)
....-.-...+.+|..+. ..+..++.+. .......+++.++++.+||. +.+++.+.+|||||+||++|
T Consensus 110 ~~~~~~~~ig~v~Q~~~~--~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvai 187 (320)
T PRK13631 110 NFKELRRRVSMVFQFPEY--QLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAI 187 (320)
T ss_pred hHHHHHhcEEEEEECchh--ccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHH
Confidence 000000011222222100 0111122211 11223456788999999997 68999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+++|++|||||||++||+.++..+.++|+++.++|.|||+||||++++..+||+|++|..+
T Consensus 188 AraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999777999999999999999999999999754
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=288.10 Aligned_cols=187 Identities=20% Similarity=0.381 Sum_probs=150.5
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|
T Consensus 18 ~~~~~~~~~~~~l~~is~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 92 (226)
T cd03248 18 TFAYPTRPDTLVLQDVSFTLHPG-----EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSL 92 (226)
T ss_pred EEEeCCCCCCccccceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEE
Confidence 6777642 23688999999888 78999999999999999999999999999875 22111 235899
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccC-CCC--H----HHHHHHHhhc--CCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDS-YTH--P----QFVSDVMKPL--LIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~-~~~--~----~~~~~~l~~l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
++|+... +..|+.+++....... ... . ..+.++++.+ ++....++++.+|||||+|||+|||||+.+|++
T Consensus 93 ~~q~~~l-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~l 171 (226)
T cd03248 93 VGQEPVL-FARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQV 171 (226)
T ss_pred EecccHH-HhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9998643 4568988874321110 000 0 1134667777 788888999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|||||||++||+.++..+.++|+++. + +.|+|+||||++++.. |||+++++++
T Consensus 172 lllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~i~~l~~g 224 (226)
T cd03248 172 LILDEATSALDAESEQQVQQALYDWP-E-RRTVLVIAHRLSTVER-ADQILVLDGG 224 (226)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEECCHHHHHh-CCEEEEecCC
Confidence 99999999999999999999999974 3 6899999999999965 9999999754
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=277.96 Aligned_cols=168 Identities=33% Similarity=0.519 Sum_probs=135.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++. +.|.++..+.....
T Consensus 4 ~l~~~~~~~-~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~-----------~~g~~~~~~~~~~~ 71 (180)
T cd03214 4 NLSVGYGGR-TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL-----------LDGKDLASLSPKEL 71 (180)
T ss_pred EEEEEECCe-eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-----------ECCEECCcCCHHHH
Confidence 567777652 3566666 4689999999999999999999999999999999984 23332221100000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
... . .| +.++++.+++.+.+++.+.+|||||+||++|||||+.+|++|||
T Consensus 72 ~~~--i----~~------------------------~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 72 ARK--I----AY------------------------VPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HHH--H----hH------------------------HHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000 0 00 11177889999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||||++||+.++..+.+.|+++.++ +.|+|++||+++++..+||++++|..
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~ 173 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKD 173 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999776 89999999999999999999999974
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=298.70 Aligned_cols=202 Identities=19% Similarity=0.297 Sum_probs=162.9
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP--------- 411 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~--------- 411 (605)
+++|++ ....+++++|++.+| |++||+|+||||||||+++|+|+.+ |++|++. +..+.
T Consensus 87 s~~y~~~~~~~L~~is~~I~~G-----e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~l 161 (329)
T PRK14257 87 NFWYMNRTKHVLHDLNLDIKRN-----KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLEL 161 (329)
T ss_pred EEEecCCCceeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhh
Confidence 777753 234689999998888 7899999999999999999999986 5789875 22221
Q ss_pred cceeEeecCcCCCCCcCcHHHHHHhhhc-cCCCCH----HHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHH
Q 040300 412 EFNVSYKPQKISPKFQSTVRHLLHQKIR-DSYTHP----QFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 412 ~~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~~~----~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
...++|+||++.. +..|+++++..... ...... ..+..+++.+++. ...++++.+|||||||||+|||||
T Consensus 162 r~~i~~v~q~~~~-~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl 240 (329)
T PRK14257 162 RTRIGMVFQKPTP-FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAI 240 (329)
T ss_pred hccEEEEecCCcc-CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 2369999998754 56899998853211 112112 1246677887763 456889999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.+|+||||||||++||+.+...+.+.|+++.+ +.|+|+|||+++++..+||||++|+++.. ...++|+++++.
T Consensus 241 ~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i--~e~g~~~~l~~~ 314 (329)
T PRK14257 241 ALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWI--EEAGETKTIFIH 314 (329)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 999999999999999999999999999999853 68999999999999999999999997544 456999998764
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=281.41 Aligned_cols=182 Identities=21% Similarity=0.277 Sum_probs=151.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +.... ...++|++|
T Consensus 8 ~~~~~~~-~il~~~s~~i~~G-----e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 8 DFDYHDQ-PLLQQISFHLPAG-----GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEeCCe-eEEeeeeEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 6677653 4789999999888 78999999999999999999999999999875 22211 135899999
Q ss_pred cCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
.....+..|+.+++...... ......+.++++.+++.+..++++.+|||||+|||+|||||+.+|++|||||||++||+
T Consensus 82 ~~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~ 160 (200)
T PRK13540 82 RSGINPYLTLRENCLYDIHF-SPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE 160 (200)
T ss_pred ccccCcCCCHHHHHHHHHhc-CcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 86655568999987542211 11234578899999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEE
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 539 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrvi 539 (605)
.++..+.++|+++.+ .+.|+|+||||..++.. ||.-.
T Consensus 161 ~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 161 LSLLTIITKIQEHRA-KGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCchhccc-cchhh
Confidence 999999999999854 58999999999998865 77644
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=287.66 Aligned_cols=198 Identities=26% Similarity=0.376 Sum_probs=138.4
Q ss_pred ceEEeCCCc---eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPNT---FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~~---f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+... ..+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+..+...
T Consensus 7 v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~ 75 (228)
T cd03257 7 LSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIF-----------DGKDLLKLSRR 75 (228)
T ss_pred eeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEEccccchh
Confidence 455665331 3456666 46899999999999999999999999999999998852 12211110000
Q ss_pred -HHHHHHHHhhcccccc--cchh-hhhchhhh---hc--Cch-HHHHH-HHHHHhhcCCc-hhhcccCCCCChHHHHHHH
Q 040300 159 -ILEDNLKAIIKPQYVD--HIPK-AVQGNVGQ---VL--DQK-DERDM-KADLCTDLDLN-QVIDRNVGDLSGGELQRFA 226 (605)
Q Consensus 159 -~~~~~~~~~~~~q~~~--~~~~-~~~~~v~~---~l--~~~-~~~~~-~~~~l~~l~L~-~~~dr~v~~LSGGe~QRva 226 (605)
.....-..++.+|... ..+. .+..++.. .. ... ..... +.++++.+++. ..+++.+.+|||||+||++
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHH
Confidence 0000000111122110 0000 00111100 00 011 11122 35788999995 6889999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 227 IA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++..+||++++|.+
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 221 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYA 221 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeC
Confidence 999999999999999999999999999999999999875 89999999999999999999999974
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=290.07 Aligned_cols=203 Identities=19% Similarity=0.284 Sum_probs=146.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+ +++|+.. ..+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++..
T Consensus 3 ~l~~~~l--------~~~~~~~-~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~----------- 62 (241)
T PRK10895 3 TLTAKNL--------AKAYKGR-RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII----------- 62 (241)
T ss_pred eEEEeCc--------EEEeCCE-EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------
Confidence 4666655 4566532 3455665 45899999999999999999999999999999998852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh---h---cCchHHHHHHHHHHhhcCCchhhcccCCCCChH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ---V---LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~---l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG 220 (605)
.|..+..+..... ......+.+|.....+. .+..++.. . ......+.++.++++.+++.+..++++.+||||
T Consensus 63 ~g~~~~~~~~~~~-~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 141 (241)
T PRK10895 63 DDEDISLLPLHAR-ARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGG 141 (241)
T ss_pred CCEECCCCCHHHH-HHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHH
Confidence 1211111000000 00011222222111110 11111100 0 111223456888999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 221 e~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||++||+||+.+|++|||||||++||+.++..+.+.|+++.++|.|||++|||++++..+||++++|..+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G 213 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQG 213 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877999999999999999999999999643
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=303.41 Aligned_cols=205 Identities=22% Similarity=0.335 Sum_probs=146.3
Q ss_pred eEEEecCCcccCCCceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC----CCceeeCCCCh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP----NLGRFNNPPDW 140 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p----~~G~i~~~~~~ 140 (605)
.|+|.||.+ .|+.. .-.|++++ .+.+||++||+|+||||||||+++|+|+++| +.|++.
T Consensus 3 ~L~v~~l~~--------~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~----- 69 (326)
T PRK11022 3 LLNVDKLSV--------HFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLE----- 69 (326)
T ss_pred eEEEeCeEE--------EECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEE-----
Confidence 467776654 55432 12466666 4689999999999999999999999999974 778874
Q ss_pred hhhhhhhccchhhhhHHHHHHHHH--HHhhcccccc--cchhh-hhchhhhh------cCchHHHHHHHHHHhhcCCc--
Q 040300 141 QEILTYFRGSELQNYFTRILEDNL--KAIIKPQYVD--HIPKA-VQGNVGQV------LDQKDERDMKADLCTDLDLN-- 207 (605)
Q Consensus 141 ~~~~~~~~g~~l~~~~~~~~~~~~--~~~~~~q~~~--~~~~~-~~~~v~~~------l~~~~~~~~~~~~l~~l~L~-- 207 (605)
+.|.++............ ...+.+|... ..|.. +...+.+. ......++++.++++.+||.
T Consensus 70 ------~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~ 143 (326)
T PRK11022 70 ------FNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP 143 (326)
T ss_pred ------ECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh
Confidence 233322211110000000 0122222210 11111 00111111 11233456789999999996
Q ss_pred -hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCE
Q 040300 208 -QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 208 -~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~ 285 (605)
..+++++.+|||||+|||+||+||+.+|++||+||||++||+..+..++++|+++.+ .|.|+|+||||++++.++||+
T Consensus 144 ~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 144 ASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred HHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 367999999999999999999999999999999999999999999999999999986 489999999999999999999
Q ss_pred EEEEeCc
Q 040300 286 ICCLYGK 292 (605)
Q Consensus 286 i~vl~g~ 292 (605)
|++||.+
T Consensus 224 i~vm~~G 230 (326)
T PRK11022 224 IIVMYAG 230 (326)
T ss_pred EEEEECC
Confidence 9999854
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=289.49 Aligned_cols=193 Identities=26% Similarity=0.364 Sum_probs=140.3
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|.++........
T Consensus 7 l~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~-----------~g~~i~~~~~~~~- 73 (236)
T TIGR03864 7 LSFAYGAR-RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV-----------AGHDLRRAPRAAL- 73 (236)
T ss_pred eEEEECCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE-----------CCEEcccCChhhh-
Confidence 45566532 3456665 45899999999999999999999999999999998852 2221111000000
Q ss_pred HHHHHhhcccccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 162 DNLKAIIKPQYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
. ..++.+|.....+. .+...+. .. .........+.++++.+||.+.+++.+.+|||||+||++||+||+.+|
T Consensus 74 ~--~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 74 A--RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred h--hEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 0 11222222111110 0111110 00 111223456788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++|||||||++||+..+..+.+.|+++.+ .|.|||++|||++++.. ||++++|+.
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~ 207 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHR 207 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeC
Confidence 99999999999999999999999999975 58999999999999975 999999964
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=265.73 Aligned_cols=182 Identities=28% Similarity=0.404 Sum_probs=158.8
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeecCcCCCCC
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKPQKISPKF 426 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~q~~~~~~ 426 (605)
.+.++++||++.+| |+++|+||+|||||||+|+++-++.|++|.+. +..+. +..|+|+.|.+. .|
T Consensus 16 a~il~~isl~v~~G-----e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa-Lf 89 (223)
T COG4619 16 AKILNNISLSVRAG-----EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA-LF 89 (223)
T ss_pred CeeecceeeeecCC-----ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcc-cc
Confidence 45789999999988 68999999999999999999999999999875 33222 235999999875 47
Q ss_pred cCcHHHHHHh--hhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040300 427 QSTVRHLLHQ--KIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503 (605)
Q Consensus 427 ~~tv~~~~~~--~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~ 503 (605)
..||++++.. .++....+...+.+.++++++. .++++++.+|||||+||+||+|-|..-|+|||||||||+||+.++
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nk 169 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhH
Confidence 7899998743 2233334566778899999998 588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 504 IVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 504 ~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
+.+.++|-++.+++..++++||||-+.+.+.+|++|-+..
T Consensus 170 r~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~ 209 (223)
T COG4619 170 RNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP 209 (223)
T ss_pred HHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEecc
Confidence 9999999999988899999999999999999999999874
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=293.68 Aligned_cols=202 Identities=29% Similarity=0.406 Sum_probs=145.9
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.. ..+++++ .+++||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 11 ~l~i~~l~--------~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~----------- 70 (265)
T PRK10575 11 TFALRNVS--------FRVPGR-TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL----------- 70 (265)
T ss_pred eEEEeeEE--------EEECCE-EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE-----------
Confidence 56666654 456432 3455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh-------hc--CchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ-------VL--DQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~-------~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
.|..+.......... ..++.+|.....+. .+..++.. .+ .......++.++++.++|.+.+++.+.+|
T Consensus 71 ~g~~~~~~~~~~~~~--~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 148 (265)
T PRK10575 71 DAQPLESWSSKAFAR--KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148 (265)
T ss_pred CCEehhhCCHHHHhh--heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccC
Confidence 222111100000000 11122222111111 11111100 00 01223456788999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|.++
T Consensus 149 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999765 899999999999999999999999753
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=273.95 Aligned_cols=155 Identities=30% Similarity=0.477 Sum_probs=130.5
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 7 ~~~~~~~~~~~l~~~~~~i~~G-----e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (173)
T cd03246 7 SFRYPGAEPPVLRNVSFSIEPG-----ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYL 81 (173)
T ss_pred EEEcCCCCCcceeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEE
Confidence 6667642 23688999998888 78999999999999999999999999999875 22111 2358999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
+|+... +..|+.+++ |||||+|||+|||||+.+|++|||||||++|
T Consensus 82 ~q~~~~-~~~tv~~~l---------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~L 127 (173)
T cd03246 82 PQDDEL-FSGSIAENI---------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHL 127 (173)
T ss_pred CCCCcc-ccCcHHHHC---------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCcccc
Confidence 998643 334666553 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|+.++..++++|+++.+ .|.|+|+||||++++. +|||+++|+++
T Consensus 128 D~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~-~~d~v~~l~~G 171 (173)
T cd03246 128 DVEGERALNQAIAALKA-AGATRIVIAHRPETLA-SADRILVLEDG 171 (173)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence 99999999999999854 5899999999999885 79999999854
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=288.46 Aligned_cols=200 Identities=17% Similarity=0.249 Sum_probs=158.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC--C---Ceeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK--P---DSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~--p---~~G~i~--~~~~~---------~ 412 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+.. | ++|++. +..+. .
T Consensus 13 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (253)
T PRK14261 13 NLWYGEK-HALYDITISIPKN-----RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALR 86 (253)
T ss_pred EEEECCe-eeeeeeEEEECCC-----cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhh
Confidence 6777653 4689999999888 7899999999999999999999976 3 479875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc--cCCC---CHHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR--DSYT---HPQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~---~~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|++|+... +..|+++++..... .... ....+.++++.+++. ...++.+.+|||||+|||+|||||+
T Consensus 87 ~~i~~~~q~~~~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 165 (253)
T PRK14261 87 RKIGMVFQRPNP-FPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA 165 (253)
T ss_pred ceEEEEecCCcc-CcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh
Confidence 358999998654 34699998753211 1111 123456778888774 4578999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+|||+++++++.. ...++++++..
T Consensus 166 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 237 (253)
T PRK14261 166 VNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKL--IEFDKTTQIFE 237 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEE--EEcCCHHHHHh
Confidence 99999999999999999999999999999853 58999999999999999999999986543 35577777654
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=289.27 Aligned_cols=194 Identities=23% Similarity=0.307 Sum_probs=140.6
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC-----CceeeCCCChhhhhhhhccchhhhh-
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN-----LGRFNNPPDWQEILTYFRGSELQNY- 155 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-----~G~i~~~~~~~~~~~~~~g~~l~~~- 155 (605)
++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+ .|++.. .|..+...
T Consensus 7 l~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~-----------~g~~~~~~~ 74 (247)
T TIGR00972 7 LNLFYGEK-EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF-----------DGQDIYDKK 74 (247)
T ss_pred EEEEECCe-eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE-----------CCEEccccc
Confidence 44566543 2455555 35799999999999999999999999999998 998852 22211100
Q ss_pred -HHHHHHHHHHHhhcccccccchhhhhchhh---hh---cCchHHHHHHHHHHhhcCCc----hhhcccCCCCChHHHHH
Q 040300 156 -FTRILEDNLKAIIKPQYVDHIPKAVQGNVG---QV---LDQKDERDMKADLCTDLDLN----QVIDRNVGDLSGGELQR 224 (605)
Q Consensus 156 -~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~---~~---l~~~~~~~~~~~~l~~l~L~----~~~dr~v~~LSGGe~QR 224 (605)
...... -...+.+|.....+..+..++. .. .......+++.++++.+||. +.+++++.+|||||+||
T Consensus 75 ~~~~~~~--~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 75 IDVVELR--RRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQR 152 (247)
T ss_pred cchHHHH--hheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHH
Confidence 000000 0112223322111111111111 00 11123345678899999998 78899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++||+||+.+|++|||||||++||+..+..+.++|+++.+ +.|||+||||++++..+||++++|+.
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYD 218 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999977 48999999999999999999999974
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=286.76 Aligned_cols=199 Identities=18% Similarity=0.207 Sum_probs=152.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~--~~~~~--------~~~i~ 416 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|++ +|++|++. +.... ...++
T Consensus 8 ~~~~~~~-~~l~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (248)
T PRK09580 8 HVSVEDK-AILRGLNLEVRPG-----EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIF 81 (248)
T ss_pred EEEeCCe-eeeecceeEEcCC-----CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceE
Confidence 6677653 4688999998888 789999999999999999999995 69999875 22111 13489
Q ss_pred eecCcCCCCCcCcHHHHHHhh---hc---c-CCCC----HHHHHHHHhhcCCc-hhhccCcC-cCChhHHHHHHHHHHHc
Q 040300 417 YKPQKISPKFQSTVRHLLHQK---IR---D-SYTH----PQFVSDVMKPLLIE-QLMDQEVV-NLSGGELQRVALCLCLG 483 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~---~~---~-~~~~----~~~~~~~l~~l~l~-~~~~~~~~-~LSGGe~QRvaiA~aL~ 483 (605)
|++|+.......++..+.... .. . .... ..++.++++.+++. ...++.+. +|||||+|||+|||||+
T Consensus 82 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (248)
T PRK09580 82 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 161 (248)
T ss_pred EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 999986543333443332110 00 0 0001 23456788888995 56777775 89999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh-cCEEEEEeCCcceeeecCChhh
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL-ADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~-adrviv~~g~~~~~~~~~~p~~ 556 (605)
++|++|||||||++||+.++..+.++|+++.. .++|||+||||++++..+ ||++++++++... ..++++.
T Consensus 162 ~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~--~~g~~~~ 232 (248)
T PRK09580 162 LEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV--KSGDFTL 232 (248)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE--EeCCHHH
Confidence 99999999999999999999999999999854 589999999999999987 8999999865432 3455553
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=309.30 Aligned_cols=199 Identities=24% Similarity=0.327 Sum_probs=146.9
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+.+ +|+.. ..+++++ .+.+||+++|+|||||||||||++|+|+++|+.|++..
T Consensus 19 ~l~l~~v~~--------~~~~~-~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i----------- 78 (377)
T PRK11607 19 LLEIRNLTK--------SFDGQ-HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML----------- 78 (377)
T ss_pred eEEEEeEEE--------EECCE-EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE-----------
Confidence 477766544 55532 2344444 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|..+.+... ..-...+.+|.....|. .+..++... ......++++.++++.++|.+++++++.+|||||
T Consensus 79 ~g~~i~~~~~----~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq 154 (377)
T PRK11607 79 DGVDLSHVPP----YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQ 154 (377)
T ss_pred CCEECCCCCH----HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence 2221111000 00011222222222221 111111110 1122345678899999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+|||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.
T Consensus 155 ~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~ 225 (377)
T PRK11607 155 RQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNR 225 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999998764 89999999999999999999999974
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=309.02 Aligned_cols=197 Identities=23% Similarity=0.295 Sum_probs=143.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH--H
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT--R 158 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~--~ 158 (605)
+++++|+.. .+ +++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|.++..... .
T Consensus 4 ~l~~~~~~~--~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~-----------~g~~i~~~~~~~~ 69 (354)
T TIGR02142 4 RFSKRLGDF--SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVL-----------NGRTLFDSRKGIF 69 (354)
T ss_pred EEEEEECCE--EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEECccCccccc
Confidence 577788753 23 444 35799999999999999999999999999999999742 1211110000 0
Q ss_pred HHHHHHHHhhcccccccchh-hhhchhhhh---cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 159 ILEDNLKAIIKPQYVDHIPK-AVQGNVGQV---LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~---l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
.........+.+|.....+. .+..++... ........++.++++.++|.+.+++++.+|||||||||+||+||+.+
T Consensus 70 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 70 LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred cchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 00000011222232221111 111111100 01122345688999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|++|||||||++||+..+..+.++|+++.++ |.|||+||||++++..+||++++|+.+
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G 208 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDG 208 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999875 899999999999999999999999653
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=292.41 Aligned_cols=203 Identities=24% Similarity=0.368 Sum_probs=144.0
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+ +++|+.. ..+.+++ .+.+|++++|+|+||||||||+++|+|+++|+.|++...
T Consensus 5 ~l~~~~l--------~~~~~~~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~---------- 65 (255)
T PRK11300 5 LLSVSGL--------MMRFGGL-LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR---------- 65 (255)
T ss_pred eEEEeeE--------EEEECCE-EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEEC----------
Confidence 4666665 4466532 3455665 457999999999999999999999999999999987521
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhh-------------hh-----cC--chHHHHHHHHHHhhcCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVG-------------QV-----LD--QKDERDMKADLCTDLDL 206 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~-------------~~-----l~--~~~~~~~~~~~l~~l~L 206 (605)
|..+........ ......+.+|.....+. .+..++. .. +. ......++.++++.+||
T Consensus 66 -g~~~~~~~~~~~-~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 143 (255)
T PRK11300 66 -GQHIEGLPGHQI-ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL 143 (255)
T ss_pred -CEECCCCCHHHH-HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh
Confidence 111100000000 00000111111111110 0000000 00 00 01223467788999999
Q ss_pred chhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCE
Q 040300 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 207 ~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~ 285 (605)
.+.+++++.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|.++.++ +.|||++||+++++..+||+
T Consensus 144 ~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~ 223 (255)
T PRK11300 144 LEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDR 223 (255)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999875 89999999999999999999
Q ss_pred EEEEeCc
Q 040300 286 ICCLYGK 292 (605)
Q Consensus 286 i~vl~g~ 292 (605)
+++|..+
T Consensus 224 i~~l~~g 230 (255)
T PRK11300 224 IYVVNQG 230 (255)
T ss_pred EEEEECC
Confidence 9999753
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=294.82 Aligned_cols=199 Identities=26% Similarity=0.343 Sum_probs=145.9
Q ss_pred eEEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+|++.||.+ +|+.. ...+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 5 ~l~~~~l~~--------~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~---------- 66 (279)
T PRK13635 5 IIRVEHISF--------RYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV---------- 66 (279)
T ss_pred eEEEEEEEE--------EeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE----------
Confidence 577777654 55431 23455555 45799999999999999999999999999999999852
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccc-cchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVD-HIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|.++......... -...+.+|... ..+ ..++.+. ......++++.++++.+||.+..++.+.+
T Consensus 67 -~g~~i~~~~~~~~~--~~i~~~~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 140 (279)
T PRK13635 67 -GGMVLSEETVWDVR--RQVGMVFQNPDNQFV---GATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHR 140 (279)
T ss_pred -CCEECCcCcHHHHh--hheEEEEeCHHHhcc---cccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCccc
Confidence 22221110000000 00111122110 000 0112111 11223356788999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++.. ||++++|+++
T Consensus 141 LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G 216 (279)
T PRK13635 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKG 216 (279)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999875 8999999999999975 9999999754
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=279.51 Aligned_cols=181 Identities=25% Similarity=0.398 Sum_probs=144.8
Q ss_pred eeecCCc----eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCC
Q 040300 349 RYKYPTM----VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISP 424 (605)
Q Consensus 349 ~~~y~~~----~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~ 424 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +.. +++|++|++..
T Consensus 7 ~~~~~~~~~~~~~il~~~s~~i~~G-----~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~---~~g-~i~~~~q~~~l 77 (204)
T cd03250 7 SFTWDSGEQETSFTLKDINLEVPKG-----ELVAIVGPVGSGKSSLLSALLGELEKLSGSVS---VPG-SIAYVSQEPWI 77 (204)
T ss_pred EEecCCCCccccceeeeeeEEECCC-----CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEE---EcC-EEEEEecCchh
Confidence 6677653 24788999999888 68999999999999999999999999999975 222 69999999764
Q ss_pred CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCC-----------chhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLI-----------EQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
+..|+++++..... + ......+.++.+++ +...++.+.+|||||+|||+|||||+.+|+++||||
T Consensus 78 -~~~t~~enl~~~~~--~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDE 153 (204)
T cd03250 78 -QNGTIRENILFGKP--F-DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDD 153 (204)
T ss_pred -ccCcHHHHhccCCC--c-CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 46799998754211 1 12223334444433 334566789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 494 PSAYLDSEQRIVAAK-VIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~-~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
||++||+.++..+.+ +++++.+ .+.|||++||+++++.. ||++++|+++
T Consensus 154 P~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~~~~~-~d~i~~l~~G 203 (204)
T cd03250 154 PLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQLLPH-ADQIVVLDNG 203 (204)
T ss_pred ccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHHHHhh-CCEEEEEeCC
Confidence 999999999999988 5666644 48999999999999988 9999999853
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=300.27 Aligned_cols=213 Identities=24% Similarity=0.302 Sum_probs=148.3
Q ss_pred eEEEecCCcccCCCce-EEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTT-HRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~-~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.|++.||.+.|...-. +..+.....+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~---------- 74 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYY---------- 74 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEE----------
Confidence 5778877664421100 00000113466666 46899999999999999999999999999999999852
Q ss_pred hccchhhhhHHHHHHH-HHHHhhcccccc--cchhh-hhchhhh------hcCchHHHHHHHHHHhhcCCc-hhhcccCC
Q 040300 147 FRGSELQNYFTRILED-NLKAIIKPQYVD--HIPKA-VQGNVGQ------VLDQKDERDMKADLCTDLDLN-QVIDRNVG 215 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~-~~~~~~~~q~~~--~~~~~-~~~~v~~------~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~ 215 (605)
.|.++.......... .-...+.+|... ..|.. +...+.+ .+.....+.++.++++.+||. ..+++++.
T Consensus 75 -~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~ 153 (327)
T PRK11308 75 -QGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH 153 (327)
T ss_pred -CCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCc
Confidence 222221110000000 001111222110 01110 0001111 012223456789999999996 57899999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||+|||+||+||+.+|++||+||||++||+..+.+++++|+++.++ |.|||+||||++++.++||+|++|+.+
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G 231 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLG 231 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999875 999999999999999999999999754
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=296.96 Aligned_cols=187 Identities=22% Similarity=0.349 Sum_probs=136.5
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH----HHHHHHHHHHh
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF----TRILEDNLKAI 167 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~----~~~~~~~~~~~ 167 (605)
.|++++ .+++|++++|+|+||||||||+++|+|+++|+.|++.. .|.++.... ..... ....
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~-----------~g~~i~~~~~~~~~~~~~--~~i~ 88 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRV-----------DDTLITSTSKNKDIKQIR--KKVG 88 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEccccccccCHHHHH--hheE
Confidence 455555 45799999999999999999999999999999999842 121111000 00000 0011
Q ss_pred hccccc--ccchhhhhchhh---hh--cCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 168 IKPQYV--DHIPKAVQGNVG---QV--LDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 168 ~~~q~~--~~~~~~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
+.+|.. ...+..+..++. .. ........++.++++.++|. ..+++++.+|||||+||++||+||+.+|++||
T Consensus 89 ~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 89 LVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 122211 000001111110 00 11222345678899999997 57899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||++||+..+..+.++|+++.++++|||+||||++++..+||++++|.++
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 221 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKG 221 (280)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999777899999999999999999999999753
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=309.93 Aligned_cols=198 Identities=21% Similarity=0.282 Sum_probs=161.8
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC----eeeee--ccc-----------cCcceeEeec
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD----SVEDS--DVE-----------IPEFNVSYKP 419 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~----~G~i~--~~~-----------~~~~~i~y~~ 419 (605)
..++++||++.+| |++||+|.+||||||++++|.|++++. +|++. +.+ .....|+|+|
T Consensus 23 ~~v~~vsf~v~~G-----E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~ 97 (539)
T COG1123 23 PAVRDVSFEVEPG-----EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIF 97 (539)
T ss_pred eeeecceEEecCC-----cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEe
Confidence 4688999999988 799999999999999999999999987 68874 111 1234699999
Q ss_pred CcCCCC--CcCcHHHHHHhhh--ccCC---CCHHHHHHHHhhcCCchhh--ccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 420 QKISPK--FQSTVRHLLHQKI--RDSY---THPQFVSDVMKPLLIEQLM--DQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 420 q~~~~~--~~~tv~~~~~~~~--~~~~---~~~~~~~~~l~~l~l~~~~--~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
|++... ..+|+.+-+.... .... .....+.++++.++|.+-. +++|++|||||||||+||+||+.+|+|||
T Consensus 98 Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLI 177 (539)
T COG1123 98 QDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLI 177 (539)
T ss_pred cCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEE
Confidence 996432 2246654332211 1111 1234577899999998544 45999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+||||++||+..+.+++++|+++.++.|.++|+||||+..+.++||||+||..+.. ...|++++++...
T Consensus 178 aDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i--VE~G~~~~i~~~p 246 (539)
T COG1123 178 ADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI--VETGPTEEILSNP 246 (539)
T ss_pred ECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE--EEecCHHHHHhcc
Confidence 99999999999999999999999988999999999999999999999999997554 4669999998864
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=288.24 Aligned_cols=202 Identities=16% Similarity=0.245 Sum_probs=159.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--cccc-----C----c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEI-----P----E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~-----~----~ 412 (605)
.+.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+++| ++|++. +..+ . .
T Consensus 15 ~~~~~~-~~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 88 (261)
T PRK14263 15 KIFYGN-FMAVRDSHVPIRKN-----EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVR 88 (261)
T ss_pred EEEeCC-EEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhh
Confidence 566765 34688999998888 78999999999999999999999987 688875 2221 1 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc-cCCC--CHHHHHHHHhhcCCch----hhccCcCcCChhHHHHHHHHHHHccC
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR-DSYT--HPQFVSDVMKPLLIEQ----LMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~--~~~~~~~~l~~l~l~~----~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..++|++|+... +..|+.+++..... ..+. ....+.++++.+++.. ..++++.+|||||+||++|||||+++
T Consensus 89 ~~i~~v~q~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~ 167 (261)
T PRK14263 89 RYIGMVFQQPNP-FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATE 167 (261)
T ss_pred hceEEEecCCcc-ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 358999998754 46899988753211 1111 1235677889988853 45678899999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC------CcceeeecCChhhhhc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG------QPSVDCVANAPQSLLT 559 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g------~~~~~~~~~~p~~~~~ 559 (605)
|++|||||||+|||+.++..+.++|+++. + +.|+|++|||++++..+|||+++|+. ..+.....++++++++
T Consensus 168 p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 168 PEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHh
Confidence 99999999999999999999999999984 3 68999999999999999999999950 0122245577777654
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=308.35 Aligned_cols=204 Identities=18% Similarity=0.210 Sum_probs=159.1
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCC
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKF 426 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~ 426 (605)
.+.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... .++.+......
T Consensus 28 ~~~~~~~~~~~IL~nVSfsI~~G-----EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~---I~G~~-~~i~~~~~l~~ 98 (549)
T PRK13545 28 FFRSKDGEYHYALNNISFEVPEG-----EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD---IKGSA-ALIAISSGLNG 98 (549)
T ss_pred EEecCCCccceEEeeeEEEEeCC-----CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEE---ECCEe-eeEEeccccCC
Confidence 5666543 23688999998888 78999999999999999999999999999975 11111 12222222334
Q ss_pred cCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040300 427 QSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQ 502 (605)
Q Consensus 427 ~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~ 502 (605)
..|+++++..... ..... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 99 ~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~s 178 (549)
T PRK13545 99 QLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTF 178 (549)
T ss_pred CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 5689887643111 11111 1235678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccccc
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF 564 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~ 564 (605)
+..++++|+++. +.|.|||+||||++++..+|||+++++++.. ...+++++++.....|
T Consensus 179 r~~LlelL~el~-~~G~TIIIVSHdl~~i~~l~DrIivL~~GkI--v~~G~~~el~~~~~~~ 237 (549)
T PRK13545 179 TKKCLDKMNEFK-EQGKTIFFISHSLSQVKSFCTKALWLHYGQV--KEYGDIKEVVDHYDEF 237 (549)
T ss_pred HHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhhHHHH
Confidence 999999999985 4589999999999999999999999986543 3557787776654333
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=291.62 Aligned_cols=203 Identities=24% Similarity=0.356 Sum_probs=147.1
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.+|++.|+. ++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 6 ~~l~i~~l~--------~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~---------- 66 (265)
T PRK10253 6 ARLRGEQLT--------LGYGKY-TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL---------- 66 (265)
T ss_pred cEEEEEEEE--------EEECCE-EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEE----------
Confidence 367777654 466542 3456666 45799999999999999999999999999999998852
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh-------hc--CchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ-------VL--DQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~-------~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|..+..+....... ..++.+|.....+. .+...+.. .+ .......++.++++.++|.+..++.+.+
T Consensus 67 -~g~~~~~~~~~~~~~--~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (265)
T PRK10253 67 -DGEHIQHYASKEVAR--RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDT 143 (265)
T ss_pred -CCEEhhhCCHHHHhh--heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc
Confidence 222211110000000 11222222111110 00000000 00 0122345678899999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||+||++||+||+.+|++|||||||++||+..+..+.++|+++.++ +.|||++|||++++..+||++++|+++
T Consensus 144 LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999864 899999999999999999999999753
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=307.69 Aligned_cols=205 Identities=24% Similarity=0.413 Sum_probs=168.7
Q ss_pred hheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeE
Q 040300 346 TYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVS 416 (605)
Q Consensus 346 ~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~ 416 (605)
+. ++.|++....+++++|++.+| +.++|+|+||||||||+++|+|+.+|++|++. +.+.. ...++
T Consensus 325 ~l-~~~y~~g~~~l~~l~~t~~~g-----~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 325 NL-SFRYPDGKPALSDLNLTIKAG-----QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred ce-EEecCCCCcccCCceeEecCC-----cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 44 899998766789999999998 68999999999999999999999999999986 22222 23599
Q ss_pred eecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhcc----------CcCcCChhHHHHHHHHHHHccCC
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ----------EVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~----------~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
|++|++. .|..|+++|+..... ..+.+.+.++++..++.++.++ .-..|||||+|||++||||.+++
T Consensus 399 ~v~Q~p~-lf~gTireNi~l~~~--~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 399 WVSQNPY-LFAGTIRENILLARP--DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeCCCCc-cccccHHHHhhccCC--cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999974 478899999865322 2344566777777777655443 33459999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccccc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF 564 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~ 564 (605)
++|||||||+|||.++...+.+.|.++.+ ++|+|+|||++..+.. +|+|+||+++.. ...|+++++....+.|
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~~-~D~I~vld~G~l--~~~g~~~~L~~~~~~y 548 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAAD-ADRIVVLDNGRL--VEQGTHEELSEKQGLY 548 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHhc-CCEEEEecCCce--eccCCHHHHhhcCcHH
Confidence 99999999999999999999999999864 6999999999999876 999999996553 4679999987765444
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=287.84 Aligned_cols=198 Identities=24% Similarity=0.344 Sum_probs=141.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+++||++||+|+||||||||+++|+|+++|+.|++.. .|..+........
T Consensus 5 ~l~~~~~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~ 72 (230)
T TIGR03410 5 NLNVYYGQS-HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL-----------DGEDITKLPPHER 72 (230)
T ss_pred eEEEEeCCe-EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE-----------CCEECCCCCHHHH
Confidence 456667643 3455565 45899999999999999999999999999999999852 2221111100000
Q ss_pred HHHHHHhhcccccccchh-hhhchhhhh--cCchHHHHHHHHHHhhcC-CchhhcccCCCCChHHHHHHHHHHHHccCCC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQV--LDQKDERDMKADLCTDLD-LNQVIDRNVGDLSGGELQRFAIAVVAVQNAE 236 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~~--l~~~~~~~~~~~~l~~l~-L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~ 236 (605)
. ....++.+|.....+. .+...+... .......+.+.++++.++ +.+..++++.+|||||+||++||+||+.+|+
T Consensus 73 ~-~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 73 A-RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred H-HhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0 0012222332222221 111111100 001112334577788887 6778899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 237 IYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 237 vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
++||||||++||+.++.++.++|+++.++ +.|||++|||++++..+||++++|+.+
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g 208 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERG 208 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999874 899999999999999999999999753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=287.48 Aligned_cols=177 Identities=24% Similarity=0.342 Sum_probs=133.5
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh-
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK- 178 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~- 178 (605)
+.+|+++||+|+||||||||+++|+|+++|+.|++... |..+..+... ....++.+|.....+.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~-----------g~~~~~~~~~----~~~i~~~~q~~~~~~~~ 86 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLN-----------GQDHTTTPPS----RRPVSMLFQENNLFSHL 86 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC-----------CeecCcCChh----hccEEEEecccccccCC
Confidence 37999999999999999999999999999999988521 2111110000 0011222222111111
Q ss_pred hhhchhhhh----c-CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 040300 179 AVQGNVGQV----L-DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRL 253 (605)
Q Consensus 179 ~~~~~v~~~----l-~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~ 253 (605)
.+..++... . .......++.++++.+||++.+++.+.+|||||+||++||+|++.+|++|||||||++||+.++.
T Consensus 87 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 166 (232)
T PRK10771 87 TVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166 (232)
T ss_pred cHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 111111000 0 01223456889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 254 KAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 254 ~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+.++|+++.++ |.|||+||||++++..+||++++|..
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 205 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVAD 205 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999764 89999999999999999999999964
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=293.44 Aligned_cols=194 Identities=25% Similarity=0.378 Sum_probs=141.1
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.+...+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++.. .|..+.... .
T Consensus 12 l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~i~~~~----~ 76 (272)
T PRK15056 12 VTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI-----------LGQPTRQAL----Q 76 (272)
T ss_pred EEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEhHHhh----c
Confidence 4556643233456666 45799999999999999999999999999999999852 121111000 0
Q ss_pred HHHHHhhccccccc---chhhhhchhh-------hhc--CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHH
Q 040300 162 DNLKAIIKPQYVDH---IPKAVQGNVG-------QVL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 162 ~~~~~~~~~q~~~~---~~~~~~~~v~-------~~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~ 229 (605)
....++.+|.... .+..+...+. ..+ .......++.++++.+||.+..++++.+|||||+||++||+
T Consensus 77 -~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~lar 155 (272)
T PRK15056 77 -KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLAR 155 (272)
T ss_pred -cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHH
Confidence 0001111221100 0000000000 000 11223456778999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 230 aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||+.+|++|||||||++||+.++..+.++|++++++|.|||+||||++++..+||++++++|+
T Consensus 156 aL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~ 218 (272)
T PRK15056 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGT 218 (272)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCE
Confidence 999999999999999999999999999999999877899999999999999999999888654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=290.91 Aligned_cols=196 Identities=29% Similarity=0.469 Sum_probs=143.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+++||+++|+|+||||||||+++|+|+++|+.|++.. .|..+..+.....
T Consensus 6 ~l~~~~~~~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-----------~g~~~~~~~~~~~ 73 (256)
T TIGR03873 6 RVSWSAGGR-LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL-----------AGVDLHGLSRRAR 73 (256)
T ss_pred eEEEEECCE-EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE-----------CCEEcccCCHHHH
Confidence 355566543 3566666 45899999999999999999999999999999998752 2222111100000
Q ss_pred HHHHHHhhcccccccchh-hhhchhh-------hhc--CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVG-------QVL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~-------~~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
.. ..++.+|.....+. .+..++. ... ......+++.++++.+++.++.++.+.+|||||+||++||+|
T Consensus 74 ~~--~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 74 AR--RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred hh--heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 00 11222222111110 0011110 000 111234567889999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+.+|+++||||||++||+..+..+.++|+++.+++.|||++|||++++..+||+|++|..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDG 212 (256)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999987789999999999999999999999964
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=287.02 Aligned_cols=202 Identities=17% Similarity=0.263 Sum_probs=162.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--c------ccc---C----cc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--D------VEI---P----EF 413 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~------~~~---~----~~ 413 (605)
+++|++. ..+.+++|++.+| |+++|+||||||||||+++|+|+.+|++|++. + ... + ..
T Consensus 17 ~~~~~~~-~~l~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~ 90 (257)
T PRK14246 17 YLYINDK-AILKDITIKIPNN-----SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRK 90 (257)
T ss_pred EEecCCc-eeEeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhc
Confidence 6778763 4689999998888 78999999999999999999999999987642 1 111 1 23
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
.++|++|+.......|+.+++...... .... ...+.++++.+++. +..++.+..||||||||++|||||+.
T Consensus 91 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~ 170 (257)
T PRK14246 91 EVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL 170 (257)
T ss_pred ceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 589999987655557999887532211 1111 13456788899985 46788999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|+++||||||++||+.++..+.++|.++. + +.|||+||||+.++..+|||+++++++.. ...++++++.+.
T Consensus 171 ~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i--~~~g~~~~~~~~ 242 (257)
T PRK14246 171 KPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EIAIVIVSHNPQQVARVADYVAFLYNGEL--VEWGSSNEIFTS 242 (257)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CcEEEEEECCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999999999999984 3 68999999999999999999999986543 345777776653
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=292.03 Aligned_cols=211 Identities=25% Similarity=0.396 Sum_probs=146.7
Q ss_pred EEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-CC----CceeeCCC-C---
Q 040300 70 IQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-PN----LGRFNNPP-D--- 139 (605)
Q Consensus 70 i~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-p~----~G~i~~~~-~--- 139 (605)
++|.||...|... +..--.+++++ .+++||++||||+|||||||+.+.|.|+++ |+ .|++.... +
T Consensus 2 L~v~nL~v~f~~~-----~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~ 76 (316)
T COG0444 2 LEVKNLSVSFPTD-----AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS 76 (316)
T ss_pred ceEeeeEEEEecC-----CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCccccc
Confidence 5677776543221 01112455555 358999999999999999999999999998 43 35543110 0
Q ss_pred -hhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhh--c-CchHHHHHHHHHHhhcCCch---hhcc
Q 040300 140 -WQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQV--L-DQKDERDMKADLCTDLDLNQ---VIDR 212 (605)
Q Consensus 140 -~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~--l-~~~~~~~~~~~~l~~l~L~~---~~dr 212 (605)
-++.+..++|.++...|+... .++.|-+ .+-..+...+... . .+.+.++++.++|+.+||.+ .+++
T Consensus 77 l~~~~~~~iRG~~I~mIfQ~p~-----~sLnPv~--~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~ 149 (316)
T COG0444 77 LSEKELRKIRGKEIAMIFQDPM-----TSLNPVM--TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKS 149 (316)
T ss_pred CCHHHHHhhcCceEEEEEcCch-----hhcCChh--hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhh
Confidence 011222345554333222110 0111100 0000000111100 1 12334678999999999973 7899
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++.+|||||+|||+||.||+.+|++||.||||++||+..+.+++++|++|.+ .|.++|+||||+.++.++||||.|||.
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYa 229 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYA 229 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEEC
Confidence 9999999999999999999999999999999999999999999999999997 599999999999999999999999985
Q ss_pred c
Q 040300 292 K 292 (605)
Q Consensus 292 ~ 292 (605)
+
T Consensus 230 G 230 (316)
T COG0444 230 G 230 (316)
T ss_pred c
Confidence 4
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=292.02 Aligned_cols=190 Identities=25% Similarity=0.366 Sum_probs=139.1
Q ss_pred eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH-HHHHHHhhc
Q 040300 92 FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL-EDNLKAIIK 169 (605)
Q Consensus 92 f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~-~~~~~~~~~ 169 (605)
..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+..+..... ...-...+.
T Consensus 25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~i~~~~~~~~~~~~~~i~~v 93 (265)
T TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF-----------RGQDLYQLDRKQRRAFRRDVQLV 93 (265)
T ss_pred EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEEccccCHHHHHHHhhceEEE
Confidence 4566666 46899999999999999999999999999999999852 2222111100000 000011222
Q ss_pred ccccc-cc-hh-hhhchhh---h---hcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 170 PQYVD-HI-PK-AVQGNVG---Q---VLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 170 ~q~~~-~~-~~-~~~~~v~---~---~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
+|... .+ +. .+...+. . .+.......++.++++.+||. ..+++++.+|||||+||++||+||+.+|++||
T Consensus 94 ~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~ill 173 (265)
T TIGR02769 94 FQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIV 173 (265)
T ss_pred ecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 22210 00 00 0111110 0 011123346788999999996 68899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||++||+..+..+.++|+++.++ |.|||+||||++.+..+||++++|+++
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G 227 (265)
T TIGR02769 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227 (265)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCC
Confidence 99999999999999999999999875 899999999999999999999999753
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=281.49 Aligned_cols=185 Identities=21% Similarity=0.303 Sum_probs=149.3
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C----cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P----EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~----~~~i~y~ 418 (605)
+++|+.. ...+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +... + ...++|+
T Consensus 9 ~~~~~~~~~~~l~~i~~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (221)
T cd03244 9 SLRYRPNLPPVLKNISFSIKPG-----EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISII 83 (221)
T ss_pred EEecCCCCcccccceEEEECCC-----CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEE
Confidence 6667532 24688999999888 68999999999999999999999999999875 2111 1 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhh-----------ccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLM-----------DQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
+|+.. .+..|+.+++... .. .....+.++++.+++.+.. ++.+.+|||||+|||+|||||+.+|+
T Consensus 84 ~q~~~-l~~~tv~enl~~~--~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 84 PQDPV-LFSGTIRSNLDPF--GE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred CCCCc-cccchHHHHhCcC--CC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99876 3456998887421 11 1233455566666665544 46899999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
++||||||++||+.++..++++|+++. + +.|||++|||++++.. ||++++|+++.
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~i~~l~~g~ 214 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAF-K-DCTVLTIAHRLDTIID-SDRILVLDKGR 214 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEECCe
Confidence 999999999999999999999999974 3 6899999999999976 99999998654
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=290.09 Aligned_cols=197 Identities=26% Similarity=0.280 Sum_probs=162.6
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
++.|++ ....+++++|++.+| |+++|+|+||||||||+++|+|+++ ++|++. +..+. ...++|+
T Consensus 9 s~~~~~~~~~~l~~isl~I~~G-----e~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v 82 (275)
T cd03289 9 TAKYTEGGNAVLENISFSISPG-----QRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVI 82 (275)
T ss_pred EEEeCCCCCcceeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEE
Confidence 677752 234689999999988 7899999999999999999999997 789875 22211 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCc-----------CChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVN-----------LSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----------LSGGe~QRvaiA~aL~~~p~ 487 (605)
||+... |..|+++++... .. .....+.++++.+++....++.+.. |||||+|||+|||||+.+|+
T Consensus 83 ~q~~~l-f~~tv~~nl~~~--~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 83 PQKVFI-FSGTFRKNLDPY--GK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred CCCccc-chhhHHHHhhhc--cC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 998754 567999987421 11 2345667889999999888888876 99999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||||||++||+.++..+.+.|+++. .++|||+||||++++.. ||||++|+.+.. ...++|+++++.
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~-~dri~vl~~G~i--~~~g~~~~l~~~ 226 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAMLE-CQRFLVIEENKV--RQYDSIQKLLNE 226 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHh-CCEEEEecCCeE--eecCCHHHHhhC
Confidence 999999999999999999999999863 48999999999999875 999999986543 466899999884
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=288.41 Aligned_cols=204 Identities=25% Similarity=0.362 Sum_probs=147.0
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+.|++.||.. +|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 4 ~~l~~~~l~~--------~~~~~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~---------- 64 (257)
T PRK10619 4 NKLNVIDLHK--------RYGEH-EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVV---------- 64 (257)
T ss_pred ccEEEeeeEE--------EECCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE----------
Confidence 4577776544 55432 2345555 35799999999999999999999999999999998852
Q ss_pred hccchhhhh---------HH--HHHHHHHHHhhcccccccchh-hhhchhh----hh--cCchHHHHHHHHHHhhcCCch
Q 040300 147 FRGSELQNY---------FT--RILEDNLKAIIKPQYVDHIPK-AVQGNVG----QV--LDQKDERDMKADLCTDLDLNQ 208 (605)
Q Consensus 147 ~~g~~l~~~---------~~--~~~~~~~~~~~~~q~~~~~~~-~~~~~v~----~~--l~~~~~~~~~~~~l~~l~L~~ 208 (605)
.|..+... .. ....-.....+.+|.....+. .+..++. .. ......+.++.++++.+||.+
T Consensus 65 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 143 (257)
T PRK10619 65 -NGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDE 143 (257)
T ss_pred -CCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCh
Confidence 12111000 00 000000112333343222221 1111111 00 111234567889999999987
Q ss_pred h-hcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEE
Q 040300 209 V-IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFIC 287 (605)
Q Consensus 209 ~-~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~ 287 (605)
. .++++.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+.|+|||+||||++++..+||+|+
T Consensus 144 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~ 223 (257)
T PRK10619 144 RAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 223 (257)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 6 489999999999999999999999999999999999999999999999999998779999999999999999999999
Q ss_pred EEeC
Q 040300 288 CLYG 291 (605)
Q Consensus 288 vl~g 291 (605)
+|..
T Consensus 224 ~l~~ 227 (257)
T PRK10619 224 FLHQ 227 (257)
T ss_pred EEEC
Confidence 9964
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=289.02 Aligned_cols=199 Identities=26% Similarity=0.339 Sum_probs=143.8
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH----
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF---- 156 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~---- 156 (605)
+++++|+.. ..+++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++... |..+..+.
T Consensus 5 ~l~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~-----------g~~i~~~~~~~~ 72 (252)
T TIGR03005 5 DVTKRFGIL-TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE-----------GEQLYHMPGRNG 72 (252)
T ss_pred EEEEEeCCe-eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC-----------CEEccccccccc
Confidence 456677642 3455555 458999999999999999999999999999999988521 11110000
Q ss_pred -------HHHHHHHHHHhhcccccccchh-hhhchhhh------hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHH
Q 040300 157 -------TRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ------VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGEL 222 (605)
Q Consensus 157 -------~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~ 222 (605)
.......-..++.+|.....+. .+..++.. ..........+.++++.+|+.+.+++.+.+|||||+
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQ 152 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHH
Confidence 0000000011222232211111 11111110 011122345678899999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 223 QRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 223 QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||++||+||+.+|++|||||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|+.+
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 223 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKG 223 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999999999999875 899999999999999999999999653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=273.92 Aligned_cols=153 Identities=23% Similarity=0.346 Sum_probs=130.1
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEeecCcCC---C
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYKPQKIS---P 424 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~~q~~~---~ 424 (605)
.+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ...++|++|+.. .
T Consensus 15 ~l~~vs~~i~~G-----~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (182)
T cd03215 15 AVRDVSFEVRAG-----EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGL 89 (182)
T ss_pred eecceEEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcc
Confidence 578888888887 78999999999999999999999999999875 22211 235899999842 3
Q ss_pred CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040300 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRI 504 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~ 504 (605)
.+..|+++++..... |||||+|||+|||||+.+|++|||||||++||+.++.
T Consensus 90 ~~~~t~~e~l~~~~~----------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~ 141 (182)
T cd03215 90 VLDLSVAENIALSSL----------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKA 141 (182)
T ss_pred cCCCcHHHHHHHHhh----------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHH
Confidence 345688887632100 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 505 VAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 505 ~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
.+.++|+++.. .+.|+|++|||++++..+||++++|+++
T Consensus 142 ~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~v~~l~~G 180 (182)
T cd03215 142 EIYRLIRELAD-AGKAVLLISSELDELLGLCDRILVMYEG 180 (182)
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEecCC
Confidence 99999999854 4899999999999999999999999853
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=289.26 Aligned_cols=192 Identities=30% Similarity=0.435 Sum_probs=141.5
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+++++ .+++|++++|+|+||||||||+++|+|+++|+.|++.. .|..+.........
T Consensus 8 l~~~~~~~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~-----------~g~~~~~~~~~~~~ 75 (258)
T PRK13548 8 LSVRLGGR-TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL-----------NGRPLADWSPAELA 75 (258)
T ss_pred EEEEeCCe-eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE-----------CCEEcccCCHHHhh
Confidence 44566542 3455555 45799999999999999999999999999999999852 12111110000000
Q ss_pred HHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
...++.+|.....+. .++.+.+ .......++.++++.++|.+..++.+.+|||||+||++||+||+
T Consensus 76 --~~i~~~~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 76 --RRRAVLPQHSSLSFP---FTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLA 150 (258)
T ss_pred --hheEEEccCCcCCCC---CCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 011222222111111 1222111 11223456788999999999999999999999999999999999
Q ss_pred ------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 233 ------QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 233 ------~~p~vlllDEPts~LD~~~r~~~~~~i~~l~-~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+|++|||||||++||+.++..+.++|+++. +.+.|||++|||++++..+||+|++|..
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 216 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQ 216 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEEC
Confidence 5999999999999999999999999999998 5689999999999999999999999964
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=299.42 Aligned_cols=205 Identities=21% Similarity=0.301 Sum_probs=144.0
Q ss_pred eEEEecCCcccCCCceEEeCC---CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC----CCCceeeCCCCh
Q 040300 69 AIQIINLPKDLDKDTTHRYGP---NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK----PNLGRFNNPPDW 140 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~---~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~----p~~G~i~~~~~~ 140 (605)
.|++.||.+ +|+. ....+++++ .+.+||++||+|+||||||||+++|+|+++ |+.|++.
T Consensus 3 ~L~v~~l~~--------~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~----- 69 (330)
T PRK15093 3 LLDIRNLTI--------EFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR----- 69 (330)
T ss_pred eEEEeeeEE--------EEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEE-----
Confidence 567777655 4521 123456666 468999999999999999999999999997 4789874
Q ss_pred hhhhhhhccchhhhhHHHHHHHHH--HHhhcccccc--cchhh-hhchhhhh----------cCc-hHHHHHHHHHHhhc
Q 040300 141 QEILTYFRGSELQNYFTRILEDNL--KAIIKPQYVD--HIPKA-VQGNVGQV----------LDQ-KDERDMKADLCTDL 204 (605)
Q Consensus 141 ~~~~~~~~g~~l~~~~~~~~~~~~--~~~~~~q~~~--~~~~~-~~~~v~~~----------l~~-~~~~~~~~~~l~~l 204 (605)
|.|.++............ ...+.+|... ..|.. +...+.+. ... ...+.++.++++.+
T Consensus 70 ------~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 143 (330)
T PRK15093 70 ------FDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRV 143 (330)
T ss_pred ------ECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHC
Confidence 222221111000000000 0111122111 01100 01111110 001 12346788999999
Q ss_pred CCch---hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHH
Q 040300 205 DLNQ---VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLD 280 (605)
Q Consensus 205 ~L~~---~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~ 280 (605)
||.+ .+++++.+|||||+|||+||+||+.+|++|||||||++||+..+.++.++|+++.++ |.|||+||||++++.
T Consensus 144 gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~ 223 (330)
T PRK15093 144 GIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLS 223 (330)
T ss_pred CCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 9973 578999999999999999999999999999999999999999999999999999874 899999999999999
Q ss_pred hhcCEEEEEeCc
Q 040300 281 YLSDFICCLYGK 292 (605)
Q Consensus 281 ~~~D~i~vl~g~ 292 (605)
.+||+|++|+.+
T Consensus 224 ~~~dri~vm~~G 235 (330)
T PRK15093 224 QWADKINVLYCG 235 (330)
T ss_pred HhCCEEEEEECC
Confidence 999999999854
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=293.24 Aligned_cols=193 Identities=24% Similarity=0.316 Sum_probs=139.4
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH-HHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT-RIL 160 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~-~~~ 160 (605)
++++|+...-.|.+++ .+++||++||+|+||||||||+++|+|+++|+.|++.. .|..+..+.. ...
T Consensus 7 l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~~~ 75 (274)
T PRK13644 7 VSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV-----------SGIDTGDFSKLQGI 75 (274)
T ss_pred EEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-----------CCEECCccccHHHH
Confidence 4455632212455555 35799999999999999999999999999999998842 1211110000 000
Q ss_pred HHHHHHhhcccccc-cchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVD-HIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV 230 (605)
Q Consensus 161 ~~~~~~~~~~q~~~-~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a 230 (605)
.. ...+.+|... ... ..++.+. .......+++.++++.+||++..++++.+|||||+||++||+|
T Consensus 76 ~~--~i~~v~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 150 (274)
T PRK13644 76 RK--LVGIVFQNPETQFV---GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGI 150 (274)
T ss_pred Hh--heEEEEEChhhhcc---cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHH
Confidence 00 0111111110 000 0011111 1122334568889999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+.+|++|||||||++||+.++..+++.|+++.++|.|||++|||++++. .||++++|+.+
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G 211 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRG 211 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECC
Confidence 99999999999999999999999999999999877999999999999995 59999999643
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=316.67 Aligned_cols=198 Identities=20% Similarity=0.196 Sum_probs=159.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++... ....++|++|+.......
T Consensus 8 s~~~~~~-~il~~vsl~i~~G-----e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~--~~~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 8 TMQFGAK-PLFENISVKFGGG-----NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD--PNERLGKLRQDQFAFEEF 79 (530)
T ss_pred EEEeCCc-EeEeCCEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec--CCCEEEEEeccCCcCCCC
Confidence 6778653 4789999999888 7899999999999999999999999999997411 124699999987655567
Q ss_pred cHHHHHHhhhc-------------cC-----------------------CCCHHHHHHHHhhcCCchh-hccCcCcCChh
Q 040300 429 TVRHLLHQKIR-------------DS-----------------------YTHPQFVSDVMKPLLIEQL-MDQEVVNLSGG 471 (605)
Q Consensus 429 tv~~~~~~~~~-------------~~-----------------------~~~~~~~~~~l~~l~l~~~-~~~~~~~LSGG 471 (605)
|+.+++..... .. +.....+.++++.+++.+. .++++.+||||
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG 159 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPG 159 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHH
Confidence 88876542100 00 0112346678999999864 46789999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeec
Q 040300 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVA 551 (605)
Q Consensus 472 e~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~ 551 (605)
|||||+||+||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||||++++++... ...
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~-~~~ 234 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSVCTHMADLDYGELR-VYP 234 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhcceEEEEeCCEEE-Eec
Confidence 99999999999999999999999999999999999998864 4899999999999999999999999865432 245
Q ss_pred CChhhhhc
Q 040300 552 NAPQSLLT 559 (605)
Q Consensus 552 ~~p~~~~~ 559 (605)
++++++..
T Consensus 235 g~~~~~~~ 242 (530)
T PRK15064 235 GNYDEYMT 242 (530)
T ss_pred CCHHHHHH
Confidence 77776643
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=277.38 Aligned_cols=173 Identities=23% Similarity=0.241 Sum_probs=140.7
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC---CCeeeee--ccccC------cce
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK---PDSVEDS--DVEIP------EFN 414 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~---p~~G~i~--~~~~~------~~~ 414 (605)
++.|+.. ...+++++|++.+| |+++|+||||||||||+++|+|+++ |++|++. +.... ...
T Consensus 10 ~~~~~~~~~~~~il~~~s~~i~~G-----e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 84 (202)
T cd03233 10 SFTTGKGRSKIPILKDFSGVVKPG-----EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGE 84 (202)
T ss_pred EEEeccCCCCceeeeeEEEEECCC-----cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcce
Confidence 7777642 34688899988888 7899999999999999999999999 8899875 22211 235
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
++|++|+....+..||++++..... .. .++++.+|||||+|||+|||||+.+|++||||||
T Consensus 85 i~~~~q~~~~~~~~tv~~~l~~~~~--------~~-----------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEP 145 (202)
T cd03233 85 IIYVSEEDVHFPTLTVRETLDFALR--------CK-----------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNS 145 (202)
T ss_pred EEEEecccccCCCCcHHHHHhhhhh--------hc-----------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence 8999998665556799998743210 00 5778899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EecCHHHHHhhcCEEEEEeCCc
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFV-VEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiiv-vsHD~~~~~~~adrviv~~g~~ 545 (605)
|++||+.++..++++|+++.++.+.|+|+ ++|+.+++..+||++++|+++.
T Consensus 146 t~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~ 197 (202)
T cd03233 146 TRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGR 197 (202)
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCE
Confidence 99999999999999999986654666555 4566789999999999998654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=284.71 Aligned_cols=178 Identities=29% Similarity=0.476 Sum_probs=147.5
Q ss_pred ceEEEecCCcccCCCceEEeCCCc--eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNT--FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~--f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
..+++.||.+.|...-. ++... .++++++ .+++||++||||+|||||||+.|+|.|+++|+.|+|.
T Consensus 3 ~ll~v~~l~k~f~~~~~--~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~--------- 71 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG--FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL--------- 71 (268)
T ss_pred ceEEEeccEEEEecccc--cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEE---------
Confidence 36788888876643211 22221 3455555 3589999999999999999999999999999999984
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHH
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQ 223 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~Q 223 (605)
|.|.++... ......+++.++++.+|+. +.++|++++|||||+|
T Consensus 72 --f~g~~i~~~---------------------------------~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 72 --FEGKDITKL---------------------------------SKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred --EcCcchhhc---------------------------------chhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 555442211 0122356788999999997 5899999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|++|||||+.+|+++++|||+|.||+..+.++.++|.+|.++ |.|.++||||++++.++||+|.|||-
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~ 185 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYL 185 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEec
Confidence 999999999999999999999999999999999999999875 99999999999999999999999984
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=285.30 Aligned_cols=174 Identities=26% Similarity=0.379 Sum_probs=132.3
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh-h
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-A 179 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~ 179 (605)
.+||+++|+|+||||||||+++|+|+++|+.|++.. .|.++...... ..+.+|.....+. .
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~-------~~~v~q~~~l~~~~t 70 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL-----------EGKQITEPGPD-------RMVVFQNYSLLPWLT 70 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-----------CCEECCCCChh-------heEEecCcccCCCCC
Confidence 699999999999999999999999999999999852 12111110000 0111221111110 0
Q ss_pred hhchhhh-------hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 040300 180 VQGNVGQ-------VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252 (605)
Q Consensus 180 ~~~~v~~-------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r 252 (605)
+...+.. .......++++.++++.+||.+.+++.+.+|||||+||++||+||+.+|++|||||||++||+.++
T Consensus 71 v~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 71 VRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 0011100 011122345678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 253 LKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 253 ~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
..+.+.|+++.++ |+|||+||||++++..+||++++|..+
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G 191 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 9999999999764 899999999999999999999999643
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=317.99 Aligned_cols=195 Identities=27% Similarity=0.370 Sum_probs=157.7
Q ss_pred eeecC-CceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCc
Q 040300 349 RYKYP-TMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQ 427 (605)
Q Consensus 349 ~~~y~-~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~ 427 (605)
+++|+ + ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.. .....++|++|++.....
T Consensus 13 ~~~y~~~-~~il~~vs~~i~~G-----e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~--~~~~~i~~v~Q~~~~~~~ 84 (556)
T PRK11819 13 SKVVPPK-KQILKDISLSFFPG-----AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP--APGIKVGYLPQEPQLDPE 84 (556)
T ss_pred EEEeCCC-CeeeeCceEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe--cCCCEEEEEecCCCCCCC
Confidence 77786 4 34789999999988 689999999999999999999999999999741 123569999999765556
Q ss_pred CcHHHHHHhhhc----------------c-C-----------------------CCCHHHHHHHHhhcCCchhhccCcCc
Q 040300 428 STVRHLLHQKIR----------------D-S-----------------------YTHPQFVSDVMKPLLIEQLMDQEVVN 467 (605)
Q Consensus 428 ~tv~~~~~~~~~----------------~-~-----------------------~~~~~~~~~~l~~l~l~~~~~~~~~~ 467 (605)
.|+.+++..... . . +.....+.++++.+++.. .++++.+
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~ 163 (556)
T PRK11819 85 KTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTK 163 (556)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhh
Confidence 789887642110 0 0 001234567888999964 7899999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcce
Q 040300 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSV 547 (605)
Q Consensus 468 LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~ 547 (605)
|||||||||+||+||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++++.+...
T Consensus 164 LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999986 359999999999999999999999865432
Q ss_pred eeecCChhhh
Q 040300 548 DCVANAPQSL 557 (605)
Q Consensus 548 ~~~~~~p~~~ 557 (605)
...++++++
T Consensus 240 -~~~g~~~~~ 248 (556)
T PRK11819 240 -PWEGNYSSW 248 (556)
T ss_pred -EecCCHHHH
Confidence 244555543
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=289.50 Aligned_cols=203 Identities=23% Similarity=0.325 Sum_probs=141.9
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP-----NLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-----~~G~i~~~~~~~~ 142 (605)
+|++.|+ +++|+.. ..|.+++ .+.+||++||+|+||||||||+++|+|+++| +.|++..
T Consensus 12 ~l~~~~l--------~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~------ 76 (258)
T PRK14268 12 QIKVENL--------NLWYGEK-QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSI------ 76 (258)
T ss_pred eEEEeee--------EEEeCCe-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEE------
Confidence 4666655 4566532 2455555 3579999999999999999999999999985 7898742
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhh---hh--cCchHHHHHHHHHHhhcCC----chhhccc
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVG---QV--LDQKDERDMKADLCTDLDL----NQVIDRN 213 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L----~~~~dr~ 213 (605)
.|..+...........-..++.+|.....+..+..++. .. +.....+.++.++++.+++ .+.++++
T Consensus 77 -----~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 151 (258)
T PRK14268 77 -----EGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSP 151 (258)
T ss_pred -----CCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCC
Confidence 22211100000000000112222221111111111111 00 1112234567889999988 3567899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|||||+|||+||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+++
T Consensus 152 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G 229 (258)
T PRK14268 152 ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMG 229 (258)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999999965 799999999999999999999999753
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=283.98 Aligned_cols=188 Identities=26% Similarity=0.315 Sum_probs=139.2
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhc-cchhhhhHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFR-GSELQNYFTRIL 160 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~-g~~l~~~~~~~~ 160 (605)
++.+|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..... .. ..+. +..++.. ..+
T Consensus 28 ~~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~--~~-~~~~~~~~~~~~--~tv 101 (224)
T cd03220 28 RKGEVGEF-WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR--VS-SLLGLGGGFNPE--LTG 101 (224)
T ss_pred hhhhcCCe-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE--Ec-hhhcccccCCCC--CcH
Confidence 34466654 2456665 45899999999999999999999999999999999852110 00 0000 0000000 000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
.+++.... ... .......++++.++++.++|.+.+++.+.+|||||+||++||+||+.+|+++||
T Consensus 102 ~enl~~~~--------------~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 166 (224)
T cd03220 102 RENIYLNG--------------RLL-GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLI 166 (224)
T ss_pred HHHHHHHH--------------HHc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11110000 000 011122345677889999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||||++||+.++..+.++|+++.+++.|||+||||++++..+||++++|..
T Consensus 167 DEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 217 (224)
T cd03220 167 DEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEK 217 (224)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999977789999999999999999999999964
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=304.34 Aligned_cols=193 Identities=23% Similarity=0.308 Sum_probs=142.5
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH--H
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT--R 158 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~--~ 158 (605)
+++++|+.. .+ +++ .+.+||+++|+|+||||||||+++|+|+++|+.|++.. .|..+..... .
T Consensus 5 ~l~k~~~~~--~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~-----------~g~~~~~~~~~~~ 70 (352)
T PRK11144 5 NFKQQLGDL--CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVL-----------NGRVLFDAEKGIC 70 (352)
T ss_pred EEEEEeCCE--EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEEccccccccc
Confidence 456677642 12 333 34799999999999999999999999999999999852 1211110000 0
Q ss_pred HHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 159 ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
.........+.+|.....|. .++.+.+. .....+++.++++.+||.+.+++.+.+|||||+|||+|||||+.+|
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~---~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p 147 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPH---YKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred cchhhCCEEEEcCCcccCCC---CcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 00000011222333222221 12222221 1123456889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++|||||||++||+..+..+.+.|+++.++ +.|||+||||++++..+||++++|..
T Consensus 148 ~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~ 204 (352)
T PRK11144 148 ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQ 204 (352)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999875 89999999999999999999999964
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=295.90 Aligned_cols=203 Identities=19% Similarity=0.283 Sum_probs=142.6
Q ss_pred eEEEecCCcccCCCceEEeCCCc----eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNT----FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI 143 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~----f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~ 143 (605)
.|++.|| +++|+... ..+++++ .+++||++||+|+||||||||+|+|+|+++|+.|++...
T Consensus 6 ~l~i~nl--------~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~------ 71 (289)
T PRK13645 6 DIILDNV--------SYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVG------ 71 (289)
T ss_pred eEEEEEE--------EEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC------
Confidence 4566665 44565321 2456665 458999999999999999999999999999999987421
Q ss_pred hhhhccchhhh----h-HHHHHHHHHHHhhcccccc--cchhhhhchhh--hh---cCchHHHHHHHHHHhhcCCc-hhh
Q 040300 144 LTYFRGSELQN----Y-FTRILEDNLKAIIKPQYVD--HIPKAVQGNVG--QV---LDQKDERDMKADLCTDLDLN-QVI 210 (605)
Q Consensus 144 ~~~~~g~~l~~----~-~~~~~~~~~~~~~~~q~~~--~~~~~~~~~v~--~~---l~~~~~~~~~~~~l~~l~L~-~~~ 210 (605)
|.++.. . ...... -..++.+|... ..+..+..++. .. ........++.++++.++|. ++.
T Consensus 72 -----g~~i~~~~~~~~~~~~~~--~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~ 144 (289)
T PRK13645 72 -----DYAIPANLKKIKEVKRLR--KEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYV 144 (289)
T ss_pred -----CEEccccccccccHHHHh--ccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh
Confidence 111100 0 000000 00111111100 00000000000 00 01122235677899999994 789
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEE
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
++++.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ ++|||+||||++++..+||++++|
T Consensus 145 ~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l 224 (289)
T PRK13645 145 KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVM 224 (289)
T ss_pred cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999764 899999999999999999999999
Q ss_pred eCc
Q 040300 290 YGK 292 (605)
Q Consensus 290 ~g~ 292 (605)
+++
T Consensus 225 ~~G 227 (289)
T PRK13645 225 HEG 227 (289)
T ss_pred ECC
Confidence 753
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=286.35 Aligned_cols=197 Identities=23% Similarity=0.328 Sum_probs=140.4
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCC--CCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKL--KPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l--~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
+++++|+.. ..|++++ .+++||+++|+|+||||||||+|+|+|++ +|+.|++... |..+..+...
T Consensus 5 ~l~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~-----------g~~~~~~~~~ 72 (243)
T TIGR01978 5 DLHVSVEDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFK-----------GQDLLELEPD 72 (243)
T ss_pred eEEEEECCE-EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEEC-----------CEecCCCCHH
Confidence 456677642 4566666 46899999999999999999999999995 7999988521 1111110000
Q ss_pred HHHHHHHHhhcccccccchhh-hhchhh---hh---------cCchHHHHHHHHHHhhcCCc-hhhcccCC-CCChHHHH
Q 040300 159 ILEDNLKAIIKPQYVDHIPKA-VQGNVG---QV---------LDQKDERDMKADLCTDLDLN-QVIDRNVG-DLSGGELQ 223 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~~-~~~~v~---~~---------l~~~~~~~~~~~~l~~l~L~-~~~dr~v~-~LSGGe~Q 223 (605)
.. .....++.+|.....+.. +...+. .. .......+++.++++.++|. ...++.+. +|||||+|
T Consensus 73 ~~-~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 73 ER-ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred Hh-hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHH
Confidence 00 000011112221111110 000000 00 01112245678899999997 57888887 59999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhh-cCEEEEEeC
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYL-SDFICCLYG 291 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~-~D~i~vl~g 291 (605)
|++||+||+.+|++|||||||++||+.++..+.++|+++.++|.|||+||||++++..+ ||++++|++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~ 220 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLD 220 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeC
Confidence 99999999999999999999999999999999999999987789999999999999998 899999974
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=285.84 Aligned_cols=202 Identities=21% Similarity=0.290 Sum_probs=142.9
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|+ +++|+.. ..+++++ .+++||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 5 ~l~~~~l--------~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~----------- 64 (237)
T PRK11614 5 MLSFDKV--------SAHYGKI-QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF----------- 64 (237)
T ss_pred EEEEEeE--------EEeeCCc-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE-----------
Confidence 4666665 4456532 3455555 45899999999999999999999999999999998752
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh--h-cCchHHHHHHHHHHhhc-CCchhhcccCCCCChHHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ--V-LDQKDERDMKADLCTDL-DLNQVIDRNVGDLSGGEL 222 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~--~-l~~~~~~~~~~~~l~~l-~L~~~~dr~v~~LSGGe~ 222 (605)
.|..+........ ......+.+|.....+. .+..++.. . .........+.++++.+ ++.+..++++.+|||||+
T Consensus 65 ~g~~~~~~~~~~~-~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~ 143 (237)
T PRK11614 65 DGKDITDWQTAKI-MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQ 143 (237)
T ss_pred CCEecCCCCHHHH-HHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHH
Confidence 2221111000000 00001122222111111 11111100 0 01112234566778888 588888899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 223 QRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 223 QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||++||+||+.+|++|||||||++||+..+..+.++|+++.++|.|||++|||++++..+||++++|+.
T Consensus 144 qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (237)
T PRK11614 144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLEN 212 (237)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeC
Confidence 999999999999999999999999999999999999999987799999999999999999999999964
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=281.77 Aligned_cols=177 Identities=25% Similarity=0.353 Sum_probs=133.6
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh-
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK- 178 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~- 178 (605)
+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|.++.... . . ....++.+|.....+.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~-~-~--~~~i~~v~q~~~~~~~~ 85 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV-----------NDQSHTGLA-P-Y--QRPVSMLFQENNLFAHL 85 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-----------CCEEcccCC-h-h--ccceEEEeccCccCCCC
Confidence 3699999999999999999999999999999998852 121111100 0 0 0011122222111111
Q ss_pred hhhchhhhh----c-CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 040300 179 AVQGNVGQV----L-DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRL 253 (605)
Q Consensus 179 ~~~~~v~~~----l-~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~ 253 (605)
.+..++... . .....+.++.++++.++|++..++.+.+|||||+||++||+||+.+|+++||||||++||+.++.
T Consensus 86 t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~ 165 (213)
T TIGR01277 86 TVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLRE 165 (213)
T ss_pred cHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 111111100 0 01123456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 254 KAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 254 ~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+.++|+++.++ +.|||+|||+++++..+||++++|..
T Consensus 166 ~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~ 204 (213)
T TIGR01277 166 EMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQ 204 (213)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEEC
Confidence 999999999764 89999999999999999999999964
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=289.15 Aligned_cols=202 Identities=25% Similarity=0.305 Sum_probs=141.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-----PNLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~ 142 (605)
.|++.|+ +++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|++. |+.|++..
T Consensus 6 ~l~~~~l--------~~~~~~~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~------ 70 (253)
T PRK14242 6 KMEARGL--------SFFYGDF-QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL------ 70 (253)
T ss_pred EEEEeee--------EEEECCe-eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE------
Confidence 4666665 4566542 3455555 457999999999999999999999999864 58898742
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhh---h--c-CchHHHHHHHHHHhhcCCc----hhhcc
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQ---V--L-DQKDERDMKADLCTDLDLN----QVIDR 212 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~---~--l-~~~~~~~~~~~~l~~l~L~----~~~dr 212 (605)
.|.++.........-....++.+|.....+..+..++.. . . ......+++.++++.+++. ..+++
T Consensus 71 -----~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (253)
T PRK14242 71 -----DGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHE 145 (253)
T ss_pred -----CCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhC
Confidence 222111000000000001122233221111111111110 0 0 1112345678889999984 35789
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++.+|||||+|||+||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+.
T Consensus 146 ~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14242 146 SALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVTAFFYM 223 (253)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999965 79999999999999999999999964
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=279.46 Aligned_cols=189 Identities=18% Similarity=0.225 Sum_probs=139.2
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. ..+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+...... ..
T Consensus 7 l~~~~~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~-----------~g~~~~~~~~~-~~ 73 (204)
T PRK13538 7 LACERDER-ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW-----------QGEPIRRQRDE-YH 73 (204)
T ss_pred EEEEECCE-EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEEcccchHH-hh
Confidence 44556542 3455555 45899999999999999999999999999999999852 22221110000 00
Q ss_pred HHHHHhhcccccccchhhhhchhhhhc------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVL------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
. ...+.+|.....+. .++.+.+ .......+++++++.+||.+..++++.+|||||+||++||+||+++|
T Consensus 74 ~--~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 74 Q--DLLYLGHQPGIKTE---LTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred h--heEEeCCccccCcC---CcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 0 11111221111111 0121111 01123456788999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
+++||||||++||+.++..+.++|+++.+.+.|||+||||+++++...+|++++
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999999777899999999999999988888776
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=304.88 Aligned_cols=199 Identities=24% Similarity=0.279 Sum_probs=148.0
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccc----hhhhhH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGS----ELQNYF 156 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~----~l~~~~ 156 (605)
++.++||.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++... |. ++....
T Consensus 29 ~~~~~~g~~-~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~id-----------G~~~~~~i~~~~ 96 (382)
T TIGR03415 29 EILDETGLV-VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVK-----------DGDGSIDVANCD 96 (382)
T ss_pred HHHHhhCCE-EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC-----------CEecccccccCC
Confidence 345667654 3466666 468999999999999999999999999999999998522 21 110000
Q ss_pred HHHHHH--HHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHH
Q 040300 157 TRILED--NLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIA 228 (605)
Q Consensus 157 ~~~~~~--~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA 228 (605)
.....+ .....+.+|.....|. .+..++... +.....+.++.++++.+||.+..++++.+|||||+|||+||
T Consensus 97 ~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LA 176 (382)
T TIGR03415 97 AATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLA 176 (382)
T ss_pred HHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 000000 0112333343333331 122222110 11223356788999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||+.+|++|||||||++||+..+.++.+.|.++.++ ++|||+||||++++..+||+|++|+++
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G 241 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGG 241 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999875 899999999999999999999999753
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=286.50 Aligned_cols=200 Identities=21% Similarity=0.299 Sum_probs=158.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-----Ceeeee--cccc-----------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-----DSVEDS--DVEI----------- 410 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-----~~G~i~--~~~~----------- 410 (605)
++.|++. ..+++++|++.+| |+++|+|+||||||||+++|+|+++| ++|++. +...
T Consensus 23 ~~~~~~~-~vl~~vs~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~ 96 (265)
T PRK14252 23 NFYYGGY-QALKNINMMVHEK-----QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIE 96 (265)
T ss_pred EEEECCe-eeeeeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHH
Confidence 7778753 4789999999888 78999999999999999999999985 688874 1111
Q ss_pred CcceeEeecCcCCCCCcCcHHHHHHhhhc-cCCC----CHHHHHHHHhhcCC----chhhccCcCcCChhHHHHHHHHHH
Q 040300 411 PEFNVSYKPQKISPKFQSTVRHLLHQKIR-DSYT----HPQFVSDVMKPLLI----EQLMDQEVVNLSGGELQRVALCLC 481 (605)
Q Consensus 411 ~~~~i~y~~q~~~~~~~~tv~~~~~~~~~-~~~~----~~~~~~~~l~~l~l----~~~~~~~~~~LSGGe~QRvaiA~a 481 (605)
....++|++|+.... ..|+.+++..... .... ....+.++++.+++ .+..++.+.+|||||+|||+||||
T Consensus 97 ~~~~i~~~~q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 175 (265)
T PRK14252 97 VRMRISMVFQKPNPF-PKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARA 175 (265)
T ss_pred HhccEEEEccCCcCC-cchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHH
Confidence 023589999986544 4599887753211 1111 12345667777776 356788999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|+.+|++|||||||++||+.++..+.++|+++. + +.|||+||||++++..+|||+++++++.. ...++++++..
T Consensus 176 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-~~tiiivth~~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~ 249 (265)
T PRK14252 176 LATDPEILLFDEPTSALDPIATASIEELISDLK-N-KVTILIVTHNMQQAARVSDYTAYMYMGEL--IEFGATDTIFI 249 (265)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-h-CCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHh
Confidence 999999999999999999999999999999984 3 68999999999999999999999986543 34577777654
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=284.45 Aligned_cols=201 Identities=20% Similarity=0.304 Sum_probs=159.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+.. |++|++. +..+. .
T Consensus 10 ~~~~~~-~~~l~~~s~~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14266 10 NTYFDD-AHILKNVNLDIPKN-----SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELR 83 (250)
T ss_pred EEEeCC-eEEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHh
Confidence 667765 34689999998888 7899999999999999999999874 3889875 22211 2
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCC----HHHHHHHHhhcCCc----hhhccCcCcCChhHHHHHHHHHHHc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTH----PQFVSDVMKPLLIE----QLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~----~~~~~~~l~~l~l~----~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
..++|+||+... +..|+.+++...... .... ...+.++++.+++. ...++++.+|||||+|||+|||||+
T Consensus 84 ~~i~~~~q~~~~-~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 162 (250)
T PRK14266 84 KKVGMVFQKPNP-FPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162 (250)
T ss_pred hheEEEecCCcc-CcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 359999998654 345898877532111 1111 23456778888873 4578999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|++|||||||++||+.++..+.++|+++. + +.|||+||||++++..+||++++++++.. ...+++.++...
T Consensus 163 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i--~~~g~~~~~~~~ 235 (250)
T PRK14266 163 VSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGEI--IESGLTDQIFIN 235 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCeE--EEeCCHHHHHhC
Confidence 9999999999999999999999999999984 3 78999999999999999999999986543 345777777543
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=297.04 Aligned_cols=208 Identities=24% Similarity=0.351 Sum_probs=145.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC---CceeeCCCChhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN---LGRFNNPPDWQEIL 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~ 144 (605)
.|+|.||.+.+... +...-.+++++ .+.+||++||+|+||||||||+++|+|+++|+ .|+|.
T Consensus 12 ~L~i~~l~~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~--------- 77 (330)
T PRK09473 12 LLDVKDLRVTFSTP-----DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT--------- 77 (330)
T ss_pred eEEEeCeEEEEecC-----CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEE---------
Confidence 57777776544210 01112345555 35799999999999999999999999999996 89874
Q ss_pred hhhccchhhhhHHHHHHHHH--HHhhccccc--ccchhh-hhchhhhh------cCchHHHHHHHHHHhhcCCch---hh
Q 040300 145 TYFRGSELQNYFTRILEDNL--KAIIKPQYV--DHIPKA-VQGNVGQV------LDQKDERDMKADLCTDLDLNQ---VI 210 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~--~~~~~~q~~--~~~~~~-~~~~v~~~------l~~~~~~~~~~~~l~~l~L~~---~~ 210 (605)
|.|.++..+......... ...+.+|.. ...|.. +...+.+. ....+...++.++++.++|.+ .+
T Consensus 78 --~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~ 155 (330)
T PRK09473 78 --FNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRM 155 (330)
T ss_pred --ECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHh
Confidence 223222211100000000 011122221 001111 01111111 112234567888999999964 46
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEE
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
++++.+|||||+|||+||+||+.+|++||+||||++||+..+..++++|+++.++ |.|+|+||||++++.++||+|++|
T Consensus 156 ~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm 235 (330)
T PRK09473 156 KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM 235 (330)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 8899999999999999999999999999999999999999999999999999875 899999999999999999999999
Q ss_pred eCc
Q 040300 290 YGK 292 (605)
Q Consensus 290 ~g~ 292 (605)
+.+
T Consensus 236 ~~G 238 (330)
T PRK09473 236 YAG 238 (330)
T ss_pred ECC
Confidence 854
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=264.26 Aligned_cols=202 Identities=25% Similarity=0.390 Sum_probs=151.9
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC----------
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP---------- 137 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~---------- 137 (605)
||.+.||- ++||... .|.+++ .-+.|+++.|||.+||||||+|++|.=+.+|+.|.|.-.
T Consensus 6 ~l~v~dlH--------K~~G~~e-VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 6 ALEVEDLH--------KRYGEHE-VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ceehhHHH--------hhcccch-hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCC
Confidence 67777654 4788763 466776 458999999999999999999999999999999987411
Q ss_pred ------CChhhhhhhhc---cchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCch
Q 040300 138 ------PDWQEILTYFR---GSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQ 208 (605)
Q Consensus 138 ------~~~~~~~~~~~---g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~ 208 (605)
.++..+ ..++ |..+|++.- ...+... +++-..|..+. -..+.+..++++.+|.++||.+
T Consensus 77 ~G~l~~ad~~q~-~r~Rs~L~mVFQ~FNL---WsHmtvL---eNViEaPvhVL-----g~~k~ea~e~Ae~~L~kVGi~e 144 (256)
T COG4598 77 DGQLKPADKRQL-QRLRTRLGMVFQHFNL---WSHMTVL---ENVIEAPVHVL-----GVSKAEAIERAEKYLAKVGIAE 144 (256)
T ss_pred CCCeeeCCHHHH-HHHHHHhhHhhhhcch---hHHHHHH---HHHHhcchHhh-----cCCHHHHHHHHHHHHHHhCchh
Confidence 112111 1111 122222110 0000000 00101111110 0234556788999999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
..+.++..|||||+||++|||||+.+|++++||||||.|||+-.-+++++|++|+++|+|+++|||.+.++..++.+|+.
T Consensus 145 k~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~f 224 (256)
T COG4598 145 KADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIF 224 (256)
T ss_pred hhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeC
Q 040300 289 LYG 291 (605)
Q Consensus 289 l~g 291 (605)
|+.
T Consensus 225 Lh~ 227 (256)
T COG4598 225 LHQ 227 (256)
T ss_pred eec
Confidence 963
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=275.12 Aligned_cols=166 Identities=25% Similarity=0.279 Sum_probs=138.1
Q ss_pred eeecCC-----ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeee--cccc----Cccee
Q 040300 349 RYKYPT-----MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDS--DVEI----PEFNV 415 (605)
Q Consensus 349 ~~~y~~-----~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~--~~~~----~~~~i 415 (605)
++.|++ ....+++++|++.+| |+++|+||||||||||+++|+|++ +|++|++. +... ....+
T Consensus 10 s~~~~~~~~~~~~~~l~~~~~~i~~G-----e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i 84 (194)
T cd03213 10 TVTVKSSPSKSGKQLLKNVSGKAKPG-----ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKII 84 (194)
T ss_pred EEEEecCCCcccccceecceEEEcCC-----cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheE
Confidence 667764 134788999998888 789999999999999999999999 99999875 2222 12468
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
+|++|+.......|+.+++..... + .+|||||+|||+|||||+.+|++|||||||
T Consensus 85 ~~~~q~~~~~~~~t~~~~i~~~~~---------------~----------~~LS~G~~qrv~laral~~~p~illlDEP~ 139 (194)
T cd03213 85 GYVPQDDILHPTLTVRETLMFAAK---------------L----------RGLSGGERKRVSIALELVSNPSLLFLDEPT 139 (194)
T ss_pred EEccCcccCCCCCcHHHHHHHHHH---------------h----------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 999998765555788887632100 0 189999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH-HHHhhcCEEEEEeCCc
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVYEGQP 545 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~-~~~~~adrviv~~g~~ 545 (605)
++||+.++..+.++|+++.. .+.|+|++|||++ ++..+|||+++|+++.
T Consensus 140 ~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 140 SGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 99999999999999999854 4899999999996 7888999999998654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=269.27 Aligned_cols=195 Identities=31% Similarity=0.446 Sum_probs=143.8
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++..+.. -+++++ ..++||+++|+||||||||||||.|+|.+.|+.|++.. .|..+..+....+.
T Consensus 7 ls~~~~Gr~-ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~-----------~g~~l~~~~~~~lA 74 (259)
T COG4559 7 LSYSLAGRR-LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL-----------NGVPLNSWPPEELA 74 (259)
T ss_pred eEEEeecce-eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEee-----------CCcChhhCCHHHHH
Confidence 444444332 245555 35899999999999999999999999999999999852 22222222111111
Q ss_pred HHHHHhhccccccc-chhhhhchhhh-hc------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHcc
Q 040300 162 DNLKAIIKPQYVDH-IPKAVQGNVGQ-VL------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQ 233 (605)
Q Consensus 162 ~~~~~~~~~q~~~~-~~~~~~~~v~~-~l------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~ 233 (605)
. ..+..||+... +|..+...|.- .. +..++.+.+++++...++.++..|...+|||||+|||.+||+|++
T Consensus 75 ~--~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 75 R--HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred H--HhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHH
Confidence 1 12233554321 22222211110 00 111344568889999999999999999999999999999999986
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 234 ------NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 234 ------~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++++|+||||||.||+..+..++++.++|+++|..|+.|=|||+....+||+|++|..
T Consensus 153 l~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~ 216 (259)
T COG4559 153 LWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQ 216 (259)
T ss_pred ccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeC
Confidence 3358999999999999999999999999999999999999999999999999999953
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=292.36 Aligned_cols=200 Identities=21% Similarity=0.332 Sum_probs=158.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-----CCeeeee--ccccC---------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-----PDSVEDS--DVEIP---------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-----p~~G~i~--~~~~~---------~ 412 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+++ |++|++. +..+. .
T Consensus 52 ~~~~~~-~~iL~~is~~i~~G-----e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~ 125 (305)
T PRK14264 52 DVYYGD-DHALKGVSMDIPEK-----SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELR 125 (305)
T ss_pred EEEeCC-eeeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 777875 34688999998887 7899999999999999999999986 6899875 22111 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc-------------CCC----CHHHHHHHHhhcCCc----hhhccCcCcCChh
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD-------------SYT----HPQFVSDVMKPLLIE----QLMDQEVVNLSGG 471 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~-------------~~~----~~~~~~~~l~~l~l~----~~~~~~~~~LSGG 471 (605)
..++|++|+... +..|+++++...... ... ....+.++++.+++. ...++++.+||||
T Consensus 126 ~~i~~v~q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 204 (305)
T PRK14264 126 KRVGMVFQSPNP-FPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGG 204 (305)
T ss_pred hceEEEccCCcc-ccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHH
Confidence 359999998653 446999887532110 000 123466788888874 5678899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEE-EEeCCcceeee
Q 040300 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI-VYEGQPSVDCV 550 (605)
Q Consensus 472 e~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrvi-v~~g~~~~~~~ 550 (605)
|+|||+|||||+++|+||||||||+|||+.++..+.++|+++.+ +.|||+||||++++..+|||++ +++++.. ..
T Consensus 205 q~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~i~~~l~~G~i--~~ 280 (305)
T PRK14264 205 QQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISDQTAVFLTGGEL--VE 280 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCEEEEEecCCEE--EE
Confidence 99999999999999999999999999999999999999999854 4899999999999999999975 5675433 34
Q ss_pred cCChhhhhc
Q 040300 551 ANAPQSLLT 559 (605)
Q Consensus 551 ~~~p~~~~~ 559 (605)
.+++++++.
T Consensus 281 ~g~~~~~~~ 289 (305)
T PRK14264 281 YDDTDKIFE 289 (305)
T ss_pred eCCHHHHHh
Confidence 577777654
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=281.59 Aligned_cols=199 Identities=24% Similarity=0.328 Sum_probs=141.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||.+ +|+.. ..+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 7 ~i~~~~l~~--------~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~----------- 66 (225)
T PRK10247 7 LLQLQNVGY--------LAGDA-KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF----------- 66 (225)
T ss_pred eEEEeccEE--------eeCCc-eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEE-----------
Confidence 466666554 55432 2455555 35799999999999999999999999999999998852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhh---hhcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVG---QVLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQ 223 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~---~~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~Q 223 (605)
.|..+..+...... ...++.+|.....+..+..++. ..........++.++++.+++. ...++++.+|||||+|
T Consensus 67 ~g~~~~~~~~~~~~--~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 144 (225)
T PRK10247 67 EGEDISTLKPEIYR--QQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQ 144 (225)
T ss_pred CCEEcCcCCHHHHH--hccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHH
Confidence 12111110000000 0111222221111111111110 0001112345677899999996 5889999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
|++||+||+.+|++|||||||++||+.++..+.+.|+++.++ +.|||++|||++++. .||++++|.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~ 211 (225)
T PRK10247 145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQ 211 (225)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence 999999999999999999999999999999999999999764 899999999999997 599999995
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=281.70 Aligned_cols=194 Identities=20% Similarity=0.210 Sum_probs=142.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|.+.||.+ +|+.. ..+.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++...
T Consensus 11 ~l~~~~l~~--------~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~---------- 71 (214)
T PRK13543 11 LLAAHALAF--------SRNEE-PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID---------- 71 (214)
T ss_pred eEEEeeEEE--------ecCCc-eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEEC----------
Confidence 466666544 45432 2344444 347999999999999999999999999999999998522
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc------CchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
|..+.... ... ...+.+|.....+.. ++.+.+ ......+.+.++++.++|.+.+++.+.+|||||
T Consensus 72 -g~~i~~~~---~~~--~i~~~~q~~~~~~~~---t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 142 (214)
T PRK13543 72 -GKTATRGD---RSR--FMAYLGHLPGLKADL---STLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQ 142 (214)
T ss_pred -CEEccchh---hhh--ceEEeecCcccccCC---cHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHH
Confidence 21111000 000 011112211111100 111111 111233456788999999988999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+||++||+|++.+|++|||||||++||+.++..+.++|+++.+++.|||++|||++++..+||+++++.
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEe
Confidence 999999999999999999999999999999999999999998778999999999999999999999985
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=279.13 Aligned_cols=190 Identities=23% Similarity=0.246 Sum_probs=141.2
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+..... ..
T Consensus 5 ~l~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~-~~ 71 (201)
T cd03231 5 ELTCERDGR-ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLL-----------NGGPLDFQRD-SI 71 (201)
T ss_pred EEEEEeCCc-eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEecccccH-Hh
Confidence 355566543 3455665 45799999999999999999999999999999999852 1211110000 00
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhc---CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVL---DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEI 237 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l---~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~v 237 (605)
.. ..++.+|.....+ ..++.+.+ ......++++++++.+++.+..++++.+|||||+||++||+||+.+|++
T Consensus 72 ~~--~i~~~~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 72 AR--GLLYLGHAPGIKT---TLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred hh--heEEeccccccCC---CcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 00 1122222211111 11222221 1111345678899999999989999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 238 YMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 238 lllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
+||||||++||+..+..+.+.|+++.++|.|+|+||||...+...+++++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999998777899999999999999999999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=281.08 Aligned_cols=189 Identities=24% Similarity=0.336 Sum_probs=136.3
Q ss_pred eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC--CChhhhhhhhccchhhhhHHHHHHH--HHHH
Q 040300 92 FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP--PDWQEILTYFRGSELQNYFTRILED--NLKA 166 (605)
Q Consensus 92 f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~--~~~~~~~~~~~g~~l~~~~~~~~~~--~~~~ 166 (605)
..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++... ..+. ++..+....... ....
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~---------~~~~~~~~~~~~~~~~~i 92 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWV---------DLAQASPREVLEVRRKTI 92 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCcc---------chhhcCHHHHHHHHhcce
Confidence 4566666 468999999999999999999999999999999998531 1000 111000000000 0011
Q ss_pred hhcccccccchhh-hhchhhhh-----cCchHHHHHHHHHHhhcCCch-hhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 167 IIKPQYVDHIPKA-VQGNVGQV-----LDQKDERDMKADLCTDLDLNQ-VIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 167 ~~~~q~~~~~~~~-~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~-~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
++.+|.....+.. +...+... .......+++.++++.++|.+ ..++++.+|||||+||++||+||+.+|++||
T Consensus 93 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 172 (224)
T TIGR02324 93 GYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILL 172 (224)
T ss_pred EEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2223322211110 00111100 111223456788999999976 5689999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
|||||++||+.++..+.++|+++.++|.|||+||||++++..+||+++.+
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 173 LDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999777899999999999999999999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=280.75 Aligned_cols=195 Identities=25% Similarity=0.372 Sum_probs=138.9
Q ss_pred EEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 70 IQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 70 i~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
|++.||. ++|+.. ...+.+++ .+.+|++++|+|+||||||||+++|+|+++|+.|++. +
T Consensus 3 l~~~~l~--------~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~-----------~ 63 (220)
T cd03245 3 IEFRNVS--------FSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL-----------L 63 (220)
T ss_pred EEEEEEE--------EEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEE-----------E
Confidence 5566654 455431 22344554 3579999999999999999999999999999999885 2
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhhcccC----------
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVIDRNV---------- 214 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~dr~v---------- 214 (605)
.|..+......... -...+.+|.....+ .++.+.+. .......+.++++.+++.+.+++.+
T Consensus 64 ~g~~~~~~~~~~~~--~~i~~~~q~~~~~~----~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 137 (220)
T cd03245 64 DGTDIRQLDPADLR--RNIGYVPQDVTLFY----GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGER 137 (220)
T ss_pred CCEEhHHCCHHHHH--hhEEEeCCCCcccc----chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCC
Confidence 23222211000000 01122233221111 12332221 1111335667888889988777754
Q ss_pred -CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 215 -GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 215 -~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+. .|||+||||++++ .+||++++|..
T Consensus 138 ~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~-~~~d~v~~l~~ 213 (220)
T cd03245 138 GRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLL-DLVDRIIVMDS 213 (220)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHH-HhCCEEEEEeC
Confidence 699999999999999999999999999999999999999999999999764 8999999999987 69999999964
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=285.72 Aligned_cols=192 Identities=24% Similarity=0.325 Sum_probs=139.5
Q ss_pred EEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHH
Q 040300 85 HRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDN 163 (605)
Q Consensus 85 ~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 163 (605)
++|+.. ..|++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++... |......... ...
T Consensus 29 ~~~~~~-~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~-----------g~~~~~~~~~-~~~- 94 (236)
T cd03267 29 RKYREV-EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA-----------GLVPWKRRKK-FLR- 94 (236)
T ss_pred cccCCe-eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC-----------CEEccccchh-hcc-
Confidence 455554 3566776 468999999999999999999999999999999998521 1111000000 000
Q ss_pred HHHhhcc-cccccchh-hhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC
Q 040300 164 LKAIIKP-QYVDHIPK-AVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE 236 (605)
Q Consensus 164 ~~~~~~~-q~~~~~~~-~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~ 236 (605)
...+.+ |.....+. .+...+. .. ........++.++++.++|.+.+++++.+|||||+||++||+||+.+|+
T Consensus 95 -~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 173 (236)
T cd03267 95 -RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPE 173 (236)
T ss_pred -cEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 011111 10000000 0000110 00 1112234567789999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 237 IYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 237 vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+|||||||++||+..+..+.++|+++.++ +.|||+||||++++..+||++++|+.
T Consensus 174 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 229 (236)
T cd03267 174 ILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDK 229 (236)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999764 89999999999999999999999964
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=290.76 Aligned_cols=186 Identities=21% Similarity=0.242 Sum_probs=136.0
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhccc
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQ 171 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q 171 (605)
.+.+++ .+++||+++|+|+||||||||+++|+|+++|+.|++.. .|.++........ ....++.+|
T Consensus 28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~~--~~~i~~v~q 94 (267)
T PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLI-----------DDHPLHFGDYSYR--SQRIRMIFQ 94 (267)
T ss_pred eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEE-----------CCEECCCCchhhH--hccEEEEec
Confidence 455666 46899999999999999999999999999999999852 1111110000000 001112222
Q ss_pred ccc--cchh-hhhchh----hh--hcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 040300 172 YVD--HIPK-AVQGNV----GQ--VLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFD 241 (605)
Q Consensus 172 ~~~--~~~~-~~~~~v----~~--~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllD 241 (605)
... ..+. .+...+ .. .+......+.+.++++.+||. ...++.+.+|||||+||++||+||+.+|++||||
T Consensus 95 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 174 (267)
T PRK15112 95 DPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIAD 174 (267)
T ss_pred CchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 110 0000 000000 00 011223345678899999994 6789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 242 EPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 242 EPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||++||+.++..+.++|+++.++ |.|||+||||++++..+||++++|.+
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 225 (267)
T PRK15112 175 EALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQ 225 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999864 89999999999999999999999964
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=275.03 Aligned_cols=180 Identities=20% Similarity=0.296 Sum_probs=146.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---cceeEeecCcCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---EFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---~~~i~y~~q~~~ 423 (605)
+++|++ ...+ +++|++.+| |+++|+|+||||||||+++|+|+.+|++|++. +.... ...++|++|...
T Consensus 8 ~~~~~~-~~l~-~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (195)
T PRK13541 8 QFNIEQ-KNLF-DLSITFLPS-----AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG 80 (195)
T ss_pred eEEECC-cEEE-EEEEEEcCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC
Confidence 666764 2234 488888877 79999999999999999999999999999875 22221 234899999876
Q ss_pred CCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040300 424 PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR 503 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~ 503 (605)
..+..|+.+++...... ......+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||++||+.++
T Consensus 81 ~~~~~tv~~~l~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~ 159 (195)
T PRK13541 81 LKLEMTVFENLKFWSEI-YNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR 159 (195)
T ss_pred CCccCCHHHHHHHHHHh-cccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 66778999987532111 12234567788999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEE
Q 040300 504 IVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRV 538 (605)
Q Consensus 504 ~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrv 538 (605)
..+.++|++.. +.+.|+|+||||..++.. ||.+
T Consensus 160 ~~l~~~l~~~~-~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 160 DLLNNLIVMKA-NSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred HHHHHHHHHHH-hCCCEEEEEeCCccccch-hhee
Confidence 99999998764 468999999999998875 6655
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=287.13 Aligned_cols=204 Identities=23% Similarity=0.293 Sum_probs=144.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCC---ceeeCCCChhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNL---GRFNNPPDWQEIL 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~---G~i~~~~~~~~~~ 144 (605)
+|++.||.+ +|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+. |++.
T Consensus 4 ~l~~~nl~~--------~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~--------- 65 (262)
T PRK09984 4 IIRVEKLAK--------TFNQH-QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIE--------- 65 (262)
T ss_pred EEEEeeEEE--------EeCCe-EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEE---------
Confidence 577777654 45432 2355555 357999999999999999999999999999874 8874
Q ss_pred hhhccchhhhhH---HHHHHHHHHHhhcccccccchh-hhhchhhh-------h------cCchHHHHHHHHHHhhcCCc
Q 040300 145 TYFRGSELQNYF---TRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ-------V------LDQKDERDMKADLCTDLDLN 207 (605)
Q Consensus 145 ~~~~g~~l~~~~---~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~-------~------l~~~~~~~~~~~~l~~l~L~ 207 (605)
+.|..+.... ..........++.+|.....+. .+...+.. . ......+.++.++++.+|+.
T Consensus 66 --~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 143 (262)
T PRK09984 66 --LLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV 143 (262)
T ss_pred --ECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH
Confidence 1222111000 0000000011222232211111 01111100 0 00122345788999999999
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEE
Q 040300 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFI 286 (605)
Q Consensus 208 ~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i 286 (605)
+..++.+.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||++|||++++..+||++
T Consensus 144 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i 223 (262)
T PRK09984 144 HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERI 223 (262)
T ss_pred HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 8999999999999999999999999999999999999999999999999999999764 899999999999999999999
Q ss_pred EEEeCc
Q 040300 287 CCLYGK 292 (605)
Q Consensus 287 ~vl~g~ 292 (605)
++|+.+
T Consensus 224 ~~l~~g 229 (262)
T PRK09984 224 VALRQG 229 (262)
T ss_pred EEEECC
Confidence 999743
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=287.37 Aligned_cols=204 Identities=27% Similarity=0.381 Sum_probs=143.8
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
.|++.|+.+ +|+.. ..+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++...
T Consensus 6 ~l~~~~l~~--------~~~~~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~---------- 66 (258)
T PRK11701 6 LLSVRGLTK--------LYGPR-KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYR---------- 66 (258)
T ss_pred eEEEeeeEE--------EcCCc-eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC----------
Confidence 466666554 55432 3445555 357999999999999999999999999999999998521
Q ss_pred ccch-----hhhhHHHHHHH--HHHHhhcccccc--cchh-hhhchhhhh---c---CchHHHHHHHHHHhhcCCc-hhh
Q 040300 148 RGSE-----LQNYFTRILED--NLKAIIKPQYVD--HIPK-AVQGNVGQV---L---DQKDERDMKADLCTDLDLN-QVI 210 (605)
Q Consensus 148 ~g~~-----l~~~~~~~~~~--~~~~~~~~q~~~--~~~~-~~~~~v~~~---l---~~~~~~~~~~~~l~~l~L~-~~~ 210 (605)
|.. +..+....... .....+.+|... ..+. ....++... . .......++.++++.+++. ..+
T Consensus 67 -g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 145 (258)
T PRK11701 67 -MRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARI 145 (258)
T ss_pred -CccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHH
Confidence 111 11100000000 000112222210 0000 000111110 0 1112345678899999997 478
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEE
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.|+++.++ |.|||+||||++++..+||++++|
T Consensus 146 ~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l 225 (258)
T PRK11701 146 DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM 225 (258)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999999999998765 899999999999999999999999
Q ss_pred eCc
Q 040300 290 YGK 292 (605)
Q Consensus 290 ~g~ 292 (605)
+.+
T Consensus 226 ~~g 228 (258)
T PRK11701 226 KQG 228 (258)
T ss_pred ECC
Confidence 753
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=287.99 Aligned_cols=190 Identities=24% Similarity=0.408 Sum_probs=142.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++...... .+.+.
T Consensus 4 ~l~~~~l~--------~~~~~~-~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~--~i~~v 72 (251)
T PRK09544 4 LVSLENVS--------VSFGQR-RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL--RIGYV 72 (251)
T ss_pred EEEEeceE--------EEECCc-eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCcc--CEEEe
Confidence 57776654 455532 2455555 357999999999999999999999999999999998532100 01110
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc--CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRF 225 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRv 225 (605)
.|+ ....+. ...++.+.+ ......+++.++++.+++.+.+++++.+|||||+||+
T Consensus 73 ----~q~------------------~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv 129 (251)
T PRK09544 73 ----PQK------------------LYLDTT-LPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRV 129 (251)
T ss_pred ----ccc------------------cccccc-cChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHH
Confidence 111 000000 000111110 0001134567899999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+||+||+.+|++|||||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|+++
T Consensus 130 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~ 197 (251)
T PRK09544 130 LLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHH 197 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCc
Confidence 9999999999999999999999999999999999999765 899999999999999999999999753
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=275.66 Aligned_cols=178 Identities=24% Similarity=0.371 Sum_probs=143.6
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc---C----cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI---P----EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~---~----~~~i~y~ 418 (605)
.+.|+.. ...+++++|++.+| |+++|+|+||||||||+++|+|+.+|++|++. +... + ...++|+
T Consensus 13 ~~~~~~~~~~~l~~isl~i~~G-----~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 87 (207)
T cd03369 13 SVRYAPDLPPVLKNVSFKVKAG-----EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTII 87 (207)
T ss_pred EEEeCCCCcccccCceEEECCC-----CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEE
Confidence 6667642 24688999999888 68999999999999999999999999999875 2211 1 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
+|+... +..|+.+++... ... ....+.+.++ .++++.+|||||+|||+|||||+.+|++|||||||++|
T Consensus 88 ~q~~~~-~~~tv~~~l~~~--~~~-~~~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 156 (207)
T cd03369 88 PQDPTL-FSGTIRSNLDPF--DEY-SDEEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASI 156 (207)
T ss_pred ecCCcc-cCccHHHHhccc--CCC-CHHHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence 998754 456999887421 111 2222333333 46789999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|+.++..++++|+++ . .+.|+|++|||++++.. |||+++|+++.
T Consensus 157 D~~~~~~l~~~l~~~-~-~~~tiii~th~~~~~~~-~d~v~~l~~g~ 200 (207)
T cd03369 157 DYATDALIQKTIREE-F-TNSTILTIAHRLRTIID-YDKILVMDAGE 200 (207)
T ss_pred CHHHHHHHHHHHHHh-c-CCCEEEEEeCCHHHHhh-CCEEEEEECCE
Confidence 999999999999997 3 38999999999999976 99999998644
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=268.97 Aligned_cols=154 Identities=29% Similarity=0.509 Sum_probs=128.5
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.... ...++|+
T Consensus 7 ~~~~~~~~~~~l~~i~~~i~~G-----~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (171)
T cd03228 7 SFSYPGRPKPVLKDVSLTIKPG-----EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYV 81 (171)
T ss_pred EEEcCCCCcccccceEEEEcCC-----CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEE
Confidence 5667643 13688999998888 68999999999999999999999999999875 22111 1248888
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
+|+... +..|+.+++ |||||+|||+|||||+.+|++|||||||++|
T Consensus 82 ~~~~~~-~~~t~~e~l---------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gL 127 (171)
T cd03228 82 PQDPFL-FSGTIRENI---------------------------------LSGGQRQRIAIARALLRDPPILILDEATSAL 127 (171)
T ss_pred cCCchh-ccchHHHHh---------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCC
Confidence 887532 334555443 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
|+.++..+.++|+++. + +.|+|++|||++++.. ||++++|+++
T Consensus 128 D~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~~~~l~~g 170 (171)
T cd03228 128 DPETEALILEALRALA-K-GKTVIVIAHRLSTIRD-ADRIIVLDDG 170 (171)
T ss_pred CHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHHh-CCEEEEEcCC
Confidence 9999999999999984 3 6999999999999987 9999999753
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=270.57 Aligned_cols=158 Identities=31% Similarity=0.444 Sum_probs=132.5
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeec
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~ 419 (605)
++.|++. ...+++++|++.+| |+++|+||||||||||+++|+|+.+|++|++. +.... ...++|++
T Consensus 7 ~~~~~~~~~~~l~~i~~~i~~G-----e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 81 (178)
T cd03247 7 SFSYPEQEQQVLKNLSLELKQG-----EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLN 81 (178)
T ss_pred EEEeCCCCccceEEEEEEEcCC-----CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEc
Confidence 5667643 13688999999888 78999999999999999999999999999875 21111 23589999
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
|+... +..|+++++ +.+|||||+|||+|||||+.+|++|||||||++||
T Consensus 82 q~~~~-~~~tv~~~i------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD 130 (178)
T cd03247 82 QRPYL-FDTTLRNNL------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130 (178)
T ss_pred cCCee-ecccHHHhh------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 97543 345665543 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+.++..++++|+++ . .+.|+|++|||.+++. .|||+++|+++.
T Consensus 131 ~~~~~~l~~~l~~~-~-~~~tii~~sh~~~~~~-~~d~~~~l~~g~ 173 (178)
T cd03247 131 PITERQLLSLIFEV-L-KDKTLIWITHHLTGIE-HMDKILFLENGK 173 (178)
T ss_pred HHHHHHHHHHHHHH-c-CCCEEEEEecCHHHHH-hCCEEEEEECCE
Confidence 99999999999998 3 3899999999999986 699999998654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=285.00 Aligned_cols=201 Identities=22% Similarity=0.256 Sum_probs=142.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC-----CceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN-----LGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-----~G~i~~~~~~~~ 142 (605)
+|++.|+. ++|+.. ..+++++ .+.+||+++|+|+||||||||+|+|+|+++|+ .|++..
T Consensus 7 ~l~~~~l~--------~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~------ 71 (254)
T PRK14273 7 IIETENLN--------LFYTDF-KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY------ 71 (254)
T ss_pred eEEEeeeE--------EEeCCc-eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEE------
Confidence 67777654 456532 2455555 35799999999999999999999999999974 788742
Q ss_pred hhhhhccchhhh--hHHHHHHHHHHHhhcccccccchhhhhchhhh---h---cCchHHHHHHHHHHhhcCC----chhh
Q 040300 143 ILTYFRGSELQN--YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQ---V---LDQKDERDMKADLCTDLDL----NQVI 210 (605)
Q Consensus 143 ~~~~~~g~~l~~--~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~---~---l~~~~~~~~~~~~l~~l~L----~~~~ 210 (605)
.|..+.. ...... ....++.+|.....+..+..++.. . ......++++.++++.+++ .+.+
T Consensus 72 -----~g~~i~~~~~~~~~~--~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~ 144 (254)
T PRK14273 72 -----EGKNIYSNNFDILEL--RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKL 144 (254)
T ss_pred -----CCEecccccccHHHH--hhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHH
Confidence 2221110 000000 001122222211111111111110 0 0112234567788888887 4568
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
++.+.+|||||+||++|||||+.+|++|||||||++||+.++..++++|+++.+ +.|||+||||++++..+||++++|.
T Consensus 145 ~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~ 223 (254)
T PRK14273 145 NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQAGRISDRTAFFL 223 (254)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999964 7999999999999999999999996
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
++
T Consensus 224 ~G 225 (254)
T PRK14273 224 NG 225 (254)
T ss_pred CC
Confidence 43
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=282.00 Aligned_cols=173 Identities=22% Similarity=0.361 Sum_probs=146.1
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHh
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
++++++||++..| |++||+|+||||||||.|+|+|+++|++|+|. |..+++.. .+
T Consensus 27 ~avd~Vsf~i~~g-----e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~----------f~g~~i~~---~~------- 81 (268)
T COG4608 27 KAVDGVSFSIKEG-----ETLGLVGESGCGKSTLGRLILGLEEPTSGEIL----------FEGKDITK---LS------- 81 (268)
T ss_pred EEecceeEEEcCC-----CEEEEEecCCCCHHHHHHHHHcCcCCCCceEE----------EcCcchhh---cc-------
Confidence 5788999999988 79999999999999999999999999999874 11111100 01
Q ss_pred hhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 040300 437 KIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 515 (605)
.....+.+.++|+.+|+. +.+++++++|||||+||++|||||+.+|+++++|||+|+||+..+.++.++|+++.+
T Consensus 82 ----~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~ 157 (268)
T COG4608 82 ----KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157 (268)
T ss_pred ----hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH
Confidence 011124577899999987 589999999999999999999999999999999999999999999999999999988
Q ss_pred cCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 516 HAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 516 ~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.|.|.++||||+..+.++||||+||.-+..+ ..++.++++..
T Consensus 158 ~~~lt~lFIsHDL~vv~~isdri~VMy~G~iV--E~g~~~~~~~~ 200 (268)
T COG4608 158 ELGLTYLFISHDLSVVRYISDRIAVMYLGKIV--EIGPTEEVFSN 200 (268)
T ss_pred HhCCeEEEEEEEHHhhhhhcccEEEEecCcee--EecCHHHHhhC
Confidence 88999999999999999999999999854443 34666777664
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=288.71 Aligned_cols=202 Identities=21% Similarity=0.270 Sum_probs=142.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP-----NLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-----~~G~i~~~~~~~~ 142 (605)
.|++.|+ +++|+.. ..|++++ .+++||+++|+|+||||||||+++|+|+++| +.|+|..
T Consensus 19 ~l~~~nl--------~~~~~~~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~------ 83 (267)
T PRK14235 19 KMRARDV--------SVFYGEK-QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL------ 83 (267)
T ss_pred eEEEEeE--------EEEECCE-EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE------
Confidence 4666665 4566542 3455555 3589999999999999999999999999975 8898852
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhh-----c--CchHHHHHHHHHHhhcCCch----hhc
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQV-----L--DQKDERDMKADLCTDLDLNQ----VID 211 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~-----l--~~~~~~~~~~~~l~~l~L~~----~~d 211 (605)
.|..+...-...........+.+|.....+..+..++... + .......++.++++.++|.+ .++
T Consensus 84 -----~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 158 (267)
T PRK14235 84 -----DGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLH 158 (267)
T ss_pred -----CCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhh
Confidence 2221110000000000011222222111111111111100 0 11223456788999999953 578
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+.
T Consensus 159 ~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~ 237 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHL 237 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEEC
Confidence 89999999999999999999999999999999999999999999999999976 78999999999999999999999974
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=273.27 Aligned_cols=198 Identities=20% Similarity=0.356 Sum_probs=149.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
.+...||.| +|+... .+++++ .+++||++||+|||||||||.+.++.|+++|++|++. +
T Consensus 4 ~L~a~~l~K--------~y~kr~-Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~-----------l 63 (243)
T COG1137 4 TLVAENLAK--------SYKKRK-VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKIL-----------L 63 (243)
T ss_pred EEEehhhhH--------hhCCee-eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEE-----------E
Confidence 355556655 454431 233333 3479999999999999999999999999999999985 2
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhc-hhhhh----cC-----c--hHHHHHHHHHHhhcCCchhhcccCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG-NVGQV----LD-----Q--KDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~-~v~~~----l~-----~--~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
.+.++..... ..++-....|+.|.+..+.+ +|.+. ++ . ...+.+++++++.|.|.++.+++..
T Consensus 64 d~~diT~lPm-----~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~ 138 (243)
T COG1137 64 DDEDITKLPM-----HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY 138 (243)
T ss_pred CCcccccCCh-----HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccc
Confidence 2222221110 00111222344444444433 33322 11 1 1223457799999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+||||||+|+.|||||+.+|++++||||+++.||.+..++.++|+.|+..|..|+++.|+..+...+|||..+++.
T Consensus 139 sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~ 214 (243)
T COG1137 139 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISD 214 (243)
T ss_pred ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999963
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=283.20 Aligned_cols=189 Identities=23% Similarity=0.284 Sum_probs=140.4
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+++||++||+|+||||||||+++|+|+++|+.|++... |..+....
T Consensus 5 ~v~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~-----------~~~~~~~~---- 68 (223)
T TIGR03740 5 NLSKRFGKQ-TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFD-----------GHPWTRKD---- 68 (223)
T ss_pred eEEEEECCE-EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC-----------CEeccccc----
Confidence 455566543 2455555 357999999999999999999999999999999987521 11110000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcC-----chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLD-----QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~-----~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
.....+.+|.....+. .++.+.+. ......++.++++.++|++.+++.+.+|||||+||++||+|++.+|
T Consensus 69 --~~~~~~~~q~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 69 --LHKIGSLIESPPLYEN---LTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred --cccEEEEcCCCCcccc---CCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 0001111221111110 01111110 0011346788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++|||||||++||+.++..+.++|+++.+++.|||++|||++++..+||++++|..
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 199 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISE 199 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeC
Confidence 99999999999999999999999999977789999999999999999999999964
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=265.23 Aligned_cols=153 Identities=31% Similarity=0.436 Sum_probs=121.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +....+.. .
T Consensus 7 ~~~~~~~-~vl~~i~~~i~~G-----e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~---~~g~~~~~----------~ 67 (163)
T cd03216 7 TKRFGGV-KALDGVSLSVRRG-----EVHALLGENGAGKSTLMKILSGLYKPDSGEIL---VDGKEVSF----------A 67 (163)
T ss_pred EEEECCe-EEEeeeEEEEeCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCEECCc----------C
Confidence 6778753 4788999998888 78999999999999999999999999999864 11111100 0
Q ss_pred cHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040300 429 TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAK 508 (605)
Q Consensus 429 tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~ 508 (605)
+..+.....+ + .+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+
T Consensus 68 ~~~~~~~~~i-----------------~-------~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~ 123 (163)
T cd03216 68 SPRDARRAGI-----------------A-------MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123 (163)
T ss_pred CHHHHHhcCe-----------------E-------EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 1111110000 0 011199999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 509 VIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 509 ~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
+|+++.+ .+.|+|++|||++++..+|||+++|+++.
T Consensus 124 ~l~~~~~-~~~tiii~sh~~~~~~~~~d~~~~l~~g~ 159 (163)
T cd03216 124 VIRRLRA-QGVAVIFISHRLDEVFEIADRVTVLRDGR 159 (163)
T ss_pred HHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999854 48999999999999999999999998653
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=290.78 Aligned_cols=203 Identities=23% Similarity=0.307 Sum_probs=144.5
Q ss_pred eEEEecCCcccCCCceEEeCC-----CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGP-----NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~-----~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~ 142 (605)
+|++.|| +++|+. +...|.+++ .+.+||+++|+|+||||||||+++|+|+++|+.|++...
T Consensus 4 ~l~~~~l--------~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~----- 70 (280)
T PRK13633 4 MIKCKNV--------SYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVD----- 70 (280)
T ss_pred eEEEeee--------EEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC-----
Confidence 5666665 445642 123566666 468999999999999999999999999999999988521
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccc--cchhhhhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCC
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVD--HIPKAVQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~--~~~~~~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
|..+..... ........++.+|... ..+..+...+. .. ......++++.++++.+||.+.+++.+.
T Consensus 71 ------g~~i~~~~~-~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 143 (280)
T PRK13633 71 ------GLDTSDEEN-LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPH 143 (280)
T ss_pred ------CEecccccc-HHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc
Confidence 111110000 0000000111122110 00000000110 00 1122335678899999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++.. ||++++|+.+
T Consensus 144 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G 220 (280)
T PRK13633 144 LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSG 220 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999764 8999999999999986 9999999643
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=280.91 Aligned_cols=196 Identities=26% Similarity=0.412 Sum_probs=138.2
Q ss_pred eEEEecCCcccCCCceEEeCCC--ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN--TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~--~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
+|++.|+ +++|+.. ...+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++...
T Consensus 11 ~l~~~~l--------~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~-------- 74 (226)
T cd03248 11 IVKFQNV--------TFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLD-------- 74 (226)
T ss_pred eEEEEEE--------EEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEEC--------
Confidence 5666665 4466432 12455555 357999999999999999999999999999999987521
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC------------chHHHHHHHHHHhhc--CCchhhc
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD------------QKDERDMKADLCTDL--DLNQVID 211 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~------------~~~~~~~~~~~l~~l--~L~~~~d 211 (605)
|..+..+..... ....++.+|. +..+..++.+.+. .......+.++++.+ |+++.++
T Consensus 75 ---g~~~~~~~~~~~--~~~i~~~~q~----~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~ 145 (226)
T cd03248 75 ---GKPISQYEHKYL--HSKVSLVGQE----PVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVG 145 (226)
T ss_pred ---CCchHHcCHHHH--HhhEEEEecc----cHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhh
Confidence 111110000000 0001111111 1111111111110 001112346778888 8888899
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+.+|||||+||++||+||+.+|++|||||||++||+..+..+.++|+++.+ +.|||+||||++++.. ||+|++|++
T Consensus 146 ~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~ 223 (226)
T cd03248 146 EKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVER-ADQILVLDG 223 (226)
T ss_pred cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHh-CCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999876 6899999999999975 999999964
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=285.59 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=142.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC-----CceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN-----LGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-----~G~i~~~~~~~~ 142 (605)
+|++.|| +++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+++|+ .|++..
T Consensus 4 ~l~~~~l--------~~~~~~~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~------ 68 (253)
T PRK14267 4 AIETVNL--------RVYYGSN-HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL------ 68 (253)
T ss_pred eEEEEeE--------EEEeCCe-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE------
Confidence 5666665 4466542 3466666 45899999999999999999999999999874 898742
Q ss_pred hhhhhccchhhh--hHHHHHHHHHHHhhcccccccchh-hhhchhhhh--c-----CchHHHHHHHHHHhhcCCc----h
Q 040300 143 ILTYFRGSELQN--YFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV--L-----DQKDERDMKADLCTDLDLN----Q 208 (605)
Q Consensus 143 ~~~~~~g~~l~~--~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~--l-----~~~~~~~~~~~~l~~l~L~----~ 208 (605)
.|.++.. ....... ...++.+|.....+. .+..++... . .......++.++++.+++. +
T Consensus 69 -----~g~~i~~~~~~~~~~~--~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 141 (253)
T PRK14267 69 -----FGRNIYSPDVDPIEVR--REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD 141 (253)
T ss_pred -----CCEEccccccChHHHh--hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh
Confidence 2222110 0000000 012222332221111 111111100 0 1122335677889999884 4
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
.+++++.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+ ++|||++|||++++..+||+|++
T Consensus 142 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~ 220 (253)
T PRK14267 142 RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAF 220 (253)
T ss_pred hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEE
Confidence 67899999999999999999999999999999999999999999999999999975 69999999999999999999999
Q ss_pred EeC
Q 040300 289 LYG 291 (605)
Q Consensus 289 l~g 291 (605)
|..
T Consensus 221 l~~ 223 (253)
T PRK14267 221 LYL 223 (253)
T ss_pred EEC
Confidence 964
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=282.72 Aligned_cols=192 Identities=24% Similarity=0.327 Sum_probs=142.9
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. ..+++++ .+.+|+++||+|+||||||||+++|+|+++|+.|++.. .|..+......
T Consensus 5 ~l~~~~~~~-~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~-----------~g~~~~~~~~~-- 70 (232)
T cd03300 5 NVSKFYGGF-VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL-----------DGKDITNLPPH-- 70 (232)
T ss_pred eEEEEeCCe-eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------CCEEcCcCChh--
Confidence 456677643 3456666 46899999999999999999999999999999998742 11111100000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhc---------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVL---------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l---------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
....++.+|.....+. .++.+.+ .......++.++++.+|+.+.+++.+.+|||||+||++||+||
T Consensus 71 --~~~i~~~~q~~~~~~~---~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral 145 (232)
T cd03300 71 --KRPVNTVFQNYALFPH---LTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred --hcceEEEecccccCCC---CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 0011111221111110 0111111 1122345678899999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|+++||||||++||+.++.++.++|+++.++ |.|||++||+++++..+||++++|+.+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G 207 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKG 207 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999864 899999999999999999999999643
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=314.19 Aligned_cols=198 Identities=27% Similarity=0.366 Sum_probs=156.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
+++|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++.. .....++|++|++......
T Consensus 11 s~~~~~~~~il~~is~~i~~G-----e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~--~~~~~i~~v~Q~~~~~~~~ 83 (552)
T TIGR03719 11 SKVVPPKKEILKDISLSFFPG-----AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP--APGIKVGYLPQEPQLDPTK 83 (552)
T ss_pred EEecCCCCeeecCceEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe--cCCCEEEEEeccCCCCCCC
Confidence 777862234789999999888 689999999999999999999999999999741 1235799999997655567
Q ss_pred cHHHHHHhhhc-----------------cCCCC-----------------------HHHHHHHHhhcCCchhhccCcCcC
Q 040300 429 TVRHLLHQKIR-----------------DSYTH-----------------------PQFVSDVMKPLLIEQLMDQEVVNL 468 (605)
Q Consensus 429 tv~~~~~~~~~-----------------~~~~~-----------------------~~~~~~~l~~l~l~~~~~~~~~~L 468 (605)
|+.+++..... ..... ...+.++++.+++.. .++++.+|
T Consensus 84 tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~L 162 (552)
T TIGR03719 84 TVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKL 162 (552)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhc
Confidence 99887642110 00000 123455677788854 68899999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCccee
Q 040300 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVD 548 (605)
Q Consensus 469 SGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~ 548 (605)
||||||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++++.+...
T Consensus 163 SgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~l~~g~i~- 237 (552)
T TIGR03719 163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILELDRGRGI- 237 (552)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEECCEEE-
Confidence 999999999999999999999999999999999999999999875 359999999999999999999999854322
Q ss_pred eecCChhhhhc
Q 040300 549 CVANAPQSLLT 559 (605)
Q Consensus 549 ~~~~~p~~~~~ 559 (605)
...|++.++..
T Consensus 238 ~~~g~~~~~~~ 248 (552)
T TIGR03719 238 PWEGNYSSWLE 248 (552)
T ss_pred EecCCHHHHHH
Confidence 24466665433
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=284.61 Aligned_cols=208 Identities=28% Similarity=0.367 Sum_probs=143.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCC-Chhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP-DWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~-~~~~~~~~ 146 (605)
+|++.|+ +++|+.. ..+.+++ .+++|++++|+|+||||||||+++|+|+++|+.|++.... .+..+
T Consensus 3 ~l~~~~l--------~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--- 70 (253)
T TIGR02323 3 LLQVSGL--------SKSYGGG-KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAEL--- 70 (253)
T ss_pred eEEEeee--------EEEeCCc-eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccccccc---
Confidence 4666665 4466532 2355555 3579999999999999999999999999999999985211 00000
Q ss_pred hccchhhhhHHHHHHHH--HHHhhccccccc--chh-hhhchhhhh---c---CchHHHHHHHHHHhhcCCc-hhhcccC
Q 040300 147 FRGSELQNYFTRILEDN--LKAIIKPQYVDH--IPK-AVQGNVGQV---L---DQKDERDMKADLCTDLDLN-QVIDRNV 214 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~--~~~~~~~q~~~~--~~~-~~~~~v~~~---l---~~~~~~~~~~~~l~~l~L~-~~~dr~v 214 (605)
++..+........ ....+.+|.... .+. ....++... . ........+.++++.+++. ..+++.+
T Consensus 71 ----~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 146 (253)
T TIGR02323 71 ----ELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLP 146 (253)
T ss_pred ----ccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCc
Confidence 0110000000000 001122221100 000 000111100 0 0112345678899999997 5899999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 215 ~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.+|||||+|||+||+||+.+|++|||||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|+.+
T Consensus 147 ~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G 225 (253)
T TIGR02323 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225 (253)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999999998764 899999999999999999999999643
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=282.11 Aligned_cols=195 Identities=22% Similarity=0.287 Sum_probs=139.9
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC---CCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK---PNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+.. ..+.+++ .+.+||++||+|+||||||||+++|+|+++ |+.|++.. .|.++......
T Consensus 8 l~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~-----------~g~~i~~~~~~ 75 (246)
T PRK14269 8 LNLFYGKK-QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEI-----------EGKDVKNQDVV 75 (246)
T ss_pred eEEEECCE-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEE-----------CCEecccCCHH
Confidence 45566542 3456665 457999999999999999999999999974 68998752 22221110000
Q ss_pred HHHHHHHHhhcccccccchhhhhchhh------hhc-CchHHHHHHHHHHhhcCCc----hhhcccCCCCChHHHHHHHH
Q 040300 159 ILEDNLKAIIKPQYVDHIPKAVQGNVG------QVL-DQKDERDMKADLCTDLDLN----QVIDRNVGDLSGGELQRFAI 227 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~~~~~~v~------~~l-~~~~~~~~~~~~l~~l~L~----~~~dr~v~~LSGGe~QRvaI 227 (605)
... ...++.+|.....+..+..++. ... .....+.++.++++.+++. +.+++.+.+|||||+||++|
T Consensus 76 ~~~--~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 76 ALR--KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred HHh--hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence 000 0112223322111111111110 000 1123345678899999994 46789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+.+|++|||||||++||+..+..+.+.|+++.+ +.|||+||||++++..+||++++|+.+
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECC
Confidence 9999999999999999999999999999999999865 899999999999999999999999753
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=271.48 Aligned_cols=164 Identities=23% Similarity=0.278 Sum_probs=135.3
Q ss_pred eeecCC---ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeee--cccc---CcceeEee
Q 040300 349 RYKYPT---MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDS--DVEI---PEFNVSYK 418 (605)
Q Consensus 349 ~~~y~~---~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~--~~~~---~~~~i~y~ 418 (605)
++.|++ ....+++++|++.+| |+++|+||||||||||+++|+|+. +|++|++. +... ....++|+
T Consensus 10 ~~~~~~~~~~~~~l~~vs~~i~~G-----e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~ 84 (192)
T cd03232 10 NYTVPVKGGKRQLLNNISGYVKPG-----TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYV 84 (192)
T ss_pred EEEecCCCCceEeEEccEEEEeCC-----cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEe
Confidence 667764 134688999988888 789999999999999999999986 48999875 2221 12368999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
+|+....+..|+++++.... .++ +|||||+|||+|||||+.+|++|||||||++|
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~------------~~~-------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~L 139 (192)
T cd03232 85 EQQDVHSPNLTVREALRFSA------------LLR-------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGL 139 (192)
T ss_pred cccCccccCCcHHHHHHHHH------------HHh-------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCC
Confidence 99876555579988874210 000 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecCHH-HHHhhcCEEEEEeC
Q 040300 499 DSEQRIVAAKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVYEG 543 (605)
Q Consensus 499 D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~-~~~~~adrviv~~g 543 (605)
|+.++..++++|+++.+ .+.|+|+||||++ .+..+|||+++|++
T Consensus 140 D~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~ 184 (192)
T cd03232 140 DSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKR 184 (192)
T ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcC
Confidence 99999999999999854 5899999999998 47789999999975
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=309.63 Aligned_cols=184 Identities=29% Similarity=0.384 Sum_probs=153.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
++.|++. ..+++++|++.+| +++||||+||+|||||||+|+|.+.|++|+|. ..+..+++|++|+.......
T Consensus 10 s~~~g~~-~l~~~~~l~~~~G-----~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~--~~~~~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 10 SLAYGDR-PLLENVSLTLNPG-----ERIGLVGRNGAGKSTLLKILAGELEPDSGEVT--RPKGLRVGYLSQEPPLDPEK 81 (530)
T ss_pred EEeeCCc-eeecCCcceeCCC-----CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEe--ecCCceEEEeCCCCCcCCCc
Confidence 6777653 4688999998888 79999999999999999999999999999973 23346899999998766666
Q ss_pred cHHHHHHhhhcc----------------------------------CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHH
Q 040300 429 TVRHLLHQKIRD----------------------------------SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQ 474 (605)
Q Consensus 429 tv~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~Q 474 (605)
||.+.+...... .+.....+..++..+|+... ++++.+||||||.
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~ 160 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRR 160 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHH
Confidence 887654321100 01112456678888999877 9999999999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 475 RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 475 RvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||+||+||..+||+|||||||||||.++...+.+.|+++ .| |+|+||||.+|+..+|++|+-++.+.
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~~ld~g~ 227 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHILELDRGK 227 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheEEecCCc
Confidence 999999999999999999999999999999888888875 35 99999999999999999999998653
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=283.71 Aligned_cols=200 Identities=24% Similarity=0.329 Sum_probs=142.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP-----NLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-----~~G~i~~~~~~~~ 142 (605)
+|++.|+ +++|+.. ..+.+++ .+.+||++||+|+||||||||+++|+|+++| +.|++..
T Consensus 3 ~l~~~~l--------~~~~~~~-~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~------ 67 (250)
T PRK14247 3 KIEIRDL--------KVSFGQV-EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL------ 67 (250)
T ss_pred eEEEEee--------EEEECCe-eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE------
Confidence 4666665 4466542 3455665 4579999999999999999999999999985 6898742
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhh------hhc-CchHHHHHHHHHHhhcCCc----hhh
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVG------QVL-DQKDERDMKADLCTDLDLN----QVI 210 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~------~~l-~~~~~~~~~~~~l~~l~L~----~~~ 210 (605)
.|..+......... ...++.+|.....+. .+..++. ... ......+++.++++.++|. +.+
T Consensus 68 -----~g~~i~~~~~~~~~--~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14247 68 -----DGQDIFKMDVIELR--RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRL 140 (250)
T ss_pred -----CCEECCcCCHHHHh--ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhh
Confidence 22221110000000 011222222111111 1111111 000 1122345678899999985 467
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
++.+.+|||||+||++||+||+.+|++|||||||++||+.++.++.++|+++.+ +.|||++|||++++..+||++++|.
T Consensus 141 ~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 219 (250)
T PRK14247 141 DAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLY 219 (250)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999865 8999999999999999999999996
Q ss_pred C
Q 040300 291 G 291 (605)
Q Consensus 291 g 291 (605)
.
T Consensus 220 ~ 220 (250)
T PRK14247 220 K 220 (250)
T ss_pred C
Confidence 4
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=257.05 Aligned_cols=192 Identities=28% Similarity=0.331 Sum_probs=160.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc-----cC--------cc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE-----IP--------EF 413 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~-----~~--------~~ 413 (605)
.+.|+. +.++-+++|+..+| |.+.++||+|+|||||+|.|.=+.-|.+|+.. +.. .+ +.
T Consensus 9 n~~yg~-~q~lfdi~l~~~~g-----etlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~ 82 (242)
T COG4161 9 NCFYGA-HQALFDITLDCPEG-----ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRR 82 (242)
T ss_pred cccccc-chheeeeeecCCCC-----CEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHH
Confidence 556664 34677888888888 78999999999999999999999999999753 110 11 13
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhh---hccCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQK---IRDSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~---~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
++|+++|.......+||.+++... +.... .....+.++++++.+.++.|+.|-.|||||+|||||||||+++|++
T Consensus 83 ~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqv 162 (242)
T COG4161 83 NVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred hhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcE
Confidence 589999987776778999887431 11111 1234677899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcce
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSV 547 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~ 547 (605)
||+||||++|||+-..++.++|+++. +.|.|-++|||+.+.+...|.||+.|+.+..+
T Consensus 163 llfdeptaaldpeitaqvv~iikel~-~tgitqvivthev~va~k~as~vvyme~g~iv 220 (242)
T COG4161 163 LLFDEPTAALDPEITAQIVSIIKELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred EeecCcccccCHHHHHHHHHHHHHHH-hcCceEEEEEeehhHHHhhhhheEeeecCeeE
Confidence 99999999999999999999999985 56999999999999999999999999976544
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=275.01 Aligned_cols=172 Identities=29% Similarity=0.387 Sum_probs=122.9
Q ss_pred eecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccc
Q 040300 94 LHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQY 172 (605)
Q Consensus 94 l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~ 172 (605)
+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|.++.........-....++.+|.
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-----------~g~~~~~~~~~~~~~~~~i~~~~q~ 76 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI-----------DGEPLDYSRKGLLERRQRVGLVFQD 76 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE-----------CCEEccccccchHHHHhhEEEEecC
Confidence 44444 34799999999999999999999999999999998842 1211100000000000011122222
Q ss_pred cccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 040300 173 VDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEP 243 (605)
Q Consensus 173 ~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEP 243 (605)
... ..+..++.+. .......+++.++++.++|.+..++.+.+|||||+||++||+||+.+|+++|||||
T Consensus 77 ~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 77 PDD--QLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred hhh--ccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 100 0000111111 11122345678899999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhH
Q 040300 244 SSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSV 278 (605)
Q Consensus 244 ts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~ 278 (605)
|++||+..+..+.++|+++.++|.|||+||||+++
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999999998778999999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=272.22 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=134.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcC--CCCCeeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl--~~p~~G~i~--~~~~~--------~~~i~ 416 (605)
++.|++ ...+++++|++.+| |+++|+|+||||||||+++|+|+ .+|++|++. +.... ...++
T Consensus 7 ~~~~~~-~~~l~~is~~i~~G-----e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 7 HVSVGG-KEILKGVNLTIKKG-----EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred EEEeCC-EEeeeccceEECCC-----cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence 667765 34688999988888 78999999999999999999999 479999875 22211 12489
Q ss_pred eecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 417 YKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
|+||+.......++.+++ ++...+|||||+|||+|||||+.+|++|||||||+
T Consensus 81 ~v~q~~~~~~~~~~~~~l---------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~ 133 (200)
T cd03217 81 LAFQYPPEIPGVKNADFL---------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDS 133 (200)
T ss_pred EeecChhhccCccHHHHH---------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999985443334444433 12346899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcCEEEEEeCCcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATY-LADRVIVYEGQPS 546 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~-~adrviv~~g~~~ 546 (605)
+||+.++..+.++|+++.+ .+.|+|++|||++++.. +|||+++++++..
T Consensus 134 ~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i 183 (200)
T cd03217 134 GLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLDYIKPDRVHVLYDGRI 183 (200)
T ss_pred cCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhhCCEEEEEECCEE
Confidence 9999999999999999854 48999999999999988 7999999986543
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=275.75 Aligned_cols=190 Identities=15% Similarity=0.084 Sum_probs=145.3
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhh
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQK 437 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~ 437 (605)
++++++|++.+| |+++|+||||||||||+|+|+|+++|++|++.........++ +........|+.+++...
T Consensus 2 vl~~vs~~i~~G-----e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~---~~~~l~~~ltv~enl~~~ 73 (213)
T PRK15177 2 VLDKTDFVMGYH-----EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLG---ANSFILPGLTGEENARMM 73 (213)
T ss_pred eeeeeeEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccc---cccccCCcCcHHHHHHHH
Confidence 478899998888 689999999999999999999999999998741111111122 222233456999987542
Q ss_pred hc-cCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 040300 438 IR-DSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 438 ~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 516 (605)
.. ...........+.+.+++....++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~- 152 (213)
T PRK15177 74 ASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ- 152 (213)
T ss_pred HHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-
Confidence 21 1122222334455667888888999999999999999999999999999999999999999999999998876543
Q ss_pred CCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 517 AKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 517 ~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+.|+|++|||+.++..+||++++|+++.. ...++.+++.+
T Consensus 153 -~~~ii~vsH~~~~~~~~~d~i~~l~~G~i--~~~~~~~~~~~ 192 (213)
T PRK15177 153 -QKGLIVLTHNPRLIKEHCHAFGVLLHGKI--TMCEDLAQATA 192 (213)
T ss_pred -CCcEEEEECCHHHHHHhcCeeEEEECCeE--EEeCCHHHHHH
Confidence 46899999999999999999999986543 34566555543
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=283.20 Aligned_cols=199 Identities=24% Similarity=0.290 Sum_probs=140.1
Q ss_pred CCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceeeCCCChhhhhhhhccchhhh
Q 040300 81 KDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-----PNLGRFNNPPDWQEILTYFRGSELQN 154 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~~~~~~~g~~l~~ 154 (605)
++++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+.+ |+.|++.. .|..+..
T Consensus 9 ~~l~~~~~~~-~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~-----------~g~~i~~ 76 (251)
T PRK14244 9 KNLNLWYGSK-QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDI-----------DGIDVYS 76 (251)
T ss_pred eeEEEEECCe-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEE-----------CCEehHh
Confidence 3566677642 3456666 468999999999999999999999999986 46898752 2221111
Q ss_pred hHHHHHHHHHHHhhcccccccchhhhhchhhhh--c-----CchHHHHHHHHHHhhcCCch----hhcccCCCCChHHHH
Q 040300 155 YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQV--L-----DQKDERDMKADLCTDLDLNQ----VIDRNVGDLSGGELQ 223 (605)
Q Consensus 155 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~--l-----~~~~~~~~~~~~l~~l~L~~----~~dr~v~~LSGGe~Q 223 (605)
.......-.-..++.+|.....+..+..++... . .....+..+.++++.++|.+ .+++.+.+|||||+|
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQ 156 (251)
T ss_pred cccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHH
Confidence 000000000011222232111111111111100 0 01123345778899999964 568899999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|++||+||+.+|++|||||||++||+.++..+.+.|+++.+ ++|||+||||++++..+||++++|+.+
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G 224 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQSG 224 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEECC
Confidence 99999999999999999999999999999999999999865 899999999999999999999999753
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=281.18 Aligned_cols=192 Identities=26% Similarity=0.364 Sum_probs=133.3
Q ss_pred CceEEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH
Q 040300 82 DTTHRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI 159 (605)
Q Consensus 82 ~~~~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~ 159 (605)
+++++|+. +...+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++... |..+.......
T Consensus 5 ~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~-----------g~~~~~~~~~~ 73 (237)
T cd03252 5 HVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVD-----------GHDLALADPAW 73 (237)
T ss_pred EEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC-----------CeehHhcCHHH
Confidence 45567753 223456665 457999999999999999999999999999999988521 21111100000
Q ss_pred HHHHHHHhhcccccccchhhhhchhhhhcC-------chH-----HHHHHHHHHhhc--CCchhhcccCCCCChHHHHHH
Q 040300 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLD-------QKD-----ERDMKADLCTDL--DLNQVIDRNVGDLSGGELQRF 225 (605)
Q Consensus 160 ~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~-------~~~-----~~~~~~~~l~~l--~L~~~~dr~v~~LSGGe~QRv 225 (605)
... ...+.+|... .+..++.+.+. ... ....+.++++.+ ++...+++++.+|||||+|||
T Consensus 74 ~~~--~i~~~~q~~~----~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv 147 (237)
T cd03252 74 LRR--QVGVVLQENV----LFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRI 147 (237)
T ss_pred Hhh--cEEEEcCCch----hccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHH
Confidence 000 0111122111 11111111110 000 011223455555 666677889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+||+||+.+|++|||||||++||+..+..+.+.|+++.+ |.|||++|||++++. .||++++|+.+
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~-~~d~v~~l~~G 212 (237)
T cd03252 148 AIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVK-NADRIIVMEKG 212 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence 999999999999999999999999999999999999975 899999999999996 59999999753
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=286.18 Aligned_cols=196 Identities=28% Similarity=0.302 Sum_probs=140.4
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCC--------CceeeCCCChhhhhhhhccchhh
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPN--------LGRFNNPPDWQEILTYFRGSELQ 153 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~--------~G~i~~~~~~~~~~~~~~g~~l~ 153 (605)
++++|+.. ..|.+++ .+.+|++++|+|+||||||||+|+|+|+++|+ .|++.. .|..+.
T Consensus 7 l~~~~~~~-~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~-----------~g~~~~ 74 (272)
T PRK13547 7 LHVARRHR-AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL-----------NGEPLA 74 (272)
T ss_pred EEEEECCE-eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE-----------CCEEcc
Confidence 34566543 3455665 35899999999999999999999999999998 788742 222211
Q ss_pred hhHHHHHHHHHHHhhcccccccch-hhhhchhhhh-c--------CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHH
Q 040300 154 NYFTRILEDNLKAIIKPQYVDHIP-KAVQGNVGQV-L--------DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQ 223 (605)
Q Consensus 154 ~~~~~~~~~~~~~~~~~q~~~~~~-~~~~~~v~~~-l--------~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~Q 223 (605)
......... ...+.+|.....+ ..+..++... . ......+++.++++.++|.+.+++++.+|||||+|
T Consensus 75 ~~~~~~~~~--~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 152 (272)
T PRK13547 75 AIDAPRLAR--LRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELA 152 (272)
T ss_pred cCCHHHHHh--hcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH
Confidence 110000000 0111222111000 0011111000 0 01123456788999999999999999999999999
Q ss_pred HHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 224 RFAIAVVAV---------QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 224 RvaIA~aL~---------~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||+||+||+ .+|++|||||||++||+..+..+.++|+++.++ +.|||+||||++++..+||++++|..+
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999 599999999999999999999999999999875 899999999999999999999999643
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=273.97 Aligned_cols=200 Identities=23% Similarity=0.377 Sum_probs=154.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
|++|.+++| +||.. -.+++++ .+.+|++.|++|+|||||||++++|.|++.|+.|+|..
T Consensus 2 ~L~ie~vtK--------~Fg~k-~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~----------- 61 (300)
T COG4152 2 ALEIEGVTK--------SFGDK-KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITW----------- 61 (300)
T ss_pred ceEEecchh--------ccCce-eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEE-----------
Confidence 567776655 56654 2355555 35799999999999999999999999999999999963
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhh---------hcCchHHHHHHHHHHhhcCCchhhcccCCCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQ---------VLDQKDERDMKADLCTDLDLNQVIDRNVGDLS 218 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~---------~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LS 218 (605)
.|.++..-. .-+..+.|..-..-|+. +|.+ -.+..+.+.++..||+++++.....+++.+||
T Consensus 62 ~g~~~~~~~------~~rIGyLPEERGLy~k~---tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LS 132 (300)
T COG4152 62 NGGPLSQEI------KNRIGYLPEERGLYPKM---TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELS 132 (300)
T ss_pred cCcchhhhh------hhhcccChhhhccCccC---cHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhh
Confidence 222211100 00111222211111211 1111 12455678889999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe-Ccccccc
Q 040300 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY-GKPGAYG 297 (605)
Q Consensus 219 GGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~-g~~~~~g 297 (605)
-|.+|++.+..|++++|+++|||||+|||||...+.+.+.|.+++++|.|||++||.++.++.+||++++|. |++..||
T Consensus 133 KGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G 212 (300)
T COG4152 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212 (300)
T ss_pred hhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 4444455
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=285.50 Aligned_cols=194 Identities=23% Similarity=0.324 Sum_probs=137.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceeeCCCChhhhhhhhccchhhh-
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP-----NLGRFNNPPDWQEILTYFRGSELQN- 154 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-----~~G~i~~~~~~~~~~~~~~g~~l~~- 154 (605)
+++++|+.. ..|.+++ .+.+||++||+|+||||||||+++|+|+++| +.|++.. .|.++..
T Consensus 9 ~v~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~-----------~g~~~~~~ 76 (258)
T PRK14241 9 DLNIYYGSF-HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL-----------DGEDLYGP 76 (258)
T ss_pred eEEEEECCE-eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEE-----------CCEecccc
Confidence 345566543 2455555 3579999999999999999999999999974 6898752 1211110
Q ss_pred -hHHHHHHHHHHHhhcccccccchh-hhhchhhh---h---cCchHHHHHHHHHHhhcCCc----hhhcccCCCCChHHH
Q 040300 155 -YFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ---V---LDQKDERDMKADLCTDLDLN----QVIDRNVGDLSGGEL 222 (605)
Q Consensus 155 -~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~---l~~~~~~~~~~~~l~~l~L~----~~~dr~v~~LSGGe~ 222 (605)
....... ...++.+|.....+. .+..++.. . ......++++.++++.+++. +.+++.+.+|||||+
T Consensus 77 ~~~~~~~~--~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 77 GVDPVAVR--RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred ccChHHHh--cceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 0000000 011122222111111 11111110 0 01122345678889999883 578899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 223 QRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 223 QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
|||+||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~ 221 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFFN 221 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999965 6899999999999999999999995
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=287.22 Aligned_cols=199 Identities=26% Similarity=0.344 Sum_probs=142.6
Q ss_pred eEEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCC---ceeeCCCChhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNL---GRFNNPPDWQEI 143 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~---G~i~~~~~~~~~ 143 (605)
+|+|.||.+ +|+.. ...+++++ .+.+||++||+|+||||||||+++|+|+++|+. |++..
T Consensus 5 ~l~i~~l~~--------~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i------- 69 (282)
T PRK13640 5 IVEFKHVSF--------TYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITV------- 69 (282)
T ss_pred eEEEEEEEE--------EcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEE-------
Confidence 577777655 45321 12344444 347999999999999999999999999999987 77742
Q ss_pred hhhhccchhhhhHHHHHHHHHHHhhcccccc-cchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhccc
Q 040300 144 LTYFRGSELQNYFTRILEDNLKAIIKPQYVD-HIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRN 213 (605)
Q Consensus 144 ~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~ 213 (605)
.|.++......... ....+.+|... .++ ..++.+. .......+++.++++.+||.+.+++.
T Consensus 70 ----~g~~~~~~~~~~~~--~~ig~v~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 140 (282)
T PRK13640 70 ----DGITLTAKTVWDIR--EKVGIVFQNPDNQFV---GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE 140 (282)
T ss_pred ----CCEECCcCCHHHHH--hheEEEEECHHHhhc---cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC
Confidence 22211110000000 01111122110 000 0111111 11123345688899999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+|||+++++. .||++++|+.+
T Consensus 141 ~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G 219 (282)
T PRK13640 141 PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDG 219 (282)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999765 899999999999995 79999999643
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=337.79 Aligned_cols=215 Identities=20% Similarity=0.267 Sum_probs=173.6
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeec
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~ 419 (605)
.+.|++ ...++++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. +..++|+|
T Consensus 935 sK~y~~~~k~aL~~lsl~I~~G-----ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~p 1009 (2272)
T TIGR01257 935 VKIFEPSGRPAVDRLNITFYEN-----QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCP 1009 (2272)
T ss_pred EEEecCCCceEEEeeEEEEcCC-----cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEe
Confidence 566742 234788999998888 78999999999999999999999999999875 22221 23599999
Q ss_pred CcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 420 QKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
|+.......||++++....+. ... ....+.++++.++|.+..++++.+|||||||||+||+||+.+|++|||||||
T Consensus 1010 Q~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPT 1089 (2272)
T TIGR01257 1010 QHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPT 1089 (2272)
T ss_pred cCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 997665678999987542111 111 1245678999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccccceecceEEEec
Q 040300 496 AYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRD 575 (605)
Q Consensus 496 ~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 575 (605)
+|||+.+++.++++|+++ + .|+|||++|||++++..+||||++|+++.. ...|++..+... |-.+..+++...
T Consensus 1090 SGLDp~sr~~l~~lL~~l-~-~g~TIIltTHdmdea~~laDrI~iL~~GkL--~~~Gs~~~Lk~~---~g~gy~l~~~~~ 1162 (2272)
T TIGR01257 1090 SGVDPYSRRSIWDLLLKY-R-SGRTIIMSTHHMDEADLLGDRIAIISQGRL--YCSGTPLFLKNC---FGTGFYLTLVRK 1162 (2272)
T ss_pred cCCCHHHHHHHHHHHHHH-h-CCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEecCHHHHHHh---cCCcEEEEEEec
Confidence 999999999999999998 4 489999999999999999999999986543 456888887653 333444455433
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=279.83 Aligned_cols=191 Identities=23% Similarity=0.356 Sum_probs=130.4
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.....+++++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|..+..+......
T Consensus 8 l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~~ 76 (229)
T cd03254 8 VNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI-----------DGIDIRDISRKSLR 76 (229)
T ss_pred EEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE-----------CCEeHHHcCHHHHh
Confidence 4456653223455555 45799999999999999999999999999999999852 12111110000000
Q ss_pred HHHHHhhcccccccchhhhhchhhhhcC---chHHHHH---------HHHHHhhc--CCchhhcccCCCCChHHHHHHHH
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDM---------KADLCTDL--DLNQVIDRNVGDLSGGELQRFAI 227 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~---------~~~~l~~l--~L~~~~dr~v~~LSGGe~QRvaI 227 (605)
...++.+|. +..+..++.+.+. ....... +.++++.+ +++..+++.+.+|||||+|||+|
T Consensus 77 --~~i~~~~q~----~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~l 150 (229)
T cd03254 77 --SMIGVVLQD----TFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAI 150 (229)
T ss_pred --hhEEEecCC----chhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHH
Confidence 001111121 1111111211110 0000111 23344444 55556677889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||+|||+++++.. ||++++|..+
T Consensus 151 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~g 213 (229)
T cd03254 151 ARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLSTIKN-ADKILVLDDG 213 (229)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHhh-CCEEEEEeCC
Confidence 9999999999999999999999999999999999864 8999999999999974 9999999653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=283.49 Aligned_cols=202 Identities=24% Similarity=0.307 Sum_probs=142.3
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceeeCCCChh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-----PNLGRFNNPPDWQ 141 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-----p~~G~i~~~~~~~ 141 (605)
..|++.|+ +++|+.. ..+++++ .+++||+++|+|+||||||||+++|+|+++ |+.|++..
T Consensus 12 ~~l~~~~l--------~~~~~~~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~----- 77 (260)
T PRK10744 12 SKIQVRNL--------NFYYGKF-HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL----- 77 (260)
T ss_pred ceEEEEEE--------EEEeCCe-EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE-----
Confidence 45666665 4456543 2455555 357999999999999999999999999986 47898742
Q ss_pred hhhhhhccchhhh--hHHHHHHHHHHHhhcccccccchhhhhchhh---hh---cCchHHHHHHHHHHhhcCCc----hh
Q 040300 142 EILTYFRGSELQN--YFTRILEDNLKAIIKPQYVDHIPKAVQGNVG---QV---LDQKDERDMKADLCTDLDLN----QV 209 (605)
Q Consensus 142 ~~~~~~~g~~l~~--~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~---~~---l~~~~~~~~~~~~l~~l~L~----~~ 209 (605)
.|..+.. ....... -...+.+|.....+..+..++. .. +......+++.++++.+++. +.
T Consensus 78 ------~g~~~~~~~~~~~~~~--~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 149 (260)
T PRK10744 78 ------DGENILTPKQDIALLR--AKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDK 149 (260)
T ss_pred ------CCEEccccccchHHHh--cceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Confidence 1211100 0000000 0111222221111111111111 00 11122345678899999973 56
Q ss_pred hcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 210 ~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
+++.+.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||++|||++++..+||++++|
T Consensus 150 ~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 150 LHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 8899999999999999999999999999999999999999999999999999965 789999999999999999999999
Q ss_pred eCc
Q 040300 290 YGK 292 (605)
Q Consensus 290 ~g~ 292 (605)
+.+
T Consensus 229 ~~G 231 (260)
T PRK10744 229 YLG 231 (260)
T ss_pred ECC
Confidence 753
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=286.39 Aligned_cols=203 Identities=20% Similarity=0.268 Sum_probs=140.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-----PNLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~ 142 (605)
+|++.||. ++|+.. ..+++++ .+++||++||+|+||||||||+++|+|+++ |+.|++..
T Consensus 21 ~l~~~~l~--------~~~~~~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~------ 85 (268)
T PRK14248 21 ILEVKDLS--------IYYGEK-RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILY------ 85 (268)
T ss_pred eEEEEEEE--------EEeCCc-eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEE------
Confidence 56666654 456532 2455555 357999999999999999999999999864 68998742
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhh---hc---CchHHHHHHHHHHhhcCCc----hhhcc
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQ---VL---DQKDERDMKADLCTDLDLN----QVIDR 212 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~---~l---~~~~~~~~~~~~l~~l~L~----~~~dr 212 (605)
.|.++..............++.+|.....+..+..++.. .. ........+.++++.+++. +.+++
T Consensus 86 -----~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 160 (268)
T PRK14248 86 -----EGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHS 160 (268)
T ss_pred -----CCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhc
Confidence 121111000000000001122222211111111111110 00 0112234567788888874 56789
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
++.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||++|||++++..+||++++|+.+
T Consensus 161 ~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G 239 (268)
T PRK14248 161 SALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNG 239 (268)
T ss_pred CcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999965 689999999999999999999999743
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=286.77 Aligned_cols=200 Identities=29% Similarity=0.390 Sum_probs=143.6
Q ss_pred ceEEEecCCcccCCCceEEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
.+|++.|+.+ +|+. ....+++++ .+.+||++||+|+||||||||+++|+|+++|+.|++..
T Consensus 6 ~~l~~~nl~~--------~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~--------- 68 (271)
T PRK13632 6 VMIKVENVSF--------SYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI--------- 68 (271)
T ss_pred eEEEEEeEEE--------EcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE---------
Confidence 3677777654 5532 122455555 35799999999999999999999999999999998742
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccc-cchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCC
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVD-HIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
.|..+......... ....+.+|... ..+ ..++.+. +.....+.++.++++.++|.+.+++.+.
T Consensus 69 --~g~~i~~~~~~~~~--~~i~~v~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 141 (271)
T PRK13632 69 --DGITISKENLKEIR--KKIGIIFQNPDNQFI---GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQ 141 (271)
T ss_pred --CCEecCcCCHHHHh--cceEEEEeCHHHhcC---cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcc
Confidence 12111100000000 00111111110 000 0111111 1112234567889999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ +.|||++|||++++. .||++++|..+
T Consensus 142 ~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G 218 (271)
T PRK13632 142 NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEG 218 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999766 589999999999986 79999999653
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-32 Score=324.83 Aligned_cols=328 Identities=17% Similarity=0.217 Sum_probs=218.3
Q ss_pred HHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCH
Q 040300 200 LCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276 (605)
Q Consensus 200 ~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl 276 (605)
.|..+||..+ ++|...+|||||.||+-||+.|-.+= =+|+|||||.||.++....+.+.|++|...|.|||||+||.
T Consensus 1370 ~l~~vGL~YLtL~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~ 1449 (1809)
T PRK00635 1370 FIDKVGLSYITLGQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSG 1449 (1809)
T ss_pred HHHhCCCCcccccCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3455788874 89999999999999999999998764 49999999999999999999999999999999999999999
Q ss_pred hHHHhhcCEEEEEeCcccccccc-ccchhhHHHHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCc
Q 040300 277 SVLDYLSDFICCLYGKPGAYGVV-TLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTM 355 (605)
Q Consensus 277 ~~l~~~~D~i~vl~g~~~~~g~~-~~~~~~r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 355 (605)
+.+. .||+|+-|--+.|.+|-. ....+..+..+. .. . . ++ ....+ .. .+ ...
T Consensus 1450 ~~i~-~AD~iidiGPgAG~~GG~iv~~G~~~~l~~~-----~~-~--~-------~~--~~~~~------~l-~l--~a~ 1502 (1809)
T PRK00635 1450 SLAE-HADHLIHLGPGSGPQGGYLLSTSALKQSQPD-----LH-N--T-------RS--SEETP------TL-SV--SLS 1502 (1809)
T ss_pred HHHH-hCCEEEEeCCCccCCCCEEEecCCHHHHhhh-----cc-c--c-------cc--cccCc------EE-EE--ecc
Confidence 8887 599999994334444421 112222221110 00 0 0 00 00000 00 11 111
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH----------cCCCCCeeeeecc-cc--------------
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA----------GLLKPDSVEDSDV-EI-------------- 410 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~----------Gl~~p~~G~i~~~-~~-------------- 410 (605)
...++++++++.-|. .++|.|.+|||||||++-.. |...-+.-...++ .+
T Consensus 1503 ~nNLk~v~v~iPlg~-----l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~ 1577 (1809)
T PRK00635 1503 IHTIQNLNVSAPLHS-----LVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDI 1577 (1809)
T ss_pred cccCCcceeeccCCc-----EEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhh
Confidence 224678888888884 79999999999999997443 2211111000000 00
Q ss_pred -----------C-cceeEeecCcCCCC------------------------------------C----------cCcHHH
Q 040300 411 -----------P-EFNVSYKPQKISPK------------------------------------F----------QSTVRH 432 (605)
Q Consensus 411 -----------~-~~~i~y~~q~~~~~------------------------------------~----------~~tv~~ 432 (605)
+ ...-+|.+-..++. | ..++.|
T Consensus 1578 fd~IR~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~d 1657 (1809)
T PRK00635 1578 APSLRNFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQ 1657 (1809)
T ss_pred HHHHHHHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHH
Confidence 0 00001111100000 0 001111
Q ss_pred HHHhhhcc---CCCC-H--HHHHHHHhhcCCchh-hccCcCcCChhHHHHHHHHHHHccC---CCEEEEecCCCCCCHHH
Q 040300 433 LLHQKIRD---SYTH-P--QFVSDVMKPLLIEQL-MDQEVVNLSGGELQRVALCLCLGKP---ADIYLIDEPSAYLDSEQ 502 (605)
Q Consensus 433 ~~~~~~~~---~~~~-~--~~~~~~l~~l~l~~~-~~~~~~~LSGGe~QRvaiA~aL~~~---p~lllLDEPt~~LD~~~ 502 (605)
.+.+.+.. .|.. + ...-+.|..+||..+ +.++..+|||||.||+-||..|..+ +.+|||||||.||++..
T Consensus 1658 vL~mtv~ea~~~F~~~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d 1737 (1809)
T PRK00635 1658 LLQTPIEEVAETFPFLKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQ 1737 (1809)
T ss_pred HhcCCHHHHHHHhhccHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHH
Confidence 11111000 0111 1 122346777788754 6789999999999999999999875 78999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe--CCc--ceeeecCChhhhhccc
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE--GQP--SVDCVANAPQSLLTGM 561 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~--g~~--~~~~~~~~p~~~~~~~ 561 (605)
...++++|++|.. .|.|||+|+||++.+.. ||.|+-|- |+. +...+.|+|+++....
T Consensus 1738 ~~~Ll~~l~~L~~-~g~tvivieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1738 KSALLVQLRTLVS-LGHSVIYIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHHHHHHHHHHHh-cCCeEEEEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 9999999999864 69999999999999987 99999984 221 3456889999998753
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=285.87 Aligned_cols=202 Identities=26% Similarity=0.311 Sum_probs=144.0
Q ss_pred eEEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+|++.|+.+ +|+.. ...+++++ .+++||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 7 ~l~i~~l~~--------~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~---------- 68 (269)
T PRK13648 7 IIVFKNVSF--------QYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFY---------- 68 (269)
T ss_pred eEEEEEEEE--------EcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE----------
Confidence 577776554 55432 12455555 35799999999999999999999999999999998852
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccc-cchhh-hhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCCh
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVD-HIPKA-VQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~~~-~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSG 219 (605)
.|..+.......... ..++.+|... .++.. +...+. .. .......+++.++++.+++.+..++.+.+|||
T Consensus 69 -~g~~~~~~~~~~~~~--~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 145 (269)
T PRK13648 69 -NNQAITDDNFEKLRK--HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSG 145 (269)
T ss_pred -CCEECCcCCHHHHHh--heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCH
Confidence 222211110000000 1111222110 01100 000000 00 11122345678899999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||+||++||+||+.+|++|||||||++||+.++..+.+.|+++.++ |.|||+|||+++++.. ||+|++|+.+
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECC
Confidence 9999999999999999999999999999999999999999999764 8999999999999986 9999999653
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=283.76 Aligned_cols=190 Identities=22% Similarity=0.371 Sum_probs=137.9
Q ss_pred eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHH-HHHHHHHhhc
Q 040300 92 FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI-LEDNLKAIIK 169 (605)
Q Consensus 92 f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~-~~~~~~~~~~ 169 (605)
..+++++ .+.+||+++|+|+||||||||+++|+|+++|++|++.. .|..+....... ....-..++.
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~-----------~g~~~~~~~~~~~~~~~~~i~~v 94 (268)
T PRK10419 26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSW-----------RGEPLAKLNRAQRKAFRRDIQMV 94 (268)
T ss_pred eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------CCEeccccChhHHHHHHhcEEEE
Confidence 3456666 45899999999999999999999999999999999852 122111100000 0000011122
Q ss_pred ccccc-cc-hh-hhhchhh----hh--cCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 170 PQYVD-HI-PK-AVQGNVG----QV--LDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 170 ~q~~~-~~-~~-~~~~~v~----~~--l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
+|... .+ +. .+...+. .. +.......++.++++.+|+. ..+++.+.+|||||+||++||+||+.+|++||
T Consensus 95 ~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lll 174 (268)
T PRK10419 95 FQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174 (268)
T ss_pred EcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEE
Confidence 22110 00 00 0000110 00 11222345688999999997 68999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||++||+.++..+.++|+++.++ +.|||+||||++++..+||++++|+++
T Consensus 175 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G 228 (268)
T PRK10419 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNG 228 (268)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999765 899999999999999999999999753
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=314.53 Aligned_cols=194 Identities=21% Similarity=0.294 Sum_probs=152.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
+++|++. ..+++++|++.+| |++||+||||||||||+|+|+|+++|++|+|.. .....++|++|.... +..
T Consensus 8 s~~~g~~-~~l~~vs~~i~~G-----e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~--~~~~~i~~~~q~~~~-~~~ 78 (638)
T PRK10636 8 QIRRGVR-VLLDNATATINPG-----QKVGLVGKNGCGKSTLLALLKNEISADGGSYTF--PGNWQLAWVNQETPA-LPQ 78 (638)
T ss_pred EEEeCCc-eeecCcEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe--cCCCEEEEEecCCCC-CCC
Confidence 7778753 4689999999888 789999999999999999999999999999741 123358999986322 223
Q ss_pred cHHHHHHhh-------------------------hc------cCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHH
Q 040300 429 TVRHLLHQK-------------------------IR------DSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRV 476 (605)
Q Consensus 429 tv~~~~~~~-------------------------~~------~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRv 476 (605)
++.+++... .. ..+.....+.++++.+|+. ...++++.+|||||||||
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv 158 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRL 158 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHH
Confidence 433322100 00 0011124567889999997 578999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 477 ALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 477 aiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
+||+||+.+|+||||||||||||+.++..+.+.|+++ +.|||+||||++++..+|||+++++++... ...|+...
T Consensus 159 ~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~~G~i~-~~~g~~~~ 233 (638)
T PRK10636 159 NLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIEQQSLF-EYTGNYSS 233 (638)
T ss_pred HHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEeCCEEE-EecCCHHH
Confidence 9999999999999999999999999999998888875 579999999999999999999999865432 23454443
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=280.90 Aligned_cols=193 Identities=27% Similarity=0.408 Sum_probs=141.0
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+.. .+.+++ .+.+||++||+|+||||||||+++|+|+++|+.|++.. .|..+......
T Consensus 5 ~l~~~~~~~--~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i-----------~g~~~~~~~~~-- 69 (235)
T cd03299 5 NLSKDWKEF--KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILL-----------NGKDITNLPPE-- 69 (235)
T ss_pred eEEEEeCCc--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE-----------CCEEcCcCChh--
Confidence 345566542 355555 35799999999999999999999999999999998742 12111110000
Q ss_pred HHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
....++.+|.....+. .+..++.. . .......+.+.++++.++|.+.+++.+.+|||||+||++||+||+.+
T Consensus 70 --~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 147 (235)
T cd03299 70 --KRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVN 147 (235)
T ss_pred --HcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcC
Confidence 0011112221111110 00011100 0 01122345678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|++++|||||++||+.++..+.++|+++.++ +.|||++||+++++..+||++++|..
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~ 205 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLN 205 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999998764 89999999999999999999999964
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=276.40 Aligned_cols=198 Identities=25% Similarity=0.348 Sum_probs=139.6
Q ss_pred CceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHH
Q 040300 82 DTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFT 157 (605)
Q Consensus 82 ~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~ 157 (605)
+++++|+.. ...+++++ .+.+|++++|+|+||||||||+++|+|.++|+.|++.. .|..+.....
T Consensus 6 ~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~ 74 (220)
T TIGR02982 6 NLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKV-----------LGQELYGASE 74 (220)
T ss_pred EEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----------CCEEhHhcCH
Confidence 345555431 22455555 35799999999999999999999999999999998852 1221111000
Q ss_pred HHH-HHHHHHhhcccccccchh-hhhchhh---h---hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHH
Q 040300 158 RIL-EDNLKAIIKPQYVDHIPK-AVQGNVG---Q---VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 158 ~~~-~~~~~~~~~~q~~~~~~~-~~~~~v~---~---~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~ 229 (605)
... ...-...+.+|.....+. .+..++. . .+...+...++.++++.+||.+..++.+.+|||||+||++||+
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 75 KELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHH
Confidence 000 000011112222111110 0000000 0 0112233457889999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 230 VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 230 aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+.+|+++||||||++||+.++..+.++|+++.+ .+.|||++|||++.. .+||+|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~ 216 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMED 216 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEEC
Confidence 99999999999999999999999999999999986 489999999999865 68999999974
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=283.67 Aligned_cols=196 Identities=23% Similarity=0.303 Sum_probs=140.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-----PNLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~ 142 (605)
+|++.|+. ++|+.. ..|++++ .+.+||+++|+|+||||||||+++|+|+++ |+.|++..
T Consensus 13 ~l~i~nl~--------~~~~~~-~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~------ 77 (269)
T PRK14259 13 IISLQNVT--------ISYGTF-EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLF------ 77 (269)
T ss_pred eEEEEeEE--------EEECCE-EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE------
Confidence 57777654 456542 2455555 358999999999999999999999999987 58898752
Q ss_pred hhhhhccchhhh--hHHHHHHHHHHHhhcccccccchhhhhchhhhhcC--------chHHHHHHHHHHhhcCC----ch
Q 040300 143 ILTYFRGSELQN--YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD--------QKDERDMKADLCTDLDL----NQ 208 (605)
Q Consensus 143 ~~~~~~g~~l~~--~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~--------~~~~~~~~~~~l~~l~L----~~ 208 (605)
.|.++.. ....... ...++.+|.....+. ++.+.+. .....+++.++++.+++ .+
T Consensus 78 -----~g~~i~~~~~~~~~~~--~~i~~v~q~~~l~~~----tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~ 146 (269)
T PRK14259 78 -----DGTDLYDPRVDPVEVR--RRIGMVFQQPNPFPK----SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD 146 (269)
T ss_pred -----CCEEcccccCCHHHHh--hceEEEccCCccchh----hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhh
Confidence 2221110 0000000 011222222111111 2221110 01223456777888876 45
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
.+++++.+|||||+||++||+||+.+|++|||||||++||+..+..+.++|+++.+ +.|||+||||++++..+||++++
T Consensus 147 ~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~ 225 (269)
T PRK14259 147 KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTAF 225 (269)
T ss_pred hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEE
Confidence 68999999999999999999999999999999999999999999999999999965 79999999999999999999999
Q ss_pred EeC
Q 040300 289 LYG 291 (605)
Q Consensus 289 l~g 291 (605)
|+.
T Consensus 226 l~~ 228 (269)
T PRK14259 226 FNA 228 (269)
T ss_pred Eec
Confidence 974
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=297.49 Aligned_cols=206 Identities=22% Similarity=0.263 Sum_probs=170.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc--------CcceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI--------PEFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~--------~~~~i~y~ 418 (605)
+.+|+.. +++++++|++.+| |+++|+|.||||||||+|+|+|.++|++|++. +... ....|+.+
T Consensus 15 ~K~FggV-~AL~~v~l~v~~G-----EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V 88 (500)
T COG1129 15 SKSFGGV-KALDGVSLTVRPG-----EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATV 88 (500)
T ss_pred eEEcCCc-eeeccceeEEeCc-----eEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEE
Confidence 7888864 5899999999998 78999999999999999999999999999985 2211 12459999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc----cCCCC----HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 419 PQKISPKFQSTVRHLLHQKIR----DSYTH----PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~----~~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
.|+.+...++||.+|++.... ..+.+ ...+.++|+.+++....+.++.+||+||||.|+|||||..+++|+|
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllI 168 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLI 168 (500)
T ss_pred eechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998889999998854211 11122 2457789999998645899999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCccee----eecCChhhhhccc
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVD----CVANAPQSLLTGM 561 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~----~~~~~p~~~~~~~ 561 (605)
||||||+|+......++++|++|. ++|.++|+|||.++++..+||||.||.++..+. ...-+.+++..-|
T Consensus 169 lDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~M 242 (500)
T COG1129 169 LDEPTAALTVKETERLFDLIRRLK-AQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLM 242 (500)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHHh
Confidence 999999999999999999999985 569999999999999999999999998654321 1233455555544
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=280.82 Aligned_cols=203 Identities=22% Similarity=0.294 Sum_probs=139.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcC---CCC--CCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGK---LKP--NLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~---l~p--~~G~i~~~~~~~~ 142 (605)
+|++.|+ +++|+.. ..+++++ .+.+||++||+|+||||||||+++|+|+ ++| +.|++..
T Consensus 3 ~l~~~~~--------~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~------ 67 (250)
T PRK14245 3 KIDARDV--------NFWYGDF-HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRI------ 67 (250)
T ss_pred EEEEEEE--------EEEECCE-eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEE------
Confidence 5666665 4456542 2455555 3579999999999999999999999997 455 4898742
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc------CchHHHHHHHHHHhhcCCc----hhhcc
Q 040300 143 ILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL------DQKDERDMKADLCTDLDLN----QVIDR 212 (605)
Q Consensus 143 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l------~~~~~~~~~~~~l~~l~L~----~~~dr 212 (605)
.|..+...............+.+|.....+..+..++...+ .......++.++++.+++. +.+++
T Consensus 68 -----~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (250)
T PRK14245 68 -----DGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKE 142 (250)
T ss_pred -----CCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhC
Confidence 22211110000000000112222221111111111111000 0112345678899999985 45789
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.+.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+.+
T Consensus 143 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14245 143 SAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHNMQQAARVSDKTAFFYMG 221 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999954 799999999999999999999999743
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=286.00 Aligned_cols=199 Identities=23% Similarity=0.302 Sum_probs=143.7
Q ss_pred eEEEecCCcccCCCceEEeCCC--ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN--TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~--~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
+|++.|+. ++|+.. ...+++++ .+.+||+++|+|+||||||||+++|+|+++|+.|++..
T Consensus 4 ~l~~~~l~--------~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~--------- 66 (277)
T PRK13642 4 ILEVENLV--------FKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKI--------- 66 (277)
T ss_pred eEEEEEEE--------EEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE---------
Confidence 56776654 455421 12455555 45799999999999999999999999999999999842
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccc-cchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCC
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVD-HIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
.|..+........ .....+.+|... .++ ..++.+. .......+++.++++.+||.++.++++.
T Consensus 67 --~g~~i~~~~~~~~--~~~i~~v~q~~~~~~~---~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (277)
T PRK13642 67 --DGELLTAENVWNL--RRKIGMVFQNPDNQFV---GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPA 139 (277)
T ss_pred --CCEECCcCCHHHH--hcceEEEEECHHHhhc---cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc
Confidence 1211110000000 001111122110 000 0111111 1112234567889999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+||||++++. .||+|++|+.+
T Consensus 140 ~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G 216 (277)
T PRK13642 140 RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAG 216 (277)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999875 899999999999997 59999999743
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=281.50 Aligned_cols=197 Identities=22% Similarity=0.292 Sum_probs=137.5
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceeeCCCChhhhhhhhccchhhhhH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP-----NLGRFNNPPDWQEILTYFRGSELQNYF 156 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-----~~G~i~~~~~~~~~~~~~~g~~l~~~~ 156 (605)
++++|+.. ..+++++ .+.+||+++|+|+||||||||+++|+|+++| +.|++.. .|..+....
T Consensus 10 l~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~-----------~g~~i~~~~ 77 (251)
T PRK14270 10 LNLWYGEK-QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLL-----------DGKNIYDKD 77 (251)
T ss_pred eEEEECCe-eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEE-----------CCEeccccc
Confidence 44566532 2455555 3579999999999999999999999999875 7898742 222111000
Q ss_pred HHHHHHHHHHhhcccccccchhhhhchhh---hhc---CchHHHHHHHHHHhhcCCc----hhhcccCCCCChHHHHHHH
Q 040300 157 TRILEDNLKAIIKPQYVDHIPKAVQGNVG---QVL---DQKDERDMKADLCTDLDLN----QVIDRNVGDLSGGELQRFA 226 (605)
Q Consensus 157 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~---~~l---~~~~~~~~~~~~l~~l~L~----~~~dr~v~~LSGGe~QRva 226 (605)
.......-..++.+|.....+..+..++. ... .......++.++++.+++. +.+++.+.+|||||+||++
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred ccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 00000000112222222111111111111 000 1112245677889999873 4678999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 227 IA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||+||+.+|++|||||||++||+.++..+.++|+++.+ +.|||+||||++++..+||++++|+++
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G 222 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMG 222 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999999999999999876 689999999999999999999999753
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=297.70 Aligned_cols=334 Identities=25% Similarity=0.318 Sum_probs=217.9
Q ss_pred HhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHh
Q 040300 201 CTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLS 277 (605)
Q Consensus 201 l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~ 277 (605)
|-.+||..+ ++|...+|||||.||+.||..+-..= =+|+||||+.||-++.-.++.+.|+.|+..|.||||||||.+
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed 544 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED 544 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 334688764 89999999999999999999998764 489999999999999999999999999999999999999988
Q ss_pred HHHhhcCEEEEEeCcccccccc-ccchhhHH-------HHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhhee
Q 040300 278 VLDYLSDFICCLYGKPGAYGVV-TLPFSVRE-------GINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYAR 349 (605)
Q Consensus 278 ~l~~~~D~i~vl~g~~~~~g~~-~~~~~~r~-------~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 349 (605)
.+. .||+|+-+--+.|.+|-. ....++.+ ...+|+.|....+ ++..... . ..... .
T Consensus 545 ti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~YLsg~~~i~------------vP~~rr~-~-~~~~L-~ 608 (935)
T COG0178 545 TIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYLSGKKTIE------------VPKKRRA-P-NGKWL-E 608 (935)
T ss_pred HHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHhhcCCcccC------------CcccccC-C-CCCeE-E
Confidence 776 699999995444555422 11122221 1123444321110 0000000 0 00000 1
Q ss_pred eecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHH-----HHHHcCCCC-----Ce-eeeecc-ccCcceeEe
Q 040300 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFI-----RMLAGLLKP-----DS-VEDSDV-EIPEFNVSY 417 (605)
Q Consensus 350 ~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLl-----k~L~Gl~~p-----~~-G~i~~~-~~~~~~i~y 417 (605)
+.-.. ...++|+++++.-|. +++|.|-+|||||||+ ++++..+.. .. -++.+. .+ -++-+
T Consensus 609 l~gA~-~nNLkni~v~iPLg~-----~t~VTGVSGSGKSTLIn~tL~~a~~~~l~~~~~~p~~~~~i~G~e~i--dkvI~ 680 (935)
T COG0178 609 LKGAR-RNNLKNIDVEIPLGV-----FTCVTGVSGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEGLEHI--DKVID 680 (935)
T ss_pred Eeccc-ccCcccceeeccccc-----EEEEEecCCCCHHHhHHHHHHHHHHHHhccCCCCCCCcceeechhhc--CeEEE
Confidence 11111 124778888888884 6999999999999998 333333222 11 011100 00 01122
Q ss_pred ecCcCC-------CC-C---cCcHHHHHH---------------------------------------------------
Q 040300 418 KPQKIS-------PK-F---QSTVRHLLH--------------------------------------------------- 435 (605)
Q Consensus 418 ~~q~~~-------~~-~---~~tv~~~~~--------------------------------------------------- 435 (605)
+.|.+- +. + ...++++|.
T Consensus 681 IdQsPIGRTpRSNPATYtg~Fd~IR~lFA~tpeAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~ 760 (935)
T COG0178 681 IDQSPIGRTPRSNPATYTGVFDDIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCH 760 (935)
T ss_pred ecCCCCCCCCCCCccchhcchHHHHHHHhcChHHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcC
Confidence 222210 00 0 012233321
Q ss_pred -----------------------hhhcc---CCCC-H--HHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHHccC
Q 040300 436 -----------------------QKIRD---SYTH-P--QFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 436 -----------------------~~~~~---~~~~-~--~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
+.+.. -|.+ + ...-+.|..+||.. -+-++..+|||||.|||-||.-|.+.
T Consensus 761 GkRYn~EtLev~ykGK~IadVL~MTveEA~~FF~~~p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~ 840 (935)
T COG0178 761 GKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKR 840 (935)
T ss_pred CcccccceEEEEECCccHHHHHhccHHHHHHHHhcchHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhc
Confidence 00000 0000 0 11223445566663 35789999999999999999999887
Q ss_pred C---CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe--CC--cceeeecCChhhhh
Q 040300 486 A---DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE--GQ--PSVDCVANAPQSLL 558 (605)
Q Consensus 486 p---~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~--g~--~~~~~~~~~p~~~~ 558 (605)
. .+|||||||.||-.+....++++|.+|.. .|-|||+|+|+++.+. .||.|+-+- |+ -+...+.|+|+++.
T Consensus 841 ~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEHNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva 918 (935)
T COG0178 841 STGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVA 918 (935)
T ss_pred cCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHH
Confidence 7 89999999999999999999999999975 5999999999999986 599999983 22 13456889999997
Q ss_pred cc
Q 040300 559 TG 560 (605)
Q Consensus 559 ~~ 560 (605)
..
T Consensus 919 ~~ 920 (935)
T COG0178 919 KV 920 (935)
T ss_pred hC
Confidence 63
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=279.98 Aligned_cols=198 Identities=19% Similarity=0.237 Sum_probs=152.9
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
.+.|++. ...+++++|++.+| |+++|+|+||||||||+++|+|+++|++|++. +..+. ...++|+
T Consensus 26 ~~~~~~~~~~il~~isl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v 100 (257)
T cd03288 26 CVRYENNLKPVLKHVKAYIKPG-----QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSII 100 (257)
T ss_pred EEEeCCCCCcceeEEEEEEcCC-----CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEE
Confidence 6677642 23688999999888 78999999999999999999999999999875 22211 2358999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHH---------Hhhc--CCchhhccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDV---------MKPL--LIEQLMDQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~---------l~~l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
+|+... +..|+++++... ... ......++ ++.+ +++...+..+.+|||||+||++|||||+++|+
T Consensus 101 ~q~~~l-~~~tv~~nl~~~--~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 101 LQDPIL-FSGSIRFNLDPE--CKC-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred CCCCcc-cccHHHHhcCcC--CCC-CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 998753 456888776321 111 11122233 3333 44555566778999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||++||+.++..+.++|+++ . .+.|+|++||+++.+.. |||+++|+++.. ...++++++.+.
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~~-~-~~~tiii~sh~~~~~~~-~dri~~l~~G~i--~~~g~~~~~~~~ 244 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMTA-F-ADRTVVTIAHRVSTILD-ADLVLVLSRGIL--VECDTPENLLAQ 244 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHh-c-CCCEEEEEecChHHHHh-CCEEEEEECCEE--EEeCCHHHHHhc
Confidence 99999999999999999999999986 3 38999999999999986 999999986543 345777777654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=277.17 Aligned_cols=174 Identities=26% Similarity=0.377 Sum_probs=132.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhccccccc---ch
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDH---IP 177 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~---~~ 177 (605)
++||++||+|+||||||||+++|+|+++|+.|++... |.++... ....++.+|.... .+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~-----------g~~~~~~-------~~~i~~v~q~~~~~~~~~ 65 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVA-----------GASPGKG-------WRHIGYVPQRHEFAWDFP 65 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC-----------CccchHh-------hCcEEEecccccccCCCC
Confidence 6899999999999999999999999999999998522 1111000 0001111111000 00
Q ss_pred hhhhchhhh-------hc--CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 040300 178 KAVQGNVGQ-------VL--DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248 (605)
Q Consensus 178 ~~~~~~v~~-------~l--~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD 248 (605)
..+..++.. .+ .......++.++++.+++++..++.+.+|||||+||++||+||+.+|+++||||||++||
T Consensus 66 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD 145 (223)
T TIGR03771 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145 (223)
T ss_pred ccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 000011100 00 112234568889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 249 VKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 249 ~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.++..+.++|+++.+++.|||++|||++++..+||++++++|+
T Consensus 146 ~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~G~ 189 (223)
T TIGR03771 146 MPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLNGR 189 (223)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEECCE
Confidence 99999999999999877999999999999999999999999543
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=281.53 Aligned_cols=196 Identities=23% Similarity=0.252 Sum_probs=139.5
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceeeCCCChhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLK-----PNLGRFNNPPDWQE 142 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~ 142 (605)
+|++.|+ +++|+.. ..+.+++ .+.+||+++|+|+||||||||+++|+|+++ |+.|++..
T Consensus 4 ~l~~~~l--------~~~~~~~-~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i------ 68 (251)
T PRK14251 4 IISAKDV--------HLSYGNY-EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKF------ 68 (251)
T ss_pred eEEEEee--------EEEECCe-eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEE------
Confidence 5666665 4566542 3455555 357999999999999999999999999997 47898742
Q ss_pred hhhhhccchhhh--hHHHHHHHHHHHhhcccccccchhhhhchhhhhc----------CchHHHHHHHHHHhhcCCc---
Q 040300 143 ILTYFRGSELQN--YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL----------DQKDERDMKADLCTDLDLN--- 207 (605)
Q Consensus 143 ~~~~~~g~~l~~--~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l----------~~~~~~~~~~~~l~~l~L~--- 207 (605)
.|..+.. ...... ....++.+|.....+ .++.+.+ ......+++.++++.+++.
T Consensus 69 -----~g~~~~~~~~~~~~~--~~~i~~~~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 137 (251)
T PRK14251 69 -----EGQNIYGSKMDLVEL--RKEVGMVFQQPTPFP----FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET 137 (251)
T ss_pred -----CCEEcccccchHHHh--hccEEEEecCCccCC----CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch
Confidence 1111100 000000 000111122111111 1111111 0111234577888999984
Q ss_pred -hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEE
Q 040300 208 -QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFI 286 (605)
Q Consensus 208 -~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i 286 (605)
..+++.+.+|||||+||++||+||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||+||||++++..+||+|
T Consensus 138 ~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i 216 (251)
T PRK14251 138 KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISDQT 216 (251)
T ss_pred HHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEE
Confidence 567899999999999999999999999999999999999999999999999999865 799999999999999999999
Q ss_pred EEEeC
Q 040300 287 CCLYG 291 (605)
Q Consensus 287 ~vl~g 291 (605)
++|+.
T Consensus 217 ~~l~~ 221 (251)
T PRK14251 217 AFLMN 221 (251)
T ss_pred EEEEC
Confidence 99964
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=264.89 Aligned_cols=198 Identities=29% Similarity=0.439 Sum_probs=156.8
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|+|.|+++ +||.. ..+++++ .+.+|.+++|+|||||||||||.+++.++++++|++. +
T Consensus 1 MI~i~nv~K--------~y~~~-~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~-----------i 60 (252)
T COG4604 1 MITIENVSK--------SYGTK-VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT-----------I 60 (252)
T ss_pred CeeehhhhH--------hhCCE-EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEE-----------E
Confidence 466666555 66654 4566666 3568999999999999999999999999999999984 4
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc-----------CchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL-----------DQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l-----------~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|.++..+..+.+.+.+...- |.-.... .-+|++++ ...+++..+.++++.|+|+++.||+..+
T Consensus 61 ~g~~~~~~~s~~LAk~lSILk--Q~N~i~~---rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~ 135 (252)
T COG4604 61 DGLELTSTPSKELAKKLSILK--QENHINS---RLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDE 135 (252)
T ss_pred eeeecccCChHHHHHHHHHHH--hhchhhh---eeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHh
Confidence 555655555554444443321 1100000 11233321 1245677899999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||||||||+-||++++++.|.++||||.|+||.+....+++.+++++++ |+||++|=||.+++..++|+|+-|..
T Consensus 136 LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~ 211 (252)
T COG4604 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKN 211 (252)
T ss_pred cccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecC
Confidence 9999999999999999999999999999999999999999999999986 99999999999999999999999954
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=317.46 Aligned_cols=199 Identities=19% Similarity=0.296 Sum_probs=162.4
Q ss_pred hhheeeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cce
Q 040300 345 ETYARYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFN 414 (605)
Q Consensus 345 ~~~~~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~ 414 (605)
+++ +|+|++ ....+++++|++.+| |.++|+|+||||||||+|+|+|+++|++|++. +.++. +..
T Consensus 455 ~nv-sf~Y~~~~~~vL~~isl~i~~G-----e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 455 DRV-TFRYRPDGPLILDDVSLQIEPG-----EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred EEE-EEEcCCCCccceeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 344 889963 335789999999988 68999999999999999999999999999985 22222 235
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHc
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~ 483 (605)
++|+||++. .|..|+++|+..... .+.+...++++..++.+..+ ....+||||||||++|||||+
T Consensus 529 i~~v~Q~~~-lf~gTI~eNi~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 529 LGVVLQNGR-LMSGSIFENIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred cEEEccCCc-cCcccHHHHHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 999999975 478899999864321 34455677777777765433 234679999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|++||||||||+||+++...+.+.|+++ ++|+|+|||++..+.. ||||++|+++.. ...|+++++...
T Consensus 605 ~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~-~D~Iivl~~G~i--v~~G~~~~Ll~~ 674 (686)
T TIGR03797 605 RKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRN-ADRIYVLDAGRV--VQQGTYDELMAR 674 (686)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHc-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999999999999875 5799999999998865 999999997554 456888888764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=313.00 Aligned_cols=201 Identities=21% Similarity=0.350 Sum_probs=161.6
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+|+|++. ...+++++|++.+| |.++|+|+||||||||+++|+|+++|++|++. +.+.. ...++|+
T Consensus 348 sf~y~~~~~~il~~i~l~i~~G-----~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v 422 (582)
T PRK11176 348 TFTYPGKEVPALRNINFKIPAG-----KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALV 422 (582)
T ss_pred EEecCCCCCccccCceEEeCCC-----CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEE
Confidence 8889753 34789999999988 68999999999999999999999999999985 22222 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||++. .|+.|+++|+...... ..+.+...++++..++.++.+ ..-.+||||||||++|||||.++|+
T Consensus 423 ~Q~~~-lf~~Ti~~Ni~~~~~~-~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ 500 (582)
T PRK11176 423 SQNVH-LFNDTIANNIAYARTE-QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_pred ccCce-eecchHHHHHhcCCCC-CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 99965 4788999998643221 123455667777777654322 2235699999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+|||||||++||+++...+.+.|.++. .++|+|+|||++..+. .||||++++++.. ...|+++++....
T Consensus 501 ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i--~e~g~~~~l~~~~ 569 (582)
T PRK11176 501 ILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLSTIE-KADEILVVEDGEI--VERGTHAELLAQN 569 (582)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEE--EEeCCHHHHHhCC
Confidence 999999999999999999999999873 3799999999998876 5999999997554 3568888887653
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=275.63 Aligned_cols=190 Identities=23% Similarity=0.319 Sum_probs=133.9
Q ss_pred ceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 83 TTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 83 ~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
++++|+.. ...+.+++ .+.+|++++|+|+||||||||+++|+|+++|+.|++.. .|..+..+.....
T Consensus 8 l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-----------~g~~~~~~~~~~~ 76 (221)
T cd03244 8 VSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILI-----------DGVDISKIGLHDL 76 (221)
T ss_pred EEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEE-----------CCEEhHhCCHHHH
Confidence 45566432 23455555 45799999999999999999999999999999999852 2222221110000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCc--hHHHHHHHHHHhhcCCchhh-----------cccCCCCChHHHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQ--KDERDMKADLCTDLDLNQVI-----------DRNVGDLSGGELQRFAI 227 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~--~~~~~~~~~~l~~l~L~~~~-----------dr~v~~LSGGe~QRvaI 227 (605)
. -..++.+|.. ..+..++.+.+.. .....++.++++.+++.+.. ++.+.+|||||+||++|
T Consensus 77 ~--~~i~~~~q~~----~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~l 150 (221)
T cd03244 77 R--SRISIIPQDP----VLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCL 150 (221)
T ss_pred h--hhEEEECCCC----ccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHH
Confidence 0 0112222221 1111223322210 01123445556666665443 57899999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|+||+.+|+++||||||++||+.++..+.++|+++.+ +.|||++|||++++.. ||++++|.+
T Consensus 151 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~ 212 (221)
T cd03244 151 ARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID-SDRILVLDK 212 (221)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh-CCEEEEEEC
Confidence 9999999999999999999999999999999999865 6899999999999976 999999964
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=281.62 Aligned_cols=201 Identities=23% Similarity=0.324 Sum_probs=143.2
Q ss_pred CcceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCC----CCceeeCCCCh
Q 040300 66 PFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKP----NLGRFNNPPDW 140 (605)
Q Consensus 66 p~~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p----~~G~i~~~~~~ 140 (605)
|+ .|++.|+.+ +|+ + ..+.+++ .+.+||+++|+|+||||||||+++|+|+++| +.|++..
T Consensus 2 ~~-~l~~~~l~~--------~~~-~-~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~---- 66 (254)
T PRK10418 2 PQ-QIELRNIAL--------QAA-Q-PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLL---- 66 (254)
T ss_pred Cc-EEEEeCeEE--------Eec-c-ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEE----
Confidence 66 677777655 442 1 2344444 3479999999999999999999999999999 8998742
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHHhhcccccc-cc-hh-hhhchhhh---hcCchHHHHHHHHHHhhcCCch---hhc
Q 040300 141 QEILTYFRGSELQNYFTRILEDNLKAIIKPQYVD-HI-PK-AVQGNVGQ---VLDQKDERDMKADLCTDLDLNQ---VID 211 (605)
Q Consensus 141 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~-~~-~~-~~~~~v~~---~l~~~~~~~~~~~~l~~l~L~~---~~d 211 (605)
.|..+... ... ....++.+|... .. +. .+...+.. ........+++.++++.++|.+ .++
T Consensus 67 -------~g~~i~~~--~~~--~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 135 (254)
T PRK10418 67 -------DGKPVAPC--ALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLK 135 (254)
T ss_pred -------CCeecccc--ccc--cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhh
Confidence 11111100 000 000111122110 00 00 00001111 0111123356888999999986 679
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+.+.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|+++.++ |.|||+|||+++++..+||++++|.
T Consensus 136 ~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~ 215 (254)
T PRK10418 136 LYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMS 215 (254)
T ss_pred cCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999764 8999999999999999999999997
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
.+
T Consensus 216 ~G 217 (254)
T PRK10418 216 HG 217 (254)
T ss_pred CC
Confidence 43
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 605 | ||||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 0.0 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-156 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-156 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-133 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-120 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 8e-17 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-15 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-15 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-15 | ||
| 1g29_1 | 372 | Malk Length = 372 | 7e-15 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-14 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-13 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 4e-13 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 5e-13 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-10 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-10 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 1e-08 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-08 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-08 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-08 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-04 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-08 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-04 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-08 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-04 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 8e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-07 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 8e-08 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 4e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 5e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-04 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 5e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 5e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 8e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 9e-04 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 8e-08 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-07 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-07 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-07 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-07 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 6e-04 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 3e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-05 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-07 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 5e-07 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 7e-07 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 8e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 7e-07 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 8e-07 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 8e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-06 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-06 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-05 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-06 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 8e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-06 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-06 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-06 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-06 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 4e-06 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-05 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-05 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-05 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 2e-05 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-05 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 3e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 3e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-05 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-05 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 4e-05 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 5e-05 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 5e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 5e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 8e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 1e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-04 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-04 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-04 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-04 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 3e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-04 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 7e-04 |
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 605 | |||
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 0.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 0.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 0.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 0.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-24 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-13 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-06 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-22 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 8e-21 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-13 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-20 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-14 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-05 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 9e-20 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-18 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-17 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-04 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-16 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-07 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-15 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 6e-14 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-15 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 6e-14 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-15 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 8e-15 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 8e-15 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-06 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 9e-15 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 6e-09 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 4e-14 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 3e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 5e-14 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 3e-06 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-13 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 6e-06 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 7e-12 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-09 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-11 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 9e-05 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 4e-11 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-08 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 5e-10 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-05 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 5e-10 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-05 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 5e-10 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 4e-08 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 6e-09 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 1e-04 | |
| 1xer_A | 103 | Ferredoxin; electron transport, iron-sulfur, dupli | 2e-08 | |
| 1xer_A | 103 | Ferredoxin; electron transport, iron-sulfur, dupli | 2e-04 | |
| 3gyx_B | 166 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 1e-07 | |
| 1jnr_B | 150 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 3e-07 | |
| 1jb0_C | 80 | Photosystem I iron-sulfur center; membrane protein | 3e-07 | |
| 1jb0_C | 80 | Photosystem I iron-sulfur center; membrane protein | 4e-05 | |
| 2fdn_A | 55 | Ferredoxin; electron transport, iron-sulfur, 4Fe-4 | 4e-07 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 5e-07 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 8e-05 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 6e-07 | |
| 1hfe_L | 421 | Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg | 6e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-05 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-05 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-05 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-05 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-05 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 2e-05 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 1e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-05 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-05 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-05 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 3e-05 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 5e-05 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 5e-05 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 5e-05 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 9e-05 | |
| 3eun_A | 82 | Ferredoxin; electron transport, [4Fe-4S] cluster, | 1e-04 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-04 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-04 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 5e-04 | |
| 3c8y_A | 574 | Iron hydrogenase 1; dithiomethylether, H-cluster, | 4e-04 | |
| 1kqf_B | 294 | FDH-N beta S, formate dehydrogenase, nitrate-induc | 5e-04 | |
| 1h0h_B | 214 | Formate dehydrogenase (small subunit); tungsten se | 5e-04 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 6e-04 | |
| 1dax_A | 64 | Ferredoxin I; electron transport, electron-transfe | 8e-04 |
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 905 bits (2340), Expect = 0.0
Identities = 416/610 (68%), Positives = 501/610 (82%), Gaps = 10/610 (1%)
Query: 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGI 60
MSD+ +RIAIVS+D+CKPKKCRQECK+SCPVVKTGKLCIEVTP +KIAFISE LCIGCGI
Sbjct: 1 MSDKNSRIAIVSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGI 60
Query: 61 CVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTAL 120
CVKKCPF+AIQIINLP +L+ THRY N+FKLHRLP PRPGQVLGLVGTNGIGKSTAL
Sbjct: 61 CVKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTAL 120
Query: 121 KILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180
KILAGK KPNLGRF++PP+WQEI+ YFRGSELQNYFT++LED++KAIIKPQYVD+IP+A+
Sbjct: 121 KILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAI 180
Query: 181 QGNVGQVLDQKDERDMK-----ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235
+G V +V + R K L L V+ R++ LSGGELQRFAI + VQ A
Sbjct: 181 KGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEA 240
Query: 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGA 295
++YMFDEPSSYLDVKQRL AAQ++RSLL P YVI VEHDLSVLDYLSDF+C +YG P
Sbjct: 241 DVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300
Query: 296 YGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTM 355
YGVVTLP SVREGINIFL G +P ENLRFR E+L FR+A+ ++ + + A + YP++
Sbjct: 301 YGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRA-FSYPSL 359
Query: 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNV 415
KTQG+F L V EGEF+DS+I+VM+GENGTGKTT I++LAG LKPD +D IP+ NV
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD----IPKLNV 415
Query: 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQR 475
S KPQKI+PKF TVR L +KIR + +PQF +DV+KPL I+ ++DQEV +LSGGELQR
Sbjct: 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQR 475
Query: 476 VALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLA 535
VA+ L LG PADIYLIDEPSAYLDSEQRI+ +KVI+RFILH KKTAF+VEHDFIMATYLA
Sbjct: 476 VAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLA 535
Query: 536 DRVIVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQK 595
D+VIV+EG PS + A AP+SLLTG N FL +L++TFRRDP +FRPRINKLDS D++QK
Sbjct: 536 DKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRINKLDSQMDKEQK 595
Query: 596 AAGSYYYLDD 605
++G+Y++LD+
Sbjct: 596 SSGNYFFLDN 605
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 893 bits (2309), Expect = 0.0
Identities = 282/601 (46%), Positives = 384/601 (63%), Gaps = 11/601 (1%)
Query: 3 DRLTRIAIVSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGIC 61
R RIA++ D+C P KC C++ CPV + G I + I E C GCGIC
Sbjct: 16 VRKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGIC 75
Query: 62 VKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALK 121
V KCPF AI I+NLP+ LD+D HRYG N F L+RLP+ + G V+G+VG NG GK+TA+K
Sbjct: 76 VHKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVK 135
Query: 122 ILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQ 181
ILAG+L PNL + W ++ FRG+ELQNYF R+ ++ ++KPQYVD +PKAV+
Sbjct: 136 ILAGQLIPNLCE--DNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVK 193
Query: 182 GNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFD 241
G V ++L + DE ++ +L+L V+DR + LSGGELQR AIA ++ A Y FD
Sbjct: 194 GKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFD 253
Query: 242 EPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTL 301
EPSSYLD++QRLK A+V+R L V+VVEHDL+VLDYLSD I +YG+PG YG+ +
Sbjct: 254 EPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSK 313
Query: 302 PFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGN 361
P R GIN FL G++ EN+RFR + F T ++E +YP +VK G+
Sbjct: 314 PKGTRNGINEFLQGYLKDENVRFRPYEIRF----TKLSERVDVERETLVEYPRLVKDYGS 369
Query: 362 FKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQK 421
FKL+V GE ++I ++G NG GKTTF++MLAG+ +P + + V+YKPQ
Sbjct: 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK----VEWDLTVAYKPQY 425
Query: 422 ISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481
I +++ TV LL + + ++++KPL I L D+ V +LSGGELQRVA+
Sbjct: 426 IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 485
Query: 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY 541
L + ADIYL+DEPSAYLD EQR+ ++ I+ + +KTA VVEHD +M Y++DR+IV+
Sbjct: 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 545
Query: 542 EGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYY 601
EG+P A P + GMN FL+ + ITFRRDP + RPR NK S KDR+QKA G YY
Sbjct: 546 EGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYY 605
Query: 602 Y 602
Y
Sbjct: 606 Y 606
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 775 bits (2003), Expect = 0.0
Identities = 248/548 (45%), Positives = 341/548 (62%), Gaps = 11/548 (2%)
Query: 56 IGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIG 115
+G + ++ + L++D HRYG N F L+RLPV + G V+G+VG NG G
Sbjct: 1 MGSSHHHHHHSSGLVPRSHM-EQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTG 59
Query: 116 KSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDH 175
KSTA+KILAG+L PNL + W ++ FRG+ELQNYF ++ ++ ++KPQYVD
Sbjct: 60 KSTAVKILAGQLIPNLCG--DNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDL 117
Query: 176 IPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235
IPKAV+G V ++L + DE ++ L+L V++R + LSGGELQR AIA ++NA
Sbjct: 118 IPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNA 177
Query: 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGA 295
Y FDEPSSYLD++QRL AA+ +R L V+VVEHDL+VLDYLSD I +YG+PG
Sbjct: 178 TFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGV 237
Query: 296 YGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTM 355
YG+ + P R GIN FL G++ EN+RFR + F EIE YP +
Sbjct: 238 YGIFSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGER----VEIERETLVTYPRL 293
Query: 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNV 415
VK G+F+L+V GE ++I ++G NG GKTTF++MLAG+ +P + V
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE----GKIEWDLTV 349
Query: 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQR 475
+YKPQ I ++ TV LL + + ++++KPL I L D+EV LSGGELQR
Sbjct: 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQR 409
Query: 476 VALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLA 535
VA+ L + ADIYL+DEPSAYLD EQR+ ++ I+ + +KTA VVEHD +M Y++
Sbjct: 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 469
Query: 536 DRVIVYEGQPSVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQK 595
DR++V+EG+P A P + GMN FL+ + ITFRRDP RPR NK S KDR+QK
Sbjct: 470 DRLMVFEGEPGKYGRALPPMGMREGMNRFLASIGITFRRDPDTGRPRANKEGSVKDREQK 529
Query: 596 AAGSYYYL 603
G YYY+
Sbjct: 530 EKGEYYYI 537
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 749 bits (1936), Expect = 0.0
Identities = 216/528 (40%), Positives = 329/528 (62%), Gaps = 6/528 (1%)
Query: 79 LDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP 138
++ + HRY N FKL LP P+ +LG++G NG+GK+T LKILAG++ PN G N+
Sbjct: 1 MEGEVIHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV 60
Query: 139 DWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA 198
E+L FRG E+ NYF + + LK + K QYV++ K ++G V ++L + DER K
Sbjct: 61 GKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKD 120
Query: 199 DLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV 258
++ L++ + +++ LSGG LQR +A ++ A++Y+FD+PSSYLDV++R+ A+
Sbjct: 121 EVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKA 180
Query: 259 VRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVP 318
+R LL+ N YVIVV+HDL VLDYL+D I +YG+ YG V+ ++ R GIN FL G++P
Sbjct: 181 IRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLP 239
Query: 319 TENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIV 378
EN++ R + + F + E + + + K+ ++K G+F+L V GE + +II
Sbjct: 240 AENMKIRPDEIKFMLKEVSDLDLSK-DLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIG 298
Query: 379 MLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKI 438
+LG NG GKTTF R+L G + D V + +SYKPQ+I P + TV+ L
Sbjct: 299 ILGPNGIGKTTFARILVGEITADEGS---VTPEKQILSYKPQRIFPNYDGTVQQYLENAS 355
Query: 439 RDSYT-HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497
+D+ + F +V K L + +L++ V +LSGGELQ++ + L K AD+Y++D+PS+Y
Sbjct: 356 KDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSY 415
Query: 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557
LD E+R + AK IKR K F+++HD + Y+ADR+IV++G+P +A +P +L
Sbjct: 416 LDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475
Query: 558 LTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYLDD 605
TGMN FL L++TFRRD RPR+NK+ S DR QK G YY +
Sbjct: 476 KTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYYSMVL 523
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 36/190 (18%), Positives = 79/190 (41%), Gaps = 21/190 (11%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
+ +G+ +LG+NG GK+T + +L G+ +P +E+ + ++ + PQ
Sbjct: 23 QLNFDLNKGDIL-----AVLGQNGCGKSTLLDLLLGIHRPIQ---GKIEVYQ-SIGFVPQ 73
Query: 421 KISPKFQSTVRHLL------HQKI--RDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGE 472
S F +V ++ H + Q + L + L +E +LSGG+
Sbjct: 74 FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQ 133
Query: 473 LQRVALCLCLGKPADIYLIDEPSAYLD--SEQRIVAAKVIKRFILHAKKTAFVVEHDFIM 530
Q + + + + L+DEP++ LD ++ ++ ++ T H
Sbjct: 134 RQLILIARAIASECKLILLDEPTSALDLANQDIVL--SLLIDLAQSQNMTVVFTTHQPNQ 191
Query: 531 ATYLADRVIV 540
+A++ ++
Sbjct: 192 VVAIANKTLL 201
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 1e-13
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY-V 269
R LSGG+ Q IA ++ + DEP+S LD+ + ++ L + + V
Sbjct: 123 KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTV 182
Query: 270 IVVEHDLSVLDYLSDFICCLYGKPGAYG----VVT 300
+ H + + +++ L + +G ++T
Sbjct: 183 VFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILT 217
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR 133
G +L ++G NG GKST L +L G +P G+
Sbjct: 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 2e-22
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 22/183 (12%)
Query: 367 VEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKF 426
V GE +++LG NG+GKTT +R ++GLL P S ++ I V I
Sbjct: 28 VNGEK-----VIILGPNGSGKTTLLRAISGLL-PYS---GNIFINGMEVRKIRNYIRYST 78
Query: 427 QSTVRHLLHQKIRDSYTHP--------QFVSDVMKPL-LIEQLMDQEVVNLSGGELQRVA 477
+ + + D +++K L L E+++ +++ LS G+ V
Sbjct: 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVR 138
Query: 478 LCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADR 537
L L +I +DEP +D+ +R VI R+I K +V H+ M +
Sbjct: 139 TSLALASQPEIVGLDEPFENVDAARR----HVISRYIKEYGKEGILVTHELDMLNLYKEY 194
Query: 538 VIV 540
Sbjct: 195 KAY 197
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-15
Identities = 36/192 (18%), Positives = 77/192 (40%), Gaps = 26/192 (13%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
G+ + ++G NG GK+T L+ ++G L P G + G E++ +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISG-LLPYSGNI-----------FINGMEVRK-----IR 71
Query: 162 DNLKAIIKPQYVDHIPKA--VQGNVGQVLD-QKDERDMKADLCTDLDLN-QVIDRNVGDL 217
+ ++ + V V + + +RD+ ++ L L +++ R + L
Sbjct: 72 NYIRYST--NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKL 129
Query: 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLS 277
S G+ ++ EI DEP +D +R ++ ++ I+V H+L
Sbjct: 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHELD 186
Query: 278 VLDYLSDFICCL 289
+L+ ++
Sbjct: 187 MLNLYKEYKAYF 198
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 8e-21
Identities = 50/215 (23%), Positives = 81/215 (37%), Gaps = 35/215 (16%)
Query: 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VE 404
Y Y + + GE +LG NG GK+T + G+LKP S +
Sbjct: 14 NYNYSDGTHALKGINMNIKRGEV-----TAILGGNGVGKSTLFQNFNGILKPSSGRILFD 68
Query: 405 DSDVEIPEFNVSYKPQKISPKFQ--------STVRH----------LLHQKIRDSYTHPQ 446
+ ++ + + I FQ ++V L +IR +
Sbjct: 69 NKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR------K 122
Query: 447 FVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG-KPADIYLIDEPSAYLDSEQRIV 505
V + +K IE L D+ LS G+ +RVA+ L +P + ++DEP+A LD
Sbjct: 123 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP-KVLILDEPTAGLDPMGVSE 181
Query: 506 AAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 540
K++ T + HD + D V V
Sbjct: 182 IMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFV 216
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-13
Identities = 43/224 (19%), Positives = 83/224 (37%), Gaps = 58/224 (25%)
Query: 81 KDTTHRYGPNTFKLHR--LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP 138
++ + Y T L + + R G+V ++G NG+GKST + G LKP+ GR
Sbjct: 11 EELNYNYSDGTHALKGINMNIKR-GEVTAILGGNGVGKSTLFQNFNGILKPSSGR----- 64
Query: 139 DWQEILTYFRGSELQNYFTRILEDNLKAIIKP-----QYVDH------------------ 175
F + + + + Q D+
Sbjct: 65 ------ILFDNKPIDY-----SRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM 113
Query: 176 -IPKA-VQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQ 233
+P+ ++ V L + + + D+ LS G+ +R AIA V V
Sbjct: 114 KLPEDEIRKRVDNALKR-------------TGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 160
Query: 234 NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDL 276
++ + DEP++ LD + +++ + + +I+ HD+
Sbjct: 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI 204
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 95.9 bits (238), Expect = 1e-20
Identities = 71/404 (17%), Positives = 129/404 (31%), Gaps = 83/404 (20%)
Query: 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161
+ G+ G NG GKST ++ +A + F + + T + ++
Sbjct: 460 RARRYGICGPNGCGKSTLMRAIANG---QVDGFPTQEECR---TVYVEHDIDG-----TH 508
Query: 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLDQ---KDERDMKADLCTDLDLNQVIDRNVGDLS 218
+ + +V + + L + DE I + LS
Sbjct: 509 SDTSVL---DFVFESGVGTKEAIKDKLIEFGFTDEM---------------IAMPISALS 550
Query: 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSV 278
GG + A+A ++NA+I + DEP+++LD A +V L I + HD
Sbjct: 551 GGWKMKLALARAVLRNADILLLDEPTNHLDTV---NVAWLVNYLNTCGITSITISHDSVF 607
Query: 279 LDYLSDFICCLYGK-----PGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRV 333
LD + ++I G G + FV E L+
Sbjct: 608 LDNVCEYIINYEGLKLRKYKGNF-----------------TEFVKKCPAAKAYEELSNTD 650
Query: 334 AETPQESA-------------EEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVML 380
E ++ ++YP K Q + + + + S I ++
Sbjct: 651 LEFKFPEPGYLEGVKTKQKAIVKVTNME-FQYPGTSKPQ----ITDINFQCSLSSRIAVI 705
Query: 381 GENGTGKTTFIRMLAGLLKPDSVEDSDVEI-PEFNVSYKPQ----KISPKFQSTVRHLLH 435
G NG GK+T I +L G L P S E V ++Y Q I T +
Sbjct: 706 GPNGAGKSTLINVLTGELLPTSGE---VYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQ 762
Query: 436 QKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALC 479
+ + + + ++ + G + +
Sbjct: 763 WRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIH 806
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 2e-14
Identities = 43/300 (14%), Positives = 90/300 (30%), Gaps = 22/300 (7%)
Query: 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFIC-CLYGKPGAYGVV 299
D QVV LL+ + + + + + + A+
Sbjct: 332 DAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTH 391
Query: 300 TLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQ 359
P+ + R D + ++ E++
Sbjct: 392 ITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILL 451
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKP 419
+L++ + G NG GK+T +R +A + Y
Sbjct: 452 NKTQLRLKRAR-----RYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT-----VYVE 501
Query: 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPL-LIEQLMDQEVVNLSGGELQRVAL 478
+ +L + + D + ++++ + LSGG ++AL
Sbjct: 502 H--DIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLAL 559
Query: 479 CLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRV 538
+ + ADI L+DEP+ +LD+ + ++ T+ + HD + D V
Sbjct: 560 ARAVLRNADILLLDEPTNHLDTV----NVAWLVNYLNTCGITSITISHD----SVFLDNV 611
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 3e-11
Identities = 61/375 (16%), Positives = 116/375 (30%), Gaps = 44/375 (11%)
Query: 206 LNQVIDRNVGDLSGGELQRF-------------AIAVVAVQNAEI-YMFDEPSSYLDVKQ 251
L+ V + + + G +L+++ A A + N ++ + F EP VK
Sbjct: 608 LDNVCEY-IINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKT 666
Query: 252 RLKA-AQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTL--------- 301
+ KA +V + D++ LS I + G GA G TL
Sbjct: 667 KQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVI-GPNGA-GKSTLINVLTGELL 724
Query: 302 PFS--VREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQ 359
P S V N + ++ + L +E Q + E +
Sbjct: 725 PTSGEVYTHENCRI-AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINE 783
Query: 360 GNF----KLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNV 415
+ K+ +EG I + L G E + N
Sbjct: 784 NDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNA 843
Query: 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLI------EQLMDQEVVNLS 469
++ V + ++ S ++ E + + LS
Sbjct: 844 WIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLS 903
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFI 529
GG+ ++ L + + ++DEP+ YLD + +K +K F + ++ H
Sbjct: 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSAE 959
Query: 530 MATYLADRVIVYEGQ 544
L + V +
Sbjct: 960 FTKNLTEEVWAVKDG 974
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 6e-06
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR--LKAAQVVRS 261
LD V + LSGG+ + +A Q + + DEP++YLD L A
Sbjct: 889 LDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKA----- 943
Query: 262 LLRPNSYVIVVEHDLSVLDYLSDFI 286
L VI++ H L++ +
Sbjct: 944 LKEFEGGVIIITHSAEFTKNLTEEV 968
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 9e-05
Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 22/170 (12%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQ-NYFTRI 159
+ ++G NG GKST + +L G+L P G + Y +
Sbjct: 697 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY------------THENCRIAYIKQH 744
Query: 160 LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219
++++ + ++I Q +D M + + + + G
Sbjct: 745 AFAHIESHLDKTPSEYIQWRFQTG-------EDRETMDRANRQINENDAEAMNKIFKIEG 797
Query: 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269
+ I + + + E S L +K+ + V + N+++
Sbjct: 798 TPRRIAGI--HSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWI 845
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 9e-20
Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 32/219 (14%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-SVEDSDVEIPEFN-------V 415
+V GE ++G NG GK+T + +AG+ S++ + + ++
Sbjct: 21 GEVRAGEIL-----HLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 416 SYKPQKISPKFQSTVRHL--LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGEL 473
+Y Q+ +P F + V H LH + T + ++DV L ++ + + LSGGE
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLH---QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEW 132
Query: 474 QRVALCLCL-------GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526
QRV L + + L+DEP LD Q+ K++ + H
Sbjct: 133 QRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS-QQGLAIVMSSH 191
Query: 527 DFIMATYLADRVIV-YEGQPSVDCVAN-APQSLLTGMNL 563
D A R + G+ +A+ + +LT NL
Sbjct: 192 DLNHTLRHAHRAWLLKGGK----MLASGRREEVLTPPNL 226
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 4e-18
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 30/188 (15%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
R G++L LVG NG GKST L +AG + G F G L+ + L
Sbjct: 24 RAGEILHLVGPNGAGKSTLLARMAG-MTSGKGS-----------IQFAGQPLEAWSATKL 71
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVL-----DQKDERDMKADLCTDLDLNQVIDRNVG 215
+ A + Q V L D+ + D+ L L+ + R+
Sbjct: 72 ALHR-AYL-SQ---QQTPPFATPVWHYLTLHQHDKTRTELL-NDVAGALALDDKLGRSTN 125
Query: 216 DLSGGELQRFAIAVVAVQ-------NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY 268
LSGGE QR +A V +Q ++ + DEP + LDV Q+ +++ +L +
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLA 185
Query: 269 VIVVEHDL 276
+++ HDL
Sbjct: 186 IVMSSHDL 193
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 3e-17
Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 44/202 (21%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKP 419
L + EGE +++ G G+GK+T ++++AGL++P S + + E
Sbjct: 28 LVINEGEC-----LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIR----- 77
Query: 420 QKISPKFQ--------STVRH---------LLHQKIRDSYTHPQFVSDVMKP--LLIEQL 460
+ I FQ V + V M+ L +
Sbjct: 78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV------PLVKKAMEFVGLDFDSF 131
Query: 461 MDQEVVNLSGGELQRVALCLCLG-KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK- 518
D+ LSGGE +RVA+ + +P DI ++DEP LD E + +++++
Sbjct: 132 KDRVPFFLSGGEKRRVAIASVIVHEP-DILILDEPLVGLDREGKTDLLRIVEK--WKTLG 188
Query: 519 KTAFVVEHDFIMATYLADRVIV 540
KT ++ HD DRV+V
Sbjct: 189 KTVILISHDIETVINHVDRVVV 210
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 51/215 (23%), Positives = 82/215 (38%), Gaps = 41/215 (19%)
Query: 81 KDTTHRYGPNTFKLHR------LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR- 133
+ +H + T + L + G+ L + G G GKST L+I+AG ++P G
Sbjct: 6 VNVSHIFHRGTPLEKKALENVSLVINE-GECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64
Query: 134 --FNNPPDWQEILTY----FRGSELQNYFTRILED------NLKAIIKPQYVDHIPKAVQ 181
EI F+ E Q + R+ ++ N +
Sbjct: 65 LYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----------PDRDPV 114
Query: 182 GNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFD 241
V + ++ LD + DR LSGGE +R AIA V V +I + D
Sbjct: 115 PLVKKAMEF-----------VGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILD 163
Query: 242 EPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDL 276
EP LD + + ++V VI++ HD+
Sbjct: 164 EPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.7 bits (206), Expect = 8e-17
Identities = 87/557 (15%), Positives = 170/557 (30%), Gaps = 151/557 (27%)
Query: 147 FRGSELQNYFTRILEDNLKAIIKP---QYVDHIPKAV--QGNVGQVLDQKDERDMKADLC 201
F E Q + IL A + + V +PK++ + + ++ KD
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD-AVSGTLRL 67
Query: 202 TDLDLNQ---VIDRNVGDLSGGELQR---F---AIAVVAVQ---NAEIY------MFDEP 243
L++ ++ + V ++ L+ F I Q +Y ++++
Sbjct: 68 FWTLLSKQEEMVQKFVEEV----LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 244 SSY--LDVKQRLKAAQVVRSLL---RPNSYVIVVEHDL-----SVL--DYLSD--FICCL 289
+ +V RL+ +R L RP V++ + + + D C +
Sbjct: 124 QVFAKYNV-SRLQPYLKLRQALLELRPAKNVLI--DGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 290 YGKPGAY----GVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIE 345
+ P +V E + L P N R + + + I+
Sbjct: 181 DF--KIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDH-----SSNIKLRIHSIQ 231
Query: 346 TYARY-----KYPTM------VKTQG-----NFKLKVVEGEFT--DSQIIVMLGENGTGK 387
R Y V+ N K++ T Q+ L T
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTTH 288
Query: 388 TTFIRMLAGLLKPDSVE------DSDV-EIPEFNVSYKPQKIS------PKFQST---VR 431
+ L + D ++P ++ P+++S +T +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 432 HL----LHQKIRDSYTH--PQ-----------FVSDVMKPL-LIEQL---MDQEVVNLSG 470
H+ L I S P F P L+ + + + V +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 471 GELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIM 530
+L + +L K + I + PS YL+ + K+ + LH +V+H I
Sbjct: 409 NKLHKYSLVEKQPKESTISI---PSIYLELKV-----KLENEYALHRS----IVDHYNIP 456
Query: 531 ATYLADRVIVYEGQPSVDC---------VANAPQSLLTGM--NLFLSHLDITF-----RR 574
T+ +D P +D + N + +F LD F R
Sbjct: 457 KTFDSD----DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---LDFRFLEQKIRH 509
Query: 575 DPTNFRPRINKLDSTKD 591
D T + + L++ +
Sbjct: 510 DSTAWNASGSILNTLQQ 526
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 7e-04
Identities = 36/261 (13%), Positives = 80/261 (30%), Gaps = 78/261 (29%)
Query: 407 DVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVV 466
D E E YK I F+ + + + V D+ K +L ++ +D ++
Sbjct: 8 DFETGEHQYQYK--DILSVFEDAF-------VDN--FDCKDVQDMPKSILSKEEID-HII 55
Query: 467 NLSGGELQ--RVALCLCLGKPADIY--------------LID-------EPSA------- 496
R+ L K ++ L+ +PS
Sbjct: 56 MSKDAVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 497 -----YLDSE-------QRIVAAKVIKRFILHAKKTAFVVEHDFIMA----TYLADRVI- 539
Y D++ R+ +++ +L + V+ + T++A V
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLGSGKTWVALDVCL 172
Query: 540 ---VYEGQP------SVDCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTK 590
V ++ N+P+++L + L +D + + ++ S +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 591 DRDQKAAGSYYY------LDD 605
++ S Y L +
Sbjct: 232 AELRRLLKSKPYENCLLVLLN 252
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 27/199 (13%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV-EIPEFNV 415
N + + GE +LG +G GKTTF+R++AGL P + +D V + V
Sbjct: 23 NVNINIENGER-----FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 416 SYKPQKISPKFQS-------TVRH-----LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ 463
+ +KI FQ+ T L + K+ + V +V K L I +++
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE-EIRKRVEEVAKILDIHHVLNH 136
Query: 464 EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK-KTAF 522
LSG + QRVAL L K + L+DEP + LD+ R A ++K + ++
Sbjct: 137 FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE--VQSRLGVTL 194
Query: 523 V-VEHDFIMATYLADRVIV 540
+ V HD +ADRV V
Sbjct: 195 LVVSHDPADIFAIADRVGV 213
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 45/194 (23%)
Query: 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162
G+ G++G +G GK+T ++I+AG P+ G YF R++
Sbjct: 31 GERFGILGPSGAGKTTFMRIIAGLDVPSTGEL-----------YFDD--------RLVAS 71
Query: 163 NLKAIIKPQYVD------------HIPKAVQGNVGQVLDQ----KDERDMK----ADLCT 202
N K I+ P+ + N+ L K+E + A +
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPN--LTAFENIAFPLTNMKMSKEEIRKRVEEVAKI-- 127
Query: 203 DLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA-AQVVRS 261
LD++ V++ +LSG + QR A+A V++ + + DEP S LD + R A A V
Sbjct: 128 -LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186
Query: 262 LLRPNSYVIVVEHD 275
R ++VV HD
Sbjct: 187 QSRLGVTLLVVSHD 200
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 1e-15
Identities = 46/242 (19%), Positives = 86/242 (35%), Gaps = 64/242 (26%)
Query: 69 AIQIINLPKDLDKDTTHRYGPNT------FKLHRLPVPRPGQVLGLVGTNGIGKSTALKI 122
A+ + +L K R G F++ G++ GL+G NG GK+T L+I
Sbjct: 15 AVVVKDLRK--------RIGKKEILKGISFEI------EEGEIFGLIGPNGAGKTTTLRI 60
Query: 123 LAGKLKPNLGR--------FNNP----------PDWQEILTYFRGSELQNYFTRILEDNL 164
++ +KP+ G P P+ +G E +
Sbjct: 61 ISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF----- 115
Query: 165 KAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQR 224
Y + +M L + I V S G +++
Sbjct: 116 -------Y--ASSS------------SEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRK 154
Query: 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSD 284
IA + N + + DEP+S LDV + ++++ + ++V H++ +++L D
Sbjct: 155 LLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCD 214
Query: 285 FI 286
I
Sbjct: 215 RI 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 6e-14
Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 49/220 (22%)
Query: 356 VKTQGNFK------LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVE 409
K G + ++ EGE I ++G NG GKTT +R+++ L+KP S V
Sbjct: 22 RKRIGKKEILKGISFEIEEGE-----IFGLIGPNGAGKTTTLRIISTLIKPSS---GIVT 73
Query: 410 IPEFNVS-----------YKPQKISP----------KFQSTVRHLLHQKIRDSYTHPQFV 448
+ NV Y P++ +F + +I + V
Sbjct: 74 VFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM------V 127
Query: 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCL-GKPADIYLIDEPSAYLDSEQRIVAA 507
+ + + + V S G ++++ + L P L DEP++ LD
Sbjct: 128 ERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL-DEPTSGLDVLNAREVR 186
Query: 508 KVIKRFILHAKKTAFVVEHDFIM--ATYLADRV-IVYEGQ 544
K++K+ T V H M +L DR+ +++ G
Sbjct: 187 KILKQ-ASQEGLTILVSSH--NMLEVEFLCDRIALIHNGT 223
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 2e-15
Identities = 32/187 (17%), Positives = 70/187 (37%), Gaps = 18/187 (9%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
+ + +G ++ G NG GKTT ++ ++ LKP + + +
Sbjct: 27 RITMTIEKGN-----VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 81
Query: 417 YKPQKISPKFQSTVRHLL--HQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQ 474
+ P++I + +V L + + + D ++ + + L + + LS G ++
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKK-LGELSQGTIR 140
Query: 475 RVAL-CLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATY 533
RV L L +IY++D+P +D + + K I + ++
Sbjct: 141 RVQLASTLLVNA-EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--ELS-- 195
Query: 534 LADRVIV 540
D
Sbjct: 196 YCDVNEN 202
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 6e-14
Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 51/227 (22%)
Query: 69 AIQIINLPKDLDKDTTHRYGPN-----TFKLHRLPVPRPGQVLGLVGTNGIGKSTALKIL 123
++I +L Y T + + G V+ G NGIGK+T LK +
Sbjct: 10 KLEIRDLSV--------GYDKPVLERITMTIEK------GNVVNFHGPNGIGKTTLLKTI 55
Query: 124 AGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRI--------LEDNLKAIIKPQYVDH 175
+ LKP G EI+ + G + +I + + Y+
Sbjct: 56 STYLKPLKG---------EII--YNGVPITKVKGKIFFLPEEIIVPRKISVE---DYLKA 101
Query: 176 IPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235
+ + K ++ D +++ + + +G+LS G ++R +A + NA
Sbjct: 102 V--------ASLYGVKVNKNEIMDALESVEVLDLKKK-LGELSQGTIRRVQLASTLLVNA 152
Query: 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVV-EHDLSVLDY 281
EIY+ D+P +D + K + + +L+ VI+ +LS D
Sbjct: 153 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDV 199
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 4e-15
Identities = 39/197 (19%), Positives = 68/197 (34%), Gaps = 39/197 (19%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
G L G NG GK+T L IL G + G +
Sbjct: 45 AKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV-------NLFGKMPGKVGYSAE---- 93
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQ---VLD----------------QKDERDMKADLC 201
++ Q++ + ++ + V+D + R+ L
Sbjct: 94 --TVR-----QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLL 146
Query: 202 TDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRS 261
+ ++ + +G LS GE QR IA + ++ + DEP++ LD R ++ S
Sbjct: 147 KLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDS 206
Query: 262 LLR--PNSYVIVVEHDL 276
L P +I V H +
Sbjct: 207 LSDSYPTLAMIYVTHFI 223
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 8e-15
Identities = 46/253 (18%), Positives = 89/253 (35%), Gaps = 44/253 (17%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS---------VEDSDVEIPEF- 413
++ +G+ ++ G NG GKTT + +L S
Sbjct: 42 WQIAKGDKW-----ILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96
Query: 414 -NVSYKPQKISPKFQS--TVRHL----------LHQKIRDSYTHPQFVSDVMKPLLIEQL 460
++ + + KFQ V + ++Q I D ++K + +
Sbjct: 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE--IRNEAHQLLKLVGMSAK 154
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKT 520
Q + LS GE QRV + L + ++DEP+A LD R ++
Sbjct: 155 AQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTL 214
Query: 521 AFV-VEHDFIMATYLADRVIV-YEGQPSVDCVANAP-QSLLTGMNL---FLSHLDITFRR 574
A + V H T ++++ +GQ + + +LT N+ F ++ +
Sbjct: 215 AMIYVTHFIEEITANFSKILLLKDGQ----SIQQGAVEDILTSENMSRFFQKNVAVQRWN 270
Query: 575 DPTNFRPRINKLD 587
+ R + L+
Sbjct: 271 N----RFSMAMLE 279
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 8e-15
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 32/199 (16%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
N LK+ +GEF + +LG +G+GK+T + +AG+ + E +V+ P
Sbjct: 21 NINLKIKDGEF-----MALLGPSGSGKSTLLYTIAGI---YKPTSGKIYFDEKDVTELPP 72
Query: 421 K---ISPKFQS-------TVRH-----LLHQKIR--DSYTHPQFVSDVMKPLLIEQLMDQ 463
K + FQ+ TV L ++R + V +V K L I++L+++
Sbjct: 73 KDRNVGLVFQNWALYPHMTVYKNIAFPL---ELRKAPREEIDKKVREVAKMLHIDKLLNR 129
Query: 464 EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK-KTAF 522
LSGG+ QRVA+ L K ++ L+DEP + LD+ R+ +KR L +
Sbjct: 130 YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR--LQKELGITT 187
Query: 523 V-VEHDFIMATYLADRVIV 540
V V HD A +ADR+ V
Sbjct: 188 VYVTHDQAEALAMADRIAV 206
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 43/162 (26%)
Query: 108 LVGTNGIGKSTALKILAGKLKPNLGRF-------NN-PPDWQEILTYFRGSELQNYFTRI 159
L+G +G GKST L +AG KP G+ PP + + F QN+
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF-----QNW---- 84
Query: 160 LEDNLKAIIKPQYVDHIP-KAVQGNVGQVLDQ----KDERDMK----ADLCTDLDLNQVI 210
A+ Y P V N+ L+ ++E D K A + L +++++
Sbjct: 85 ------AL----Y----PHMTVYKNIAFPLELRKAPREEIDKKVREVAKM---LHIDKLL 127
Query: 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252
+R LSGG+ QR AIA V+ E+ + DEP S LD R
Sbjct: 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLR 169
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 9e-15
Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 47/212 (22%)
Query: 356 VKTQGNFKLKV---VEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV 408
K GNF+L V + ++ V+LG G GK+ F+ ++AG++KPD + +D+
Sbjct: 8 EKRLGNFRLNVDFEMGRDY-----CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Query: 409 -EIPEFNVSYKPQK--ISPKFQS-------TV--------RHLLHQKIRDSYTHPQFVSD 450
+P P++ I Q +V R++ + V +
Sbjct: 63 TPLP-------PERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRR------VRE 109
Query: 451 VMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVI 510
+ + L I L+D++ LSGGE QRVAL L + L+DEP + +D + + V + +
Sbjct: 110 MAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL 169
Query: 511 KRFILHAK--KTAFVVEHDFIMATYLADRVIV 540
+ + + V HD I A LAD V V
Sbjct: 170 RF--VQREFDVPILHVTHDLIEAAMLADEVAV 199
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 6e-09
Identities = 61/267 (22%), Positives = 96/267 (35%), Gaps = 61/267 (22%)
Query: 79 LDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF---- 134
L R G + L+G G GKS L+++AG +KP+ G
Sbjct: 3 LKVRAEKRLGNFRLNVD---FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG 59
Query: 135 ----NNPPDWQEILTYFRGSELQNY--FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL 188
PP+ + I Q+Y F P H+ +V N+ L
Sbjct: 60 ADITPLPPERRGIGFVP-----QDYALF-------------P----HL--SVYRNIAYGL 95
Query: 189 DQ--KDERDMKADLCTDL-DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSS 245
+ ERD + + + ++DR LSGGE QR A+A V + + DEP S
Sbjct: 96 RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS 155
Query: 246 YLDVKQR------LKAAQVVRSLLRPNSYVIVVEHD----LSVLDYLSDFICCLYGKPGA 295
+D+K + L+ Q R + ++ V HD L+D + + G
Sbjct: 156 AVDLKTKGVLMEELRFVQ--REF---DVPILHVTHDLIEAAM----LADEVAVMLN--GR 204
Query: 296 YGVVTLPFSVREGINIFLAGFVPTENL 322
+ N +A F+ NL
Sbjct: 205 IVEKGKLKELFSAKNGEVAEFLSARNL 231
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 4e-14
Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 32/199 (16%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
L + +GEF +V+LG +G GKTT +RM+AGL + + + + +V+Y P
Sbjct: 29 KLNLTIKDGEF-----LVLLGPSGCGKTTTLRMIAGL---EEPTEGRIYFGDRDVTYLPP 80
Query: 421 K---ISPKFQS-------TVRH-----LLHQKIR--DSYTHPQFVSDVMKPLLIEQLMDQ 463
K IS FQS TV L KI+ + V + L IE+L+++
Sbjct: 81 KDRNISMVFQSYAVWPHMTVYENIAFPL---KIKKFPKDEIDKRVRWAAELLQIEELLNR 137
Query: 464 EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK-KTAF 522
LSGG+ QRVA+ + D+ L+DEP + LD++ R+ IK+ L K K
Sbjct: 138 YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK--LQQKLKVTT 195
Query: 523 V-VEHDFIMATYLADRVIV 540
+ V HD + A + DR+ V
Sbjct: 196 IYVTHDQVEAMTMGDRIAV 214
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 191 KDERDMK----ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
KDE D + A+L L + ++++R LSGG+ QR A+A V ++ + DEP S
Sbjct: 115 KDEIDKRVRWAAEL---LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171
Query: 247 LDVKQR 252
LD K R
Sbjct: 172 LDAKLR 177
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 63/210 (30%), Positives = 94/210 (44%), Gaps = 32/210 (15%)
Query: 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVE 409
KY VK +V +GEF + +LG +G GKTT + MLAG+ ++
Sbjct: 10 KKYFGKVKAVDGVSFEVKDGEF-----VALLGPSGCGKTTTLLMLAGI---YKPTSGEIY 61
Query: 410 IPEFNVSYKPQK---ISPKFQS-------TVRH-----LLHQKIR--DSYTHPQFVSDVM 452
+ V+ P K + FQ+ TV L + R + V ++
Sbjct: 62 FDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPL---RARRISKDEVEKRVVEIA 118
Query: 453 KPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKR 512
+ LLI+ L+D++ LSGG+ QRVAL L K + L DEP + LD+ R++ IK
Sbjct: 119 RKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH 178
Query: 513 FILHAK-KTAFV-VEHDFIMATYLADRVIV 540
L + V V HD A +A R+ V
Sbjct: 179 --LQQELGITSVYVTHDQAEAMTMASRIAV 206
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 191 KDERDMK----ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
KDE + + A L ++ ++DR LSGG+ QR A+A V+ ++ +FDEP S
Sbjct: 107 KDEVEKRVVEIARK---LLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSN 163
Query: 247 LDVKQR 252
LD R
Sbjct: 164 LDANLR 169
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 42/207 (20%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE----DSDVEIPEFNVS 416
L+V +GEF +++LG +G GKTT +RM+AGL +P + D V
Sbjct: 21 EMSLEVKDGEF-----MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV-----ADP 70
Query: 417 YKPQKISPK-------FQS-------TVRH-----LLHQKIR--DSYTHPQFVSDVMKPL 455
K + PK FQS TV L K+R Q V +V + L
Sbjct: 71 EKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL---KLRKVPRQEIDQRVREVAELL 127
Query: 456 LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515
+ +L++++ LSGG+ QRVAL + + ++L+DEP + LD++ R+ +K+ L
Sbjct: 128 GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK--L 185
Query: 516 HAK-KTAFV-VEHDFIMATYLADRVIV 540
+ + V HD + A + DR+ V
Sbjct: 186 QRQLGVTTIYVTHDQVEAMTMGDRIAV 212
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 6e-06
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 191 KDERDMK----ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
+ E D + A+L L L ++++R +LSGG+ QR A+ V+ ++++ DEP S
Sbjct: 113 RQEIDQRVREVAEL---LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 247 LDVKQR 252
LD K R
Sbjct: 170 LDAKLR 175
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 7e-12
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 210 IDRNVGDLSGGELQRFAIA------VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263
+R + LSGGE +A + + + DEP+ YLD ++R K ++ L
Sbjct: 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 110
Query: 264 RPNSYVIVVEHDLSVL---DYLSD 284
+ VI+V HD + D++
Sbjct: 111 KKIPQVILVSHDEELKDAADHVIR 134
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-09
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 461 MDQEVVNLSGGELQRVALCLCLGK------PADIYLIDEPSAYLDSEQRIVAAKVIKRFI 514
++ + LSGGE + L L + ++DEP+ YLD E+R +++R
Sbjct: 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER-Y 109
Query: 515 LHAKKTAFVVEHDF-IMATYLADRVI 539
L +V HD + AD VI
Sbjct: 110 LKKIPQVILVSHDEELKDA--ADHVI 133
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 39/201 (19%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV-EIPEFNV 415
N LKV GE+ V+LG G GKT F+ ++AG PDS ++ DV ++
Sbjct: 18 NLSLKVESGEY-----FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS---- 68
Query: 416 SYKPQK--ISPKFQS-------TVRH-----LLHQKIRDSYTHPQFVSDVMKPLLIEQLM 461
P+K I+ +Q+ V+ + +KI+D + V D + L IE L+
Sbjct: 69 ---PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP----KRVLDTARDLKIEHLL 121
Query: 462 DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK--K 519
D+ + LSGGE QRVAL L I L+DEP + LD + A +++ LH K
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV--LHKKNKL 179
Query: 520 TAFVVEHDFIMATYLADRVIV 540
T + HD A +ADR+ V
Sbjct: 180 TVLHITHDQTEARIMADRIAV 200
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 9e-05
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 46/169 (27%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF--------NNPPDWQEILTYFRGSEL 152
G+ ++G G GK+ L+++AG P+ GR + P+ +I +
Sbjct: 24 ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY----- 78
Query: 153 QNY--F---TRILEDN----LKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTD 203
QNY F ++ N ++ + I + V
Sbjct: 79 QNYSLFPHMN--VKKNLEFGMR-------MKKIKDPKR--VLDTARD------------- 114
Query: 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252
L + ++DRN LSGGE QR A+A V N +I + DEP S LD + +
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ 163
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 4e-11
Identities = 39/213 (18%), Positives = 84/213 (39%), Gaps = 45/213 (21%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYK 418
+ V +G+ + +++G NG+GK+T I ++ G LK D V + +I + +
Sbjct: 25 GVSISVNKGD-----VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI----TNKE 75
Query: 419 PQKISPK-----FQS-------TV-------RHLLHQKIRDSYTHPQFVS---------- 449
P ++ FQ+ TV + +S + +++
Sbjct: 76 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF 135
Query: 450 DVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV 509
+++ L + L D++ LSGG+++ V + L + ++DEP A +
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 510 IKRFILHAKKTAFVVEHD--FIMATYLADRVIV 540
+ + T ++EH ++ D + V
Sbjct: 196 VLE-LKAKGITFLIIEHRLDIVLN--YIDHLYV 225
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 47/222 (21%), Positives = 83/222 (37%), Gaps = 42/222 (18%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNN------PPD----------WQE 142
G V ++G NG GKST + ++ G LK + GR F N P +Q
Sbjct: 31 NKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQT 90
Query: 143 ILTYFRGSELQNY---FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKA- 198
+ L+N E L ++ +++ E +M
Sbjct: 91 PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI-----------------PKEEEMVEK 133
Query: 199 --DLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAA 256
+ L L+ + DR G+LSGG+++ I + N ++ + DEP + +
Sbjct: 134 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 257 QVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL-YGKPGAYG 297
V L +++EH L ++ D + + G+ A G
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 28/196 (14%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVSYKP 419
L + GE + ++G +G GKTT +R LAG +PDS + + N+
Sbjct: 25 LSLDPGEI-----LFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL--PV 77
Query: 420 QK--ISPKFQS-------TVRH-----LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEV 465
++ + Q TV L + K R + + + +++ I +L +
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR-IEAMLELTGISELAGRYP 136
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEP-SAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524
LSGG+ QR AL L ++ L+DEP SA LD + R + + + K+A V
Sbjct: 137 HELSGGQQQRAALARALAPDPELILLDEPFSA-LDEQLRRQIREDMIAALRANGKSAVFV 195
Query: 525 EHDFIMATYLADRVIV 540
HD A ADR+ V
Sbjct: 196 SHDREEALQYADRIAV 211
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 44/195 (22%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR------------FNNPPDWQEILTYFR 148
PG++L ++G +G GK+T L+ LAG +P+ G N P + +
Sbjct: 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLV- 86
Query: 149 GSELQNY--FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQ----KDERDMKADLCT 202
Q F P H+ V N+ L + + +
Sbjct: 87 ----QEGVLF-------------P----HL--TVYRNIAYGLGNGKGRTAQERQRIEAML 123
Query: 203 DL-DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRS 261
+L ++++ R +LSGG+ QR A+A + E+ + DEP S LD + R + + + +
Sbjct: 124 ELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA 183
Query: 262 LLRP-NSYVIVVEHD 275
LR + V HD
Sbjct: 184 ALRANGKSAVFVSHD 198
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 5e-10
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 50/208 (24%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV-EIPEFNV 415
++ EGE + +LG +G+GKTT +R++AGL +P + V ++P
Sbjct: 33 GVSFQIREGEM-----VGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP---- 83
Query: 416 SYKPQK--ISPKFQS-------TVRH-----LLHQKIRDSYTHPQFVSDVMKPLLIEQLM 461
PQK + FQ+ TV L +++ + V ++++ + +E
Sbjct: 84 ---PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR-VRELLRFMRLESYA 139
Query: 462 DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV-------IKRFI 514
++ LSGG+ QRVAL L + L DEP A +D ++ +++
Sbjct: 140 NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID-------TQIRRELRTFVRQ-- 190
Query: 515 LHAK--KTAFVVEHDFIMATYLADRVIV 540
+H + T+ V HD A +ADRV+V
Sbjct: 191 VHDEMGVTSVFVTHDQEEALEVADRVLV 218
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 45/170 (26%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNN------PPDWQEILTYFRGSEL 152
R G+++GL+G +G GK+T L+++AG +P G PP + + F
Sbjct: 39 REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVF----- 93
Query: 153 QNY--F---TRILEDN----LKAIIKPQYVDHIPKA-VQGNVGQVLDQKDERDMKADLCT 202
QNY F T + DN L+ +PK + V ++L
Sbjct: 94 QNYALFQHMT--VYDNVSFGLR-------EKRVPKDEMDARVRELLRF------------ 132
Query: 203 DLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252
+ L +R +LSGG+ QR A+A ++ +FDEP + +D + R
Sbjct: 133 -MRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIR 181
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 5e-10
Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 9/150 (6%)
Query: 140 WQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKAD 199
+ L+ +G KA+ + + I + + + K +
Sbjct: 169 AYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRA 228
Query: 200 LCTDLDL---NQVIDRNVGDLSGGELQRFAIAV------VAVQNAEIYMFDEPSSYLDVK 250
+ L + +R + LSGGE +A + + DEP+ YLD +
Sbjct: 229 EENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEE 288
Query: 251 QRLKAAQVVRSLLRPNSYVIVVEHDLSVLD 280
+R K ++ L+ VI+V HD + D
Sbjct: 289 RRRKLITIMERYLKKIPQVILVSHDEELKD 318
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 4e-08
Identities = 37/232 (15%), Positives = 74/232 (31%), Gaps = 14/232 (6%)
Query: 318 PTENLRFRDESLTFRVAETPQESAEEIETYARYK--YPTMVKTQGNFK--LKVVEGEFTD 373
R + + + +E Y + QG L+ E
Sbjct: 97 IHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKV 156
Query: 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHL 433
+ ++ L + T + G + + + + KI
Sbjct: 157 VREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEF 216
Query: 434 LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG------KPAD 487
K + + + ++ ++ + ++ + LSGGE + L L
Sbjct: 217 TEGKYSEVVV--RAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEIS 274
Query: 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 539
+ ++DEP+ YLD E+R +++R L +V HD + AD VI
Sbjct: 275 LLILDEPTPYLDEERRRKLITIMER-YLKKIPQVILVSHDEELKDA-ADHVI 324
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 58/212 (27%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
+ L + EGEF +V +G +G GK+T +RM+AGL +++ D+ I E ++ P
Sbjct: 21 DINLDIHEGEF-----VVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTP- 71
Query: 421 KISPK-------FQS-------TV----------RHLLHQKIRDSYTHPQFVSDVMKPLL 456
P FQS +V + I Q V+ V + L
Sbjct: 72 ---PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN------QRVNQVAEVLQ 122
Query: 457 IEQLMDQEVVNLSGGELQRVALCLCLG-----KPADIYLIDEPSAYLDSEQRIVAAKV-I 510
+ L+D++ LSGG+ QRVA +G +P ++L+DEP + LD+ R V ++ I
Sbjct: 123 LAHLLDRKPKALSGGQRQRVA----IGRTLVAEP-SVFLLDEPLSNLDAALR-VQMRIEI 176
Query: 511 KRFILHAK-KTAFV-VEHDFIMATYLADRVIV 540
R LH + + V HD + A LAD+++V
Sbjct: 177 SR--LHKRLGRTMIYVTHDQVEAMTLADKIVV 206
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 191 KDERDMK----ADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246
K+ + + A++ L L ++DR LSGG+ QR AI V +++ DEP S
Sbjct: 107 KEVINQRVNQVAEV---LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163
Query: 247 LDVKQR 252
LD R
Sbjct: 164 LDAALR 169
|
| >1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A Length = 103 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-08
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 10 IVSSDRCKPKKCRQECKKSCPV--VKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
IV D C +CPV + K ++E+ CI C CV CP
Sbjct: 37 IVGVDFDLCIADGS-CINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPV 95
Query: 68 EAIQI 72
AI +
Sbjct: 96 AAIDV 100
|
| >1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A Length = 103 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 2e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 50 ISEELCIGCGICVKKCPFEAIQIINLPKDLDKD 82
+ +LCI G C+ CP Q + P +
Sbjct: 40 VDFDLCIADGSCINACPVNVFQWYDTPGHPASE 72
|
| >3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Length = 166 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-07
Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 9 AIVSSDRCK--PKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISE-ELCIGCGICVKKC 65
V +C + C CP + + P AF E E C C C+K C
Sbjct: 2 TYVDPSKCDGCKGGEKTACMYICPND-----LMILDPEEMKAFNQEPEACWECYSCIKIC 56
Query: 66 PFEAIQI 72
P AI
Sbjct: 57 PQGAITA 63
|
| >1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B* Length = 150 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 3e-07
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 9 AIVSSDRCK--PKKCRQECKKSCPVVKTGKLCIEVTPAAKIAF-ISEELCIGCGICVKKC 65
+ V+ ++C R C+ CP + + A+ ++C C CVK C
Sbjct: 3 SFVNPEKCDGCKALERTACEYICPND-----LMTLDKEKMKAYNREPDMCWECYSCVKMC 57
Query: 66 PFEAIQI 72
P AI +
Sbjct: 58 PQGAIDV 64
|
| >1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C* Length = 80 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 3e-07
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 14/74 (18%)
Query: 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTP------AAKIAFISEELCIGCGICV 62
+ D C C Q C ++CP +E+ P + E C+GC C
Sbjct: 3 TVKIYDTCI--GCTQ-CVRACPT-----DVLEMVPWDGCKAGQIASSPRTEDCVGCKRCE 54
Query: 63 KKCPFEAIQIINLP 76
CP + + I
Sbjct: 55 TACPTDFLSIRVYL 68
|
| >1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C* Length = 80 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 4e-05
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 48 AFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNT 91
+ CIGC CV+ CP + ++++ P D K P T
Sbjct: 3 TVKIYDTCIGCTQCVRACPTDVLEMV--PWDGCKAGQIASSPRT 44
|
| >2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A Length = 55 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 4e-07
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFE 68
A V ++ C C C+ CPV I I + CI CG C CP +
Sbjct: 1 AYVINEACI--SCG-ACEPECPVN-----AIS--SGDDRYVIDADTCIDCGACAGVCPVD 50
Query: 69 AI 70
A
Sbjct: 51 AP 52
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 5e-07
Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 64/213 (30%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS 423
L V +GEF + ++ G +G+GK+T + +L L P V + V +
Sbjct: 25 LSVKKGEF----VSII-GASGSGKSTLLYILGLLDAPTE---GKVFLEGKEVD----YTN 72
Query: 424 PKFQSTVR-----------HLLHQKIRDSYTHPQF--VSDVMKPLLI------------E 458
K S +R +L+ P+ + +V+ P+L E
Sbjct: 73 EKELSLLRNRKLGFVFQFHYLI----------PELTALENVIVPMLKMGKPKKEAKERGE 122
Query: 459 QLMDQ----EVVN-----LSGGELQRVALCLCL-GKPADIYLIDEPSAYLDSEQRIVAAK 508
L+ + + ++ LSGGE QRVA+ L +P + DEP+ LDS +
Sbjct: 123 YLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPI-LLFADEPTGNLDSAN---TKR 178
Query: 509 VIKRFI-LHAKKTAFV-VEHDFIMATYLADRVI 539
V+ F+ ++ T+ V V H+ +A R +
Sbjct: 179 VMDIFLKINEGGTSIVMVTHERELAEL-THRTL 210
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 8e-05
Identities = 47/201 (23%), Positives = 78/201 (38%), Gaps = 43/201 (21%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKL-KPNLGR--FNNPPDWQEI-------LTYFRGS 150
+ G+ + ++G +G GKST L IL G L P G+ +E+ L+ R
Sbjct: 28 KKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEG----KEVDYTNEKELSLLRNR 82
Query: 151 EL----QNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVGQVL----DQKDERDMKA-DL 200
+L Q + L IP+ NV + K E + L
Sbjct: 83 KLGFVFQFH-------YL-----------IPELTALENVIVPMLKMGKPKKEAKERGEYL 124
Query: 201 CTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVR 260
++L L + R +LSGGE QR AIA + DEP+ LD + +
Sbjct: 125 LSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 261 SLLRPNSYVIVVEHDLSVLDY 281
+ + +++V H+ + +
Sbjct: 185 KINEGGTSIVMVTHERELAEL 205
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 41/244 (16%)
Query: 355 MVKTQGNFK-LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVE 409
+ K+ G+ + LK + + +++V++G +G+GK+TF+R L L D ++ +++
Sbjct: 30 LKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK 89
Query: 410 IPEFNVSYKPQKISPKFQSTVRHLL-HQKIRDSYTH-PQFVSDVMKP--------LL--- 456
+ N++ +++ FQ +L H + ++ T P V + LL
Sbjct: 90 AKDTNLNKVREEVGMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV 147
Query: 457 -IEQLMDQEVVNLSGGELQRVAL--CLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF 513
++ +LSGG+ QRVA+ L + +P I L DEP++ LD E + +V+
Sbjct: 148 GLKDKAHAYPDSLSGGQAQRVAIARALAM-EP-KIMLFDEPTSALDPE---MVGEVLSVM 202
Query: 514 ILHAKK--TAFVVEHDFIMATYLADRV-------IVYEGQPSVDCVANAPQSLLTGMNLF 564
A + T VV H+ A + DRV I+ EG+P + + + PQ T F
Sbjct: 203 KQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKP--EDLFDRPQHERT--KAF 258
Query: 565 LSHL 568
LS +
Sbjct: 259 LSKV 262
|
| >1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* Length = 421 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFE 68
V D K C C + CP I + E CI CG C+ CP
Sbjct: 26 HFVQIDEAKCIGCDT-CSQYCPTA-----AIFGEMGEPHSIPHIEACINCGQCLTHCPEN 79
Query: 69 AI-----QIINLPKDLDKDTTH 85
AI + + K L
Sbjct: 80 AIYEAQSWVPEVEKKLKDGKVK 101
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 39/197 (19%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
+ K+ G+ + G G GKT+ + M+ G L+P ++ +S+ Q
Sbjct: 56 DINFKIERGQLL---AVA--GSTGAGKTSLLMMIMGELEPSE---GKIKHSG-RISFCSQ 106
Query: 421 K--ISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKP--LL--IEQLM--DQ-EV----VN 467
I T++ + I V+K L I + D + +
Sbjct: 107 NSWI---MPGTIK----ENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 159
Query: 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH--AKKTAFVVE 525
LSGG+ R++L + K AD+YL+D P YLD ++ + + A KT +V
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVL---TEKEIFESCVCKLMANKTRILVT 216
Query: 526 HDFIMATYL--ADRVIV 540
+L AD++++
Sbjct: 217 SKM---EHLKKADKILI 230
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 51/205 (24%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
GQ+L + G+ G GK++ L ++ G+L+P+ G+ G
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK-----------HSGR---------- 100
Query: 161 EDNLKAIIKPQYVDHIP----KAVQGNV-GQVLDQKD-ERDMKA-DLCTDL------DLN 207
+ + ++ N+ G D+ +KA L D+ D
Sbjct: 101 ----IS-----FCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 151
Query: 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV---KQRLKAAQVVRSLLR 264
+ + + LSGG+ R ++A ++A++Y+ D P YLDV K+ + V L+
Sbjct: 152 VLGEGGI-TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE--SCVCKLMA 208
Query: 265 PNSYVIVVEHDLSVLDYLSDFICCL 289
N I+V + L +D I L
Sbjct: 209 -NKTRILVTSKMEHLKK-ADKILIL 231
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI--LHAKKTAFV 523
+ LSGG+ R++L + K AD+YL+D P YLD ++ + + L A KT +
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL---TEKEIFESCVCKLMANKTRIL 185
Query: 524 VEHDFIMATYL--ADRVIV 540
V +L AD++++
Sbjct: 186 VTSKM---EHLKKADKILI 201
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 45/206 (21%), Positives = 81/206 (39%), Gaps = 52/206 (25%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
GQ+L + G+ G GK++ L ++ G+L+P+ G+ G
Sbjct: 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK-----------HSGR---------- 70
Query: 161 EDNLKAIIKPQYVDHIP----KAVQGNV--GQVLDQKD-ERDMKA-DLCTDL------DL 206
+ + ++ N+ G D+ +KA L D+ D
Sbjct: 71 ----IS-----FCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN 121
Query: 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV---KQRLKAAQVVRSLL 263
+ + + LSGG+ R ++A ++A++Y+ D P YLDV K+ + V L+
Sbjct: 122 IVLGEGGI-TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE--SCVCKLM 178
Query: 264 RPNSYVIVVEHDLSVLDYLSDFICCL 289
N I+V + L +D I L
Sbjct: 179 A-NKTRILVTSKMEHLKK-ADKILIL 202
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEP-SAYLDSEQRIVAAKVIKRFILH----AKKT 520
VNLSGG+ QRV+L + ADIYL D+P SA +D+ V + + I KT
Sbjct: 126 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSA-VDAH---VGKHIFENVIGPKGMLKNKT 181
Query: 521 AFVVEHDFIMATYL--ADRVIV 540
+V H +YL D +IV
Sbjct: 182 RILVTHSM---SYLPQVDVIIV 200
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 66/235 (28%)
Query: 81 KDTTHRYGPN-TFKLHR--LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP 137
++ T + + L+ +P G ++ +VG G GKS+ L L ++ G
Sbjct: 7 RNATFTWARSDPPTLNGITFSIP-EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA-- 63
Query: 138 PDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIP----KAVQGNV--GQVLDQK 191
+GS A YV +++ N+ G L++
Sbjct: 64 ---------IKGS--------------VA-----YVPQQAWIQNDSLRENILFGCQLEEP 95
Query: 192 D-ERDMKA-DLCTDL------DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEP 243
++A L DL D ++ ++ V +LSGG+ QR ++A NA+IY+FD+P
Sbjct: 96 YYRSVIQACALLPDLEILPSGDRTEIGEKGV-NLSGGQKQRVSLARAVYSNADIYLFDDP 154
Query: 244 SSYLDVKQRLKAAQVVRSL----LRPNSY-----VIVVEHDLSVLDYLSDFICCL 289
S +D A V + + + P I+V H +S L D I +
Sbjct: 155 LSAVD-------AHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ-VDVIIVM 201
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 211 DRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN 266
D VG+ LSGGE QR AIA +++ +I +FDE +S LD K Q LR N
Sbjct: 146 DTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE-YLFQKAVEDLRKN 204
Query: 267 SYVIVVEHDLS 277
+I++ H LS
Sbjct: 205 RTLIIIAHRLS 215
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 462 DQEVVNLSGGELQRVALCLCL-------GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI 514
+ NLSGGE VAL L L G + ++DEP+ YLD +R A++ ++
Sbjct: 275 VLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK-- 332
Query: 515 LHAKKTAFVVEHD 527
+ + ++ H
Sbjct: 333 VKSIPQMIIITHH 345
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 9/132 (6%)
Query: 151 ELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI 210
L + +A ++ +YV I K + D
Sbjct: 216 YLDKVRRIFGRNGFQAYLREKYVPLIQKYLN-EAFSEFDLPYSFVELTKDFEVRVHAPNG 274
Query: 211 DRNVGDLSGGELQRFAIA-------VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263
+ +LSGGE A++ + E + DEP+ YLD +R K A++ R +
Sbjct: 275 VLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK-V 333
Query: 264 RPNSYVIVVEHD 275
+ +I++ H
Sbjct: 334 KSIPQMIIITHH 345
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 69/241 (28%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV----------- 408
L+ G+ +I ++G +G+GK+TF+R + L KP V ++
Sbjct: 27 LQARAGD-----VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 409 EIPEFNVSYKPQKISPKFQS-------TV--------RHLLHQKIRDSYTHPQFVSDVMK 453
+ + +++ FQ TV +L D+ +K
Sbjct: 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARER------ALK 135
Query: 454 PL----LIEQLMDQEVVNLSGGELQRVA----LCLCLGKPADIYLIDEP-SAYLDSEQRI 504
L + E+ + V+LSGG+ QRV+ L + +P D+ L DEP SA LD E +
Sbjct: 136 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM---EP-DVLLFDEPTSA-LDPE--L 188
Query: 505 VAA--KVIKRFILHAKKTAFVVEHDFIMATYLADRV-------IVYEGQPSVDCVANAPQ 555
V +++++ + KT VV H+ A +++ V I EG P + V PQ
Sbjct: 189 VGEVLRIMQQ-LAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP--EQVFGNPQ 245
Query: 556 S 556
S
Sbjct: 246 S 246
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 2e-05
Identities = 37/170 (21%), Positives = 61/170 (35%), Gaps = 58/170 (34%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNY----- 155
GQ++ L+G NG GK+T L +AG ++ G +I+ F G ++ N
Sbjct: 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG---------KII--FNGQDITNKPAHVI 78
Query: 156 --------------FTRI-LEDNLK--AIIKPQYVDHIPKAVQGNVGQVLDQ----KDER 194
F + + +NL A Y + ++ ++ + K+
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGA-----YNRKDKEGIKRDLEWIFSLFPRLKERL 133
Query: 195 DMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPS 244
G LSGGE Q AI + ++ M DEPS
Sbjct: 134 KQLG----------------GTLSGGEQQMLAIGRALMSRPKLLMMDEPS 167
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 4e-05
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 38/202 (18%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD--SVEDSDVEIPEFNVSYKPQK 421
LKV G+ I+ ++G NG GKTT + +AGL++ + + +I +
Sbjct: 27 LKVPRGQ-----IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI----TNKPAHV 77
Query: 422 ISPKFQSTV---RHLL-HQKIRD-----SYTHP---QFVSDVMK-----PLLIEQLMDQE 464
I+ + V R + + + +Y D+ P L E+L Q
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERL-KQL 136
Query: 465 VVNLSGGELQRVALCLCL-GKPADIYLIDEPSAYLDSEQRIVAA--KVIKRFILHAKKTA 521
LSGGE Q +A+ L +P + ++DEPS L +V+ +VI++ ++ + T
Sbjct: 137 GGTLSGGEQQMLAIGRALMSRP-KLLMMDEPSLGLAP--ILVSEVFEVIQK--INQEGTT 191
Query: 522 -FVVEHDFIMATYLADRVIVYE 542
+VE + + A +A V E
Sbjct: 192 ILLVEQNALGALKVAHYGYVLE 213
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 41/204 (20%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-SVEDSDVEIPEFNVSYKP 419
N + G+ + +LG G+GK+T + LL + ++ V +
Sbjct: 39 NISFSISPGQR-----VGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWR 93
Query: 420 QKISPKFQSTVRHLLHQKIR------DSYTHPQFVSDVMKPLLIEQL----------MDQ 463
+ Q + R +++ ++ K L +D
Sbjct: 94 KAFGVIPQKVF--IFSGTFRKNLDPNAAHS----DQEIWKVADEVGLRSVIEQFPGKLDF 147
Query: 464 EVV----NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVI-KRFILHAK 518
+V LS G Q + L + A I L+DEPSA+LD + + + + F A
Sbjct: 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF---AD 204
Query: 519 KTAFVVEH--DFIMATYLADRVIV 540
T + E + ++ D+ +V
Sbjct: 205 CTVILCEARIEAML---ECDQFLV 225
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 5e-05
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 17/77 (22%)
Query: 211 DRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD------VKQRLKAAQVVR 260
+ VG+ LSGG+ QR AIA V N +I +FDE +S LD + + + R
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR 195
Query: 261 SLLRPNSYVIVVEHDLS 277
+ VI++ H LS
Sbjct: 196 T-------VIIIAHRLS 205
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 25/97 (25%)
Query: 211 DRNVGDLSGGELQRFAIA------VVAVQNAEIYMFDEPSSYL---DVKQRLKAAQVVRS 261
DR+ LS GELQR +A + V +Y+ DEPS+ L D + L A + ++
Sbjct: 374 DRSTPTLSPGELQRLRLATQLYSNLFGV----VYVLDEPSAGLHPADTEALLSALENLKR 429
Query: 262 LLRPNSYVIVVEHDLSVL---DYLSDFICCLYGKPGA 295
NS + VVEHDL V+ D+L D G P A
Sbjct: 430 G--GNS-LFVVEHDLDVIRRADWLVDV-----G-PEA 457
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
LSGGE QR AIA ++ I + DE +S LD
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALD 222
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 9e-05
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 9/80 (11%)
Query: 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS--EQRIVAAKVIKRFILHAKKTAFV 523
+ LSGGE QRVA+ + K I L+DE ++ LD+ E+ I A+ + + + A +T V
Sbjct: 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQAS--LAK--VCANRTTIV 244
Query: 524 VEHDFIMATYL-ADRVIVYE 542
V H ++T + AD+++V +
Sbjct: 245 VAHR--LSTVVNADQILVIK 262
|
| >3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} PDB: 1blu_A 3exy_A Length = 82 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 1e-04
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 48 AFISEELCIGCGICVKKCPFEAI 70
A + + CI C +C +CP AI
Sbjct: 1 ALMITDECINCDVCEPECPNGAI 23
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 17/77 (22%)
Query: 211 DRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD------VKQRLKAAQVVR 260
+ VG+ +SGG+ QR AIA ++N +I M DE ++ LD V++ L + R
Sbjct: 130 NTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGR 189
Query: 261 SLLRPNSYVIVVEHDLS 277
+ +V+ H LS
Sbjct: 190 T-------TLVIAHRLS 199
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 205 DLNQVIDRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVR 260
L D VG+ LSGG+ QR AIA V+N +I + DE +S LD + A V
Sbjct: 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE---AVVQA 567
Query: 261 SL--LRPNSYVIVVEHDLS 277
+L R IV+ H LS
Sbjct: 568 ALDKAREGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 17/77 (22%)
Query: 211 DRNVGD----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD------VKQRLKAAQVVR 260
+ VGD LSGG+ QR AIA V+ I + DE +S LD V++ L A+ R
Sbjct: 1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGR 1221
Query: 261 SLLRPNSYVIVVEHDLS 277
+ IV+ H LS
Sbjct: 1222 T-------CIVIAHRLS 1231
|
| >3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A* Length = 574 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 14 DRCKPKKCRQECKKSCPVV-------KTGKLCIEVTPAAKIAFISEELCIGCGICVKKCP 66
+C C + C +C K + A + C+ CG C+ CP
Sbjct: 145 TKCL--LCGR-CVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACP 201
Query: 67 FEAIQ 71
A+
Sbjct: 202 VAALS 206
|
| >1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B* Length = 294 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 21/65 (32%)
Query: 18 PKKCRQ----ECKKSCPVV------KTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
C C K+CP G I E CIGCG C+ CPF
Sbjct: 97 KDGCMHCEDPGCLKACPSAGAIIQYANG-----------IVDFQSENCIGCGYCIAGCPF 145
Query: 68 EAIQI 72
++
Sbjct: 146 NIPRL 150
|
| >1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5 Length = 214 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 18/66 (27%)
Query: 18 PKKCRQ----ECKKSCPVVKTGKL-------CIEVTPAAKIAFISEELCIGCGICVKKCP 66
P +CR CK + + + C+ TP + + CP
Sbjct: 69 PDQCRHCIAPPCKATADMEDESAIIHDDATGCVLFTP-------KTKDLEDYESVISACP 121
Query: 67 FEAIQI 72
++ +
Sbjct: 122 YDVPRK 127
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 468 LSGGELQRVALCLCL-GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK--KTAFVV 524
LSGG+ QRVA+ L P I L D+P+ LDS+ +++K+ L+ + KT VV
Sbjct: 146 LSGGQQQRVAIARALANNPP-IILADQPTWALDSKTGEKIMQLLKK--LNEEDGKTVVVV 202
Query: 525 EHDFIMATYLADRVI 539
HD +A + +R+I
Sbjct: 203 THDINVARF-GERII 216
|
| >1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A Length = 64 | Back alignment and structure |
|---|
Score = 37.0 bits (86), Expect = 8e-04
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 45 AKIAFISEELCIGCGICVKKCP 66
A+ ++ ++ CI C CV+ P
Sbjct: 1 ARKFYVDQDECIACESCVEIAP 22
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 605 | |||
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.98 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.98 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.98 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.98 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.98 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.97 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.97 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.94 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.92 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.92 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.92 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.92 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.92 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.92 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.9 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.88 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.88 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.87 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.86 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.86 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.85 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.85 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.84 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.84 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.82 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.82 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.82 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.79 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.79 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.78 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.78 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.78 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.78 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.78 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.77 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.75 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.75 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.74 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.74 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.73 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.73 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.72 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.71 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.71 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.7 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.7 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.69 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.69 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.69 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.68 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.68 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.68 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.68 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.68 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.67 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.67 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.67 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.66 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.66 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.65 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.65 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.65 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.65 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.63 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.63 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.62 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.61 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.61 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.61 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.6 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.6 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.59 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.59 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.58 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.57 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.57 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.56 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.56 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.55 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.54 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.53 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.53 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.5 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.48 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.47 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.47 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.47 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.46 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.46 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.45 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.44 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.44 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.43 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.43 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.42 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.42 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.4 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.39 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.38 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.37 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.37 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.36 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.36 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.34 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.34 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.31 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.3 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.3 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.29 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.28 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.28 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.28 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.28 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.25 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.25 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.23 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.22 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.21 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.2 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.2 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.19 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.18 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.18 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.18 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.17 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.17 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.16 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.14 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.13 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.11 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.11 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.1 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.09 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.08 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.07 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.06 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.06 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.05 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.05 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.04 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.03 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.03 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.01 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.0 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.0 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.99 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.97 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.97 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.97 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.96 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.95 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.94 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.93 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.91 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 98.88 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.88 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.87 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.87 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.86 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.86 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.85 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.82 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.82 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.81 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.79 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.75 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.73 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.72 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.71 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.71 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.67 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.67 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.63 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.6 | |
| 7fd1_A | 106 | FD1, protein (7-Fe ferredoxin I); electron transpo | 98.6 | |
| 1bc6_A | 77 | 7-Fe ferredoxin; electron transport, iron-sulfur; | 98.59 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.58 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.52 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.51 | |
| 1h98_A | 78 | Ferredoxin; electron transport, thermophilic, iron | 98.5 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.5 | |
| 3eun_A | 82 | Ferredoxin; electron transport, [4Fe-4S] cluster, | 98.49 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.49 | |
| 2v2k_A | 105 | Ferredoxin; iron, transport, iron-sulfur, mycobact | 98.46 | |
| 1jnr_B | 150 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.46 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.45 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.42 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.42 | |
| 3gyx_B | 166 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.4 | |
| 1dwl_A | 59 | Ferredoxin I; electron transfer, model, heteronucl | 98.39 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.38 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.36 | |
| 2fdn_A | 55 | Ferredoxin; electron transport, iron-sulfur, 4Fe-4 | 98.35 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.33 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.33 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.31 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 98.3 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.3 | |
| 1xer_A | 103 | Ferredoxin; electron transport, iron-sulfur, dupli | 98.28 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.28 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.28 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.27 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.27 | |
| 1dax_A | 64 | Ferredoxin I; electron transport, electron-transfe | 98.26 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.26 | |
| 1rgv_A | 80 | Ferredoxin; electron transport; 2.90A {Thauera aro | 98.25 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.25 | |
| 1iqz_A | 81 | Ferredoxin; iron-sulfer protein, ultlahigh resolut | 98.24 | |
| 2fgo_A | 82 | Ferredoxin; allochromatium vinosum, [4Fe-4S] clust | 98.24 | |
| 1f2g_A | 58 | Ferredoxin II; electron transport, FDII desulfovib | 98.23 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.22 | |
| 2zvs_A | 85 | Uncharacterized ferredoxin-like protein YFHL; elec | 98.22 | |
| 1rof_A | 60 | Ferredoxin; electron transport, iron-sulfur; NMR { | 98.21 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.21 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.2 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.2 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.17 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.17 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.17 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.17 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.17 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.15 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.13 | |
| 1jb0_C | 80 | Photosystem I iron-sulfur center; membrane protein | 98.11 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.1 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.1 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.09 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.09 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.09 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.08 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.07 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.06 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.06 | |
| 1sj1_A | 66 | Ferredoxin; thermostability, iron-sulfur cluster, | 98.05 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.04 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.04 | |
| 3i9v_9 | 182 | NADH-quinone oxidoreductase subunit 9; electron tr | 98.03 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.0 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.99 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.99 | |
| 1hfe_L | 421 | Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg | 97.97 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.97 | |
| 1q16_B | 512 | Respiratory nitrate reductase 1 beta chain; membra | 97.97 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.96 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.95 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.92 | |
| 3mm5_B | 366 | Sulfite reductase, dissimilatory-type subunit BET; | 97.92 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.9 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.9 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.88 | |
| 2ivf_B | 352 | Ethylbenzene dehydrogenase beta-subunit; anaerobic | 97.87 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.86 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.85 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.84 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.83 | |
| 2vpz_B | 195 | NRFC protein; oxidoreductase, molybdopterin guanin | 97.81 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.8 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.8 | |
| 3or1_B | 386 | Sulfite reductase beta; dissimilatory sulfite redu | 97.8 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.79 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.77 | |
| 1kqf_B | 294 | FDH-N beta S, formate dehydrogenase, nitrate-induc | 97.77 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.76 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.74 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.71 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.71 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.7 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.69 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.68 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.68 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.68 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.68 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.68 | |
| 3c8y_A | 574 | Iron hydrogenase 1; dithiomethylether, H-cluster, | 97.67 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.64 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.64 | |
| 3mm5_A | 418 | Sulfite reductase, dissimilatory-type subunit ALP; | 97.63 | |
| 1h0h_B | 214 | Formate dehydrogenase (small subunit); tungsten se | 97.63 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 97.63 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.63 | |
| 1ti6_B | 274 | Pyrogallol hydroxytransferase small subunit; molyb | 97.63 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.63 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.63 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.62 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.62 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.6 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.59 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.58 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.57 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.55 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 97.54 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.54 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.53 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.53 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.51 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.5 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.5 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.5 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 97.49 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.48 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.48 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.48 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.45 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.45 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.45 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.44 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.42 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.4 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.38 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.37 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.37 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.35 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.34 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.32 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.31 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.3 | |
| 3eun_A | 82 | Ferredoxin; electron transport, [4Fe-4S] cluster, | 97.3 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.23 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.22 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.22 | |
| 2fgo_A | 82 | Ferredoxin; allochromatium vinosum, [4Fe-4S] clust | 97.19 | |
| 2zvs_A | 85 | Uncharacterized ferredoxin-like protein YFHL; elec | 97.19 | |
| 1rgv_A | 80 | Ferredoxin; electron transport; 2.90A {Thauera aro | 97.18 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.17 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.13 | |
| 1ti6_B | 274 | Pyrogallol hydroxytransferase small subunit; molyb | 97.13 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.11 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.09 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.07 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.05 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.04 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 97.03 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.02 | |
| 1dax_A | 64 | Ferredoxin I; electron transport, electron-transfe | 97.01 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.0 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.98 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.98 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.97 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.97 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.97 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.96 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.95 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.94 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.93 | |
| 3i9v_3 | 783 | NADH-quinone oxidoreductase subunit 3; electron tr | 96.93 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.91 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.9 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.9 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.9 | |
| 2ivf_B | 352 | Ethylbenzene dehydrogenase beta-subunit; anaerobic | 96.89 | |
| 1jb0_C | 80 | Photosystem I iron-sulfur center; membrane protein | 96.89 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.87 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.87 | |
| 1h0h_B | 214 | Formate dehydrogenase (small subunit); tungsten se | 96.86 | |
| 3or1_A | 437 | Sulfite reductase alpha; dissimilatory sulfite red | 96.84 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.83 | |
| 1iqz_A | 81 | Ferredoxin; iron-sulfer protein, ultlahigh resolut | 96.82 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.8 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.79 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.75 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.74 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.74 | |
| 1kqf_B | 294 | FDH-N beta S, formate dehydrogenase, nitrate-induc | 96.72 | |
| 2vpz_B | 195 | NRFC protein; oxidoreductase, molybdopterin guanin | 96.7 | |
| 1h98_A | 78 | Ferredoxin; electron transport, thermophilic, iron | 96.68 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.68 | |
| 1xer_A | 103 | Ferredoxin; electron transport, iron-sulfur, dupli | 96.68 | |
| 2fdn_A | 55 | Ferredoxin; electron transport, iron-sulfur, 4Fe-4 | 96.67 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.67 | |
| 1bc6_A | 77 | 7-Fe ferredoxin; electron transport, iron-sulfur; | 96.67 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.67 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.66 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.66 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.66 | |
| 1dwl_A | 59 | Ferredoxin I; electron transfer, model, heteronucl | 96.65 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.65 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.65 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.64 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.64 | |
| 1q16_B | 512 | Respiratory nitrate reductase 1 beta chain; membra | 96.63 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.62 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.61 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.61 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.58 | |
| 1sj1_A | 66 | Ferredoxin; thermostability, iron-sulfur cluster, | 96.57 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.48 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.48 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.46 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.45 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.45 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.45 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.45 |
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-148 Score=1248.18 Aligned_cols=600 Identities=69% Similarity=1.164 Sum_probs=535.2
Q ss_pred CCCCceEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecCCcccC
Q 040300 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLD 80 (605)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~~~~ 80 (605)
|++++|||||||+|+|||+||++||++|||+||||++||++++++++|+|||+||||||||||||||+||+|+|||++|+
T Consensus 1 ~~~~~~~~~~~~~~~c~~~~~~~~c~~~cp~~~~~~~~~~~~~~~~~~~i~~~~c~~~~~~~~~cp~~~i~i~nl~~~~~ 80 (608)
T 3j16_B 1 MSDKNSRIAIVSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFDAIQIINLPTNLE 80 (608)
T ss_dssp CCCCCEEEEEECSSSCCHHHHCSHHHHHCHHHHHTCCSEEEETTTTEEEECTTTCCCCCHHHHHCSSCCEEEEEESSSSS
T ss_pred CCCccceEEEEeccccCccccccchhhcCCCccCCceEEEEcCCCCceEEehhhccccccccccCCccceEEecCChhhc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
++++|+|+.++|.+++++.+++||++||+||||||||||+|+|+|+++|+.|++...+.|...+.++.|.+++.++....
T Consensus 81 ~~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TTEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999988888998888999999999887766
Q ss_pred HHHHHHhhcccccccchhhhhc---hhhhhcCc--hHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQG---NVGQVLDQ--KDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~---~v~~~l~~--~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
...+...+.+|+++.++..+.+ ++.+.+.. ....++++++++.+||.+.+++++.+|||||||||+||+||+++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p 240 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEA 240 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCC
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCC
Confidence 5555555677888777654433 23322211 112367889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcC
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAG 315 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g 315 (605)
++||||||||+||+.++..++++|+++.++|+|||+||||++++..+||+|++|+++++.|+..+.|.+.+++++.++.+
T Consensus 241 ~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (608)
T 3j16_B 241 DVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLDG 320 (608)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHHHHHHHHHT
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCchhHHHHHHHhhcc
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999888
Q ss_pred CCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH
Q 040300 316 FVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA 395 (605)
Q Consensus 316 ~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~ 395 (605)
+.+.++++++.....++............... .++|++..+.+++++|++.+|++.+||+++|+||||||||||+|+|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~ 399 (608)
T 3j16_B 321 HIPAENLRFRTEALQFRIADATEDLQNDSASR-AFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLA 399 (608)
T ss_dssp EETTTTEECSSSCCCCCCSSSSCCCCCCSSSS-CCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHH
T ss_pred ccchhhhccccccccccccccccceeeeccce-eEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHh
Confidence 88877777766554444322211101001223 77888776778999999999999999999999999999999999999
Q ss_pred cCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHH
Q 040300 396 GLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQR 475 (605)
Q Consensus 396 Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QR 475 (605)
|+++|++|+. .....++|+||+....+..||.+++.......+.....+.++++.+++.++.++++.+||||||||
T Consensus 400 Gl~~p~~G~~----~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQR 475 (608)
T 3j16_B 400 GALKPDEGQD----IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQR 475 (608)
T ss_dssp TSSCCSBCCC----CCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHH
T ss_pred cCCCCCCCcC----ccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHH
Confidence 9999999963 345679999999877778899998754433334456678899999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChh
Q 040300 476 VALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQ 555 (605)
Q Consensus 476 vaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~ 555 (605)
|+|||||+++|+||||||||+|||+.++..++++|+++..+.|+|||+||||++++..+||||++|+|+++...++++|+
T Consensus 476 v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 476 VAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPE 555 (608)
T ss_dssp HHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCE
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChH
Confidence 99999999999999999999999999999999999998766699999999999999999999999998777778899999
Q ss_pred hhhccccccceecceEEEecCCCCcceeecCCCCCcHhhhhcCCccccCC
Q 040300 556 SLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYLDD 605 (605)
Q Consensus 556 ~~~~~~~~~l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~~~ 605 (605)
++++++|.|++.++++|++||.++||||||++|++|||||++|+|||+|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~s~~d~~q~~~~~~~~~~~ 605 (608)
T 3j16_B 556 SLLTGCNRFLKNLNVTFRRDPNSFRPRINKLDSQMDKEQKSSGNYFFLDN 605 (608)
T ss_dssp EHHHHHHHHHHHHTCCBCCCTTTCCCCBCCSSCSHHHHHHTTTCSCCCSS
T ss_pred HHhhhhhHHHHhcCceeecCCCCCCceEeCCCccccHhHHhcCCeEeecc
Confidence 99999999999999999999999999999999999999999999999985
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-137 Score=1164.43 Aligned_cols=591 Identities=47% Similarity=0.824 Sum_probs=503.8
Q ss_pred CCceEEEEEeCCCCCccccc-chhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecCCcccCC
Q 040300 3 DRLTRIAIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDK 81 (605)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~~~~~ 81 (605)
|++|||||||+|+|||+||+ +||++|||+||||++||++++++++|+|||+||||||||||||||+||+|+|||++|++
T Consensus 16 ~~~~~~~~~~~~~c~p~~c~~~~c~~~cp~~~~~~~~~~~~~~~~~~~i~e~~c~gc~~~~~~~p~~~i~i~~l~~~~~~ 95 (607)
T 3bk7_A 16 VRKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAISIVNLPEQLDE 95 (607)
T ss_dssp CCCEEEEECCGGGCCTTTSSSCHHHHHCHHHHTTCCSEEEETTTTEEEECTTTCCCCCHHHHHCSSCCCEEEEECTTGGG
T ss_pred cccceEEEeeccccCCCCCChhhHhhhCCCCcCCceEEEEcCCCCcceeeecccCccccccCCCCcceEEEecCCccccC
Confidence 68999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
+++++||.+.+.+++++.+.+||++||+|+||||||||+|+|+|+++|+.|++ .+.|..++..+.|.++++++.....
T Consensus 96 ~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~--~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 96 DCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED--NDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp SEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT--CCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc--ccccchhhheeCCEehhhhhhhhhh
Confidence 99999987667899998779999999999999999999999999999999984 3456555567788888766543322
Q ss_pred HHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFD 241 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllD 241 (605)
......+.+|++...+..+.+++.+.+.....+++++++++.+||++.+++++.+|||||+|||+||+||+++|++||||
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLD 253 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFD 253 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred hhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 22333455677665554333345444322222346788999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCCCcc
Q 040300 242 EPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTEN 321 (605)
Q Consensus 242 EPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~~e~ 321 (605)
||||+||+.++.+++++|+++.++|.|||+||||++++..+||+|++|+++++.||.+..+.+.+++++.++.++.+.++
T Consensus 254 EPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~ 333 (607)
T 3bk7_A 254 EPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDEN 333 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHHHHHHHHHTEETTTT
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHHHHHHHHHhhcchhhh
Confidence 99999999999999999999987799999999999999999999999999999999988888888888888888776666
Q ss_pred cccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC
Q 040300 322 LRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD 401 (605)
Q Consensus 322 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~ 401 (605)
.+++.....+........ ..... .+.+.+.++.+++++|++.++++.+||+++|+||||||||||+|+|+|+++|+
T Consensus 334 ~~~~~~~~~~~~~~~~~~---~~~~~-~l~~~~l~~~~~~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~ 409 (607)
T 3bk7_A 334 VRFRPYEIRFTKLSERVD---VERET-LVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 409 (607)
T ss_dssp EECCSSCCCCCCSTTSCC---CCCCE-EEEECCEEEECSSCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred hhccccccccccCCCccc---ccCce-EEEEeceEEEecceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 655544333322211110 00112 45666666667778888888888999999999999999999999999999999
Q ss_pred eeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHH
Q 040300 402 SVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481 (605)
Q Consensus 402 ~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~a 481 (605)
+|++. . ...++|+||+....+..||.+++.......+.....+.++++.+++.++.++++.+|||||||||+||||
T Consensus 410 ~G~I~---~-~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAra 485 (607)
T 3bk7_A 410 EGKVE---W-DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 485 (607)
T ss_dssp BSCCC---C-CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred ceEEE---E-eeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99874 2 4579999999766677899887643201111234567889999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|+++|+||||||||+|||+.++..++++|+++.++.|+|||+||||++++..+|||+++|+++++.....++|+++++++
T Consensus 486 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~~ 565 (607)
T 3bk7_A 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGM 565 (607)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHH
T ss_pred HHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhhH
Confidence 99999999999999999999999999999998766799999999999999999999999997666666789999999988
Q ss_pred cccceecceEEEecCCCCcceeecCCCCCcHhhhhcCCcccc
Q 040300 562 NLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYL 603 (605)
Q Consensus 562 ~~~l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~ 603 (605)
+.|+..++++++++|.++||++||+||++|||||+.|+|||+
T Consensus 566 ~~~~~~~~~~~~~~~~~~~p~~~~~~s~~d~~q~~~~~~~~~ 607 (607)
T 3bk7_A 566 NRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYYA 607 (607)
T ss_dssp HHHHTTTTCCEEECTTTCCEEECCTTCHHHHHHHHTTCCBCC
T ss_pred HHHHHhCCeEEEecCCCCcceecCCcchhHHHHHhcCCcccC
Confidence 888888889999999999999999999999999999999996
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-104 Score=883.59 Aligned_cols=522 Identities=41% Similarity=0.733 Sum_probs=443.8
Q ss_pred cCCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 79 LDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 79 ~~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++++||||.|+|+|++||++++||++||+||||||||||+|+|+|+++|+.|++...+.|......+.|.+++.++..
T Consensus 1 ~~~~~~~~~~~~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 1 MEGEVIHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp -CCCEEEESSTTSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCCCCceecCCCceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999998777778887788999988877655
Q ss_pred HHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEE
Q 040300 159 ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIY 238 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vl 238 (605)
...........+|+++..+....+++.+.+.....+++++++++.+++.+++++++.+|||||+|||+||+||+++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 43333333445677766655444445444433333456788999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCC
Q 040300 239 MFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVP 318 (605)
Q Consensus 239 llDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~ 318 (605)
|||||||+||+.++.+++++|+++.+ |+|||+||||++++..+||+|++|+++++.||....++..+.+++.++.++.+
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 239 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLP 239 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHTEET
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCcccccccchhhhHHHHHHHHHhhhch
Confidence 99999999999999999999999976 99999999999999999999999999999999888888888888889888888
Q ss_pred CcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 319 TENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 319 ~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++++++.....+................ .+.+.+..+.+++++|++.++++++||++||+||||||||||+|+|+|++
T Consensus 240 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 240 AENMKIRPDEIKFMLKEVSDLDLSKDLKT-KMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTTEECSSSCCCCSCC----------CCE-EEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred hhhhhccchhhhccccccccccccccccc-eEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 77776665443332211111000001112 56677777778888999888899999999999999999999999999999
Q ss_pred CCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCC-CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHH
Q 040300 399 KPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSY-THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVA 477 (605)
Q Consensus 399 ~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRva 477 (605)
+|++|++. .....++|+||+....+..||.+++........ .....+.++++.+++.+..++++.+|||||||||+
T Consensus 319 ~p~~G~i~---~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~ 395 (538)
T 3ozx_A 319 TADEGSVT---PEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLY 395 (538)
T ss_dssp CCSBCCEE---SSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHH
T ss_pred CCCCcEEE---ECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHH
Confidence 99999974 345579999999776677899998754211111 23356788999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 478 LCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 478 iA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
|||||+++|+||||||||+|||+.++..++++|+++.++.|+|||+||||++++..+||||++|+++++.....++|.++
T Consensus 396 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 99999999999999999999999999999999999987779999999999999999999999999888777888999999
Q ss_pred hccccccceecceEEEecCCCCcceeecCCCCCcHhhhhcCCccccCC
Q 040300 558 LTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYLDD 605 (605)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~~~ 605 (605)
.+.++.|++.++++|++||.+++|++|+++|++||+||+.|+|||+++
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (538)
T 3ozx_A 476 KTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYYSMVL 523 (538)
T ss_dssp HHHHHHHHHHHTCEEEECTTTCCEEEECTTSHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHhhcceEEEecCCCCCeEEecCccHHHHHHHhcCceeEeec
Confidence 999999999999999999999999999999999999999999999864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-98 Score=833.19 Aligned_cols=527 Identities=46% Similarity=0.779 Sum_probs=404.3
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
..|++.|||++++++++++||...+.+.+++.+.+||++||+|+||||||||+|+|+|+++|+.|++ ...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~--~~~~~~~~~~~ 89 (538)
T 1yqt_A 12 SGLVPRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD--NDSWDGVIRAF 89 (538)
T ss_dssp ------------CCCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT--CCSHHHHHHHT
T ss_pred CCceeccCChhHhcCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc--CcchhhhHHhh
Confidence 4689999999999999999987656788888678999999999999999999999999999999984 22333333456
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAI 227 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaI 227 (605)
.|..++.++...........+.+|++...+....+++.+.+.....++++.++++.+||.+.+++++.+|||||||||+|
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~i 169 (538)
T 1yqt_A 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAI 169 (538)
T ss_dssp TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHH
Confidence 77776654322211112223445555444432222343333222223467889999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHH
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVRE 307 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~ 307 (605)
|+||+.+|++||||||||+||+.++.++.++|+++.++|+|||+||||++++..+||+|++|+++.+.|+.+..+++.+.
T Consensus 170 AraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~ 249 (538)
T 1yqt_A 170 AAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN 249 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHH
Confidence 99999999999999999999999999999999999878999999999999999999999999988888887777776665
Q ss_pred HHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCH
Q 040300 308 GINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGK 387 (605)
Q Consensus 308 ~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGK 387 (605)
.+..+..++.+.+..+.+.....+........ ..... .+.+.+..+.+++++|++.+.++++||++||+|||||||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~l~~~~l~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGK 325 (538)
T 1yqt_A 250 GINEFLRGYLKDENVRFRPYEIKFTKTGERVE---IERET-LVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGK 325 (538)
T ss_dssp HHHHHHHTEETTTTEECSSSCCCCCCSSGGGS---SCCCE-EEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSH
T ss_pred HHHHHhhhccchhhhcccccccccccCCcccc---cCCCe-EEEEeeEEEEECCEEEEeCccccCCCCEEEEECCCCCCH
Confidence 55555544333222221211111111110000 00111 355555555566778888888888889999999999999
Q ss_pred HHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCc
Q 040300 388 TTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVN 467 (605)
Q Consensus 388 STLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 467 (605)
|||+|+|+|+++|++|++. . ...++|+||+....+..||.+++.......+.....+.++++.+++.+..++++.+
T Consensus 326 STLlk~l~Gl~~p~~G~i~---~-~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 401 (538)
T 1yqt_A 326 TTFVKMLAGVEEPTEGKIE---W-DLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNE 401 (538)
T ss_dssp HHHHHHHHTSSCCSBCCCC---C-CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGG
T ss_pred HHHHHHHhCCCCCCCeEEE---E-CceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhh
Confidence 9999999999999999974 2 45699999997666678998776432011112345678899999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcce
Q 040300 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSV 547 (605)
Q Consensus 468 LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~ 547 (605)
|||||||||+|||||+++|++|||||||+|||+.++..++++|+++.++.|.|||+||||++++..+||||++|+++.+.
T Consensus 402 LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~ 481 (538)
T 1yqt_A 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGK 481 (538)
T ss_dssp CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcce
Confidence 99999999999999999999999999999999999999999999987556999999999999999999999999975555
Q ss_pred eeecCChhhhhccccccceecceEEEecCCCCcceeecCCCCCcHhhhhcCCccccC
Q 040300 548 DCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYLD 604 (605)
Q Consensus 548 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~~ 604 (605)
....++|+++++.++.++..++++++++|.+++|++|+++|++|||||+.|+|||++
T Consensus 482 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (538)
T 1yqt_A 482 YGRALPPMGMREGMNRFLASIGITFRRDPDTGRPRANKEGSVKDREQKEKGEYYYIA 538 (538)
T ss_dssp EEEECCCEEHHHHHHHHHHTTTCCEEECTTTCCEEECCTTCHHHHHHHHHTCCBCCC
T ss_pred EeecCCHHHHHhhHHHHHhhcCeEEEecCCCCceeeccccchhhHHHHhhcCceecC
Confidence 566799999998766566667778888888999999999999999999999999985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-65 Score=596.25 Aligned_cols=416 Identities=20% Similarity=0.307 Sum_probs=281.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++||.. ..|.+++ .+.+|+++||+|+||||||||+|+|+| |.+.+.+..... .
T Consensus 440 ~ls~~yg~~-~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i~g~~~~~~~-~--------------- 496 (986)
T 2iw3_A 440 EFSLAYGAK-ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQVDGFPTQEEC-R--------------- 496 (986)
T ss_dssp EEEEEETTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCSTTCCCTTTS-C---------------
T ss_pred eEEEEECCE-EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCcCCCccccce-e---------------
Confidence 456778754 3455555 357999999999999999999999995 322111100000 0
Q ss_pred HHHHHHhhccccc-ccchh-hhhchhhhhcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCE
Q 040300 161 EDNLKAIIKPQYV-DHIPK-AVQGNVGQVLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEI 237 (605)
Q Consensus 161 ~~~~~~~~~~q~~-~~~~~-~~~~~v~~~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~v 237 (605)
..+.+|.. ...+. .+...+...+... ++++.++++.+||. +.+++++.+||||||||++||+||+.+|++
T Consensus 497 -----~~~v~q~~~~~~~~ltv~e~l~~~~~~~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~l 569 (986)
T 2iw3_A 497 -----TVYVEHDIDGTHSDTSVLDFVFESGVGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADI 569 (986)
T ss_dssp -----EEETTCCCCCCCTTSBHHHHHHTTCSSC--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSE
T ss_pred -----EEEEcccccccccCCcHHHHHHHhhcCH--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 00001110 00000 0000010000001 45688899999994 789999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcccc-c-cccccchhhHHHHHhhhcC
Q 040300 238 YMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGA-Y-GVVTLPFSVREGINIFLAG 315 (605)
Q Consensus 238 lllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~-~-g~~~~~~~~r~~i~~~l~g 315 (605)
||||||||+||+.++.++.++|++ .|.|||+||||++++..+||+|++|.++... | |....-.........+..
T Consensus 570 LLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~~~~~~~~- 645 (986)
T 2iw3_A 570 LLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEE- 645 (986)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCGGGGGSSS-
T ss_pred EEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhHHHHHHHh-
Confidence 999999999999999999999988 4899999999999999999999999754321 1 211000000000000000
Q ss_pred CCCCcccc--cccccccccccCCCcchhhhhhhheeeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHH
Q 040300 316 FVPTENLR--FRDESLTFRVAETPQESAEEIETYARYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIR 392 (605)
Q Consensus 316 ~~~~e~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk 392 (605)
+...... +............... ....++. +++|++. ...+++++|++..| |+++|+||||||||||+|
T Consensus 646 -l~~~~~~~~~p~~~~~~~~~~~~~~-mL~v~nL-s~~Y~g~~~~iL~dVSl~I~~G-----eivaIiGpNGSGKSTLLk 717 (986)
T 2iw3_A 646 -LSNTDLEFKFPEPGYLEGVKTKQKA-IVKVTNM-EFQYPGTSKPQITDINFQCSLS-----SRIAVIGPNGAGKSTLIN 717 (986)
T ss_dssp -TTTCCCCCCCCCCCCCTTCCSTTSE-EEEEEEE-EECCTTCSSCSEEEEEEEEETT-----CEEEECSCCCHHHHHHHH
T ss_pred -hhhhhhhccccccccccccccCCCc-eEEEEee-EEEeCCCCceeeeccEEEEcCC-----CEEEEECCCCCCHHHHHH
Confidence 0000000 0000000000000111 1222334 7788642 34689999999888 689999999999999999
Q ss_pred HHHcCCCCCeeeeeccccCcceeEeecCcCC----CCCcCcHHHHHHhhh------------------------------
Q 040300 393 MLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS----PKFQSTVRHLLHQKI------------------------------ 438 (605)
Q Consensus 393 ~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~----~~~~~tv~~~~~~~~------------------------------ 438 (605)
+|+|+++|++|++.. ....+++|++|+.. .....|+.+++....
T Consensus 718 lLaGll~P~sG~I~~--~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~ 795 (986)
T 2iw3_A 718 VLTGELLPTSGEVYT--HENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKI 795 (986)
T ss_dssp HHTTSSCCSEEEEEE--CTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEE
T ss_pred HHhCCCCCCceEEEE--cCccceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhccccc
Confidence 999999999999852 12346899988631 111234443321000
Q ss_pred --------------------------------------------------------------------------c-cCCC
Q 040300 439 --------------------------------------------------------------------------R-DSYT 443 (605)
Q Consensus 439 --------------------------------------------------------------------------~-~~~~ 443 (605)
. ....
T Consensus 796 ~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~ 875 (986)
T 2iw3_A 796 EGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPL 875 (986)
T ss_dssp TTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred ccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchh
Confidence 0 0001
Q ss_pred CHHHHHHHHhhcCCch-h-hccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q 040300 444 HPQFVSDVMKPLLIEQ-L-MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521 (605)
Q Consensus 444 ~~~~~~~~l~~l~l~~-~-~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 521 (605)
....+.++++.+|+.. . .++++.+|||||||||+|||||+++|+||||||||+|||+.++..+.+.|+++ +.||
T Consensus 876 ~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tV 951 (986)
T 2iw3_A 876 TRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGV 951 (986)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEE
T ss_pred HHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEE
Confidence 1345678899999975 4 68999999999999999999999999999999999999999999988888764 6799
Q ss_pred EEEecCHHHHHhhcCEEEEEeCCc
Q 040300 522 FVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 522 ivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|+||||++++..+|||+++|+++.
T Consensus 952 IiISHD~e~v~~l~DrVivL~~G~ 975 (986)
T 2iw3_A 952 IIITHSAEFTKNLTEEVWAVKDGR 975 (986)
T ss_dssp EEECSCHHHHTTTCCEEECCBTTB
T ss_pred EEEECCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999998654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-62 Score=591.34 Aligned_cols=205 Identities=23% Similarity=0.345 Sum_probs=163.1
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
+++|++. ...+++++|++.+| |++||+||||||||||+++|+|+++|++|++. +.++. +..++|
T Consensus 1037 ~~~y~~~~~~~~l~~vsl~i~~G-----e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 1111 (1284)
T 3g5u_A 1037 VFNYPTRPSIPVLQGLSLEVKKG-----QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGI 1111 (1284)
T ss_dssp EBCCSCGGGCCSBSSCCEEECSS-----SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEE
T ss_pred EEECCCCCCCeeecceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEE
Confidence 5667643 23678889988888 79999999999999999999999999999986 22222 235999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccC-----------cCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQE-----------VVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-----------~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+||++. .|..|+++++.............+.+.++..++.++.++. ..+|||||||||+|||||+++|
T Consensus 1112 v~Q~~~-l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p 1190 (1284)
T 3g5u_A 1112 VSQEPI-LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP 1190 (1284)
T ss_dssp EESSCC-CCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred ECCCCc-cccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCC
Confidence 999974 4678999998643222122344556666666666554433 4689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccccc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF 564 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~ 564 (605)
+||||||||++||++++..+.+.|+++ . .|+|+|+||||++++.. ||||+||+++.. ...|+|++++.....|
T Consensus 1191 ~iLiLDEpTs~lD~~~~~~i~~~l~~~-~-~~~tvi~isH~l~~i~~-~dri~vl~~G~i--~~~g~~~~l~~~~g~y 1263 (1284)
T 3g5u_A 1191 HILLLDEATSALDTESEKVVQEALDKA-R-EGRTCIVIAHRLSTIQN-ADLIVVIQNGKV--KEHGTHQQLLAQKGIY 1263 (1284)
T ss_dssp SSEEEESCSSSCCHHHHHHHHHHHHHH-S-SSSCEEEECSCTTGGGS-CSEEEEEETBEE--EEEECHHHHHHSCSHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHh-C-CCCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHHHHHhCCCHH
Confidence 999999999999999999999999985 3 48999999999999865 999999997654 4569999998764334
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-62 Score=558.47 Aligned_cols=332 Identities=23% Similarity=0.304 Sum_probs=225.6
Q ss_pred HHHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecC
Q 040300 199 DLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHD 275 (605)
Q Consensus 199 ~~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHd 275 (605)
++++.+||.+. +++++.+|||||||||+|||||+++|+ +||||||||+||+..+.++.++|+++.++|.|||+||||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46888999875 799999999999999999999999998 999999999999999999999999998789999999999
Q ss_pred HhHHHhhcCEEEEEeCccc-cccccccchhhHH-------HHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhh
Q 040300 276 LSVLDYLSDFICCLYGKPG-AYGVVTLPFSVRE-------GINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETY 347 (605)
Q Consensus 276 l~~l~~~~D~i~vl~g~~~-~~g~~~~~~~~r~-------~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~ 347 (605)
++++.. ||+|++|..+.+ ..|.+....+..+ ....|+.+... .. ....... ....
T Consensus 264 ~~~~~~-~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~----~~~~ 326 (670)
T 3ux8_A 264 EDTMLA-ADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKF---IP---------IPAERRR----PDGR 326 (670)
T ss_dssp HHHHHH-CSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHHHTTSSC---CC---------CCSSCCC----CCSC
T ss_pred HHHHhh-CCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHHhccccc---cc---------ccccccc----cccc
Confidence 998764 999999931110 0111111111111 11122221100 00 0000000 0001
Q ss_pred eeeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH----------------------cCCCCCeee
Q 040300 348 ARYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA----------------------GLLKPDSVE 404 (605)
Q Consensus 348 ~~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~----------------------Gl~~p~~G~ 404 (605)
.+.+.+. ...+++++|++.+| |+++|+||||||||||+++|+ |+..++ +.
T Consensus 327 -~~~~~~~~~~~L~~vsl~I~~G-----e~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~-~~ 399 (670)
T 3ux8_A 327 -WLEVVGAREHNLKNVSVKIPLG-----TFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD-KV 399 (670)
T ss_dssp -EEEEEEECSTTCCSEEEEEETT-----SEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCS-EE
T ss_pred -ceeecCccccccccceeEecCC-----CEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccC-ce
Confidence 2222211 12578999999988 689999999999999998754 222221 11
Q ss_pred ee--cccc---Cc---------------------------------------------ceeEeecCcCC-----------
Q 040300 405 DS--DVEI---PE---------------------------------------------FNVSYKPQKIS----------- 423 (605)
Q Consensus 405 i~--~~~~---~~---------------------------------------------~~i~y~~q~~~----------- 423 (605)
+. .... +. ...++++|+..
T Consensus 400 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~ 479 (670)
T 3ux8_A 400 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 479 (670)
T ss_dssp EECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTT
T ss_pred eEeccccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeeccccccccccccc
Confidence 11 0000 00 00011111100
Q ss_pred ---------------------CCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHH
Q 040300 424 ---------------------PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLC 481 (605)
Q Consensus 424 ---------------------~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~a 481 (605)
....+|+.+++.... .........+.+..+++.. ..++++.+|||||||||+||||
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 480 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA--SIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAE 557 (670)
T ss_dssp TTTCCBCHHHHTCCBTTBCHHHHHTSBHHHHHHHTT--TCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHH
T ss_pred ccCcccChhhhheeecCCCHHHHhhCCHHHHHHHHH--HhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHH
Confidence 001245555543211 1111234567788889874 5689999999999999999999
Q ss_pred HccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE------eCCcceeeecC
Q 040300 482 LGKPA---DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY------EGQPSVDCVAN 552 (605)
Q Consensus 482 L~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~------~g~~~~~~~~~ 552 (605)
|+++| +||||||||+|||+.++..++++|+++.+ .|.|||+||||++++. .||||++| +++. ....+
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~--i~~~g 633 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQ--IVAVG 633 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCE--EEEEE
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCE--EEEec
Confidence 99887 49999999999999999999999999865 4999999999999885 59999999 4333 35678
Q ss_pred Chhhhhcc
Q 040300 553 APQSLLTG 560 (605)
Q Consensus 553 ~p~~~~~~ 560 (605)
+|+++...
T Consensus 634 ~~~~~~~~ 641 (670)
T 3ux8_A 634 TPEEVAEV 641 (670)
T ss_dssp CHHHHHTC
T ss_pred CHHHHHhC
Confidence 99998654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-57 Score=551.10 Aligned_cols=205 Identities=21% Similarity=0.331 Sum_probs=163.7
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
+|+||+. .+++++++|++.+| |.+||+||+|||||||+++|.|+++|++|+|. +.++. +.+++|
T Consensus 1083 sf~Y~~~~~~~VL~~isl~I~~G-----e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~ 1157 (1321)
T 4f4c_A 1083 RFAYPERPEIEILKGLSFSVEPG-----QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAI 1157 (1321)
T ss_dssp EECCTTSCSSCSEEEEEEEECTT-----CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEE
T ss_pred EEeCCCCCCCccccceeEEECCC-----CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 5677643 24688999998888 79999999999999999999999999999986 33332 235999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhh-------ccC----cCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLM-------DQE----VVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~----~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+||++. .|..|+++|+.........+.+.+.++++..++.++. |.. -.+||||||||++|||||+++|
T Consensus 1158 V~Qdp~-LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~ 1236 (1321)
T 4f4c_A 1158 VSQEPT-LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNP 1236 (1321)
T ss_dssp ECSSCC-CCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCC
T ss_pred ECCCCE-eeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCC
Confidence 999975 5789999998543211122345677778877776543 333 3579999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccccc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF 564 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~ 564 (605)
+|||||||||+||+++...+.+.|+++. .++|+|+|+|.+..+.. ||||+||+++.. ...|+|++++.....|
T Consensus 1237 ~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi~~-aD~I~Vld~G~I--vE~Gth~eLl~~~g~y 1309 (1321)
T 4f4c_A 1237 KILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTVMN-ADCIAVVSNGTI--IEKGTHTQLMSEKGAY 1309 (1321)
T ss_dssp SEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTTTT-CSEEEEESSSSE--EEEECHHHHHHCC---
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHHHh-CCEEEEEECCEE--EEECCHHHHHhCCcHH
Confidence 9999999999999999999999999863 48999999999998865 999999997665 4569999998764333
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-50 Score=468.40 Aligned_cols=336 Identities=25% Similarity=0.334 Sum_probs=229.9
Q ss_pred HHHHHHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEE
Q 040300 196 MKADLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVV 272 (605)
Q Consensus 196 ~~~~~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivv 272 (605)
+..+.+..+||..+ ++|++.+|||||+|||+||+||+++|+ +|||||||++||+..+.++.++|++|.+.|.|||+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34567888999865 799999999999999999999999887 999999999999999999999999998889999999
Q ss_pred ecCHhHHHhhcCEEEEEeCcccc-ccccccchhhHH--------HHHhhhcCCCCCcccccccccccccccCCCcchhhh
Q 040300 273 EHDLSVLDYLSDFICCLYGKPGA-YGVVTLPFSVRE--------GINIFLAGFVPTENLRFRDESLTFRVAETPQESAEE 343 (605)
Q Consensus 273 sHdl~~l~~~~D~i~vl~g~~~~-~g~~~~~~~~r~--------~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~ 343 (605)
|||++++.. ||+|++|..+.+. .|.+....+..+ ....|+.+... .. .......
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~~l~~~~~----------~~--~~~~~~~---- 585 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEYLSGKRK----------IT--VNKTRRL---- 585 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHSCTTCHHHHHHHSSSC----------CC--CCSSCCC----
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcCchhcchhhhhhcccc----------cc--ccccccc----
Confidence 999999876 9999999322111 111111111111 11122222110 00 0000000
Q ss_pred hhhheeeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHH---------HHHHcCCCCC------eeeee-
Q 040300 344 IETYARYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFI---------RMLAGLLKPD------SVEDS- 406 (605)
Q Consensus 344 ~~~~~~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLl---------k~L~Gl~~p~------~G~i~- 406 (605)
... .+.+.+. ...+++++|++..| |+++|+|+||||||||+ +++.|...+. +|...
T Consensus 586 -~~~-~l~v~~~~~~~Lk~Vsl~I~~G-----eiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i 658 (916)
T 3pih_A 586 -PYA-SLKIKGVRHNNLKNIDVEIPLG-----VFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENI 658 (916)
T ss_dssp -CSS-EEEEEEECSTTCCSEEEEEESS-----SEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGC
T ss_pred -ccc-eEEEeeeccccccccceEEcCC-----cEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccc
Confidence 000 2222211 12478999999888 68999999999999997 4454443332 22100
Q ss_pred ------c-ccc---C---------------------------------------------cceeEeecCcCCCC------
Q 040300 407 ------D-VEI---P---------------------------------------------EFNVSYKPQKISPK------ 425 (605)
Q Consensus 407 ------~-~~~---~---------------------------------------------~~~i~y~~q~~~~~------ 425 (605)
+ ..+ + ....+|++++....
T Consensus 659 ~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~ 738 (916)
T 3pih_A 659 DKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVE 738 (916)
T ss_dssp CEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEE
T ss_pred cceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceee
Confidence 0 000 0 00012222221110
Q ss_pred --------------------------CcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHH
Q 040300 426 --------------------------FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVAL 478 (605)
Q Consensus 426 --------------------------~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvai 478 (605)
..+|+.+.+... ........+.++++.+||.. .+++++.+|||||+|||+|
T Consensus 739 c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~--~~~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~L 816 (916)
T 3pih_A 739 CDVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFF--KNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKL 816 (916)
T ss_dssp CTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHT--TTCHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHH
T ss_pred cccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHH--hcchhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHH
Confidence 112343333211 00111234567899999985 4689999999999999999
Q ss_pred HHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE------eCCcceee
Q 040300 479 CLCLGKPA---DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY------EGQPSVDC 549 (605)
Q Consensus 479 A~aL~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~------~g~~~~~~ 549 (605)
||||+++| +||||||||+|||+.++..++++|+++.+ .|.|||+||||++++.. ||||++| +++ ...
T Consensus 817 AraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G--~Iv 892 (916)
T 3pih_A 817 ASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGG--YIV 892 (916)
T ss_dssp HHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCC--EEE
T ss_pred HHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCC--EEE
Confidence 99999875 79999999999999999999999999864 59999999999999865 9999999 443 345
Q ss_pred ecCChhhhhccc
Q 040300 550 VANAPQSLLTGM 561 (605)
Q Consensus 550 ~~~~p~~~~~~~ 561 (605)
+.|+|+++....
T Consensus 893 ~~Gtpeel~~~~ 904 (916)
T 3pih_A 893 ATGTPEEIAKNP 904 (916)
T ss_dssp EEESHHHHHSCT
T ss_pred EEcCHHHHHhCC
Confidence 789999998753
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-49 Score=456.74 Aligned_cols=338 Identities=25% Similarity=0.319 Sum_probs=231.4
Q ss_pred HHHHHHHHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEE
Q 040300 194 RDMKADLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270 (605)
Q Consensus 194 ~~~~~~~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvi 270 (605)
.+++ +.+..+||..+ ++|++.+|||||+|||+||++|+.+| ++|||||||++||+..+.+++++|++|.+.|.|||
T Consensus 482 ~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVI 560 (972)
T 2r6f_A 482 RDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLI 560 (972)
T ss_dssp HHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEE
T ss_pred HHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3444 46889999875 89999999999999999999999985 99999999999999999999999999988899999
Q ss_pred EEecCHhHHHhhcCEEEEEeCccccc-cccc--c-chhh----HHHHHhhhcCCCCCcccccccccccccccCCCcchhh
Q 040300 271 VVEHDLSVLDYLSDFICCLYGKPGAY-GVVT--L-PFSV----REGINIFLAGFVPTENLRFRDESLTFRVAETPQESAE 342 (605)
Q Consensus 271 vvsHdl~~l~~~~D~i~vl~g~~~~~-g~~~--~-~~~~----r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~ 342 (605)
+||||++++. .||+|++|..+.|.. |.+. . +... ......++.|.... ..... ....... ..
T Consensus 561 vVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~~~slt~~~l~g~~~~---~~~~~-----~~~~~~~-~L 630 (972)
T 2r6f_A 561 VVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFI---PIPAE-----RRRPDGR-WL 630 (972)
T ss_dssp EECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTTCTTCTTHHHHHTSSCC---CCCSS-----CCCCCSC-EE
T ss_pred EEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHhhhHHHHHHHhcCCccc---cCccc-----cccccce-EE
Confidence 9999999986 699999993211111 1110 0 0000 00111222221110 00000 0000001 00
Q ss_pred hhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH-cCC-------CCCeeee---ec----
Q 040300 343 EIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA-GLL-------KPDSVED---SD---- 407 (605)
Q Consensus 343 ~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~-Gl~-------~p~~G~i---~~---- 407 (605)
..+ ..+. ..+++++|++..| |+++|+|+||||||||+++|+ |.+ .+..|.+ .+
T Consensus 631 ~v~---~l~~----~~Lk~Vsl~I~~G-----eiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~ 698 (972)
T 2r6f_A 631 EVV---GARE----HNLKNVSVKIPLG-----TFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL 698 (972)
T ss_dssp EEE---EECS----SSCCSEEEEEESS-----SEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGC
T ss_pred EEe---cCcc----cccccceEEEcCC-----CEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecccccc
Confidence 001 1111 2478899998888 789999999999999999853 321 1222321 00
Q ss_pred --------ccc---C-----------------------cceeEeecCcCCCCC---------------------------
Q 040300 408 --------VEI---P-----------------------EFNVSYKPQKISPKF--------------------------- 426 (605)
Q Consensus 408 --------~~~---~-----------------------~~~i~y~~q~~~~~~--------------------------- 426 (605)
..+ + ...++|++|..++..
T Consensus 699 ~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ 778 (972)
T 2r6f_A 699 DKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVP 778 (972)
T ss_dssp SEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEE
T ss_pred ceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccc
Confidence 000 0 012456666432210
Q ss_pred ---------------------------cCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHH
Q 040300 427 ---------------------------QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVAL 478 (605)
Q Consensus 427 ---------------------------~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvai 478 (605)
.+|+.+.+... ..........++++.++|.. .+++++.+|||||||||+|
T Consensus 779 ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~--~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~L 856 (972)
T 2r6f_A 779 CEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFF--ASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKL 856 (972)
T ss_dssp CTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHT--CSCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHH
T ss_pred ccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHH--hcchhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHH
Confidence 12333332210 00111123467899999987 7899999999999999999
Q ss_pred HHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe------CCcceee
Q 040300 479 CLCLGKPA---DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE------GQPSVDC 549 (605)
Q Consensus 479 A~aL~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~------g~~~~~~ 549 (605)
|++|+++| +||||||||+|||+.++..++++|+++.+ .|.|||+||||++++. .||||++|. ++. ..
T Consensus 857 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i~-~aDrIivL~p~gG~~~G~--Iv 932 (972)
T 2r6f_A 857 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQ--IV 932 (972)
T ss_dssp HHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHT-TCSEEEEECSSSTTSCCS--EE
T ss_pred HHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHH-hCCEEEEEcCCCCCCCCE--EE
Confidence 99999865 99999999999999999999999999864 5999999999999984 799999993 332 34
Q ss_pred ecCChhhhhcc
Q 040300 550 VANAPQSLLTG 560 (605)
Q Consensus 550 ~~~~p~~~~~~ 560 (605)
..++|+++...
T Consensus 933 ~~g~~~el~~~ 943 (972)
T 2r6f_A 933 AVGTPEEVAEV 943 (972)
T ss_dssp EEESHHHHHTC
T ss_pred EecCHHHHHhC
Confidence 67889988764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-49 Score=454.22 Aligned_cols=338 Identities=22% Similarity=0.296 Sum_probs=230.1
Q ss_pred HHHHHHHHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEE
Q 040300 194 RDMKADLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270 (605)
Q Consensus 194 ~~~~~~~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvi 270 (605)
..+++ .+..+||.++ +++++.+|||||+|||+||++|+.+|+ +|||||||++||+..+.+++++|++|.+.|.|||
T Consensus 357 ~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVI 435 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLF 435 (842)
T ss_dssp HHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 34444 6788999876 899999999999999999999999995 9999999999999999999999999988899999
Q ss_pred EEecCHhHHHhhcCEEEEEeCccccc-cc--ccc-chhh----HHHHHhhhcCCCCCcccccccccccccccCCCcchhh
Q 040300 271 VVEHDLSVLDYLSDFICCLYGKPGAY-GV--VTL-PFSV----REGINIFLAGFVPTENLRFRDESLTFRVAETPQESAE 342 (605)
Q Consensus 271 vvsHdl~~l~~~~D~i~vl~g~~~~~-g~--~~~-~~~~----r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~ 342 (605)
+||||++++. .||+|++|..+.+.. |. ... +... ......++.+..+.. .. ....... ..
T Consensus 436 vVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~~~~~~l~~~~~~~-----~~-----~~~~~~~-~L 503 (842)
T 2vf7_A 436 VVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQTGQYLFADRHTE-----PH-----TPREPAG-WL 503 (842)
T ss_dssp EECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGGCTTCHHHHHHHTCCCCC-----CC-----CCCCCSC-EE
T ss_pred EEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHhchHHHHHHHhhhccccc-----cc-----ccCCCCc-eE
Confidence 9999999876 699999993211110 11 110 1111 011122333221110 00 0000011 00
Q ss_pred hhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHH-HHcCC-------CCC-------------
Q 040300 343 EIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRM-LAGLL-------KPD------------- 401 (605)
Q Consensus 343 ~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~-L~Gl~-------~p~------------- 401 (605)
..+ ..++. .+++++|++..| |+++|+|+||||||||+++ |+|++ +|+
T Consensus 504 ~v~---~l~~~----~L~~vsl~i~~G-----eiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~ 571 (842)
T 2vf7_A 504 ELN---GVTRN----NLDNLDVRFPLG-----VMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTA 571 (842)
T ss_dssp EEE---EEEET----TEEEEEEEEESS-----SEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------
T ss_pred EEE---eeeec----ccccceEEEcCC-----CEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccc
Confidence 011 12221 378888888888 7899999999999999996 77554 342
Q ss_pred -----ee-------eee--cccc---Cc-----------------------ceeEeecCcCCCC----------------
Q 040300 402 -----SV-------EDS--DVEI---PE-----------------------FNVSYKPQKISPK---------------- 425 (605)
Q Consensus 402 -----~G-------~i~--~~~~---~~-----------------------~~i~y~~q~~~~~---------------- 425 (605)
+| .+. ...+ +. ..++|.++..++.
T Consensus 572 ~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~ 651 (842)
T 2vf7_A 572 GSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVM 651 (842)
T ss_dssp CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEE
T ss_pred ccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccc
Confidence 34 111 0000 00 0012222111100
Q ss_pred ------------------------------CcCcHHHHHHhhhc------cCCCCHHHHHHHHhhcCCch-hhccCcCcC
Q 040300 426 ------------------------------FQSTVRHLLHQKIR------DSYTHPQFVSDVMKPLLIEQ-LMDQEVVNL 468 (605)
Q Consensus 426 ------------------------------~~~tv~~~~~~~~~------~~~~~~~~~~~~l~~l~l~~-~~~~~~~~L 468 (605)
...++.+++..... ........+.++++.++|.. .+++++.+|
T Consensus 652 ~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~L 731 (842)
T 2vf7_A 652 VELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATEL 731 (842)
T ss_dssp ETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGC
T ss_pred hhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCcccC
Confidence 01233333321110 00011234678899999987 469999999
Q ss_pred ChhHHHHHHHHHHHccC---CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe---
Q 040300 469 SGGELQRVALCLCLGKP---ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE--- 542 (605)
Q Consensus 469 SGGe~QRvaiA~aL~~~---p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~--- 542 (605)
||||||||+||++|+++ |+||||||||+|||+..+..++++|+++.+ .|.|||+||||++++ .+||||++|.
T Consensus 732 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVIvisHdl~~i-~~aDrii~L~p~~ 809 (842)
T 2vf7_A 732 SGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVIAVEHKMQVV-AASDWVLDIGPGA 809 (842)
T ss_dssp CHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH-TTCSEEEEECSSS
T ss_pred CHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH-HhCCEEEEECCCC
Confidence 99999999999999996 799999999999999999999999999864 599999999999999 6899999993
Q ss_pred ---CCcceeeecCChhhhhcc
Q 040300 543 ---GQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 543 ---g~~~~~~~~~~p~~~~~~ 560 (605)
++. ....++|+++...
T Consensus 810 g~~~G~--Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 810 GEDGGR--LVAQGTPAEVAQA 828 (842)
T ss_dssp GGGCCS--EEEEECHHHHTTC
T ss_pred CCCCCE--EEEEcCHHHHHhC
Confidence 332 2456888888764
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=353.93 Aligned_cols=226 Identities=23% Similarity=0.354 Sum_probs=183.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|++
T Consensus 18 ~~~~~~-~~vL~~vsl~i~~G-----e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~ 91 (266)
T 4g1u_C 18 HYHVQQ-QALINDVSLHIASG-----EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMR 91 (266)
T ss_dssp EEEETT-EEEEEEEEEEEETT-----CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred EEEeCC-eeEEEeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEe
Confidence 778875 35799999999988 68999999999999999999999999999985 22221 12489999
Q ss_pred CcCCCCCcCcHHHHHHhhhcc--CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc------CCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQKIRD--SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK------PADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~------~p~lllL 491 (605)
|+....+..||.+++...... .......+.++++.+++.++.++++.+|||||||||+|||||++ +|++|||
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLll 171 (266)
T 4g1u_C 92 QYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFL 171 (266)
T ss_dssp SCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEE
T ss_pred cCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence 997776788999988643221 11224567889999999999999999999999999999999999 9999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc-cceecce
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL-FLSHLDI 570 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~-~l~~~~~ 570 (605)
||||+|||+.++..++++|+++.++.+.|||+||||++++..+||||++|+++.. ...++|+++++..+. -+.....
T Consensus 172 DEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i--~~~g~~~~~~~~~~l~~~~~~~~ 249 (266)
T 4g1u_C 172 DEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKL--VACGTPEEVLNAETLTQWYQADL 249 (266)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEE--EEEECHHHHCCHHHHHHHCCSCE
T ss_pred eCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEE--EEEcCHHHHhCcHHHHHHhCCCc
Confidence 9999999999999999999999766578999999999999999999999986543 466899998775321 1223444
Q ss_pred EEEecCCCCcce
Q 040300 571 TFRRDPTNFRPR 582 (605)
Q Consensus 571 ~~~~~~~~~rpr 582 (605)
.+..++..+.|.
T Consensus 250 ~~~~~~~~~~~~ 261 (266)
T 4g1u_C 250 GVSRHPESALPQ 261 (266)
T ss_dssp EEEECSSSSSEE
T ss_pred EEeecCCCCceE
Confidence 555555444443
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=359.14 Aligned_cols=205 Identities=22% Similarity=0.311 Sum_probs=172.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc--C-------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI--P-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~--~-------~~~i~y 417 (605)
+++|++....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ . ...++|
T Consensus 14 s~~y~~~~~~L~~isl~i~~G-----e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~ 88 (275)
T 3gfo_A 14 NYNYSDGTHALKGINMNIKRG-----EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGI 88 (275)
T ss_dssp EEECTTSCEEEEEEEEEEETT-----SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEE
T ss_pred EEEECCCCeEEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEE
Confidence 788875445799999999988 68999999999999999999999999999986 3222 1 135999
Q ss_pred ecCcCC-CCCcCcHHHHHHhhhccC-CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKIS-PKFQSTVRHLLHQKIRDS-YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~-~~~~~tv~~~~~~~~~~~-~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
+||++. ..+..||.+++....... ... ...+.++++.+++.++.++++.+|||||||||+|||||+++|++||||
T Consensus 89 v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLD 168 (275)
T 3gfo_A 89 VFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILD 168 (275)
T ss_dssp ECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999863 345789999875432211 111 245778999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+|||+.++..++++|+++.++.|.|||+||||++++..+||||++|+++.. ...++|+++++.
T Consensus 169 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i--~~~g~~~~~~~~ 234 (275)
T 3gfo_A 169 EPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV--ILQGNPKEVFAE 234 (275)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEE--EEEECHHHHTHH
T ss_pred CccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCHHHHhcC
Confidence 999999999999999999998633499999999999999999999999986543 467899998765
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=367.09 Aligned_cols=205 Identities=20% Similarity=0.236 Sum_probs=174.1
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cc
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EF 413 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~ 413 (605)
+++|+.. ..++++++|++.+| |++||+||||||||||+|+|+|+++|++|++. +..+. +.
T Consensus 31 s~~y~~~~~~~~aL~~vsl~i~~G-----ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 105 (366)
T 3tui_C 31 TKVFHQGTRTIQALNNVSLHVPAG-----QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR 105 (366)
T ss_dssp EEEEECSSSEEEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHT
T ss_pred EEEeCCCCCCeEEEEeeEEEEcCC-----CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhC
Confidence 6777532 34689999999888 78999999999999999999999999999985 22221 13
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIY 489 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ll 489 (605)
+|+|+||+....+..||++++...... ... ....+.++++.++|.+..++++.+|||||||||+|||||+++|++|
T Consensus 106 ~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lL 185 (366)
T 3tui_C 106 QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVL 185 (366)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEE
T ss_pred cEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 599999998776778999987543221 111 1245788999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 490 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||||++||+.++..++++|+++.++.|.|||+||||++++..+||||++|+++.. ...++++++++.
T Consensus 186 LlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~i--v~~g~~~ev~~~ 254 (366)
T 3tui_C 186 LCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL--IEQDTVSEVFSH 254 (366)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEE--EECCBHHHHHSS
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 999999999999999999999999777799999999999999999999999996543 467889888764
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=365.78 Aligned_cols=204 Identities=27% Similarity=0.329 Sum_probs=174.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-------C--cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-------P--EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-------~--~~~i~y 417 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ + ...++|
T Consensus 11 s~~y~~-~~~L~~vsl~i~~G-----e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~ 84 (359)
T 3fvq_A 11 SKSFQN-TPVLNDISLSLDPG-----EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGY 84 (359)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEE
T ss_pred EEEECC-EEEEEeeEEEEcCC-----CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEE
Confidence 778875 34799999999988 68999999999999999999999999999985 2221 1 246999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccC-CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDS-YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~-~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
++|+......+||++++....... ... ...+.++++.++|.+++++++.+|||||||||+|||||+.+|++|||||
T Consensus 85 vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDE 164 (359)
T 3fvq_A 85 LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE 164 (359)
T ss_dssp ECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999987666789999986533211 111 3467889999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||++||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 165 Pts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i--~~~g~~~el~~~ 229 (359)
T 3fvq_A 165 PFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRI--LQTASPHELYRQ 229 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEE--EEEeCHHHHHhC
Confidence 99999999999999999888777799999999999999999999999986543 456889988764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=366.33 Aligned_cols=204 Identities=27% Similarity=0.355 Sum_probs=174.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ ....|+|++|+
T Consensus 10 ~~~yg~-~~~L~~vsl~i~~G-----e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~ 83 (381)
T 3rlf_A 10 TKAWGE-VVVSKDINLDIHEG-----EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 83 (381)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTT
T ss_pred EEEECC-EEEEeeeEEEECCC-----CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecC
Confidence 778875 34789999999988 68999999999999999999999999999985 2221 13469999999
Q ss_pred CCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||.+++....... .. ....+.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 84 ~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~ 163 (381)
T 3rlf_A 84 YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (381)
T ss_dssp CCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 87767789999885432211 11 124578899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 164 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i--~~~g~~~~l~~~ 224 (381)
T 3rlf_A 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV--AQVGKPLELYHY 224 (381)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEEeCHHHHHhC
Confidence 9999999999999999776799999999999999999999999997543 456888888653
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=347.08 Aligned_cols=203 Identities=24% Similarity=0.324 Sum_probs=170.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|
T Consensus 31 ~~~y~~-~~vL~~vsl~i~~G-----ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~ 104 (263)
T 2olj_A 31 KKSFGS-LEVLKGINVHIREG-----EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGM 104 (263)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEE
T ss_pred EEEECC-EEEEEeeEEEEcCC-----CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEE
Confidence 778865 34789999999888 68999999999999999999999999999985 22221 124999
Q ss_pred ecCcCCCCCcCcHHHHHHhhh-cc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKISPKFQSTVRHLLHQKI-RD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~-~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
+||+.......||++++.... .. .... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 105 v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLD 184 (263)
T 2olj_A 105 VFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD 184 (263)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 999976655679999875421 11 1111 245678999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||++||+.++..++++|+++.++ |.|||+||||++++..+|||+++|+++.. ...++++++++.
T Consensus 185 EPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 249 (263)
T 2olj_A 185 EPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYI--IEEGKPEDLFDR 249 (263)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred CCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999998655 99999999999999999999999986543 345788887653
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-42 Score=347.52 Aligned_cols=203 Identities=22% Similarity=0.291 Sum_probs=169.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------------- 411 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+.
T Consensus 13 ~~~y~~-~~vl~~vsl~i~~G-----e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1b0u_A 13 HKRYGG-HEVLKGVSLQARAG-----DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 86 (262)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHH
T ss_pred EEEECC-EEEEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChh
Confidence 778865 34789999999888 68999999999999999999999999999985 22221
Q ss_pred -----cceeEeecCcCCCCCcCcHHHHHHhhh-cc-CCC---CHHHHHHHHhhcCCchh-hccCcCcCChhHHHHHHHHH
Q 040300 412 -----EFNVSYKPQKISPKFQSTVRHLLHQKI-RD-SYT---HPQFVSDVMKPLLIEQL-MDQEVVNLSGGELQRVALCL 480 (605)
Q Consensus 412 -----~~~i~y~~q~~~~~~~~tv~~~~~~~~-~~-~~~---~~~~~~~~l~~l~l~~~-~~~~~~~LSGGe~QRvaiA~ 480 (605)
...++|+||+.......||.+++.... .. ... ....+.++++.+++.+. .++++.+|||||||||+|||
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAr 166 (262)
T 1b0u_A 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 166 (262)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHH
T ss_pred hHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHH
Confidence 124999999976656679999875421 11 111 12456789999999998 99999999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 481 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+.+|++|||||||+|||+.++..++++|+++.++ |.|||+||||++++..+|||+++|+++.. ...++++++++.
T Consensus 167 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 243 (262)
T 1b0u_A 167 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKI--EEEGDPEQVFGN 243 (262)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 999999999999999999999999999999998654 99999999999999999999999986543 345788887653
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-42 Score=341.91 Aligned_cols=192 Identities=23% Similarity=0.311 Sum_probs=158.6
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------c
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------E 412 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~ 412 (605)
+++|+.. ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. .
T Consensus 8 ~~~y~~~~~~~~~L~~isl~i~~G-----e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 82 (235)
T 3tif_A 8 TKTYKMGEEIIYALKNVNLNIKEG-----EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82 (235)
T ss_dssp EEEEEETTEEEEEEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEeCCCCcceeeEEeeeEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhh
Confidence 6677532 24689999999888 78999999999999999999999999999985 22221 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc----CCCC---HHHHHHHHhhcCCchh-hccCcCcCChhHHHHHHHHHHHcc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD----SYTH---PQFVSDVMKPLLIEQL-MDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~----~~~~---~~~~~~~l~~l~l~~~-~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
..++|++|++......||.+++...... .... ...+.++++.+++.+. .++++.+|||||||||+|||||++
T Consensus 83 ~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~ 162 (235)
T 3tif_A 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN 162 (235)
T ss_dssp HHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred ccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 2499999998766667999987542211 1111 2346788999999875 599999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
+|++|||||||++||+.++..++++|+++.++.|.|||+||||++.+ .+||||++|+++..
T Consensus 163 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i 223 (235)
T 3tif_A 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEV 223 (235)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999998765699999999999965 78999999986543
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=359.33 Aligned_cols=204 Identities=25% Similarity=0.328 Sum_probs=172.3
Q ss_pred eeec-CCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecC
Q 040300 349 RYKY-PTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y-~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q 420 (605)
+++| ++ ...+++++|++.+| |+++|+||||||||||||+|+|+++|++|++. +..+ ....++|++|
T Consensus 21 ~~~y~g~-~~vl~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 94 (355)
T 1z47_A 21 EKIYPGG-ARSVRGVSFQIREG-----EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQ 94 (355)
T ss_dssp EECCTTS-TTCEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECG
T ss_pred EEEEcCC-CEEEeeeEEEECCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEec
Confidence 7778 54 24689999999988 68999999999999999999999999999985 2222 1346999999
Q ss_pred cCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+......+||++++...... ... ....+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 95 ~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 174 (355)
T 1z47_A 95 NYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174 (355)
T ss_dssp GGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTC
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 98766678999987543221 111 12457889999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|+++++.
T Consensus 175 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i--~~~g~~~~l~~~ 236 (355)
T 1z47_A 175 AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNV--EQFGTPEEVYEK 236 (355)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 99999999999999998766689999999999999999999999996543 355888888653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=336.70 Aligned_cols=189 Identities=19% Similarity=0.218 Sum_probs=160.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------ccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~~~i 415 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...+
T Consensus 11 ~~~y~~-~~~l~~vsl~i~~G-----e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (224)
T 2pcj_A 11 KKVIRG-YEILKGISLSVKKG-----EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKL 84 (224)
T ss_dssp EEEETT-EEEEEEEEEEEETT-----CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred EEEECC-EeeEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcE
Confidence 778875 45789999999888 68999999999999999999999999999985 22221 1359
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|+||+.......||.+++...... ... ....+.++++.+++.+..++++.+|||||||||+|||||+++|++|||
T Consensus 85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFA 164 (224)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999997665667999987542211 111 124567899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||||++||+.++..+.++|+++.++ |.|||+||||++++ .+|||+++|+++.
T Consensus 165 DEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~ 216 (224)
T 2pcj_A 165 DEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGK 216 (224)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCE
Confidence 9999999999999999999998665 99999999999998 7899999998654
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=357.82 Aligned_cols=204 Identities=30% Similarity=0.398 Sum_probs=173.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ ....++|++|+
T Consensus 10 ~~~y~~-~~vl~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (359)
T 2yyz_A 10 KKYFGK-VKAVDGVSFEVKDG-----EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQN 83 (359)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSS
T ss_pred EEEECC-EEEEeeeEEEEcCC-----CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecC
Confidence 677865 34689999999888 68999999999999999999999999999985 2222 12469999999
Q ss_pred CCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||++++....... .. ....+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 84 YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp CCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 77666789999986533211 11 124578899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i--~~~g~~~~l~~~ 224 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKL--VQYGTPDEVYDS 224 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999998766689999999999999999999999996543 356888888654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=343.54 Aligned_cols=199 Identities=20% Similarity=0.323 Sum_probs=169.4
Q ss_pred eeecC-CceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCc
Q 040300 349 RYKYP-TMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQ 427 (605)
Q Consensus 349 ~~~y~-~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~ 427 (605)
+++|+ + ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. ....++|+||+....+.
T Consensus 11 ~~~y~~~-~~vl~~isl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~----~~~~i~~v~q~~~~~~~ 80 (253)
T 2nq2_C 11 GFYYQAE-NFLFQQLNFDLNKG-----DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE----VYQSIGFVPQFFSSPFA 80 (253)
T ss_dssp EEEETTT-TEEEEEEEEEEETT-----CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE----ECSCEEEECSCCCCSSC
T ss_pred EEEeCCC-CeEEEEEEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----EeccEEEEcCCCccCCC
Confidence 77786 4 34789999999888 68999999999999999999999999999984 23469999999766667
Q ss_pred CcHHHHHHhhhcc--C---CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 428 STVRHLLHQKIRD--S---YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 428 ~tv~~~~~~~~~~--~---~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
.||++++...... . ... ...+.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 81 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD 160 (253)
T 2nq2_C 81 YSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160 (253)
T ss_dssp CBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSC
T ss_pred CCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 8999988643211 1 011 2456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.++..+.++|+++.++.|.|||+||||++++..+|||+++++++. . ..++++++.+.
T Consensus 161 ~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~--~~g~~~~~~~~ 218 (253)
T 2nq2_C 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F--KFGETRNILTS 218 (253)
T ss_dssp HHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E--EEEEHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E--ecCCHHHHhCc
Confidence 9999999999999866558999999999999999999999998654 2 45778887654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=339.94 Aligned_cols=202 Identities=23% Similarity=0.262 Sum_probs=168.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+
T Consensus 13 ~~~y~~-~~vl~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 13 HVYYGA-IHAIKGIDLKVPRG-----QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEETT-EEEEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EEEECC-eeEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE
Confidence 778876 45789999999888 68999999999999999999999999999985 22221 1249999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCC-CC--HHHHHHHHhhcC-CchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSY-TH--PQFVSDVMKPLL-IEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~-~~--~~~~~~~l~~l~-l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
||+.......||.+++........ .. ...+.++++.++ +.+..++++.+|||||||||+|||||+++|++||||||
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred ecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 999766556799998864321111 11 245677889994 99999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|++||+.++..++++|+++.+ .|+|||+||||++++..+|||+++|+++.. ...++++++..
T Consensus 167 ts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 228 (240)
T 1ji0_A 167 SLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQI--VLEGKASELLD 228 (240)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEE--EEEEEHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEEcCHHHHhc
Confidence 999999999999999999865 589999999999999999999999986543 34577777754
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=357.10 Aligned_cols=203 Identities=30% Similarity=0.424 Sum_probs=172.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~ 421 (605)
+++|++. .+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|++|+
T Consensus 8 ~~~y~~~--~l~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 80 (348)
T 3d31_A 8 SRKWKNF--SLDNLSLKVESG-----EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (348)
T ss_dssp EEECSSC--EEEEEEEEECTT-----CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEECCE--EEeeeEEEEcCC-----CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecC
Confidence 7788753 789999999888 68999999999999999999999999999985 22221 2359999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
......+||++++...... .......+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus 81 ~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~ 160 (348)
T 3d31_A 81 YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (348)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 7766678999987543211 111226678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 161 ~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i--~~~g~~~~~~~~ 218 (348)
T 3d31_A 161 RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL--IQVGKPEEIFEK 218 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCE--EEEECHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 9999999999999776799999999999999999999999986543 345788888654
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=357.58 Aligned_cols=204 Identities=27% Similarity=0.362 Sum_probs=172.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ ....++|++|+
T Consensus 10 ~~~y~~~-~vl~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (362)
T 2it1_A 10 VKKFGNF-TALNNINLKIKDG-----EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQN 83 (362)
T ss_dssp EEESSSS-EEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTT
T ss_pred EEEECCE-EEEEeeEEEECCC-----CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecC
Confidence 7778653 4689999999888 68999999999999999999999999999985 2222 12469999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||++++...... .... ...+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (362)
T 2it1_A 84 WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSN 163 (362)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGG
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 7766678999987543221 1111 24577899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i--~~~g~~~~~~~~ 224 (362)
T 2it1_A 164 LDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEI--LQVGTPDEVYYK 224 (362)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999998766689999999999999999999999996543 356888888654
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=359.07 Aligned_cols=205 Identities=27% Similarity=0.307 Sum_probs=172.3
Q ss_pred eeecCCcee-eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc--------cC--ccee
Q 040300 349 RYKYPTMVK-TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE--------IP--EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~-~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~--------~~--~~~i 415 (605)
+++|++... .+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.. .+ ...+
T Consensus 10 ~~~y~~~~~~vl~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~i 84 (353)
T 1oxx_K 10 SKVFKKGKVVALDNVNINIENG-----ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI 84 (353)
T ss_dssp EEEEGGGTEEEEEEEEEEECTT-----CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCE
T ss_pred EEEECCEeeeeEeceEEEECCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCE
Confidence 677765321 689999999888 68999999999999999999999999999985 211 11 2469
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccC-CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDS-YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~-~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|++|+......+||++++....... ... ...+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus 85 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLL 164 (353)
T 1oxx_K 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLL 164 (353)
T ss_dssp EEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999987666789999986533211 111 24578899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||++||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 165 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i--~~~g~~~~l~~~ 231 (353)
T 1oxx_K 165 DEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL--VQVGKPEDLYDN 231 (353)
T ss_dssp ESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999999999998766699999999999999999999999986543 355888888653
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=358.38 Aligned_cols=204 Identities=26% Similarity=0.372 Sum_probs=172.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc---------cC--ccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE---------IP--EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~---------~~--~~~i 415 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||||+|+|+++|++|++. +.. .+ ...+
T Consensus 10 ~~~y~~-~~vl~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~i 83 (372)
T 1g29_1 10 WKVFGE-VTAVREMSLEVKDG-----EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83 (372)
T ss_dssp EEEETT-EEEEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EEEECC-EEEEeeeEEEEcCC-----CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCE
Confidence 677865 34789999999888 68999999999999999999999999999985 211 11 2469
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|++|+......+||++++...... .... ...+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus 84 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 163 (372)
T 1g29_1 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLM 163 (372)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999997766678999987543221 1111 24577899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||++||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 164 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i--~~~g~~~~l~~~ 230 (372)
T 1g29_1 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL--QQVGSPDEVYDK 230 (372)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEE--EEeCCHHHHHhC
Confidence 9999999999999999999998766699999999999999999999999996543 356888888754
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=341.41 Aligned_cols=202 Identities=19% Similarity=0.274 Sum_probs=168.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.... ...++|+||
T Consensus 22 ~~~y~~-~~vl~~vsl~i~~G-----ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q 95 (256)
T 1vpl_A 22 RKRIGK-KEILKGISFEIEEG-----EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 95 (256)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EEEECC-EEEEEeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcC
Confidence 777865 35789999999888 68999999999999999999999999999985 22221 135999999
Q ss_pred cCCCCCcCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......||++++..... ..... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 96 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 96 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9766566799998754211 11111 2356789999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+||+.++..++++|+++.+ .|.|||+||||++++..+|||+++|+++.. ...++++++..
T Consensus 176 ~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 235 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTI--VETGTVEELKE 235 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEE--EEEEEHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHCCEEEEEECCEE--EEecCHHHHHH
Confidence 9999999999999999864 489999999999999999999999986543 34577787754
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=344.20 Aligned_cols=199 Identities=20% Similarity=0.244 Sum_probs=166.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+
T Consensus 14 ~~~y~~-~~vl~~vsl~i~~G-----e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (257)
T 1g6h_A 14 VKYFGE-FKALDGVSISVNKG-----DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRT 87 (257)
T ss_dssp EEEETT-EEEEEEECCEEETT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred EEEECC-EeeEeeeEEEEeCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 778875 34789999988888 78999999999999999999999999999985 22221 1259999
Q ss_pred cCcCCCCCcCcHHHHHHhhhcc---C-----------CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHH
Q 040300 419 PQKISPKFQSTVRHLLHQKIRD---S-----------YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~---~-----------~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~a 481 (605)
||+.......||.+++...... . ... ...+.++++.+++.+..++++.+|||||||||+||||
T Consensus 88 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAra 167 (257)
T 1g6h_A 88 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRA 167 (257)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred ccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHH
Confidence 9987655568999988643211 1 111 2456789999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
|+++|++|||||||+|||+.++..++++|+++.++ |.|||+||||++++..+|||+++|+++.. ...+++++
T Consensus 168 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~ 239 (257)
T 1g6h_A 168 LMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQI--IAEGRGEE 239 (257)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEE--EEEEESHH
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEE--EEEeCHHH
Confidence 99999999999999999999999999999998654 99999999999999999999999986543 34567777
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=338.75 Aligned_cols=201 Identities=26% Similarity=0.356 Sum_probs=166.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++ .+++++|++.+ + +++|+||||||||||+|+|+|+++|++|++. +..+ ....++|+||+
T Consensus 8 ~~~y~~---~l~~isl~i~~-e-----~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 8 EKRLGN---FRLNVDFEMGR-D-----YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp EEEETT---EEEEEEEEECS-S-----EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEeCC---EEeeeEEEECC-E-----EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 677764 37888888877 6 7999999999999999999999999999985 2222 12369999999
Q ss_pred CCCCCcCcHHHHHHhhhccCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
.......||++++........ .....+.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus 79 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD 158 (240)
T 2onk_A 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCC
T ss_pred CccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 766556799998854321100 013456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.++..++++|+++.++.|+|||+||||++++..+|||+++|+++.. ...++++++++.
T Consensus 159 ~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 217 (240)
T 2onk_A 159 LKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRI--VEKGKLKELFSA 217 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 99999999999998655589999999999999999999999986543 345788887653
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=357.37 Aligned_cols=204 Identities=27% Similarity=0.378 Sum_probs=168.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||||+|+|+++|++|++. +..+ ....++|++|+
T Consensus 18 ~~~y~~-~~vl~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 91 (372)
T 1v43_A 18 TKRFGN-FTAVNKLNLTIKDG-----EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 91 (372)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEECC-EEEEeeeEEEECCC-----CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecC
Confidence 777865 34789999999888 68999999999999999999999999999985 2222 13469999999
Q ss_pred CCCCCcCcHHHHHHhhhccC-CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||++++....... ... ...+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 92 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 171 (372)
T 1v43_A 92 YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171 (372)
T ss_dssp -----CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 77666789999986532211 111 24577899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 172 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i--~~~g~~~~l~~~ 232 (372)
T 1v43_A 172 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL--LQIGSPTEVYLR 232 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999998766689999999999999999999999996543 356888888654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-44 Score=396.68 Aligned_cols=374 Identities=13% Similarity=0.093 Sum_probs=233.5
Q ss_pred eeecCC--CCCCCcEEEEECCCCChHHHHHHH--HhcCCCCCCceee--CCCChhhhhh--hhccchhhhhHHHHHHHHH
Q 040300 93 KLHRLP--VPRPGQVLGLVGTNGIGKSTALKI--LAGKLKPNLGRFN--NPPDWQEILT--YFRGSELQNYFTRILEDNL 164 (605)
Q Consensus 93 ~l~~l~--~~~~Ge~~gLvG~NGsGKSTLlki--L~G~l~p~~G~i~--~~~~~~~~~~--~~~g~~l~~~~~~~~~~~~ 164 (605)
.|++++ .+.+|++++|+|+||||||||+++ ++|+++|+.|.+. .......... .-.|..+|++.. .
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~-----~- 100 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVD-----E- 100 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHH-----T-
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhc-----c-
Confidence 344444 246999999999999999999999 7899998988874 1111110000 001111121100 0
Q ss_pred HHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 040300 165 KAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPS 244 (605)
Q Consensus 165 ~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPt 244 (605)
..+.. ..+. .. ....++++.+++.+++++.+.+||||| |++++|||||
T Consensus 101 ------~~l~~------~~~~---~~----~~~~~~l~~~~l~~~~~~~~~~LS~g~-------------~~~lilDe~t 148 (525)
T 1tf7_A 101 ------GKLFI------LDAS---PD----PEGQEVVGGFDLSALIERINYAIQKYR-------------ARRVSIDSVT 148 (525)
T ss_dssp ------TSEEE------EECC---CC----SSCCSCCSSHHHHHHHHHHHHHHHHHT-------------CSEEEEECST
T ss_pred ------CcEEE------EecC---cc----cchhhhhcccCHHHHHHHHHHHHHHcC-------------CCEEEECCHH
Confidence 00000 0000 00 011234566677777888888888885 7799999999
Q ss_pred CC-----CCHHHHHHHHHHHHHhhcCCcEEEEEecCHhH---------HHhhcCEEEEEeCccccccccccchhhHHHHH
Q 040300 245 SY-----LDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSV---------LDYLSDFICCLYGKPGAYGVVTLPFSVREGIN 310 (605)
Q Consensus 245 s~-----LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~---------l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~ 310 (605)
+. ||+..+..+.++++.+++.|+|||+|||++++ +.++||+|++|+..... |.......+..
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~~-G~~~r~l~~~k--- 224 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEG-ERRRRTLEILK--- 224 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECST-TCCEEEEEEEE---
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEccC-CceeEEEEEEE---
Confidence 84 69999999999999998789999999999998 46779999999642210 11100000000
Q ss_pred hhhcCCCCCcc---ccccccccc-ccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCC
Q 040300 311 IFLAGFVPTEN---LRFRDESLT-FRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTG 386 (605)
Q Consensus 311 ~~l~g~~~~e~---~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsG 386 (605)
+. +...... +.+....+. +................ +..|+. ++ .+-.|.+.+|++++|+||||||
T Consensus 225 -~r-~~~~~~~~~~~~i~~~gi~v~p~~~~~~~~~~~~~~l-~~g~~~----ld----~vL~g~i~~G~i~~i~G~~GsG 293 (525)
T 1tf7_A 225 -LR-GTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRV-SSGVVR----LD----EMCGGGFFKDSIILATGATGTG 293 (525)
T ss_dssp -ET-TSCCCCSEEEEEEETTEEEECCTTTCCSCCCCCCCEE-CCSCHH----HH----HHTTSSEESSCEEEEEECTTSS
T ss_pred -CC-CCCCCCceEEEEEcCCCEEEEecccccccccccccee-ecChHH----HH----HHhCCCCCCCcEEEEEeCCCCC
Confidence 00 0000000 000000000 00000000000000000 111111 11 1234678888999999999999
Q ss_pred HHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcC
Q 040300 387 KTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVV 466 (605)
Q Consensus 387 KSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 466 (605)
||||++.++|...|+ |. ..+.|.+|+. ..++........+ + ..+ +..+++..+.+.++.
T Consensus 294 KSTLl~~l~g~~~~~-G~--------~vi~~~~ee~-------~~~l~~~~~~~g~-~---~~~-~~~~g~~~~~~~~p~ 352 (525)
T 1tf7_A 294 KTLLVSRFVENACAN-KE--------RAILFAYEES-------RAQLLRNAYSWGM-D---FEE-MERQNLLKIVCAYPE 352 (525)
T ss_dssp HHHHHHHHHHHHHTT-TC--------CEEEEESSSC-------HHHHHHHHHTTSC-C---HHH-HHHTTSEEECCCCGG
T ss_pred HHHHHHHHHHHHHhC-CC--------CEEEEEEeCC-------HHHHHHHHHHcCC-C---HHH-HHhCCCEEEEEeccc
Confidence 999999999998875 42 1144555542 2222211111111 1 122 334667777888999
Q ss_pred cCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH-----HHHHHHHHHHHHHhcCCcEEEEEecCH----------HHH
Q 040300 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE-----QRIVAAKVIKRFILHAKKTAFVVEHDF----------IMA 531 (605)
Q Consensus 467 ~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~-----~~~~l~~~l~~l~~~~g~tiivvsHD~----------~~~ 531 (605)
+|||||+||+++|+++..+|++|||| ||++||.. .+..+.++++.+. +.|.|+|+||||. ..+
T Consensus 353 ~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~-~~g~tvilvsh~~~~~~~~~~~~~~l 430 (525)
T 1tf7_A 353 SAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK-QEEITGLFTNTSDQFMGAHSITDSHI 430 (525)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH-HTTCEEEEEEECSSSSCCCSSCSSCC
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH-hCCCEEEEEECcccccCcccccCccc
Confidence 99999999999999999999999999 99999999 9999999999875 5699999999999 788
Q ss_pred HhhcCEEEEEe
Q 040300 532 TYLADRVIVYE 542 (605)
Q Consensus 532 ~~~adrviv~~ 542 (605)
.++||+|++|.
T Consensus 431 ~~~~D~vi~L~ 441 (525)
T 1tf7_A 431 STITDTIILLQ 441 (525)
T ss_dssp TTTCSEEEEEE
T ss_pred ceeeeEEEEEE
Confidence 89999999986
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=340.00 Aligned_cols=204 Identities=24% Similarity=0.339 Sum_probs=169.3
Q ss_pred eeecC-Cc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----cceeEee
Q 040300 349 RYKYP-TM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----EFNVSYK 418 (605)
Q Consensus 349 ~~~y~-~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----~~~i~y~ 418 (605)
+++|+ +. ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+
T Consensus 9 ~~~y~~~~~~~~~vl~~vsl~i~~G-----e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v 83 (266)
T 2yz2_A 9 SHIFHRGTPLEKKALENVSLVINEG-----ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIA 83 (266)
T ss_dssp EEEESTTSTTCEEEEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEE
T ss_pred EEEecCCCccccceeeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEE
Confidence 67776 22 34789999999888 68999999999999999999999999999985 22221 2359999
Q ss_pred cCcC-CCCCcCcHHHHHHhhhcc---CCCCHHHHHHHHhhcCCc--hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 419 PQKI-SPKFQSTVRHLLHQKIRD---SYTHPQFVSDVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 419 ~q~~-~~~~~~tv~~~~~~~~~~---~~~~~~~~~~~l~~l~l~--~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
||++ ...+..||++++...... .......+.++++.+++. +..++++.+|||||||||+|||||+++|++||||
T Consensus 84 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD 163 (266)
T 2yz2_A 84 FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILD 163 (266)
T ss_dssp CSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred eccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 9985 334568999987542211 112245678899999999 9999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||++||+.++..++++|+++.++ |.|||+||||++++..+|||+++|+++.. ...+++++++..
T Consensus 164 EPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 228 (266)
T 2yz2_A 164 EPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKK--VFDGTRMEFLEK 228 (266)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEE--EEEEEHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 999999999999999999998655 99999999999999999999999986543 345777777654
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-41 Score=345.22 Aligned_cols=203 Identities=19% Similarity=0.192 Sum_probs=167.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|
T Consensus 28 ~~~y~~-~~vL~~isl~i~~G-----e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~ 101 (279)
T 2ihy_A 28 GRMKQG-KTILKKISWQIAKG-----DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGF 101 (279)
T ss_dssp EEEETT-EEEEEEEEEEEETT-----CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEE
T ss_pred EEEECC-EEEEEeeeEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEE
Confidence 788875 35789999999888 68999999999999999999999999999985 22221 135999
Q ss_pred ecCcCCCCC--cCcHHHHHHhhhcc------CCCC--HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 418 KPQKISPKF--QSTVRHLLHQKIRD------SYTH--PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 418 ~~q~~~~~~--~~tv~~~~~~~~~~------~~~~--~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
+||+....+ ..||++++...... .... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 102 v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 181 (279)
T 2ihy_A 102 VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQ 181 (279)
T ss_dssp ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 999864333 35999988542110 0111 2356789999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEE--EEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA--FVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti--ivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||+|||+.++..++++|+++.++ |+|| |+||||++++..+|||+++|+++.. ...++++++.+.
T Consensus 182 lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 253 (279)
T 2ihy_A 182 VLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQS--IQQGAVEDILTS 253 (279)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEE--EEEEEHHHHCSH
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCHHHHhcc
Confidence 99999999999999999999999998665 8999 9999999999999999999986543 345778887654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=334.64 Aligned_cols=192 Identities=24% Similarity=0.381 Sum_probs=163.7
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeecCcCCCCCcC
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKPQKISPKFQS 428 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~q~~~~~~~~ 428 (605)
.+++++|++.+| |+++|+||||||||||+|+|+|+++|+ |++. +.... ...++|+||+....+..
T Consensus 15 vl~~vsl~i~~G-----e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (249)
T 2qi9_C 15 RLGPLSGEVRAG-----EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT 88 (249)
T ss_dssp TEEEEEEEEETT-----CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTC
T ss_pred EEeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCC
Confidence 588999999888 689999999999999999999999999 9985 22221 13599999997765667
Q ss_pred cHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC-------EEEEecCCCCCCHH
Q 040300 429 TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD-------IYLIDEPSAYLDSE 501 (605)
Q Consensus 429 tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~-------lllLDEPt~~LD~~ 501 (605)
||++++........ ....+.++++.+++.++.++++.+|||||||||+|||||+++|+ +|||||||+|||+.
T Consensus 89 tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~ 167 (249)
T 2qi9_C 89 PVWHYLTLHQHDKT-RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 167 (249)
T ss_dssp BHHHHHHTTCSSTT-CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHH
T ss_pred cHHHHHHHhhccCC-cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHH
Confidence 99998864311111 25567889999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++..+.++|+++.++ |.|||+||||++++..+|||+++|+++.. ...++++++.+
T Consensus 168 ~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 222 (249)
T 2qi9_C 168 QQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKM--LASGRREEVLT 222 (249)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEE--EEEEEHHHHSC
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhc
Confidence 999999999998655 89999999999999999999999986543 34577888765
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=327.97 Aligned_cols=187 Identities=20% Similarity=0.321 Sum_probs=159.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc--CcceeEeecCcCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI--PEFNVSYKPQKISP 424 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~--~~~~i~y~~q~~~~ 424 (605)
+++|++ ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +... ....++|+||+...
T Consensus 17 s~~y~~--~il~~vsl~i~~G-----e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~ 89 (214)
T 1sgw_A 17 SVGYDK--PVLERITMTIEKG-----NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIV 89 (214)
T ss_dssp EEESSS--EEEEEEEEEEETT-----CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCC
T ss_pred EEEeCC--eEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcC
Confidence 788876 5799999999988 68999999999999999999999999999985 2221 13469999999766
Q ss_pred CCcCcHHHHHHhhhc--cCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040300 425 KFQSTVRHLLHQKIR--DSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQ 502 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~ 502 (605)
....||.+++..... ........+.++++.+++.+. ++++.+|||||||||+|||||+.+|++|||||||++||+.+
T Consensus 90 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~ 168 (214)
T 1sgw_A 90 PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168 (214)
T ss_dssp CTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTT
T ss_pred CCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 556799998754211 101224567889999999988 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
+..++++|+++.++ |.|||+||||++++..+|||++++.+.
T Consensus 169 ~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~~~~ 209 (214)
T 1sgw_A 169 KHKVLKSILEILKE-KGIVIISSREELSYCDVNENLHKYSTK 209 (214)
T ss_dssp HHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGGBC-
T ss_pred HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEeCCc
Confidence 99999999998654 899999999999999999999988764
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=333.13 Aligned_cols=203 Identities=18% Similarity=0.292 Sum_probs=164.0
Q ss_pred eeecCC--ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPT--MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~--~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
++.|++ ....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|
T Consensus 23 ~~~y~~~~~~~vl~~vsl~i~~G-----e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~ 97 (271)
T 2ixe_A 23 SFAYPNHPNVQVLQGLTFTLYPG-----KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA 97 (271)
T ss_dssp EECCTTCTTSCCEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEE
T ss_pred EEEeCCCCCceeeEeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEE
Confidence 778864 134689999999888 68999999999999999999999999999985 22221 125999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCC-HH--------HHHHHHhhc--CCchhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTH-PQ--------FVSDVMKPL--LIEQLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~-~~--------~~~~~l~~l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+||+... +..||++++...... ... .. .+.++++.+ ++....++++.+|||||||||+|||||+++|
T Consensus 98 v~Q~~~l-~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p 175 (271)
T 2ixe_A 98 VGQEPLL-FGRSFRENIAYGLTR-TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP 175 (271)
T ss_dssp ECSSCCC-CSSBHHHHHHTTCSS-CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC
T ss_pred EecCCcc-ccccHHHHHhhhccc-CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 9998754 457999998643211 111 11 123456666 6777889999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+||||||||++||+.++..++++|+++.++.|.|||+||||++++.. ||||++|+++.. ...++++++....
T Consensus 176 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i--~~~g~~~~l~~~~ 247 (271)
T 2ixe_A 176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSV--CEQGTHLQLMERG 247 (271)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEE--EEEECHHHHHHHT
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEE--EEECCHHHHHhCc
Confidence 99999999999999999999999999865558999999999999875 999999986543 3568888887653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=325.21 Aligned_cols=199 Identities=21% Similarity=0.310 Sum_probs=161.8
Q ss_pred eeecC-CceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYP-TMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~-~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|+ +....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+
T Consensus 14 ~~~y~~~~~~vl~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v 88 (247)
T 2ff7_A 14 RFRYKPDSPVILDNINLSIKQG-----EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVV 88 (247)
T ss_dssp EEESSTTSCEEEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEeCCCCcceeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEE
Confidence 78883 2345789999999988 68999999999999999999999999999985 22221 1259999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhcc-----------CcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ-----------EVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||+... +..||++++..... ......+.++++.+++.++.++ ++.+|||||||||+|||||+++|+
T Consensus 89 ~Q~~~l-~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 89 LQDNVL-LNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp CSSCCC-TTSBHHHHHTTTCT--TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred eCCCcc-ccccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 998754 45799999854311 1234456677888887766554 458999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||++||+.++..++++|+++ . .|.|||+||||++++.. |||+++|+++.. ...+++++++..
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~-~-~g~tviivtH~~~~~~~-~d~v~~l~~G~i--~~~g~~~~l~~~ 233 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKI-C-KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI--VEQGKHKELLSE 233 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHH-H-TTSEEEEECSSGGGGTT-SSEEEEEETTEE--EEEECHHHHHTS
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCHHHHHh-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 99999999999999999999999998 4 48999999999999865 999999986543 345788887654
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-40 Score=335.54 Aligned_cols=201 Identities=23% Similarity=0.311 Sum_probs=152.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.....|++++ .+.+||++||+||||||||||+|+|+|+++|+.|+|. +
T Consensus 7 ~l~i~~l--------s~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~-----------~ 67 (275)
T 3gfo_A 7 ILKVEEL--------NYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL-----------F 67 (275)
T ss_dssp EEEEEEE--------EEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-----------E
T ss_pred EEEEEEE--------EEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEE-----------E
Confidence 6777775 456754333566665 4579999999999999999999999999999999985 3
Q ss_pred ccchhh--hhHHHHHHHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 148 RGSELQ--NYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 148 ~g~~l~--~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|.++. ....... ....++.+|..+. ..+..++.+. +.....++++.++++.+||.+++++++.+
T Consensus 68 ~G~~i~~~~~~~~~~--~~~ig~v~Q~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (275)
T 3gfo_A 68 DNKPIDYSRKGIMKL--RESIGIVFQDPDN--QLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHC 143 (275)
T ss_dssp TTEECCCSHHHHHHH--HHSEEEECSSGGG--TCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred CCEECCcccccHHHH--hCcEEEEEcCccc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCccc
Confidence 343331 1000000 1112333443210 0011122221 12334467889999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~-~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||||||+||+||+.+|++||||||||+||+.++..++++|+++. ++|+|||+||||++++..+||+|++|+.+
T Consensus 144 LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G 220 (275)
T 3gfo_A 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEG 220 (275)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999997 45999999999999999999999999743
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=328.86 Aligned_cols=197 Identities=24% Similarity=0.330 Sum_probs=164.2
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----CcceeE-ee
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----PEFNVS-YK 418 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~~~~i~-y~ 418 (605)
+++|++. ...+++++|++. | |+++|+||||||||||+|+|+|++ |++|++. +... ....++ |+
T Consensus 8 ~~~y~~~~~~~~il~~vsl~i~-G-----e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v 80 (263)
T 2pjz_A 8 GITLSGKGYERFSLENINLEVN-G-----EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNL 80 (263)
T ss_dssp EEEEEEETTEEEEEEEEEEEEC-S-----SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECC
T ss_pred EEEeCCCCccceeEEeeeEEEC-C-----EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEe
Confidence 6667541 346889999998 8 689999999999999999999999 9999985 2211 123699 99
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
||+... ..|+.+++.............+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 81 ~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 158 (263)
T 2pjz_A 81 PEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158 (263)
T ss_dssp GGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred CCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 999765 78999987542211122355678899999999 999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcC-EEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLAD-RVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~ad-rviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+.++..+.++|+++. . |||+||||++++..+|| |+++|+++.. ...+++++++..
T Consensus 159 LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~l~~G~i--~~~g~~~~l~~~ 216 (263)
T 2pjz_A 159 VDAARRHVISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYFLVGNRL--QGPISVSELLES 216 (263)
T ss_dssp CCHHHHHHHHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEEEETTEE--EEEEEHHHHHTE
T ss_pred cCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEEEECCEE--EEecCHHHHHhh
Confidence 99999999999999873 2 99999999999999999 9999986543 356888888754
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=325.50 Aligned_cols=197 Identities=26% Similarity=0.329 Sum_probs=145.4
Q ss_pred ceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+.. ...|++++ .+.+||++||+||||||||||+|+|+|+++|+.|+|. +.|.++..+...
T Consensus 7 l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~-----------~~g~~~~~~~~~ 75 (235)
T 3tif_A 7 VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY-----------IDNIKTNDLDDD 75 (235)
T ss_dssp EEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-----------ETTEECTTCCHH
T ss_pred EEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE-----------ECCEEcccCCHH
Confidence 45567532 23466666 4689999999999999999999999999999999985 333332221111
Q ss_pred HHHH--HHHHhhcccccccchh-hhhchhhh--------hcCchHHHHHHHHHHhhcCCchh-hcccCCCCChHHHHHHH
Q 040300 159 ILED--NLKAIIKPQYVDHIPK-AVQGNVGQ--------VLDQKDERDMKADLCTDLDLNQV-IDRNVGDLSGGELQRFA 226 (605)
Q Consensus 159 ~~~~--~~~~~~~~q~~~~~~~-~~~~~v~~--------~l~~~~~~~~~~~~l~~l~L~~~-~dr~v~~LSGGe~QRva 226 (605)
.... ....++.+|.....+. .+..++.. ........+++.++++.++|.+. +++++.+|||||||||+
T Consensus 76 ~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred HHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH
Confidence 1000 1123344444333232 11112111 01123345678899999999875 59999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 227 IA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||||+++|++||||||||+||+..+..+.++|+++.++ |+|||+||||++++ .+||+|++|+.
T Consensus 156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~ 220 (235)
T 3tif_A 156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKD 220 (235)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEET
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEEC
Confidence 999999999999999999999999999999999999765 99999999999965 78999999964
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=327.46 Aligned_cols=198 Identities=20% Similarity=0.189 Sum_probs=157.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcC--CCCCeeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl--~~p~~G~i~--~~~~~--------~~~i~ 416 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+ ++|++|++. +..+. ...++
T Consensus 10 ~~~y~~-~~vl~~vsl~i~~G-----e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 83 (250)
T 2d2e_A 10 WASIDG-ETILKGVNLVVPKG-----EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLF 83 (250)
T ss_dssp EEEETT-EEEEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBC
T ss_pred EEEECC-EEEEeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEE
Confidence 778875 45789999999888 68999999999999999999998 789999985 22221 12388
Q ss_pred eecCcCCCCCcCcHHHHHHhhh---ccCCCC----HHHHHHHHhhcCC-chhhccCcCc-CChhHHHHHHHHHHHccCCC
Q 040300 417 YKPQKISPKFQSTVRHLLHQKI---RDSYTH----PQFVSDVMKPLLI-EQLMDQEVVN-LSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~---~~~~~~----~~~~~~~l~~l~l-~~~~~~~~~~-LSGGe~QRvaiA~aL~~~p~ 487 (605)
|++|++......||.+++.... ...... ...+.++++.+++ .+..++++.+ |||||||||+|||||+++|+
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~ 163 (250)
T 2d2e_A 84 LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPT 163 (250)
T ss_dssp CCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCS
T ss_pred EeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCC
Confidence 9999876655679999874321 111111 2356789999999 5889999999 99999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh-cCEEEEEeCCcceeeecCChh
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL-ADRVIVYEGQPSVDCVANAPQ 555 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~-adrviv~~g~~~~~~~~~~p~ 555 (605)
+|||||||++||+.++..++++|+++.+ .|+|||+||||++++..+ |||+++|+++.. ...++++
T Consensus 164 lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i--~~~g~~~ 229 (250)
T 2d2e_A 164 YAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRV--VATGGPE 229 (250)
T ss_dssp EEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEE--EEEESHH
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEE--EEEeCHH
Confidence 9999999999999999999999999844 589999999999999888 599999986543 2446665
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=331.13 Aligned_cols=203 Identities=23% Similarity=0.318 Sum_probs=165.1
Q ss_pred hhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------ccee
Q 040300 345 ETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNV 415 (605)
Q Consensus 345 ~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i 415 (605)
+++ +++|++...++++++|++.+| |+++|+||||||||||+++|+|+++|++|+|. +..+. ...|
T Consensus 57 ~~v-s~~y~~~~~vL~~isl~i~~G-----e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 57 ENV-HFSYADGRETLQDVSFTVMPG-----QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp EEE-EEESSTTCEEEEEEEEEECTT-----CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred EEE-EEEcCCCCceeeeeeEEEcCC-----CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 344 889975456799999999888 68999999999999999999999999999985 22222 1359
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchh-----------hccCcCcCChhHHHHHHHHHHHcc
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQL-----------MDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
+|+||++.. |..||++++..... ......+.++++..++.++ ..+...+|||||||||+|||||++
T Consensus 131 ~~v~Q~~~l-f~~Tv~eNi~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 131 GVVPQDTVL-FNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTST--TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcc-CcccHHHHHHhhcc--cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 999999754 57799999864321 1223445556666665544 345568999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+|+||||||||++||+.++..+.+.|+++. .++|+|+||||+..+.. ||||++|+++.. ...|++++++...
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l~~~~~-aD~i~vl~~G~i--v~~G~~~el~~~~ 279 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVC--ANRTTIVVAHRLSTVVN-ADQILVIKDGCI--VERGRHEALLSRG 279 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHH--TTSEEEEECCSHHHHHT-CSEEEEEETTEE--EEEECHHHHHHHT
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEEcChHHHHc-CCEEEEEECCEE--EEECCHHHHHhcC
Confidence 999999999999999999999999999984 37899999999999987 999999997554 4668999988753
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=327.46 Aligned_cols=211 Identities=23% Similarity=0.302 Sum_probs=151.5
Q ss_pred cccccCCcc-eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC
Q 040300 60 ICVKKCPFE-AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP 137 (605)
Q Consensus 60 ~~~~~cp~~-ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~ 137 (605)
.-.+-|+.. +|++.||. ++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|+|.
T Consensus 14 ~~~~~~~m~~~l~i~~l~--------~~y~~~-~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~-- 82 (263)
T 2olj_A 14 LVPRGSHMLQMIDVHQLK--------KSFGSL-EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII-- 82 (263)
T ss_dssp --------CCSEEEEEEE--------EEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE--
T ss_pred cccCCCCchheEEEEeEE--------EEECCE-EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE--
Confidence 333444432 68888765 466543 2455555 3579999999999999999999999999999999985
Q ss_pred CChhhhhhhhccchhh--hhHHHHHHHHHHHhhcccccccchh-hhhchhhh----h--cCchHHHHHHHHHHhhcCCch
Q 040300 138 PDWQEILTYFRGSELQ--NYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ----V--LDQKDERDMKADLCTDLDLNQ 208 (605)
Q Consensus 138 ~~~~~~~~~~~g~~l~--~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~----~--l~~~~~~~~~~~~l~~l~L~~ 208 (605)
+.|.++. ....... .....+.+|.....+. .+..++.. . +......+++.++++.++|.+
T Consensus 83 ---------~~g~~i~~~~~~~~~~--~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 151 (263)
T 2olj_A 83 ---------IDGINLKAKDTNLNKV--REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD 151 (263)
T ss_dssp ---------ETTEESSSTTCCHHHH--HHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG
T ss_pred ---------ECCEECCCccccHHHH--hCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch
Confidence 2232221 0000000 0112334443322222 11111111 0 112233567889999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
.+++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.++|+++.++|+|||+||||++++..+||+|++
T Consensus 152 ~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~ 231 (263)
T 2olj_A 152 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLF 231 (263)
T ss_dssp GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred HhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999987799999999999999999999999
Q ss_pred EeCc
Q 040300 289 LYGK 292 (605)
Q Consensus 289 l~g~ 292 (605)
|+.+
T Consensus 232 l~~G 235 (263)
T 2olj_A 232 MDGG 235 (263)
T ss_dssp EETT
T ss_pred EECC
Confidence 9743
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=321.00 Aligned_cols=202 Identities=23% Similarity=0.287 Sum_probs=149.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|++. +
T Consensus 4 ~l~~~~l--------~~~y~~~-~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~-----------~ 63 (224)
T 2pcj_A 4 ILRAENI--------KKVIRGY-EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF-----------L 63 (224)
T ss_dssp EEEEEEE--------EEEETTE-EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEE-----------E
T ss_pred EEEEEeE--------EEEECCE-eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-----------E
Confidence 5777765 4566542 3455555 3579999999999999999999999999999999985 2
Q ss_pred ccchhhhhHHHHHH--HHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCCh
Q 040300 148 RGSELQNYFTRILE--DNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219 (605)
Q Consensus 148 ~g~~l~~~~~~~~~--~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSG 219 (605)
.|.++..+...... ......+.+|.....+. .+..++.. . +.....++++.++++.+||.+.+++++.+|||
T Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 143 (224)
T 2pcj_A 64 EGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSG 143 (224)
T ss_dssp TTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCH
T ss_pred CCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCH
Confidence 23322111000000 00122334444322221 11111110 0 11123456788999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||||||+||+||+.+|++|||||||++||+..+..+.++|+++.++|+|||+||||++++ .+||++++|+.
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~ 214 (224)
T 2pcj_A 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKD 214 (224)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEET
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999987799999999999998 79999999964
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-39 Score=322.83 Aligned_cols=200 Identities=20% Similarity=0.325 Sum_probs=162.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+|
T Consensus 8 ~~~y~~~~~vl~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 82 (243)
T 1mv5_A 8 DFAYDDSEQILRDISFEAQPN-----SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVS 82 (243)
T ss_dssp EECSSSSSCSEEEEEEEECTT-----EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred EEEeCCCCceEEEeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEc
Confidence 677843234689999999988 68999999999999999999999999999985 22211 23599999
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
|+... +..||++++...... ......+.++++.+++.++.+ +++.+|||||||||+|||||+++|++
T Consensus 83 q~~~l-~~~tv~enl~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 83 QDSAI-MAGTIRENLTYGLEG-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp CSSCC-CCEEHHHHTTSCTTS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred CCCcc-ccccHHHHHhhhccC-CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 98754 456999987543111 123445677888888876654 45679999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||||||++||+.++..+++.|+++. .|+|||+||||++++. .|||+++|+++.. ...++++++...
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i--~~~g~~~~~~~~ 227 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLSTIV-DADKIYFIEKGQI--TGSGKHNELVAT 227 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHHHHH-HCSEEEEEETTEE--CCCSCHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChHHHH-hCCEEEEEECCEE--EEeCCHHHHHhc
Confidence 99999999999999999999999985 4899999999999886 5999999986543 356888888654
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-39 Score=326.25 Aligned_cols=203 Identities=24% Similarity=0.359 Sum_probs=151.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++||.. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|+|. +
T Consensus 6 ~l~i~~l~--------~~y~~~-~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~-----------~ 65 (262)
T 1b0u_A 6 KLHVIDLH--------KRYGGH-EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII-----------V 65 (262)
T ss_dssp CEEEEEEE--------EEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-----------E
T ss_pred eEEEeeEE--------EEECCE-EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-----------E
Confidence 57777754 567643 3455555 3579999999999999999999999999999999985 2
Q ss_pred ccchhhh----------hHH-HHHHHHHHHhhcccccccchh-hhhchhhh----h--cCchHHHHHHHHHHhhcCCchh
Q 040300 148 RGSELQN----------YFT-RILEDNLKAIIKPQYVDHIPK-AVQGNVGQ----V--LDQKDERDMKADLCTDLDLNQV 209 (605)
Q Consensus 148 ~g~~l~~----------~~~-~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~----~--l~~~~~~~~~~~~l~~l~L~~~ 209 (605)
.|.++.. +.. ....-.....+.+|.....+. .+..++.. . +.....++++.++++.+||.+.
T Consensus 66 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 145 (262)
T 1b0u_A 66 NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER 145 (262)
T ss_dssp TTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH
T ss_pred CCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCch
Confidence 2322210 000 000001122334444322222 11111111 0 1122335678899999999998
Q ss_pred -hcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 210 -IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 210 -~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
+++++.+|||||||||+||+||+.+|++||||||||+||+..+..+.++|+++.++|+|||+||||++++..+||+|++
T Consensus 146 ~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~ 225 (262)
T 1b0u_A 146 AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF 225 (262)
T ss_dssp HHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEE
T ss_pred hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999987799999999999999999999999
Q ss_pred EeC
Q 040300 289 LYG 291 (605)
Q Consensus 289 l~g 291 (605)
|+.
T Consensus 226 l~~ 228 (262)
T 1b0u_A 226 LHQ 228 (262)
T ss_dssp EET
T ss_pred EEC
Confidence 974
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=326.93 Aligned_cols=202 Identities=26% Similarity=0.391 Sum_probs=153.2
Q ss_pred CcceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 66 PFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 66 p~~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
|..+|++.|| +++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|+|.
T Consensus 8 ~~~~l~~~~l--------~~~~~~~-~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~--------- 69 (266)
T 4g1u_C 8 PVALLEASHL--------HYHVQQQ-ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECH--------- 69 (266)
T ss_dssp CCCEEEEEEE--------EEEETTE-EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEE---------
T ss_pred CcceEEEEeE--------EEEeCCe-eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---------
Confidence 3346777775 4567653 3455555 3579999999999999999999999999999999985
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc-------CchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL-------DQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l-------~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
+.|.++.......... ...+.+|.....+. .++.+.+ .....++++.++++.++|.+++++++.+|
T Consensus 70 --~~g~~~~~~~~~~~~~--~i~~v~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 142 (266)
T 4g1u_C 70 --LLGQNLNSWQPKALAR--TRAVMRQYSELAFP---FSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVL 142 (266)
T ss_dssp --ETTEETTTSCHHHHHH--HEEEECSCCCCCSC---CBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGC
T ss_pred --ECCEECCcCCHHHHhh--eEEEEecCCccCCC---CCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccC
Confidence 3343332221111111 12233343222111 1222211 22345677899999999999999999999
Q ss_pred ChHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 218 SGGELQRFAIAVVAVQ------NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~------~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
||||||||+|||||++ +|++||||||||+||+..+..+.++|+++.++ ++|||+||||++++..+||+|++|+
T Consensus 143 SgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~ 222 (266)
T 4g1u_C 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLA 222 (266)
T ss_dssp CHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEE
Confidence 9999999999999999 99999999999999999999999999999765 5799999999999999999999997
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
.+
T Consensus 223 ~G 224 (266)
T 4g1u_C 223 QG 224 (266)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-39 Score=337.78 Aligned_cols=205 Identities=22% Similarity=0.336 Sum_probs=154.6
Q ss_pred eEEEecCCcccCCCceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
+|++.||.+ +|+.. ...|++++ .+.+||++||+||||||||||+|+|+|+++|+.|+|.
T Consensus 24 mi~v~~ls~--------~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~--------- 86 (366)
T 3tui_C 24 MIKLSNITK--------VFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL--------- 86 (366)
T ss_dssp CEEEEEEEE--------EEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---------
T ss_pred eEEEEeEEE--------EeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEE---------
Confidence 688887654 56431 12456665 4589999999999999999999999999999999985
Q ss_pred hhhccchhhhhHHHHHH-HHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 145 TYFRGSELQNYFTRILE-DNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~-~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
+.|.++......... -.....+.+|.....+. .+..++... ......++++.++++.+||.+.+++++.+|
T Consensus 87 --i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~L 164 (366)
T 3tui_C 87 --VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL 164 (366)
T ss_dssp --ETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTS
T ss_pred --ECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 333333221111000 01123344444333332 122222110 123345678999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||||||+|||||+.+|++||||||||+||+..+..++++|+++.++ |.|||+||||++++..+||+|++|+.+
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G 240 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNG 240 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999764 999999999999999999999999743
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-39 Score=326.42 Aligned_cols=201 Identities=18% Similarity=0.210 Sum_probs=161.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~--~~~~~--------~~~i~ 416 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|++ +|++|++. +..+. ...++
T Consensus 27 ~~~y~~-~~vl~~vsl~i~~G-----e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 100 (267)
T 2zu0_C 27 HVSVED-KAILRGLSLDVHPG-----EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIF 100 (267)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEE
T ss_pred EEEECC-EEEEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEE
Confidence 778865 45789999999888 689999999999999999999994 68999985 22221 12489
Q ss_pred eecCcCCCCCcCcHHHHHHhhh---c---cC--CCC---HHHHHHHHhhcCCc-hhhccCcC-cCChhHHHHHHHHHHHc
Q 040300 417 YKPQKISPKFQSTVRHLLHQKI---R---DS--YTH---PQFVSDVMKPLLIE-QLMDQEVV-NLSGGELQRVALCLCLG 483 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~---~---~~--~~~---~~~~~~~l~~l~l~-~~~~~~~~-~LSGGe~QRvaiA~aL~ 483 (605)
|++|+.......|+.+++.... . .. ... ...+.++++.+++. ...++++. +|||||||||+|||||+
T Consensus 101 ~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~ 180 (267)
T 2zu0_C 101 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 180 (267)
T ss_dssp EECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHH
T ss_pred EEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 9999976656678988764311 0 10 111 23567899999996 57889987 59999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh-cCEEEEEeCCcceeeecCChhhhh
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL-ADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~-adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
.+|+||||||||++||+.++..++++|+++. +.|.|||+||||++++..+ |||+++|+++.. ...++++++.
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~-~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~ 253 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLR-DGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI--VKSGDFTLVK 253 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTC-CSSCEEEEECSSGGGGGTSCCSEEEEEETTEE--EEEECTTHHH
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEeeCHHHHHhhcCCEEEEEECCEE--EEEcCHHHHh
Confidence 9999999999999999999999999999984 4589999999999999886 999999986543 3456777654
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=322.52 Aligned_cols=203 Identities=21% Similarity=0.317 Sum_probs=151.2
Q ss_pred cceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 67 FEAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 67 ~~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
..+|++.||.+ +|+.. ..|.+++ .+.+||++||+||||||||||+|+|+|+++|+.|++.
T Consensus 13 ~~~l~i~~l~~--------~y~~~-~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~---------- 73 (256)
T 1vpl_A 13 MGAVVVKDLRK--------RIGKK-EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT---------- 73 (256)
T ss_dssp -CCEEEEEEEE--------EETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE----------
T ss_pred CCeEEEEEEEE--------EECCE-EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE----------
Confidence 45888888654 66542 3455555 3579999999999999999999999999999999985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCCh
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSG 219 (605)
+.|.++...... . .-..++.+|.....+. .+..++.. . ......++++.++++.+||.+.+++++.+|||
T Consensus 74 -~~g~~~~~~~~~-~--~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSg 149 (256)
T 1vpl_A 74 -VFGKNVVEEPHE-V--RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK 149 (256)
T ss_dssp -ETTEETTTCHHH-H--HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCH
T ss_pred -ECCEECCccHHH-H--hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCH
Confidence 223222110000 0 0112233443222221 11111110 0 11122346788999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||||+||+||+.+|++|||||||++||+..+..+.++|+++.++|+|||+||||++++..+||++++|+.+
T Consensus 150 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G 222 (256)
T 1vpl_A 150 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNG 222 (256)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999877999999999999999999999999753
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=323.87 Aligned_cols=203 Identities=21% Similarity=0.297 Sum_probs=150.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|++..
T Consensus 7 ~l~i~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~----------- 66 (257)
T 1g6h_A 7 ILRTENI--------VKYFGEF-KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF----------- 66 (257)
T ss_dssp EEEEEEE--------EEEETTE-EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE-----------
T ss_pred EEEEeee--------EEEECCE-eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------
Confidence 5777765 4577643 3566666 36799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh---h---------------cCchHHHHHHHHHHhhcCCch
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ---V---------------LDQKDERDMKADLCTDLDLNQ 208 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~---------------l~~~~~~~~~~~~l~~l~L~~ 208 (605)
.|.++........ ......+.+|.....+. .+..++.. . ......++++.++++.+||++
T Consensus 67 ~g~~~~~~~~~~~-~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 145 (257)
T 1g6h_A 67 ENKDITNKEPAEL-YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145 (257)
T ss_dssp TTEECTTCCHHHH-HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG
T ss_pred CCEECCCCCHHHH-HhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch
Confidence 2222211000000 00112233333222221 11111110 0 112234567889999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
.+++++.+|||||||||+||+||+.+|++||||||||+||+..+..+.++|+++.++|+|||+||||++++..+||+|++
T Consensus 146 ~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~ 225 (257)
T 1g6h_A 146 LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYV 225 (257)
T ss_dssp GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEE
T ss_pred hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999987799999999999999999999999
Q ss_pred EeCc
Q 040300 289 LYGK 292 (605)
Q Consensus 289 l~g~ 292 (605)
|+.+
T Consensus 226 l~~G 229 (257)
T 1g6h_A 226 MFNG 229 (257)
T ss_dssp EETT
T ss_pred EECC
Confidence 9753
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=340.60 Aligned_cols=204 Identities=25% Similarity=0.295 Sum_probs=149.8
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++||.. ..|++++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|..
T Consensus 4 ~l~i~~l--------s~~y~~~-~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i----------- 63 (359)
T 3fvq_A 4 ALHIGHL--------SKSFQNT-PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL----------- 63 (359)
T ss_dssp CEEEEEE--------EEEETTE-EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE-----------
T ss_pred EEEEEeE--------EEEECCE-EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE-----------
Confidence 5777765 5577653 3466666 46899999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++...............+.+|.....|. .+..++... ......+++++++++.++|++++++++.+|||||
T Consensus 64 ~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq 143 (359)
T 3fvq_A 64 SGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQ 143 (359)
T ss_dssp TTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHH
T ss_pred CCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence 1211100000000000011222332222222 111122111 1234456789999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||||+.+|++||||||||+||+..+..+.+.|+++.+ .|.|||+||||++++..+||+|++|+.+
T Consensus 144 ~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G 215 (359)
T 3fvq_A 144 QQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQG 215 (359)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECC
Confidence 9999999999999999999999999999999999998888754 5999999999999999999999999643
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-39 Score=339.88 Aligned_cols=200 Identities=25% Similarity=0.295 Sum_probs=151.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++||.. ..|++++ .+++||+++|+||||||||||+|+|+|+++|+.|+|..
T Consensus 3 ~l~~~~l--------~~~yg~~-~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i----------- 62 (381)
T 3rlf_A 3 SVQLQNV--------TKAWGEV-VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI----------- 62 (381)
T ss_dssp CEEEEEE--------EEEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE-----------
T ss_pred EEEEEeE--------EEEECCE-EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEE-----------
Confidence 4666664 5577653 3466666 45899999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhhh-----hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVGQ-----VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++...... .....+.+|.....|.. +..++.. .+.+...++++.++++.++|.+++++++.+|||||
T Consensus 63 ~G~~~~~~~~~----~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGq 138 (381)
T 3rlf_A 63 GEKRMNDTPPA----ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQ 138 (381)
T ss_dssp TTEECTTCCGG----GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHH
T ss_pred CCEECCCCCHH----HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHH
Confidence 22221110000 00112223332222221 1111111 01233456789999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 139 rQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G 210 (381)
T 3rlf_A 139 RQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210 (381)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999765 999999999999999999999999743
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=319.60 Aligned_cols=203 Identities=22% Similarity=0.326 Sum_probs=149.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|++. +
T Consensus 6 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-----------~ 65 (240)
T 1ji0_A 6 VLEVQSL--------HVYYGAI-HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII-----------F 65 (240)
T ss_dssp EEEEEEE--------EEEETTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-----------E
T ss_pred eEEEEeE--------EEEECCe-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-----------E
Confidence 5777765 4566542 3455555 3579999999999999999999999999999999985 2
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh----cCchHHHHHHHHHHhhcC-CchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV----LDQKDERDMKADLCTDLD-LNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~----l~~~~~~~~~~~~l~~l~-L~~~~dr~v~~LSGGe 221 (605)
.|.++......... .....+.+|.....+. .+..++... .......++++++++.++ |.+.+++++.+|||||
T Consensus 66 ~g~~~~~~~~~~~~-~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq 144 (240)
T 1ji0_A 66 NGQDITNKPAHVIN-RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGE 144 (240)
T ss_dssp TTEECTTCCHHHHH-HTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHH
T ss_pred CCEECCCCCHHHHH-hCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHH
Confidence 23222111000000 0112233443222221 111111100 112233566788999995 9999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||||+.+|++|||||||++||+..+..+.++|+++.++|+|||+||||++++..+||++++|..+
T Consensus 145 ~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G 215 (240)
T 1ji0_A 145 QQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETG 215 (240)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999777999999999999999999999999753
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-38 Score=311.79 Aligned_cols=194 Identities=22% Similarity=0.326 Sum_probs=153.1
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCc
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQ 427 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~ 427 (605)
+++|++ ....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.. .++|+||++.. +.
T Consensus 13 ~~~y~~~~~~il~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g-~i~~v~q~~~~-~~ 82 (229)
T 2pze_A 13 TAFWEEGGTPVLKDINFKIERG-----QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSG-RISFCSQFSWI-MP 82 (229)
T ss_dssp EECSSTTSCCSEEEEEEEEETT-----CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ECS-CEEEECSSCCC-CS
T ss_pred EEEeCCCCceeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCcCCccEEE---ECC-EEEEEecCCcc-cC
Confidence 777852 234689999999888 68999999999999999999999999999984 211 59999998765 44
Q ss_pred CcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhh-----------ccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 428 STVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLM-----------DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 428 ~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
.||++++..... . ......++++.+++.+.+ ++++.+|||||||||+|||||+++|++|||||||+
T Consensus 83 ~tv~enl~~~~~--~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts 159 (229)
T 2pze_A 83 GTIKENIIFGVS--Y-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 159 (229)
T ss_dssp BCHHHHHHTTSC--C-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred CCHHHHhhccCC--c-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 699999864311 1 122234455555655433 23468999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKV-IKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~-l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+||+.++..+++. ++++. .++|||+||||++++. .|||+++|+++.. ...++++++...
T Consensus 160 ~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i--~~~g~~~~~~~~ 219 (229)
T 2pze_A 160 YLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHLK-KADKILILHEGSS--YFYGTFSELQNL 219 (229)
T ss_dssp TSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHHH-HCSEEEEEETTEE--EEEECHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHHHH-hCCEEEEEECCEE--EEECCHHHHHhc
Confidence 9999999999986 45552 3789999999999986 4999999986543 355788887654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=315.78 Aligned_cols=198 Identities=20% Similarity=0.326 Sum_probs=159.4
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+|+|+|+++| +|++. +..+. ...++|
T Consensus 24 ~~~y~~~~~~~vl~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~ 97 (260)
T 2ghi_A 24 NFSYPKQTNHRTLKSINFFIPSG-----TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGI 97 (260)
T ss_dssp EECCTTCCSSCSEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEE
T ss_pred EEEeCCCCcCceeEeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEE
Confidence 7778642 24689999999888 68999999999999999999999987 89885 22221 135999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhh-----------ccCcCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLM-----------DQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+||++.. +..||++++..... ......+.++++.+++.+.. ++++.+|||||||||+|||||+++|
T Consensus 98 v~Q~~~l-~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 98 VPQDTIL-FNETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp ECSSCCC-CSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EcCCCcc-cccCHHHHHhccCC--CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 9999754 45799998864311 12334556777777776542 4678899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+||||||||++||+.++..++++|+++. + ++|||+||||++++. .|||+++|+++.. ...+++++++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~-~~d~i~~l~~G~i--~~~g~~~~l~~~ 243 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTIS-SAESIILLNKGKI--VEKGTHKDLLKL 243 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGST-TCSEEEEEETTEE--EEEECHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-hCCEEEEEECCEE--EEECCHHHHHhc
Confidence 9999999999999999999999999984 3 899999999999986 4999999986543 356788887654
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-38 Score=320.05 Aligned_cols=197 Identities=27% Similarity=0.367 Sum_probs=147.6
Q ss_pred eEEEecCCcccCCCceEEeC-CC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYG-PN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI 143 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg-~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~ 143 (605)
+|++.|| +++|+ .. ...|++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++.
T Consensus 2 ~l~~~~l--------~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~-------- 65 (266)
T 2yz2_A 2 RIEVVNV--------SHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL-------- 65 (266)
T ss_dssp CEEEEEE--------EEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE--------
T ss_pred EEEEEEE--------EEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE--------
Confidence 4666664 55665 12 23455555 3579999999999999999999999999999999985
Q ss_pred hhhhccchhhhhHHHHHHHHHHHhhccccc-ccchhhhhchhhhh--------cCchHHHHHHHHHHhhcCCc--hhhcc
Q 040300 144 LTYFRGSELQNYFTRILEDNLKAIIKPQYV-DHIPKAVQGNVGQV--------LDQKDERDMKADLCTDLDLN--QVIDR 212 (605)
Q Consensus 144 ~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~-~~~~~~~~~~v~~~--------l~~~~~~~~~~~~l~~l~L~--~~~dr 212 (605)
+.|.++... . . .-...+.+|.. ...+ ..++.+. +.....++++.++++.+||. +.+++
T Consensus 66 ---~~g~~~~~~--~-~--~~~i~~v~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 134 (266)
T 2yz2_A 66 ---YDGERKKGY--E-I--RRNIGIAFQYPEDQFF---AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 134 (266)
T ss_dssp ---ETTEECCHH--H-H--GGGEEEECSSGGGGCC---CSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTC
T ss_pred ---ECCEECchH--H-h--hhhEEEEeccchhhcC---CCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccC
Confidence 223222110 0 0 00112223321 0111 1122211 11122346788999999999 99999
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
++.+|||||||||+||+||+.+|++|||||||++||+..+..+.++|+++.++|+|||+||||++++..+||++++|+.+
T Consensus 135 ~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 135 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999766999999999999999999999999743
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=316.24 Aligned_cols=192 Identities=25% Similarity=0.352 Sum_probs=141.8
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+. .|.+++ .+.+ |++||+||||||||||+|+|+|+++|+.|++.. .|.++..... .
T Consensus 6 ~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~--~ 68 (240)
T 2onk_A 6 RAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL-----------NGADITPLPP--E 68 (240)
T ss_dssp EEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE-----------TTEECTTSCT--T
T ss_pred EEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEECCcCch--h
Confidence 35567764 255555 3478 999999999999999999999999999999852 2221110000 0
Q ss_pred HHHHHHhhcccccccchh-hhhchhhhhc---CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQVL---DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE 236 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~~l---~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~ 236 (605)
....++.+|.....+. .+..++.... .....+++++++++.+||.+.+++++.+|||||||||+||+||+++|+
T Consensus 69 --~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 69 --RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp --TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred --hCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 0011222332221111 1111111101 011235678899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 237 IYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 237 vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||||++||+..+..+.++|+++.++ |+|||+||||++++..+||++++|+.+
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G 203 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNG 203 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETT
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999764 899999999999999999999999743
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-38 Score=313.42 Aligned_cols=195 Identities=23% Similarity=0.335 Sum_probs=154.2
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCc
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQ 427 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~ 427 (605)
+++|++ ....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.. .++|+||++. .+.
T Consensus 10 ~~~y~~~~~~vl~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g-~i~~v~Q~~~-~~~ 79 (237)
T 2cbz_A 10 TFTWARSDPPTLNGITFSIPEG-----ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA---IKG-SVAYVPQQAW-IQN 79 (237)
T ss_dssp EEESCTTSCCSEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEE---ECS-CEEEECSSCC-CCS
T ss_pred EEEeCCCCCceeeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECC-EEEEEcCCCc-CCC
Confidence 777863 234689999999888 68999999999999999999999999999984 211 5999999965 457
Q ss_pred CcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-----------hhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 428 STVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-----------LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 428 ~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
.||++++..... ... ....++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 80 ~tv~enl~~~~~--~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 80 DSLRENILFGCQ--LEE-PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp EEHHHHHHTTSC--CCT-THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred cCHHHHhhCccc--cCH-HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 899998864321 111 12233444333321 2568899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH---HHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 497 YLDSEQRIVAAKVIK---RFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~---~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+||+.++..+++.|. ++ . .|+|||+||||++++. .|||+++|+++.. ...++++++.+..
T Consensus 157 ~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~~-~~d~v~~l~~G~i--~~~g~~~~~~~~~ 219 (237)
T 2cbz_A 157 AVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSYLP-QVDVIIVMSGGKI--SEMGSYQELLARD 219 (237)
T ss_dssp TSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTTGG-GSSEEEEEETTEE--EEEECHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHHHH-hCCEEEEEeCCEE--EEeCCHHHHhhcc
Confidence 999999999999985 33 2 4899999999999885 6999999986543 3568888886653
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=331.25 Aligned_cols=200 Identities=24% Similarity=0.365 Sum_probs=149.0
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++||.. ..|++++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|..
T Consensus 3 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i----------- 62 (359)
T 2yyz_A 3 SIRVVNL--------KKYFGKV-KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF----------- 62 (359)
T ss_dssp CEEEEEE--------EEEETTE-EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE-----------
T ss_pred EEEEEEE--------EEEECCE-EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEE-----------
Confidence 4666665 5567643 2455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhhcC-----chHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQVLD-----QKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~l~-----~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++...... .....+.+|.....|. .+..++...+. ....++++.++++.++|++++++++.+|||||
T Consensus 63 ~g~~i~~~~~~----~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq 138 (359)
T 2yyz_A 63 DDVLVNDIPPK----YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQ 138 (359)
T ss_dssp TTEECTTSCGG----GTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred CCEECCCCChh----hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence 22221110000 0012223333222222 11112211111 11224678899999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 139 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G 210 (359)
T 2yyz_A 139 QQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQG 210 (359)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999765 999999999999999999999999743
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=331.20 Aligned_cols=201 Identities=23% Similarity=0.323 Sum_probs=148.0
Q ss_pred ceEEEecCCcccCCCceEEe-CCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRY-GPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~y-g~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
.+|++.||.+ +| |.. ..|.+++ .+.+||+++|+||||||||||||+|+|+++|+.|+|..
T Consensus 13 ~~l~~~~l~~--------~y~g~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i--------- 74 (355)
T 1z47_A 13 MTIEFVGVEK--------IYPGGA-RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI--------- 74 (355)
T ss_dssp EEEEEEEEEE--------CCTTST-TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE---------
T ss_pred ceEEEEEEEE--------EEcCCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE---------
Confidence 3688887655 45 432 1244444 24799999999999999999999999999999999852
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCCh
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSG 219 (605)
.|.++..... ......+.+|.....|. .+..++... +.....+++++++++.++|++++++++.+|||
T Consensus 75 --~g~~i~~~~~----~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSG 148 (355)
T 1z47_A 75 --GGKRVTDLPP----QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSG 148 (355)
T ss_dssp --TTEECTTCCG----GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCH
T ss_pred --CCEECCcCCh----hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCH
Confidence 1211110000 00001122222222221 111111100 12233457889999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|||+||||++++..+||+|++|+.+
T Consensus 149 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 222 (355)
T 1z47_A 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEG 222 (355)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999765 999999999999999999999999743
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=330.08 Aligned_cols=192 Identities=27% Similarity=0.388 Sum_probs=145.8
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. .|.+++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|. +.|.++..... .
T Consensus 7 l~~~y~~~--~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-----------~~g~~i~~~~~--~- 70 (348)
T 3d31_A 7 LSRKWKNF--SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL-----------LDGKDVTDLSP--E- 70 (348)
T ss_dssp EEEECSSC--EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEE-----------ETTEECTTSCH--H-
T ss_pred EEEEECCE--EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEE-----------ECCEECCCCch--h-
Confidence 45677653 456555 3589999999999999999999999999999999985 22322211100 0
Q ss_pred HHHHHhhcccccccchh-hhhchhhhhc---CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCE
Q 040300 162 DNLKAIIKPQYVDHIPK-AVQGNVGQVL---DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEI 237 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~-~~~~~v~~~l---~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~v 237 (605)
.....+.+|.....|. .+..++...+ ..... +++.++++.++|++++++++.+|||||||||+|||||+.+|++
T Consensus 71 -~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~l 148 (348)
T 3d31_A 71 -KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI 148 (348)
T ss_dssp -HHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred -hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 1112333443332232 1111211101 00112 6788999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 238 YMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 238 lllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||||||+||+..+..+.+.|+++.+ .|+|+|+||||++++..+||+|++|.++
T Consensus 149 LLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G 204 (348)
T 3d31_A 149 LLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204 (348)
T ss_dssp EEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSS
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999976 4999999999999999999999999643
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=314.75 Aligned_cols=198 Identities=22% Similarity=0.288 Sum_probs=145.3
Q ss_pred eEEEecCCcccCCCceEEeC-CCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYG-PNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg-~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+|++.|| +++|+ .. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|++.. ...+.+
T Consensus 4 ~l~i~~l--------~~~y~~~~-~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~----~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENL--------GFYYQAEN-FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV----YQSIGF 70 (253)
T ss_dssp EEEEEEE--------EEEETTTT-EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE----CSCEEE
T ss_pred eEEEeeE--------EEEeCCCC-eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE----eccEEE
Confidence 5677665 55676 32 3455555 35799999999999999999999999999999999851 110111
Q ss_pred hcc-chhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHH
Q 040300 147 FRG-SELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRF 225 (605)
Q Consensus 147 ~~g-~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRv 225 (605)
... ..+.. ...+.+++.....+. .+ ... .......++++++++.+||.+.+++++.+|||||||||
T Consensus 71 v~q~~~~~~--~~tv~enl~~~~~~~---------~~-~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 71 VPQFFSSPF--AYSVLDIVLMGRSTH---------IN-TFA-KPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLI 137 (253)
T ss_dssp ECSCCCCSS--CCBHHHHHHGGGGGG---------SC-TTC-CCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred EcCCCccCC--CCCHHHHHHHhhhhh---------cc-ccc-CCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHH
Confidence 100 00000 000111211100000 00 000 01123356788999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+||+||+.+|++|||||||++||+..+..+.++|+++.++ |+|||+||||++++..+||++++|+.+
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G 205 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQ 205 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999876 999999999999999999999999753
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-38 Score=331.28 Aligned_cols=200 Identities=25% Similarity=0.358 Sum_probs=149.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++||.. ..|.+++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|..
T Consensus 3 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i----------- 62 (362)
T 2it1_A 3 EIKLENI--------VKKFGNF-TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF----------- 62 (362)
T ss_dssp CEEEEEE--------EEESSSS-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE-----------
T ss_pred EEEEEeE--------EEEECCE-EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEE-----------
Confidence 4666665 4566543 2455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++...... .....+.+|.....|. .+..++... ......+++++++++.++|++++++++.+|||||
T Consensus 63 ~g~~i~~~~~~----~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq 138 (362)
T 2it1_A 63 DEKDVTELPPK----DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQ 138 (362)
T ss_dssp TTEECTTSCGG----GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHH
T ss_pred CCEECCcCCHh----HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHH
Confidence 22221110000 0011222332222221 111111110 1223345678999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 139 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 210 (362)
T 2it1_A 139 QQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREG 210 (362)
T ss_dssp HHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999765 999999999999999999999999743
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-38 Score=321.59 Aligned_cols=202 Identities=22% Similarity=0.207 Sum_probs=146.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|.+++ .+.+||++||+||||||||||+|+|+|+++|+.|+|..
T Consensus 21 ~l~~~~l--------~~~y~~~-~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~----------- 80 (279)
T 2ihy_A 21 LIQLDQI--------GRMKQGK-TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL----------- 80 (279)
T ss_dssp EEEEEEE--------EEEETTE-EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE-----------
T ss_pred eEEEEeE--------EEEECCE-EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE-----------
Confidence 5777775 4566543 3455555 35799999999999999999999999999999999852
Q ss_pred ccchhh--hhHHHHHHHHHHHhhccccccc-chh--hhhchhhh-------hc--CchHHHHHHHHHHhhcCCchhhccc
Q 040300 148 RGSELQ--NYFTRILEDNLKAIIKPQYVDH-IPK--AVQGNVGQ-------VL--DQKDERDMKADLCTDLDLNQVIDRN 213 (605)
Q Consensus 148 ~g~~l~--~~~~~~~~~~~~~~~~~q~~~~-~~~--~~~~~v~~-------~l--~~~~~~~~~~~~l~~l~L~~~~dr~ 213 (605)
.|.++. ....... .....+.+|.... ... .+..++.. .. ......+++.++++.+||.+.++++
T Consensus 81 ~g~~~~~~~~~~~~~--~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 158 (279)
T 2ihy_A 81 FGKMPGKVGYSAETV--RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY 158 (279)
T ss_dssp TTBCCC---CCHHHH--HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB
T ss_pred CCEEcccccCCHHHH--cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC
Confidence 121111 0000000 0001111221100 000 11111100 00 1123356788999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEE--EEEecCHhHHHhhcCEEEEEeC
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV--IVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tv--ivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|+++.++|+|| |+||||++++..+||+|++|+.
T Consensus 159 ~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~ 238 (279)
T 2ihy_A 159 IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKD 238 (279)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEET
T ss_pred hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999997668999 9999999999999999999974
Q ss_pred c
Q 040300 292 K 292 (605)
Q Consensus 292 ~ 292 (605)
+
T Consensus 239 G 239 (279)
T 2ihy_A 239 G 239 (279)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=332.08 Aligned_cols=201 Identities=23% Similarity=0.333 Sum_probs=149.1
Q ss_pred eEEEecCCcccCCCceEEeCCCce-eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTF-KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f-~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+|++.|| +++|+.... .|++++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|..
T Consensus 3 ~l~i~~l--------~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i---------- 64 (353)
T 1oxx_K 3 RIIVKNV--------SKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF---------- 64 (353)
T ss_dssp CEEEEEE--------EEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE----------
T ss_pred EEEEEeE--------EEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE----------
Confidence 4666665 456754321 455555 35799999999999999999999999999999999852
Q ss_pred hccchhhh-----hHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCC
Q 040300 147 FRGSELQN-----YFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 147 ~~g~~l~~-----~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
.|.++.. ... ......+.+|.....|. .+..++... +.....+++++++++.++|++++++++.
T Consensus 65 -~g~~i~~~~~~~~~~----~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~ 139 (353)
T 1oxx_K 65 -DDRLVASNGKLIVPP----EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR 139 (353)
T ss_dssp -TTEEEEETTEESSCG----GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred -CCEECcccccccCCh----hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChh
Confidence 1211110 000 00011222332222221 111111111 1123345678999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 140 ~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G 217 (353)
T 1oxx_K 140 ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKG 217 (353)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999764 999999999999999999999999743
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=330.36 Aligned_cols=200 Identities=25% Similarity=0.360 Sum_probs=147.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|.+++ .+.+||+++|+||||||||||||+|+|+++|+.|+|..
T Consensus 11 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i----------- 70 (372)
T 1v43_A 11 EVKLENL--------TKRFGNF-TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF----------- 70 (372)
T ss_dssp CEEEEEE--------EEEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE-----------
T ss_pred eEEEEEE--------EEEECCE-EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEE-----------
Confidence 5777765 4567542 2455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++...... .....+.+|.....|. .+..++... ......+++++++++.++|++++++++.+|||||
T Consensus 71 ~g~~i~~~~~~----~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq 146 (372)
T 1v43_A 71 GDRDVTYLPPK----DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQ 146 (372)
T ss_dssp TTEECTTSCGG----GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSC
T ss_pred CCEECCCCChh----hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHH
Confidence 12111100000 0011122222111111 111111110 1122345678999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 147 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 218 (372)
T 1v43_A 147 RQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRG 218 (372)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999765 999999999999999999999999743
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=329.33 Aligned_cols=197 Identities=24% Similarity=0.259 Sum_probs=164.7
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|+. ....+++++|++.+| |+++|+||||||||||+|+|+|+++ ++|+|. +..+. ...++|+
T Consensus 26 ~~~y~~~~~~~L~~vsl~i~~G-----e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v 99 (390)
T 3gd7_A 26 TAKYTEGGNAILENISFSISPG-----QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVI 99 (390)
T ss_dssp EEESSSSSCCSEEEEEEEECTT-----CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEE
T ss_pred EEEecCCCeEEeeceeEEEcCC-----CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEE
Confidence 788852 234789999999988 6899999999999999999999998 889885 22221 1469999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCc-----------CChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVN-----------LSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----------LSGGe~QRvaiA~aL~~~p~ 487 (605)
||+... |.+||++++... . ......+.++++.+++.++.++++.+ |||||||||+|||||+++|+
T Consensus 100 ~Q~~~l-f~~tv~enl~~~--~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 100 PQKVFI-FSGTFRKNLDPN--A-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp SCCCCC-CSEEHHHHHCTT--C-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred cCCccc-CccCHHHHhhhc--c-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 999754 567999998421 1 12345678899999999999999998 99999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||++||+..+..+.+.|+++. .+.|+|+||||++.+ ..||||++|+++.. ...++|++++..
T Consensus 176 lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~-~~aDri~vl~~G~i--~~~g~~~el~~~ 243 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAM-LECDQFLVIEENKV--RQYDSILELYHY 243 (390)
T ss_dssp EEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGG-TTCSEEEEEETTEE--EEESSHHHHHHC
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHH-HhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999999999863 479999999998765 45999999997554 456899998764
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=330.29 Aligned_cols=200 Identities=22% Similarity=0.368 Sum_probs=149.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+.+||+++|+||||||||||||+|+|+++|+.|+|..
T Consensus 3 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i----------- 62 (372)
T 1g29_1 3 GVRLVDV--------WKVFGEV-TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI----------- 62 (372)
T ss_dssp EEEEEEE--------EEEETTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE-----------
T ss_pred EEEEEeE--------EEEECCE-EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE-----------
Confidence 4666665 5567542 2455555 35799999999999999999999999999999999852
Q ss_pred ccchhhh------hHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCC
Q 040300 148 RGSELQN------YFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 148 ~g~~l~~------~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
.|.++.. ... ......+.+|.....|. .+..++... ......+++++++++.++|++++++++.
T Consensus 63 ~g~~~~~~~~~~~~~~----~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~ 138 (372)
T 1g29_1 63 GDKLVADPEKGIFVPP----KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138 (372)
T ss_dssp TTEEEEEGGGTEECCG----GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCEECccccccccCCH----hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcc
Confidence 1211110 000 00012223333222222 111111110 1223345678999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 139 ~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 216 (372)
T 1g29_1 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRG 216 (372)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999765 999999999999999999999999743
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=313.25 Aligned_cols=203 Identities=24% Similarity=0.292 Sum_probs=142.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcC--CCCCCceeeCCCChhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGK--LKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~--l~p~~G~i~~~~~~~~~~~ 145 (605)
+|++.|| +++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+ ++|+.|++.
T Consensus 3 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~---------- 63 (250)
T 2d2e_A 3 QLEIRDL--------WASIDGE-TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL---------- 63 (250)
T ss_dssp EEEEEEE--------EEEETTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEE----------
T ss_pred eEEEEeE--------EEEECCE-EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE----------
Confidence 4666665 5567543 3455555 3579999999999999999999999998 789999985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh----h----cCchHHHHHHHHHHhhcCC-chhhcccCC
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ----V----LDQKDERDMKADLCTDLDL-NQVIDRNVG 215 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~----~----l~~~~~~~~~~~~l~~l~L-~~~~dr~v~ 215 (605)
+.|.++......... ....++.+|.....+. .+...+.. . .......+++.++++.+|| .+..++++.
T Consensus 64 -~~g~~~~~~~~~~~~-~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 141 (250)
T 2d2e_A 64 -LDGENILELSPDERA-RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN 141 (250)
T ss_dssp -ETTEECTTSCHHHHH-HTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT
T ss_pred -ECCEECCCCCHHHHH-hCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 223222111000000 0111223333222111 01111100 0 0112234678889999999 588999999
Q ss_pred C-CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhh-cCEEEEEeCc
Q 040300 216 D-LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYL-SDFICCLYGK 292 (605)
Q Consensus 216 ~-LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~-~D~i~vl~g~ 292 (605)
+ |||||||||+|||||+++|++||||||||+||+..+..+.++|+++.++|+|||+||||++++..+ ||+|++|+.+
T Consensus 142 ~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G 220 (250)
T 2d2e_A 142 EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDG 220 (250)
T ss_dssp CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETT
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECC
Confidence 9 999999999999999999999999999999999999999999999977799999999999999988 5999999743
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=311.08 Aligned_cols=196 Identities=24% Similarity=0.301 Sum_probs=140.9
Q ss_pred eEEEecCCcccCCCceEEe-CCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRY-GPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~y-g~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
-|++.|| +++| +.+...|.+++ .+.+||++||+||||||||||+|+|+|+++|+.|+|.
T Consensus 7 ~~~~~~l--------~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~----------- 67 (247)
T 2ff7_A 7 DITFRNI--------RFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL----------- 67 (247)
T ss_dssp EEEEEEE--------EEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-----------
T ss_pred ceeEEEE--------EEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-----------
Confidence 4666665 4566 22223455555 3579999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhhcc-----------
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVIDR----------- 212 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~dr----------- 212 (605)
+.|.++.......... ..++.+|.... +..++.+.+. .....+++.++++.+++.+++++
T Consensus 68 i~g~~~~~~~~~~~~~--~i~~v~Q~~~l----~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~ 141 (247)
T 2ff7_A 68 IDGHDLALADPNWLRR--QVGVVLQDNVL----LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 141 (247)
T ss_dssp ETTEETTTSCHHHHHH--HEEEECSSCCC----TTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCST
T ss_pred ECCEEhhhCCHHHHHh--cEEEEeCCCcc----ccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhC
Confidence 3333332211110111 12333443221 2223333221 11123456677777777665554
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++.+|||||||||+|||||+++|++||||||||+||+..+..+.++|+++. +|+|||+||||++++.. ||+|++|..
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~-~d~v~~l~~ 218 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKN-ADRIIVMEK 218 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTT-SSEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999995 59999999999999865 999999974
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=309.61 Aligned_cols=195 Identities=28% Similarity=0.404 Sum_probs=146.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhc
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFR 148 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~ 148 (605)
+|++.||.+. .+. .+.+|.+ .+||+++|+||||||||||+|+|+|+++|+ |++. +.
T Consensus 4 ~l~~~~l~~~---~vl---~~vsl~i------~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~-----------~~ 59 (249)
T 2qi9_C 4 VMQLQDVAES---TRL---GPLSGEV------RAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQ-----------FA 59 (249)
T ss_dssp EEEEEEEEET---TTE---EEEEEEE------ETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEE-----------ET
T ss_pred EEEEEceEEE---EEE---eeeEEEE------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEE-----------EC
Confidence 5778877653 111 1224555 699999999999999999999999999999 9985 23
Q ss_pred cchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC----chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHH
Q 040300 149 GSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQR 224 (605)
Q Consensus 149 g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~----~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QR 224 (605)
|.++..+...... ....+.+|.....+. .++.+.+. ....++++.++++.+||.+.+++++.+||||||||
T Consensus 60 g~~~~~~~~~~~~--~~i~~v~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr 134 (249)
T 2qi9_C 60 GQPLEAWSATKLA--LHRAYLSQQQTPPFA---TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQR 134 (249)
T ss_dssp TEEGGGSCHHHHH--HHEEEECSCCCCCTT---CBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHH
T ss_pred CEECCcCCHHHHh--ceEEEECCCCccCCC---CcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHH
Confidence 3333221111111 112334443322221 12322210 00015678899999999999999999999999999
Q ss_pred HHHHHHHccCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 225 FAIAVVAVQNAE-------IYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 225 vaIA~aL~~~p~-------vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||+||+.+|+ +|||||||++||+..+..+.++|+++.++|+|||+||||++++..+||++++|+.+
T Consensus 135 v~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G 209 (249)
T 2qi9_C 135 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGG 209 (249)
T ss_dssp HHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999 99999999999999999999999999766999999999999999999999999743
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=312.23 Aligned_cols=194 Identities=23% Similarity=0.363 Sum_probs=144.9
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.+|++.||. ++|+. ..|.+++ .+.+||+++|+||||||||||+|+|+|+++|+.|++..
T Consensus 9 ~~l~~~~ls--------~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~---------- 68 (214)
T 1sgw_A 9 SKLEIRDLS--------VGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY---------- 68 (214)
T ss_dssp CEEEEEEEE--------EESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE----------
T ss_pred ceEEEEEEE--------EEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE----------
Confidence 367777765 45654 3455555 35799999999999999999999999999999999852
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhh---hhcC-chHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVG---QVLD-QKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~---~~l~-~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++..+ .....+.+|.....+. .+..++. .... ... .+++.++++.+||++. ++++.+|||||
T Consensus 69 -~g~~~~~~-------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGq 138 (214)
T 1sgw_A 69 -NGVPITKV-------KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN-KNEIMDALESVEVLDL-KKKLGELSQGT 138 (214)
T ss_dssp -TTEEGGGG-------GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHH
T ss_pred -CCEEhhhh-------cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchH-HHHHHHHHHHcCCCcC-CCChhhCCHHH
Confidence 22222100 0011223332221111 1111111 0000 112 4678899999999988 99999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||++||+||+.+|++|||||||++||+..+..+.++|+++.++|+|||+||||++++..+||+++++.+
T Consensus 139 kqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~ 208 (214)
T 1sgw_A 139 IRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYST 208 (214)
T ss_dssp HHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCC
Confidence 9999999999999999999999999999999999999999976689999999999999999999887654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=311.30 Aligned_cols=199 Identities=21% Similarity=0.310 Sum_probs=143.9
Q ss_pred ceEEEecCCcccCCCceEEeCC--CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGP--NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~--~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
.+|++.||.+ +|+. ....|.+++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|.
T Consensus 15 ~~l~~~~l~~--------~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~--------- 77 (271)
T 2ixe_A 15 GLVKFQDVSF--------AYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVL--------- 77 (271)
T ss_dssp CCEEEEEEEE--------CCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---------
T ss_pred ceEEEEEEEE--------EeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE---------
Confidence 4688887654 5543 112344444 3479999999999999999999999999999999985
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc-------Cc-hH-----HHHHHHHHHhhc--CCchh
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL-------DQ-KD-----ERDMKADLCTDL--DLNQV 209 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l-------~~-~~-----~~~~~~~~l~~l--~L~~~ 209 (605)
+.|.++..+....... ...+.+|.....+ .++.+.+ .. .. ....+.++++.+ |+...
T Consensus 78 --~~g~~i~~~~~~~~~~--~i~~v~Q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~ 149 (271)
T 2ixe_A 78 --LDGEPLVQYDHHYLHT--QVAAVGQEPLLFG----RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE 149 (271)
T ss_dssp --ETTEEGGGBCHHHHHH--HEEEECSSCCCCS----SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSB
T ss_pred --ECCEEcccCCHHHHhc--cEEEEecCCcccc----ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhh
Confidence 2333332211111111 1233344322211 1222211 01 11 112345677777 78888
Q ss_pred hcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEE
Q 040300 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 210 ~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
+++++.+|||||||||+|||||+.+|++||||||||+||+..+..+.++|+++.+ .|+|||+||||++++.. ||+|++
T Consensus 150 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~ 228 (271)
T 2ixe_A 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILF 228 (271)
T ss_dssp CCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEE
T ss_pred hcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEE
Confidence 8999999999999999999999999999999999999999999999999999975 48999999999999875 999999
Q ss_pred EeCc
Q 040300 289 LYGK 292 (605)
Q Consensus 289 l~g~ 292 (605)
|..+
T Consensus 229 l~~G 232 (271)
T 2ixe_A 229 LKEG 232 (271)
T ss_dssp EETT
T ss_pred EECC
Confidence 9743
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=310.01 Aligned_cols=202 Identities=30% Similarity=0.399 Sum_probs=145.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcC--CCCCCceeeCCCChhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGK--LKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~--l~p~~G~i~~~~~~~~~~~ 145 (605)
+|++.|| +++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+ ++|+.|+|.
T Consensus 20 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~---------- 80 (267)
T 2zu0_C 20 MLSIKDL--------HVSVEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE---------- 80 (267)
T ss_dssp CEEEEEE--------EEEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEE----------
T ss_pred eEEEEeE--------EEEECCE-EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE----------
Confidence 5777775 4566542 3455555 3579999999999999999999999999 468999985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhh----hh--------cCchHHHHHHHHHHhhcCCc-hhhc
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVG----QV--------LDQKDERDMKADLCTDLDLN-QVID 211 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~----~~--------l~~~~~~~~~~~~l~~l~L~-~~~d 211 (605)
+.|.++..+...... .....+.+|.....+.. +...+. .. ....+..++++++++.+||. .+.+
T Consensus 81 -~~g~~i~~~~~~~~~-~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 158 (267)
T 2zu0_C 81 -FKGKDLLALSPEDRA-GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLT 158 (267)
T ss_dssp -ETTEEGGGSCHHHHH-HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTT
T ss_pred -ECCEECCcCCHHHHh-hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhc
Confidence 223322211100000 01122233332211110 000000 00 01122346788999999996 5889
Q ss_pred ccCC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhh-cCEEEEE
Q 040300 212 RNVG-DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYL-SDFICCL 289 (605)
Q Consensus 212 r~v~-~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~-~D~i~vl 289 (605)
+++. +|||||||||+|||||+.+|++||||||||+||+..+..+.++|+++.++|+|||+||||++++..+ ||++++|
T Consensus 159 ~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 159 RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp SBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred CCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 9997 5999999999999999999999999999999999999999999999977799999999999999886 9999999
Q ss_pred eC
Q 040300 290 YG 291 (605)
Q Consensus 290 ~g 291 (605)
+.
T Consensus 239 ~~ 240 (267)
T 2zu0_C 239 YQ 240 (267)
T ss_dssp ET
T ss_pred EC
Confidence 64
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-36 Score=308.04 Aligned_cols=184 Identities=23% Similarity=0.360 Sum_probs=146.7
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHh
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +. ..++|+||+... +..||++++.
T Consensus 52 ~vl~~isl~i~~G-----e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~---~~-g~i~~v~Q~~~l-~~~tv~enl~- 120 (290)
T 2bbs_A 52 PVLKDINFKIERG-----QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HS-GRISFCSQNSWI-MPGTIKENII- 120 (290)
T ss_dssp CSEEEEEEEECTT-----CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEE---CC-SCEEEECSSCCC-CSSBHHHHHH-
T ss_pred eEEEeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---EC-CEEEEEeCCCcc-CcccHHHHhh-
Confidence 4689999999888 68999999999999999999999999999984 22 259999998754 4469999986
Q ss_pred hhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040300 437 KIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIV 505 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~ 505 (605)
... . ......++++.+++.+.++ +++.+|||||||||+|||||+++|++|||||||++||+.++..
T Consensus 121 ~~~--~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 197 (290)
T 2bbs_A 121 GVS--Y-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 197 (290)
T ss_dssp TTC--C-CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHH
T ss_pred Ccc--c-chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHH
Confidence 221 1 2223345566666654333 3458999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 506 AAKVI-KRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 506 l~~~l-~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+++.+ +++ . .++|||+||||++++. .|||+++|+++.. ...+++++++.
T Consensus 198 i~~~ll~~~-~-~~~tviivtHd~~~~~-~~d~i~~l~~G~i--~~~g~~~~l~~ 247 (290)
T 2bbs_A 198 IFESCVCKL-M-ANKTRILVTSKMEHLK-KADKILILHEGSS--YFYGTFSELQN 247 (290)
T ss_dssp HHHHCCCCC-T-TTSEEEEECCCHHHHH-HSSEEEEEETTEE--EEEECHHHHHH
T ss_pred HHHHHHHHh-h-CCCEEEEEecCHHHHH-cCCEEEEEECCeE--EEeCCHHHHhh
Confidence 99864 454 2 3899999999999986 5999999986543 35578888865
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=312.94 Aligned_cols=198 Identities=25% Similarity=0.310 Sum_probs=143.4
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
..|++.| ++++|+.....|++++ .+++||++||+||||||||||+++|+|+++|+.|+|.
T Consensus 52 ~~i~~~~--------vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~----------- 112 (306)
T 3nh6_A 52 GRIEFEN--------VHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR----------- 112 (306)
T ss_dssp CCEEEEE--------EEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEE-----------
T ss_pred CeEEEEE--------EEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEE-----------
Confidence 3577766 4567754444566666 4689999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCch-----------hhcc
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQ-----------VIDR 212 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~-----------~~dr 212 (605)
+.|.++..+....+.. ..++.+| .|..+.+++.+.+. .......+.++++.+++.+ ..++
T Consensus 113 i~G~~i~~~~~~~~r~--~i~~v~Q----~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 113 IDGQDISQVTQASLRS--HIGVVPQ----DTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTEETTSBCHHHHHH--TEEEECS----SCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred ECCEEcccCCHHHHhc--ceEEEec----CCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 3344433322111111 1223333 33333344443321 1111233444555555543 4455
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
...+||||||||++|||||+++|+|||||||||+||+.++..+.+.|+++.+ ++|||+||||++.+.. ||+|++|+.+
T Consensus 187 ~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 187 RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHHHT-CSEEEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHHHc-CCEEEEEECC
Confidence 6689999999999999999999999999999999999999999999999875 7999999999999987 9999999743
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=304.09 Aligned_cols=184 Identities=22% Similarity=0.343 Sum_probs=137.8
Q ss_pred ceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+.. ...|++++ .+. |++++|+||||||||||+|+|+|++ |+.|++.. .|.++... .
T Consensus 7 l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~-----------~g~~~~~~-~- 71 (263)
T 2pjz_A 7 VGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFI-----------NGMEVRKI-R- 71 (263)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEE-----------TTEEGGGC-S-
T ss_pred EEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEE-----------CCEECcch-H-
Confidence 45566541 23466665 357 9999999999999999999999999 99999852 22211100 0
Q ss_pred HHHHHHHHh-hcccccccchhhhhchhhhhcCc-----hHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHH
Q 040300 159 ILEDNLKAI-IKPQYVDHIPKAVQGNVGQVLDQ-----KDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 159 ~~~~~~~~~-~~~q~~~~~~~~~~~~v~~~l~~-----~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
...... +.+|... . ..++.+.+.. ...++++.++++.++|. +.+++++.+||||||||++||+||
T Consensus 72 ---~~~~i~~~v~Q~~~----l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL 143 (263)
T 2pjz_A 72 ---NYIRYSTNLPEAYE----I-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL 143 (263)
T ss_dssp ---CCTTEEECCGGGSC----T-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH
T ss_pred ---HhhheEEEeCCCCc----c-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 000011 2222211 1 1122221110 11245688999999999 999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcC-EEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSD-FICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D-~i~vl~g~ 292 (605)
+.+|++|||||||++||+..+..+.++|+++.+ |||+||||++++..+|| ++++|..+
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 999999999999999999999999999999864 99999999999999999 99999743
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=307.25 Aligned_cols=190 Identities=21% Similarity=0.283 Sum_probs=134.4
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.+...|++++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|.. .|.++........
T Consensus 7 l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~~- 74 (243)
T 1mv5_A 7 VDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI-----------DGQPIDNISLENW- 74 (243)
T ss_dssp EEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE-----------TTEESTTTSCSCC-
T ss_pred EEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-----------CCEEhhhCCHHHH-
Confidence 4455622222355554 35799999999999999999999999999999999852 2221111000000
Q ss_pred HHHHHhhcccccccchhhhhchhhhhcC----chHHHHHHHHHHhhcCCchhhc-----------ccCCCCChHHHHHHH
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKADLCTDLDLNQVID-----------RNVGDLSGGELQRFA 226 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l~----~~~~~~~~~~~l~~l~L~~~~d-----------r~v~~LSGGe~QRva 226 (605)
.-...+.+|. +..+..++.+.+. .....+++.++++.+++.++++ +++.+|||||||||+
T Consensus 75 -~~~i~~v~q~----~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~ 149 (243)
T 1mv5_A 75 -RSQIGFVSQD----SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149 (243)
T ss_dssp -TTTCCEECCS----SCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred -HhhEEEEcCC----CccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHH
Confidence 0001222332 2111123333221 1112345677888888876654 456899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 227 IA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||||+++|++|||||||++||+..+..+.+.|+++. +|+|||+||||++++. .||+|++|..
T Consensus 150 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~ 212 (243)
T 1mv5_A 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEK 212 (243)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEET
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEEC
Confidence 9999999999999999999999999999999999997 5999999999999886 5999999964
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=329.08 Aligned_cols=203 Identities=21% Similarity=0.343 Sum_probs=165.9
Q ss_pred hhheeeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cce
Q 040300 345 ETYARYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFN 414 (605)
Q Consensus 345 ~~~~~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~ 414 (605)
++. +++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +..
T Consensus 345 ~~v-~~~y~~~~~~~l~~v~~~i~~G-----~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 345 RNV-TFTYPGREVPALRNINLKIPAG-----KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp EEE-EECSSSSSCCSEEEEEEEECTT-----CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred EEE-EEEcCCCCCccccceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 344 8889742 45789999999988 68999999999999999999999999999985 22222 125
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhcc-----------CcCcCChhHHHHHHHHHHHc
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ-----------EVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~LSGGe~QRvaiA~aL~ 483 (605)
++|+||++.. +..|+++++...... ....+.+.++++.+++.++.++ ...+|||||||||+|||||+
T Consensus 419 i~~v~Q~~~l-~~~tv~eni~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 419 VALVSQNVHL-FNDTVANNIAYARTE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp EEEECSSCCC-CSSBHHHHHHTTTTS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred CeEEccCCcC-CCCCHHHHHhccCCC-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999754 567999998653211 1234567778888888765544 45899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|++|||||||++||+.++..+.+.|+++. + |+|+|+||||++.+. .||||++|+++.. ...|+++++...
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i--~~~g~~~~l~~~ 568 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLSTIE-QADEIVVVEDGII--VERGTHSELLAQ 568 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGGTT-TCSEEEEEETTEE--EEEECHHHHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHHHH-hCCEEEEEECCEE--EEecCHHHHHHc
Confidence 9999999999999999999999999999984 3 899999999999886 6999999997554 356888888764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=331.09 Aligned_cols=209 Identities=31% Similarity=0.582 Sum_probs=155.0
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+..+| ...+ .+++||++||+|+||||||||+|+|+|+++|+.|++..... .+.+........ +...+
T Consensus 274 ~l~~~~~~~~l--~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---~i~~~~q~~~~~-~~~tv 347 (538)
T 3ozx_A 274 KIIKKLGDFQL--VVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ---ILSYKPQRIFPN-YDGTV 347 (538)
T ss_dssp CEEEEETTEEE--EECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC---CEEEECSSCCCC-CSSBH
T ss_pred ceEEEECCEEE--EeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe---eeEeechhcccc-cCCCH
Confidence 34556765333 2222 24699999999999999999999999999999999853210 001110000000 00000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
.+++... .. .... .....++++++.++|.+.+++++.+|||||||||+|||||+++|++|||
T Consensus 348 ~~~l~~~-~~---------------~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlL 409 (538)
T 3ozx_A 348 QQYLENA-SK---------------DALS--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVL 409 (538)
T ss_dssp HHHHHHH-CS---------------STTC--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHh-hh---------------hccc--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 0111000 00 0000 1123567889999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhc
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLA 314 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~ 314 (605)
||||++||+.++..++++|+++.+ .|.|||+||||++++..+||+|++|+++++..+....|...+.+.+.|+.
T Consensus 410 DEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (538)
T 3ozx_A 410 DQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLR 484 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHH
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHh
Confidence 999999999999999999999975 58999999999999999999999999988888877778777777776654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=329.04 Aligned_cols=203 Identities=18% Similarity=0.305 Sum_probs=165.5
Q ss_pred hhheeeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cce
Q 040300 345 ETYARYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFN 414 (605)
Q Consensus 345 ~~~~~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~ 414 (605)
++. +++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +..
T Consensus 345 ~~v-~~~y~~~~~~~l~~i~l~i~~G-----~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 345 KDV-TFTYQGKEKPALSHVSFSIPQG-----KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred EEE-EEEcCCCCccccccceEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 344 8889742 44789999999988 68999999999999999999999999999985 22221 235
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccC-----------cCcCChhHHHHHHHHHHHc
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQE-----------VVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-----------~~~LSGGe~QRvaiA~aL~ 483 (605)
++|+||++.. |..|+++++...... ....+.+.++++.+++.++.++. ..+|||||||||+|||||+
T Consensus 419 i~~v~Q~~~l-~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 419 FALVSQNVHL-FNDTIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred eEEEcCCCcc-ccccHHHHHhccCCC-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 9999999754 567999998643211 12345567788888887665544 4799999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|++|||||||++||+.++..+.+.|+++. + |+|+|+||||++.+. .||||++|+++.. ...|+++++...
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i--~~~g~~~~l~~~ 568 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIE-QADEILVVDEGEI--IERGRHADLLAQ 568 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEE--EEECCHHHHHhC
Confidence 9999999999999999999999999999974 3 899999999999987 6999999996544 356888888764
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=330.36 Aligned_cols=199 Identities=18% Similarity=0.270 Sum_probs=164.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +..++|+|
T Consensus 361 ~~~y~~~~~~l~~isl~i~~G-----~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~ 435 (598)
T 3qf4_B 361 WFSYDKKKPVLKDITFHIKPG-----QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVL 435 (598)
T ss_dssp ECCSSSSSCSCCSEEEECCTT-----CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEECCCCCccccceEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEe
Confidence 888875445789999999988 68999999999999999999999999999985 22222 13599999
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCc-----------CcCChhHHHHHHHHHHHccCCCE
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEV-----------VNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----------~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
|++. .|..|+++++...... ...+.+.++++..++.+..++.+ .+|||||||||+|||||+++|++
T Consensus 436 Q~~~-lf~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i 512 (598)
T 3qf4_B 436 QDTI-LFSTTVKENLKYGNPG--ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512 (598)
T ss_dssp TTCC-CCSSBHHHHHHSSSTT--CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCCc-cccccHHHHHhcCCCC--CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9975 4678999998643211 12234567777777776665554 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||||||++||++++..+.+.|+++. .|+|+|+||||++.+.. ||||++|+++.. ...|+++++...
T Consensus 513 lllDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i--~~~g~~~~l~~~ 579 (598)
T 3qf4_B 513 LILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTIKN-ADLIIVLRDGEI--VEMGKHDELIQK 579 (598)
T ss_dssp EEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTHHHH-CSEEEEECSSSE--EECSCHHHHHHT
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 99999999999999999999999984 48999999999999876 999999986554 467999998765
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=300.92 Aligned_cols=197 Identities=25% Similarity=0.299 Sum_probs=139.1
Q ss_pred ceEEEecCCcccCCCceEEeCCC--ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPN--TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~--~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
.+|++.||.+ +|+.. ...|++++ .+.+||+++|+||||||||||+|+|+|+++| .|++.
T Consensus 16 ~~l~i~~l~~--------~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~--------- 77 (260)
T 2ghi_A 16 VNIEFSDVNF--------SYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIK--------- 77 (260)
T ss_dssp CCEEEEEEEE--------CCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEE---------
T ss_pred CeEEEEEEEE--------EeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEE---------
Confidence 3588877655 45431 12344444 3479999999999999999999999999987 79985
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhh-----------
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVI----------- 210 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~----------- 210 (605)
+.|.++..+...... -...+.+|.. ..+..++.+.+. .....+++.++++.+++.+..
T Consensus 78 --i~g~~i~~~~~~~~~--~~i~~v~Q~~----~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~ 149 (260)
T 2ghi_A 78 --IGGKNVNKYNRNSIR--SIIGIVPQDT----ILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIV 149 (260)
T ss_dssp --ETTEEGGGBCHHHHH--TTEEEECSSC----CCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEE
T ss_pred --ECCEEhhhcCHHHHh--ccEEEEcCCC----cccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccc
Confidence 333333221110000 1122333332 222223333221 011133456677777775432
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
++++.+|||||||||+|||||+++|++|||||||++||+..+..+.+.|+++.+ ++|||+||||++++. .||+|++|+
T Consensus 150 ~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~-~~d~i~~l~ 227 (260)
T 2ghi_A 150 GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTIS-SAESIILLN 227 (260)
T ss_dssp SSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGST-TCSEEEEEE
T ss_pred cCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHH-hCCEEEEEE
Confidence 467889999999999999999999999999999999999999999999999965 899999999999986 499999997
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
.+
T Consensus 228 ~G 229 (260)
T 2ghi_A 228 KG 229 (260)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-35 Score=327.57 Aligned_cols=199 Identities=20% Similarity=0.296 Sum_probs=162.1
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +..++|+
T Consensus 346 ~~~y~~~~~~~l~~isl~i~~G-----~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v 420 (578)
T 4a82_A 346 SFQYNDNEAPILKDINLSIEKG-----ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 420 (578)
T ss_dssp EECSCSSSCCSEEEEEEEECTT-----CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEE
T ss_pred EEEcCCCCCcceeeeEEEECCC-----CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEE
Confidence 8888753 34789999999988 68999999999999999999999999999985 22222 1359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||++.. |..|+++++..... ....+.+.++++..++.+..+ +...+|||||||||+|||||+++|+
T Consensus 421 ~Q~~~l-~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 421 QQDNIL-FSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp CSSCCC-CSSBHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred eCCCcc-CcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 999754 56799999864321 223445566677666655443 3446899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||++||++++..+.+.|+++. .++|+|+||||++.+.. ||||++|+++.. ...|+++++.+.
T Consensus 498 illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i--~~~g~~~el~~~ 565 (578)
T 4a82_A 498 ILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTITH-ADKIVVIENGHI--VETGTHRELIAK 565 (578)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGTTT-CSEEEEEETTEE--EEEECHHHHHHT
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999999999873 37899999999999865 999999997554 466899998765
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=330.85 Aligned_cols=187 Identities=39% Similarity=0.581 Sum_probs=151.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee-----------cccc-------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS-----------DVEI------- 410 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~-----------~~~~------- 410 (605)
+++|++....+.+++ ++. +||+++|+||||||||||+|+|+|+++|++|++. +...
T Consensus 98 s~~yg~~~~~l~~vs-~i~-----~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 98 VHRYGVNAFVLYRLP-IVK-----DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp EEECSTTCCEEECCC-CCC-----TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred EEEECCCCeeeCCCC-CCC-----CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 777865322455555 444 4589999999999999999999999999999841 1110
Q ss_pred --CcceeEeecCcCCCC---CcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 411 --PEFNVSYKPQKISPK---FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 411 --~~~~i~y~~q~~~~~---~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
....+++++|+.... +..|+.+++... . ....+.++++.++|.+.+++++.+|||||||||+|||||+++
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~--~---~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~ 246 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV--D---EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRK 246 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT--C---CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhh--H---HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 123577888874321 234888876431 1 112467899999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcce
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSV 547 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~ 547 (605)
|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||||++|.++++.
T Consensus 247 P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~~~~~~adri~vl~~~~~~ 307 (607)
T 3bk7_A 247 AHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLAVLDYLSDVIHVVYGEPGV 307 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHHhhCCEEEEECCCccc
Confidence 999999999999999999999999999865 5999999999999999999999999987654
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=324.79 Aligned_cols=203 Identities=20% Similarity=0.339 Sum_probs=162.8
Q ss_pred hhheeeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cce
Q 040300 345 ETYARYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFN 414 (605)
Q Consensus 345 ~~~~~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~ 414 (605)
++. +++|++ ....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +..
T Consensus 345 ~~v-~~~y~~~~~~~l~~isl~i~~G-----e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 345 ENV-EFRYFENTDPVLSGVNFSVKPG-----SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp EEE-EECSSSSSCCSEEEEEEEECTT-----CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred EEE-EEEcCCCCCcceeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 344 888864 235789999999988 68999999999999999999999999999985 22221 235
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcC-----------CchhhccCcCcCChhHHHHHHHHHHHc
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLL-----------IEQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~-----------l~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
++|+||++.. |..|+++++..... ........+.++..+ ++...++...+|||||||||+|||||+
T Consensus 419 i~~v~Q~~~l-f~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 419 ISAVPQETVL-FSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp EEEECSSCCC-CSEEHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEECCCCcC-cCccHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 9999999754 56799999854321 122333444444444 444456778899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
++|++|||||||++||++++..+.+.|+++. .|+|+|+||||++.+. .||||++|+++.. ...|+++++.+..
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~i--~~~g~~~el~~~~ 568 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTAL-LADKILVLHEGKV--AGFGTHKELLEHC 568 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHHT-TSSEEEEEETTEE--EEEECHHHHHHHC
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHHH-hCCEEEEEECCEE--EEECCHHHHHhCC
Confidence 9999999999999999999999999999973 4899999999999986 7999999997554 4668999987653
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=291.80 Aligned_cols=183 Identities=23% Similarity=0.368 Sum_probs=125.1
Q ss_pred eEEEecCCcccCCCceEEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+|++.||. ++|+. +...|++++ .+.+||+++|+||||||||||+|+|+|+++|+.|++...
T Consensus 6 ~l~~~~l~--------~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~--------- 68 (229)
T 2pze_A 6 EVVMENVT--------AFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS--------- 68 (229)
T ss_dssp EEEEEEEE--------ECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEEC---------
T ss_pred eEEEEEEE--------EEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEEC---------
Confidence 57777655 45532 222344444 347999999999999999999999999999999998521
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC--chHHHHHHHHHHhhcCCchh-----------hccc
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD--QKDERDMKADLCTDLDLNQV-----------IDRN 213 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~--~~~~~~~~~~~l~~l~L~~~-----------~dr~ 213 (605)
|. ..+.+|.....+ .++.+.+. ......+..++++.+++.+. .+++
T Consensus 69 --g~---------------i~~v~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 127 (229)
T 2pze_A 69 --GR---------------ISFCSQFSWIMP----GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127 (229)
T ss_dssp --SC---------------EEEECSSCCCCS----BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTT
T ss_pred --CE---------------EEEEecCCcccC----CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCC
Confidence 10 011111111111 11111110 00000112233334444332 3445
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV-VRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~-i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+||||||||++|||||+++|++|||||||++||+..+..+.+. ++++. .++|||+||||++++.. ||++++|..
T Consensus 128 ~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~ 204 (229)
T 2pze_A 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKK-ADKILILHE 204 (229)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHH-CSEEEEEET
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHh-CCEEEEEEC
Confidence 689999999999999999999999999999999999999999886 45654 38999999999999874 999999964
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=323.09 Aligned_cols=185 Identities=37% Similarity=0.568 Sum_probs=149.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee-----------cccc-------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS-----------DVEI------- 410 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~-----------~~~~------- 410 (605)
+++|++....+.+++ ++.+| |+++|+||||||||||+|+|+|+++|++|++. +...
T Consensus 28 s~~yg~~~~~l~~vs-~i~~G-----e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~ 101 (538)
T 1yqt_A 28 VHRYGVNAFVLYRLP-VVKEG-----MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKL 101 (538)
T ss_dssp EEECSTTCCEEECCC-CCCTT-----SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHH
T ss_pred EEEECCccccccCcC-cCCCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHH
Confidence 788865322455665 55555 89999999999999999999999999999841 1100
Q ss_pred --CcceeEeecCcCCCCC---cCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 411 --PEFNVSYKPQKISPKF---QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 411 --~~~~i~y~~q~~~~~~---~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
....+++++|...... ..++.+++... . ....+.++++.+++....++++.+|||||||||+||+||+++
T Consensus 102 ~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~--~---~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~ 176 (538)
T 1yqt_A 102 KNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA--D---ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRN 176 (538)
T ss_dssp HTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH--C---SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred HHHhhhhhhhhhhhhhcchhhhccHHHHHhhh--h---HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 1235788888753221 23787766421 1 112467899999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|+||||||||++||+.++..+.++|+++.+ .|+|||+||||++++..+||||++|+++.
T Consensus 177 P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 177 ATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCcc
Confidence 999999999999999999999999999865 59999999999999999999999998654
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=292.97 Aligned_cols=184 Identities=27% Similarity=0.367 Sum_probs=126.6
Q ss_pred eEEEecCCcccCCCceEEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+|++.|| +++|+. +...|.+++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|...
T Consensus 3 ~l~~~~l--------~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--------- 65 (237)
T 2cbz_A 3 SITVRNA--------TFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK--------- 65 (237)
T ss_dssp CEEEEEE--------EEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEEC---------
T ss_pred eEEEEEE--------EEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC---------
Confidence 4666665 456653 123355555 357999999999999999999999999999999998522
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc----C-chHHHHHHHH---HHhhcCCc-----hhhccc
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL----D-QKDERDMKAD---LCTDLDLN-----QVIDRN 213 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l----~-~~~~~~~~~~---~l~~l~L~-----~~~dr~ 213 (605)
|. .++.+|... + ...++.+.+ . ......++.+ +.+.+++. ..++++
T Consensus 66 --g~---------------i~~v~Q~~~-~---~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 124 (237)
T 2cbz_A 66 --GS---------------VAYVPQQAW-I---QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEK 124 (237)
T ss_dssp --SC---------------EEEECSSCC-C---CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTT
T ss_pred --CE---------------EEEEcCCCc-C---CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCC
Confidence 10 011111110 0 001111110 0 0011111111 12223321 235788
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---HhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVR---SLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~---~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|. ++. +|+|||+||||++++. .||++++|.
T Consensus 125 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~-~~d~v~~l~ 202 (237)
T 2cbz_A 125 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLP-QVDVIIVMS 202 (237)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGG-GSSEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHH-hCCEEEEEe
Confidence 99999999999999999999999999999999999999999999885 443 4899999999999986 699999996
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
.+
T Consensus 203 ~G 204 (237)
T 2cbz_A 203 GG 204 (237)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=313.04 Aligned_cols=197 Identities=23% Similarity=0.312 Sum_probs=146.4
Q ss_pred ceEEEecCCcccCCCceEEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
.+|++.||. ++|+. +...|++++ .+++||+++|+||||||||||+|+|+|+++ +.|+|.
T Consensus 18 ~~i~~~~l~--------~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~---------- 78 (390)
T 3gd7_A 18 GQMTVKDLT--------AKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ---------- 78 (390)
T ss_dssp CCEEEEEEE--------EESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEE----------
T ss_pred CeEEEEEEE--------EEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEE----------
Confidence 368888764 46632 223456665 458999999999999999999999999997 889985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC--chHHHHHHHHHHhhcCCchhhcccCCC-------
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD--QKDERDMKADLCTDLDLNQVIDRNVGD------- 216 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~--~~~~~~~~~~~l~~l~L~~~~dr~v~~------- 216 (605)
+.|.++.......... ...+.+|.....+ .++.+.+. ....++++.++++.++|.+++++.+.+
T Consensus 79 -i~G~~i~~~~~~~~rr--~ig~v~Q~~~lf~----~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~ 151 (390)
T 3gd7_A 79 -IDGVSWDSITLEQWRK--AFGVIPQKVFIFS----GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151 (390)
T ss_dssp -ESSCBTTSSCHHHHHH--TEEEESCCCCCCS----EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECT
T ss_pred -ECCEECCcCChHHHhC--CEEEEcCCcccCc----cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhccccccccccc
Confidence 3333332221111111 1233344332222 23443322 112345678899999999999999998
Q ss_pred ----CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 ----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 ----LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||||||+|||||+.+|++||||||||+||+..+..+.+.|+++.+ +.|+|+||||++.+. .||+|++|+.+
T Consensus 152 ~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~-~~tvi~vtHd~e~~~-~aDri~vl~~G 229 (390)
T 3gd7_A 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFA-DCTVILCEARIEAML-ECDQFLVIEEN 229 (390)
T ss_dssp TTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTT-TSCEEEECSSSGGGT-TCSEEEEEETT
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-CCEEEEEEcCHHHHH-hCCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 899999999987665 59999999643
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=316.91 Aligned_cols=191 Identities=35% Similarity=0.547 Sum_probs=145.6
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccc--------cC--------------cceeEeecCcCCCC--
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVE--------IP--------------EFNVSYKPQKISPK-- 425 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~--------~~--------------~~~i~y~~q~~~~~-- 425 (605)
.+.+||++||+||||||||||+|+|+|+++|++|++.... .. .....+.+|.....
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 3566799999999999999999999999999999873100 00 01122333432110
Q ss_pred ----CcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040300 426 ----FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501 (605)
Q Consensus 426 ----~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~ 501 (605)
...++.+++... .......+.++++.+++.+.+++++.+|||||||||+|||||+++|++|||||||++||+.
T Consensus 179 ~~~~~~~~v~~~l~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~ 255 (608)
T 3j16_B 179 AIKGPVQKVGELLKLR---MEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVK 255 (608)
T ss_dssp HCSSSSSHHHHHHHHH---CCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHH
T ss_pred hhcchhhHHHHHHhhh---hhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHH
Confidence 012344443221 1123456889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccccc
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF 564 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~ 564 (605)
++..+.++|+++.+ .|+|||+||||++++.++||||++|.+++........|.+...+.+.+
T Consensus 256 ~~~~l~~~l~~l~~-~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~~~~~~~~ 317 (608)
T 3j16_B 256 QRLNAAQIIRSLLA-PTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIF 317 (608)
T ss_dssp HHHHHHHHHHGGGT-TTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCchhHHHHHHHh
Confidence 99999999999854 589999999999999999999999998776544444454444443333
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=313.90 Aligned_cols=198 Identities=22% Similarity=0.331 Sum_probs=145.4
Q ss_pred ceEEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
..|++.|+ +++|+.. ...|++++ .+++||++||+||||||||||+|+|+|+++|+.|++.
T Consensus 340 ~~i~~~~v--------~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~---------- 401 (582)
T 3b5x_A 340 GEVDVKDV--------TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC---------- 401 (582)
T ss_pred CeEEEEEE--------EEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE----------
Confidence 46777665 5577532 33566666 4689999999999999999999999999999999985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC----chHHHHHHHHHHhhcCCchhhcc---------
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKADLCTDLDLNQVIDR--------- 212 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~----~~~~~~~~~~~l~~l~L~~~~dr--------- 212 (605)
+.|.++..+....+.. ..++.+| .|..+.+++.+.+. ....++++.++++.+++.+..++
T Consensus 402 -~~g~~~~~~~~~~~~~--~i~~v~Q----~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~ 474 (582)
T 3b5x_A 402 -LDGHDVRDYKLTNLRR--HFALVSQ----NVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474 (582)
T ss_pred -ECCEEhhhCCHHHHhc--CeEEEcC----CCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchh
Confidence 3343332221111111 1122233 33333334444321 11224556777888877665554
Q ss_pred --cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 213 --NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 213 --~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
...+||||||||++|||||+++|++||||||||+||+.++..+.+.|+++.+ |+|+|+||||++.+. .||+|++|+
T Consensus 475 ~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~ 552 (582)
T 3b5x_A 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTIE-QADEILVVD 552 (582)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-hCCEEEEEE
Confidence 4589999999999999999999999999999999999999999999999865 999999999999987 699999997
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
++
T Consensus 553 ~G 554 (582)
T 3b5x_A 553 EG 554 (582)
T ss_pred CC
Confidence 43
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-33 Score=313.79 Aligned_cols=198 Identities=23% Similarity=0.321 Sum_probs=145.0
Q ss_pred ceEEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
..|++.|+. ++|+.+ ...|++++ .+++||++||+||||||||||+|+|+|+++|+.|++.
T Consensus 340 ~~i~~~~v~--------~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~---------- 401 (582)
T 3b60_A 340 GDLEFRNVT--------FTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL---------- 401 (582)
T ss_dssp CCEEEEEEE--------ECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE----------
T ss_pred CcEEEEEEE--------EEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE----------
Confidence 467777754 456532 23455555 3579999999999999999999999999999999985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC----chHHHHHHHHHHhhcCCchhhcc---------
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKADLCTDLDLNQVIDR--------- 212 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~----~~~~~~~~~~~l~~l~L~~~~dr--------- 212 (605)
+.|.++..+....... ..++.+|. |..+.+++.+.+. ....++++.++++.+++.+..++
T Consensus 402 -~~g~~~~~~~~~~~~~--~i~~v~Q~----~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~ 474 (582)
T 3b60_A 402 -MDGHDLREYTLASLRN--QVALVSQN----VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTII 474 (582)
T ss_dssp -ETTEETTTBCHHHHHH--TEEEECSS----CCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBC
T ss_pred -ECCEEccccCHHHHHh--hCeEEccC----CcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccc
Confidence 3344333221111111 12333443 3223334443321 11124557778888887665544
Q ss_pred --cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 213 --NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 213 --~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
...+||||||||++|||||+++|++||||||||+||+.++..+.+.|+++.+ |+|+|+||||++.+. .||+|++|+
T Consensus 475 ~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~ 552 (582)
T 3b60_A 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIE-QADEIVVVE 552 (582)
T ss_dssp CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-TCSEEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHH-hCCEEEEEE
Confidence 4589999999999999999999999999999999999999999999999876 999999999999886 699999997
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
++
T Consensus 553 ~G 554 (582)
T 3b60_A 553 DG 554 (582)
T ss_dssp TT
T ss_pred CC
Confidence 53
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-32 Score=282.94 Aligned_cols=183 Identities=22% Similarity=0.318 Sum_probs=115.7
Q ss_pred cceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 67 FEAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 67 ~~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
...|++.||... +. ..|++++ .+.+|++++|+|+||||||||+|+|+|+++|+.|++..... +
T Consensus 38 ~~~l~~~~l~~~--------~~---~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~----i- 101 (290)
T 2bbs_A 38 DDSLSFSNFSLL--------GT---PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----I- 101 (290)
T ss_dssp --------------------CC---CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSC----E-
T ss_pred CceEEEEEEEEc--------Cc---eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE----E-
Confidence 346777777642 11 1233333 23799999999999999999999999999999999853210 0
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcCc-hHHHHHHHHHHhhcCCchh-----------hccc
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQ-KDERDMKADLCTDLDLNQV-----------IDRN 213 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~-~~~~~~~~~~l~~l~L~~~-----------~dr~ 213 (605)
++.+|.....+ .++.+.+.. .....+..++++.+++.+. +++.
T Consensus 102 ---------------------~~v~Q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 156 (290)
T 2bbs_A 102 ---------------------SFCSQNSWIMP----GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156 (290)
T ss_dssp ---------------------EEECSSCCCCS----SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC---
T ss_pred ---------------------EEEeCCCccCc----ccHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCc
Confidence 11111111111 111111100 0001122334444455433 3345
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV-RSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i-~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+||||||||++|||||+.+|++|||||||++||+..+..+++.+ +++. .|+|||+||||++++. .||++++|..+
T Consensus 157 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~-~~d~i~~l~~G 234 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKILILHEG 234 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HSSEEEEEETT
T ss_pred cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHH-cCCEEEEEECC
Confidence 6899999999999999999999999999999999999999998864 5554 4899999999999986 59999999743
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-33 Score=314.17 Aligned_cols=197 Identities=22% Similarity=0.281 Sum_probs=145.7
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
..|++.|+.. +|+.+...|++++ .+++||++||+||||||||||+|+|+|+++|+.|++.
T Consensus 353 ~~i~~~~v~~--------~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~----------- 413 (598)
T 3qf4_B 353 GEIEFKNVWF--------SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL----------- 413 (598)
T ss_dssp CCEEEEEEEC--------CSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEE-----------
T ss_pred CeEEEEEEEE--------ECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEE-----------
Confidence 3677777654 5654333456665 4689999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhhcccC---------
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVIDRNV--------- 214 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~dr~v--------- 214 (605)
+.|.++..+....+.. ..++.+| .|..+.+++.+.+. ....++.+.++++..++.+..++.+
T Consensus 414 ~~g~~i~~~~~~~~r~--~i~~v~Q----~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 414 VDGIDIRKIKRSSLRS--SIGIVLQ----DTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp ETTEEGGGSCHHHHHH--HEEEECT----TCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred ECCEEhhhCCHHHHHh--ceEEEeC----CCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 3444444332211111 1233344 33333345544331 1112234566777777766555544
Q ss_pred --CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 215 --GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 215 --~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+||||||||++|||||+++|++||||||||+||+.++..+.+.|+++.+ |+|+|+||||++.+.. ||+|++|++
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~ 564 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHRLNTIKN-ADLIIVLRD 564 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT-TSEEEEESCCTTHHHH-CSEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHc-CCEEEEEEC
Confidence 79999999999999999999999999999999999999999999999864 8999999999999876 999999964
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-32 Score=310.49 Aligned_cols=197 Identities=21% Similarity=0.316 Sum_probs=143.0
Q ss_pred eEEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.|++.|+ +++|+.. ...|++++ .+++||++||+||||||||||+|+|+|+++|+.|++.
T Consensus 339 ~i~~~~v--------~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~----------- 399 (578)
T 4a82_A 339 RIDIDHV--------SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL----------- 399 (578)
T ss_dssp CEEEEEE--------EECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE-----------
T ss_pred eEEEEEE--------EEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE-----------
Confidence 5777765 4566542 23456665 4579999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhh-----------cc
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVI-----------DR 212 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~-----------dr 212 (605)
+.|.++..+....... ..++.+| .|..+.+++.+.+. .....+++.++++..++.+.. ++
T Consensus 400 ~~g~~~~~~~~~~~r~--~i~~v~Q----~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 400 IDGHNIKDFLTGSLRN--QIGLVQQ----DNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp ETTEEGGGSCHHHHHH--TEEEECS----SCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred ECCEEhhhCCHHHHhh--heEEEeC----CCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 3444444332211111 1233334 33333445554331 111234455666666655443 34
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
...+||||||||++|||||+++|++||||||||+||+.++..+.+.|+++.+ ++|+|+||||++.+.. ||+|++|+++
T Consensus 474 ~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G 551 (578)
T 4a82_A 474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTITH-ADKIVVIENG 551 (578)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGTTT-CSEEEEEETT
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHc-CCEEEEEECC
Confidence 4569999999999999999999999999999999999999999999999865 7999999999999865 9999999753
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=311.62 Aligned_cols=191 Identities=20% Similarity=0.285 Sum_probs=154.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeecccc-CcceeEeecCcC-CCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI-PEFNVSYKPQKI-SPKF 426 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~-~~~~i~y~~q~~-~~~~ 426 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+|+|+| |.+.+... ...+++|++|+. ....
T Consensus 442 s~~yg~~-~iL~~vsl~I~~G-----e~v~LiGpNGsGKSTLLk~Lag------G~i~g~~~~~~~~~~~v~q~~~~~~~ 509 (986)
T 2iw3_A 442 SLAYGAK-ILLNKTQLRLKRA-----RRYGICGPNGCGKSTLMRAIAN------GQVDGFPTQEECRTVYVEHDIDGTHS 509 (986)
T ss_dssp EEEETTE-EEEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHHH------TCSTTCCCTTTSCEEETTCCCCCCCT
T ss_pred EEEECCE-EeEecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhC------CCcCCCccccceeEEEEccccccccc
Confidence 7788753 4689999999888 6899999999999999999995 22211111 123578999875 3345
Q ss_pred cCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040300 427 QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIV 505 (605)
Q Consensus 427 ~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~ 505 (605)
..|+.+++...... . ...+.++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||+|||+.++..
T Consensus 510 ~ltv~e~l~~~~~~--~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~ 586 (986)
T 2iw3_A 510 DTSVLDFVFESGVG--T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAW 586 (986)
T ss_dssp TSBHHHHHHTTCSS--C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHH
T ss_pred CCcHHHHHHHhhcC--H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHH
Confidence 67999987541111 1 55678899999994 78899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 506 AAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 506 l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+.++|++ .|.|+|+||||++++..+|||+++|+++... ...+++.++..
T Consensus 587 l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~G~iv-~~~G~~~e~~~ 635 (986)
T 2iw3_A 587 LVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKLR-KYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEETTEEE-EEESCHHHHHH
T ss_pred HHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCeee-cCCCCHHHHHh
Confidence 9999987 3899999999999999999999999965432 24577777654
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-32 Score=307.52 Aligned_cols=198 Identities=19% Similarity=0.309 Sum_probs=142.8
Q ss_pred ceEEEecCCcccCCCceEEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
..|++.|+ +++|+. ....|++++ .+++||++||+||||||||||+++|+|+++|+.|++.
T Consensus 340 ~~i~~~~v--------~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~---------- 401 (587)
T 3qf4_A 340 GSVSFENV--------EFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE---------- 401 (587)
T ss_dssp CCEEEEEE--------EECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE----------
T ss_pred CcEEEEEE--------EEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE----------
Confidence 36777765 456643 223456555 4579999999999999999999999999999999985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhc-----------CCchhhc
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDL-----------DLNQVID 211 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l-----------~L~~~~d 211 (605)
+.|.++..+....+.. ..++.+| .|..+.+++.+.+. .....+++.+.++.. |++...+
T Consensus 402 -i~g~~i~~~~~~~~r~--~i~~v~Q----~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 402 -VDELDVRTVKLKDLRG--HISAVPQ----ETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp -ESSSBGGGBCHHHHHH--HEEEECS----SCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred -ECCEEcccCCHHHHHh--heEEECC----CCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhc
Confidence 3444443332211111 1233344 33334445554332 111112233333333 4455567
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+...+||||||||++|||||+++|++||||||||+||+.++..+.+.|+++.+ |+|+|+||||++.+. .||+|++|++
T Consensus 475 ~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~-~~d~i~vl~~ 552 (587)
T 3qf4_A 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK-GCTTFIITQKIPTAL-LADKILVLHE 552 (587)
T ss_dssp SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST-TCEEEEEESCHHHHT-TSSEEEEEET
T ss_pred CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC-CCEEEEEecChHHHH-hCCEEEEEEC
Confidence 78899999999999999999999999999999999999999999999999854 899999999999986 7999999975
Q ss_pred c
Q 040300 292 K 292 (605)
Q Consensus 292 ~ 292 (605)
+
T Consensus 553 G 553 (587)
T 3qf4_A 553 G 553 (587)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=321.59 Aligned_cols=199 Identities=23% Similarity=0.352 Sum_probs=159.0
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +..++|
T Consensus 394 ~~~y~~~~~~~vL~~isl~i~~G-----~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 468 (1284)
T 3g5u_A 394 HFSYPSRKEVQILKGLNLKVKSG-----QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV 468 (1284)
T ss_dssp EECCSSTTSCCSEEEEEEEECTT-----CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEcCCCCCCcceecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEE
Confidence 8889753 34799999999998 68999999999999999999999999999985 22221 125999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-----------hhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-----------LMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+||++.. |..|+++++...... .....+.+.++..++.+ .......+|||||||||+|||||+++|
T Consensus 469 v~Q~~~l-~~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 469 VSQEPVL-FATTIAENIRYGRED--VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp ECSSCCC-CSSCHHHHHHHHCSS--CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred EcCCCcc-CCccHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence 9999754 667999998643211 22334444444444432 334556789999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||||+||+++...+.+.|+++. .|+|+|+|||++..+.. ||||+||+++.. ...|+++++...
T Consensus 546 ~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~vl~~G~i--~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 546 KILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIAGFDGGVI--VEQGNHDELMRE 614 (1284)
T ss_dssp SEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEEECSSSCC--CCEECHHHHHHT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 9999999999999999999999998863 48999999999999976 999999996654 356888888764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=304.74 Aligned_cols=195 Identities=23% Similarity=0.287 Sum_probs=132.7
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHH---------------------HHHHcCCCCCeeeeec---------
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFI---------------------RMLAGLLKPDSVEDSD--------- 407 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLl---------------------k~L~Gl~~p~~G~i~~--------- 407 (605)
.+++++|++.+| |+++|+||||||||||+ +++.|+.+|+.|.+.+
T Consensus 33 ~L~~vsl~i~~G-----e~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 33 NLKNIDVEIPRG-----KLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp TCCSEEEEEETT-----SEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS
T ss_pred ceeccEEEECCC-----CEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC
Confidence 588999999998 68999999999999998 9999999998655431
Q ss_pred cc---cCcceeEeecCcCCC-------------------CCcCcHHHHHHhh--hccCCCC----H------HHHHHHHh
Q 040300 408 VE---IPEFNVSYKPQKISP-------------------KFQSTVRHLLHQK--IRDSYTH----P------QFVSDVMK 453 (605)
Q Consensus 408 ~~---~~~~~i~y~~q~~~~-------------------~~~~tv~~~~~~~--~~~~~~~----~------~~~~~~l~ 453 (605)
.. .+...++|++|.... ...+||.+++... ....... . ....++++
T Consensus 108 ~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 108 KTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp CC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred chhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 00 112235565553211 1234566654321 0000000 0 01123588
Q ss_pred hcCCchh-hccCcCcCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q 040300 454 PLLIEQL-MDQEVVNLSGGELQRVALCLCLGKPAD--IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIM 530 (605)
Q Consensus 454 ~l~l~~~-~~~~~~~LSGGe~QRvaiA~aL~~~p~--lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~ 530 (605)
.+||.+. +++++.+|||||||||+|||||+++|+ ||||||||+|||+.++..++++|+++.+ .|.|||+||||+++
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDT 266 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCHHH
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence 8899865 799999999999999999999999998 9999999999999999999999999854 59999999999998
Q ss_pred HHhhcCEEEEE------eCCcceeeecCChhhhhccc
Q 040300 531 ATYLADRVIVY------EGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 531 ~~~~adrviv~------~g~~~~~~~~~~p~~~~~~~ 561 (605)
+. .||||++| +++. ....++|+++.+..
T Consensus 267 ~~-~~d~ii~l~~g~~~~~G~--i~~~g~~~~~~~~~ 300 (670)
T 3ux8_A 267 ML-AADYLIDIGPGAGIHGGE--VVAAGTPEEVMNDP 300 (670)
T ss_dssp HH-HCSEEEEECSSSGGGCCS--EEEEECHHHHHTCT
T ss_pred Hh-hCCEEEEecccccccCCE--EEEecCHHHHhcCc
Confidence 76 59999999 4332 34668888887653
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=317.94 Aligned_cols=202 Identities=22% Similarity=0.328 Sum_probs=164.8
Q ss_pred hhheeeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cc
Q 040300 345 ETYARYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EF 413 (605)
Q Consensus 345 ~~~~~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~ 413 (605)
+++ +|+|++. ...+++++|++.+| |.++|+||+|||||||+++|.|+++|++|++. +.++. +.
T Consensus 419 ~nv-sF~Y~~~~~~~vL~~isl~i~~G-----~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 419 ENV-HFTYPSRPDVPILRGMNLRVNAG-----QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp EEE-EECCSSSTTSCSEEEEEEEECTT-----CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred EEe-eeeCCCCCCCceeeceEEeecCC-----cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 344 8999753 35799999999988 68999999999999999999999999999986 23222 13
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHH
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL 482 (605)
.|+|++|++. .|..|+++|+..... ..+.+.+.++++..+++++.+ ..-.+||||||||++|||||
T Consensus 493 ~i~~v~Q~~~-Lf~~TI~eNI~~g~~--~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl 569 (1321)
T 4f4c_A 493 NVAVVSQEPA-LFNCTIEENISLGKE--GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL 569 (1321)
T ss_dssp HEEEECSSCC-CCSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH
T ss_pred cccccCCcce-eeCCchhHHHhhhcc--cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH
Confidence 5999999975 578899999865322 234456667777776654432 34468999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.++|+|||||||||+||+++...+.+.|+++. +|+|+|+|||++..+. .||+|+||+++.. ...|+.+++...
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls~i~-~aD~Iivl~~G~i--ve~Gth~eL~~~ 642 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLSTIR-NADLIISCKNGQV--VEVGDHRALMAQ 642 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTTTTT-TCSEEEEEETTEE--EEEECHHHHHTT
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHHHHH-hCCEEEEeeCCee--eccCCHHHHHHh
Confidence 99999999999999999999999999999975 3899999999999886 5999999997654 456888888654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-29 Score=270.11 Aligned_cols=183 Identities=14% Similarity=0.079 Sum_probs=136.9
Q ss_pred eeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCee-e-eeccccCcceeEeecCcCCC---CCcCcHHHHH
Q 040300 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSV-E-DSDVEIPEFNVSYKPQKISP---KFQSTVRHLL 434 (605)
Q Consensus 360 ~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G-~-i~~~~~~~~~i~y~~q~~~~---~~~~tv~~~~ 434 (605)
++++|++..| |+++|+||||||||||+|+|+|+.+|++| + +.........++|+||.... ....|+.+++
T Consensus 129 ~~vsl~i~~G-----e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni 203 (460)
T 2npi_A 129 EKIRMSNFEG-----PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT 203 (460)
T ss_dssp HHHHHHSSSC-----CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT
T ss_pred hcCceEeCCC-----CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh
Confidence 3566666655 79999999999999999999999999999 7 64111224568999998632 2234666544
Q ss_pred Hhhhc--cCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHH--HccCCCE----EEEec-CCCCCCHHHHHH
Q 040300 435 HQKIR--DSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC--LGKPADI----YLIDE-PSAYLDSEQRIV 505 (605)
Q Consensus 435 ~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~a--L~~~p~l----llLDE-Pt~~LD~~~~~~ 505 (605)
.... ........+.++++.+|+.+..+ +.+|||||+|||+|||| |+.+|++ ||||| ||++||+. +..
T Consensus 204 -~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~ 279 (460)
T 2npi_A 204 -WGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAE 279 (460)
T ss_dssp -CSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHH
T ss_pred -cccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHH
Confidence 2111 00011123456788899987776 89999999999999999 9999999 99999 99999998 555
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHH------HHHhhcCE-----EEEEe-CCcceeeecCChhhhh
Q 040300 506 AAKVIKRFILHAKKTAFVVEHDFI------MATYLADR-----VIVYE-GQPSVDCVANAPQSLL 558 (605)
Q Consensus 506 l~~~l~~l~~~~g~tiivvsHD~~------~~~~~adr-----viv~~-g~~~~~~~~~~p~~~~ 558 (605)
+.+++++ .+.|+|+|+||.+ ++..+||| |++|+ ++.. . .++++++.
T Consensus 280 l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~i--v-~g~~~~~~ 337 (460)
T 2npi_A 280 LHHIIEK----LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGV--S-AVDDVYKR 337 (460)
T ss_dssp HHHHHHH----TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTC--C-CCCHHHHH
T ss_pred HHHHHHH----hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcE--E-ECCHHHHh
Confidence 5555544 4789999999977 88899999 99997 5543 2 57776663
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-25 Score=256.24 Aligned_cols=96 Identities=29% Similarity=0.421 Sum_probs=88.2
Q ss_pred HHHHHHHHhhcCCch-hhcccCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEE
Q 040300 194 RDMKADLCTDLDLNQ-VIDRNVGDLSGGELQRFAIAVVAVQNA---EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269 (605)
Q Consensus 194 ~~~~~~~l~~l~L~~-~~dr~v~~LSGGe~QRvaIA~aL~~~p---~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tv 269 (605)
..++.++++.+||.. .+++++.+|||||+|||+||+||+++| ++|||||||++||+..+..+.++|++|.++|.||
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 356778999999986 478999999999999999999999876 7999999999999999999999999998889999
Q ss_pred EEEecCHhHHHhhcCEEEEEe
Q 040300 270 IVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 270 ivvsHdl~~l~~~~D~i~vl~ 290 (605)
|+||||++++.. ||+|++|.
T Consensus 862 IvI~HdL~~i~~-ADrIivLg 881 (916)
T 3pih_A 862 IVIEHNLDVIKN-ADHIIDLG 881 (916)
T ss_dssp EEECCCHHHHTT-CSEEEEEE
T ss_pred EEEeCCHHHHHh-CCEEEEec
Confidence 999999999865 99999993
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-25 Score=259.41 Aligned_cols=95 Identities=25% Similarity=0.369 Sum_probs=89.3
Q ss_pred HHHHHHHhhcCCch-hhcccCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEE
Q 040300 195 DMKADLCTDLDLNQ-VIDRNVGDLSGGELQRFAIAVVAVQN---AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270 (605)
Q Consensus 195 ~~~~~~l~~l~L~~-~~dr~v~~LSGGe~QRvaIA~aL~~~---p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvi 270 (605)
.++.++++.+||.. .+++++.+|||||+|||+||++|+++ |+||||||||++||+..+..++++|++|++.|.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 46788999999987 47999999999999999999999996 799999999999999999999999999988899999
Q ss_pred EEecCHhHHHhhcCEEEEEe
Q 040300 271 VVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 271 vvsHdl~~l~~~~D~i~vl~ 290 (605)
+||||++++ ..||+|++|.
T Consensus 788 visHdl~~i-~~aDrii~L~ 806 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDIG 806 (842)
T ss_dssp EECCCHHHH-TTCSEEEEEC
T ss_pred EEcCCHHHH-HhCCEEEEEC
Confidence 999999999 6899999994
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-25 Score=236.52 Aligned_cols=71 Identities=28% Similarity=0.281 Sum_probs=67.3
Q ss_pred CChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE
Q 040300 468 LSGGELQRVALCLCLGKPA--DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY 541 (605)
Q Consensus 468 LSGGe~QRvaiA~aL~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~ 541 (605)
|||||||||+||++|+.+| ++|||||||+|||+..+..+.+.|+++. .|.|||+||||++++ .+|||+++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~~~-~~~d~i~~l 368 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQIA-ARAHHHYKV 368 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHHH-TTCSEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHH-hhcCeEEEE
Confidence 5999999999999999999 9999999999999999999999999985 489999999999887 479999999
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-25 Score=255.60 Aligned_cols=94 Identities=30% Similarity=0.467 Sum_probs=87.8
Q ss_pred HHHHHHhhcCCch-hhcccCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEE
Q 040300 196 MKADLCTDLDLNQ-VIDRNVGDLSGGELQRFAIAVVAVQNA---EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271 (605)
Q Consensus 196 ~~~~~l~~l~L~~-~~dr~v~~LSGGe~QRvaIA~aL~~~p---~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tviv 271 (605)
++.++++.+||.. .+++++.+|||||+|||+||++|+++| ++|||||||++||+..+..++++|++|.+.|.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4568999999987 789999999999999999999999875 999999999999999999999999999888999999
Q ss_pred EecCHhHHHhhcCEEEEEe
Q 040300 272 VEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 272 vsHdl~~l~~~~D~i~vl~ 290 (605)
||||++++. .||+|++|.
T Consensus 904 isHdl~~i~-~aDrIivL~ 921 (972)
T 2r6f_A 904 IEHNLDVIK-TADYIIDLG 921 (972)
T ss_dssp ECCCHHHHT-TCSEEEEEC
T ss_pred EcCCHHHHH-hCCEEEEEc
Confidence 999999985 799999993
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-25 Score=233.67 Aligned_cols=82 Identities=27% Similarity=0.368 Sum_probs=75.6
Q ss_pred ccCcCcCChhHHHHHHHHHHHc------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q 040300 462 DQEVVNLSGGELQRVALCLCLG------KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLA 535 (605)
Q Consensus 462 ~~~~~~LSGGe~QRvaiA~aL~------~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~a 535 (605)
++++.+|||||+|||+||+||+ .+|++|||||||+|||+.++..++++|+++.. .|.|||+||||+++ ...|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHH-HTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhC
Confidence 5789999999999999999999 79999999999999999999999999999854 59999999999998 5679
Q ss_pred CEEEEEeCCc
Q 040300 536 DRVIVYEGQP 545 (605)
Q Consensus 536 drviv~~g~~ 545 (605)
||+++++++.
T Consensus 352 d~~~~l~~G~ 361 (365)
T 3qf7_A 352 DRKLRITGGV 361 (365)
T ss_dssp SCEEEEETTE
T ss_pred CEEEEEECCE
Confidence 9999998654
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-25 Score=214.28 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=101.4
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCC-CcCcHHHHHHhhhc
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPK-FQSTVRHLLHQKIR 439 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~-~~~tv~~~~~~~~~ 439 (605)
+++|++.+| |+++|+||||||||||++++.+-....++ ..-.++++|+.... +..++.+.+.
T Consensus 1 ~vsl~i~~g-----ei~~l~G~nGsGKSTl~~~~~~~~~~~~~--------d~~~g~~~~~~~~~~~~~~~~~~~~---- 63 (171)
T 4gp7_A 1 SMKLTIPEL-----SLVVLIGSSGSGKSTFAKKHFKPTEVISS--------DFCRGLMSDDENDQTVTGAAFDVLH---- 63 (171)
T ss_dssp CEEEEEESS-----EEEEEECCTTSCHHHHHHHHSCGGGEEEH--------HHHHHHHCSSTTCGGGHHHHHHHHH----
T ss_pred CccccCCCC-----EEEEEECCCCCCHHHHHHHHccCCeEEcc--------HHHHHHhcCcccchhhHHHHHHHHH----
Confidence 467777777 78999999999999999986542211110 01125566653221 1112222111
Q ss_pred cCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH----------------HH
Q 040300 440 DSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE----------------QR 503 (605)
Q Consensus 440 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~----------------~~ 503 (605)
.........+.....+ ....+||||+|||+||+||+.+|++|+|||||++||+. ++
T Consensus 64 -------~~~~~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~ 135 (171)
T 4gp7_A 64 -------YIVSKRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHT 135 (171)
T ss_dssp -------HHHHHHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHH
T ss_pred -------HHHHHHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHH
Confidence 1111222234433333 33556999999999999999999999999999999999 66
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q 040300 504 IVAAKVIKRFILHAKKTAFVVEHDFIMATY 533 (605)
Q Consensus 504 ~~l~~~l~~l~~~~g~tiivvsHD~~~~~~ 533 (605)
..+.+.|+++.++ |.|+|+||||++++..
T Consensus 136 ~~l~~~l~~l~~~-g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 136 QQMKKSIKGLQRE-GFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHSTTHHHH-TCSEEEEECSHHHHHH
T ss_pred HHhhhhhhhHHhc-CCcEEEEeCCHHHhhh
Confidence 8889998888655 9999999999999976
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-26 Score=228.05 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=92.1
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeecccc------CcceeEeecCcCCCCC-cC--cHHHHHHhhhccCC
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI------PEFNVSYKPQKISPKF-QS--TVRHLLHQKIRDSY 442 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~------~~~~i~y~~q~~~~~~-~~--tv~~~~~~~~~~~~ 442 (605)
.+||+++|+||||||||||+++|+|+ +|++|++..... ....++|+||+..... .. ++...+ .. .
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~----~~-~ 93 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDAL----RD-M 93 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHH----TT-T
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHH----HH-h
Confidence 45689999999999999999999999 999998742111 1235899998741111 00 111111 11 0
Q ss_pred CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 040300 443 THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF 522 (605)
Q Consensus 443 ~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tii 522 (605)
.....+.++++. ++ ||||||+|||||+.+|++|||||||++ ++..+.++|+++ . .|.|||
T Consensus 94 ~~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii 153 (208)
T 3b85_A 94 VEPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV 153 (208)
T ss_dssp SCTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE
T ss_pred ccHHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE
Confidence 112234445544 32 999999999999999999999999999 888999999987 4 589999
Q ss_pred EEecCHHHHHh
Q 040300 523 VVEHDFIMATY 533 (605)
Q Consensus 523 vvsHD~~~~~~ 533 (605)
||||++++..
T Consensus 154 -vtHd~~~~~~ 163 (208)
T 3b85_A 154 -VTGDITQVDL 163 (208)
T ss_dssp -EEEC------
T ss_pred -EECCHHHHhC
Confidence 9999987653
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-25 Score=212.48 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=67.2
Q ss_pred cCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHhhcCCc
Q 040300 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK----------------QRLKAAQVVRSLLRPNS 267 (605)
Q Consensus 204 l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~----------------~r~~~~~~i~~l~~~g~ 267 (605)
.+.....+ .....||||+||++||+|++.+|++|+|||||++||+. ++..+.+.|+++.++|.
T Consensus 72 ~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~ 150 (171)
T 4gp7_A 72 LGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGF 150 (171)
T ss_dssp TTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTC
T ss_pred CCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCC
Confidence 45554444 34566999999999999999999999999999999999 66888889888877799
Q ss_pred EEEEEecCHhHHHhh
Q 040300 268 YVIVVEHDLSVLDYL 282 (605)
Q Consensus 268 tvivvsHdl~~l~~~ 282 (605)
|+|+||||++++..+
T Consensus 151 tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 151 RYVYILNSPEEVEEV 165 (171)
T ss_dssp SEEEEECSHHHHHHE
T ss_pred cEEEEeCCHHHhhhh
Confidence 999999999999763
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=230.41 Aligned_cols=71 Identities=27% Similarity=0.306 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 217 LSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
|||||+||++||++|+.+| ++||||||||+||+..+..+.+.|+++. +|.+||+||||++++. +||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~-~~d~i~~l 368 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAA-RAHHHYKV 368 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHT-TCSEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHh-hcCeEEEE
Confidence 5999999999999999999 9999999999999999999999999998 5899999999998875 69999999
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-27 Score=256.46 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=119.7
Q ss_pred ceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCc-e-eeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 83 TTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG-R-FNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G-~-i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
++++|+..+|.+ ++|++++|+|+||||||||+|+|+|+++|+.| + +....+....+
T Consensus 124 l~~~y~~vsl~i------~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i---------------- 181 (460)
T 2npi_A 124 LHFMLEKIRMSN------FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPI---------------- 181 (460)
T ss_dssp HHHHHHHHHHHS------SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCS----------------
T ss_pred hhehhhcCceEe------CCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCe----------------
Confidence 344554334444 69999999999999999999999999999999 7 63211111000
Q ss_pred HHHHHHhhcccccccchhhhhchhhh-hc-----CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH--Hc
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQ-VL-----DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV--AV 232 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~-~l-----~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a--L~ 232 (605)
.+.+|.....+.....++.+ .+ .......++.++++.+|+.+..+ +.+|||||+||++||+| |+
T Consensus 182 ------~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~ 253 (460)
T 2npi_A 182 ------FTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLH 253 (460)
T ss_dssp ------SSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHH
T ss_pred ------eeeccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhc
Confidence 11122211100000000100 00 00001223456788899988766 89999999999999999 99
Q ss_pred cCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHh------HHHhhcCE-----EEEEe
Q 040300 233 QNAEI----YMFDE-PSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLS------VLDYLSDF-----ICCLY 290 (605)
Q Consensus 233 ~~p~v----lllDE-Pts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~------~l~~~~D~-----i~vl~ 290 (605)
.+|++ ||||| ||++||+. +..+.++++++ +.|+|+|+||.. ++..+||+ |++|.
T Consensus 254 ~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 254 LDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred cCcccCcceEEEeCCcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 99999 99999 99999998 65666666554 788999999987 77789999 99996
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=221.44 Aligned_cols=81 Identities=28% Similarity=0.382 Sum_probs=76.0
Q ss_pred hcccCCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhc
Q 040300 210 IDRNVGDLSGGELQRFAIAVVAV------QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLS 283 (605)
Q Consensus 210 ~dr~v~~LSGGe~QRvaIA~aL~------~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~ 283 (605)
+++++.+|||||+||++||+||+ .+|++|||||||++||+..+..+.++|+++.+.|.|||+||||+++ ...|
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTC
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhC
Confidence 46899999999999999999999 7999999999999999999999999999998889999999999998 5679
Q ss_pred CEEEEEeC
Q 040300 284 DFICCLYG 291 (605)
Q Consensus 284 D~i~vl~g 291 (605)
|++++|.+
T Consensus 352 d~~~~l~~ 359 (365)
T 3qf7_A 352 DRKLRITG 359 (365)
T ss_dssp SCEEEEET
T ss_pred CEEEEEEC
Confidence 99999974
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-24 Score=208.12 Aligned_cols=137 Identities=13% Similarity=0.132 Sum_probs=99.1
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCC-eeeee-ccc--cCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHH
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPD-SVEDS-DVE--IPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDV 451 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~-~G~i~-~~~--~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~ 451 (605)
+++|+||||||||||+++|+|++... .|... ... .....++|++|+... .+.+.... .+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~------~~~~~~~~--~~--------- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEG------KKKIFSSK--FF--------- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTC------CEEEEEET--TC---------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcH------HHHHHHhh--cC---------
Confidence 58999999999999999999998532 22211 000 112457888886411 11110000 00
Q ss_pred HhhcCCchhhccCcCcCChhHHHHHHHHHH-----HccCCCEEEEec--CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 040300 452 MKPLLIEQLMDQEVVNLSGGELQRVALCLC-----LGKPADIYLIDE--PSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524 (605)
Q Consensus 452 l~~l~l~~~~~~~~~~LSGGe~QRvaiA~a-----L~~~p~lllLDE--Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivv 524 (605)
.-....++++.+|||||+||++||+| |+.+|++||||| ||++||+..+..+.++|++ .+.|+|++
T Consensus 65 ----~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~ 136 (178)
T 1ye8_A 65 ----TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVAT 136 (178)
T ss_dssp ----CCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEE
T ss_pred ----CccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEE
Confidence 00135678899999999999999996 999999999999 9999999998888777654 47778888
Q ss_pred e---cCHHHHHhhcCE
Q 040300 525 E---HDFIMATYLADR 537 (605)
Q Consensus 525 s---HD~~~~~~~adr 537 (605)
+ ||+.++..+|+|
T Consensus 137 ~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 137 IPIRDVHPLVKEIRRL 152 (178)
T ss_dssp CCSSCCSHHHHHHHTC
T ss_pred EccCCCchHHHHHHhc
Confidence 8 599999999998
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-23 Score=214.93 Aligned_cols=83 Identities=28% Similarity=0.339 Sum_probs=72.1
Q ss_pred hhccCcCcCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q 040300 460 LMDQEVVNLSGGELQRVALCLCLG----KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLA 535 (605)
Q Consensus 460 ~~~~~~~~LSGGe~QRvaiA~aL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~a 535 (605)
..++++.+|||||||||+||++|+ .+|++|||||||++||+..+..+.++|+++ . .+.|+|+|||+.+ +..+|
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~-~~~~vi~~tH~~~-~~~~~ 288 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-S-KHTQFIVITHNKI-VMEAA 288 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-T-TTSEEEEECCCTT-GGGGC
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCCeEEEEECCHH-HHhhC
Confidence 356778999999999999999997 689999999999999999999999999997 3 3789999999965 45689
Q ss_pred CEE--EEEeCCc
Q 040300 536 DRV--IVYEGQP 545 (605)
Q Consensus 536 drv--iv~~g~~ 545 (605)
|++ +++.++.
T Consensus 289 d~~~~v~~~~g~ 300 (322)
T 1e69_A 289 DLLHGVTMVNGV 300 (322)
T ss_dssp SEEEEEEESSSC
T ss_pred ceEEEEEEeCCE
Confidence 987 6676544
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-25 Score=216.97 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=87.3
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhccccc-ccc-hh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYV-DHI-PK 178 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~-~~~-~~ 178 (605)
.+|++++|+||||||||||+|+|+|+ +|+.|++... .........+ .. ..+.+|.. +.+ +.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~-~~~~~~~~~~-~~--------------ig~v~q~~~enl~~~ 82 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI-ILTRPAVEAG-EK--------------LGFLPGTLNEKIDPY 82 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE-EEEECSCCTT-CC--------------CCSSCC------CTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE-EecCCchhhh-cc--------------eEEecCCHHHHHHHH
Confidence 58999999999999999999999999 9999988421 0000000000 00 01111110 000 00
Q ss_pred hhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 040300 179 AVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV 258 (605)
Q Consensus 179 ~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~ 258 (605)
. ..+...+.......+++++++. ++ ||+||++|||||+.+|++||||||||+ .+..+.++
T Consensus 83 ~--~~~~~~~~~~~~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~ 142 (208)
T 3b85_A 83 L--RPLHDALRDMVEPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMF 142 (208)
T ss_dssp T--HHHHHHHTTTSCTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHH
T ss_pred H--HHHHHHHHHhccHHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHH
Confidence 0 0000000000011234445544 33 999999999999999999999999999 77889999
Q ss_pred HHHhhcCCcEEEEEecCHhHHHh
Q 040300 259 VRSLLRPNSYVIVVEHDLSVLDY 281 (605)
Q Consensus 259 i~~l~~~g~tvivvsHdl~~l~~ 281 (605)
|+++ ++|.||| ||||+++++.
T Consensus 143 l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 143 LTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp HTTB-CTTCEEE-EEEC------
T ss_pred HHHh-cCCCEEE-EECCHHHHhC
Confidence 9998 6689999 9999987764
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-25 Score=217.21 Aligned_cols=162 Identities=11% Similarity=-0.033 Sum_probs=112.4
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc---cCcceeEeecCcCCCCCcCcHHHHHHhh--hcc--
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE---IPEFNVSYKPQKISPKFQSTVRHLLHQK--IRD-- 440 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~---~~~~~i~y~~q~~~~~~~~tv~~~~~~~--~~~-- 440 (605)
++.+||+++|+||||||||||+|+|+|+++...+.+. ... .....++|++|+......+++.+++... ...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~ 95 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGL 95 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCch
Confidence 3444589999999999999999999999864433221 000 0123578888874332223333322100 000
Q ss_pred ---CCCC---HHHHHHH------HhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC----CHHHHH
Q 040300 441 ---SYTH---PQFVSDV------MKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL----DSEQRI 504 (605)
Q Consensus 441 ---~~~~---~~~~~~~------l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L----D~~~~~ 504 (605)
.... ...+.+. ++.+++....++.+.+|| +|+.+|++++|||||+++ |+..+.
T Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~ 164 (207)
T 1znw_A 96 HRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQR 164 (207)
T ss_dssp EEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHH
T ss_pred hhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHH
Confidence 0001 1223333 556677777888888998 899999999999999998 788999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe
Q 040300 505 VAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542 (605)
Q Consensus 505 ~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~ 542 (605)
.+.++++++..+.|.|+|+||||++++..+||||+++.
T Consensus 165 ~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 165 RLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999876568999999999999999999999984
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-21 Score=205.37 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=71.6
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhc
Q 040300 208 QVIDRNVGDLSGGELQRFAIAVVAV----QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLS 283 (605)
Q Consensus 208 ~~~dr~v~~LSGGe~QRvaIA~aL~----~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~ 283 (605)
+..++++.+|||||+||++||++|+ .+|++|||||||++||+..+..+.++|+++. .+.+||+|||+.+ +..+|
T Consensus 211 ~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~-~~~~~ 288 (322)
T 1e69_A 211 GRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI-VMEAA 288 (322)
T ss_dssp TSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT-GGGGC
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH-HHhhC
Confidence 3467788999999999999999997 6899999999999999999999999999985 4889999999965 45689
Q ss_pred CEE--EEEeC
Q 040300 284 DFI--CCLYG 291 (605)
Q Consensus 284 D~i--~vl~g 291 (605)
|++ ++|.+
T Consensus 289 d~~~~v~~~~ 298 (322)
T 1e69_A 289 DLLHGVTMVN 298 (322)
T ss_dssp SEEEEEEESS
T ss_pred ceEEEEEEeC
Confidence 987 55543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-25 Score=235.10 Aligned_cols=172 Identities=13% Similarity=0.136 Sum_probs=128.6
Q ss_pred eeeeEEEEEeece---------------eecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec--cccCcceeEeecC
Q 040300 358 TQGNFKLKVVEGE---------------FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD--VEIPEFNVSYKPQ 420 (605)
Q Consensus 358 ~l~~~~l~v~~G~---------------~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~--~~~~~~~i~y~~q 420 (605)
.+++++|++.+|+ ...+.+++|+||||||||||+|+|+|+.+|++|++.. .... +.+|++|
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t--~~~~v~q 115 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT--MERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------CCCEEEE
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc--eeEEecc
Confidence 4567777777774 1122389999999999999999999999999998741 1111 2378888
Q ss_pred cCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChh--HHHHHHHHHHHcc----------CCCE
Q 040300 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGG--ELQRVALCLCLGK----------PADI 488 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGG--e~QRvaiA~aL~~----------~p~l 488 (605)
+. ...+.++.++..... . ...+.++++.+++.+. +..+. |||| |+||++||++|++ +|++
T Consensus 116 ~~-~~~~ltv~D~~g~~~--~---~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGS--T---NFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS 187 (413)
T ss_dssp CS-SCTTEEEEECCCGGG--S---SCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred cc-ccCCeeehHhhcccc--h---HHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcc
Confidence 73 223456555432111 1 1235678888988765 33344 9999 9999999999999 9999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHh----cC----CcEEEEEecCHHH--HHhhcCEEE
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFIL----HA----KKTAFVVEHDFIM--ATYLADRVI 539 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~----~~----g~tiivvsHD~~~--~~~~adrvi 539 (605)
++|||||+|||+..+..+++.|+++.. +. ..+++++||++.. +..++|++.
T Consensus 188 llLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 188 DITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred cccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999999999999999999999852 22 3578889999887 888899885
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-22 Score=209.49 Aligned_cols=163 Identities=14% Similarity=0.099 Sum_probs=123.8
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------------cceeEeecCcCC-C
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------------EFNVSYKPQKIS-P 424 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------------~~~i~y~~q~~~-~ 424 (605)
.++|++.+| ++++|+||||||||||++.|+|+++|++|++. +.+.. ...++|++|+.. .
T Consensus 92 ~l~~~~~~g-----~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 92 ELQLGFRKP-----AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp SCCCCSSSC-----EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccCCC-----cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 455555555 79999999999999999999999999999875 11111 125899999865 5
Q ss_pred CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHH
Q 040300 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD--IYLIDEPSAYLDSEQ 502 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~--lllLDEPt~~LD~~~ 502 (605)
.+..++.+++........ + ..+++.+|+.+..++.+.+|| +||++|||||+.+|+ +|+|| ||+|||+..
T Consensus 167 ~~~~~v~e~l~~~~~~~~-d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~ 237 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEGY-D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 237 (302)
T ss_dssp CHHHHHHHHHHHHHHTTC-S----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred CHHHHHHHHHHHHHHcCC-c----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHH
Confidence 555678887643211111 1 135677888877788899999 999999999999999 99999 999999975
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEec---------CHHHHHhhcCEEEEEeC
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEH---------DFIMATYLADRVIVYEG 543 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsH---------D~~~~~~~adrviv~~g 543 (605)
+ ++++.++.|.|+|++|| .+..+..+.+.|.++..
T Consensus 238 ~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~ 281 (302)
T 3b9q_A 238 Q------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGV 281 (302)
T ss_dssp H------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred H------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeC
Confidence 5 34554446899999999 67778788889988873
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=196.70 Aligned_cols=81 Identities=31% Similarity=0.463 Sum_probs=72.4
Q ss_pred hhccCcCcCChhHHH------HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q 040300 460 LMDQEVVNLSGGELQ------RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATY 533 (605)
Q Consensus 460 ~~~~~~~~LSGGe~Q------RvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~ 533 (605)
..++++.+||||||| |+++|++|+.+|++|||||||+|||+..+..+.++|+++.. .+.|||+||||.+ +..
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~~-~~~ 318 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-LKD 318 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-GGG
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChHH-HHH
Confidence 356789999999999 67788888999999999999999999999999999999854 4789999999965 567
Q ss_pred hcCEEEEEe
Q 040300 534 LADRVIVYE 542 (605)
Q Consensus 534 ~adrviv~~ 542 (605)
+|||+++++
T Consensus 319 ~~d~~~~l~ 327 (339)
T 3qkt_A 319 AADHVIRIS 327 (339)
T ss_dssp GCSEEEEEE
T ss_pred hCCEEEEEE
Confidence 899999986
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=199.13 Aligned_cols=83 Identities=29% Similarity=0.426 Sum_probs=74.3
Q ss_pred hhhcccCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHh
Q 040300 208 QVIDRNVGDLSGGELQ------RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDY 281 (605)
Q Consensus 208 ~~~dr~v~~LSGGe~Q------RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~ 281 (605)
...++++.+|||||+| |+++|++|+.+|++|||||||++||+..+..+.++|+++.+.+.+||+||||.+ +..
T Consensus 240 ~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~ 318 (339)
T 3qkt_A 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKD 318 (339)
T ss_dssp TTEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGG
T ss_pred ccCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHH
Confidence 3457889999999999 677888888999999999999999999999999999999877899999999965 567
Q ss_pred hcCEEEEEeC
Q 040300 282 LSDFICCLYG 291 (605)
Q Consensus 282 ~~D~i~vl~g 291 (605)
+||++++|..
T Consensus 319 ~~d~~~~l~~ 328 (339)
T 3qkt_A 319 AADHVIRISL 328 (339)
T ss_dssp GCSEEEEEEE
T ss_pred hCCEEEEEEe
Confidence 8999999964
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-22 Score=191.74 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=66.3
Q ss_pred hhhcccCCCCChHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhhcCCcEEEEEe---cCHh
Q 040300 208 QVIDRNVGDLSGGELQRFAIAVV-----AVQNAEIYMFDE--PSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE---HDLS 277 (605)
Q Consensus 208 ~~~dr~v~~LSGGe~QRvaIA~a-----L~~~p~vlllDE--Pts~LD~~~r~~~~~~i~~l~~~g~tvivvs---Hdl~ 277 (605)
...++++.+|||||+||++||+| ++.+|++||||| ||++||+..+..+.+++++ .+.|+|+++ ||+.
T Consensus 68 ~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~ 144 (178)
T 1ye8_A 68 KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHP 144 (178)
T ss_dssp SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSH
T ss_pred ccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCch
Confidence 35778899999999999999996 999999999999 9999999988887777764 467788888 5999
Q ss_pred HHHhhcCE
Q 040300 278 VLDYLSDF 285 (605)
Q Consensus 278 ~l~~~~D~ 285 (605)
+++.++++
T Consensus 145 ~~~~i~~r 152 (178)
T 1ye8_A 145 LVKEIRRL 152 (178)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 99999998
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-21 Score=204.98 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=123.9
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------------cceeEeecCcCC-C
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------------EFNVSYKPQKIS-P 424 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------------~~~i~y~~q~~~-~ 424 (605)
.++|++.+| ++++|+||||||||||++.|+|+++|++|++. +.+.. ...++|++|+.. .
T Consensus 149 ~l~l~~~~g-----~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~ 223 (359)
T 2og2_A 149 ELQLGFRKP-----AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 223 (359)
T ss_dssp SCCCCSSSS-----EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSC
T ss_pred CcceecCCC-----eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccccc
Confidence 345555555 79999999999999999999999999998875 11111 125899999865 5
Q ss_pred CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHH
Q 040300 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD--IYLIDEPSAYLDSEQ 502 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~--lllLDEPt~~LD~~~ 502 (605)
.+..++.+++........ + ..+++.+|+.+..++.+.+|| +||++|||+|+.+|+ +|+|| ||+|||+..
T Consensus 224 ~p~~tv~e~l~~~~~~~~-d----~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~ 294 (359)
T 2og2_A 224 KAATVLSKAVKRGKEEGY-D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 294 (359)
T ss_dssp CHHHHHHHHHHHHHHTTC-S----EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred ChhhhHHHHHHHHHhCCC-H----HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence 555678777643211111 1 135677888877788899999 999999999999999 99999 999999976
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEec---------CHHHHHhhcCEEEEEe
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEH---------DFIMATYLADRVIVYE 542 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsH---------D~~~~~~~adrviv~~ 542 (605)
+. +++.+..+.|+|++|| .+..+..+...|..+.
T Consensus 295 ~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig 337 (359)
T 2og2_A 295 QA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG 337 (359)
T ss_dssp HH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEE
T ss_pred HH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEe
Confidence 53 4454446899999999 5677777888998886
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-22 Score=218.56 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=110.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchh
Q 040300 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNV 184 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v 184 (605)
++||+|+||||||||+|+|+|+++|+.|++..... .. . ..+. .+|. ...+.. ++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~--~~-t-~~~~------------------v~q~-~~~~~l---tv 124 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV--EV-T-MERH------------------PYKH-PNIPNV---VF 124 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC--------CCCE------------------EEEC-SSCTTE---EE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe--ec-c-eeEE------------------eccc-cccCCe---ee
Confidence 99999999999999999999999999998752210 00 0 0011 1111 000000 11
Q ss_pred hhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChH--HHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHH
Q 040300 185 GQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG--ELQRFAIAVVAVQ----------NAEIYMFDEPSSYLDVKQR 252 (605)
Q Consensus 185 ~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG--e~QRvaIA~aL~~----------~p~vlllDEPts~LD~~~r 252 (605)
.+...-...+.++.++++.+++.+.. ..+. |||| |+||++||++|++ +|++++|||||++||+..+
T Consensus 125 ~D~~g~~~~~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~ 202 (413)
T 1tq4_A 125 WDLPGIGSTNFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDK 202 (413)
T ss_dssp EECCCGGGSSCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCH
T ss_pred hHhhcccchHHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHH
Confidence 11110000123467888999987653 3334 9999 9999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhh-----cC----CcEEEEEecCHhH--HHhhcCEEE
Q 040300 253 LKAAQVVRSLL-----RP----NSYVIVVEHDLSV--LDYLSDFIC 287 (605)
Q Consensus 253 ~~~~~~i~~l~-----~~----g~tvivvsHdl~~--l~~~~D~i~ 287 (605)
.++.+.|+++. +. ..+|++++|++.. ++.++|+|.
T Consensus 203 ~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 203 EKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999999984 22 3568889999998 889999884
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-22 Score=196.61 Aligned_cols=172 Identities=10% Similarity=-0.064 Sum_probs=108.0
Q ss_pred CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCce--eeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccc
Q 040300 99 VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHI 176 (605)
Q Consensus 99 ~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~--i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~ 176 (605)
.+.+|++++|+||||||||||+|+|+|++++..+. +...+..... ..-.|..+|+.. .+ ..+... +.+..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~-~~~i~~~~q~~~--~~-~~~~~~---~~l~~- 87 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGE-VDGVDYHFIDPT--RF-QQLIDQ---GELLE- 87 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTC-CBTTTBEECCHH--HH-HHHHHT---TCEEE-
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccc-cCCCeeEecCHH--HH-HHHHhc---CCcee-
Confidence 34799999999999999999999999998532221 1110000000 000111122211 01 111110 00000
Q ss_pred hhhhhchhh-hhcCchHHHHHHHHH------HhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC--
Q 040300 177 PKAVQGNVG-QVLDQKDERDMKADL------CTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYL-- 247 (605)
Q Consensus 177 ~~~~~~~v~-~~l~~~~~~~~~~~~------l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~L-- 247 (605)
...+.++.. .-......++++.+. ++.+|+..+.++.+.+|| +|+.+|++++|||||++|
T Consensus 88 ~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~ 156 (207)
T 1znw_A 88 WAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGT 156 (207)
T ss_dssp EEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSC
T ss_pred ehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCC
Confidence 000000000 001122334455555 677788788899999999 999999999999999998
Q ss_pred --CHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 248 --DVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 248 --D~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
|+..+..+.++++++.+ .|.|+|+||||++++..+||+|++|
T Consensus 157 ~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 157 ETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 78899999999999975 4899999999999999999999998
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=167.44 Aligned_cols=81 Identities=30% Similarity=0.440 Sum_probs=73.7
Q ss_pred hhccCcCcCChhHHHHHHHH------HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q 040300 460 LMDQEVVNLSGGELQRVALC------LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATY 533 (605)
Q Consensus 460 ~~~~~~~~LSGGe~QRvaiA------~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~ 533 (605)
..++++.+|||||||||+|| |||+.+|++|||||||+|||+.++..+.+.|+++.. .|.|||+||||++ +..
T Consensus 50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~-~~~ 127 (148)
T 1f2t_B 50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-LKD 127 (148)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-GGG
T ss_pred cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChHH-HHH
Confidence 36789999999999999876 899999999999999999999999999999999854 4899999999984 567
Q ss_pred hcCEEEEEe
Q 040300 534 LADRVIVYE 542 (605)
Q Consensus 534 ~adrviv~~ 542 (605)
+||++++++
T Consensus 128 ~~d~ii~l~ 136 (148)
T 1f2t_B 128 AADHVIRIS 136 (148)
T ss_dssp GCSEEEEEE
T ss_pred hCCEEEEEE
Confidence 999999995
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-19 Score=166.70 Aligned_cols=82 Identities=28% Similarity=0.402 Sum_probs=75.4
Q ss_pred hhcccCCCCChHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhh
Q 040300 209 VIDRNVGDLSGGELQRFAIA------VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYL 282 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA------~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~ 282 (605)
..++++.+|||||+||++|| +||+.+|+++||||||++||+..+..+.+.|+++.+.|.|||+||||++ +..+
T Consensus 50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~ 128 (148)
T 1f2t_B 50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDA 128 (148)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGG
T ss_pred cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHh
Confidence 46899999999999999876 8999999999999999999999999999999999777899999999994 6679
Q ss_pred cCEEEEEeC
Q 040300 283 SDFICCLYG 291 (605)
Q Consensus 283 ~D~i~vl~g 291 (605)
||++++|..
T Consensus 129 ~d~ii~l~~ 137 (148)
T 1f2t_B 129 ADHVIRISL 137 (148)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEEc
Confidence 999999953
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-21 Score=194.84 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=92.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----CcceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCCHHHH
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----PEFNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTHPQFV 448 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~~~~~ 448 (605)
.++|+||||||||||+++|+|+..|++|++. +... ....++|++|+......+||.+++...... .......+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 5899999999999999999999999999864 1111 124699999987665566777654321111 01111222
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~ 528 (605)
.+.+. ..+.+..+.+|||||+|||++|||++. +|+||||+++||+.. .++++++.. . .++|+|.|..
T Consensus 84 ~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~K~ 150 (270)
T 3sop_A 84 EKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIAKA 150 (270)
T ss_dssp HHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEETTG
T ss_pred HHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEecc
Confidence 33332 456677889999999999999999886 999999999999976 345666533 3 7888888865
Q ss_pred H
Q 040300 529 I 529 (605)
Q Consensus 529 ~ 529 (605)
+
T Consensus 151 D 151 (270)
T 3sop_A 151 D 151 (270)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.2e-23 Score=201.98 Aligned_cols=171 Identities=14% Similarity=0.090 Sum_probs=107.9
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec-ccc--------CcceeEeecCcCCCCCcC
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD-VEI--------PEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~-~~~--------~~~~i~y~~q~~~~~~~~ 428 (605)
.+++++|++.+| ++++|+||||||||||+++|+|++ | |.+.. ... ....++|++|+.......
T Consensus 12 ~l~~isl~i~~G-----~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 12 SGLVPRGSMNNI-----YPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ----------CC-----CCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccCCceecCCC-----CEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 578899998888 689999999999999999999998 6 65531 110 013467777753211110
Q ss_pred cH-HHHHHh-hhcc-CC-CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHH-----HHHHccCCCEEEEecCCCCCC
Q 040300 429 TV-RHLLHQ-KIRD-SY-THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVAL-----CLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 429 tv-~~~~~~-~~~~-~~-~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvai-----A~aL~~~p~lllLDEPt~~LD 499 (605)
+. .+++.. .+.. .+ .....+.++++...+. +++ .+|||||+||++| |++|+.+|++++|||||+++|
T Consensus 84 ~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp HHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred hhccchhhhhhcccccCCCcHHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 00 000000 0000 01 1123455666654432 222 6799999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc------CCcEEEEEecCHHHHHhhcCEEEE
Q 040300 500 SEQRIVAAKVIKRFILH------AKKTAFVVEHDFIMATYLADRVIV 540 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~------~g~tiivvsHD~~~~~~~adrviv 540 (605)
.++...+.+.|.++..+ ...+.|+|+||++++...+++++.
T Consensus 160 ~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 160 TENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 98888888888775432 356778888888888877776654
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-21 Score=199.26 Aligned_cols=153 Identities=11% Similarity=0.009 Sum_probs=111.5
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccC---CCCHHH
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDS---YTHPQF 447 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~---~~~~~~ 447 (605)
+.+|+++||+||||||||||+++|+|+++|+.|. ..++|++|+..... .|+.+++....... ..+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~--------~~v~~v~qd~~~~~-~t~~e~~~~~~~~g~~~~~d~~~ 157 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH--------PRVDLVTTDGFLYP-NAELQRRNLMHRKGFPESYNRRA 157 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC--------CCEEEEEGGGGBCC-HHHHHHTTCTTCTTSGGGBCHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC--------CeEEEEecCccCCc-ccHHHHHHHHHhcCCChHHHHHH
Confidence 4567899999999999999999999999997653 35899999865433 38887753211001 112345
Q ss_pred HHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 040300 448 VSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527 (605)
Q Consensus 448 ~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD 527 (605)
+.++++.++ ....+.++.+|||||+|||++|++++.+|+|||||||+..+|+.. ..+.++ .+ ..|+|+||
T Consensus 158 ~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~---~D-~~I~V~a~ 227 (312)
T 3aez_A 158 LMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDL---FD-FSLYVDAR 227 (312)
T ss_dssp HHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGG---CS-EEEEEEEC
T ss_pred HHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHh---cC-cEEEEECC
Confidence 677888887 555567889999999999999999999999999999999998522 112222 23 45788888
Q ss_pred HHHHH-hhcCEEEEEe
Q 040300 528 FIMAT-YLADRVIVYE 542 (605)
Q Consensus 528 ~~~~~-~~adrviv~~ 542 (605)
.+... .+.+|.+.+.
T Consensus 228 ~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 228 IEDIEQWYVSRFLAMR 243 (312)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 86643 3456655543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-19 Score=182.82 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=107.0
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCee-eeec--cccCc----ceeEeecCcCCCCCcCcH
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSV-EDSD--VEIPE----FNVSYKPQKISPKFQSTV 430 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G-~i~~--~~~~~----~~i~y~~q~~~~~~~~tv 430 (605)
.++++++. +.+|++++|+||||+|||||++.|+|.+.|++| .+.. ...+. .++.+..+.... ++
T Consensus 24 ~Ld~i~~~-----l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~ 94 (296)
T 1cr0_A 24 GINDKTLG-----ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQ 94 (296)
T ss_dssp THHHHHCS-----BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GG
T ss_pred HHHHHhcC-----CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hh
Confidence 35555544 455589999999999999999999999988876 3320 00000 011111111110 11
Q ss_pred HHHHHhh-hccCCCCHHHHHHHHhhcCCchhhccCcCcCChhH-HHHHHHHHHHccCCCEEEEecCCC---C---CCH-H
Q 040300 431 RHLLHQK-IRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGE-LQRVALCLCLGKPADIYLIDEPSA---Y---LDS-E 501 (605)
Q Consensus 431 ~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe-~QRvaiA~aL~~~p~lllLDEPt~---~---LD~-~ 501 (605)
.+.+... ... ......+.++++..++. ....+.++|.+| +||+. |+++..+|+++||||||+ + +|. .
T Consensus 95 ~~~l~~~~~~~-~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~ 170 (296)
T 1cr0_A 95 SDSLKREIIEN-GKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERK 170 (296)
T ss_dssp CHHHHHHHHHH-THHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CH
T ss_pred ccccccCCCCH-HHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHH
Confidence 0111000 000 00011223333333332 233456789999 55666 999999999999999999 5 455 6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCH--H--------------------HHHhhcCEEEEEeCC
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDF--I--------------------MATYLADRVIVYEGQ 544 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~--~--------------------~~~~~adrviv~~g~ 544 (605)
....+++.|++++++.+.|||++||+. + .+.++||+|++|..+
T Consensus 171 ~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 171 MIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 778899999998777799999999994 5 788899999999743
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-20 Score=218.36 Aligned_cols=155 Identities=18% Similarity=0.163 Sum_probs=111.7
Q ss_pred eeeeeEEEEEee--ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeE-eecCcCCCCCcCcHHHH
Q 040300 357 KTQGNFKLKVVE--GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVS-YKPQKISPKFQSTVRHL 433 (605)
Q Consensus 357 ~~l~~~~l~v~~--G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~-y~~q~~~~~~~~tv~~~ 433 (605)
.++++++|++.+ .+...|++++|+||||||||||||+| |++.+. ..+| |+||+.. ..++.+.
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~-----------aqiG~~Vpq~~~---~l~v~d~ 834 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM-----------AQMGCYVPAEVC---RLTPIDR 834 (1022)
T ss_dssp CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-----------HTTTCCEESSEE---EECCCSB
T ss_pred eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-----------hheeEEeccCcC---CCCHHHH
Confidence 457788887765 11223589999999999999999999 987642 1244 8898642 2233222
Q ss_pred HHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH-HHHHHHHHH
Q 040300 434 LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR-IVAAKVIKR 512 (605)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~-~~l~~~l~~ 512 (605)
+ +..+|+.+...+..+++|+++++ +++|++++.+|+|+||||||+|+|+... ..++.+|+.
T Consensus 835 I-----------------~~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~ 896 (1022)
T 2o8b_B 835 V-----------------FTRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKE 896 (1022)
T ss_dssp E-----------------EEECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred H-----------------HHHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHH
Confidence 1 22344444445566788887665 9999999999999999999999999885 557889998
Q ss_pred HHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 513 FILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 513 l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
+.++.|.++|++|||++++..++|++.++.|.
T Consensus 897 L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~ 928 (1022)
T 2o8b_B 897 LAETIKCRTLFSTHYHSLVEDYSQNVAVRLGH 928 (1022)
T ss_dssp HHHTSCCEEEEECCCHHHHHHTSSCSSEEEEE
T ss_pred HHhcCCCEEEEEeCCHHHHHHhCCcceeecCe
Confidence 86555899999999999999999999887654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-19 Score=201.59 Aligned_cols=148 Identities=14% Similarity=0.064 Sum_probs=114.8
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCce-eeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR-FNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK 178 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~-i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~ 178 (605)
+.+|++++|+|+||||||||++.++|...|+ |. +. ++.+.+.. ..+.. ... .+
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi----------~~~~ee~~---~~l~~-~~~------~~----- 331 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACAN-KERAI----------LFAYEESR---AQLLR-NAY------SW----- 331 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEE----------EEESSSCH---HHHHH-HHH------TT-----
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEE----------EEEEeCCH---HHHHH-HHH------Hc-----
Confidence 4699999999999999999999999998885 53 21 12221110 00100 000 00
Q ss_pred hhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----HHH
Q 040300 179 AVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK-----QRL 253 (605)
Q Consensus 179 ~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~-----~r~ 253 (605)
+ +. +++ +..+|+..+.++.+.+|||||+||+++|+++..+|+++|+| ||++||.. .+.
T Consensus 332 ---g-----~~-------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 332 ---G-----MD-------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp ---S-----CC-------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred ---C-----CC-------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 0 00 111 22456777788899999999999999999999999999999 99999999 999
Q ss_pred HHHHHHHHhhcCCcEEEEEecCH----------hHHHhhcCEEEEEe
Q 040300 254 KAAQVVRSLLRPNSYVIVVEHDL----------SVLDYLSDFICCLY 290 (605)
Q Consensus 254 ~~~~~i~~l~~~g~tvivvsHdl----------~~l~~~~D~i~vl~ 290 (605)
.+.++++.+++.|.|||+|+|+. .++.++||+|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~ 441 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 441 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEE
Confidence 99999999988899999999999 88889999999995
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-20 Score=195.25 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=109.5
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH--HHH--HHHHHHHhhcccccc-
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF--TRI--LEDNLKAIIKPQYVD- 174 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~--~~~--~~~~~~~~~~~q~~~- 174 (605)
+.+|++++|+|+|||||||+++.|+|.++|+.|++. +.|.+..... .++ +.......+.+|...
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~-----------l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~ 165 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL-----------MAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 165 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-----------EECCCCSCHHHHHHHHHHHHHHTCEEECCC--C
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE-----------EEeecccchhHHHHHHHHHHhcCceEEEecCCc
Confidence 468999999999999999999999999999999874 1222211110 000 001111222233222
Q ss_pred cchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHH
Q 040300 175 HIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYLDVKQR 252 (605)
Q Consensus 175 ~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~LD~~~r 252 (605)
..|.. ++.+.+...........+++.+|+.+..++.+.+|| +||++||+||+.+|+ +|+|| ||++||+..+
T Consensus 166 ~~~~~---~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~ 238 (302)
T 3b9q_A 166 AKAAT---VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ 238 (302)
T ss_dssp CCHHH---HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH
T ss_pred cCHHH---HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH
Confidence 22211 122211100000001135677888888889999999 999999999999999 99999 9999998754
Q ss_pred HHHHHHHHHhhc-CCcEEEEEec---------CHhHHHhhcCEEEEEe
Q 040300 253 LKAAQVVRSLLR-PNSYVIVVEH---------DLSVLDYLSDFICCLY 290 (605)
Q Consensus 253 ~~~~~~i~~l~~-~g~tvivvsH---------dl~~l~~~~D~i~vl~ 290 (605)
++++.+ .|.|+|++|| .++.+....+.|..+.
T Consensus 239 ------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~ 280 (302)
T 3b9q_A 239 ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG 280 (302)
T ss_dssp ------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEE
T ss_pred ------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEe
Confidence 244443 4899999999 5667777777887774
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-22 Score=205.83 Aligned_cols=156 Identities=9% Similarity=0.043 Sum_probs=112.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
++.|+ ...+++++|++.+| |+++|+||||||||||+++|+|++ +|+| ++|++|... .+..
T Consensus 108 s~~y~--~~vL~~vsl~i~~G-----e~vaIvGpsGsGKSTLl~lL~gl~---~G~I---------~~~v~q~~~-lf~~ 167 (305)
T 2v9p_A 108 ELITF--INALKLWLKGIPKK-----NCLAFIGPPNTGKSMLCNSLIHFL---GGSV---------LSFANHKSH-FWLA 167 (305)
T ss_dssp CHHHH--HHHHHHHHHTCTTC-----SEEEEECSSSSSHHHHHHHHHHHH---TCEE---------ECGGGTTSG-GGGG
T ss_pred EEEcC--hhhhccceEEecCC-----CEEEEECCCCCcHHHHHHHHhhhc---CceE---------EEEecCccc-cccc
Confidence 56665 23578888887777 789999999999999999999998 6876 467787643 3445
Q ss_pred cHHH-HHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040300 429 TVRH-LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAA 507 (605)
Q Consensus 429 tv~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~ 507 (605)
|+++ ++... .. . . ..+.+.++.+ +...++ ...|||||||| ||||+++|+||| |++||+.++..+.
T Consensus 168 ti~~~ni~~~-~~-~-~-~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 168 SLADTRAALV-DD-A-T-HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp GGTTCSCEEE-EE-E-C-HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG
T ss_pred cHHHHhhccC-cc-c-c-HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH
Confidence 6654 43211 10 1 1 1334455553 444444 78999999999 999999999999 9999998887664
Q ss_pred HHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 508 KVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 508 ~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
. +||++..+ ..|||| +|+++.. ...++++++
T Consensus 234 ~---------------ltH~~~~~-~~aD~i-vl~~G~i--v~~g~~~el 264 (305)
T 2v9p_A 234 Y---------------LHSRVQTF-RFEQPC-TDESGEQ--PFNITDADW 264 (305)
T ss_dssp G---------------GTTTEEEE-ECCCCC-CCC---C--CCCCCHHHH
T ss_pred H---------------HhCCHHHH-HhCCEE-EEeCCEE--EEeCCHHHH
Confidence 1 28988765 579999 9985443 356888887
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-18 Score=175.42 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=104.6
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCc-eeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccc--cc
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG-RFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVD--HI 176 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G-~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~--~~ 176 (605)
+.+|++++|+|+||+|||||++.|+|.+.|+.| .+.. +.+ +... ..+. ..+... .+... ..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~----------~~~-e~~~--~~~~-~r~~~~--~~~~~~~~~ 95 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL----------AML-EESV--EETA-EDLIGL--HNRVRLRQS 95 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE----------EES-SSCH--HHHH-HHHHHH--HTTCCGGGC
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE----------EeC-cCCH--HHHH-HHHHHH--HcCCChhhc
Confidence 479999999999999999999999999998877 4420 111 1000 0000 011000 00000 00
Q ss_pred hhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHH-HHHHHHHHHHccCCCEEEEeCCCC---C---CCH
Q 040300 177 PKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE-LQRFAIAVVAVQNAEIYMFDEPSS---Y---LDV 249 (605)
Q Consensus 177 ~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe-~QRvaIA~aL~~~p~vlllDEPts---~---LD~ 249 (605)
+.. .... +...+..+.+.++++..++. ++..+.++|.+| +||+. |+++..+|+++|+||||+ + +|.
T Consensus 96 ~~l---~~~~-~~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~ 168 (296)
T 1cr0_A 96 DSL---KREI-IENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDE 168 (296)
T ss_dssp HHH---HHHH-HHHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------
T ss_pred ccc---ccCC-CCHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCH
Confidence 000 0000 11112223344454433332 333456799999 55555 999999999999999999 4 455
Q ss_pred -HHHHHHHHHHHHhhcC-CcEEEEEecCH--h--------------------HHHhhcCEEEEEeC
Q 040300 250 -KQRLKAAQVVRSLLRP-NSYVIVVEHDL--S--------------------VLDYLSDFICCLYG 291 (605)
Q Consensus 250 -~~r~~~~~~i~~l~~~-g~tvivvsHdl--~--------------------~l~~~~D~i~vl~g 291 (605)
.+...+.+.|++++++ |.+||+++|+. + .+..+||+|++|+.
T Consensus 169 ~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~ 234 (296)
T 1cr0_A 169 RKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec
Confidence 6667888899998765 99999999994 5 78889999999964
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-19 Score=187.08 Aligned_cols=130 Identities=16% Similarity=0.161 Sum_probs=94.9
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhh
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQK 437 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~ 437 (605)
.+++++|.+.+| ++++|+||||||||||+++|+|+++|++|.+.-..... +. .++ .. ..
T Consensus 160 ~l~~l~~~i~~g-----~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~-~~~-----~~--------~~ 218 (330)
T 2pt7_A 160 AISAIKDGIAIG-----KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IV-FKH-----HK--------NY 218 (330)
T ss_dssp HHHHHHHHHHHT-----CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CC-CSS-----CS--------SE
T ss_pred HHhhhhhhccCC-----CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cc-ccc-----ch--------hE
Confidence 456777777777 68999999999999999999999999999864111100 00 000 00 00
Q ss_pred hccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Q 040300 438 IRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517 (605)
Q Consensus 438 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 517 (605)
.. + .. . |||+||++||+||.++|++|||||||+. ++.++|+.+. ..
T Consensus 219 i~--~------------------~~----g--gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~-~g 264 (330)
T 2pt7_A 219 TQ--L------------------FF----G--GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC-SG 264 (330)
T ss_dssp EE--E------------------EC----B--TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH-TT
T ss_pred EE--E------------------Ee----C--CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh-cC
Confidence 00 0 00 0 9999999999999999999999999982 3566777764 32
Q ss_pred CcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 518 KKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 518 g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
+.|+|+++|+.. +...|||+++|..
T Consensus 265 ~~tvi~t~H~~~-~~~~~dri~~l~~ 289 (330)
T 2pt7_A 265 HKGTLTTLHAGS-SEEAFIRLANMSS 289 (330)
T ss_dssp CCCEEEEEECSS-HHHHHHHHHHHHH
T ss_pred CCEEEEEEcccH-HHHHhhhheehhc
Confidence 458999999988 6678999999873
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-19 Score=191.98 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=109.1
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH--HHH--HHHHHHHhhcccccc-
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF--TRI--LEDNLKAIIKPQYVD- 174 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~--~~~--~~~~~~~~~~~q~~~- 174 (605)
+.+|++++|+|+||||||||++.|+|.++|+.|++. +.|.+..... .++ +.......+.+|...
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~-----------l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~ 222 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL-----------MAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 222 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-----------EECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE-----------EecccccccchhHHHHHHHHhcCeEEEEecccc
Confidence 468999999999999999999999999999999874 2222211100 000 011111222233222
Q ss_pred cchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHH
Q 040300 175 HIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYLDVKQR 252 (605)
Q Consensus 175 ~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~LD~~~r 252 (605)
..|.. ++.+.+...........+++.+|+.+..++.+.+|| +||++||+||+.+|+ +|+|| ||++||+..+
T Consensus 223 ~~p~~---tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~ 295 (359)
T 2og2_A 223 AKAAT---VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ 295 (359)
T ss_dssp CCHHH---HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH
T ss_pred cChhh---hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH
Confidence 22211 122211100000000135667888888889999999 999999999999999 99999 9999998754
Q ss_pred HHHHHHHHHhhc-CCcEEEEEec---------CHhHHHhhcCEEEEEe
Q 040300 253 LKAAQVVRSLLR-PNSYVIVVEH---------DLSVLDYLSDFICCLY 290 (605)
Q Consensus 253 ~~~~~~i~~l~~-~g~tvivvsH---------dl~~l~~~~D~i~vl~ 290 (605)
++++.+ .+.|+|++|| .++.+......|..+.
T Consensus 296 ------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig 337 (359)
T 2og2_A 296 ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG 337 (359)
T ss_dssp ------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEE
T ss_pred ------HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEe
Confidence 234443 4899999999 4666666777777773
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-20 Score=183.14 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=120.5
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCC--CcCcHHHHHHhhhcc-CCCCHHHH
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPK--FQSTVRHLLHQKIRD-SYTHPQFV 448 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~--~~~tv~~~~~~~~~~-~~~~~~~~ 448 (605)
.+|++++|+||||||||||+++|+|++.| .++|++|+.... ...++.+........ ...+....
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE-------------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALY 70 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHH
Confidence 35689999999999999999999998765 367888875432 235676654321110 11234456
Q ss_pred HHHHhhcCCchhhccCcCcCChhH----HHHHHHHHHHccCCCEEEEecCCCC-------CCHHHHHHHHHHHHHHHhcC
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGE----LQRVALCLCLGKPADIYLIDEPSAY-------LDSEQRIVAAKVIKRFILHA 517 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe----~QRvaiA~aL~~~p~lllLDEPt~~-------LD~~~~~~l~~~l~~l~~~~ 517 (605)
.++++.+++.+..+.++.++|+|| +||+++|++++.+|.++++||||++ ||+.....+.+.+++...+.
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~ 150 (211)
T 3asz_A 71 LEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER 150 (211)
T ss_dssp HHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 778888888877888999999996 4788999999999999999999999 99999999999998865556
Q ss_pred CcEEEEEecCHHH-H-----------HhhcCEEEEEeC
Q 040300 518 KKTAFVVEHDFIM-A-----------TYLADRVIVYEG 543 (605)
Q Consensus 518 g~tiivvsHD~~~-~-----------~~~adrviv~~g 543 (605)
|.|++.++|++.. + ...||.|+.-.+
T Consensus 151 g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 151 GRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp CCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred CCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 8999999998532 1 145777765443
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-18 Score=201.74 Aligned_cols=142 Identities=15% Similarity=0.192 Sum_probs=96.7
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhh
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQK 437 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~ 437 (605)
++++++|++.+| ++++|+||||||||||||+++++.-... .-+++|+... ...+
T Consensus 662 V~ndvsl~~~~g-----~i~~ItGPNGaGKSTlLr~i~~i~~~aq-----------~g~~vpa~~~---~i~~------- 715 (918)
T 3thx_B 662 VPNNTDLSEDSE-----RVMIITGPNMGGKSSYIKQVALITIMAQ-----------IGSYVPAEEA---TIGI------- 715 (918)
T ss_dssp CCEEEEECTTSC-----CEEEEESCCCHHHHHHHHHHHHHHHHHH-----------HTCCBSSSEE---EEEC-------
T ss_pred ecccccccCCCC-----eEEEEECCCCCchHHHHHHHHHHHHHhh-----------cCccccchhh---hhhH-------
Confidence 456778877666 7899999999999999999986431110 0012222100 0000
Q ss_pred hccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH-HHHHHHHhc
Q 040300 438 IRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAA-KVIKRFILH 516 (605)
Q Consensus 438 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~ 516 (605)
+..++..+++.+...+..+++|+|++|++.|+++ +.+|+|+||||||+|||+..+..+. .+++.+.++
T Consensus 716 ----------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~ 784 (918)
T 3thx_B 716 ----------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRD 784 (918)
T ss_dssp ----------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 0123444555556667789999999999999999 8999999999999999999999887 777777655
Q ss_pred CCcEEEEEecCHHHHHhhcCE
Q 040300 517 AKKTAFVVEHDFIMATYLADR 537 (605)
Q Consensus 517 ~g~tiivvsHD~~~~~~~adr 537 (605)
.|.|+|++|||++++. +||+
T Consensus 785 ~g~tvl~vTH~~el~~-l~~~ 804 (918)
T 3thx_B 785 VKSLTLFVTHYPPVCE-LEKN 804 (918)
T ss_dssp TCCEEEEECSCGGGGG-HHHH
T ss_pred cCCeEEEEeCcHHHHH-HHhh
Confidence 6999999999987763 4554
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-18 Score=170.35 Aligned_cols=156 Identities=17% Similarity=0.187 Sum_probs=90.9
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|.+.+||+++|+||||||||||+++|+|...+..+.+. . ...+-|+...... ....+...+. .. .....
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~---~-~~~~i~~~~~~~~-~~~~i~~~~~-~~---~~~~~-- 88 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGG---L-NGSVIWIDTENTF-RPERIREIAQ-NR---GLDPD-- 88 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC---C-SCEEEEEESSSCC-CHHHHHHHHH-HT---TSCHH--
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCC---C-CCEEEEEECCCCC-CHHHHHHHHH-Hc---CCCHH--
Confidence 56788899999999999999999999996655433210 0 1122333322110 0001111111 10 01111
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHH-HHHHHHHcc-------CCCEEEEecCCCCCCHH--------H----HHHHHH
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQR-VALCLCLGK-------PADIYLIDEPSAYLDSE--------Q----RIVAAK 508 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QR-vaiA~aL~~-------~p~lllLDEPt~~LD~~--------~----~~~l~~ 508 (605)
.+.+.+.+ ...++++++++ +..++.++. +|++++|||||++||+. + ...+++
T Consensus 89 -~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~ 160 (231)
T 4a74_A 89 -EVLKHIYV-------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA 160 (231)
T ss_dssp -HHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHH
T ss_pred -HHhhcEEE-------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHH
Confidence 22222211 22344444433 455555444 99999999999999983 2 236777
Q ss_pred HHHHHHhcCCcEEEEEec----CHHHHHhhcCEEEEEeC
Q 040300 509 VIKRFILHAKKTAFVVEH----DFIMATYLADRVIVYEG 543 (605)
Q Consensus 509 ~l~~l~~~~g~tiivvsH----D~~~~~~~adrviv~~g 543 (605)
.|.++.++.|.|||+||| +-..+.++||++++++.
T Consensus 161 ~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 161 DLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp HHHHHHHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence 788877667999999999 55558899999999984
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-18 Score=198.00 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=92.9
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHH--------HcCCCCCeeeeeccccCcceeEeecCcCCCCCcCc
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRML--------AGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQST 429 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L--------~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~t 429 (605)
++++++|++..| ++++|+||||||||||+|++ .|..-|..+. .++.+
T Consensus 651 v~ndisl~~~~g-----~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~---------~~~~~----------- 705 (934)
T 3thx_A 651 IPNDVYFEKDKQ-----MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA---------EVSIV----------- 705 (934)
T ss_dssp CCEEEEEETTTB-----CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE---------EEECC-----------
T ss_pred ecccceeecCCC-----eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc---------cchHH-----------
Confidence 456777777666 78999999999999999999 3433332211 01110
Q ss_pred HHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHH--ccCCCEEEEecCCCCCCHHHHHHH-
Q 040300 430 VRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCL--GKPADIYLIDEPSAYLDSEQRIVA- 506 (605)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL--~~~p~lllLDEPt~~LD~~~~~~l- 506 (605)
..++..+++.+ .....+|+|+.+++.+|++| +.+|+++||||||+|||+..+..+
T Consensus 706 -------------------d~i~~~ig~~d---~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~ 763 (934)
T 3thx_A 706 -------------------DCILARVGAGD---SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLA 763 (934)
T ss_dssp -------------------SEEEEECC------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHH
T ss_pred -------------------HHHHHhcCchh---hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHH
Confidence 01222333332 22456788888888888887 999999999999999999998888
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE
Q 040300 507 AKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY 541 (605)
Q Consensus 507 ~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~ 541 (605)
+.+++.+.++.|.++|++|||.+++ .+||++..+
T Consensus 764 ~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v 797 (934)
T 3thx_A 764 WAISEYIATKIGAFCMFATHFHELT-ALANQIPTV 797 (934)
T ss_dssp HHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTE
T ss_pred HHHHHHHHhcCCCEEEEEcCcHHHH-HHhccccee
Confidence 6667777555689999999997665 578886443
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-17 Score=163.73 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=102.8
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|.+.+|++++|+||||||||||++.|++...++.|.+ .|+..+. +..+.........+......
T Consensus 18 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v----------~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 81 (235)
T 2w0m_A 18 GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPC----------IYVTTEE------SRDSIIRQAKQFNWDFEEYI 81 (235)
T ss_dssp TSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCE----------EEEESSS------CHHHHHHHHHHTTCCCGGGB
T ss_pred CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeE----------EEEEccc------CHHHHHHHHHHhcchHHHHh
Confidence 4577789999999999999999999998876655443 3333221 11111100000000000000
Q ss_pred -------HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC--EEEEecCCCCC--CHHHHHHHHHHHHHHHhcC
Q 040300 449 -------SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD--IYLIDEPSAYL--DSEQRIVAAKVIKRFILHA 517 (605)
Q Consensus 449 -------~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~--lllLDEPt~~L--D~~~~~~l~~~l~~l~~~~ 517 (605)
+.....++ .. ......|.+++++...+.+...+|+ +++|||||+++ |+..+..+++.|++++++.
T Consensus 82 ~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~ 157 (235)
T 2w0m_A 82 EKKLIIIDALMKEKE-DQ---WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW 157 (235)
T ss_dssp TTTEEEEECCC-----CT---TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT
T ss_pred hCCEEEEeccccccC-ce---eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 00000000 00 0113459999999988888888999 99999999888 9999999999999988777
Q ss_pred CcEEEEEecCH--------HHHHhhcCEEEEEeC
Q 040300 518 KKTAFVVEHDF--------IMATYLADRVIVYEG 543 (605)
Q Consensus 518 g~tiivvsHD~--------~~~~~~adrviv~~g 543 (605)
|.|||+++|+. ..+.++||+|++|+.
T Consensus 158 ~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 158 NFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp TEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred CCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 99999999999 558899999999974
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-18 Score=201.17 Aligned_cols=137 Identities=18% Similarity=0.124 Sum_probs=95.8
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhc
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG 182 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 182 (605)
|++++|+||||||||||||+| |++.+- .. .| .+.||....+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------------aq-iG-----------------~~Vpq~~~~l------ 829 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVM--------------AQ-MG-----------------CYVPAEVCRL------ 829 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHH--------------HT-TT-----------------CCEESSEEEE------
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHH--------------hh-ee-----------------EEeccCcCCC------
Confidence 899999999999999999999 986531 00 00 0112211100
Q ss_pred hhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH-HHHHHHHHH
Q 040300 183 NVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR-LKAAQVVRS 261 (605)
Q Consensus 183 ~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r-~~~~~~i~~ 261 (605)
++.+ .++..+|+.+.+.+..+++|+++++ +++|++++.+|+++||||||+|+|+... ..++.+|+.
T Consensus 830 ~v~d------------~I~~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~ 896 (1022)
T 2o8b_B 830 TPID------------RVFTRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKE 896 (1022)
T ss_dssp CCCS------------BEEEECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred CHHH------------HHHHHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHH
Confidence 0111 0122345555455566778877665 9999999999999999999999999875 557889999
Q ss_pred hhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 262 LLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 262 l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+. |.++|++||+++++..++|++.++.|
T Consensus 897 L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g 927 (1022)
T 2o8b_B 897 LAETIKCRTLFSTHYHSLVEDYSQNVAVRLG 927 (1022)
T ss_dssp HHHTSCCEEEEECCCHHHHHHTSSCSSEEEE
T ss_pred HHhcCCCEEEEEeCCHHHHHHhCCcceeecC
Confidence 9876 89999999999999999999888754
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-19 Score=185.71 Aligned_cols=153 Identities=12% Similarity=0.142 Sum_probs=98.7
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhh--hHHHHHHHHHHHhhcccccccch
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQN--YFTRILEDNLKAIIKPQYVDHIP 177 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~--~~~~~~~~~~~~~~~~q~~~~~~ 177 (605)
+.+|+++||+|+||||||||+++|+|+++|+.|.-. + +...|+ ++.....+++. +...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~--------v----~~v~qd~~~~~~t~~e~~~------~~~~-- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPR--------V----DLVTTDGFLYPNAELQRRN------LMHR-- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCC--------E----EEEEGGGGBCCHHHHHHTT------CTTC--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCe--------E----EEEecCccCCcccHHHHHH------HHHh--
Confidence 578999999999999999999999999999766310 0 000111 11111111110 0000
Q ss_pred hhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 040300 178 KAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQ 257 (605)
Q Consensus 178 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~ 257 (605)
.+ .......+.+.++++.++ ....+..+.+|||||+||+++|++++.+|+|||||||++.+|+.. .
T Consensus 147 ---~g-----~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~ 212 (312)
T 3aez_A 147 ---KG-----FPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----L 212 (312)
T ss_dssp ---TT-----SGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----C
T ss_pred ---cC-----CChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----H
Confidence 00 001112345667788887 555668889999999999999999999999999999999998521 1
Q ss_pred HHHHhhcCCcEEEEEecCHhHHH-hhcCEEEEE
Q 040300 258 VVRSLLRPNSYVIVVEHDLSVLD-YLSDFICCL 289 (605)
Q Consensus 258 ~i~~l~~~g~tvivvsHdl~~l~-~~~D~i~vl 289 (605)
.+.++. -.+|+|+|+.+... .+.+|.+.+
T Consensus 213 ~l~~~~---D~~I~V~a~~~~~~~R~i~R~~~~ 242 (312)
T 3aez_A 213 MVSDLF---DFSLYVDARIEDIEQWYVSRFLAM 242 (312)
T ss_dssp CGGGGC---SEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHhc---CcEEEEECCHHHHHHHHHHHHHHH
Confidence 122222 24688888887653 344554444
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-18 Score=179.69 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=90.3
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
+++|++++|+|+||||||||+++|+|+++|+.|.+.. .|.. .+. .++. ..
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i-----------~~~~--e~~------------~~~~----~~- 217 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI-----------EDTE--EIV------------FKHH----KN- 217 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE-----------ESSC--CCC------------CSSC----SS-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE-----------CCee--ccc------------cccc----hh-
Confidence 4689999999999999999999999999999998742 1110 000 0000 00
Q ss_pred hhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 040300 180 VQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259 (605)
Q Consensus 180 ~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i 259 (605)
.+. ++. . |||+||++||+||.++|+++||||||+. ++.++|
T Consensus 218 ---~i~-~~~--------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l 258 (330)
T 2pt7_A 218 ---YTQ-LFF--------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFY 258 (330)
T ss_dssp ---EEE-EEC--------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHH
T ss_pred ---EEE-EEe--------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHH
Confidence 000 000 0 8999999999999999999999999992 356677
Q ss_pred HHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 260 RSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 260 ~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+.+...+.|+|+++|+++ +...+|++++|.
T Consensus 259 ~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~ 288 (330)
T 2pt7_A 259 NVLCSGHKGTLTTLHAGS-SEEAFIRLANMS 288 (330)
T ss_dssp HHHHTTCCCEEEEEECSS-HHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEEEcccH-HHHHhhhheehh
Confidence 777653458999999999 666899998885
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-20 Score=189.81 Aligned_cols=146 Identities=12% Similarity=0.064 Sum_probs=93.9
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+ ...|.+++ .+.+|++++|+||||||||||+++|+|++ .|+|..- .... ..+|..
T Consensus 106 ~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~----------v~q~-~~lf~~-- 167 (305)
T 2v9p_A 106 NIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF----------ANHK-SHFWLA-- 167 (305)
T ss_dssp TCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG----------GGTT-SGGGGG--
T ss_pred EEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE----------ecCc-cccccc--
Confidence 3444564 12355555 45799999999999999999999999998 7887420 0000 000100
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
.+ . ..++...+ ... ..+.+.++.+ |.+.++ ...|||||||| ||||+++|+|||
T Consensus 168 --ti--~--~~ni~~~~------------~~~--~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl- 220 (305)
T 2v9p_A 168 --SL--A--DTRAALVD------------DAT--HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV- 220 (305)
T ss_dssp --GG--T--TCSCEEEE------------EEC--HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE-
T ss_pred --cH--H--HHhhccCc------------ccc--HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE-
Confidence 00 0 00000000 000 1234445543 444444 78999999999 999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+||+.++..+.. ++|++..+ ..||+| +|..
T Consensus 221 ---Ts~LD~~~~~~i~~--------------ltH~~~~~-~~aD~i-vl~~ 252 (305)
T 2v9p_A 221 ---TSNIDVQAEDRYLY--------------LHSRVQTF-RFEQPC-TDES 252 (305)
T ss_dssp ---EESSCSTTCGGGGG--------------GTTTEEEE-ECCCCC-CCC-
T ss_pred ---ECCCCHHHHHHHHH--------------HhCCHHHH-HhCCEE-EEeC
Confidence 99999987766541 28998876 579999 9864
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-18 Score=185.40 Aligned_cols=167 Identities=16% Similarity=0.122 Sum_probs=115.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cc---ccC------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DV---EIP------------ 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~---~~~------------ 411 (605)
++.|....++++++ |.+.+| |+++|+||||||||||+++|+|+.+|+.|.+. +. +..
T Consensus 138 ~~~~~tg~~vld~v-l~i~~G-----q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l 211 (438)
T 2dpy_A 138 EHVLDTGVRAINAL-LTVGRG-----QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGR 211 (438)
T ss_dssp CSBCCCSCHHHHHH-SCCBTT-----CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHH
T ss_pred ceecCCCceEEeee-EEecCC-----CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcccccc
Confidence 56665333467888 888887 78999999999999999999999999999764 22 111
Q ss_pred cceeEeecCcC-CCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 412 EFNVSYKPQKI-SPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 412 ~~~i~y~~q~~-~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
...++|++|.. ......++.++...... +..+ ..-.+..+++ .+..||+|| |||+|| +.+|++
T Consensus 212 ~r~i~~v~q~~~~~~~~~~v~~~~~~~ae-------~~~~--~~~~v~~~ld-~l~~lS~g~-qrvslA---l~~p~~-- 275 (438)
T 2dpy_A 212 ARSVVIAAPADVSPLLRMQGAAYATRIAE-------DFRD--RGQHVLLIMD-SLTRYAMAQ-REIALA---IGEPPA-- 275 (438)
T ss_dssp HTEEEEEECTTSCHHHHHHHHHHHHHHHH-------HHHT--TTCEEEEEEE-CHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHH-------HHHh--CCCCHHHHHH-hHHHHHHHH-HHHHHH---hCCCcc--
Confidence 13589999853 22234466555432100 0000 0011112222 378899999 999999 788888
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHh---cCCc-----EEEEEecCHHHHHhhcCEEEEEeC
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFIL---HAKK-----TAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~---~~g~-----tiivvsHD~~~~~~~adrviv~~g 543 (605)
|+|||+..+..+.++++++.+ +.|. ||+++|||++ ..+||+++++.+
T Consensus 276 ----t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~d 330 (438)
T 2dpy_A 276 ----TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILD 330 (438)
T ss_dssp ----SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSS
T ss_pred ----cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeC
Confidence 999999999999999999754 2364 9999999996 345566555543
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-19 Score=179.88 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=82.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCC-hh-hhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh-hhh
Q 040300 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPD-WQ-EILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQ 181 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~-~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~ 181 (605)
.++|+||||||||||+|+|+|+..|+.|++..... .. .......+..+ |.....+. .+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~------------------q~~~~~~~ltv~ 65 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVI------------------EEGGVKMKLTVI 65 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESC------------------C----CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEe------------------ecCCCcCCceEE
Confidence 58999999999999999999999999998742100 00 00000001111 11000000 000
Q ss_pred chhh--hhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 040300 182 GNVG--QVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259 (605)
Q Consensus 182 ~~v~--~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i 259 (605)
.++. .........+.+.+++. ....++.+.+|||||+||++||||++. +|++|||+++||+.. .+++
T Consensus 66 d~~~~g~~~~~~~~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l 134 (270)
T 3sop_A 66 DTPGFGDQINNENCWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFM 134 (270)
T ss_dssp CCCC--CCSBCTTCSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHH
T ss_pred echhhhhhcccHHHHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHH
Confidence 0100 00011111122333332 456677888999999999999999886 999999999999976 4566
Q ss_pred HHhhcCCcEEEEEecCHhHH
Q 040300 260 RSLLRPNSYVIVVEHDLSVL 279 (605)
Q Consensus 260 ~~l~~~g~tvivvsHdl~~l 279 (605)
+.|.+. .+||+|.|..+.+
T Consensus 135 ~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 135 KHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHTT-SEEEEEETTGGGS
T ss_pred HHHHhc-CcEEEEEeccccC
Confidence 666665 8899999886544
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-17 Score=164.95 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=104.6
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee-cccc-CcceeEeecCcCCCCCcCcHHHHHH--hhhccCCCCH
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS-DVEI-PEFNVSYKPQKISPKFQSTVRHLLH--QKIRDSYTHP 445 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~-~~~~-~~~~i~y~~q~~~~~~~~tv~~~~~--~~~~~~~~~~ 445 (605)
.+.+|++++|+||||||||||++.|++.+.. |.+. +... ....+.|+..+. +..++.. ...... ...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~~g~~~~~~~~v~~~~~e~------~~~~~~~r~~~~g~~-~~~ 96 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG--GPDLLEVGELPTGPVIYLPAED------PPTAIHHRLHALGAH-LSA 96 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT--CCCTTCCCCCCCCCEEEEESSS------CHHHHHHHHHHHHTT-SCH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcCCCccCCCccEEEEECCC------CHHHHHHHHHHHHhh-cCh
Confidence 4778899999999999999999999986542 3321 1111 123466765432 2222111 111111 123
Q ss_pred HHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC--CCCHHHH---HHHHHHHHHHHhcCCcE
Q 040300 446 QFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA--YLDSEQR---IVAAKVIKRFILHAKKT 520 (605)
Q Consensus 446 ~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~--~LD~~~~---~~l~~~l~~l~~~~g~t 520 (605)
....++++.+.+.+..++++..||+||+|++ ++++.+|+++||||||+ ++|.... ..+++.|++++++.|.|
T Consensus 97 ~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t 173 (279)
T 1nlf_A 97 EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS 173 (279)
T ss_dssp HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE
Confidence 4456678888888888899999999998865 57888999999999999 9997443 78888888887667999
Q ss_pred EEEEecCHHHHH
Q 040300 521 AFVVEHDFIMAT 532 (605)
Q Consensus 521 iivvsHD~~~~~ 532 (605)
||+++|+.....
T Consensus 174 vi~i~H~~~~~~ 185 (279)
T 1nlf_A 174 IVFLHHASKGAA 185 (279)
T ss_dssp EEEEEEC-----
T ss_pred EEEEecCCCccc
Confidence 999999987654
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-18 Score=172.58 Aligned_cols=123 Identities=18% Similarity=0.186 Sum_probs=87.6
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCCCC-eeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHH
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLKPD-SVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSD 450 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 450 (605)
.+|++++|+||||||||||+++|+|+++|+ +|.+.. ....+.|++|..... +..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~---~g~~i~~~~~~~~~~------------v~q---------- 77 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT---IEDPIEYVFKHKKSI------------VNQ---------- 77 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE---EESSCCSCCCCSSSE------------EEE----------
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE---cCCcceeecCCccee------------eeH----------
Confidence 445899999999999999999999999997 888741 112244554432100 000
Q ss_pred HHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q 040300 451 VMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIM 530 (605)
Q Consensus 451 ~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~ 530 (605)
..++++. .+| |++||++|.++|+++|||||| |+++...+ ++.. +.|.+|++++|+.+
T Consensus 78 --~~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~--~~g~~vl~t~H~~~- 134 (261)
T 2eyu_A 78 --REVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA---LRAA--ETGHLVFGTLHTNT- 134 (261)
T ss_dssp --EEBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHH--HTTCEEEEEECCSS-
T ss_pred --HHhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHH--ccCCEEEEEeCcch-
Confidence 0223221 222 899999999999999999999 99876544 4432 35899999999977
Q ss_pred HHhhcCEEEEEe
Q 040300 531 ATYLADRVIVYE 542 (605)
Q Consensus 531 ~~~~adrviv~~ 542 (605)
+...+||+++|.
T Consensus 135 ~~~~~dri~~l~ 146 (261)
T 2eyu_A 135 AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHhhhc
Confidence 567889988775
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-17 Score=192.56 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=92.0
Q ss_pred eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcc
Q 040300 92 FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKP 170 (605)
Q Consensus 92 f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 170 (605)
|.+++++ .+.+|++++|+||||||||||||++++.... .. .| .+.|
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~---------------aq-~g-----------------~~vp 707 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM---------------AQ-IG-----------------SYVP 707 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH---------------HH-HT-----------------CCBS
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH---------------hh-cC-----------------cccc
Confidence 3344443 2468999999999999999999999764210 00 00 0001
Q ss_pred cccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 040300 171 QYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK 250 (605)
Q Consensus 171 q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~ 250 (605)
.....++ . ++.++..+|+.+.+.+..+++|+|++|++.|+++ +.+|+++||||||+|||+.
T Consensus 708 a~~~~i~-----~-------------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 708 AEEATIG-----I-------------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp SSEEEEE-----C-------------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH
T ss_pred chhhhhh-----H-------------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH
Confidence 1000000 0 0123344566666777889999999999999999 8999999999999999999
Q ss_pred HHHHHH-HHHHHhhc-CCcEEEEEecCHhHHHhhcC
Q 040300 251 QRLKAA-QVVRSLLR-PNSYVIVVEHDLSVLDYLSD 284 (605)
Q Consensus 251 ~r~~~~-~~i~~l~~-~g~tvivvsHdl~~l~~~~D 284 (605)
.+..++ .+++.+.+ .|.+||++|||+++.. ++|
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~ 803 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEK 803 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHh
Confidence 998887 67787765 5999999999987664 444
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-19 Score=178.07 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=97.8
Q ss_pred eecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhh---hhhhcc--chhhhhHHHHHHHHHHHh
Q 040300 94 LHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI---LTYFRG--SELQNYFTRILEDNLKAI 167 (605)
Q Consensus 94 l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~---~~~~~g--~~l~~~~~~~~~~~~~~~ 167 (605)
|.+++ .+.+|++++|+||||||||||+++|+|++ | |.+....+.... .....+ ..+++.. .+.... .
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~-~- 85 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKT--IFEDKL-K- 85 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHH--HHHHHH-H-
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHH--HHHHhh-h-
Confidence 44444 34789999999999999999999999998 6 776421110000 000011 1112110 111100 0
Q ss_pred hcccccccchhhhhchhhh-hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHH-----HHHHccCCCEEEEe
Q 040300 168 IKPQYVDHIPKAVQGNVGQ-VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAI-----AVVAVQNAEIYMFD 241 (605)
Q Consensus 168 ~~~q~~~~~~~~~~~~v~~-~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaI-----A~aL~~~p~vlllD 241 (605)
...++.. +++.. .+... ...++++++...+. +++ .+|||||+||++| |++++.+|++++||
T Consensus 86 -~~~~l~~------~~~~~~~~g~~--~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Ld 152 (218)
T 1z6g_A 86 -NEDFLEY------DNYANNFYGTL--KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLL 152 (218)
T ss_dssp -TTCEEEE------EEETTEEEEEE--HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHH
T ss_pred -ccchhhh------hhcccccCCCc--HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHH
Confidence 0011110 00100 01001 12355566654432 333 5799999999999 89999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhc-------CCcEEEEEecCHhHHHhhcCEE
Q 040300 242 EPSSYLDVKQRLKAAQVVRSLLR-------PNSYVIVVEHDLSVLDYLSDFI 286 (605)
Q Consensus 242 EPts~LD~~~r~~~~~~i~~l~~-------~g~tvivvsHdl~~l~~~~D~i 286 (605)
|||+.+|..+...+.+.|.++.+ .....|+|+||++++...++++
T Consensus 153 e~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 153 SRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHH
Confidence 99999998877777777766543 2345666667766666555444
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-17 Score=167.50 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=101.1
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHh
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
..+++++|++.+| +++||+||||||||||+++|+|++ |.+... .....++|++|+. .....|+.++...
T Consensus 13 ~~l~~isl~i~~g-----~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-~~~~~i~~v~~d~-~~~~l~~~~~~~~ 81 (245)
T 2jeo_A 13 LGTENLYFQSMRP-----FLIGVSGGTASGKSTVCEKIMELL----GQNEVE-QRQRKVVILSQDR-FYKVLTAEQKAKA 81 (245)
T ss_dssp ----------CCS-----EEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-GGGCSEEEEEGGG-GBCCCCHHHHHHH
T ss_pred eeecceeccCCCC-----EEEEEECCCCCCHHHHHHHHHHHh----chhccc-ccCCceEEEeCCc-CccccCHhHhhhh
Confidence 3688999988887 689999999999999999999976 332100 1134588999984 3345688776532
Q ss_pred hhcc-CCC-----CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040300 437 KIRD-SYT-----HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVI 510 (605)
Q Consensus 437 ~~~~-~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l 510 (605)
.... .+. +.....+.++.+ .+..+.++..||+||+||+++ ++++.+|+++|||||...+|.. +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l 150 (245)
T 2jeo_A 82 LKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------I 150 (245)
T ss_dssp HTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------H
T ss_pred hccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------H
Confidence 2111 111 122233444443 455677889999999999988 5888899999999999888863 2
Q ss_pred HHHHhcCCcEEEEEecC-HHHHHhhcCEE
Q 040300 511 KRFILHAKKTAFVVEHD-FIMATYLADRV 538 (605)
Q Consensus 511 ~~l~~~~g~tiivvsHD-~~~~~~~adrv 538 (605)
.++ .+.+|+++||+ ......+++++
T Consensus 151 ~~~---~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 151 RDM---FHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp HTT---CSEEEEEECCHHHHHHHHHHHHT
T ss_pred HHh---cCeEEEEECCHHHHHHHHHHHHH
Confidence 332 37899999997 44445555544
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-17 Score=189.39 Aligned_cols=130 Identities=17% Similarity=0.195 Sum_probs=93.9
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-CCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHh
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-PDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
++++++|+ |++++|+||||||||||+|+|+|+.. |+.|.+. ......+++++|- ....++.+++
T Consensus 568 vl~disl~--------g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v--pa~~~~i~~v~~i---~~~~~~~d~l-- 632 (765)
T 1ewq_A 568 VPNDLEMA--------HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV--PAEEAHLPLFDGI---YTRIGASDDL-- 632 (765)
T ss_dssp CCEEEEES--------SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB--SSSEEEECCCSEE---EEECCC------
T ss_pred EeeeccCC--------CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee--ehhccceeeHHHh---hccCCHHHHH--
Confidence 45666666 47999999999999999999999874 6667542 1112345665541 1112222221
Q ss_pred hhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHH--ccCCCEEEEecC---CCCCCHHHH-HHHHHHH
Q 040300 437 KIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCL--GKPADIYLIDEP---SAYLDSEQR-IVAAKVI 510 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL--~~~p~lllLDEP---t~~LD~~~~-~~l~~~l 510 (605)
...+|+|++|++.+|++| +.+|+++||||| |++||..+. ..+.+.|
T Consensus 633 ----------------------------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L 684 (765)
T 1ewq_A 633 ----------------------------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL 684 (765)
T ss_dssp ------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred ----------------------------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHH
Confidence 124799999999999999 999999999999 999999876 4566666
Q ss_pred HHHHhcCCcEEEEEecCHHHHHhhc
Q 040300 511 KRFILHAKKTAFVVEHDFIMATYLA 535 (605)
Q Consensus 511 ~~l~~~~g~tiivvsHD~~~~~~~a 535 (605)
.+ .|.|+|++|||.+++. ++
T Consensus 685 ~~----~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 685 HE----RRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HH----HTCEEEEECCCHHHHT-CC
T ss_pred Hh----CCCEEEEEeCCHHHHH-hh
Confidence 55 3899999999988764 44
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-17 Score=193.09 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=59.6
Q ss_pred cCCCCChHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEE
Q 040300 213 NVGDLSGGELQRFAIAVVA--VQNAEIYMFDEPSSYLDVKQRLKA-AQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL--~~~p~vlllDEPts~LD~~~r~~~-~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
....+|+|+.++..+|++| +.+|+++||||||+|||+..+..+ +.+++.+.+ .|.++|++||+.++. .++|++..
T Consensus 718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~ 796 (934)
T 3thx_A 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPT 796 (934)
T ss_dssp -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTT
T ss_pred HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccce
Confidence 3456788888888888888 999999999999999999988887 567777775 499999999997655 57888655
Q ss_pred E
Q 040300 289 L 289 (605)
Q Consensus 289 l 289 (605)
+
T Consensus 797 v 797 (934)
T 3thx_A 797 V 797 (934)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.1e-19 Score=186.07 Aligned_cols=169 Identities=14% Similarity=0.109 Sum_probs=110.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc---cC-----------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE---IP-----------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~---~~-----------~ 412 (605)
+..|....++++++ |.+..| |+++|+||||||||||+++|+|+.+|+.|.+. +.. .. .
T Consensus 52 ~~~~~tg~~ald~l-l~i~~G-----q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~ 125 (347)
T 2obl_A 52 DQPFILGVRAIDGL-LTCGIG-----QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLS 125 (347)
T ss_dssp CSEECCSCHHHHHH-SCEETT-----CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHT
T ss_pred ceecCCCCEEEEee-eeecCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhh
Confidence 55665333467888 888887 79999999999999999999999999998763 111 00 0
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
..+.+++|... +..+.+..... .....+.....+-. -.+-..+..||+|| |||++| +.+|++
T Consensus 126 ~~v~~~~~~~~-----~~~~r~~~~~~-----~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 126 KCVLVVTTSDR-----PALERMKAAFT-----ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp TEEEEEECTTS-----CHHHHHHHHHH-----HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred ceEEEEECCCC-----CHHHHHHHHHH-----HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 11333333211 11111100000 00001111111100 00115689999999 999999 577777
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFIL-HAKK-----TAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~-~~g~-----tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|+|||+..+..+.++++++.. +.|. ||+++|||++ ..+||+++++.++.
T Consensus 189 ---t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~ 243 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGH 243 (347)
T ss_dssp ---BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEE
T ss_pred ---ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcE
Confidence 999999999999999999754 4577 8999999998 67899988876543
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=156.99 Aligned_cols=158 Identities=14% Similarity=0.068 Sum_probs=100.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 180 (605)
.+|++++|+|+||||||||++.|++...++.|.+. |.+.+.. ...+..........++....
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~-----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~----- 82 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI-----------YVTTEES--RDSIIRQAKQFNWDFEEYIE----- 82 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE-----------EEESSSC--HHHHHHHHHHTTCCCGGGBT-----
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE-----------EEEcccC--HHHHHHHHHHhcchHHHHhh-----
Confidence 58999999999999999999999998877666542 1111110 00000000001111111000
Q ss_pred hchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCC--CHHHHHHHH
Q 040300 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYL--DVKQRLKAA 256 (605)
Q Consensus 181 ~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~L--D~~~r~~~~ 256 (605)
..+ ..++.. ...++ ... .....|.+++++...+.+...+|+ ++++||||+.+ |+..+..++
T Consensus 83 -~~~-~~~~~~---------~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~ 147 (235)
T 2w0m_A 83 -KKL-IIIDAL---------MKEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKIS 147 (235)
T ss_dssp -TTE-EEEECC---------C-----CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHH
T ss_pred -CCE-EEEecc---------ccccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHH
Confidence 000 000000 00001 111 123459999999988888888999 99999999888 998888999
Q ss_pred HHHHHhhc-CCcEEEEEecCH--------hHHHhhcCEEEEEeC
Q 040300 257 QVVRSLLR-PNSYVIVVEHDL--------SVLDYLSDFICCLYG 291 (605)
Q Consensus 257 ~~i~~l~~-~g~tvivvsHdl--------~~l~~~~D~i~vl~g 291 (605)
+.|+++++ .|.|||+++|+. ..+..+||+|++|+.
T Consensus 148 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 148 YYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp HHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 99999865 599999999999 558889999999964
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-18 Score=178.57 Aligned_cols=182 Identities=13% Similarity=0.129 Sum_probs=107.5
Q ss_pred CceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCC-ChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP-DWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~-~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
++++.|+.....++.+-.+.+||++||+|+||||||||+++|+|...|+.|.+.... ...++. .+.+. ++. ..+
T Consensus 50 ~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~-~~i~~-~~~---~~~ 124 (347)
T 2obl_A 50 VIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVN-EFLAL-LPQ---STL 124 (347)
T ss_dssp CCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHH-HHHTT-SCH---HHH
T ss_pred ccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHH-HHHHh-hhh---hhh
Confidence 455677633234555533579999999999999999999999999999999774210 111110 01111 000 000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCch-hhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQ-VIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~-~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
.. ...+..+. ..+.. ..+.. ....-...+.+...+-.- .+-+.+..||+|| ||+++| +.+|++
T Consensus 125 ~~--~v~~~~~~--~~~~~--~r~~~----~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 125 SK--CVLVVTTS--DRPAL--ERMKA----AFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp TT--EEEEEECT--TSCHH--HHHHH----HHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred hc--eEEEEECC--CCCHH--HHHHH----HHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 00 00000000 00000 00000 000000111111111110 0115788999999 999999 688877
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhc--CCc-----EEEEEecCHhHHHhhcCEEEEEe
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLLR--PNS-----YVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~~--~g~-----tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
|++||+..+..+.++++++.+ .|. ||+++|||++ +.+||++.++.
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~ 240 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSIL 240 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHC
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEee
Confidence 999999999999999999974 477 8999999998 77889887774
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-18 Score=163.01 Aligned_cols=147 Identities=20% Similarity=0.204 Sum_probs=92.8
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc-----cCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHH
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE-----IPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQ 446 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~-----~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 446 (605)
||+++|+||||||||||+++|+|+++ ++| +. +.. .....++|++|.... + +.++. .. .+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g----~-~~~l~-~~--~~~~~- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG----T-RGPLS-RV--GLEPP- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTS----C-EEEEE-EC--CCCCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEeccc----c-eehhh-cc--cccCC-
Confidence 57899999999999999999999998 777 53 111 113457888887421 1 01110 00 00000
Q ss_pred HHHHHHhhcCCchhhccCcCcCChhHHHHH-HHHH---HHccCCCEEEEec--CCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 040300 447 FVSDVMKPLLIEQLMDQEVVNLSGGELQRV-ALCL---CLGKPADIYLIDE--PSAYLDSEQRIVAAKVIKRFILHAKKT 520 (605)
Q Consensus 447 ~~~~~l~~l~l~~~~~~~~~~LSGGe~QRv-aiA~---aL~~~p~lllLDE--Pt~~LD~~~~~~l~~~l~~l~~~~g~t 520 (605)
.........++...||+||++++ ++++ |++.+|++||||| |+..+|......+ +++..+...+
T Consensus 70 -------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l----~~~l~~~~~~ 138 (189)
T 2i3b_A 70 -------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV----RQTLSTPGTI 138 (189)
T ss_dssp -------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH----HHHHHCSSCC
T ss_pred -------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH----HHHHhCCCcE
Confidence 00001134556678999999998 4454 6889999999999 8999999755544 4444433333
Q ss_pred EE---EEecCH--HHHHhhcC----EEEEEe
Q 040300 521 AF---VVEHDF--IMATYLAD----RVIVYE 542 (605)
Q Consensus 521 ii---vvsHD~--~~~~~~ad----rviv~~ 542 (605)
++ .||||. .+++++++ +|+.+.
T Consensus 139 ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 139 ILGTIPVPKGKPLALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp EEEECCCCCSSCCTTHHHHHTTCCSEEEECC
T ss_pred EEEEeecCCCCchHHHHHHeecCCcEEEEeC
Confidence 42 445986 66777665 555554
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-17 Score=172.91 Aligned_cols=141 Identities=12% Similarity=0.055 Sum_probs=94.1
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------------cceeEeecCcCCCCCcCcHHHHHHhh
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------------EFNVSYKPQKISPKFQSTVRHLLHQK 437 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------------~~~i~y~~q~~~~~~~~tv~~~~~~~ 437 (605)
+|++++|+||||||||||+++|+|+++|++|++. +.+.. ...++|++|........++.+++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999875 11110 12488999986554445676665421
Q ss_pred hccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 040300 438 IRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD--IYLIDEPSAYLDSEQRIVAAKVIKRFIL 515 (605)
Q Consensus 438 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~--lllLDEPt~~LD~~~~~~l~~~l~~l~~ 515 (605)
...... ..+++..|..+..++.+.+|| +||++|||||+.+|+ +|.|| |+++. .+.+.++++.+
T Consensus 181 ~~~~~d-----~~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lLvLD-a~t~~------~~~~~~~~~~~ 245 (304)
T 1rj9_A 181 KARGYD-----LLFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWLVLD-AVTGQ------NGLEQAKKFHE 245 (304)
T ss_dssp HHHTCS-----EEEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEEEEE-TTBCT------HHHHHHHHHHH
T ss_pred HhCCCC-----EEEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEEEEc-HHHHH------HHHHHHHHHHH
Confidence 111110 012333444333333344454 899999999999999 55566 55554 44555666655
Q ss_pred cCCcEEEEEecCH
Q 040300 516 HAKKTAFVVEHDF 528 (605)
Q Consensus 516 ~~g~tiivvsHD~ 528 (605)
..+.|+|++||+.
T Consensus 246 ~~~~t~iivTh~d 258 (304)
T 1rj9_A 246 AVGLTGVIVTKLD 258 (304)
T ss_dssp HHCCSEEEEECTT
T ss_pred HcCCcEEEEECCc
Confidence 4589999999984
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-16 Score=154.28 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=43.0
Q ss_pred cCCCEEEEeCCCCCCCHH--------H----HHHHHHHHHHhhcC-CcEEEEEec----CHhHHHhhcCEEEEEeC
Q 040300 233 QNAEIYMFDEPSSYLDVK--------Q----RLKAAQVVRSLLRP-NSYVIVVEH----DLSVLDYLSDFICCLYG 291 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~--------~----r~~~~~~i~~l~~~-g~tvivvsH----dl~~l~~~~D~i~vl~g 291 (605)
.+|+++++||||+.||+. + ...+++.|.+++++ |.|||+||| +-..+.++||++++|+.
T Consensus 124 ~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 124 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp SCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred CceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence 499999999999999983 2 22567777777654 999999999 55559999999999974
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-16 Score=146.12 Aligned_cols=79 Identities=30% Similarity=0.346 Sum_probs=69.5
Q ss_pred hccCcCcCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcC
Q 040300 461 MDQEVVNLSGGELQRVALCLCLG----KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLAD 536 (605)
Q Consensus 461 ~~~~~~~LSGGe~QRvaiA~aL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~ad 536 (605)
..+++..||||||||++||++|+ .+|++|||||||++||+.++..+.++|+++.. +.++|+|||+.... .+||
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~~-~~ad 134 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVMM-ANAD 134 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHHH-TTCS
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHHH-HhCC
Confidence 45678999999999999999997 45799999999999999999999999999743 57899999997665 6799
Q ss_pred EEEEEe
Q 040300 537 RVIVYE 542 (605)
Q Consensus 537 rviv~~ 542 (605)
+++.+.
T Consensus 135 ~i~~v~ 140 (173)
T 3kta_B 135 KIIGVS 140 (173)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999764
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=147.80 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=97.9
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|.+.+|++++|+||||+|||||++.|++ .+ .+ ++.|+..+.. .+...+... ........
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~----------~v~~i~~~~~----~~~~~~~~~-~~~~~~~~--- 73 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GK----------KVAYVDTEGG----FSPERLVQM-AETRGLNP--- 73 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CS----------EEEEEESSCC----CCHHHHHHH-HHTTTCCH---
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CC----------cEEEEECCCC----CCHHHHHHH-HHhcCCCh---
Confidence 5678889999999999999999999999 21 11 2445543321 112111110 00101111
Q ss_pred HHHHhhcCCchhhccCcCcCChhH--HHHHHHHHHHccC-CCEEEEecCCCCCCHHH--------HHHHHHHHHHHHhcC
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGE--LQRVALCLCLGKP-ADIYLIDEPSAYLDSEQ--------RIVAAKVIKRFILHA 517 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe--~QRvaiA~aL~~~-p~lllLDEPt~~LD~~~--------~~~l~~~l~~l~~~~ 517 (605)
.++++.+ .+.++|+++ +|+++.+++++.+ |+++|+||||+.+|... ...+++.|++++++.
T Consensus 74 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~ 145 (220)
T 2cvh_A 74 EEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKH 145 (220)
T ss_dssp HHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHc
Confidence 1222221 344566665 4678888899886 99999999999999732 244566688877767
Q ss_pred CcEEEEEecCHH-------------HHHhhcCEEEEEeCC
Q 040300 518 KKTAFVVEHDFI-------------MATYLADRVIVYEGQ 544 (605)
Q Consensus 518 g~tiivvsHD~~-------------~~~~~adrviv~~g~ 544 (605)
+.|+|+++|... .+.++||++++++..
T Consensus 146 ~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 146 NIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 899999999865 577899999999743
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.61 E-value=8e-17 Score=174.88 Aligned_cols=177 Identities=17% Similarity=0.181 Sum_probs=106.0
Q ss_pred CCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccc---hhhhhHH
Q 040300 81 KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGS---ELQNYFT 157 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~---~l~~~~~ 157 (605)
+++++.|+.....|+++-.+.+|++++|+|+||||||||+++|+|+.+|+.|.+.. .|. ++..+..
T Consensus 135 ~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~-----------~G~r~~ev~~~~~ 203 (438)
T 2dpy_A 135 TPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGL-----------IGERGREVKDFIE 203 (438)
T ss_dssp CCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE-----------ESCCHHHHHHHHH
T ss_pred eccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEE-----------eceecHHHHHHHH
Confidence 35566776322245555345799999999999999999999999999999998742 222 2221110
Q ss_pred HHH-HHHHH--HhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcC--CchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 158 RIL-EDNLK--AIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLD--LNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 158 ~~~-~~~~~--~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~--L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
... ...+. ..+.+|.-. +....-++.+.+. ...++...-+ ...+++ .+..||+|| ||++|| +
T Consensus 204 ~~~~~~~l~r~i~~v~q~~~--~~~~~~~v~~~~~------~~ae~~~~~~~~v~~~ld-~l~~lS~g~-qrvslA---l 270 (438)
T 2dpy_A 204 NILGPDGRARSVVIAAPADV--SPLLRMQGAAYAT------RIAEDFRDRGQHVLLIMD-SLTRYAMAQ-REIALA---I 270 (438)
T ss_dssp TTTHHHHHHTEEEEEECTTS--CHHHHHHHHHHHH------HHHHHHHTTTCEEEEEEE-CHHHHHHHH-HHHHHH---T
T ss_pred hhccccccCceEEEEECCCC--CHHHHHHHHHHHH------HHHHHHHhCCCCHHHHHH-hHHHHHHHH-HHHHHH---h
Confidence 000 00111 111222100 0000001111110 0111111111 112333 377899999 999999 8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc---C-Cc-----EEEEEecCHhHHHhhcCEEEEE
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR---P-NS-----YVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~---~-g~-----tvivvsHdl~~l~~~~D~i~vl 289 (605)
.+|++ |++||+..+..+.+++.++.+ . |. ||+++|||++ +.+||++++|
T Consensus 271 ~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l 328 (438)
T 2dpy_A 271 GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAI 328 (438)
T ss_dssp TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHH
T ss_pred CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEE
Confidence 88888 999999999999999999876 3 64 9999999995 3444444333
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=142.75 Aligned_cols=82 Identities=24% Similarity=0.263 Sum_probs=71.7
Q ss_pred hhcccCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcC
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQ----NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSD 284 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~----~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D 284 (605)
...+.+..||||||||++||++|+. +|++|||||||++||+..+..+.++|+++.+ +.++|+|||+...+ ..||
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~~-~~ad 134 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVMM-ANAD 134 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHHH-TTCS
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHHH-HhCC
Confidence 3457789999999999999999974 4699999999999999999999999999875 57899999998765 5899
Q ss_pred EEEEEeCc
Q 040300 285 FICCLYGK 292 (605)
Q Consensus 285 ~i~vl~g~ 292 (605)
+++.+...
T Consensus 135 ~i~~v~~~ 142 (173)
T 3kta_B 135 KIIGVSMR 142 (173)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99988643
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.2e-17 Score=163.76 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=89.1
Q ss_pred eecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCC-CceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccc
Q 040300 94 LHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPN-LGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQY 172 (605)
Q Consensus 94 l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~ 172 (605)
|.+++ +.+|++++|+||||||||||+++|+|+++|+ .|++.. .|..+... ++.
T Consensus 17 l~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~-----------~g~~i~~~--------------~~~ 70 (261)
T 2eyu_A 17 VLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT-----------IEDPIEYV--------------FKH 70 (261)
T ss_dssp HHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE-----------EESSCCSC--------------CCC
T ss_pred HHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE-----------cCCcceee--------------cCC
Confidence 44455 5799999999999999999999999999997 898741 11111000 000
Q ss_pred cccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 040300 173 VDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252 (605)
Q Consensus 173 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r 252 (605)
+.. ++.. ..+|++. ..| |++||++|.++|+++|+|||| |+.+.
T Consensus 71 ----~~~-------~v~q-----------~~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 71 ----KKS-------IVNQ-----------REVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp ----SSS-------EEEE-----------EEBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred ----cce-------eeeH-----------HHhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 000 0000 0233321 122 899999999999999999999 98876
Q ss_pred HHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 253 LKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 253 ~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
..+ ++.. ..|.+|++++|+.+ +...+|++++|.
T Consensus 114 ~~~---l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 114 ETA---LRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp HHH---HHHH-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred HHH---HHHH-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 543 4433 45999999999988 556789887774
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.1e-16 Score=157.05 Aligned_cols=150 Identities=14% Similarity=0.148 Sum_probs=94.8
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCCh--hhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDW--QEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK 178 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~ 178 (605)
.+|++++|+|+||||||||++.|++.+.. |.+...... .....++...+....+ ...+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~~g~~~~~~~~v~~~~~e~~~~~~----~~r~~~------------ 89 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAG--GPDLLEVGELPTGPVIYLPAEDPPTAI----HHRLHA------------ 89 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHT--CCCTTCCCCCCCCCEEEEESSSCHHHH----HHHHHH------------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcCCCccCCCccEEEEECCCCHHHH----HHHHHH------------
Confidence 48999999999999999999999986542 322100000 0000111111110000 000000
Q ss_pred hhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHH---HH
Q 040300 179 AVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSS--YLDVKQ---RL 253 (605)
Q Consensus 179 ~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts--~LD~~~---r~ 253 (605)
+...+. .....++++.+++.+..++++..||+||+|++ ++++.+|+++|+||||+ ++|... ..
T Consensus 90 -----~g~~~~----~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 90 -----LGAHLS----AEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp -----HHTTSC----HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred -----HHhhcC----hhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 000000 12345667888888888899999999998865 57888999999999999 899743 36
Q ss_pred HHHHHHHHhhc-CCcEEEEEecCHhHHH
Q 040300 254 KAAQVVRSLLR-PNSYVIVVEHDLSVLD 280 (605)
Q Consensus 254 ~~~~~i~~l~~-~g~tvivvsHdl~~l~ 280 (605)
.+++.|+++++ .|.|||+++|+.....
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 77888888864 4999999999987654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-16 Score=181.97 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=91.2
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-CeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHh
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-DSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
++++++|+ .+| ++++|+||||||||||+|+|+|+..+ ..|.. .......+++++|
T Consensus 597 vlndisl~-~~g-----~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~--vpa~~~~i~~~~~---------------- 652 (800)
T 1wb9_A 597 IANPLNLS-PQR-----RMLIITGPNMGGKSTYMRQTALIALMAYIGSY--VPAQKVEIGPIDR---------------- 652 (800)
T ss_dssp CCEEEEEC-SSS-----CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC--BSSSEEEECCCCE----------------
T ss_pred eeeccccc-CCC-----cEEEEECCCCCChHHHHHHHHHHHHHHhcCcc--cchhcccceeHHH----------------
Confidence 46777776 444 79999999999999999999997422 12211 0001112333322
Q ss_pred hhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH-HHHHHHHHh
Q 040300 437 KIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVA-AKVIKRFIL 515 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~l~~ 515 (605)
++..++..+......+++|++++ +++.+..++.+|+++|||||++|+|+.....+ +.+++.+.+
T Consensus 653 --------------i~~~~~~~d~l~~~~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 653 --------------IFTRVGAADDLASGRSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp --------------EEEEEC-----------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred --------------HHhhCCHHHHHHhhhhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh
Confidence 11111211122223456677665 45555667999999999999999998877775 778888765
Q ss_pred cCCcEEEEEecCHHHHHhhcCEEEEE
Q 040300 516 HAKKTAFVVEHDFIMATYLADRVIVY 541 (605)
Q Consensus 516 ~~g~tiivvsHD~~~~~~~adrviv~ 541 (605)
+.|.++|++|||.+++. +||++..+
T Consensus 718 ~~g~~vl~~TH~~el~~-l~d~~~~v 742 (800)
T 1wb9_A 718 KIKALTLFATHYFELTQ-LPEKMEGV 742 (800)
T ss_dssp TTCCEEEEECSCGGGGG-HHHHSTTE
T ss_pred ccCCeEEEEeCCHHHHH-Hhhhhhce
Confidence 45899999999998764 78875433
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=169.16 Aligned_cols=80 Identities=28% Similarity=0.270 Sum_probs=73.7
Q ss_pred ccCcCcC-ChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEE
Q 040300 462 DQEVVNL-SGGELQRVALCLCLGKPA--DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRV 538 (605)
Q Consensus 462 ~~~~~~L-SGGe~QRvaiA~aL~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrv 538 (605)
.+++.+| ||||+|||+||+||+.+| ++|||||||+|||+.++..+.++|+++.. |.|||+||||++++. +|||+
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~ 467 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHH 467 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEE
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEE
Confidence 4678888 999999999999999999 99999999999999999999999999854 899999999999886 59999
Q ss_pred EEEeCC
Q 040300 539 IVYEGQ 544 (605)
Q Consensus 539 iv~~g~ 544 (605)
+++..+
T Consensus 468 ~~~~~~ 473 (517)
T 4ad8_A 468 YKVEKQ 473 (517)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999643
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-17 Score=171.13 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=82.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcC-CCCCeeeee--ccc----cCcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL-LKPDSVEDS--DVE----IPEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl-~~p~~G~i~--~~~----~~~~~i~y~~q~ 421 (605)
...|++. ..+++++|++ +|+|+||+|||||+++|+|. +.|++| +. +.. .....++|++|.
T Consensus 5 ~~~~~~~-~~l~~~~~~I-----------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~ 71 (301)
T 2qnr_A 5 PNQVHRK-SVKKGFEFTL-----------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEE 71 (301)
T ss_dssp --------------CEEE-----------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC-
T ss_pred cceECCE-EEEcCCCEEE-----------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecC
Confidence 3445442 2466777654 89999999999999999998 888887 32 111 111236777776
Q ss_pred CCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC-CCH
Q 040300 422 ISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY-LDS 500 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~-LD~ 500 (605)
......+++.+....... .........+.+. +.+..++++.++|||+|||+++|||++ ++++||||++ ||+
T Consensus 72 ~~~~~~ltv~Dt~g~~~~--~~~~e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~ 143 (301)
T 2qnr_A 72 RGVKLRLTVVDTPGYGDA--INCRDCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKP 143 (301)
T ss_dssp --CCEEEEEEEEC-------------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCH
T ss_pred CCcccCcchhhhhhhhhh--cCcHHHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCH
Confidence 443333444332211000 0000000111111 234456789999999999999999986 9999999985 999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFI 529 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~ 529 (605)
... ++++++..+.+.++|+++||+.
T Consensus 144 ~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 144 LDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 763 5666665445789999999974
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-16 Score=164.75 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=88.5
Q ss_pred eceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCH
Q 040300 368 EGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHP 445 (605)
Q Consensus 368 ~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~ 445 (605)
.|.+.+|++++|+||||||||||++.|++.. +|+.|.. .-.+-|+.-.... ....+..... . . ....
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~------~G~vi~i~~e~~~-~~~~i~~i~q-~--~-~~~~ 193 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL------NGSVIWIDTENTF-RPERIREIAQ-N--R-GLDP 193 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSC------SCEEEEEESSSCC-CHHHHHHHHH-T--T-TCCH
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCC------CCeEEEEeCCCCC-CHHHHHHHHH-H--c-CCCH
Confidence 3667778999999999999999999999998 6666310 0011222211110 0001111110 0 0 0111
Q ss_pred HHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc-------cCCCEEEEecCCCCCCHHH------------HHHH
Q 040300 446 QFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG-------KPADIYLIDEPSAYLDSEQ------------RIVA 506 (605)
Q Consensus 446 ~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~-------~~p~lllLDEPt~~LD~~~------------~~~l 506 (605)
..+++.+.+.. . .-|++++|++.++++++ .+|+++|+||||++||+.. ...+
T Consensus 194 ---~~v~~ni~~~~----~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~ 264 (349)
T 1pzn_A 194 ---DEVLKHIYVAR----A--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 264 (349)
T ss_dssp ---HHHGGGEEEEE----C--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHH
T ss_pred ---HHHhhCEEEEe----c--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHH
Confidence 12222221111 0 11577888888888887 6899999999999999862 4566
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHH
Q 040300 507 AKVIKRFILHAKKTAFVVEHDFIMAT 532 (605)
Q Consensus 507 ~~~l~~l~~~~g~tiivvsHD~~~~~ 532 (605)
+..|++++++.+.|||+++|+.....
T Consensus 265 l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 265 LADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp HHHHHHHHHHTTCEEEEEEECC----
T ss_pred HHHHHHHHHHcCcEEEEEcccccccc
Confidence 77777777777999999999876544
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-15 Score=145.01 Aligned_cols=78 Identities=18% Similarity=0.070 Sum_probs=60.9
Q ss_pred CCCCChHH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHH--------HHHHHHHHHHHhhcC-CcEEEEEecCHh----
Q 040300 214 VGDLSGGE--LQRFAIAVVAVQN-AEIYMFDEPSSYLDVK--------QRLKAAQVVRSLLRP-NSYVIVVEHDLS---- 277 (605)
Q Consensus 214 v~~LSGGe--~QRvaIA~aL~~~-p~vlllDEPts~LD~~--------~r~~~~~~i~~l~~~-g~tvivvsHdl~---- 277 (605)
+.++|+++ +|+++.+++++.+ |+++|+||||+.||.. ....+++.|++++++ +.+||+++|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~ 161 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRT 161 (220)
T ss_dssp EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTT
T ss_pred EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCC
Confidence 34556664 5678888899986 9999999999999973 224455667777654 899999999876
Q ss_pred ---------HHHhhcCEEEEEeC
Q 040300 278 ---------VLDYLSDFICCLYG 291 (605)
Q Consensus 278 ---------~l~~~~D~i~vl~g 291 (605)
.+.++||++++|+.
T Consensus 162 ~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 162 EMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp SSCCSCCCHHHHHTSSEEEEEEE
T ss_pred CccccCCCcceeecCcEEEEEEE
Confidence 67889999999964
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-15 Score=166.38 Aligned_cols=78 Identities=26% Similarity=0.298 Sum_probs=73.3
Q ss_pred ccCCCC-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 212 RNVGDL-SGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 212 r~v~~L-SGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
+++.+| ||||+|||+||++|+.+| ++|||||||++||+..+..+.++|+++.+ +.+||+||||++++. .||++++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEE
Confidence 567888 999999999999999999 99999999999999999999999999987 899999999999886 5999999
Q ss_pred EeC
Q 040300 289 LYG 291 (605)
Q Consensus 289 l~g 291 (605)
|+.
T Consensus 470 ~~~ 472 (517)
T 4ad8_A 470 VEK 472 (517)
T ss_dssp EEC
T ss_pred Eec
Confidence 964
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-18 Score=166.26 Aligned_cols=160 Identities=16% Similarity=0.127 Sum_probs=108.6
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 180 (605)
++|+++||+|+||||||||+++|+|++.|..+-+...+ .++....+. ........ + ..+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~------~~~~~~~~~------~~~~~~~~----~--~~~--- 62 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDH------YYKDLGHLP------LEERLRVN----Y--DHP--- 62 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGG------CBCCCTTSC------HHHHHHSC----T--TSG---
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCc------cccCccccc------HHHhcCCC----C--CCh---
Confidence 58999999999999999999999999876323221100 001001000 00000000 0 000
Q ss_pred hchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHH----HHHHHHHHHHccCCCEEEEeCCCCC-------CCH
Q 040300 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE----LQRFAIAVVAVQNAEIYMFDEPSSY-------LDV 249 (605)
Q Consensus 181 ~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe----~QRvaIA~aL~~~p~vlllDEPts~-------LD~ 249 (605)
....+.++.++++.+++.+..++++.++|+|| +||+++|++++.+|.++++||||++ ||+
T Consensus 63 ---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~ 133 (211)
T 3asz_A 63 ---------DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDA 133 (211)
T ss_dssp ---------GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEEC
T ss_pred ---------hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeC
Confidence 01123456677788888877888999999996 4788999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhh-cCCcEEEEEecCHhH-H-----------HhhcCEEEEEe
Q 040300 250 KQRLKAAQVVRSLL-RPNSYVIVVEHDLSV-L-----------DYLSDFICCLY 290 (605)
Q Consensus 250 ~~r~~~~~~i~~l~-~~g~tvivvsHdl~~-l-----------~~~~D~i~vl~ 290 (605)
.....+.+.+++.. +.|.|+++++|+... + ...||.|+.-.
T Consensus 134 ~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~ 187 (211)
T 3asz_A 134 DADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRG 187 (211)
T ss_dssp CHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEST
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCC
Confidence 88888888887753 458999999998532 2 14577776543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9e-16 Score=162.31 Aligned_cols=118 Identities=23% Similarity=0.176 Sum_probs=79.6
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCCCC-eeeeeccccC-----cceeEeecCcCCCCCcCcHHHHHHhhhccCCCCH
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLKPD-SVEDSDVEIP-----EFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHP 445 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-~G~i~~~~~~-----~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~ 445 (605)
.+|++++|+||||||||||+++|+|+++|+ .|.+.....+ ....++++|....
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~--------------------- 179 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVH--------------------- 179 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBT---------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeec---------------------
Confidence 456799999999999999999999999887 4544210000 0011122221000
Q ss_pred HHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 040300 446 QFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525 (605)
Q Consensus 446 ~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvs 525 (605)
...+|..+ +||+||.++|++||+|||| |.+... .+.++.. .|.++|+++
T Consensus 180 -------------------~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~----~~~~~~~-~G~~vl~t~ 228 (356)
T 3jvv_A 180 -------------------RDTLGFSE----ALRSALREDPDIILVGEMR---DLETIR----LALTAAE-TGHLVFGTL 228 (356)
T ss_dssp -------------------TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHHHH-TTCEEEEEE
T ss_pred -------------------cccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----HHHHHHh-cCCEEEEEE
Confidence 00111111 9999999999999999999 765533 3334333 599999999
Q ss_pred cCHHHHHhhcCEEEEEe
Q 040300 526 HDFIMATYLADRVIVYE 542 (605)
Q Consensus 526 HD~~~~~~~adrviv~~ 542 (605)
|+.+.+ ..+||+++|.
T Consensus 229 H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 229 HTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp SCSSHH-HHHHHHHHTS
T ss_pred ccChHH-HHHHHHhhhc
Confidence 999988 6789998874
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-16 Score=164.51 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=85.1
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhh--HHH--HHHHHHHHhhcccccccch
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNY--FTR--ILEDNLKAIIKPQYVDHIP 177 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~--~~~--~~~~~~~~~~~~q~~~~~~ 177 (605)
+|++++|+|+||||||||++.|+|+++|+.|++.. .|.+.... ..+ .+.......+.+|.....|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l-----------~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p 169 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF-----------CAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDS 169 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE-----------ECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE-----------EeecCCChhHHHHHHHHHHhcCceEEEeCCCCCH
Confidence 69999999999999999999999999999998741 11111100 000 0001111122223222222
Q ss_pred hhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHH
Q 040300 178 KAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYLDVKQRLKA 255 (605)
Q Consensus 178 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~LD~~~r~~~ 255 (605)
.. ++.+.+...........+++..|+.+..++.+.+| ++||++||||++.+|+ ++.|| |+++.+ +
T Consensus 170 ~~---~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eL---s~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 170 AA---LAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEEL---KKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp HH---HHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHH---HHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred HH---HHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHH---HHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 11 11111110000000001223344444334444444 4899999999999999 56666 555544 4
Q ss_pred HHHHHHhhcC-CcEEEEEecCHh
Q 040300 256 AQVVRSLLRP-NSYVIVVEHDLS 277 (605)
Q Consensus 256 ~~~i~~l~~~-g~tvivvsHdl~ 277 (605)
.+.++++.+. +.|+|++||+..
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHcCCcEEEEECCcc
Confidence 5566666544 899999999843
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-15 Score=172.36 Aligned_cols=120 Identities=20% Similarity=0.217 Sum_probs=84.6
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCCC-CCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhh
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKLK-PNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQ 181 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 181 (605)
|++++|+||||||||||+|+|+|+.. |..|.+.. ... . ...+++++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp--a~~--------~------------------~i~~v~~i~---- 623 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP--AEE--------A------------------HLPLFDGIY---- 623 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS--SSE--------E------------------EECCCSEEE----
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee--hhc--------c------------------ceeeHHHhh----
Confidence 99999999999999999999999864 56675421 000 0 001111110
Q ss_pred chhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHHH-HHH
Q 040300 182 GNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA--VQNAEIYMFDEP---SSYLDVKQR-LKA 255 (605)
Q Consensus 182 ~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL--~~~p~vlllDEP---ts~LD~~~r-~~~ 255 (605)
..++..+ .....+|+|++|++.+|+++ +.+|+++||||| ||+||..++ ..+
T Consensus 624 --------------------~~~~~~d---~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i 680 (765)
T 1ewq_A 624 --------------------TRIGASD---DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAV 680 (765)
T ss_dssp --------------------EECCC---------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHH
T ss_pred --------------------ccCCHHH---HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHH
Confidence 0111111 11235799999999999999 999999999999 999998875 356
Q ss_pred HHHHHHhhcCCcEEEEEecCHhHHH
Q 040300 256 AQVVRSLLRPNSYVIVVEHDLSVLD 280 (605)
Q Consensus 256 ~~~i~~l~~~g~tvivvsHdl~~l~ 280 (605)
.+.|.+ .|.++|++||+.++..
T Consensus 681 ~~~L~~---~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 681 AEALHE---RRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHH---HTCEEEEECCCHHHHT
T ss_pred HHHHHh---CCCEEEEEeCCHHHHH
Confidence 666655 4899999999988765
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-16 Score=154.40 Aligned_cols=145 Identities=16% Similarity=0.148 Sum_probs=86.4
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhc
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG 182 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 182 (605)
|++++|+|+||||||||+++|+|+++ +.| +.. .|...+.... . .-...+.+|.. .+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~-----------~g~~~~~~~~--~--~~~ig~~~~~~-------~g 56 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPV-----------DGFYTEEVRQ--G--GRRIGFDVVTL-------SG 56 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCC-----------EEEECCEEET--T--SSEEEEEEEET-------TS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEE-----------cCEecchhHh--h--hceEEEEEEec-------cc
Confidence 78999999999999999999999998 888 631 1111100000 0 00000111111 00
Q ss_pred hhhhhcCchHHHHHHHHHHhhcCC--c-----hhhcccCCCCChHHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCH
Q 040300 183 NVGQVLDQKDERDMKADLCTDLDL--N-----QVIDRNVGDLSGGELQRF-AIAV---VAVQNAEIYMFDE--PSSYLDV 249 (605)
Q Consensus 183 ~v~~~l~~~~~~~~~~~~l~~l~L--~-----~~~dr~v~~LSGGe~QRv-aIA~---aL~~~p~vlllDE--Pts~LD~ 249 (605)
. ... +..++. . ....++...+|+||++++ ++++ |++.+|++||+|| |++.+|+
T Consensus 57 ~-~~~-------------l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~ 122 (189)
T 2i3b_A 57 T-RGP-------------LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ 122 (189)
T ss_dssp C-EEE-------------EEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCS
T ss_pred c-eeh-------------hhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccH
Confidence 0 000 111111 1 133455667999999998 4454 5899999999999 8999998
Q ss_pred HHHHHHHHHHHHhhcCCcEEE----EEecCH--hHHHhhcC----EEEEE
Q 040300 250 KQRLKAAQVVRSLLRPNSYVI----VVEHDL--SVLDYLSD----FICCL 289 (605)
Q Consensus 250 ~~r~~~~~~i~~l~~~g~tvi----vvsHdl--~~l~~~~D----~i~vl 289 (605)
.... .|.++.+...++| .|+||. .+++.+++ +|+.+
T Consensus 123 ~~~~----~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 123 LFIQ----AVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp HHHH----HHHHHHHCSSCCEEEECCCCCSSCCTTHHHHHTTCCSEEEEC
T ss_pred HHHH----HHHHHHhCCCcEEEEEeecCCCCchHHHHHHeecCCcEEEEe
Confidence 7544 4444444444555 345986 67777665 55555
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-15 Score=143.14 Aligned_cols=179 Identities=17% Similarity=0.156 Sum_probs=97.0
Q ss_pred CceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCC-----CCCCceeeCCCC--hhh--hhhhhccchh
Q 040300 82 DTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKL-----KPNLGRFNNPPD--WQE--ILTYFRGSEL 152 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l-----~p~~G~i~~~~~--~~~--~~~~~~g~~l 152 (605)
+++++|+. ..+.+++ +.+|.+++|+|+||+|||||++.|+|.. .|+.|....... +.. .+....|...
T Consensus 8 ~~~~~~~~--~~l~~~~-~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (210)
T 1pui_A 8 QTHFVMSA--PDIRHLP-SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 84 (210)
T ss_dssp ---CEEEE--SSGGGSS-CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC-
T ss_pred hhhheeec--CCHhHCC-CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcc
Confidence 34556752 3455544 3689999999999999999999999998 777776431000 000 0000112110
Q ss_pred hhh---HHHHHHHHHHHhhc-ccccccchhhhhchhhhhcC-chHHHHHHHHHHhhcCCchh-hcccCCCCChHHHHH-H
Q 040300 153 QNY---FTRILEDNLKAIIK-PQYVDHIPKAVQGNVGQVLD-QKDERDMKADLCTDLDLNQV-IDRNVGDLSGGELQR-F 225 (605)
Q Consensus 153 ~~~---~~~~~~~~~~~~~~-~q~~~~~~~~~~~~v~~~l~-~~~~~~~~~~~l~~l~L~~~-~dr~v~~LSGGe~QR-v 225 (605)
... ....+...+...+. ....+.+. + +.+.-. .......+.+++...++..+ ...++..+|+||+|| +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~ 159 (210)
T 1pui_A 85 AEVPEEMKRKWQRALGEYLEKRQSLQGLV--V---LMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQL 159 (210)
T ss_dssp -----CCHHHHHHHHHHHHHHCTTEEEEE--E---EEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhhhcccEEE--E---EEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHH
Confidence 000 00000000101000 00000000 0 000000 01122345566677787654 477889999999999 8
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcE
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY 268 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~t 268 (605)
+++++++.+|.++++|||||+||...+.++++.|.++..++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 160 NMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999988765543
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-15 Score=173.02 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=82.7
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCC-CCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKP-NLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
.+|++++|+||||||||||+|+|+|+..+ ..|.+. | ... ....+++++
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~v--p----------a~~----------------~~i~~~~~i--- 653 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV--P----------AQK----------------VEIGPIDRI--- 653 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB--S----------SSE----------------EEECCCCEE---
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCccc--c----------hhc----------------ccceeHHHH---
Confidence 58999999999999999999999996421 122110 0 000 000011110
Q ss_pred hhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-HHH
Q 040300 180 VQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA-AQV 258 (605)
Q Consensus 180 ~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~-~~~ 258 (605)
+..++..+.+....+++|+++++ ++.+..++.+|+++|||||++|+|+.....+ ..+
T Consensus 654 ---------------------~~~~~~~d~l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~l 711 (800)
T 1wb9_A 654 ---------------------FTRVGAADDLASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWAC 711 (800)
T ss_dssp ---------------------EEEEC-----------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHH
T ss_pred ---------------------HhhCCHHHHHHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 11122222223344567777764 4555557899999999999999998777665 678
Q ss_pred HHHhhc-CCcEEEEEecCHhHHHhhcCEE
Q 040300 259 VRSLLR-PNSYVIVVEHDLSVLDYLSDFI 286 (605)
Q Consensus 259 i~~l~~-~g~tvivvsHdl~~l~~~~D~i 286 (605)
++.+.+ .|.++|++|||.++.. ++|++
T Consensus 712 l~~l~~~~g~~vl~~TH~~el~~-l~d~~ 739 (800)
T 1wb9_A 712 AENLANKIKALTLFATHYFELTQ-LPEKM 739 (800)
T ss_dssp HHHHHHTTCCEEEEECSCGGGGG-HHHHS
T ss_pred HHHHHhccCCeEEEEeCCHHHHH-Hhhhh
Confidence 888877 4999999999997654 67654
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-15 Score=156.42 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=47.7
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+||+||.++|+++|+|||| |... ++.+.+++..|.+||+++|+.+.+ ..+||++.|.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChHH-HHHHHHhhhc
Confidence 9999999999999999999 6554 445455566799999999999988 5789998874
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-15 Score=149.78 Aligned_cols=162 Identities=16% Similarity=0.145 Sum_probs=87.3
Q ss_pred eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcc
Q 040300 92 FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKP 170 (605)
Q Consensus 92 f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 170 (605)
..|.+++ .+.+|+++||+|+||||||||+++|+|++ |.+... .....+.++....+....+ ..+...... .
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-~~~~~i~~v~~d~~~~~l~--~~~~~~~~~-~ 84 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-QRQRKVVILSQDRFYKVLT--AEQKAKALK-G 84 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-GGGCSEEEEEGGGGBCCCC--HHHHHHHHT-T
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-ccCCceEEEeCCcCccccC--HhHhhhhhc-c
Confidence 3466666 46799999999999999999999999976 432110 0000000000000000000 000111000 0
Q ss_pred cccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 040300 171 QYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK 250 (605)
Q Consensus 171 q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~ 250 (605)
.+....+. ......+.+.++.+ .+..++.+..||+||+||+++ ++++.+|+++|||||...++..
T Consensus 85 ~~~~~~~~------------~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 85 QYNFDHPD------------AFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CCCTTSGG------------GBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred CCCCCCcc------------cccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 00000000 00122333444443 455678899999999999988 5888999999999999888863
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEecCHhHH-HhhcCEE
Q 040300 251 QRLKAAQVVRSLLRPNSYVIVVEHDLSVL-DYLSDFI 286 (605)
Q Consensus 251 ~r~~~~~~i~~l~~~g~tvivvsHdl~~l-~~~~D~i 286 (605)
+.++ .+.+|++++|+...+ ..+++.+
T Consensus 150 --------l~~~--~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 150 --------IRDM--FHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp --------HHTT--CSEEEEEECCHHHHHHHHHHHHT
T ss_pred --------HHHh--cCeEEEEECCHHHHHHHHHHHHH
Confidence 2333 378999999974444 4444443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-15 Score=158.53 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=51.7
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC-CCHHHHHHHHHHHHHhhcC-CcEEEEEecCHh
Q 040300 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY-LDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLS 277 (605)
Q Consensus 208 ~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~-LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~ 277 (605)
+..++++.++|||+|||+++|+|++ ++++||||++ ||+... ++++++.+. +.++|+.+||+.
T Consensus 105 ~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 105 EQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 4467889999999999999999886 9999999985 999863 566666654 788999999985
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-14 Score=164.33 Aligned_cols=131 Identities=20% Similarity=0.264 Sum_probs=82.3
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCC-Ceeeee--cccc----------CcceeEeecCcCCCCCcCcHHHHHHhhhccCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKP-DSVEDS--DVEI----------PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSY 442 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p-~~G~i~--~~~~----------~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~ 442 (605)
.++|+||||||||||+++|+|+..| ++|.+. +..+ ....++|++|+.......+|.+++...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~----- 121 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA----- 121 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-----
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHH-----
Confidence 3899999999999999999999989 788864 1110 123589999986655556776655321
Q ss_pred CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC------CCCCCHHHHHHHHHHHHHHHhc
Q 040300 443 THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP------SAYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 443 ~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP------t~~LD~~~~~~l~~~l~~l~~~ 516 (605)
...+...+ ..+| .+++.++.+....|+++|+||| |++||+..+..+.+++++++.+
T Consensus 122 ------~~~~~~~~---------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~ 183 (608)
T 3szr_A 122 ------QNAIAGEG---------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR 183 (608)
T ss_dssp ------HHHHHCSS---------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS
T ss_pred ------HHHhcCCc---------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc
Confidence 01110000 0011 1223333344568999999999 9999999999999999997543
Q ss_pred -CCcEEEEEecCHH
Q 040300 517 -AKKTAFVVEHDFI 529 (605)
Q Consensus 517 -~g~tiivvsHD~~ 529 (605)
.+.++++++||++
T Consensus 184 ~~~iil~vvt~~~d 197 (608)
T 3szr_A 184 QETISLVVVPSNVD 197 (608)
T ss_dssp SSCCEEEEEESSSC
T ss_pred CCCCceEEEeccch
Confidence 4678899999965
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-15 Score=150.21 Aligned_cols=135 Identities=19% Similarity=0.170 Sum_probs=92.9
Q ss_pred CeEEEEEecCCCCHHHHHHHHH---cCCCCCeeeeec--cccC---cceeEeecCcCCCCCcCcHHHHHHhhh-------
Q 040300 374 SQIIVMLGENGTGKTTFIRMLA---GLLKPDSVEDSD--VEIP---EFNVSYKPQKISPKFQSTVRHLLHQKI------- 438 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~---Gl~~p~~G~i~~--~~~~---~~~i~y~~q~~~~~~~~tv~~~~~~~~------- 438 (605)
+++++|+||||||||||+++|+ |+..|+.|.+.. .... ...+.+++|+....+..++.+++....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~ 106 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH 106 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Confidence 4789999999999999999999 999999887641 1110 112344455543344456666553311
Q ss_pred --ccCC-CCHHHHHHHH--hhcC------------CchhhccCcCcCChhHHHHHHHHHHH-ccCCCEEEEe----cCCC
Q 040300 439 --RDSY-THPQFVSDVM--KPLL------------IEQLMDQEVVNLSGGELQRVALCLCL-GKPADIYLID----EPSA 496 (605)
Q Consensus 439 --~~~~-~~~~~~~~~l--~~l~------------l~~~~~~~~~~LSGGe~QRvaiA~aL-~~~p~lllLD----EPt~ 496 (605)
...+ .....+..+. ..++ +..+.++.+.+||| || ++| +.+|++++|| |||+
T Consensus 107 ~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~ 179 (246)
T 2bbw_A 107 WLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLV 179 (246)
T ss_dssp EEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCB
T ss_pred EEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccccccc
Confidence 0111 1222223332 2333 45567888999999 66 677 9999999999 9999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 040300 497 YLDSEQRIVAAKVIKRFIL 515 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~ 515 (605)
+||..++..+.+.|+++.+
T Consensus 180 ~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 180 QQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp CCGGGSHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHH
Confidence 9999999999999998854
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.9e-13 Score=132.37 Aligned_cols=154 Identities=13% Similarity=0.105 Sum_probs=85.5
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHc--CCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAG--LLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQ 446 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~G--l~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 446 (605)
|-+.+|++++|+||||||||||++.|++ +.+|+.|. ....+-|+.-.... ....+.+... .. .+ ..+
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~------~~~~~~~i~~~~~~-~~~~~~~~~~-~~--g~-~~~ 87 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGG------GEGKAMYIDTEGTF-RPERLLAVAE-RY--GL-SGS 87 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTC------CSSEEEEEESSSCC-CHHHHHHHHH-HT--TC-CHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCC------CCCeEEEEECCCCc-CHHHHHHHHH-Hc--CC-CHH
Confidence 5678889999999999999999999999 56553221 01123344322110 0001111111 11 11 111
Q ss_pred HHHHHHhhcCCchhhccCcCcCChhHHHHH-HHHHHH--ccCCCEEEEecCCCCCCHH-------H-----HHHHHHHHH
Q 040300 447 FVSDVMKPLLIEQLMDQEVVNLSGGELQRV-ALCLCL--GKPADIYLIDEPSAYLDSE-------Q-----RIVAAKVIK 511 (605)
Q Consensus 447 ~~~~~l~~l~l~~~~~~~~~~LSGGe~QRv-aiA~aL--~~~p~lllLDEPt~~LD~~-------~-----~~~l~~~l~ 511 (605)
++++.+. ....++..+...+ .-+..+ ..+|+++++|||++.+|.. . ...++..|+
T Consensus 88 ---~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~ 157 (243)
T 1n0w_A 88 ---DVLDNVA-------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLL 157 (243)
T ss_dssp ---HHHHTEE-------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHH
T ss_pred ---HHhhCeE-------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 1222211 1233555554432 222223 3589999999999999985 2 345666677
Q ss_pred HHHhcCCcEEEEEecCHHHHHh-------------------hcCEEEEEeC
Q 040300 512 RFILHAKKTAFVVEHDFIMATY-------------------LADRVIVYEG 543 (605)
Q Consensus 512 ~l~~~~g~tiivvsHD~~~~~~-------------------~adrviv~~g 543 (605)
+++++.+.|||+++|....... +||++++++.
T Consensus 158 ~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 158 RLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp HHHHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred HHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 7766679999999997655433 7999999873
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-14 Score=148.72 Aligned_cols=86 Identities=17% Similarity=0.071 Sum_probs=74.4
Q ss_pred ccCcC-cCChhHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q 040300 462 DQEVV-NLSGGELQRVALCLCLG---------KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA 531 (605)
Q Consensus 462 ~~~~~-~LSGGe~QRvaiA~aL~---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~ 531 (605)
++++. .|||||||||+||++|+ .+|+||||||||++||+..+..+++.|.++ +.|+|++||+ +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~qt~i~~th~-~~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----PQAIVTGTEL-AP- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----SEEEEEESSC-CT-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----CcEEEEEEec-cc-
Confidence 56677 89999999999999999 899999999999999999999999999886 2799999995 43
Q ss_pred HhhcCEEEEEeCCcceeeecCChhhh
Q 040300 532 TYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 532 ~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
.||++++++++.. ...++|+++
T Consensus 333 --~~~~i~~l~~G~i--~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRF--TPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEE--EECCCTTTS
T ss_pred --cCCEEEEEECCEE--EecCCHHHH
Confidence 8999999986543 356777776
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-13 Score=144.05 Aligned_cols=78 Identities=32% Similarity=0.489 Sum_probs=69.7
Q ss_pred ccCCCCChHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcC
Q 040300 212 RNVGDLSGGELQRF------AIAVVAVQN-AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSD 284 (605)
Q Consensus 212 r~v~~LSGGe~QRv------aIA~aL~~~-p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D 284 (605)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|+++.+ +.+||+|||+.+ +..+||
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~-~~~~~d 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE-LEDVAD 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG-GGGGCS
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH-HHhhCC
Confidence 67789999999988 567888999 999999999999999999999999999754 578999999987 578999
Q ss_pred EEEEEeC
Q 040300 285 FICCLYG 291 (605)
Q Consensus 285 ~i~vl~g 291 (605)
+++++..
T Consensus 354 ~~~~l~k 360 (371)
T 3auy_A 354 VIINVKK 360 (371)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999963
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-14 Score=142.55 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=83.5
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCC--Ceeeeec--cccC---cceeEeecCcCCCCCcCcHHHHHHhhhccCC
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKP--DSVEDSD--VEIP---EFNVSYKPQKISPKFQSTVRHLLHQKIRDSY 442 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p--~~G~i~~--~~~~---~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~ 442 (605)
.+++|++++|+||||||||||+++|+|+.+| ..|.+.. .... ...++|++|.......+++ ...+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~--------~~~f 83 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS--------RDAF 83 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH--------TTCE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHh--------cCHH
Confidence 4566789999999999999999999999986 5666531 1110 1236666664211000011 0000
Q ss_pred CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 040300 443 THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF 522 (605)
Q Consensus 443 ~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tii 522 (605)
++.+.+ ...+.|-.+++ +..++..++++||| ||+..+..+.+.+. .+.||+
T Consensus 84 ---------~E~~~~-------~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~ 134 (219)
T 1s96_A 84 ---------LEHAEV-------FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIF 134 (219)
T ss_dssp ---------EEEEEE-------TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEE
T ss_pred ---------HHHHHH-------HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEE
Confidence 000000 00011111221 23334457999999 99999998887754 389999
Q ss_pred EEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 523 VVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 523 vvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
++|||++++.. |+ +..+ .++++++...+
T Consensus 135 i~th~~~~l~~---Rl--~~rG------~~~~e~i~~rl 162 (219)
T 1s96_A 135 ILPPSKIELDR---RL--RGRG------QDSEEVIAKRM 162 (219)
T ss_dssp EECSSHHHHHH---HH--HTTS------CSCHHHHHHHH
T ss_pred EECCCHHHHHH---HH--HHcC------CCCHHHHHHHH
Confidence 99999998765 32 2221 35677776543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-15 Score=158.39 Aligned_cols=164 Identities=17% Similarity=0.146 Sum_probs=95.4
Q ss_pred cCC-CCCC--CcEEEEECCCCChHHHHHHHHhcCCCCCC----ceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhh
Q 040300 96 RLP-VPRP--GQVLGLVGTNGIGKSTALKILAGKLKPNL----GRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAII 168 (605)
Q Consensus 96 ~l~-~~~~--Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~----G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 168 (605)
.+| .+.+ |++++|+|+||||||||+++|+|++.|+. |++.. . ....|.++....... ..+..
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i----~---~~~~~~~~~~~~~~~--~~I~~-- 228 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV----F---EKLGGDEQAMQYSDY--PQMAL-- 228 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH----H---HSSSSCTTSSCTTTH--HHHHH--
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH----H---hhcCCCcccCChhHH--HHHHH--
Confidence 355 4678 99999999999999999999999999988 55320 0 000111110000000 00100
Q ss_pred cccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc-cCCCEEEEeC---CC
Q 040300 169 KPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV-QNAEIYMFDE---PS 244 (605)
Q Consensus 169 ~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~-~~p~vlllDE---Pt 244 (605)
.+|. +..+..++.+.+ ..++ .+..++.+..+|+|++|+..+++++. .+|+++|||| |+
T Consensus 229 ~~q~----~~~~~~t~~~nl-------------~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~ 290 (365)
T 1lw7_A 229 GHQR----YIDYAVRHSHKI-------------AFID-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 290 (365)
T ss_dssp HHHH----HHHHHHHHCSSE-------------EEES-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-
T ss_pred HHHH----HHHHHHhccCCE-------------EEEe-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCc
Confidence 0110 000000111100 0001 11223334456677788888888774 6999999999 65
Q ss_pred ------CCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 245 ------SYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 245 ------s~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
+++|+.+|..+++.|+++.+ .+.+||+++|. ...+.+++++.++
T Consensus 291 ~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 291 VDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp ----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHH
T ss_pred ccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHH
Confidence 58999999999999988765 38899999986 4556666665544
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-13 Score=144.94 Aligned_cols=77 Identities=27% Similarity=0.407 Sum_probs=68.5
Q ss_pred cCcCcCChhHHHHH------HHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q 040300 463 QEVVNLSGGELQRV------ALCLCLGKP-ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLA 535 (605)
Q Consensus 463 ~~~~~LSGGe~QRv------aiA~aL~~~-p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~a 535 (605)
+++..|||||+||| ++|++|+.+ |++|||||||++||+..+..+.+.|+++ . .+.+||+||||.+ +..+|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~-~~~~vi~~th~~~-~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV-K-SIPQMIIITHHRE-LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC-C-SCSEEEEEESCGG-GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh-c-cCCeEEEEEChHH-HHhhC
Confidence 67789999999988 557888999 9999999999999999999999999986 3 2568999999987 56789
Q ss_pred CEEEEEe
Q 040300 536 DRVIVYE 542 (605)
Q Consensus 536 drviv~~ 542 (605)
|++++++
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-15 Score=158.80 Aligned_cols=157 Identities=12% Similarity=0.151 Sum_probs=94.8
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCe----eeeecc-ccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV-EIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~----G~i~~~-~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|++++|+||||||||||+++|+|+++|++ |.+... ..... ...... ........ .... . ..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~-------~~~~~~-~~~~~I~~-~~q~-~--~~~~ 237 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD-------EQAMQY-SDYPQMAL-GHQR-Y--IDYA 237 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC-------TTSSCT-TTHHHHHH-HHHH-H--HHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC-------cccCCh-hHHHHHHH-HHHH-H--HHHH
Confidence 47899999999999999999999999998 543200 00000 000000 01111110 0000 0 0011
Q ss_pred HHHHhhcCC--chhhccCcCcCChhHHHHHHHHHHH-ccCCCEEEEec---CC------CCCCHHHHHHHHHHHHHHHhc
Q 040300 449 SDVMKPLLI--EQLMDQEVVNLSGGELQRVALCLCL-GKPADIYLIDE---PS------AYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 449 ~~~l~~l~l--~~~~~~~~~~LSGGe~QRvaiA~aL-~~~p~lllLDE---Pt------~~LD~~~~~~l~~~l~~l~~~ 516 (605)
..+.+.+-+ .+..+..+..+|+|++|+..+++++ ..+|+++|||| |+ .++|..+|..+.++|+++.++
T Consensus 238 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~ 317 (365)
T 1lw7_A 238 VRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK 317 (365)
T ss_dssp HHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHG
T ss_pred HhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH
Confidence 111111111 1223334556778888888888877 46999999999 65 589999999999999988666
Q ss_pred CCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 517 AKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 517 ~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
.+.++++++|. ..+.++++++.+++.
T Consensus 318 ~~~~ililde~-~~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 318 YKVPYIEIESP-SYLDRYNQVKAVIEK 343 (365)
T ss_dssp GGCCCEEEECS-SHHHHHHHHHHHHHH
T ss_pred cCCCEEEeCCC-CHHHHHHHHHHHHHH
Confidence 68999999986 466677877776653
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-13 Score=145.57 Aligned_cols=80 Identities=25% Similarity=0.257 Sum_probs=71.1
Q ss_pred hccCcCcCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcC
Q 040300 461 MDQEVVNLSGGELQRVALCLCLG----KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLAD 536 (605)
Q Consensus 461 ~~~~~~~LSGGe~QRvaiA~aL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~ad 536 (605)
..+++..||||||||++||++|+ .+|++|||||||++||+..+..+.++|+++.. .+.++|+|||+..++ ..||
T Consensus 327 ~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~~-~~~d 404 (430)
T 1w1w_A 327 RFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTMF-EKSD 404 (430)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHHH-TTCS
T ss_pred cccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHHH-HhCC
Confidence 34678899999999999999999 58999999999999999999999999999743 478999999997664 5799
Q ss_pred EEEEEe
Q 040300 537 RVIVYE 542 (605)
Q Consensus 537 rviv~~ 542 (605)
+++++.
T Consensus 405 ~~~~~~ 410 (430)
T 1w1w_A 405 ALVGVY 410 (430)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999885
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-13 Score=144.45 Aligned_cols=79 Identities=25% Similarity=0.377 Sum_probs=70.9
Q ss_pred ccCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEE
Q 040300 212 RNVGDLSGGELQRFAIAVVAV----QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFIC 287 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~----~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~ 287 (605)
+++..|||||+||++||++|+ .+|++|||||||++||+..+..+.++|+++.+.+.++|+|||+...+ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 455679999999999999999 58999999999999999999999999999876688999999997665 5799999
Q ss_pred EEeC
Q 040300 288 CLYG 291 (605)
Q Consensus 288 vl~g 291 (605)
+++.
T Consensus 408 ~~~~ 411 (430)
T 1w1w_A 408 GVYR 411 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9963
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-14 Score=139.20 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=81.0
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----C-cceeEeecCcCCCCCcCcHHHHHHhhhcc--C
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----P-EFNVSYKPQKISPKFQSTVRHLLHQKIRD--S 441 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~-~~~i~y~~q~~~~~~~~tv~~~~~~~~~~--~ 441 (605)
+.+|++++|+||||||||||+++|+|. |+.|.+. +... . ...++|++|... ...++.+++...... .
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~ 81 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAK 81 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhc
Confidence 445689999999999999999999998 6667543 1111 1 112456666432 234565554321000 0
Q ss_pred CCCHHHHHHHHhhcCCchhh--ccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Q 040300 442 YTHPQFVSDVMKPLLIEQLM--DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF 513 (605)
Q Consensus 442 ~~~~~~~~~~l~~l~l~~~~--~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 513 (605)
......++.++..+++..+. +.++..+|+|++||+++||++.++|+++ +|+..+..+.+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 82 EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 00000001122223444433 5567899999999999999999999876 6888777777766654
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.38 E-value=9.2e-14 Score=146.68 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=81.8
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCC--CCCC----ceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhccccc
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKL--KPNL----GRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYV 173 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l--~p~~----G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~ 173 (605)
+.+|++++|+|+||||||||++.|+|.. +|+. |++- ++.+.+... . ..+... +|..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi----------~i~~e~~~~--~----~~i~~i--~q~~ 189 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVI----------WIDTENTFR--P----ERIREI--AQNR 189 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEE----------EEESSSCCC--H----HHHHHH--HHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEE----------EEeCCCCCC--H----HHHHHH--HHHc
Confidence 4689999999999999999999999998 6766 3411 122221100 0 000000 0100
Q ss_pred ccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc-------cCCCEEEEeCCCCC
Q 040300 174 DHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV-------QNAEIYMFDEPSSY 246 (605)
Q Consensus 174 ~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~-------~~p~vlllDEPts~ 246 (605)
...+. .+++.+-+.. . .-|.+++|++.++++++ .+|+++|+||||+.
T Consensus 190 ~~~~~--------------------~v~~ni~~~~----~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 190 GLDPD--------------------EVLKHIYVAR----A--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp TCCHH--------------------HHGGGEEEEE----C--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred CCCHH--------------------HHhhCEEEEe----c--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 00000 1111111110 0 01567777888887777 68999999999999
Q ss_pred CCHH--------H----HHHHHHHHHHhhc-CCcEEEEEecCHhHHHh
Q 040300 247 LDVK--------Q----RLKAAQVVRSLLR-PNSYVIVVEHDLSVLDY 281 (605)
Q Consensus 247 LD~~--------~----r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~ 281 (605)
||+. + ...++..|+++++ .+.|||+++|.....+.
T Consensus 244 ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~ 291 (349)
T 1pzn_A 244 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDA 291 (349)
T ss_dssp HHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----
T ss_pred hhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccccc
Confidence 9985 2 3455666666665 48999999998775543
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=128.21 Aligned_cols=58 Identities=10% Similarity=0.120 Sum_probs=38.6
Q ss_pred cCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHhhcC-CcEEEEEecCHhHHH-------------------
Q 040300 233 QNAEIYMFDEPSSYLDVK-------Q-----RLKAAQVVRSLLRP-NSYVIVVEHDLSVLD------------------- 280 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~-------~-----r~~~~~~i~~l~~~-g~tvivvsHdl~~l~------------------- 280 (605)
.+|+++++|||++.+|.. . ...++..|.+++++ |.|||+++|......
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 589999999999999974 2 34455556666554 999999999766543
Q ss_pred hhcCEEEEEe
Q 040300 281 YLSDFICCLY 290 (605)
Q Consensus 281 ~~~D~i~vl~ 290 (605)
++||.+++|+
T Consensus 198 ~~~d~vi~l~ 207 (243)
T 1n0w_A 198 HASTTRLYLR 207 (243)
T ss_dssp CTTCEEEEEE
T ss_pred hcCcEEEEEE
Confidence 3788888886
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-13 Score=130.97 Aligned_cols=146 Identities=10% Similarity=0.055 Sum_probs=86.3
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCC-----CCCeeeeeccc---c-CcceeEeecCcC----CCC----CcCcHHHH
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLL-----KPDSVEDSDVE---I-PEFNVSYKPQKI----SPK----FQSTVRHL 433 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~-----~p~~G~i~~~~---~-~~~~i~y~~q~~----~~~----~~~tv~~~ 433 (605)
+.+|++++|+|+||+|||||++.|+|.. .|+.|...... . ....+--.|-.. ... +...+..+
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 3445789999999999999999999998 77777642100 0 011110001000 000 00001111
Q ss_pred HHh--hhc------c-CC-CCH--HHHHHHHhhcCCchh-hccCcCcCChhHHHH-HHHHHHHccCCCEEEEecCCCCCC
Q 040300 434 LHQ--KIR------D-SY-THP--QFVSDVMKPLLIEQL-MDQEVVNLSGGELQR-VALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 434 ~~~--~~~------~-~~-~~~--~~~~~~l~~l~l~~~-~~~~~~~LSGGe~QR-vaiA~aL~~~p~lllLDEPt~~LD 499 (605)
+.. ... . .. ... ....++++..++..+ ...++..+|+||+|| +..+++++.+|.++++|||||++|
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~ 182 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLK 182 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTT
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecC
Confidence 110 000 0 00 111 233455666676643 366788999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 040300 500 SEQRIVAAKVIKRFILH 516 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~ 516 (605)
.....++.+.|.++..+
T Consensus 183 ~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 183 KQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TBSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999997543
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-13 Score=145.37 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=82.1
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCCCC-eeeeeccccC-----cceeEeecCcCCCCCcCcHHHHHHhhhccCCCC
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-SVEDSDVEIP-----EFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTH 444 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-~G~i~~~~~~-----~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~ 444 (605)
+.+|++++|+||||||||||+++|+|+++|+ +|.+.....+ ...++|++|.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~----------------------- 189 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR----------------------- 189 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE-----------------------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee-----------------------
Confidence 3455899999999999999999999999987 7876311100 1122333331
Q ss_pred HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 040300 445 PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524 (605)
Q Consensus 445 ~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivv 524 (605)
.+++ .+..| +.+|+++|.++|+++++|||+ |.+... .+++.. +.|.+++.+
T Consensus 190 ---------~~g~------~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~--~~g~~vi~t 240 (372)
T 2ewv_A 190 ---------EVGE------DTKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TALRAA--ETGHLVFGT 240 (372)
T ss_dssp ---------EBTT------TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHH--TTTCEEEEC
T ss_pred ---------ecCC------CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHH--hcCCEEEEE
Confidence 1122 12344 469999999999999999999 776533 345543 358899999
Q ss_pred ecCHHHHHhhcCEEEEE
Q 040300 525 EHDFIMATYLADRVIVY 541 (605)
Q Consensus 525 sHD~~~~~~~adrviv~ 541 (605)
+|+.+ +...+||++.|
T Consensus 241 ~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 241 LHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp CCCCS-HHHHHHHHHHT
T ss_pred ECcch-HHHHHHHHHHh
Confidence 99955 66778887655
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-16 Score=150.95 Aligned_cols=168 Identities=10% Similarity=0.019 Sum_probs=97.3
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-CcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHH
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSD 450 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 450 (605)
|++++|+||||||||||+++|++ |.+|.+. +... .....++++|........++.+++.......... ....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~ 76 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLA--QNDV 76 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhc--CCcE
Confidence 57899999999999999999997 5556442 1111 1123456666432212234554432211000000 0000
Q ss_pred HHhhcCCchhhccCcCcC--ChhHHHHHHHHH------HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 040300 451 VMKPLLIEQLMDQEVVNL--SGGELQRVALCL------CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF 522 (605)
Q Consensus 451 ~l~~l~l~~~~~~~~~~L--SGGe~QRvaiA~------aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tii 522 (605)
+++.+.. ....+.+..+ |+|++|++.++. +|..+|....+|+ +||+..+.. ++.++.+. +.+.++|
T Consensus 77 ild~~~~-~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii 150 (189)
T 2bdt_A 77 VLDYIAF-PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFY 150 (189)
T ss_dssp EEESCCC-HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEE
T ss_pred EEeeccC-HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEE
Confidence 1111111 1111223345 899999988888 8888888888884 899988888 88888863 4578999
Q ss_pred EEecC-HHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 523 VVEHD-FIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 523 vvsHD-~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
.+||. ++.+..+||+|+ +.+.. ...++|+.
T Consensus 151 ~tsh~~~~~~e~~~~~i~--~~g~~--~~~~~~~~ 181 (189)
T 2bdt_A 151 NTSHLQPTNLNDIVKNLK--TNPRF--IFCMAGDP 181 (189)
T ss_dssp ECSSSCGGGHHHHHHHHH--HCGGG--SCC-----
T ss_pred eCCCCChhhHHHHHHHHh--hCCcE--EEeecCCc
Confidence 99998 999999999999 53322 34455544
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-13 Score=141.18 Aligned_cols=169 Identities=13% Similarity=0.099 Sum_probs=104.5
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------------cceeEeecCcCCCCCcCcHHHHHHh
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------------EFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------------~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
.+|++++|+||||||||||++.|+|+++|++|++. +.+.. ...+.+++|.....+..++++++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 34689999999999999999999999999998874 11111 1235688887655555677776643
Q ss_pred hhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 040300 437 KIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 516 (605)
.....+. .-+++..|..+.....+.+||+ +++++..++.+++||.+|. . .+.+.++.+.+.
T Consensus 207 ~~~~~~d-----~vliDtaG~~~~~~~l~~eL~~-------i~ral~~de~llvLDa~t~-~------~~~~~~~~~~~~ 267 (328)
T 3e70_C 207 AKARGID-----VVLIDTAGRSETNRNLMDEMKK-------IARVTKPNLVIFVGDALAG-N------AIVEQARQFNEA 267 (328)
T ss_dssp HHHHTCS-----EEEEEECCSCCTTTCHHHHHHH-------HHHHHCCSEEEEEEEGGGT-T------HHHHHHHHHHHH
T ss_pred HHhccch-----hhHHhhccchhHHHHHHHHHHH-------HHHHhcCCCCEEEEecHHH-H------HHHHHHHHHHHh
Confidence 2111110 0023334444433444555553 8899998888999996664 3 444556666555
Q ss_pred CCcEEEEEecCH---------HHHHhhcCEEEEEe-CCcceeeecCChhhhhc
Q 040300 517 AKKTAFVVEHDF---------IMATYLADRVIVYE-GQPSVDCVANAPQSLLT 559 (605)
Q Consensus 517 ~g~tiivvsHD~---------~~~~~~adrviv~~-g~~~~~~~~~~p~~~~~ 559 (605)
.+.|+|++||.- ..+....-.|..+. |+.......-+|+.+..
T Consensus 268 ~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~ 320 (328)
T 3e70_C 268 VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLE 320 (328)
T ss_dssp SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHH
T ss_pred cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHH
Confidence 689999999942 23333444566554 44333334445555443
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.7e-13 Score=140.34 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=67.2
Q ss_pred cccCC-CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHH
Q 040300 211 DRNVG-DLSGGELQRFAIAVVAV---------QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLD 280 (605)
Q Consensus 211 dr~v~-~LSGGe~QRvaIA~aL~---------~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~ 280 (605)
++++. .|||||+||++||++|+ .+|+|||||||||+||+..+..+++.|.++. .|+|++||+ +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 56787 89999999999999999 8999999999999999999999999998874 799999994 43
Q ss_pred hhcCEEEEEeC
Q 040300 281 YLSDFICCLYG 291 (605)
Q Consensus 281 ~~~D~i~vl~g 291 (605)
.+|+++++..
T Consensus 333 -~~~~i~~l~~ 342 (359)
T 2o5v_A 333 -GAALTLRAQA 342 (359)
T ss_dssp -TCSEEEEEET
T ss_pred -cCCEEEEEEC
Confidence 8999999964
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-15 Score=156.06 Aligned_cols=140 Identities=19% Similarity=0.110 Sum_probs=85.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCC--------CCCeeeee--ccccCc----------------------ceeEee---c
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLL--------KPDSVEDS--DVEIPE----------------------FNVSYK---P 419 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~--------~p~~G~i~--~~~~~~----------------------~~i~y~---~ 419 (605)
++++|+|+||||||||+++|+|+. .|+.|++. +..+.. ..++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 77888763 111110 012233 2
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHH----------------HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFV----------------SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~----------------~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
|+..+.++.++.|+.. ...+... ..++..+++.+..++.. +||+||+||+..+++++
T Consensus 85 q~~~~~~~~~v~E~~~------l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 85 DKGNIQFDRLVIECTG------MADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHTSCCCSEEEEEEET------TCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEE
T ss_pred hcCCCCCCEEEEeCCC------CCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEE
Confidence 3222212222211110 1111100 01223334444444433 79999999999889999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL 534 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~ 534 (605)
.+|+++ ||| ..+.+.|+++. .+.+|+++||+...+..+
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCCCGGGG
T ss_pred ECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCCCHHHH
Confidence 999987 999 57788888863 589999999964444433
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-14 Score=148.29 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=54.5
Q ss_pred HHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH
Q 040300 200 LCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279 (605)
Q Consensus 200 ~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l 279 (605)
++..+++.+..++.. +||+||+||+..+++++.+||++ ||| ..+.+.|+++. .+.+|+++||+...+
T Consensus 126 ~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 126 VIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDIDL 192 (318)
T ss_dssp EEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCG
T ss_pred EEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCCH
Confidence 344556655554444 79999999999889999999987 998 46778888875 489999999986555
Q ss_pred HhhcC
Q 040300 280 DYLSD 284 (605)
Q Consensus 280 ~~~~D 284 (605)
+.+.|
T Consensus 193 ~~l~~ 197 (318)
T 1nij_A 193 GLLFN 197 (318)
T ss_dssp GGGSC
T ss_pred HHHhC
Confidence 55443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-13 Score=127.49 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=70.1
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHh
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMK 453 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~ 453 (605)
|+.++|+||||+|||||+++|++.+.|+.|.. +.|+ +..+++... .....
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~---------~~~~----------~~~~~~~~~-----------~~~~~ 87 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR---------GYFF----------DTKDLIFRL-----------KHLMD 87 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC---------CCEE----------EHHHHHHHH-----------HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe---------EEEE----------EHHHHHHHH-----------HHHhc
Confidence 47899999999999999999999987665521 1121 222322110 00000
Q ss_pred hcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q 040300 454 PLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA-YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528 (605)
Q Consensus 454 ~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~-~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~ 528 (605)
. ++.+ -+.....+|++|+||||++ ++|+..+..+.++|.+... .++++|++||..
T Consensus 88 ~----------------~~~~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~ 143 (180)
T 3ec2_A 88 E----------------GKDT---KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYS 143 (180)
T ss_dssp H----------------TCCS---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCC
T ss_pred C----------------chHH---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCC
Confidence 0 0000 0111123899999999985 9999999999999988743 589999999975
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=130.81 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=89.2
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHH--HHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRM--LAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQ 446 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~--L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 446 (605)
|-+.+|+++.|+||||||||||++. ++++.+++.|. ...++-|+.-.... ....+++.. ..+ .+ ..+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg------~~~~viyid~E~~~-~~~rl~~~a-~~~--gl-~~~ 241 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG------GEGKCLYIDTEGTF-RPVRLVSIA-QRF--GL-DPD 241 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC------CSSEEEEEESSSCC-CHHHHHHHH-HHT--TC-CHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCC------CCCcEEEEeCCCcc-CHHHHHHHH-HHc--CC-ChH
Confidence 5577889999999999999999994 45777665541 11233444332111 001111111 110 01 111
Q ss_pred HHHHHHhhcCCchhhccCcCcCChhHHHHHHHHH--HH--ccCCCEEEEecCCCCCCHHHH------------HHHHHHH
Q 040300 447 FVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL--CL--GKPADIYLIDEPSAYLDSEQR------------IVAAKVI 510 (605)
Q Consensus 447 ~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~--aL--~~~p~lllLDEPt~~LD~~~~------------~~l~~~l 510 (605)
.+++.+- +.....++.++-.+++ .+ ..+|+++++|||++.+|.+.. ..+++.|
T Consensus 242 ---~vleni~--------~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L 310 (400)
T 3lda_A 242 ---DALNNVA--------YARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRAL 310 (400)
T ss_dssp ---HHHHTEE--------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHH
T ss_pred ---hHhhcEE--------EeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHH
Confidence 2222111 1222334444333332 22 257999999999999996432 5678888
Q ss_pred HHHHhcCCcEEEEEecCH-------------------HHHHhhcCEEEEEeC
Q 040300 511 KRFILHAKKTAFVVEHDF-------------------IMATYLADRVIVYEG 543 (605)
Q Consensus 511 ~~l~~~~g~tiivvsHD~-------------------~~~~~~adrviv~~g 543 (605)
++++++.+.|||+|+|.. ..+.+++|.+++|+.
T Consensus 311 ~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 311 QRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp HHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEE
T ss_pred HHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 888877899999999982 234677899988874
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-13 Score=136.92 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=45.8
Q ss_pred CchhhcccCCCCChHHHHHHHHHHHH-ccCCCEEEEe----CCCCCCCHHHHHHHHHHHHHhhcC
Q 040300 206 LNQVIDRNVGDLSGGELQRFAIAVVA-VQNAEIYMFD----EPSSYLDVKQRLKAAQVVRSLLRP 265 (605)
Q Consensus 206 L~~~~dr~v~~LSGGe~QRvaIA~aL-~~~p~vlllD----EPts~LD~~~r~~~~~~i~~l~~~ 265 (605)
+..+.+|.+.+||| |+ +|+ +.+|++++|| |||++||+..+..+.+.|+++.+.
T Consensus 142 l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 142 KDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp HHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 34566889999999 66 677 9999999999 999999999999999999888664
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.28 E-value=4.9e-13 Score=140.93 Aligned_cols=104 Identities=18% Similarity=0.095 Sum_probs=74.0
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCC-CCeeeeecc------ccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCC--
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLK-PDSVEDSDV------EIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTH-- 444 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~-p~~G~i~~~------~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~-- 444 (605)
|++++|+||||+|||||+++|+|+.. |++|.+... ......++|++|........+++++. .. ....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~---l~-~l~~~e 290 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG---LW-HLEPEQ 290 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC---CC-CCCHHH
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh---hc-CCCHHH
Confidence 47899999999999999999999999 999987421 11234688999875433334555531 11 1111
Q ss_pred -HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHH
Q 040300 445 -PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 445 -~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
...+.++++.+++..+.++.+.+|| ||+||++||+++
T Consensus 291 ~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 291 ITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 1234578888999999999999999 999999999864
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-13 Score=145.18 Aligned_cols=152 Identities=13% Similarity=0.012 Sum_probs=84.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeee--e-c--cccCcceeEeecCcCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVED--S-D--VEIPEFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i--~-~--~~~~~~~i~y~~q~~~ 423 (605)
.+.|++. ..+++++|++ +|+|+||+|||||+++|+|...|+.|.. . . .......++|++|...
T Consensus 18 ~~~y~~~-~vl~~vsf~I-----------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~ 85 (418)
T 2qag_C 18 PNQVYRK-SVKRGFEFTL-----------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG 85 (418)
T ss_dssp CCCTTTT-TCC-CCCEEE-----------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-----
T ss_pred ceeECCE-EEecCCCEEE-----------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCC
Confidence 5556543 3577887764 8999999999999999999988654421 0 0 0011124677777644
Q ss_pred CCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC---EEEEecCC-CCCC
Q 040300 424 PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD---IYLIDEPS-AYLD 499 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~---lllLDEPt-~~LD 499 (605)
....+|+.++...... .........+.+ .++ ..++.+.+||++|||+++.+|+ +|++|||| ++||
T Consensus 86 ~~~~Ltv~Dt~g~~~~--~~~~~~~~~i~~------~i~---~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~ 154 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDA--VDNSNCWQPVID------YID---SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK 154 (418)
T ss_dssp -CEEEEEEECC-------------CHHHHH------HHH---HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCC
T ss_pred cccceeeeechhhhhh--ccchhhHHHHHH------HHH---HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCC
Confidence 3333444433211100 000000011111 111 2456677889999999999999 99999999 6999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFI 529 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~ 529 (605)
+... .+++++. .+.++|+|.|-.+
T Consensus 155 ~~d~----~~lk~L~--~~v~iIlVinK~D 178 (418)
T 2qag_C 155 PLDI----EFMKRLH--EKVNIIPLIAKAD 178 (418)
T ss_dssp HHHH----HHHHHHT--TTSEEEEEEESTT
T ss_pred HHHH----HHHHHHh--ccCcEEEEEEccc
Confidence 8763 4555553 2677888877443
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-13 Score=128.23 Aligned_cols=138 Identities=17% Similarity=0.062 Sum_probs=73.8
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCC-hhhhhh--hhccchhhhhH-HHHHHHHHHHhhccccccc
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPD-WQEILT--YFRGSELQNYF-TRILEDNLKAIIKPQYVDH 175 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~-~~~~~~--~~~g~~l~~~~-~~~~~~~~~~~~~~q~~~~ 175 (605)
+.+|++++|+|+|||||||++++|+|. |+.|.+....+ +..... ...+...+... .....+.+..... .
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-----~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAG-----R 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHH-----H
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHH-----H
Confidence 468999999999999999999999998 67786532111 100000 00010011100 0001111100000 0
Q ss_pred chhhhhchhhhhcCchHHHHHHHHHHhhcCCchhh--cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 040300 176 IPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI--DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRL 253 (605)
Q Consensus 176 ~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~--dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~ 253 (605)
... .+. ... ++.++..+++..+. +.++..+|+|++|++++||++.++|+++ +|+..+.
T Consensus 79 ~~~--~~~-~~~---------~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~ 138 (191)
T 1zp6_A 79 YAK--EGY-FVI---------LDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVA 138 (191)
T ss_dssp HHH--TSC-EEE---------ECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHH
T ss_pred Hhc--cCC-eEE---------EeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHH
Confidence 000 000 000 00011112333222 4567789999999999999999999876 6888777
Q ss_pred HHHHHHHHhhc
Q 040300 254 KAAQVVRSLLR 264 (605)
Q Consensus 254 ~~~~~i~~l~~ 264 (605)
.+.+.++.+..
T Consensus 139 ~~~~~~~~l~~ 149 (191)
T 1zp6_A 139 DLHSQFADLGA 149 (191)
T ss_dssp HHHHHTTCCGG
T ss_pred HHHHHHhccCc
Confidence 77766665543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-12 Score=120.92 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=39.9
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhcCCcEEEEEecCHh
Q 040300 234 NAEIYMFDEPSS-YLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLS 277 (605)
Q Consensus 234 ~p~vlllDEPts-~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~ 277 (605)
+|++|+||||++ ++|+..+..+.++|.+..++++++|++||...
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 899999999985 89999999999999988777999999999763
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-13 Score=153.75 Aligned_cols=53 Identities=9% Similarity=0.268 Sum_probs=43.0
Q ss_pred HHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhhcC--CcEEEEEecCHhH
Q 040300 226 AIAVVAVQNAEIYMFDEP------SSYLDVKQRLKAAQVVRSLLRP--NSYVIVVEHDLSV 278 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEP------ts~LD~~~r~~~~~~i~~l~~~--g~tvivvsHdl~~ 278 (605)
.++.+....|+++|+||| |++||+..+..+.++++++.+. +.++++++||++.
T Consensus 138 ~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 138 TLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp EEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred HHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 334444568999999999 9999999999999999997543 6789999999763
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.7e-13 Score=141.46 Aligned_cols=168 Identities=14% Similarity=0.117 Sum_probs=99.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeE--EEEEecCCCCHHHHHHHHHcCCCCCeeeeec---cccCcceeEeecCcCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQI--IVMLGENGTGKTTFIRMLAGLLKPDSVEDSD---VEIPEFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~gei--i~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~---~~~~~~~i~y~~q~~~ 423 (605)
++.|++. . +.+++|++.+| ++ ++|+||||||||||+++|+|+.- .|.... .......++|++|...
T Consensus 22 ~~~y~~~-~-L~~vsl~i~~G-----ei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 22 HVGFDSL-P-DQLVNKSVSQG-----FCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp CC-CC---C-HHHHHHSCC-C-----CEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEECCe-e-cCCCceEecCC-----CeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc
Confidence 4556543 2 67777777776 78 99999999999999999999842 121100 0011235899999765
Q ss_pred CCCcCcHHHHHHhhhccC----CCC-----HHHHHHHHhhc-CCc----hhhccCc-----------CcCChhHHHHHHH
Q 040300 424 PKFQSTVRHLLHQKIRDS----YTH-----PQFVSDVMKPL-LIE----QLMDQEV-----------VNLSGGELQRVAL 478 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~~----~~~-----~~~~~~~l~~l-~l~----~~~~~~~-----------~~LSGGe~QRvai 478 (605)
.....|+.+++....... +.. .....+.+... ++. ...+..+ ..|+-.+ +.|
T Consensus 93 l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---iei 169 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVT 169 (427)
T ss_dssp CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHH
T ss_pred cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHH
Confidence 433455544432110000 000 01222334433 332 1122221 2456555 799
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q 040300 479 CLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528 (605)
Q Consensus 479 A~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~ 528 (605)
+++|..+++++++|||+..|.+.....+.+.|++-+...|.+|+.+|.|-
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 99999999999999999999999999999999974456799999999763
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.2e-12 Score=117.02 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=36.5
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcE-EEEEecC
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY-VIVVEHD 275 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~t-vivvsHd 275 (605)
++.+|++|++|||++ ++...+..++++|..+.+.|++ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 357899999999998 6665588899999998877888 8888884
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-12 Score=137.46 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=82.5
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCC-CceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPN-LGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK 178 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~ 178 (605)
+.+|++++|+||||||||||+++|+|.++|+ .|++.. .+..+. +. .. ....++.+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~-----------~e~~~e-~~-------~~--~~~~~v~Q~-- 189 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT-----------IEDPIE-YV-------FK--HKKSIVNQR-- 189 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEE-----------EESSCC-SC-------CC--CSSSEEEEE--
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEE-----------ecccHh-hh-------hc--cCceEEEee--
Confidence 4789999999999999999999999999987 788731 000000 00 00 000011100
Q ss_pred hhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 040300 179 AVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV 258 (605)
Q Consensus 179 ~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~ 258 (605)
.+|+. +..| +.+|+++|..+|+++++|||+ |+.+.. .+
T Consensus 190 ------------------------~~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~ 227 (372)
T 2ewv_A 190 ------------------------EVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TA 227 (372)
T ss_dssp ------------------------EBTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HH
T ss_pred ------------------------ecCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HH
Confidence 12221 2344 469999999999999999999 776533 34
Q ss_pred HHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 259 VRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 259 i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
++.. ..|.+|+.++|+.+ +..++|+++.|
T Consensus 228 l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 228 LRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp HHHH-TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred HHHH-hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 4443 45899999999966 66678887666
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-11 Score=120.76 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=35.2
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHh
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDY 281 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~ 281 (605)
++..++++||| ||+..+..+.+.+. ++.+|++++|+++++..
T Consensus 104 ~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 104 VLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKIELDR 145 (219)
T ss_dssp HHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHHHHHH
T ss_pred HHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHHHHHH
Confidence 33457999999 99999888877664 58999999999999876
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=114.02 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=64.8
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHH
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVM 452 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l 452 (605)
+|+.++|+||||+|||||+++|++...+. |. ++.|++.... ...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~---------~~~~~~~~~~--~~~------------------------ 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK---------NAAYIDAASM--PLT------------------------ 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC---------CEEEEETTTS--CCC------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC---------cEEEEcHHHh--hHH------------------------
Confidence 34789999999999999999999988763 31 2344443210 000
Q ss_pred hhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcE-EEEEecC
Q 040300 453 KPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKT-AFVVEHD 527 (605)
Q Consensus 453 ~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t-iivvsHD 527 (605)
+++.+|++|+||||++ +|...+..+.++|+++.. .|++ +|++||.
T Consensus 79 ----------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~ 124 (149)
T 2kjq_A 79 ----------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEY 124 (149)
T ss_dssp ----------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESS
T ss_pred ----------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCC
Confidence 2356899999999998 666568889999998754 4777 8888884
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-11 Score=127.98 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=44.0
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHhhcC-CcEEEEEecCH-------------------hHHH
Q 040300 233 QNAEIYMFDEPSSYLDVKQR------------LKAAQVVRSLLRP-NSYVIVVEHDL-------------------SVLD 280 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r------------~~~~~~i~~l~~~-g~tvivvsHdl-------------------~~l~ 280 (605)
.+|+++++||||+.+|.... ..+++.|++++++ +.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996322 4567778888765 99999999983 2356
Q ss_pred hhcCEEEEEeC
Q 040300 281 YLSDFICCLYG 291 (605)
Q Consensus 281 ~~~D~i~vl~g 291 (605)
+++|.++.|+.
T Consensus 352 ~~ad~vl~L~~ 362 (400)
T 3lda_A 352 YSSTTRLGFKK 362 (400)
T ss_dssp HHCSEEEEEEE
T ss_pred HhcceEEEEEe
Confidence 67888888864
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-11 Score=130.67 Aligned_cols=128 Identities=18% Similarity=0.125 Sum_probs=89.4
Q ss_pred eeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccC-------cceeEeec-CcCCCCCcCcHH
Q 040300 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIP-------EFNVSYKP-QKISPKFQSTVR 431 (605)
Q Consensus 360 ~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~-------~~~i~y~~-q~~~~~~~~tv~ 431 (605)
++++|.+.+| ++++|+||||||||||+++|+|+++|++|.+...... ...++|++ |+..
T Consensus 166 ~~l~~~i~~G-----~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~-------- 232 (361)
T 2gza_A 166 SFLRRAVQLE-----RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAK-------- 232 (361)
T ss_dssp HHHHHHHHTT-----CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccc--------
Confidence 5677777666 6899999999999999999999999999987411100 11233333 1100
Q ss_pred HHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040300 432 HLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK 511 (605)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 511 (605)
..++++..++..|+.++.++|+.+++|||.. .++.++|+
T Consensus 233 ----------------------------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~ 271 (361)
T 2gza_A 233 ----------------------------------EEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFIN 271 (361)
T ss_dssp ----------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHH
T ss_pred ----------------------------------cccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHH
Confidence 0124455688999999999999999999986 24556777
Q ss_pred HHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 512 RFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 512 ~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
.+. ....|++.++|+.. +...+||++.+..
T Consensus 272 ~l~-~g~~~~l~t~H~~~-~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 272 VAA-SGHGGSITSCHAGS-CELTFERLALMVL 301 (361)
T ss_dssp HHH-TTCCSCEEEEECSS-HHHHHHHHHHHHT
T ss_pred HHh-cCCCeEEEEECCCC-HHHHHHHHHHHHh
Confidence 763 33457899999965 7778999988764
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-13 Score=129.15 Aligned_cols=144 Identities=16% Similarity=0.164 Sum_probs=77.5
Q ss_pred cEEEEECCCCChHHHHHHHHhcCCCCC---CceeeCCCChhhhhhhhccchhhhhH---HHHHHHHHHHhhcccccccch
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKLKPN---LGRFNNPPDWQEILTYFRGSELQNYF---TRILEDNLKAIIKPQYVDHIP 177 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~g~~l~~~~---~~~~~~~~~~~~~~q~~~~~~ 177 (605)
++++|+|+||||||||++.|+|+++|+ .|.|... |..+.++. ...+.. ........++.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d-----------g~~i~~~~~~~~d~~r~-~~ig~~~~~~~~~~ 70 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH-----------AHGDFEIDKEGKDSWKI-YNSGADVVIASPVK 70 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----------------------CHHHHH-HHHTCEEEEECSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc-----------CcccccCCccchhHHHH-HhcCCceEEECCCc
Confidence 589999999999999999999999998 7887532 11111110 000000 01110011111111
Q ss_pred hhhhchhhhhcCchHHHHHHHHHHhh-c-CCchhhcccCCCCChHHHHHHHHHHHHccCCCEE-------EEeCCC---C
Q 040300 178 KAVQGNVGQVLDQKDERDMKADLCTD-L-DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIY-------MFDEPS---S 245 (605)
Q Consensus 178 ~~~~~~v~~~l~~~~~~~~~~~~l~~-l-~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vl-------llDEPt---s 245 (605)
..+ +.+ ........+.++++. + +++.... ..|||||+||++||||++.+|+++ +=|.|. .
T Consensus 71 ~~~---i~~--~~~~~~a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~ 142 (171)
T 2f1r_A 71 LAF---IRR--VSEEEGNDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK 142 (171)
T ss_dssp EEE---EEE--CCHHHHTCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred EEE---Eec--CChhhhhCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence 111 000 000101134445544 3 4443332 249999999999999999999874 225543 2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCc
Q 040300 246 YLDVKQRLKAAQVVRSLLRPNS 267 (605)
Q Consensus 246 ~LD~~~r~~~~~~i~~l~~~g~ 267 (605)
.+|......++++|.+...+|.
T Consensus 143 ~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 143 WFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp EECTTCHHHHHHHHHHHHTC--
T ss_pred ccCcccHHHHHHHHHHHHhccC
Confidence 3455556678888877666554
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-12 Score=139.74 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=90.6
Q ss_pred eeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeecccc--CcceeEeecCcCCCCCcCcHHHHHHh
Q 040300 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI--PEFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 359 l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~--~~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
-.+++|++..| ++++|+|+||||||||+++|+|..+ . +.+... ....++++.+.... ..++.+....
T Consensus 147 ~~~i~lelk~g-----~~VgLVG~~gAGKSTLL~~Lsg~~~-~---i~~~~ftTl~p~~G~V~~~~~~--~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLI-----ADVGLVGYPNAGKSSLLAAMTRAHP-K---IAPYPFTTLSPNLGVVEVSEEE--RFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCS-----CSEEEECCGGGCHHHHHHHHCSSCC-E---ECCCTTCSSCCEEEEEECSSSC--EEEEEECCCC
T ss_pred EeeeeeEEcCC-----CEEEEECCCCCcHHHHHHHHHcCCc-c---ccCcccceecceeeEEEecCcc--eEEEEecccc
Confidence 35788988888 6899999999999999999999843 1 110010 11234555443100 0011110000
Q ss_pred --hhc-cCCCCHHHH------HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040300 437 --KIR-DSYTHPQFV------SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAA 507 (605)
Q Consensus 437 --~~~-~~~~~~~~~------~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~ 507 (605)
... .......+. ..++..+++. ++++.+||+|++|++++|++|+..|.+++| |.+|...+ ...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~ 287 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAV 287 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHH
Confidence 000 000011111 1223333443 567889999999999999999999999999 99999877 444
Q ss_pred HHHHHHHhcCCcEEEEEec
Q 040300 508 KVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 508 ~~l~~l~~~~g~tiivvsH 526 (605)
..+.+...+.+.++++||.
T Consensus 288 ~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 288 KALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHhcCCeEEEEEC
Confidence 5555554555777777663
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.5e-12 Score=135.30 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHHccCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhH
Q 040300 217 LSGGELQRFAIAVVAVQNAE---IYMFDEPS-SYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSV 278 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~---vlllDEPt-s~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~ 278 (605)
++.+++||++||++++.+|+ +++||||| ++||+... .+++.|.. +.+||+|.|..+.
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTTS
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcccC
Confidence 45567789999999999999 99999999 69998763 45566654 7888888887554
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-12 Score=140.50 Aligned_cols=147 Identities=16% Similarity=0.098 Sum_probs=91.7
Q ss_pred eeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec--ccc-------------CcceeEeecCcCCC
Q 040300 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD--VEI-------------PEFNVSYKPQKISP 424 (605)
Q Consensus 360 ~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~--~~~-------------~~~~i~y~~q~~~~ 424 (605)
++++|++..| ++++|+|+||||||||+++|+|+++|++|++.. ... ....++|++|+...
T Consensus 284 ~~Isl~i~~G-----eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~ 358 (503)
T 2yhs_A 284 EPLNVEGKAP-----FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGA 358 (503)
T ss_dssp CCCCCCSCTT-----EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTC
T ss_pred CCceeeccCC-----eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCc
Confidence 4566766655 789999999999999999999999999888751 111 02348899998654
Q ss_pred CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc-cCC-CEEEEecCCCCCCHHH
Q 040300 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG-KPA-DIYLIDEPSAYLDSEQ 502 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~-~~p-~lllLDEPt~~LD~~~ 502 (605)
.+..++++++.......+. . -+++..|..+.....+.+| +|++.+++++. ..| .+||...||+|.|.-
T Consensus 359 ~p~~tV~e~l~~a~~~~~D---v--VLIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al- 428 (503)
T 2yhs_A 359 DSASVIFDAIQAAKARNID---V--LIADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV- 428 (503)
T ss_dssp CHHHHHHHHHHHHHHTTCS---E--EEECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH-
T ss_pred CHHHHHHHHHHHHHhcCCC---E--EEEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH-
Confidence 4456777766432211110 0 0122222221111122334 37888888764 456 455555599887653
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEec
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsH 526 (605)
+.++.|....+.|.+++||
T Consensus 429 -----~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 429 -----SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp -----HHHHHHHHHTCCSEEEEEC
T ss_pred -----HHHHHHHhhcCCCEEEEEc
Confidence 3345554445899999999
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-12 Score=134.88 Aligned_cols=147 Identities=17% Similarity=0.127 Sum_probs=79.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhh--HHH--HHHHHHHHhhcccccccc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNY--FTR--ILEDNLKAIIKPQYVDHI 176 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~--~~~--~~~~~~~~~~~~q~~~~~ 176 (605)
.+|++++|+|+|||||||+++.|+|.++|+.|++. +.|.+.... ..+ .....+...+.+|.....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~-----------l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~ 195 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV-----------IAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGAD 195 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE-----------EEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE-----------EEeecccccchHHHHHHHHHHcCceEEeccccCC
Confidence 58999999999999999999999999999999874 112211110 000 011111111222222222
Q ss_pred hhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q 040300 177 PKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAA 256 (605)
Q Consensus 177 ~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~ 256 (605)
|.. ++.+.+........-.-+++..|+.+..++.+.+|| .|++++..++.+++||.+|. .| +.
T Consensus 196 p~~---~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~------~~ 258 (328)
T 3e70_C 196 PAA---VAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-NA------IV 258 (328)
T ss_dssp HHH---HHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-TH------HH
T ss_pred HHH---HHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HH------HH
Confidence 211 111111000000000001222344333333344444 38899999999999996554 33 44
Q ss_pred HHHHHhhc-CCcEEEEEecC
Q 040300 257 QVVRSLLR-PNSYVIVVEHD 275 (605)
Q Consensus 257 ~~i~~l~~-~g~tvivvsHd 275 (605)
+.++.+.+ .+.++|++||.
T Consensus 259 ~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 259 EQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHHHHSCCCEEEEECG
T ss_pred HHHHHHHHhcCCCEEEEeCc
Confidence 45555553 48999999994
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-14 Score=135.04 Aligned_cols=66 Identities=9% Similarity=-0.019 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecC-HhHHHhhcCEEE
Q 040300 218 SGGELQRFAIAV------VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHD-LSVLDYLSDFIC 287 (605)
Q Consensus 218 SGGe~QRvaIA~------aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHd-l~~l~~~~D~i~ 287 (605)
|+|++|++.++. +++.+|....+|+ +||+..+.. ++.+..+.+.+.+||.+||. ++.++.+||+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh
Confidence 888888888887 8888888888884 899988888 88888886667899999999 999999999997
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.5e-12 Score=132.18 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=78.0
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhh-----c-----cCCC
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKI-----R-----DSYT 443 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~-----~-----~~~~ 443 (605)
+.+++|+|++|||||||++.|++++.+. |. ....+.+++|+.. .+..+.++++.... . ....
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~------~~~~~~iv~~D~f-~~~~~~~~~l~~~~~~~~l~~~~g~p~a~ 102 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG------GEKSIGYASIDDF-YLTHEDQLKLNEQFKNNKLLQGRGLPGTH 102 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH-HG------GGSCEEEEEGGGG-BCCHHHHHHHHHHTTTCGGGSSSCSTTSB
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhc-CC------CCceEEEeccccc-cCChHHHHHHhccccccchhhhccCcchh
Confidence 4689999999999999999999998753 20 0112344488753 34446666543211 0 0011
Q ss_pred CHHHHHHHHhhcCCc--------hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040300 444 HPQFVSDVMKPLLIE--------QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501 (605)
Q Consensus 444 ~~~~~~~~l~~l~l~--------~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~ 501 (605)
+.....+.++.+.-. ......-..+||||+||+++|++.+.+|+|+|+|||++++|+.
T Consensus 103 d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 103 DMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred HHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 233445566655332 1123445789999999999984433389999999999999985
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.11 E-value=9.4e-11 Score=122.83 Aligned_cols=139 Identities=16% Similarity=0.154 Sum_probs=71.3
Q ss_pred EEEEECCCCChHHHHHHHHhc-CCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhch
Q 040300 105 VLGLVGTNGIGKSTALKILAG-KLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGN 183 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G-~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 183 (605)
.+.|.||||+||||++++|+| ++.|+.|.+.. .|..+..... ........++.. .+ .+...
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~-----------~~~~~~~~~~----~~~~~~~~~~~~-~~--~~~~~ 99 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI-----------DVRQFVTASN----RKLELNVVSSPY-HL--EITPS 99 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------------------------CCEECSS-EE--EECCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEe-----------cceeeccccc----ccceeeeecccc-eE--EecHh
Confidence 499999999999999999999 77888887631 1111110000 000000001100 00 00000
Q ss_pred hhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 040300 184 VGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263 (605)
Q Consensus 184 v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~ 263 (605)
-.........++.+.++....++.... +||| +..+|+++|+|||++ ||..+...+.+.|.+..
T Consensus 100 ~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 100 DMGNNDRIVIQELLKEVAQMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ----CCHHHHHHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred hcCCcchHHHHHHHHHHHHhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 000000001222333333333333222 5677 788999999999999 99999999999998865
Q ss_pred cCCcEEEEEecCHhHH
Q 040300 264 RPNSYVIVVEHDLSVL 279 (605)
Q Consensus 264 ~~g~tvivvsHdl~~l 279 (605)
. +.++|++||+...+
T Consensus 163 ~-~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 163 K-NIRLIMVCDSMSPI 177 (354)
T ss_dssp T-TEEEEEEESCSCSS
T ss_pred C-CCEEEEEeCCHHHH
Confidence 4 78999999997643
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=121.93 Aligned_cols=138 Identities=12% Similarity=0.201 Sum_probs=76.8
Q ss_pred EEEEecCCCCHHHHHHHHHc-CCCCCeeeeec--ccc-----CcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 377 IVMLGENGTGKTTFIRMLAG-LLKPDSVEDSD--VEI-----PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~G-l~~p~~G~i~~--~~~-----~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
+.|.||||+|||||+++|+| +..|+.|.+.. ... ....+++++|........+- .........
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 109 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD---------MGNNDRIVI 109 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------------CCHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh---------cCCcchHHH
Confidence 78999999999999999999 78888876531 000 11235566654211111000 000111112
Q ss_pred HHHHhh----cCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 040300 449 SDVMKP----LLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524 (605)
Q Consensus 449 ~~~l~~----l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivv 524 (605)
.+.++. ..+.... +||| +..+|+++|||||++ ||...+..+.+.|++.. .+.++|++
T Consensus 110 ~~~i~~~~~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~ 170 (354)
T 1sxj_E 110 QELLKEVAQMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMV 170 (354)
T ss_dssp HHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEE
T ss_pred HHHHHHHHHhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEE
Confidence 222222 2222221 5677 788999999999999 99999999999999863 37899999
Q ss_pred ecCHHHH-HhhcCEEEEEe
Q 040300 525 EHDFIMA-TYLADRVIVYE 542 (605)
Q Consensus 525 sHD~~~~-~~~adrviv~~ 542 (605)
||+...+ ..+.+|..+++
T Consensus 171 t~~~~~l~~~l~sR~~~~~ 189 (354)
T 1sxj_E 171 CDSMSPIIAPIKSQCLLIR 189 (354)
T ss_dssp ESCSCSSCHHHHTTSEEEE
T ss_pred eCCHHHHHHHHHhhceEEe
Confidence 9986432 23445544443
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=5.3e-12 Score=135.95 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=54.5
Q ss_pred HHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhcCCcEEEEEe-cCHh
Q 040300 200 LCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRS-LLRPNSYVIVVE-HDLS 277 (605)
Q Consensus 200 ~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~-l~~~g~tvivvs-Hdl~ 277 (605)
++..+++. ++++.+||+|++|++++|++|+..|.++++ |.+|+..+ ...+.+.+ +.+.+.++++|| |.-+
T Consensus 239 lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 239 LLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGA 310 (416)
T ss_dssp EEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred hhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCcc
Confidence 44445554 567889999999999999999999999999 99998766 33444444 434476777666 4444
Q ss_pred HHHhhcC
Q 040300 278 VLDYLSD 284 (605)
Q Consensus 278 ~l~~~~D 284 (605)
-++.+.+
T Consensus 311 gi~eL~~ 317 (416)
T 1udx_A 311 GLPALKE 317 (416)
T ss_dssp THHHHHH
T ss_pred CHHHHHH
Confidence 4444433
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-11 Score=124.42 Aligned_cols=200 Identities=14% Similarity=0.062 Sum_probs=116.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCCCccccc
Q 040300 245 SYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRF 324 (605)
Q Consensus 245 s~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~~e~~~~ 324 (605)
.-+|... +.+.++++. .++|.++|+++.+..++|++..+..+.... ...+..+.+.
T Consensus 20 ~~~~~~~---l~~~l~~l~---~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~----~~~~~~~~~~-------------- 75 (295)
T 1ls1_A 20 GRITEED---LKATLREIR---RALMDADVNLEVARDFVERVREEALGKQVL----ESLTPAEVIL-------------- 75 (295)
T ss_dssp CSCCHHH---HHHHHHHHH---HHHHHTTCCHHHHHHHHHHHHHHHHHTTTT----TCSCHHHHHH--------------
T ss_pred CCCCHHH---HHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHcccccc----ccCCcHHHHH--------------
Confidence 3466654 445555554 689999999999999999886552111000 0000000000
Q ss_pred ccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeee
Q 040300 325 RDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404 (605)
Q Consensus 325 r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~ 404 (605)
....++. .+.|+... .+++|+ + |++++++|+||+||||+++.|+|.+.+..|+
T Consensus 76 ----------------~~~~~~l-~~~~~~~~---~~i~~~--~-----~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~ 128 (295)
T 1ls1_A 76 ----------------ATVYEAL-KEALGGEA---RLPVLK--D-----RNLWFLVGLQGSGKTTTAAKLALYYKGKGRR 128 (295)
T ss_dssp ----------------HHHHHHH-HHHTTSSC---CCCCCC--S-----SEEEEEECCTTTTHHHHHHHHHHHHHHTTCC
T ss_pred ----------------HHHHHHH-HHHHCCCC---ceeecC--C-----CeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 0011122 34444221 345554 3 4799999999999999999999999877665
Q ss_pred eeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 405 DSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 405 i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
+ .++..+... .....++ ..+.+..++.-+... ...+-.+.+|.+|+.+...
T Consensus 129 v----------~l~~~d~~~--~~~~~ql---------------~~~~~~~~l~~~~~~--~~~~p~~l~~~~l~~~~~~ 179 (295)
T 1ls1_A 129 P----------LLVAADTQR--PAAREQL---------------RLLGEKVGVPVLEVM--DGESPESIRRRVEEKARLE 179 (295)
T ss_dssp E----------EEEECCSSC--HHHHHHH---------------HHHHHHHTCCEEECC--TTCCHHHHHHHHHHHHHHH
T ss_pred E----------EEecCCccc--HhHHHHH---------------HHhcccCCeEEEEcC--CCCCHHHHHHHHHHHHHhC
Confidence 4 233222110 0111111 012233344322100 0123345679999999889
Q ss_pred CCCEEEEecC-CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 040300 485 PADIYLIDEP-SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 485 ~p~lllLDEP-t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsH 526 (605)
++|++|+||| +.++|.....++.++++.+ ....+++++..
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~--~~~~~~lv~~~ 220 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVL--GPDEVLLVLDA 220 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHH--CCSEEEEEEEG
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhc--CCCEEEEEEeC
Confidence 9999999999 9999998888888877765 23556666654
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.08 E-value=8.4e-11 Score=123.89 Aligned_cols=111 Identities=20% Similarity=0.126 Sum_probs=68.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCC-CCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLK-PNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
.+|++++|+|+||+|||||+|+|+|... |..|.+...... .... -.... ..+.+|....++..
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~-g~~t-t~~~~--------------i~~v~q~~~l~dtp 276 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGL-GQHT-TTAAR--------------LYHFPHGGDVIDSP 276 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------CCCE--------------EEECTTSCEEEECH
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCC-Cccc-eEEEE--------------EEEECCCCEecCcc
Confidence 3799999999999999999999999999 999987521000 0000 00000 00111111001000
Q ss_pred hhchhhh----hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 180 VQGNVGQ----VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 180 ~~~~v~~----~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.+.+ .+........+.++++.+++..+.++.+.+|| ||+||++||+++
T Consensus 277 ---gv~e~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 277 ---GVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp ---HHHTCCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred ---cHHHhhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 1111 01223345567788999999999999999999 999999999864
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.4e-13 Score=128.72 Aligned_cols=138 Identities=14% Similarity=0.150 Sum_probs=77.3
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHH----hhhccCCCCHHH
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLH----QKIRDSYTHPQF 447 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~----~~~~~~~~~~~~ 447 (605)
.+|++++|+||||||||||+++|+|+++|+ |. .+++++++... +..+..+... ......+. ...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~---------~~g~v~~d~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~ 87 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GL---------PAEVVPMDGFH-LDNRLLEPRGLLPRKGAPETFD-FEG 87 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TC---------CEEEEESGGGB-CCHHHHGGGTCGGGTTSGGGBC-HHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CC---------ceEEEecCCCc-CCHHHHHHhcccccCCCCchhh-HHH
Confidence 356899999999999999999999999864 21 23444443211 1111111110 00011111 111
Q ss_pred HHHHHhhcC----Cc-hhhccCcCcCChhHHHHHHHH-HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q 040300 448 VSDVMKPLL----IE-QLMDQEVVNLSGGELQRVALC-LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521 (605)
Q Consensus 448 ~~~~l~~l~----l~-~~~~~~~~~LSGGe~QRvaiA-~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 521 (605)
..+.+..+. +. ...++ ...+|+||+||+++| ++++.++.++++|||.. ..+.++ --.+
T Consensus 88 ~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~----~d~~ 151 (208)
T 3c8u_A 88 FQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAI----WDVS 151 (208)
T ss_dssp HHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGT----CSEE
T ss_pred HHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHh----cCEE
Confidence 222333221 11 12222 345799999999998 77788888878888741 111221 2367
Q ss_pred EEEecCHHH-HHhhcCE
Q 040300 522 FVVEHDFIM-ATYLADR 537 (605)
Q Consensus 522 ivvsHD~~~-~~~~adr 537 (605)
++++++.+. +.++..|
T Consensus 152 i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 152 IRLEVPMADLEARLVQR 168 (208)
T ss_dssp EEECCCHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHH
Confidence 788888775 4555555
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-12 Score=144.95 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=93.7
Q ss_pred eeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc-c--C-cceeEeecCcCCCCCcCcHHHH
Q 040300 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE-I--P-EFNVSYKPQKISPKFQSTVRHL 433 (605)
Q Consensus 360 ~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~-~--~-~~~i~y~~q~~~~~~~~tv~~~ 433 (605)
.++++.+..| ++++|+||||||||||+++|+|+++|++|.+. +.. . + ...+++..|........+..++
T Consensus 251 ~~l~~~v~~g-----~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 251 AYLWLAIEHK-----FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHTT-----CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHhCC-----CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 3444544444 78999999999999999999999999998764 211 1 1 1124444432111111233333
Q ss_pred HHhhhcc--------CCCCH---------------------HHHHHHHhhc-----CCch----hhc---cCcCcCChhH
Q 040300 434 LHQKIRD--------SYTHP---------------------QFVSDVMKPL-----LIEQ----LMD---QEVVNLSGGE 472 (605)
Q Consensus 434 ~~~~~~~--------~~~~~---------------------~~~~~~l~~l-----~l~~----~~~---~~~~~LSGGe 472 (605)
+....+. ..... ..+.++++++ ++.. .++ .....+||||
T Consensus 326 l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~ 405 (511)
T 2oap_1 326 LRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNT 405 (511)
T ss_dssp HHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSC
T ss_pred HHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCC
Confidence 2211110 00000 0122233332 2221 112 3345689999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE--EecCHHHHHhhcC
Q 040300 473 LQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFV--VEHDFIMATYLAD 536 (605)
Q Consensus 473 ~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiiv--vsHD~~~~~~~ad 536 (605)
+||+++|. + | |+|||+..+..+++.|.++. ..+.|+++ +||+++++...|+
T Consensus 406 ~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~-~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 406 RLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWD-PKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEE-TTTTEEEECSCCTHHHHHHHHHT
T ss_pred ceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEc-ccCCEEEEcccHHHHHHHHHHcC
Confidence 99987651 1 7 99999988877777777763 34788875 8999999988774
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.8e-10 Score=109.31 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=46.7
Q ss_pred cCCCEEEEecCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH--------HHhhcCEEEEEeC
Q 040300 484 KPADIYLIDEPSAYL--DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIM--------ATYLADRVIVYEG 543 (605)
Q Consensus 484 ~~p~lllLDEPt~~L--D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~--------~~~~adrviv~~g 543 (605)
.+|+++++|+|++.+ |+..+..++..|.+++++.|.|||+++|.... +.++||.|+.++.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 66555566666666666779999999998665 4678999999863
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-12 Score=125.53 Aligned_cols=144 Identities=21% Similarity=0.218 Sum_probs=77.7
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCC---CceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccc
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPN---LGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHI 176 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~ 176 (605)
..+|+++||+|+||||||||+++|+|+++|+ .|.+.. .|..+.. ....++.. + + . ...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~-----------d~~~~~~----~~~~~~~~-~-~-~-~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM-----------DGFHLDN----RLLEPRGL-L-P-R-KGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEES-----------GGGBCCH----HHHGGGTC-G-G-G-TTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEec-----------CCCcCCH----HHHHHhcc-c-c-c-CCC
Confidence 3689999999999999999999999999864 455531 1111100 00000000 0 0 0 001
Q ss_pred hhhhhchhhhhcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHHHHH
Q 040300 177 PKAVQGNVGQVLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIA-VVAVQNAEIYMFDEPSSYLDVKQRLK 254 (605)
Q Consensus 177 ~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA-~aL~~~p~vlllDEPts~LD~~~r~~ 254 (605)
+.. +........+..+...-++. ...++. ..+|+||+||+++| ++++.++.++++|||.-
T Consensus 80 ~~~--------~~~~~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------- 141 (208)
T 3c8u_A 80 PET--------FDFEGFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------- 141 (208)
T ss_dssp GGG--------BCHHHHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG---------
T ss_pred Cch--------hhHHHHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh---------
Confidence 110 11000111111111110121 123333 34799999999998 88888888888888731
Q ss_pred HHHHHHHhhcCCcEEEEEecCHhH-HHhhcCE
Q 040300 255 AAQVVRSLLRPNSYVIVVEHDLSV-LDYLSDF 285 (605)
Q Consensus 255 ~~~~i~~l~~~g~tvivvsHdl~~-l~~~~D~ 285 (605)
..+..+ --.+++++++.+. +..+..|
T Consensus 142 --~~l~~~---~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 142 --RDLTAI---WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp --GGGGGT---CSEEEEECCCHHHHHHHHHHH
T ss_pred --HHHHHh---cCEEEEEeCCHHHHHHHHHHH
Confidence 112222 2468899999887 4445444
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.7e-11 Score=126.72 Aligned_cols=57 Identities=11% Similarity=0.030 Sum_probs=48.1
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhcCCcEEEEEecC
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRS-LLRPNSYVIVVEHD 275 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~-l~~~g~tvivvsHd 275 (605)
.|+-.+ +.|+++|..++.|+++|||+..|.+.....+.+.|++ |...|..|+.++.|
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 466555 7999999999999999999999999999999999986 77789999999975
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-12 Score=124.69 Aligned_cols=125 Identities=14% Similarity=0.173 Sum_probs=75.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCCC---eeeee--ccc---cC-----c---ceeE----eecCcCCCCCcCcHHHHH
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKPD---SVEDS--DVE---IP-----E---FNVS----YKPQKISPKFQSTVRHLL 434 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p~---~G~i~--~~~---~~-----~---~~i~----y~~q~~~~~~~~tv~~~~ 434 (605)
++++|+|+||||||||+++|+|+++|+ .|.+. +.. .. . ..++ +++|+.....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i-------- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI-------- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--------
Confidence 579999999999999999999999998 78764 111 10 0 1244 4555432110
Q ss_pred HhhhccCCCCHH---HHHHHHhh-c-CCchhhccCcCcCChhHHHHHHHHHHHccCCCEE-------EEecCCC---CCC
Q 040300 435 HQKIRDSYTHPQ---FVSDVMKP-L-LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIY-------LIDEPSA---YLD 499 (605)
Q Consensus 435 ~~~~~~~~~~~~---~~~~~l~~-l-~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ll-------lLDEPt~---~LD 499 (605)
.. .... ...++++. + +++... ...|||||+||++||||+..+|+++ +=|.|.. -+|
T Consensus 75 ----~~--~~~~~~a~l~~~i~~~l~g~dt~i---~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~ 145 (171)
T 2f1r_A 75 ----RR--VSEEEGNDLDWIYERYLSDYDLVI---TEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFR 145 (171)
T ss_dssp ----EE--CCHHHHTCHHHHHHHHTTTCSEEE---EESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEEC
T ss_pred ----ec--CChhhhhCHHHHHHhhCCCCCEEE---ECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccC
Confidence 00 0011 12333333 3 333222 2249999999999999999998874 2345432 234
Q ss_pred HHHHHHHHHHHHHHHhc
Q 040300 500 SEQRIVAAKVIKRFILH 516 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~ 516 (605)
......+.+.|.+...+
T Consensus 146 ~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 146 RDEVERIAEFILSLLRE 162 (171)
T ss_dssp TTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHhc
Confidence 44556777787666554
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-11 Score=133.86 Aligned_cols=114 Identities=18% Similarity=0.078 Sum_probs=75.9
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec--ccc----C-------cceeEe---------ecCcCCCC--C--
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD--VEI----P-------EFNVSY---------KPQKISPK--F-- 426 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~--~~~----~-------~~~i~y---------~~q~~~~~--~-- 426 (605)
+|++++|+||||||||||+++|+|++.|++|.+.. ..+ + ...+++ ++|++... .
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 45799999999999999999999999999887641 111 1 012333 33654321 1
Q ss_pred --cCcHHHHHHhhhcc-------CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 427 --QSTVRHLLHQKIRD-------SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 427 --~~tv~~~~~~~~~~-------~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
..|+.+++...... ...+...+.+.+..+++.... .+.+|||||+|| ||++|+.+|++..
T Consensus 246 Rd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 246 RDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred CCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 13666655321110 111222333467788888654 678999999999 9999999999865
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.6e-11 Score=123.47 Aligned_cols=105 Identities=14% Similarity=0.043 Sum_probs=74.8
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec-----cccC------c-ceeEeecCcCCCC-----CcCcHHHHHH-
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD-----VEIP------E-FNVSYKPQKISPK-----FQSTVRHLLH- 435 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~-----~~~~------~-~~i~y~~q~~~~~-----~~~tv~~~~~- 435 (605)
|++++|+||||+|||||+++|+ +.+|++|++.. .... . ..++|++|.+... ...|+ +++.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~ 242 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRN 242 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHH
Confidence 3689999999999999999999 99999998752 1111 1 1479999986432 34567 4331
Q ss_pred -hh--------hcc--CC-CCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHH
Q 040300 436 -QK--------IRD--SY-THPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCL 480 (605)
Q Consensus 436 -~~--------~~~--~~-~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~ 480 (605)
.. ... .. .....+.++++.++|.+ ..++++..|||.+++++.|||
T Consensus 243 ~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 243 YFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 111 11 11245788999999986 889999999999899999986
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-12 Score=126.34 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=41.3
Q ss_pred HHH-HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 227 IAV-VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 227 IA~-aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+|+ +++.+|.+++|||+|+++|..+...+.+.|..+.+. +.+.|. . ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGS--T--TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhc--c--CCceEEEECCC
Confidence 455 678888899999999999987777777777766542 234561 1 56899988853
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.8e-10 Score=113.88 Aligned_cols=122 Identities=18% Similarity=0.136 Sum_probs=78.6
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhh
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQ 181 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 181 (605)
+|++++++|+||+||||++..|+|.+.+..|++. +.+.+.+.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~-----------l~~~d~~~~~~~----------------------- 142 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL-----------LVAADTQRPAAR----------------------- 142 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE-----------EEECCSSCHHHH-----------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE-----------EecCCcccHhHH-----------------------
Confidence 7999999999999999999999999988777653 112221110000
Q ss_pred chhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHHHHHHH
Q 040300 182 GNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEP-SSYLDVKQRLKAAQVVR 260 (605)
Q Consensus 182 ~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEP-ts~LD~~~r~~~~~~i~ 260 (605)
.....+.+..++..+... ...+..+.+|.+|+.+...++|++|+||| ++++|......+.++.+
T Consensus 143 -------------~ql~~~~~~~~l~~~~~~--~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 143 -------------EQLRLLGEKVGVPVLEVM--DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp -------------HHHHHHHHHHTCCEEECC--TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred -------------HHHHHhcccCCeEEEEcC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence 000011222344322100 01234566899999998899999999999 99999887777777666
Q ss_pred HhhcCCcEEEEEe
Q 040300 261 SLLRPNSYVIVVE 273 (605)
Q Consensus 261 ~l~~~g~tvivvs 273 (605)
.+. ...+++++.
T Consensus 208 ~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 208 VLG-PDEVLLVLD 219 (295)
T ss_dssp HHC-CSEEEEEEE
T ss_pred hcC-CCEEEEEEe
Confidence 553 234444444
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.00 E-value=7.4e-10 Score=120.82 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=103.0
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHh-----------h
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ-----------K 437 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~-----------~ 437 (605)
|-+.+|+++.|.|++|+|||||+..+++...+..| ..+.|+.-+. +..++... .
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g---------~~Vl~~s~E~------s~~~l~~r~~~~~~~~~~~~ 262 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN---------ENVAIFSLEM------SAQQLVMRMLCAEGNINAQN 262 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS---------CCEEEEESSS------CHHHHHHHHHHHHHTCCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC---------CcEEEEECCC------CHHHHHHHHHHHHcCCCHHH
Confidence 45788899999999999999999999986654323 1345554332 22221110 0
Q ss_pred hcc-CCCCH--HHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCC--------HHHHH
Q 040300 438 IRD-SYTHP--QFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG--KPADIYLIDEPSAYLD--------SEQRI 504 (605)
Q Consensus 438 ~~~-~~~~~--~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~--~~p~lllLDEPt~~LD--------~~~~~ 504 (605)
+.. ..... ..+.+.++.++..++.-.....+|.+|.+ +.++.+. .+|+++++|+++...+ .....
T Consensus 263 l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~ 340 (454)
T 2r6a_A 263 LRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVS 340 (454)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHH
Confidence 011 11111 12233444443333333345689999987 4555554 6899999999999884 33446
Q ss_pred HHHHHHHHHHhcCCcEEEEEec---------C--HH--------HHHhhcCEEEEEeCC
Q 040300 505 VAAKVIKRFILHAKKTAFVVEH---------D--FI--------MATYLADRVIVYEGQ 544 (605)
Q Consensus 505 ~l~~~l~~l~~~~g~tiivvsH---------D--~~--------~~~~~adrviv~~g~ 544 (605)
.+.+.|+.++++.+.+||+++| | .. .+.+.||.|+++...
T Consensus 341 ~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 341 EISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred HHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 7788888888778999999999 3 22 567889999999743
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.99 E-value=8.9e-13 Score=140.77 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=95.6
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHc------------CCCCCeeeeecc--cc--------Cccee---EeecCcCC
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAG------------LLKPDSVEDSDV--EI--------PEFNV---SYKPQKIS 423 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~G------------l~~p~~G~i~~~--~~--------~~~~i---~y~~q~~~ 423 (605)
|.+..|++++|+|+||+|||||+++|+| .+.|+.|.+... .. +...+ .++.+.+.
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 4556678999999999999999999999 556777765310 00 01111 13333322
Q ss_pred CCCcCcHHH----HHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCC--CEEEEecCCCC
Q 040300 424 PKFQSTVRH----LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPA--DIYLIDEPSAY 497 (605)
Q Consensus 424 ~~~~~tv~~----~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p--~lllLDEPt~~ 497 (605)
.....+..+ .+...++. ++.++..++. .-+..+..+||+. +| +++++|||+++
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~-------~d~il~Vvd~--~~d~~i~~v~~~~------------dP~~di~ildeel~~ 153 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRA-------VDAIYQVVRA--FDDAEIIHVEGDV------------DPIRDLSIIVDELLI 153 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTT-------CSEEEEEEEC--CCTTCSSCCSSSS------------CHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHH-------HHHHHHHHhc--cccceeeeecccc------------CcchhhhhchhhhHH
Confidence 211111111 00000000 0001111111 1245566677763 89 99999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEE-EEeCC
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI-VYEGQ 544 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrvi-v~~g~ 544 (605)
+|+..+...+..++++....|.|++ +|++..+..+||++. +++.+
T Consensus 154 ~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G 199 (392)
T 1ni3_A 154 KDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTET 199 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccC
Confidence 9999999999999887233467753 999999999999998 77644
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.1e-11 Score=126.37 Aligned_cols=139 Identities=21% Similarity=0.160 Sum_probs=92.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCC----CCCeeeeec--cc-------cCcceeEeecCcCCCCCcCcHHHHHHhhhccC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLL----KPDSVEDSD--VE-------IPEFNVSYKPQKISPKFQSTVRHLLHQKIRDS 441 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~----~p~~G~i~~--~~-------~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~ 441 (605)
+.++|+||||+|||||+++|+|.+ .+++|.+.. .. .....|.+++|.... ..++.+.+.......
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l--~~~~~e~L~~~~~~~ 129 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRL--NKAVEELLYSAIEDF 129 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGC--CHHHHHHHHHHHHTS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhc--CHHHHHHHHHHHHhc
Confidence 568999999999999999999998 666665431 11 123458888875432 226666654322111
Q ss_pred C--------CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Q 040300 442 Y--------THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF 513 (605)
Q Consensus 442 ~--------~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 513 (605)
. .....+...+..+++.. ..+.+..||+|++||+.++ .+||+.+..++.++|++.
T Consensus 130 ~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 130 QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp CCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred ccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 0 11122344556666655 6788899999999998655 788888888999999987
Q ss_pred HhcCCcEEEEEecCHHHHHhhcCE
Q 040300 514 ILHAKKTAFVVEHDFIMATYLADR 537 (605)
Q Consensus 514 ~~~~g~tiivvsHD~~~~~~~adr 537 (605)
....+ ++||.+.+..+|++
T Consensus 193 ~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 193 ASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp HHHTT-----CCBCHHHHHHHHHT
T ss_pred HHHcC-----CCcCHHHHHHHHHh
Confidence 65444 47888888887764
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.97 E-value=6.8e-10 Score=114.84 Aligned_cols=92 Identities=21% Similarity=0.263 Sum_probs=65.6
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHH
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVM 452 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l 452 (605)
+|++++|+|+||+||||+++.|++.++++.|++ .++..+. +.....+ ....++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV----------~lv~~D~---~r~~a~e--------------qL~~~~ 155 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV----------VLAAADT---FRAAAIE--------------QLKIWG 155 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE----------EEEEECT---TCHHHHH--------------HHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEE----------EEEcccc---ccHHHHH--------------HHHHHH
Confidence 347899999999999999999999998776554 2332221 1101111 122344
Q ss_pred hhcCCchhhccCcCcCChhHHHHH---HHHHHHccCCCEEEEecCCC
Q 040300 453 KPLLIEQLMDQEVVNLSGGELQRV---ALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 453 ~~l~l~~~~~~~~~~LSGGe~QRv---aiA~aL~~~p~lllLDEPt~ 496 (605)
+.+++.. +..+|||+.|++ +|++++..+|+++|+|||..
T Consensus 156 ~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 156 ERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 4556543 346799999999 99999999999999999985
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.6e-10 Score=115.66 Aligned_cols=130 Identities=17% Similarity=0.154 Sum_probs=81.7
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHH
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVM 452 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l 452 (605)
+|++++|+|+||+||||++..|++.+.+++|. ++.++.++.. ..+..+.+.. +.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~---------~V~lv~~D~~---r~~a~eqL~~--------------~~ 157 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK---------KIAFITTDTY---RIAAVEQLKT--------------YA 157 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC---------CEEEEECCCS---STTHHHHHHH--------------HH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC---------EEEEEecCcc---cchHHHHHHH--------------HH
Confidence 35799999999999999999999999876662 4666766542 2233332211 11
Q ss_pred hhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh--cCCcEEEEE--ecCH
Q 040300 453 KPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL--HAKKTAFVV--EHDF 528 (605)
Q Consensus 453 ~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~g~tiivv--sHD~ 528 (605)
+.+++.... ..+. ...+.+|++ +.+++++|+| |+|+|...+..+..+.+ +.. ....+++++ +|+.
T Consensus 158 ~~~gl~~~~-----~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~-~l~~~~~~~~~lVl~at~~~ 226 (296)
T 2px0_A 158 ELLQAPLEV-----CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKE-TIPFESSIQSFLVLSATAKY 226 (296)
T ss_dssp TTTTCCCCB-----CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHH-HSCCCTTEEEEEEEETTBCH
T ss_pred HhcCCCeEe-----cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHH-HHhhcCCCeEEEEEECCCCH
Confidence 222332111 1122 334566664 4899999999 99999876654444433 322 122345555 9999
Q ss_pred HHHHhhcCEEE
Q 040300 529 IMATYLADRVI 539 (605)
Q Consensus 529 ~~~~~~adrvi 539 (605)
..+..+++++.
T Consensus 227 ~~~~~~~~~~~ 237 (296)
T 2px0_A 227 EDMKHIVKRFS 237 (296)
T ss_dssp HHHHHHTTTTS
T ss_pred HHHHHHHHHHh
Confidence 88888888754
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.96 E-value=9.9e-10 Score=119.82 Aligned_cols=166 Identities=13% Similarity=0.160 Sum_probs=101.7
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCc-eeeCCCChhhhhhhhccchhh--hhHHHHHHHHHHHhhcccccccc
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG-RFNNPPDWQEILTYFRGSELQ--NYFTRILEDNLKAIIKPQYVDHI 176 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G-~i~~~~~~~~~~~~~~g~~l~--~~~~~~~~~~~~~~~~~q~~~~~ 176 (605)
+.+|+++.|.|++|+|||||+..+++...+..| .+. ++ +.+.. ....++.... ..+..+
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl----------~~-s~E~s~~~l~~r~~~~~--~~~~~~----- 261 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVA----------IF-SLEMSAQQLVMRMLCAE--GNINAQ----- 261 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEE----------EE-ESSSCHHHHHHHHHHHH--HTCCHH-----
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEE----------EE-ECCCCHHHHHHHHHHHH--cCCCHH-----
Confidence 469999999999999999999999987765444 221 11 11110 0111110000 000000
Q ss_pred hhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCC------
Q 040300 177 PKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV--QNAEIYMFDEPSSYLD------ 248 (605)
Q Consensus 177 ~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~--~~p~vlllDEPts~LD------ 248 (605)
....+ .+. ..+..++.+.++.++...+.-.....+|.+|.+ +.++.++ .+|+++++|+++...+
T Consensus 262 -~l~~g----~l~-~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~ 333 (454)
T 2r6a_A 262 -NLRTG----KLT-PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKE 333 (454)
T ss_dssp -HHHTS----CCC-HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC---
T ss_pred -HHhcC----CCC-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCC
Confidence 00001 011 122344555566555544444456789999987 4555555 7899999999999884
Q ss_pred --HHHHHHHHHHHHHhhcC-CcEEEEEec---------C--Hh--------HHHhhcCEEEEEeC
Q 040300 249 --VKQRLKAAQVVRSLLRP-NSYVIVVEH---------D--LS--------VLDYLSDFICCLYG 291 (605)
Q Consensus 249 --~~~r~~~~~~i~~l~~~-g~tvivvsH---------d--l~--------~l~~~~D~i~vl~g 291 (605)
......+.+.|+.++++ +.+||+++| | +. .+.+.||.|+.|+.
T Consensus 334 ~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 334 NRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 23445677777877754 899999999 3 22 56778999999974
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-09 Score=111.42 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=67.4
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 180 (605)
.+|++++|+|+||+||||+++.|++.+.+..|++. +.+.+.+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~-----------lv~~D~~r~------------------------- 145 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV-----------LAAADTFRA------------------------- 145 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE-----------EEEECTTCH-------------------------
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE-----------EEccccccH-------------------------
Confidence 57999999999999999999999999988766652 111111100
Q ss_pred hchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHH---HHHHHHccCCCEEEEeCCCC
Q 040300 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRF---AIAVVAVQNAEIYMFDEPSS 245 (605)
Q Consensus 181 ~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRv---aIA~aL~~~p~vlllDEPts 245 (605)
...+.+..+++.+++.. +..+|||+.|++ +|++++..+||++|+|||..
T Consensus 146 -----------~a~eqL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 146 -----------AAIEQLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----------HHHHHHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----------HHHHHHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 00011233445556653 346789999999 99999999999999999985
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.9e-12 Score=124.20 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=43.1
Q ss_pred HHH-HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 478 LCL-CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 478 iA~-aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
.|+ +++.+|.+++|||||+++|.++...+.+.|.++..+ +.+.|. . ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGS--T--TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhc--c--CCceEEEECCC
Confidence 455 678888999999999999999888888888876443 234561 1 46899888763
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.4e-11 Score=123.79 Aligned_cols=122 Identities=13% Similarity=0.124 Sum_probs=69.7
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCC-----Ccee-eCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccc--
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPN-----LGRF-NNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQY-- 172 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-----~G~i-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~-- 172 (605)
.++.++||+|++|||||||++.|++.+.+. .+.+ .. + .+ |+......++.... +..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~----D---~f--------~~~~~~~~~l~~~~-~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASI----D---DF--------YLTHEDQLKLNEQF-KNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEG----G---GG--------BCCHHHHHHHHHHT-TTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecc----c---cc--------cCChHHHHHHhccc-cccch
Confidence 578999999999999999999999998653 1111 10 0 00 11111111111100 000
Q ss_pred cc--cchhhhhchhhhhcCchHHHHHHHHHHhhcCCc--------hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 040300 173 VD--HIPKAVQGNVGQVLDQKDERDMKADLCTDLDLN--------QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDE 242 (605)
Q Consensus 173 ~~--~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~--------~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDE 242 (605)
.. ..|.. .+...+.+.++.+.-. ......-..+||||.||+++|++.+.+|+|+||||
T Consensus 93 ~~~~g~p~a------------~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG 160 (290)
T 1odf_A 93 LQGRGLPGT------------HDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEG 160 (290)
T ss_dssp GSSSCSTTS------------BCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEE
T ss_pred hhhccCcch------------hHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeC
Confidence 00 01111 1122334455554322 11334457899999999999833333999999999
Q ss_pred CCCCCCHH
Q 040300 243 PSSYLDVK 250 (605)
Q Consensus 243 Pts~LD~~ 250 (605)
|+++||+.
T Consensus 161 ~~~~ld~~ 168 (290)
T 1odf_A 161 WFLGFNPI 168 (290)
T ss_dssp SSTTCCCC
T ss_pred ccccCCcc
Confidence 99999975
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-10 Score=121.19 Aligned_cols=148 Identities=11% Similarity=0.023 Sum_probs=93.1
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----------CcceeEeecCcCCC
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----------PEFNVSYKPQKISP 424 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----------~~~~i~y~~q~~~~ 424 (605)
.+++++|++.+| ++++|+||||||||||+++|+|++.|++|++. +... ...+++|++|+...
T Consensus 44 ~l~~i~~~~~~g-----~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 44 LIDAVLPQTGRA-----IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHGGGCCCS-----EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHhCCcccCCC-----eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 356666666665 78999999999999999999999999988764 1111 12347888887543
Q ss_pred CCc---------Cc---HHHHHH-h--------------------hh----------ccC-CCCH-H----HHHHHHhhc
Q 040300 425 KFQ---------ST---VRHLLH-Q--------------------KI----------RDS-YTHP-Q----FVSDVMKPL 455 (605)
Q Consensus 425 ~~~---------~t---v~~~~~-~--------------------~~----------~~~-~~~~-~----~~~~~l~~l 455 (605)
... .+ +.+.+. . .+ ... ..+. + ...++...+
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMI 198 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEE
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEE
Confidence 211 11 111110 0 00 000 0000 0 001111122
Q ss_pred CCchhhcc-CcCcCChhHHHHHHHHHHHcc------CCCEEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 040300 456 LIEQLMDQ-EVVNLSGGELQRVALCLCLGK------PADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515 (605)
Q Consensus 456 ~l~~~~~~-~~~~LSGGe~QRvaiA~aL~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 515 (605)
.+ +..|. ....+|+|++|++..|++++. .|++++ ||++|......+++.|.++..
T Consensus 199 vl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 199 AV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 22 23342 346789999999999999987 688876 999999999999999998754
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.9e-10 Score=118.03 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=84.8
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccc-hhhhhHHHHHHHHHHHhhcccccccchh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGS-ELQNYFTRILEDNLKAIIKPQYVDHIPK 178 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~-~l~~~~~~~~~~~~~~~~~~q~~~~~~~ 178 (605)
+++|++++|+|+||||||||+++|+|+++|+.|.+... |. ++.. +.....+
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie-----------~~~e~~~---------------~~~~~~v-- 223 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE-----------DVPELFL---------------PDHPNHV-- 223 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE-----------SSSCCCC---------------TTCSSEE--
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC-----------CccccCc---------------cccCCEE--
Confidence 47999999999999999999999999999999987521 10 0000 0000000
Q ss_pred hhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 040300 179 AVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV 258 (605)
Q Consensus 179 ~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~ 258 (605)
. ++...+ ....++++..++.+|+.++..+|+.+++|||.. .++.++
T Consensus 224 ------~-~v~~q~--------------------~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~ 269 (361)
T 2gza_A 224 ------H-LFYPSE--------------------AKEEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDF 269 (361)
T ss_dssp ------E-EECC------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHH
T ss_pred ------E-EeecCc--------------------cccccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHH
Confidence 0 000000 000124555789999999999999999999986 235667
Q ss_pred HHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 259 VRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 259 i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
|+.+.....|++.+.|+.+ ....+||+..+.
T Consensus 270 l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~ 300 (361)
T 2gza_A 270 INVAASGHGGSITSCHAGS-CELTFERLALMV 300 (361)
T ss_dssp HHHHHTTCCSCEEEEECSS-HHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEECCCC-HHHHHHHHHHHH
Confidence 7777553457889999966 666789988775
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-12 Score=143.15 Aligned_cols=60 Identities=12% Similarity=-0.058 Sum_probs=46.8
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEE--EecCHhHHHhhcC
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV--VEHDLSVLDYLSD 284 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tviv--vsHdl~~l~~~~D 284 (605)
....+||||+||.++|. + | |++||+..+..+++.|.++...+.|+++ +||+++++...|+
T Consensus 397 ~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 397 QTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 44568999999987751 1 7 9999998776666677777666889885 8999999988774
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.87 E-value=4e-09 Score=104.19 Aligned_cols=59 Identities=15% Similarity=0.003 Sum_probs=43.3
Q ss_pred cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHhh-cCCcEEEEEecCHhH--------HHhhcCEEEEEeC
Q 040300 233 QNAEIYMFDEPSSYL--DVKQRLKAAQVVRSLL-RPNSYVIVVEHDLSV--------LDYLSDFICCLYG 291 (605)
Q Consensus 233 ~~p~vlllDEPts~L--D~~~r~~~~~~i~~l~-~~g~tvivvsHdl~~--------l~~~~D~i~vl~g 291 (605)
.+|+++++|+|++.+ |+..+...+..+.+++ +.|.+||+++|.... +...+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6544444444454444 568999999998775 5677899999963
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.87 E-value=4.2e-11 Score=127.82 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=57.0
Q ss_pred cccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHh-hcCCcEEEEEecCHhHHHhhcCEEE
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSL-LRPNSYVIVVEHDLSVLDYLSDFIC 287 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l-~~~g~tvivvsHdl~~l~~~~D~i~ 287 (605)
++.+..+||+. +| +++++|||++.+|+..+...+..++.+ .+.|.||+ +|++..+..+||++.
T Consensus 128 d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~ 193 (392)
T 1ni3_A 128 DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVY 193 (392)
T ss_dssp TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHH
T ss_pred cceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHH
Confidence 45666677763 99 999999999999999999999999998 66677764 999999999999998
Q ss_pred -EEeCc
Q 040300 288 -CLYGK 292 (605)
Q Consensus 288 -vl~g~ 292 (605)
+|..+
T Consensus 194 ~~L~~G 199 (392)
T 1ni3_A 194 QYLTET 199 (392)
T ss_dssp HHHHTT
T ss_pred HHhccC
Confidence 67543
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.9e-10 Score=104.23 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=49.2
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec--cccCc-ce-eEeecCcCCCCCcCcHHHH
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD--VEIPE-FN-VSYKPQKISPKFQSTVRHL 433 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~--~~~~~-~~-i~y~~q~~~~~~~~tv~~~ 433 (605)
.+++++|++.+| |+++|+||||||||||+|+|+|++ |++|++.. ..+.. .. ..|++|+.... ..|+.++
T Consensus 22 ~l~~vsl~i~~G-----e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 22 AEILLKLHTEKA-----IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp HHHHHHHCCSSC-----EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTH
T ss_pred HHhccccccCCC-----CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc-cCCcHHH
Confidence 456777777777 789999999999999999999999 99998751 11110 00 12677775443 5666554
Q ss_pred H
Q 040300 434 L 434 (605)
Q Consensus 434 ~ 434 (605)
+
T Consensus 95 l 95 (158)
T 1htw_A 95 L 95 (158)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-10 Score=125.84 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=33.6
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~ 135 (605)
+.+|++++|+|+||||||||+++|+|+++|+.|++.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 468999999999999999999999999999999874
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.2e-09 Score=109.37 Aligned_cols=130 Identities=12% Similarity=0.086 Sum_probs=77.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCc-eeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG-RFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G-~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
.+|++++|+|+||+||||+++.|++.+.++.| ++. +.+.+.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~-----------lv~~D~~r~------------------------ 147 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIA-----------FITTDTYRI------------------------ 147 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEE-----------EEECCCSST------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEE-----------EEecCcccc------------------------
Confidence 57999999999999999999999999988777 331 111110000
Q ss_pred hhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 040300 180 VQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259 (605)
Q Consensus 180 ~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i 259 (605)
...+....+.+.+|+.... ..+. ...+.+|++ +.+||++|+| |+++|+..+..+.++.
T Consensus 148 ------------~a~eqL~~~~~~~gl~~~~-----~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~ 205 (296)
T 2px0_A 148 ------------AAVEQLKTYAELLQAPLEV-----CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELK 205 (296)
T ss_dssp ------------THHHHHHHHHTTTTCCCCB-----CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHH
T ss_pred ------------hHHHHHHHHHHhcCCCeEe-----cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHH
Confidence 0000111122223332111 1122 334566664 4999999999 9999987655444443
Q ss_pred HHhhc--CCcEEEEE--ecCHhHHHhhcCEEE
Q 040300 260 RSLLR--PNSYVIVV--EHDLSVLDYLSDFIC 287 (605)
Q Consensus 260 ~~l~~--~g~tvivv--sHdl~~l~~~~D~i~ 287 (605)
+-+.. ...+++++ +|+...+..+++++.
T Consensus 206 ~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~ 237 (296)
T 2px0_A 206 ETIPFESSIQSFLVLSATAKYEDMKHIVKRFS 237 (296)
T ss_dssp HHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS
T ss_pred HHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh
Confidence 33321 22334444 899988888877653
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.4e-12 Score=128.68 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=78.6
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCc-------ceeEeecCcCC-CCCcCc
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPE-------FNVSYKPQKIS-PKFQST 429 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~-------~~i~y~~q~~~-~~~~~t 429 (605)
.+.++++.+..| ++|+||||+|||||+++|+|...+..-.+.+..+.. ..+++++|... .....+
T Consensus 35 ~l~~~~l~~~~G-------vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 35 QFKALGLVTPAG-------VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp HHHHTTCCCCSE-------EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHcCCCCCCe-------EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 356666777666 899999999999999999999877322221111100 12333333210 000011
Q ss_pred HHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC------------C
Q 040300 430 VRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA------------Y 497 (605)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~------------~ 497 (605)
+.+.+... ..... ..+ .-......++.+.+|||||+||+.|++|+..+|++| |||+. .
T Consensus 108 ~~Deid~~----~~~r~-~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~ 177 (274)
T 2x8a_A 108 FFDEVDAL----CPRRS-DRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGL 177 (274)
T ss_dssp EEETCTTT----CC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCS
T ss_pred eeehhhhh----hcccC-CCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCC
Confidence 11111000 00000 000 001234566778899999999999999999999975 99964 3
Q ss_pred CCHHHHHHHHHHH
Q 040300 498 LDSEQRIVAAKVI 510 (605)
Q Consensus 498 LD~~~~~~l~~~l 510 (605)
.|...|..+++.+
T Consensus 178 P~~~~r~~il~~~ 190 (274)
T 2x8a_A 178 PPPADRLAILKTI 190 (274)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 4777777766554
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.3e-11 Score=121.30 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=41.6
Q ss_pred chhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCC------------CCCCHHHHHHHHHHH
Q 040300 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPS------------SYLDVKQRLKAAQVV 259 (605)
Q Consensus 207 ~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPt------------s~LD~~~r~~~~~~i 259 (605)
....++.+.+|||||+||+.|++|+..+|++| |||+ ...|..+|..+++.+
T Consensus 128 ~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 128 VRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp TTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 45667788899999999999999999999975 9986 345788887776654
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=9.4e-11 Score=126.31 Aligned_cols=129 Identities=21% Similarity=0.201 Sum_probs=71.6
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceee---CCCChh--hhhhhhccchhhhhHHHHHHHHHHHhhccccccc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN---NPPDWQ--EILTYFRGSELQNYFTRILEDNLKAIIKPQYVDH 175 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~---~~~~~~--~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~ 175 (605)
.+|++++|+||||||||||+++|+|.++|+.|+|. .+.... .+...-........|... ++.+ ..|..+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~----lr~~-Lrq~pd~ 239 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARG----LRAI-LRQDPDV 239 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHH----HHHH-GGGCCSE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHH----HHHH-hccCCCe
Confidence 68999999999999999999999999999999864 111110 000000000111111111 1111 1121111
Q ss_pred c--h-----hhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 176 I--P-----KAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 176 ~--~-----~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
+ . ..+...+... +...+.. .+.+.+..+++.... .+.+|||||+|| ||++|+.+|++..
T Consensus 240 i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~-~~i~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 240 VMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV-GAVTRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH-HHHHHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred EEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH-HHHHHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 1 0 0010001000 1111112 233356778887653 678999999999 9999999999876
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.79 E-value=9.7e-09 Score=108.15 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=82.2
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.||||+|||||+..++.......+ .+.|+.-+... . ....
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~----------~vlyi~~E~~~--~----~~~a------------- 106 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG----------IAAFIDAEHAL--D----PEYA------------- 106 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC----------CEEEEESSCCC--C----HHHH-------------
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC----------eEEEEECCCCc--C----HHHH-------------
Confidence 56888899999999999999998888765432222 34555543211 1 0111
Q ss_pred HHHHhhcCCc--hhhccCcCcCChhHHHHHHHHHHHcc--CCCEEEEecCCCCC----------CH---HHHHHHHHHHH
Q 040300 449 SDVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCLGK--PADIYLIDEPSAYL----------DS---EQRIVAAKVIK 511 (605)
Q Consensus 449 ~~~l~~l~l~--~~~~~~~~~LSGGe~QRvaiA~aL~~--~p~lllLDEPt~~L----------D~---~~~~~l~~~l~ 511 (605)
+.+++. .+.-. ...+. .|-+.++++++. +|+++++|||++.+ |+ .+.+.+.+.++
T Consensus 107 ----~~lG~~~~~l~i~--~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~ 178 (349)
T 2zr9_A 107 ----KKLGVDTDSLLVS--QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178 (349)
T ss_dssp ----HHTTCCGGGCEEE--CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHH
T ss_pred ----HHcCCCHHHeEEe--cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHH
Confidence 111111 11100 11232 234567777765 49999999999998 33 22234455555
Q ss_pred HH---HhcCCcEEEEEecCHH----------------HHHhhcCEEEEEe
Q 040300 512 RF---ILHAKKTAFVVEHDFI----------------MATYLADRVIVYE 542 (605)
Q Consensus 512 ~l---~~~~g~tiivvsHD~~----------------~~~~~adrviv~~ 542 (605)
++ +++.+.|||+++|-.. .+..+||.++.+.
T Consensus 179 ~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lr 228 (349)
T 2zr9_A 179 KMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVR 228 (349)
T ss_dssp HHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEE
Confidence 54 3566999999999543 2567899888775
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=6e-10 Score=122.47 Aligned_cols=166 Identities=15% Similarity=0.063 Sum_probs=97.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhc--CCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccc---ccc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAG--KLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQY---VDH 175 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G--~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~---~~~ 175 (605)
..+.+++|.|++||||||+++.|.. +..++-|++..- +--+.+.+++.|.. .|.. +-.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~------liDpK~~el~~~~~-----------lPhl~~~Vvt 227 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFI------MIDPKMLELSVYEG-----------IPHLLTEVVT 227 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEE------EECCSSSGGGGGTT-----------CTTBSSSCBC
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEE------EECCchhhhhhhcc-----------CCcccceeec
Confidence 4689999999999999999999875 334443443200 00011222322210 0110 000
Q ss_pred chhhhhchhhhhcC--chHHHHHHHHHHhhcCCchhhcc---cCCCCChHHHHHH----------HHHHHHccCCC-EEE
Q 040300 176 IPKAVQGNVGQVLD--QKDERDMKADLCTDLDLNQVIDR---NVGDLSGGELQRF----------AIAVVAVQNAE-IYM 239 (605)
Q Consensus 176 ~~~~~~~~v~~~l~--~~~~~~~~~~~l~~l~L~~~~dr---~v~~LSGGe~QRv----------aIA~aL~~~p~-vll 239 (605)
.+.. ....+. ...+++| .+++..+|+.++.+. ....+|+||+|+. ++|+++...|. +++
T Consensus 228 d~~~----a~~~L~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 228 DMKD----AANALRWCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp SHHH----HHHHHHHHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred CHHH----HHHHHHHHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 0100 011111 1123334 367888888765432 2346899988752 35667788898 899
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhh---c-CCcEEEEEecCHh-------HHHhhcCEEEEE
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLL---R-PNSYVIVVEHDLS-------VLDYLSDFICCL 289 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~---~-~g~tvivvsHdl~-------~l~~~~D~i~vl 289 (605)
+||+++.++.. ...+.+.|.+++ . .|.++|++||+.. +...+.+||++-
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 99999999843 234455555543 2 3889999999987 567788888665
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-09 Score=113.81 Aligned_cols=47 Identities=9% Similarity=-0.067 Sum_probs=41.0
Q ss_pred CCCCChHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 040300 214 VGDLSGGELQRFAIAVVAVQ------NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~------~p~vlllDEPts~LD~~~r~~~~~~i~~l~~ 264 (605)
...+|+|++|++..|.+++. .|++++ ||++|.....++++.|.++..
T Consensus 208 ~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 208 GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999987 688886 999999999999999988654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-09 Score=112.08 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=59.7
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec-----cccC---c---ceeEeecCcCCCCC----cCcHHHHHHh--
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD-----VEIP---E---FNVSYKPQKISPKF----QSTVRHLLHQ-- 436 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~-----~~~~---~---~~i~y~~q~~~~~~----~~tv~~~~~~-- 436 (605)
|++++|+||||+|||||+++|+|+.+|++|.+.. .... . ..++|++|.+.... ..|+ +++..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f 251 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTF 251 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHH
Confidence 5799999999999999999999999999998741 1111 1 12689999875432 4577 54421
Q ss_pred h-h---------cc--C-CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHH
Q 040300 437 K-I---------RD--S-YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQR 475 (605)
Q Consensus 437 ~-~---------~~--~-~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QR 475 (605)
. . .. . ......+.++++.++|.+...+....|+.|++||
T Consensus 252 ~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 252 PDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 0 1 00 0 0112457889999999876666677777787773
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-10 Score=121.07 Aligned_cols=142 Identities=19% Similarity=0.224 Sum_probs=79.1
Q ss_pred cEEEEECCCCChHHHHHHHHhcCC----CCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKL----KPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l----~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
+.++|+||||+|||||+++|+|.+ .|..|.+.. .+.++...+. ... .....+++++...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~-----------~~~~l~~~~~-----~~~-~~~v~~iDE~~~l 114 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV-----------KQGDMAAILT-----SLE-RGDVLFIDEIHRL 114 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC-----------SHHHHHHHHH-----HCC-TTCEEEEETGGGC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc-----------CHHHHHHHHH-----Hcc-CCCEEEEcchhhc
Confidence 789999999999999999999998 444443321 1111111100 000 0011122322211
Q ss_pred hhchhhhhc----C---------chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 040300 180 VQGNVGQVL----D---------QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246 (605)
Q Consensus 180 ~~~~v~~~l----~---------~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~ 246 (605)
.. ++.+.+ . .......+...+..++|.. ..+.+..||+|++||+.++ .+
T Consensus 115 ~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~----------------~~ 176 (334)
T 1in4_A 115 NK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII----------------LE 176 (334)
T ss_dssp CH-HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE----------------EE
T ss_pred CH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce----------------ee
Confidence 10 111111 0 0011223334455566654 6778899999999999655 67
Q ss_pred CCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCE
Q 040300 247 LDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 247 LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~ 285 (605)
||+....++.++|+++++. + ++|+.+.+..++++
T Consensus 177 Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 177 LDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp CCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 7777778888888887642 3 47999888888764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.71 E-value=5.3e-09 Score=97.73 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=41.5
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeC
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNN 136 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~ 136 (605)
+++++||.. ..++.++ .+.+|++++|+||||||||||+|+|+|.+ |+.|++..
T Consensus 12 ~~~~~~g~~-~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~ 65 (158)
T 1htw_A 12 FSMLRFGKK-FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKS 65 (158)
T ss_dssp HHHHHHHHH-HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCC
T ss_pred HHHHHHHHH-HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEE
Confidence 455667643 2344444 35799999999999999999999999999 99998853
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.8e-09 Score=109.99 Aligned_cols=96 Identities=15% Similarity=0.004 Sum_probs=59.9
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec-----cccC---c----ceeEeecCcCCCC----------------
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD-----VEIP---E----FNVSYKPQKISPK---------------- 425 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~-----~~~~---~----~~i~y~~q~~~~~---------------- 425 (605)
|++++|+||||||||||+++|+|+.+|++|++.. .... . ..++|++|.+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~ 248 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYF 248 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGS
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHH
Confidence 3789999999999999999999999999998742 1111 1 1478999886421
Q ss_pred CcCcHHHHHHhhhcc-CCCCHHHHHHHHhhcCCc-hhhccCcCcCCh
Q 040300 426 FQSTVRHLLHQKIRD-SYTHPQFVSDVMKPLLIE-QLMDQEVVNLSG 470 (605)
Q Consensus 426 ~~~tv~~~~~~~~~~-~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSG 470 (605)
...|+ +++...... .......+.++++.++|. +..++++..||+
T Consensus 249 ~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 249 KEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp TTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred Hhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 11222 222110000 011124578899999995 788999999995
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-09 Score=120.50 Aligned_cols=173 Identities=13% Similarity=0.112 Sum_probs=98.1
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHc--CCCCCeeeee--ccccCcceeE-e--ecCcCCCCCcCcHHHH
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAG--LLKPDSVEDS--DVEIPEFNVS-Y--KPQKISPKFQSTVRHL 433 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~G--l~~p~~G~i~--~~~~~~~~i~-y--~~q~~~~~~~~tv~~~ 433 (605)
.+.+++..+ ..+.|.|++||||||+++.|.. +.+++.+++. ..+......+ | +|.-..... ....+.
T Consensus 159 pv~ldL~~~-----pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vv-td~~~a 232 (512)
T 2ius_A 159 PVVADLAKM-----PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVV-TDMKDA 232 (512)
T ss_dssp EEEEEGGGS-----CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCB-CSHHHH
T ss_pred EEEEEcccC-----ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceee-cCHHHH
Confidence 356666655 5799999999999999999876 4444433332 1111111111 0 111000011 112111
Q ss_pred HHhhhccCCCCHHHHHHHHhhcCCchhhc---cCcCcCChhHHHHH----------HHHHHHccCCC-EEEEecCCCCCC
Q 040300 434 LHQKIRDSYTHPQFVSDVMKPLLIEQLMD---QEVVNLSGGELQRV----------ALCLCLGKPAD-IYLIDEPSAYLD 499 (605)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~---~~~~~LSGGe~QRv----------aiA~aL~~~p~-lllLDEPt~~LD 499 (605)
.. .+...........++++..|+.++.+ +....+||||+|+. .+|+++...|. ++++||+++.+|
T Consensus 233 ~~-~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~ 311 (512)
T 2ius_A 233 AN-ALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMM 311 (512)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHh
Confidence 10 00000001122236777777765433 23357899998763 35666778887 899999999998
Q ss_pred HHHHHHHHHHHHHHH---hcCCcEEEEEecCHH-------HHHhhcCEEEEE
Q 040300 500 SEQRIVAAKVIKRFI---LHAKKTAFVVEHDFI-------MATYLADRVIVY 541 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~---~~~g~tiivvsHD~~-------~~~~~adrviv~ 541 (605)
.. ...+.+.|.+++ +..|.++|++||+.. ...++.+||.+-
T Consensus 312 ~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 312 TV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp HH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred hh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 43 334555555543 445889999999976 566778888763
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.7e-09 Score=109.13 Aligned_cols=125 Identities=11% Similarity=0.084 Sum_probs=67.2
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeC---CC-Ch---hhhhhh-hccchhhhh-HHHHHHHHHHHhhccc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNN---PP-DW---QEILTY-FRGSELQNY-FTRILEDNLKAIIKPQ 171 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~---~~-~~---~~~~~~-~~g~~l~~~-~~~~~~~~~~~~~~~q 171 (605)
..|++++|+|+||+|||||+|+|+ .+.|..|++.. .. .. ...... ..|..+|+. +... .+-..+..+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~---~l~~~lt~e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKV---EATMFVKPR 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSC---CGGGTSCGG
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcC---cccccCCHH
Confidence 479999999999999999999999 99999998853 10 00 000000 001111110 0000 000000000
Q ss_pred cc-ccchhh--hhchhhhhcCchHHHHHHHHHHhhcCCch-hhcccCCCCChHHHHHHHHHH
Q 040300 172 YV-DHIPKA--VQGNVGQVLDQKDERDMKADLCTDLDLNQ-VIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 172 ~~-~~~~~~--~~~~v~~~l~~~~~~~~~~~~l~~l~L~~-~~dr~v~~LSGGe~QRvaIA~ 229 (605)
.+ ...+.. ............+...++.++++.++|.+ ..++++..|||.++++++|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 000000 00000000111222456889999999986 889999999999999999886
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=7.2e-09 Score=107.19 Aligned_cols=111 Identities=16% Similarity=0.039 Sum_probs=62.7
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCC--CCeeeeec-----cccC---cceeEeecCcCCCCCcCcHHHHHHhhhccC
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLK--PDSVEDSD-----VEIP---EFNVSYKPQKISPKFQSTVRHLLHQKIRDS 441 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~--p~~G~i~~-----~~~~---~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~ 441 (605)
.+|+++||+||||||||||+++|+|++. |++|.+.. ...+ ...++++ |........++.+++....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~--- 153 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVS--- 153 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHH---
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHH---
Confidence 3458999999999999999999999988 99987641 1110 0124455 4433323345555432110
Q ss_pred CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 442 YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
.+. .-......+..+.+.+ +|+..+.+...+++++|+|.|....+
T Consensus 154 --------~l~---~~~~~i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 154 --------DLK---SGVPNVTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp --------HHT---TTCSCEEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred --------HHh---CCCCceeccccccccc--CcccccceecCCCCEEEECchhhCCC
Confidence 000 0000012223333333 33333334456789999999999887
|
| >7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ... | Back alignment and structure |
|---|
Probab=98.60 E-value=2.4e-08 Score=86.59 Aligned_cols=58 Identities=36% Similarity=0.838 Sum_probs=48.6
Q ss_pred EEEeCCCCCcccccc-hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecC
Q 040300 9 AIVSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINL 75 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl 75 (605)
|++|.++|. .|+. .|.+.||.. +|.+++ +...|+.+.|+|||.|+..||++||++.+-
T Consensus 1 ~~~~~~~C~--~C~~~~C~~~CP~~-----ai~~~~--~~~~i~~~~C~~Cg~C~~~CP~~ai~~~~~ 59 (106)
T 7fd1_A 1 AFVVTDNCI--KCKYTDCVEVCPVD-----CFYEGP--NFLVIHPDECIDCALCEPECPAQAIFSEDE 59 (106)
T ss_dssp CEEECGGGT--TTCCCHHHHHCTTC-----CEEECS--SCEEECTTTCCCCCTTGGGCTTCCEEEGGG
T ss_pred CeECccccC--CccCcHHHHHcCcc-----ceEcCC--CcEEECcccCCChhhhHHhCCChhhhcccc
Confidence 578999996 5975 899999974 565543 568899999999999999999999998763
|
| >1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-08 Score=81.55 Aligned_cols=59 Identities=34% Similarity=0.736 Sum_probs=47.9
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecC
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINL 75 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl 75 (605)
|+||.++|.--+| ..|.+.||.+ +|.+++ +...|+.+.|+|||.|+..||++||++...
T Consensus 1 a~i~~~~C~~c~C-~~C~~~Cp~~-----ai~~~~--~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 59 (77)
T 1bc6_A 1 AYVITEPCIGTKD-ASCVEVCPVD-----CIHEGE--DQYYIDPDVCIDCGACEAVCPVSAIYHEDF 59 (77)
T ss_dssp CEECCSTTTTCCC-CSSTTTCTTC-----CEEECS--SSEEECTTTCCSCCSHHHHSGGGSSEETTT
T ss_pred CEEeCccCCCCCc-chhHHhcccc-----cEEeCC--CcEEECcccCcCccCCHhhcCccceEecCC
Confidence 6899999964335 6899999973 555543 567899999999999999999999997654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.52 E-value=2.4e-07 Score=97.48 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=36.9
Q ss_pred HHHHHHHHccC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHh----hcCCcEEEEEecCHh
Q 040300 224 RFAIAVVAVQN--AEIYMFDEPSSYL----------DV---KQRLKAAQVVRSL----LRPNSYVIVVEHDLS 277 (605)
Q Consensus 224 RvaIA~aL~~~--p~vlllDEPts~L----------D~---~~r~~~~~~i~~l----~~~g~tvivvsHdl~ 277 (605)
-+.++++++.+ |+++++|||++.+ |+ .+...+.+.+++| .+.+.+||+++|-..
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 45577777654 9999999999998 33 2222445555555 345999999999654
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.4e-08 Score=93.47 Aligned_cols=28 Identities=25% Similarity=0.554 Sum_probs=25.3
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.+|++++|+||||||||||+++|+|+++
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3568999999999999999999999974
|
| >1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=5.5e-08 Score=79.36 Aligned_cols=59 Identities=37% Similarity=0.662 Sum_probs=47.5
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecC
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINL 75 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl 75 (605)
++||.++|.--+| ..|.+.||.. +|.+++ +...|+.+.|++||.|++.||++||++...
T Consensus 1 p~i~~~~C~~c~C-~~C~~~CP~~-----ai~~~~--~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~ 59 (78)
T 1h98_A 1 PHVICEPCIGVKD-QSCVEVCPVE-----CIYDGG--DQFYIHPEECIDCGACVPACPVNAIYPEED 59 (78)
T ss_dssp CEEECGGGTTTCC-CHHHHHCTTC-----CEEECS--SSEEECTTTCCCCCTHHHHCTTCCEEEGGG
T ss_pred CEEEchhCCCCCc-ChhhhhcCcc-----ceEcCC--CEEEECcccCCcHhHHHHhCCccceEeccc
Confidence 4789999964336 6899999963 566643 567899999999999999999999997654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-07 Score=98.46 Aligned_cols=122 Identities=19% Similarity=0.176 Sum_probs=78.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhc
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPL 455 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l 455 (605)
.++|+|+||+|||||++.|+|.. +..+.... ......++++++.. . .+..+
T Consensus 169 ~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~-~t~~~~~~~~~~~~---~------------------------~~~l~ 219 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALTTAK-PEIASYPF-TTRGINVGQFEDGY---F------------------------RYQII 219 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHCSSC-CEEECCTT-CSSCEEEEEEEETT---E------------------------EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CccCCCCC-eeeceeEEEEEecC---c------------------------eEEEE
Confidence 68999999999999999999875 32221100 00111222222110 0 00111
Q ss_pred CCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe-cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe--cCHH
Q 040300 456 LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID-EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE--HDFI 529 (605)
Q Consensus 456 ~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD-EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvs--HD~~ 529 (605)
+.....+.++..+|+||+|++. +.+...++-++++| +|++++|......+...+.+... +..+|+|. ||+.
T Consensus 220 Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 220 DTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp ECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred eCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 1122334567789999998876 55555677789999 99999999988887777776532 77888888 8874
|
| >3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A | Back alignment and structure |
|---|
Probab=98.49 E-value=8.1e-08 Score=79.20 Aligned_cols=57 Identities=32% Similarity=0.669 Sum_probs=47.9
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc------cccccCCcceEEEecC
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG------ICVKKCPFEAIQIINL 75 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g------~~~~~cp~~ai~i~nl 75 (605)
|++|.++|. .| ..|.+.||.+ +|.+++ +...|+.+.|++|| .|+..||++||++..-
T Consensus 1 ~~~~~~~C~--~C-~~C~~~CP~~-----ai~~~~--~~~~i~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (82)
T 3eun_A 1 ALMITDECI--NC-DVCEPECPNG-----AISQGD--ETYVIEPSLCTECVGHYETSQCVEVCPVDAIIKDPS 63 (82)
T ss_dssp CEEECTTCC--CC-CTTGGGCTTC-----CEEECS--SSEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECGG
T ss_pred CeEeCCCCc--Cc-cchHHHCChh-----heEcCC--CceEEchhhcCCCCCCCCccHHHHhCCccceEEcCC
Confidence 689999996 68 4999999964 565643 56789999999999 9999999999998764
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.8e-07 Score=96.35 Aligned_cols=123 Identities=9% Similarity=0.169 Sum_probs=84.0
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.|++|+|||||+.-++..... ....+.|+.- .++..++.....
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g~~Vl~fSl------Ems~~ql~~Rll---------- 94 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DDRGVAVFSL------EMSAEQLALRAL---------- 94 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TTCEEEEEES------SSCHHHHHHHHH----------
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cCCeEEEEeC------CCCHHHHHHHHH----------
Confidence 34778899999999999999999888754321 1234566542 345555432110
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEec
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA-KKTAFVVEH 526 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tiivvsH 526 (605)
.....+.+..+.+ +.||+++.+|++.|...+.++++++.|+|+..+| .+...++++.++. +..+|||.|
T Consensus 95 -s~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 95 -SDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHHHHHHHhcCCCCEEEEec
Confidence 1111222233332 4799999999999999999999999999975533 5666777776666 789999975
|
| >2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.8e-08 Score=82.46 Aligned_cols=59 Identities=32% Similarity=0.721 Sum_probs=48.1
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecC
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINL 75 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl 75 (605)
|+||.++|.--+| ..|.+.||.+ +|.++. +.+.|+.+.|++||.|+..||++||++.+.
T Consensus 1 ~~i~~~~C~~C~c-~~C~~~CP~~-----ai~~~~--~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~ 59 (105)
T 2v2k_A 1 TYVIAEPCVDVKD-KACIEECPVD-----CIYEGA--RMLYIHPDECVDCGACEPVCPVEAIYYEDD 59 (105)
T ss_dssp CEEECGGGTTTCC-CHHHHHCTTC-----CEEECS--SCEEECTTTCCCCCCSGGGCTTCCEEEGGG
T ss_pred CEEecccCCCCCc-ChhhhhcCcc-----ccCcCC--CcEEEeCCcCcchhhHHHhCCccCEEecCC
Confidence 5789999974345 6899999973 566543 457899999999999999999999998754
|
| >1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=9.2e-08 Score=88.49 Aligned_cols=61 Identities=25% Similarity=0.591 Sum_probs=50.0
Q ss_pred EEEeCCCCCcccccc----hhhcccCccccCceEEEEcCCCCc-eeeccccccccccccccCCcceEEEecCC
Q 040300 9 AIVSSDRCKPKKCRQ----ECKKSCPVVKTGKLCIEVTPAAKI-AFISEELCIGCGICVKKCPFEAIQIINLP 76 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~-~~i~~~~c~~~g~~~~~cp~~ai~i~nl~ 76 (605)
.+||.++|. .|+. .|.+.||. .+|.+++...+ ..|+.+.|++||.|++.||++||++.+..
T Consensus 3 ~~vd~~~C~--~C~~~~~~~C~~~CP~-----~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~~ 68 (150)
T 1jnr_B 3 SFVNPEKCD--GCKALERTACEYICPN-----DLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAIDVRGYV 68 (150)
T ss_dssp EEECTTTCC--SCCSSSSCHHHHHCTT-----SCEEEETTTTEEEESCGGGCCCCCHHHHHCTTCCEEECCCT
T ss_pred eEECcccCC--CCCCcccccchhhcCc-----cCeEEecCCceeeeeCcccCcCHhHHHHhCCccceEecCcc
Confidence 468999996 6863 89999997 36777665444 46899999999999999999999998765
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.8e-07 Score=98.51 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=81.0
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.||||+|||||+..+++...+..|. +.|+.-..... .. ..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~----------VlyId~E~s~~---~~---ra------------- 106 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGV----------AAFIDAEHALD---PV---YA------------- 106 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCC----------EEEEESSCCCC---HH---HH-------------
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCe----------EEEEecccccc---hH---HH-------------
Confidence 567888999999999999999999999876654443 34543321111 00 00
Q ss_pred HHHHhhcCCc--hhhccCcCcCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCCH----------------HHHHHHHH
Q 040300 449 SDVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCLG--KPADIYLIDEPSAYLDS----------------EQRIVAAK 508 (605)
Q Consensus 449 ~~~l~~l~l~--~~~~~~~~~LSGGe~QRvaiA~aL~--~~p~lllLDEPt~~LD~----------------~~~~~l~~ 508 (605)
+++++. .+.- ....+. + +-+.+++.++ ..|+++++|+-++-... .....+++
T Consensus 107 ----~rlgv~~~~l~i--~~~~~~-e-~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~ 178 (356)
T 3hr8_A 107 ----KNLGVDLKSLLI--SQPDHG-E-QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALR 178 (356)
T ss_dssp ----HHHTCCGGGCEE--ECCSSH-H-HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHH
T ss_pred ----HHcCCchhhhhh--hhccCH-H-HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHH
Confidence 011111 1100 011122 1 3344455443 46788888876655531 11123455
Q ss_pred HHHHHHhcCCcEEEEEecCH----------------HHHHhhcCEEEEEeC
Q 040300 509 VIKRFILHAKKTAFVVEHDF----------------IMATYLADRVIVYEG 543 (605)
Q Consensus 509 ~l~~l~~~~g~tiivvsHD~----------------~~~~~~adrviv~~g 543 (605)
.|.+++++.+.|||+|.|-. ..+..++|-++.|+.
T Consensus 179 ~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 179 KIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp HHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEe
Confidence 56677777899999998861 235678898888873
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-07 Score=90.16 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=33.1
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Q 040300 475 RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF 513 (605)
Q Consensus 475 RvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 513 (605)
.+.+|++|+.+|+++++| ||++|..+..++++.|.+.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 467899999999999999 9999999999998888764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.2e-09 Score=100.00 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=32.9
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL 262 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l 262 (605)
.+.+|++++.+|+++++| ||+||...+.++++.|.+.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 467899999999999999 9999999999998888653
|
| >3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-07 Score=88.26 Aligned_cols=62 Identities=27% Similarity=0.562 Sum_probs=50.3
Q ss_pred EEEeCCCCCcccccc----hhhcccCccccCceEEEEcCCCCce-eeccccccccccccccCCcceEEEecCCc
Q 040300 9 AIVSSDRCKPKKCRQ----ECKKSCPVVKTGKLCIEVTPAAKIA-FISEELCIGCGICVKKCPFEAIQIINLPK 77 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~-~i~~~~c~~~g~~~~~cp~~ai~i~nl~~ 77 (605)
.+||.++|. .|+. .|.+.||.+ +|.++++..+. .|+.+.|++||.|++.||++||++.....
T Consensus 2 v~id~~~C~--gC~~c~~~~C~~~CP~~-----ai~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~ 68 (166)
T 3gyx_B 2 TYVDPSKCD--GCKGGEKTACMYICPND-----LMILDPEEMKAFNQEPEACWECYSCIKICPQGAITARPYAD 68 (166)
T ss_dssp EEECTTTCC--CCCSSSCCHHHHHCTTS-----CEEEETTTTEEEESCGGGCCCCCHHHHHCSSCCEEECCCTT
T ss_pred CEEcchhcC--CCCCCCcchhHHhCCcc-----ccEEecCCceeEecCcccCcccChHhHhCCccceEEecccc
Confidence 368999995 6864 899999963 67777654434 48889999999999999999999987643
|
| >1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.7e-07 Score=70.32 Aligned_cols=54 Identities=20% Similarity=0.524 Sum_probs=41.8
Q ss_pred EEeCCCCCcccccchhhcccCccccCceEEEEcCCCCcee--eccccccccccccccCCcceEEE
Q 040300 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAF--ISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
.+|.++|. .|+ .|.+.||. .|.+..+++++. ++++.|++||.|++.||.+||++
T Consensus 3 ~i~~~~C~--~C~-~C~~~Cp~------~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~ 58 (59)
T 1dwl_A 3 VIDHEECI--GCE-SCVELCPE------VFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAISK 58 (59)
T ss_dssp EESSCCCS--SCC-GGGGTSTT------TEEEEECSSCEEESCTTCCCGGGGTGGGGSTTCCEEE
T ss_pred EEChhhCc--Chh-HHHHHCCH------HheecCCCCcEEEecChhhhhHHHHHHHhCCHhhEEc
Confidence 57899994 784 69999993 245522234555 48999999999999999999986
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-07 Score=103.97 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=54.0
Q ss_pred CcCcCChhHHHHH--HHHHHHcc---------------CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 040300 464 EVVNLSGGELQRV--ALCLCLGK---------------PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 464 ~~~~LSGGe~QRv--aiA~aL~~---------------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsH 526 (605)
..+.+||||+|-. +|+.++++ .-.+++|||. +-+|.+.....+++++++ |.=+|+++-
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP 450 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAP 450 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEES
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECc
Confidence 4678999999963 44444433 1248999999 999999999999999886 778899998
Q ss_pred CHHHHHhhcCEEEEE
Q 040300 527 DFIMATYLADRVIVY 541 (605)
Q Consensus 527 D~~~~~~~adrviv~ 541 (605)
+ .+..+.|.++.+
T Consensus 451 ~--~i~p~v~~~~~~ 463 (483)
T 3euj_A 451 E--NISPERGTTYKL 463 (483)
T ss_dssp S--SCCCSSSEEEEC
T ss_pred c--hhhhccCceEEE
Confidence 8 444557777764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.5e-07 Score=95.58 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=52.2
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEe--cCHhH
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFD-EPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE--HDLSV 278 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllD-EPts~LD~~~r~~~~~~i~~l~~~g~tvivvs--Hdl~~ 278 (605)
..+.++..+|+||+|++. +.+...++-++++| +|++++|......++..+..+.. ++.+|+|. ||+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 224 LLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVAD 294 (357)
T ss_dssp TSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCC
T ss_pred ccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCC
Confidence 344677889999998876 55555677789999 99999999887777777766544 77888888 88753
|
| >2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.7e-07 Score=69.77 Aligned_cols=51 Identities=31% Similarity=0.769 Sum_probs=41.2
Q ss_pred eCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEE
Q 040300 12 SSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
..++|. .|+ .|.+.||.+ .|.+++ ++..|+.+.|++||.|++.||++||++
T Consensus 4 i~~~C~--~C~-~C~~~CP~~-----ai~~~~--~~~~~~~~~C~~C~~C~~~CP~~ai~~ 54 (55)
T 2fdn_A 4 INEACI--SCG-ACEPECPVN-----AISSGD--DRYVIDADTCIDCGACAGVCPVDAPVQ 54 (55)
T ss_dssp ECTTCC--CCC-TTGGGCTTC-----CEECCS--SSCEECTTTCCCCCHHHHTCTTCCEEE
T ss_pred ecccCc--Chh-hHHHHCCcc-----ccCcCC--CEEEeccccCcChhChHHHccccceec
Confidence 388994 785 799999974 444433 457889999999999999999999986
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-07 Score=107.06 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=84.3
Q ss_pred eeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCe-eeee--ccc--cCcceeEeecCcCCCCCcCcHHHH
Q 040300 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS-VEDS--DVE--IPEFNVSYKPQKISPKFQSTVRHL 433 (605)
Q Consensus 359 l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~-G~i~--~~~--~~~~~i~y~~q~~~~~~~~tv~~~ 433 (605)
++.+++.+..| +.+.|+||||+|||||+++|++++.+.. |.+. ... .....++|+|+.....+.......
T Consensus 50 l~~l~~~i~~g-----~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~ 124 (604)
T 3k1j_A 50 VEVIKTAANQK-----RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREK 124 (604)
T ss_dssp HHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHH
T ss_pred HhhccccccCC-----CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHh
Confidence 44555555555 6899999999999999999999999887 4332 111 112346777654211000000000
Q ss_pred HHhhh--c-----------------cCC---------CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 434 LHQKI--R-----------------DSY---------THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 434 ~~~~~--~-----------------~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..... + ... .......++ +|-..........+|+|++|++..++....+
T Consensus 125 ~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L---~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~ 201 (604)
T 3k1j_A 125 AKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGAL---LGDVRHDPFQSGGLGTPAHERVEPGMIHRAH 201 (604)
T ss_dssp HHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHH---HCEECCCCC----CCCCGGGGEECCHHHHTT
T ss_pred hccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhc---CceEEechhhcCCccccccccccCceeeecC
Confidence 00000 0 000 000001111 1211111122367999999999998888889
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHH
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKR 512 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~ 512 (605)
+.+|+|||... |++..+..++++|++
T Consensus 202 ~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 202 KGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp TSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999988 899988888888875
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-07 Score=90.89 Aligned_cols=71 Identities=21% Similarity=0.145 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH--HhhcCEEEEEeC
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL--DYLSDFICCLYG 291 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l--~~~~D~i~vl~g 291 (605)
.|.|+.+|..++..+..+|+.+..+ ++.++|..+..+.+.+... .+.+||+.+|.+.+. ...+|.+++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678899999998888877644333 3455666666665555443 256788888988765 668999999964
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-07 Score=92.94 Aligned_cols=37 Identities=30% Similarity=0.301 Sum_probs=21.9
Q ss_pred eeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH-cCCCC
Q 040300 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA-GLLKP 400 (605)
Q Consensus 359 l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~-Gl~~p 400 (605)
.++++|++.+| ++++|+||||||||||+++|+ |++++
T Consensus 17 ~~~~sl~v~~G-----~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 17 QGPGSMLKSVG-----VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -----CCEECC-----CEEEEECSCC----CHHHHHHC----C
T ss_pred cCCCCcccCCC-----CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 46788888877 689999999999999999999 99854
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=7.9e-06 Score=100.64 Aligned_cols=137 Identities=13% Similarity=0.245 Sum_probs=79.9
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.||+|+|||||+..++....... .++.|+.-+.. ..++...
T Consensus 727 GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g----------~~VlyiS~Ees------~~ql~A~------------ 778 (1706)
T 3cmw_A 727 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG----------KTCAFIDAEHA------LDPIYAR------------ 778 (1706)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT----------CCEEEECTTSC------CCHHHHH------------
T ss_pred CCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcC----------CCeEEEeccch------HHHHHHH------------
Confidence 3588999999999999999999999987543221 13555543221 1111111
Q ss_pred HHHHhhcCC--chhhccCcCcCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCC-H------------HHHHHHHHHHH
Q 040300 449 SDVMKPLLI--EQLMDQEVVNLSGGELQRVALCLCLG--KPADIYLIDEPSAYLD-S------------EQRIVAAKVIK 511 (605)
Q Consensus 449 ~~~l~~l~l--~~~~~~~~~~LSGGe~QRvaiA~aL~--~~p~lllLDEPt~~LD-~------------~~~~~l~~~l~ 511 (605)
.+++ +++.-.... +. + +-...++.+. .+|+++++|+-++-.. . .+.+++...++
T Consensus 779 -----~lGvd~~~L~i~~~~--~l-e-ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr 849 (1706)
T 3cmw_A 779 -----KLGVDIDNLLCSQPD--TG-E-QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 849 (1706)
T ss_dssp -----HTTCCGGGCEEECCS--SH-H-HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHH
T ss_pred -----HcCCChhheEEecCC--cH-H-HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHH
Confidence 1111 111101111 22 2 3344454443 5799999999998763 1 12234555555
Q ss_pred H---HHhcCCcEEEEEecCH----------------HHHHhhcCEEEEEe
Q 040300 512 R---FILHAKKTAFVVEHDF----------------IMATYLADRVIVYE 542 (605)
Q Consensus 512 ~---l~~~~g~tiivvsHD~----------------~~~~~~adrviv~~ 542 (605)
+ ++++.+.+||+++|-. ..+...||-++.+.
T Consensus 850 ~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~ 899 (1706)
T 3cmw_A 850 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 899 (1706)
T ss_dssp HHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEE
T ss_pred HHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEE
Confidence 5 4567799999999821 24566788887774
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.4e-07 Score=105.15 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=59.9
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhcCCcEEEE-EecCHhHHHhhcCE
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSS-YLDVKQRLKAAQVVRSLLRPNSYVIV-VEHDLSVLDYLSDF 285 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts-~LD~~~r~~~~~~i~~l~~~g~tviv-vsHdl~~l~~~~D~ 285 (605)
+..+.-+|+|+++|..++.+++.+++++|+|||.. +||......+++.+........+|++ .||+.+.+..+.+.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 45677899999999999999999999999999997 89987766666666555444567777 49998877766553
|
| >1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3.2e-07 Score=78.74 Aligned_cols=57 Identities=30% Similarity=0.558 Sum_probs=43.7
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCC-------ceeeccccccccccccccCCcceEEEe
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAK-------IAFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-------~~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
..||.++|. .| ..|.+.||.. +|.+.+..+ ...++.+.|++||.|++.||++||++.
T Consensus 38 ~~id~~~C~--~C-g~C~~~CP~~-----ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 101 (103)
T 1xer_A 38 VGVDFDLCI--AD-GSCINACPVN-----VFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAIDVK 101 (103)
T ss_dssp EEEETTTCC--CC-CHHHHHCTTC-----CCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTTCCEEEC
T ss_pred EEEehhhCC--Ch-hhHHHHcCcc-----CeecccccCccccccceeecCcccccChhhHHHhccccceEec
Confidence 468999995 68 5799999963 344433211 246788999999999999999999875
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.3e-07 Score=98.52 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCC----------CCCCHHHHHHHHHHHHHHH---hcCCcEEEEEecCHHHH
Q 040300 470 GGELQRVALCLCLGKPADIYLIDEPS----------AYLDSEQRIVAAKVIKRFI---LHAKKTAFVVEHDFIMA 531 (605)
Q Consensus 470 GGe~QRvaiA~aL~~~p~lllLDEPt----------~~LD~~~~~~l~~~l~~l~---~~~g~tiivvsHD~~~~ 531 (605)
|++++|..+++|....|.+|+|||+. ++.|.+....+..++..+- ...+..||.+||..+.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 67888999999999999999999993 4677776666777776652 23467888999987654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.5e-07 Score=91.14 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=19.8
Q ss_pred CCCcEEEEECCCCChHHHHHHHHh-cCCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILA-GKLKP 129 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~-G~l~p 129 (605)
.+|+++||+||||||||||+++|+ |+++|
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 689999999999999999999999 99843
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.27 E-value=8.6e-07 Score=92.65 Aligned_cols=120 Identities=9% Similarity=0.131 Sum_probs=77.0
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
+.+|+++.|.|++|+|||||+.-++.......+.+. +|....
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl----------~fSlEm---------------------------- 84 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA----------VFSLEM---------------------------- 84 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE----------EEESSS----------------------------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE----------EEeCCC----------------------------
Confidence 479999999999999999999888754321111110 111000
Q ss_pred hhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 040300 180 VQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259 (605)
Q Consensus 180 ~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i 259 (605)
.......++......+++..+.+ ..||.++.+|++.|...+.+++++|.|+|+..++ ++...+
T Consensus 85 ---------s~~ql~~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~i 147 (338)
T 4a1f_A 85 ---------SAEQLALRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQL 147 (338)
T ss_dssp ---------CHHHHHHHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHH
T ss_pred ---------CHHHHHHHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHH
Confidence 00011122222223334444443 4799999999999999999999999999875433 455667
Q ss_pred HHhhc-C-CcEEEEEec
Q 040300 260 RSLLR-P-NSYVIVVEH 274 (605)
Q Consensus 260 ~~l~~-~-g~tvivvsH 274 (605)
+++.+ . +..+|||.|
T Consensus 148 r~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 148 RKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHCTTEEEEEEEE
T ss_pred HHHHHhcCCCCEEEEec
Confidence 77664 3 678888876
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.9e-07 Score=88.72 Aligned_cols=128 Identities=20% Similarity=0.209 Sum_probs=73.4
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhc
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPL 455 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l 455 (605)
+++|+|+|||||||+.++|+++ |.. ++.. .++..... . .......++.+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~-----------~id~----------d~~~~~~~-~--~~~~~~~~i~~~~ 54 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVP-----------LVDA----------DVVAREVV-A--KDSPLLSKIVEHF 54 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCC-----------EEEH----------HHHHHHTT-C--SSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCc-----------ccch----------HHHHHHHc-c--CChHHHHHHHHHh
Confidence 6899999999999999999983 210 0000 00000000 0 0011233444444
Q ss_pred CCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH--Hh
Q 040300 456 LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA--TY 533 (605)
Q Consensus 456 ~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~--~~ 533 (605)
|...+ .|.|+.+|..++..+..+|+.+..+ ++.+++..+..+.+.+... .+.++|+.+|.+.+. ..
T Consensus 55 g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~e~~~~~ 122 (206)
T 1jjv_A 55 GAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLIENKLTA 122 (206)
T ss_dssp CTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTTTTTCGG
T ss_pred CHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhhhcCcHh
Confidence 43321 3788999999999888887644332 3456676666655555432 356888889987665 56
Q ss_pred hcCEEEEEeCC
Q 040300 534 LADRVIVYEGQ 544 (605)
Q Consensus 534 ~adrviv~~g~ 544 (605)
.||++++++..
T Consensus 123 ~~d~vi~l~~~ 133 (206)
T 1jjv_A 123 LCDRILVVDVS 133 (206)
T ss_dssp GCSEEEEEECC
T ss_pred hCCEEEEEECC
Confidence 79999998743
|
| >1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-07 Score=72.71 Aligned_cols=56 Identities=20% Similarity=0.412 Sum_probs=43.2
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCcee-ec--cccccccccccccCCcceEEEe
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAF-IS--EELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-i~--~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
.+||.++|. .| ..|.+.|| .- |.++++.+++. ++ ++.|++||.|++.||++||++.
T Consensus 4 ~~id~~~C~--~C-g~C~~~CP-~~-----~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~ 62 (64)
T 1dax_A 4 FYVDQDECI--AC-ESCVEIAP-GA-----FAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWE 62 (64)
T ss_dssp CEECSTTCC--SC-CHHHHHCT-TT-----EEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECC
T ss_pred EEEccccCC--Cc-hHHHHhCC-cc-----EeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeee
Confidence 378999995 68 57999999 32 56655424443 44 7899999999999999999865
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.1e-07 Score=101.65 Aligned_cols=34 Identities=38% Similarity=0.476 Sum_probs=32.2
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~ 135 (605)
.+ +++||+||||||||||+++|+|+++|+.|++.
T Consensus 28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~ 61 (483)
T 3euj_A 28 DE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLN 61 (483)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCC
T ss_pred cc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence 57 99999999999999999999999999999874
|
| >1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-07 Score=76.59 Aligned_cols=56 Identities=29% Similarity=0.580 Sum_probs=45.8
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc------cccccCCcceEEEec
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG------ICVKKCPFEAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g------~~~~~cp~~ai~i~n 74 (605)
|++|.++|. .|+ .|.+.||.. .|.+++ +...|+.+.|++|| .|++.||++||++..
T Consensus 1 ~~~~~~~C~--~C~-~C~~~CP~~-----ai~~~~--~~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (80)
T 1rgv_A 1 ALYINDDCT--ACD-ACVEECPNE-----AITPGD--PIYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNP 62 (80)
T ss_dssp CBCCCSCCC--CCC-TTTTTCTTC-----CEECCS--SSCEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCG
T ss_pred CeEeCCCCc--Chh-hHHHHcChh-----ccCcCC--CeeEEcchhCcCCCCcCCccHHHHhcCcccEEecC
Confidence 468899995 685 799999973 455543 45788999999999 999999999998764
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=6.7e-07 Score=103.63 Aligned_cols=76 Identities=13% Similarity=0.006 Sum_probs=59.5
Q ss_pred ccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEE-EecCHHHHHhhcCEE
Q 040300 462 DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA-YLDSEQRIVAAKVIKRFILHAKKTAFV-VEHDFIMATYLADRV 538 (605)
Q Consensus 462 ~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~-~LD~~~~~~l~~~l~~l~~~~g~tiiv-vsHD~~~~~~~adrv 538 (605)
+..+.-+|+|+++|..++..++.+++++|+|||.. +||......+++.+.+.. ....++++ .|||.+.+..+.+..
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCC
Confidence 45678899999999999999999999999999996 999887766666665542 23456666 499987777766643
|
| >1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=4.2e-07 Score=74.60 Aligned_cols=60 Identities=22% Similarity=0.462 Sum_probs=45.1
Q ss_pred EEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceee-----------ccccccccccccccCCcceEEEecCC
Q 040300 8 IAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFI-----------SEELCIGCGICVKKCPFEAIQIINLP 76 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i-----------~~~~c~~~g~~~~~cp~~ai~i~nl~ 76 (605)
...||.++|. .|+ .|.+.||- .+.++++ +++.+ ++++|++||.|++.||.+||++..-+
T Consensus 3 ~v~vd~~~Ci--gCg-~C~~~CP~------~~~~~~~-g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~~~~ 72 (81)
T 1iqz_A 3 YTIVDKETCI--ACG-ACGAAAPD------IYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADEP 72 (81)
T ss_dssp EEEECTTTCC--CCS-HHHHHCTT------TEEECTT-SCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESSC
T ss_pred EEEEecccCc--ccC-hhhHhCch------heeeCCC-CeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEecCC
Confidence 4578999995 684 69999992 2344432 44443 36899999999999999999998755
Q ss_pred c
Q 040300 77 K 77 (605)
Q Consensus 77 ~ 77 (605)
.
T Consensus 73 ~ 73 (81)
T 1iqz_A 73 F 73 (81)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.8e-07 Score=75.80 Aligned_cols=56 Identities=29% Similarity=0.708 Sum_probs=46.1
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc------cccccCCcceEEEec
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG------ICVKKCPFEAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g------~~~~~cp~~ai~i~n 74 (605)
++++.++|. .|+ .|.+.||.. .|.+++ +...|+.+.|++|| .|++.||++||++..
T Consensus 1 ~~~~~~~C~--~C~-~C~~~CP~~-----ai~~~~--~~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (82)
T 2fgo_A 1 SLKITDDCI--NCD-VCEPECPNG-----AISQGE--EIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDD 62 (82)
T ss_dssp CBCCCTTCC--CCC-TTGGGCTTC-----CEEECS--SSEEECTTTCCTTTTTCSSCHHHHHCTTCCCCBCT
T ss_pred CceeCCCCC--Chh-hHHHHCChh-----ccCCCC--CeEEEEchhCccCCCcCCCCHhHhhCCcccEEccC
Confidence 467889995 785 799999973 555543 45789999999999 999999999998764
|
| >1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A | Back alignment and structure |
|---|
Probab=98.23 E-value=2.1e-07 Score=71.06 Aligned_cols=53 Identities=28% Similarity=0.507 Sum_probs=41.2
Q ss_pred EEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeec--cccccccccccccCCcceEEE
Q 040300 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFIS--EELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~--~~~c~~~g~~~~~cp~~ai~i 72 (605)
.|| ++|. .|+ .|.+.||.+ |.++++.+..+++ ++.|++||.|++.||.+||++
T Consensus 3 ~id-~~C~--~C~-~C~~~CP~~------~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~ 57 (58)
T 1f2g_A 3 EVN-DDCM--ACE-ACVEICPDV------FEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVR 57 (58)
T ss_dssp BCT-TTCC--CCC-HHHHHCTTT------EEECSSSSSEEESCTTCCSTHHHHHHHTCSSCCCBC
T ss_pred EEC-CcCc--cch-HHHHhCCcc------EEECCCCcEEEeCCCccchHHHHHHHhhCChhhEEe
Confidence 467 8995 684 799999962 4455443335677 889999999999999999975
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-06 Score=88.96 Aligned_cols=125 Identities=6% Similarity=0.083 Sum_probs=81.2
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.|+.|+|||||+..++...-- ....+.|+.- .++..++....
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----------~g~~vl~~sl------E~s~~~l~~R~----------- 115 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----------NDDVVNLHSL------EMGKKENIKRL----------- 115 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----------TTCEEEEEES------SSCHHHHHHHH-----------
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cCCeEEEEEC------CCCHHHHHHHH-----------
Confidence 55788899999999999999999888743210 0123555542 24444443211
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcE--EEEEec
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKT--AFVVEH 526 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t--iivvsH 526 (605)
......+.+..+.+.. ..||+++++|++.|...+.++++++.|+|.. ++ ..+...++++..+.+.. +|||.|
T Consensus 116 ~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~--~~---~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 116 IVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQ--SV---NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCC--BH---HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCC--CH---HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 0111122233333211 2499999999999999888899999999974 33 35666677776666777 888876
|
| >2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.1e-07 Score=74.84 Aligned_cols=56 Identities=29% Similarity=0.666 Sum_probs=46.1
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc------cccccCCc-ceEEEec
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG------ICVKKCPF-EAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g------~~~~~cp~-~ai~i~n 74 (605)
|++|.++|. .|+ .|.+.||.. +|.+++ +...|+.+.|++|| .|++.||+ +||++..
T Consensus 1 ~~~~~~~C~--~C~-~C~~~CP~~-----ai~~~~--~~~~~~~~~C~~C~~~~~~~~C~~~CP~~~Ai~~~~ 63 (85)
T 2zvs_A 1 ALLITKKCI--NCD-MCEPECPNE-----AISMGD--HIYEINSDKCTECVGHYETPTCQKVCPIPNTIVKDP 63 (85)
T ss_dssp CEEECTTCC--CCC-TTTTTCTTC-----CEECCS--SSCEECGGGCCTTTTTCSSCHHHHHCSSCCEEECTT
T ss_pred CEEeCCcCc--Chh-HHHHHCchh-----ccCcCC--CceEEeChhccCCCCcCCccHhhHhCcCCCCEEecC
Confidence 578999995 785 799999964 455543 45788999999999 99999999 9998764
|
| >1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2.8e-07 Score=70.50 Aligned_cols=54 Identities=26% Similarity=0.416 Sum_probs=41.0
Q ss_pred EEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeec--cccccccccccccCCcceEEEe
Q 040300 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFIS--EELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~--~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
.+|.++|. .|+ .|.+.||.+ +.++++ +++.+. ++.|++||.|+..||.+||++.
T Consensus 4 ~i~~~~C~--~C~-~C~~~Cp~~------~~~~~~-~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~~ 59 (60)
T 1rof_A 4 RVDADACI--GCG-VCENLCPDV------FQLGDD-GKAKVLQPETDLPCAKDAADSCPTGAISVE 59 (60)
T ss_dssp EECTTTCC--SCC-SSTTTCTTT------BCCCSS-SCCCBSCSSCCSTTHHHHHHHCTTCCEECC
T ss_pred EEchhhCC--CCh-HHHHhCcHH------HeECCC-CCEeecCchhhHHHHHHHHHhCCHhHEEEe
Confidence 57999995 685 699999952 233333 444443 7899999999999999999864
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.20 E-value=2e-06 Score=94.02 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHhh----cCCcEEEEEecCHhHHH
Q 040300 219 GGELQRFAIAVVAVQNAEIYMFDEPS----------SYLDVKQRLKAAQVVRSLL----RPNSYVIVVEHDLSVLD 280 (605)
Q Consensus 219 GGe~QRvaIA~aL~~~p~vlllDEPt----------s~LD~~~r~~~~~~i~~l~----~~g~tvivvsHdl~~l~ 280 (605)
|++++|..++.|....|.+|++||+. ++.|......+.+++..+- ..+..||.+||+.+.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 67788889999999999999999993 3566655555556665552 23678999999987765
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-06 Score=93.11 Aligned_cols=65 Identities=8% Similarity=0.084 Sum_probs=47.8
Q ss_pred HHHHHHhhcCCchhh----cccCCCCChHHHHHHHHH----HHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 040300 196 MKADLCTDLDLNQVI----DRNVGDLSGGELQRFAIA----VVA-VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264 (605)
Q Consensus 196 ~~~~~l~~l~L~~~~----dr~v~~LSGGe~QRvaIA----~aL-~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~ 264 (605)
.+.++++.+++.+.. ..++..+|+|+.|+++++ +++ ..+|++ +|+|++|......+.+.|.++..
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 345677777765432 456778899998988887 555 434454 89999999999999998887653
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.4e-07 Score=85.87 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
.+|+++||+||||||||||+++|+|+++
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999964
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.17 E-value=2.9e-09 Score=108.21 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=65.1
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----C---cceeEeecCcCC-CCCc
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----P---EFNVSYKPQKIS-PKFQ 427 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~---~~~i~y~~q~~~-~~~~ 427 (605)
.+.++++++..| ++|+||||+|||||+++|++.+. .|.+. ...+ . ...+++++|... ....
T Consensus 64 ~l~~~~~~~~~g-------vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 64 RFHEMGARIPKG-------VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHTTCCCCCE-------EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHcCCCCCCe-------EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 456666776666 78999999999999999999885 34332 1100 0 012334444321 1111
Q ss_pred CcHHHHHHhhhccCC-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 428 STVRHLLHQKIRDSY-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 428 ~tv~~~~~~~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
.++.+.+........ ... ... ...++.+.+|||||+||+.|++|+..+|++ ||++.
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~-~~~---------~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~l 195 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGND-ERE---------QTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPAL 195 (278)
T ss_dssp EEEEETHHHHHCC--------CH-HHH---------HHHHHHHHHHTTCCTTCCEEEEEEESCTTS--SCHHH
T ss_pred EEehhhhHhhhcccccccCCcch-HHH---------HHHHHHHHHHhCCCCCCCEEEEEecCCchh--CCHhH
Confidence 122221110000000 001 111 122334567999999999999999999987 67653
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.17 E-value=7.7e-06 Score=85.90 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=37.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc---CCcEEEEEecCHhHHHhh
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR---PNSYVIVVEHDLSVLDYL 282 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~---~g~tvivvsHdl~~l~~~ 282 (605)
..|.++++||+... |......+.+++.++.. .+.++|+++|+.+....+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 45889999999876 88877777777765554 578899999998765544
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-07 Score=90.85 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=32.0
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~ 263 (605)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35688999999999999 99999999999988887654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=7.1e-07 Score=92.15 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=33.2
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCC--CCCceee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLK--PNLGRFN 135 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~--p~~G~i~ 135 (605)
..+|+++||+|+||||||||+++|+|++. |+.|++.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 36899999999999999999999999988 9999874
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.13 E-value=6.9e-06 Score=86.29 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=72.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhc
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPL 455 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l 455 (605)
.+.|.||+|+|||||++.+++.+.+..+ ..+.|+.... ..+..+.+ ..++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~---------~~~~~i~~~~----~~~~~~~~--------------~~l~~~l 98 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTT---------ARFVYINGFI----YRNFTAII--------------GEIARSL 98 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCC---------CEEEEEETTT----CCSHHHHH--------------HHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcC---------eeEEEEeCcc----CCCHHHHH--------------HHHHHHh
Confidence 6899999999999999999998765421 1233333111 11222221 1122222
Q ss_pred CCchhhccCcCcCChhHHHHHHHHHHH-ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh--cCCcEEEEEecCHHHHH
Q 040300 456 LIEQLMDQEVVNLSGGELQRVALCLCL-GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL--HAKKTAFVVEHDFIMAT 532 (605)
Q Consensus 456 ~l~~~~~~~~~~LSGGe~QRvaiA~aL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~g~tiivvsHD~~~~~ 532 (605)
+.. .+....+.++.........- ..+|.+++|||+... |......+.+++.++.. ..+.++|+++|+..+..
T Consensus 99 ~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 99 NIP----FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp TCC----CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred Ccc----CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 221 11122333333322221111 345889999999876 88887777777765532 14788999999886554
Q ss_pred hh
Q 040300 533 YL 534 (605)
Q Consensus 533 ~~ 534 (605)
.+
T Consensus 174 ~l 175 (389)
T 1fnn_A 174 NL 175 (389)
T ss_dssp TS
T ss_pred Hh
Confidence 43
|
| >1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C* | Back alignment and structure |
|---|
Probab=98.11 E-value=7.2e-07 Score=72.57 Aligned_cols=59 Identities=27% Similarity=0.638 Sum_probs=42.9
Q ss_pred EEeCCCCCcccccchhhcccCccccCceEEEEcCCCC----c--eeeccccccccccccccCCcceEEEecCC
Q 040300 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAK----I--AFISEELCIGCGICVKKCPFEAIQIINLP 76 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~--~~i~~~~c~~~g~~~~~cp~~ai~i~nl~ 76 (605)
++|.++|. .|+ .|.+.||.. +|.+++.++ . ..++.+.|++||.|+..||++||++....
T Consensus 4 ~~~~~~C~--~Cg-~C~~~CP~~-----a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~ 68 (80)
T 1jb0_C 4 VKIYDTCI--GCT-QCVRACPTD-----VLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYL 68 (80)
T ss_dssp EEEETTCC--CCC-HHHHHCTTC-----CCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCSSSCSEEEEC
T ss_pred cccCCcCc--Chh-HHHHHCCcc-----cccccccccccccccccCCCCCcCcCcCChhhhCCCCccEeeeec
Confidence 56889995 785 799999964 334433111 1 23567899999999999999999876543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.10 E-value=8.6e-08 Score=97.21 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=25.6
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
.+| ++|+||||+|||||+++|++.+. .|.+
T Consensus 73 ~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i 102 (278)
T 1iy2_A 73 PKG--VLLVGPPGVGKTHLARAVAGEAR--VPFI 102 (278)
T ss_dssp CCE--EEEECCTTSSHHHHHHHHHHHTT--CCEE
T ss_pred CCe--EEEECCCcChHHHHHHHHHHHcC--CCEE
Confidence 456 99999999999999999999874 4544
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-06 Score=89.73 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=28.9
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~ 135 (605)
..|++++|+|+||||||||+|+|+|+.+|+.|++.
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~ 201 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 201 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred hcCCeEEEECCCCCcHHHHHHHhccccccccccee
Confidence 37999999999999999999999999999999875
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-06 Score=82.75 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=28.9
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
+.+|++++|+|||||||||++++|++.+.|+.|
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 345689999999999999999999999977766
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=7.5e-08 Score=96.14 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=25.5
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
.+| ++|+||||+|||||+++|++.+. .|.+
T Consensus 49 ~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i 78 (254)
T 1ixz_A 49 PKG--VLLVGPPGVGKTHLARAVAGEAR--VPFI 78 (254)
T ss_dssp CSE--EEEECCTTSSHHHHHHHHHHHTT--CCEE
T ss_pred CCe--EEEECCCCCCHHHHHHHHHHHhC--CCEE
Confidence 456 99999999999999999999874 4544
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=6e-09 Score=104.15 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=72.0
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----C---cceeEeecCcCCC-CCc
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----P---EFNVSYKPQKISP-KFQ 427 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~---~~~i~y~~q~~~~-~~~ 427 (605)
.+.++++++..| +.|+||||+|||||+++|++... .|.+. +... . ...+++++|.... ...
T Consensus 40 ~~~~~~~~~~~g-------~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 40 RFHEMGARIPKG-------VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHTTCCCCSE-------EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHcCCCCCCe-------EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 356666666666 78999999999999999999875 33332 1100 0 0123344443211 111
Q ss_pred CcHHHHHHh-h-hccC---CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC------
Q 040300 428 STVRHLLHQ-K-IRDS---YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA------ 496 (605)
Q Consensus 428 ~tv~~~~~~-~-~~~~---~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~------ 496 (605)
.++.+.+.. . .+.. .... ... ...++.+..|||||+||+.|++|+..+|++ ||++..
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~-~~~---------~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~r~~rf~ 178 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGND-ERE---------QTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRFD 178 (254)
T ss_dssp EEEEETHHHHHC---------CH-HHH---------HHHHHHHHHHHTCCTTCCEEEEEEESCGGG--SCGGGGSTTSSC
T ss_pred EEEehhhhhhhcccCccccccch-HHH---------HHHHHHHHHHhCCCCCCCEEEEEccCCchh--CCHHHcCCCcCC
Confidence 111111110 0 0000 0001 111 112333567999999999999999999987 677653
Q ss_pred ------CCCHHHHHHHHH
Q 040300 497 ------YLDSEQRIVAAK 508 (605)
Q Consensus 497 ------~LD~~~~~~l~~ 508 (605)
..|.+.|..+++
T Consensus 179 ~~i~i~~p~~~~r~~il~ 196 (254)
T 1ixz_A 179 RQIAIDAPDVKGREQILR 196 (254)
T ss_dssp EEEECCSCCHHHHHHHHH
T ss_pred eEEeeCCcCHHHHHHHHH
Confidence 246666666554
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.5e-05 Score=83.48 Aligned_cols=141 Identities=15% Similarity=0.103 Sum_probs=78.5
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcC--CCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQ 446 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl--~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 446 (605)
|-+.+|+++.|.||+|+|||||+..++.. .++..|. ...++.|+.-+.. + ....+......... +.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg------~~~~vlyi~~E~~--~--~~~~l~~~~~~~g~-~~- 184 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY------PGGKIIFIDTENT--F--RPDRLRDIADRFNV-DH- 184 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB------CCCEEEEEESSSC--C--CHHHHHHHHHHTTC-CH-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC------CCCeEEEEECCCC--C--CHHHHHHHHHHcCC-CH-
Confidence 56888899999999999999999998874 3222110 1124556654321 1 12222111000111 11
Q ss_pred HHHHHHhhcCCchhhccCcCcCChhHH-HHHHHHHHHc----cCCCEEEEecCCCCCCHH--------H----HHHHHHH
Q 040300 447 FVSDVMKPLLIEQLMDQEVVNLSGGEL-QRVALCLCLG----KPADIYLIDEPSAYLDSE--------Q----RIVAAKV 509 (605)
Q Consensus 447 ~~~~~l~~l~l~~~~~~~~~~LSGGe~-QRvaiA~aL~----~~p~lllLDEPt~~LD~~--------~----~~~l~~~ 509 (605)
.++++.+-+. ...++.+. +.+..++.++ .+++++++|+.++.+... . ...++..
T Consensus 185 --~~~l~~l~~~-------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~ 255 (343)
T 1v5w_A 185 --DAVLDNVLYA-------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSR 255 (343)
T ss_dssp --HHHHHTEEEE-------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHH
T ss_pred --HHHHhceeEe-------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 1233322111 11233333 3444455554 679999999999887542 1 2455566
Q ss_pred HHHHHhcCCcEEEEEecCHHH
Q 040300 510 IKRFILHAKKTAFVVEHDFIM 530 (605)
Q Consensus 510 l~~l~~~~g~tiivvsHD~~~ 530 (605)
|++++++.+.+||+++|-...
T Consensus 256 L~~la~~~~~~Vi~~nq~~~~ 276 (343)
T 1v5w_A 256 LQKISEEYNVAVFVTNQMTAD 276 (343)
T ss_dssp HHHHHHHHTCEEEEEECC---
T ss_pred HHHHHHHhCCEEEEEeeceec
Confidence 677777779999999997543
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-05 Score=82.57 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=29.3
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
.+|+++.|.||||+|||||+..+++...+..|.+
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 5899999999999999999999998876655543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-06 Score=82.65 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=29.5
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG 132 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G 132 (605)
.+|++++|+|+|||||||++++|++.+.|+.|
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 58999999999999999999999999977655
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.9e-06 Score=97.21 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=40.2
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRS 261 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~ 261 (605)
...+|+|++|++..++....++.+|+|||... |++.....+.++|.+
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 36799999999999999999999999999988 899988888888874
|
| >1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-06 Score=67.67 Aligned_cols=56 Identities=27% Similarity=0.390 Sum_probs=42.6
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCce-eec----c-ccccccccccccCCcceEEEec
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIA-FIS----E-ELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~i~----~-~~c~~~g~~~~~cp~~ai~i~n 74 (605)
.++|.++|. .| ..|.+.||- .|.++++ +++ +++ + ..|++||.|++.||.+||++..
T Consensus 4 ~~id~~~C~--~C-~~C~~~Cp~------~~~~~~~-~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~~ 65 (66)
T 1sj1_A 4 VSVDQDTCI--GD-AICASLCPD------VFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE 65 (66)
T ss_dssp EEECTTTCC--CC-CHHHHHCTT------TEEECTT-SCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEECcccCc--Cc-hHHHHhCCc------eEEECCC-CceeecccCCCcHHHHHHHHHHHhhCCHhhEEEec
Confidence 368999995 68 579999992 4566543 444 444 4 5689999999999999999864
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-07 Score=92.77 Aligned_cols=52 Identities=33% Similarity=0.501 Sum_probs=39.8
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceee
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~ 135 (605)
..|++.|+.. .|+. +|.+. + ++++|+||||||||||+++|+|.+.|+.|.+.
T Consensus 8 ~~l~l~~~~~--------~~~~-~~~~~------~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~ 59 (227)
T 1qhl_A 8 RSLTLINWNG--------FFAR-TFDLD------E-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLH 59 (227)
T ss_dssp EEEEEEEETT--------EEEE-EECHH------H-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-
T ss_pred eEEEEEeeec--------ccCC-EEEEc------C-cEEEEECCCCCCHHHHHHHHhcccccCCCeEE
Confidence 4677777654 2332 34442 3 89999999999999999999999999999763
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-06 Score=82.08 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=32.3
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 040300 476 VALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI 514 (605)
Q Consensus 476 vaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 514 (605)
...|++|+.+|+++++| ||++|.....++++.|.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35688999999999999 99999999999998887754
|
| >3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-06 Score=82.15 Aligned_cols=55 Identities=36% Similarity=0.746 Sum_probs=40.7
Q ss_pred eCCCCCcccccchhhcccCccccCceEEEEcCCC--------------CceeeccccccccccccccCCcceEEEec
Q 040300 12 SSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAA--------------KIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------------~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
|.|+|. .|+ .|...||.. +|.+.... ....++.+.|++||.|+..||++||.+.+
T Consensus 49 d~~~Ci--~C~-~C~~~CP~~-----ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 117 (182)
T 3i9v_9 49 GLEKCI--GCS-LCAAACPAY-----AIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGY 117 (182)
T ss_dssp SCBSCC--CCC-HHHHHCTTC-----CEEEEEECCCSSSCSSSSSCEEEEEEEETTTCCCCCHHHHHCSSSCEEECS
T ss_pred CCccCc--ccc-cchhhCCcc-----cEEeecccccccccccccccccceeecCCCcCcChhChhhhCCccceEecC
Confidence 346784 685 799999974 33333211 13467888999999999999999999875
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.4e-06 Score=80.76 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=26.9
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKP 129 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p 129 (605)
.+|++++|+||||||||||++.|++.+++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 47999999999999999999999998764
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.8e-06 Score=80.03 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=33.2
Q ss_pred eeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeee
Q 040300 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404 (605)
Q Consensus 360 ~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~ 404 (605)
++++|++.+| +++|+||||||||||+++|.+++.+..|.
T Consensus 18 ~~~~~~~~~g------~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG------FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS------EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC------cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 5677777766 79999999999999999999998887653
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.99 E-value=1e-05 Score=85.48 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=46.0
Q ss_pred HHHHhhcCCchhh----ccCcCcCChhHHHHHHHH----HHH-ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 040300 449 SDVMKPLLIEQLM----DQEVVNLSGGELQRVALC----LCL-GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515 (605)
Q Consensus 449 ~~~l~~l~l~~~~----~~~~~~LSGGe~QRvaiA----~aL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 515 (605)
.++++.+++.+.. ..++..+|+|++||+.++ +.+ ..+|++ +|+|++|......+.+.|.++..
T Consensus 282 ~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 282 FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4566666654322 345677899988988877 666 444454 89999999999999999988654
|
| >1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.6e-06 Score=91.74 Aligned_cols=58 Identities=29% Similarity=0.645 Sum_probs=45.7
Q ss_pred EEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceee-ccccccccccccccCCcceEEE-ec
Q 040300 8 IAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFI-SEELCIGCGICVKKCPFEAIQI-IN 74 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i-~~~~c~~~g~~~~~cp~~ai~i-~n 74 (605)
+.++|.++|. .|+ .|.+.||.+ +|.... .....| +++.|++||.|+..||++||.+ .+
T Consensus 27 ~i~~d~~kCi--~Cg-~C~~~CP~~-----ai~~~~-~~~~~i~~~~~C~~Cg~C~~~CP~~Ai~~~~~ 86 (421)
T 1hfe_L 27 FVQIDEAKCI--GCD-TCSQYCPTA-----AIFGEM-GEPHSIPHIEACINCGQCLTHCPENAIYEAQS 86 (421)
T ss_dssp SEEECTTTCC--CCC-HHHHHCTTC-----CCBCCT-TSCCBCCCGGGCCCCCTTGGGCTTCCEEESCC
T ss_pred eEEECcccCC--Ccc-HHHHhcCcC-----ceeccc-ccceeecChhhCCchhhHHHhhCcCCcccccc
Confidence 5789999995 795 799999984 444333 223345 8999999999999999999988 54
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.5e-06 Score=89.77 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~ 135 (605)
+.+|++++|+|+||+|||||+|+|+|...|..|++.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 357999999999999999999999999999999875
|
| >1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=3.3e-06 Score=92.19 Aligned_cols=59 Identities=24% Similarity=0.605 Sum_probs=49.7
Q ss_pred EEEeCCCCCcccccc-hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEec
Q 040300 9 AIVSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
..++.++|. .|.. .|.+.||. .+|...+.++++.|+++.|+|||.|++.||++||++.+
T Consensus 177 i~~~~~~C~--~C~~~~Cv~aCP~-----gAI~~~~~~g~v~id~~kCigCg~Cv~~CP~~AI~~~~ 236 (512)
T 1q16_B 177 MMYLPRLCE--HCLNPACVATCPS-----GAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNW 236 (512)
T ss_dssp CEEEEECCC--CCSSCHHHHTCTT-----CCEEEETTTCCEEECTTTCCCCCCHHHHCTTCCEEEET
T ss_pred EEecCccCc--CCCCchhhhhCCc-----CcEEeecCCCeEEECHHHCCCchHHHhhCCccceeccc
Confidence 456888996 5975 89999995 36777655678999999999999999999999998875
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.96 E-value=6e-06 Score=85.48 Aligned_cols=122 Identities=11% Similarity=0.182 Sum_probs=75.0
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
+.+|+++.|.|++|+|||||+.-++...--....+ .+|...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~v----------l~~slE----------------------------- 105 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVV----------NLHSLE----------------------------- 105 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEE----------EEEESS-----------------------------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE----------EEEECC-----------------------------
Confidence 46999999999999999999888774321000000 001000
Q ss_pred hhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 040300 180 VQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259 (605)
Q Consensus 180 ~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i 259 (605)
........++......+++..+.+.. ..||.++.+|++.|...+.++.+++.|+|.. ++. ++...+
T Consensus 106 --------~s~~~l~~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~--~~~---~i~~~i 171 (315)
T 3bh0_A 106 --------MGKKENIKRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQ--SVN---YIWSKT 171 (315)
T ss_dssp --------SCHHHHHHHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCC--BHH---HHHHHH
T ss_pred --------CCHHHHHHHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCC--CHH---HHHHHH
Confidence 00011122222223333444443222 2399999999999999999999999999874 433 355666
Q ss_pred HHhhcC-CcE--EEEEec
Q 040300 260 RSLLRP-NSY--VIVVEH 274 (605)
Q Consensus 260 ~~l~~~-g~t--vivvsH 274 (605)
+++.++ +.. +|||.|
T Consensus 172 ~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 172 RQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHTSSSCCEEEEEEC
T ss_pred HHHHHhcCCCCeEEEEeC
Confidence 666543 666 888887
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=4.1e-06 Score=100.07 Aligned_cols=66 Identities=23% Similarity=0.743 Sum_probs=54.3
Q ss_pred ceEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCc-ceEEEecCC
Q 040300 5 LTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF-EAIQIINLP 76 (605)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~-~ai~i~nl~ 76 (605)
...++.+|.|+|. .| ..|.+.||.. +-.+|.+++..+++.++ +.|+|||.|++.||. +||++..-+
T Consensus 942 ~~~~~~id~~~C~--~C-g~C~~~CP~~--~~~ai~~~~~~~~~~~~-~~C~~Cg~C~~~CP~~~Ai~~~~~~ 1008 (1025)
T 1gte_A 942 EQVVAVIDEEMCI--NC-GKCYMTCNDS--GYQAIQFDPETHLPTVT-DTCTGCTLCLSVCPIIDCIRMVSRT 1008 (1025)
T ss_dssp SCEEEEECTTTCC--CC-CHHHHHHHHH--SCSCEEECTTTCCEEEC-TTCCCCCHHHHHCSSTTTEEEEECC
T ss_pred ccceEEEEcccCc--cc-CHHHHhcCcc--ccCCEEEeCCCceEEeC-ccCCChhHHHhhCCCCCCEEEecCc
Confidence 4567899999995 69 5799999973 33478887765678888 899999999999999 999988644
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.92 E-value=4.4e-06 Score=78.59 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=29.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
.+| +.+|+|+|||||||++++|.+.+.+..|..
T Consensus 25 ~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 57 (182)
T 3kta_A 25 SKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKA 57 (182)
T ss_dssp CSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 367 999999999999999999999998876653
|
| >3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B* | Back alignment and structure |
|---|
Probab=97.92 E-value=1.3e-06 Score=92.48 Aligned_cols=55 Identities=22% Similarity=0.463 Sum_probs=45.3
Q ss_pred EeCCCCCccccc-chhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEE
Q 040300 11 VSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQ 71 (605)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~ 71 (605)
||.++| .+.|. ..|++.||. .||..++++++..|+++.|++||.|++.||++||+
T Consensus 202 id~~~c-~~~Ce~~~Cv~~CP~-----~AI~~~~~~~~~~id~~~C~~Cg~C~~~CP~~Ai~ 257 (366)
T 3mm5_B 202 PNDEAI-RKTCEIPSTVAACPT-----GALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLF 257 (366)
T ss_dssp CCHHHH-HHHCCHHHHHHTCTT-----CCEEEETTTTEEEECGGGCCCCCHHHHHCTTCCCC
T ss_pred Ecchhc-cccccccchhccCCc-----cceEecCCCCeEEEehhhCCCcchHHHhCCHhhcc
Confidence 566666 33453 689999996 37888766789999999999999999999999984
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=5.9e-05 Score=78.18 Aligned_cols=139 Identities=12% Similarity=0.121 Sum_probs=77.7
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCC-CCCe-eeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLL-KPDS-VEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQ 446 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~-~p~~-G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 446 (605)
|-+.+|+++.|.||+|+|||||+..++... .|.. |. ...++.|+.-+.. + ....+......... +.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg------~~~~vlyi~~e~~--~--~~~~l~~~~~~~g~-~~- 169 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG------LSGKAVYIDTEGT--F--RWERIENMAKALGL-DI- 169 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC------CSCEEEEEESSSC--C--CHHHHHHHHHHTTC-CH-
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC------CCCeEEEEECCCC--C--CHHHHHHHHHHhCC-CH-
Confidence 567888999999999999999998888642 3321 10 0124556543321 1 12222111000011 11
Q ss_pred HHHHHHhhcCCchhhccCcCcCChhH-HHHHHHHHHHc---cCCCEEEEecCCCCCCH--------HH----HHHHHHHH
Q 040300 447 FVSDVMKPLLIEQLMDQEVVNLSGGE-LQRVALCLCLG---KPADIYLIDEPSAYLDS--------EQ----RIVAAKVI 510 (605)
Q Consensus 447 ~~~~~l~~l~l~~~~~~~~~~LSGGe-~QRvaiA~aL~---~~p~lllLDEPt~~LD~--------~~----~~~l~~~l 510 (605)
.++++.+-+ ....+..+ .+.+..++.++ .+++++++|+.++.+.. .. ...++..|
T Consensus 170 --~~~~~~l~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L 240 (324)
T 2z43_A 170 --DNVMNNIYY-------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQL 240 (324)
T ss_dssp --HHHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHH
T ss_pred --HHHhccEEE-------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHH
Confidence 122222111 11123332 24566666666 67999999999987643 12 24455566
Q ss_pred HHHHhcCCcEEEEEecCH
Q 040300 511 KRFILHAKKTAFVVEHDF 528 (605)
Q Consensus 511 ~~l~~~~g~tiivvsHD~ 528 (605)
++++++.+.+||++.|-.
T Consensus 241 ~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 241 TRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHhCCEEEEEccee
Confidence 666667799999999854
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=4.5e-06 Score=78.88 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=25.6
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
+|++++|+||||||||||+++|++..++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 4689999999999999999999998864
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.6e-06 Score=85.20 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=31.7
Q ss_pred CCCcEEEEECCCCChHHHHHHHHh---cCCCCCCcee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILA---GKLKPNLGRF 134 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~---G~l~p~~G~i 134 (605)
.+|++++|+|+|||||||++++|+ |...|+.|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i 61 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAI 61 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCce
Confidence 689999999999999999999999 9988888876
|
| >2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum} | Back alignment and structure |
|---|
Probab=97.87 E-value=6.2e-06 Score=86.37 Aligned_cols=61 Identities=28% Similarity=0.673 Sum_probs=50.0
Q ss_pred EEEEeCCCCCcccccc-hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecC
Q 040300 8 IAIVSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINL 75 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl 75 (605)
...++.++|. .|.. .|.+.||. | +|..+++++...|+.+.|+|||.|++.||++||.+.+.
T Consensus 143 ~~~~~~~~C~--~C~~~~Cv~~CP~---g--Ai~~~~~~g~v~id~~kCigCg~Cv~aCP~~Ai~~~~~ 204 (352)
T 2ivf_B 143 FFFYLARMCN--HCTNPACLAACPT---G--AIYKREDNGIVLVDQERCKGHRHCVEACPYKAIYFNPV 204 (352)
T ss_dssp ECEEEEECCC--CCSSCHHHHHCTT---C--CEEECTTTCCEEECTTTCCCCCHHHHHCTTCCEEEETT
T ss_pred EEEECCCCCc--CcCCccccccCCC---C--ceeecCCCCeEEechhhcCCchHHHhhcCccceecccc
Confidence 4467778884 6864 89999994 3 66666656788999999999999999999999998763
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.86 E-value=3.4e-05 Score=83.13 Aligned_cols=34 Identities=29% Similarity=0.242 Sum_probs=29.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
.++.+++++|+||+||||++..|++.+.+..+++
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV 128 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV 128 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 3589999999999999999999999887654444
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.9e-06 Score=84.86 Aligned_cols=35 Identities=29% Similarity=0.269 Sum_probs=31.3
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHH---cCCCCCeeeee
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLA---GLLKPDSVEDS 406 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~---Gl~~p~~G~i~ 406 (605)
.+|++++|+|||||||||++++|+ |+..+++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 356899999999999999999999 99999988763
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.84 E-value=4.2e-05 Score=80.05 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=24.7
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcC
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
+.+|+++.|.|++|+|||||+..++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999998875
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.83 E-value=5.6e-07 Score=88.92 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=29.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCCCeeeee
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS 406 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~ 406 (605)
++++|+||||||||||+++|+|++.|++|.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~ 59 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLH 59 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEE
Confidence 57999999999999999999999999998763
|
| >2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B* | Back alignment and structure |
|---|
Probab=97.81 E-value=8.3e-06 Score=78.58 Aligned_cols=57 Identities=25% Similarity=0.714 Sum_probs=44.8
Q ss_pred EEeCCCCCcccccc-hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEec
Q 040300 10 IVSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
.++.++|. .|+. .|.+.||.. +|...+ ++...|+++.|+|||.|+..||++||++.+
T Consensus 52 ~~~~~~C~--~C~~p~C~~~CP~g-----Ai~~~~-~g~~~id~~~CigC~~C~~~CP~~Ai~~~~ 109 (195)
T 2vpz_B 52 EFRPEQCL--HCENPPCVPVCPTG-----ASYQTK-DGLVLVDPKKCIACGACIAACPYDARYLHP 109 (195)
T ss_dssp EEEEEECC--CCSSCTTTTTCSSS-----CEEECT-TSCEEECTTTCCCCCHHHHHCTTCCCEECT
T ss_pred EECcccCc--CccCcHHHHhcCCC-----ceeccc-ccceeecCCCCCCcChhHhhCCCCCeEECC
Confidence 34556774 5764 899999964 455544 467899999999999999999999998754
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.80 E-value=1.5e-05 Score=83.29 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=25.6
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKP 129 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p 129 (605)
..+..+.|.|++|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999987654
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.80 E-value=1e-05 Score=78.27 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=28.4
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNL 131 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~ 131 (605)
.+|++++|+||||||||||++.|++.++|..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~ 36 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSF 36 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcE
Confidence 5899999999999999999999999987743
|
| >3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.7e-06 Score=90.48 Aligned_cols=56 Identities=20% Similarity=0.524 Sum_probs=44.0
Q ss_pred EeCCCCCccccc-chhhcccCccccCceEEEEcC---CC---CceeeccccccccccccccCCcceEEE
Q 040300 11 VSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTP---AA---KIAFISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~---~~---~~~~i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
||.|+| .+.|. -+|+.+||.. ||..++ +. ++..|+++.|++||.|++.||++||+.
T Consensus 213 id~e~~-~~~Ce~~~cv~~CPt~-----AI~~~~~~~~g~~~~~v~id~~~Ci~Cg~C~~~CP~~Ai~~ 275 (386)
T 3or1_B 213 IDHENL-AELCEIPLAVAACPTA-----AVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPALPLSD 275 (386)
T ss_dssp CCTTTH-HHHCCHHHHHHHCTTC-----CEEEEEEEETTEEEEEEEECTTTCCCCCHHHHHCTTCCCCC
T ss_pred echhhh-cccccchhhhhhCchh-----hccccccccCCccccccccCCCcCCccccHHHhCcHhhCcC
Confidence 677887 45564 6899999964 666643 22 358999999999999999999999963
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.79 E-value=6e-05 Score=76.50 Aligned_cols=62 Identities=21% Similarity=0.190 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHhhc----CCcEEEEEecCHhHH
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK----------QRLKAAQVVRSLLR----PNSYVIVVEHDLSVL 279 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~----------~r~~~~~~i~~l~~----~g~tvivvsHdl~~l 279 (605)
+++++++..++.+...+|.+|++||+.+.++.. ....+...+..+.. .+..||.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l 172 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQEL 172 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGB
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhC
Confidence 356777778888888899999999998776532 22334444444432 235677788876543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.2e-05 Score=77.86 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=26.3
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
+|++++|+||||||||||+++|++.++|
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 5689999999999999999999999887
|
| >1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B* | Back alignment and structure |
|---|
Probab=97.77 E-value=9.6e-06 Score=83.17 Aligned_cols=57 Identities=35% Similarity=0.849 Sum_probs=44.9
Q ss_pred EeCCCCCcccccc-hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEec
Q 040300 11 VSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
++.+.|. .|.. .|.+.||.. | +|...+ ++...|+++.|+|||.|+..||++||++.+
T Consensus 95 ~~~~~C~--~C~~~~C~~~CP~~--g--Ai~~~~-~g~v~id~~~CigCg~C~~~CP~~ai~~~~ 152 (294)
T 1kqf_B 95 IRKDGCM--HCEDPGCLKACPSA--G--AIIQYA-NGIVDFQSENCIGCGYCIAGCPFNIPRLNK 152 (294)
T ss_dssp EEEESCC--CBSSCHHHHHCCST--T--SEEEET-TSCEEECGGGCCCCCHHHHHCTTCCCEEET
T ss_pred ECcccCC--CcCChhhhhhCCcc--C--cccccc-ccceEeCcccCCCcchhhhcCCCCCcEecC
Confidence 4567884 7864 899999962 2 455443 477889999999999999999999998753
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=5e-05 Score=78.76 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=36.1
Q ss_pred HHHHHHHHHc---cCCCEEEEeCCCCCCCH--------HHH----HHHHHHHHHhhc-CCcEEEEEecCHhH
Q 040300 223 QRFAIAVVAV---QNAEIYMFDEPSSYLDV--------KQR----LKAAQVVRSLLR-PNSYVIVVEHDLSV 278 (605)
Q Consensus 223 QRvaIA~aL~---~~p~vlllDEPts~LD~--------~~r----~~~~~~i~~l~~-~g~tvivvsHdl~~ 278 (605)
+.+..++.++ .+++++++|+.++.+.. ..+ ..++..|+.+++ .+.+||++.|-...
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~ 260 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR 260 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence 4566666666 67999999999987643 122 334444555554 38999999986544
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.2e-05 Score=77.09 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+|++++|+|+|||||||++++|+|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999999999976
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.71 E-value=7.2e-06 Score=78.89 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
+.+|++++|+|+|||||||+++.|++.++|..|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v 53 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV 53 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence 35799999999999999999999999987776665
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.71 E-value=1.5e-05 Score=76.52 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=24.0
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+|++++|+||||||||||+++|+|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45899999999999999999999976
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=1.9e-05 Score=85.59 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=36.4
Q ss_pred HccCCCEEEEecCCCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEecC
Q 040300 482 LGKPADIYLIDEPSAYLDS-EQRIVAAKVIKRFILHAKKTAFVVEHD 527 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~-~~~~~l~~~l~~l~~~~g~tiivvsHD 527 (605)
+..++++|++||+....+. ..+..+..++.++. +.++.+|++||+
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~ 236 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDR 236 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESS
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECC
Confidence 3358999999999887764 67788889998875 458889999997
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.69 E-value=7.3e-05 Score=80.54 Aligned_cols=121 Identities=16% Similarity=0.213 Sum_probs=66.0
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHh
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMK 453 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~ 453 (605)
+.+++++|+||+||||++..|++.+.+..++ +.++.-+. +.....+.+. .+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~k----------Vllv~~D~---~r~~a~eqL~--------------~~~~ 149 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYK----------VGLVAADV---YRPAAYDQLL--------------QLGN 149 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCC----------EEEEEECC---SCHHHHHHHH--------------HHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCe----------EEEEecCc---cchhHHHHHH--------------HHHH
Confidence 4689999999999999999999988765443 33333221 1101111111 1111
Q ss_pred hcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC-CC--CCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 040300 454 PLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS-AY--LDSEQRIVAAKVIKRFILHAKKTAFVVE 525 (605)
Q Consensus 454 ~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt-~~--LD~~~~~~l~~~l~~l~~~~g~tiivvs 525 (605)
..++.-... ....+--...+-+++.+...++|++|+|+|. .+ .|.....++.++++.+ . ...++++++
T Consensus 150 ~~gv~~~~~--~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~-~-pd~vlLVlD 220 (433)
T 3kl4_A 150 QIGVQVYGE--PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL-K-PDDVILVID 220 (433)
T ss_dssp TTTCCEECC--TTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH-C-CSEEEEEEE
T ss_pred hcCCceeec--cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh-C-CcceEEEEe
Confidence 222211100 0011111222335666666789999999997 45 7887777777765554 2 234444443
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=7.3e-06 Score=78.69 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=26.8
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeee
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~ 404 (605)
+|++++|+||||||||||+++|++.+. ..|.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~ 54 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY-QKGK 54 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCc
Confidence 357999999999999999999999886 4454
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=5.6e-05 Score=81.81 Aligned_cols=44 Identities=7% Similarity=0.169 Sum_probs=37.0
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHhhcCCcEEEEEecCH
Q 040300 233 QNAEIYMFDEPSSYLDV-KQRLKAAQVVRSLLRPNSYVIVVEHDL 276 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~-~~r~~~~~~i~~l~~~g~tvivvsHdl 276 (605)
.+|++||+||+....+. .....++..+..+.+.++.||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 567778889988887789999999973
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=8.2e-06 Score=78.33 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=29.6
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
..+|++++|+|+|||||||++++|++.+. ..|.+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 36899999999999999999999999886 55643
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00013 Score=74.05 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCH----------HHHHHHHHHHHHHHhc---CCcEEEEEecCHHH----H
Q 040300 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDS----------EQRIVAAKVIKRFILH---AKKTAFVVEHDFIM----A 531 (605)
Q Consensus 469 SGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~----------~~~~~l~~~l~~l~~~---~g~tiivvsHD~~~----~ 531 (605)
+++++.|..++.+...+|.+|++||+.+.++. .....++..+..+... .+..+|.+|++.+. +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 36777888888888889999999999877653 2223344444443211 23456777886421 2
Q ss_pred HhhcCEEEEE
Q 040300 532 TYLADRVIVY 541 (605)
Q Consensus 532 ~~~adrviv~ 541 (605)
.+-+++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 2235666554
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.68 E-value=9.3e-06 Score=78.11 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=28.9
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeeee
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i 405 (605)
+|++++|+|+||||||||+++|++.+++..|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v 53 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISV 53 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence 457999999999999999999999987776654
|
| >3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=6.9e-06 Score=91.93 Aligned_cols=63 Identities=21% Similarity=0.522 Sum_probs=46.2
Q ss_pred EEEEeCCCCCcccccchhhcccCccccCceEEEEcCCC--------CceeeccccccccccccccCCcceEEEec
Q 040300 8 IAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAA--------KIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
..++|.++|. .|+ .|.+.||.+ .|..+|.+.+.. ....|+++.|++||.|+..||++||++.+
T Consensus 139 ~i~~d~~kCi--~Cg-~Cv~~CP~~-~~~~ai~~~~~g~~~~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~ 209 (574)
T 3c8y_A 139 SLTVDRTKCL--LCG-RCVNACGKN-TETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEKS 209 (574)
T ss_dssp SEEEEGGGCC--CCC-HHHHHHHHH-HSCCCSEEEEETTEEEEESGGGCCGGGSSCCCCCHHHHHCSSTTEEECC
T ss_pred cceeCcccCc--CCC-CccchhCch-hcCCceeeccCCccceecccccceechhhCCcchhHHHhhccCCccccc
Confidence 4578999995 785 599999962 112233333221 13568999999999999999999999875
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=8.2e-05 Score=73.18 Aligned_cols=45 Identities=4% Similarity=0.120 Sum_probs=31.2
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEec-CH
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR--PNSYVIVVEH-DL 276 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~--~g~tvivvsH-dl 276 (605)
..+|+++|+..+.+.++......+..++..+.. ...++|+++| |+
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 357899999999989988766666555544322 1257888888 44
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.64 E-value=2.1e-05 Score=80.85 Aligned_cols=64 Identities=11% Similarity=-0.005 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHHc--cCCCEEEEecCCCCCCHHH-HHHHHHHHHHHHhcCCc--EEEEEecCHHHHHhhcCEE
Q 040300 468 LSGGELQRVALCLCLG--KPADIYLIDEPSAYLDSEQ-RIVAAKVIKRFILHAKK--TAFVVEHDFIMATYLADRV 538 (605)
Q Consensus 468 LSGGe~QRvaiA~aL~--~~p~lllLDEPt~~LD~~~-~~~l~~~l~~l~~~~g~--tiivvsHD~~~~~~~adrv 538 (605)
+|+|++ .+++.+. ..|.++++ |.+|... +..+.+.+.++....+. .+.+++|+-.-+..+.|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 898886 5566665 68999998 8999876 67788888887654453 5556667655555555544
|
| >3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=7.8e-06 Score=87.47 Aligned_cols=41 Identities=29% Similarity=0.499 Sum_probs=35.8
Q ss_pred chhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceE
Q 040300 23 QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAI 70 (605)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai 70 (605)
.+|+..||.. ||..+ +++..|+++.|++||.|++.||+.++
T Consensus 261 ~~cv~~CPt~-----Ai~~~--~~~~~id~~~Ci~Cg~Ci~~CP~~~~ 301 (418)
T 3mm5_A 261 NEVVKLCPTG-----AIKWD--GKELTIDNRECVRCMHCINKMPKALK 301 (418)
T ss_dssp HHTGGGCTTC-----CEEEC--SSCEEECTTTCCCCCHHHHHCTTTEE
T ss_pred ccccccCCcc-----ccccC--CceeEEChhhcCccChhHHhCcHhhc
Confidence 5899999974 88875 47899999999999999999999654
|
| >1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5 | Back alignment and structure |
|---|
Probab=97.63 E-value=1.6e-05 Score=77.71 Aligned_cols=59 Identities=15% Similarity=0.381 Sum_probs=46.4
Q ss_pred EeCCCCCcccccc-hhhcccCccccCceEEEEcCCCCceeecccccc--ccccccccCCcceEEEe
Q 040300 11 VSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCI--GCGICVKKCPFEAIQII 73 (605)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~--~~g~~~~~cp~~ai~i~ 73 (605)
.+.++|. .|+. +|.+.||..-+| +|...++.+...|+++.|+ |||.|++.||++||++.
T Consensus 67 ~~~~~C~--~C~~p~C~~~CP~~~~g--Ai~~~~~~g~v~id~~~C~~~~C~~C~~~CP~~Ai~~~ 128 (214)
T 1h0h_B 67 FFPDQCR--HCIAPPCKATADMEDES--AIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKV 128 (214)
T ss_dssp EEEECCC--CCSSCHHHHHHTTTCTT--SEEECTTTCCEEECGGGGGCSCHHHHHHHCTTCCCEEC
T ss_pred ecCCcCc--CcCCchhhccCCccccc--cEEecCCCCeEEEeHHHCccccccHHHHhcCCCCeEec
Confidence 3567774 6875 799999944344 5555554578999999999 99999999999999875
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=8.8e-05 Score=80.58 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSS-YLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts-~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l 279 (605)
.+.+....+...+.++|++||....+ ++... ..+++++++ +.++.+|+|-+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~---~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILY---RTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHT---TCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHH---HcCCCEEEEEECccch
Confidence 46677778888888899877766554 34443 334555544 3578888888876654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00021 Score=73.99 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
..+|++++++|+||+||||++..|++.+.+..|++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kV 136 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKV 136 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 46899999999999999999999999998877765
|
| >1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.7e-05 Score=78.93 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=39.8
Q ss_pred CCCCcccccc-hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEe
Q 040300 14 DRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 14 ~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
.+|. .|.. +|.+.||. +|..++ ++...|+++.|+|||.|++.||++||++.
T Consensus 66 ~~C~--~C~~p~C~~~CP~------Ai~~~~-~g~v~id~~~CigC~~C~~~CP~~Ai~~~ 117 (274)
T 1ti6_B 66 TPCM--HCENAPCVAKGNG------AVYQRE-DGIVLIDPEKAKGKKELLDTCPYGVMYWN 117 (274)
T ss_dssp ECCC--CCTTCHHHHHTTT------SEEECT-TSCEEECTTTTTTCGGGGGGCSSCCCEEE
T ss_pred CcCC--CCCChHHHhhChH------Hhhhcc-CCcEEechhhccchHHHHhhCccCCeEEE
Confidence 4553 4543 69999996 233433 47789999999999999999999999875
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.63 E-value=2.6e-05 Score=75.24 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=26.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
.+|++++|+||||||||||++.|.+.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999999875
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.63 E-value=1.4e-05 Score=83.57 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
..+.|.||+|+|||||++.+++.+.+
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999987654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=1.8e-05 Score=77.78 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=25.5
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcC
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
..+|++++|.|+|||||||++++|+|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999999998
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=5.8e-05 Score=85.95 Aligned_cols=46 Identities=13% Similarity=0.022 Sum_probs=33.7
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l 279 (605)
..-..++-++++| |+++++...+. +++.+.+.+..+|++.|.++..
T Consensus 94 ~l~~ad~~ilVvD-~~~g~~~qt~~----~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 94 ALEAADAALVAVS-AEAGVQVGTER----AWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHCSEEEEEEE-TTTCSCHHHHH----HHHHHHHTTCCEEEEEECGGGC
T ss_pred HHhhcCcEEEEEc-CCcccchhHHH----HHHHHHHccCCEEEEecCCchh
Confidence 3445788899999 99999987653 3333334578899999988753
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00015 Score=76.12 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=41.3
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCC-cEEEEEec
Q 040300 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN-SYVIVVEH 274 (605)
Q Consensus 215 ~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g-~tvivvsH 274 (605)
.+.++.+.|+..+++..+.+|+++||.-..+..|... .....+++.+...+ .+|++++.
T Consensus 153 ~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 153 GQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp TCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 3467889999999999999999888874344455433 33456777776555 46666665
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00022 Score=74.89 Aligned_cols=60 Identities=10% Similarity=-0.055 Sum_probs=41.7
Q ss_pred CcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 040300 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 466 ~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsH 526 (605)
.+.++.++|+..+++..+.+|+++||.-..+..|... ....++++.+......++++++.
T Consensus 153 ~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 153 GQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp TCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 3467889999999999999999888775444455443 34456666654333357777776
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.58 E-value=2.3e-05 Score=72.83 Aligned_cols=28 Identities=39% Similarity=0.387 Sum_probs=25.2
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKP 129 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p 129 (605)
.|++++|+|+|||||||++++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999998643
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.57 E-value=2.4e-05 Score=72.71 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=24.3
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
|++++|+|+|||||||++++|++.+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999998754
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.55 E-value=3.3e-05 Score=73.94 Aligned_cols=40 Identities=28% Similarity=0.180 Sum_probs=24.8
Q ss_pred CCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 88 GPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 88 g~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+.+++.+++++ ...+|++++|+|++||||||+.+.|++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 9 SGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44567788777 46789999999999999999999999765
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=1.9e-05 Score=88.55 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=50.2
Q ss_pred CCceEEEEEeCCCC----CcccccchhhcccCccccCceEEEE-cCCCC---ceeeccccccccccccccCCcceEEEec
Q 040300 3 DRLTRIAIVSSDRC----KPKKCRQECKKSCPVVKTGKLCIEV-TPAAK---IAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 3 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~---~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
+....|-|.|.+.| .|..| ..|.++||. .|+++ +.+++ +-.|+.+.|+.||.|.-+||+.+|+...
T Consensus 499 ~~~~hl~~~d~~~~~~~~~~~~~-~~c~~~CPa-----~~~~~~~~~~~~~~~~~i~~~~Ci~C~~C~~~cp~~~i~~~~ 572 (584)
T 2gmh_A 499 DQPAHLTLKDDSVPVNRNLSIYD-GPEQRFCPA-----GVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVV 572 (584)
T ss_dssp SSCCSEEESSTTHHHHTHHHHHC-CTHHHHCTT-----CCEEEEECSSTTCEEEEECGGGCCCCCHHHHHCTTCCEEECC
T ss_pred CCCCeEEEcCcccchhhchhhhc-chhhhcCCh-----hhEEEeecCCCCceEEEEeCCCCcCCCCchhhCCCCCceeEC
Confidence 34567777777775 22444 579999997 47776 53345 7799999999999999999999997653
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=2.5e-05 Score=76.72 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=24.6
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcC
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl 397 (605)
..+|++++|.|+||||||||+++|+|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 355689999999999999999999998
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.53 E-value=3.3e-05 Score=74.51 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=24.2
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+|++++|+||||||||||++.|++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 347899999999999999999999865
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00023 Score=76.95 Aligned_cols=124 Identities=14% Similarity=0.171 Sum_probs=75.2
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.|++|+|||||+.-++.......| .++.|+.- .++..++.....
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g---------~~vl~~sl------E~~~~~l~~R~~---------- 249 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG---------VGVGIYSL------EMPAAQLTLRMM---------- 249 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC---------CCEEEEES------SSCHHHHHHHHH----------
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---------CeEEEEEC------CCCHHHHHHHHH----------
Confidence 44788899999999999999999888764321111 23555432 234444332100
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsH 526 (605)
.....+.+..+. -+.||..+.+|+.-|...+.+.++++.|+|. +++. ++...++++..+.+..+|||.+
T Consensus 250 -~~~~~i~~~~l~---~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~---~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 250 -CSEARIDMNRVR---LGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLM---EVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp -HHHTTCCTTTCC---GGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHH---HHHHHHHHHHHHSCCCEEEEEC
T ss_pred -HHHcCCCHHHHh---CCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHcCCCEEEEcC
Confidence 000111122221 2468999999988887777777888888764 4443 4455566665555777887743
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.51 E-value=1.5e-05 Score=87.59 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=30.9
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCC------------CCHHHHHHHH
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSY------------LDVKQRLKAA 256 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~------------LD~~~r~~~~ 256 (605)
.||||++|+..|+.|+..+|++ |||+.-- .|..+|..++
T Consensus 160 ~Ldg~~~~~~viviAatn~p~~--LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL 210 (499)
T 2dhr_A 160 EMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQIL 210 (499)
T ss_dssp HGGGCCSSCCCEEEECCSCGGG--SCTTTSSTTSSCCEEECCCCCHHHHHHHH
T ss_pred HhcccccCccEEEEEecCChhh--cCcccccccccceEEecCCCCHHHHHHHH
Confidence 5789999999999999999987 8988642 4666666544
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=4.1e-05 Score=71.40 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+|++++|+|+|||||||++++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 479999999999999999999999874
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=4.5e-05 Score=71.12 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=23.8
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+|++++|+|+|||||||++++|++.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 46899999999999999999999865
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.50 E-value=1.1e-05 Score=80.75 Aligned_cols=45 Identities=31% Similarity=0.426 Sum_probs=30.6
Q ss_pred eEEeCCCceeeecCC-CCCC---CcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 84 THRYGPNTFKLHRLP-VPRP---GQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 84 ~~~yg~~~f~l~~l~-~~~~---Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
+++|+.....|++++ .+.+ |++++|+|++||||||+.++|++.+.
T Consensus 25 ~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 25 HSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 556722223455555 4567 99999999999999999999998653
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=4.3e-05 Score=92.17 Aligned_cols=66 Identities=24% Similarity=0.538 Sum_probs=50.2
Q ss_pred eEEEEEeCCCCCcccccchhhcccCccccCceEEEEc---CC-------------------CC---ceeecccccccccc
Q 040300 6 TRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVT---PA-------------------AK---IAFISEELCIGCGI 60 (605)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~~-------------------~~---~~~i~~~~c~~~g~ 60 (605)
..+.++|.|+|- .|+ .|.+.||.. +|... ++ .+ ...|+++.|+|||.
T Consensus 678 ~~~p~~d~~kCi--~Cg-~Cv~vCP~~-----AI~~~~~~~~e~~~ap~g~~~~~~~~k~~~g~~~~~~v~~~~C~gCG~ 749 (1231)
T 2c42_A 678 INVPQWVPENCI--QCN-QCAFVCPHS-----AILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGN 749 (1231)
T ss_dssp SEEEEECTTTCC--CCC-HHHHHCSSC-----CEEEEEECGGGGTTCCTTCCCEECCSGGGTTCEEEEEECTTTCCCCCH
T ss_pred ccceEEeCccCC--chh-hHHHhCCcc-----cccccccchHHHhhCcccccccccccccccccccceeechhhCCChhH
Confidence 356789999995 795 799999974 44331 10 01 35689999999999
Q ss_pred ccccCCc--ceEEEecCCccc
Q 040300 61 CVKKCPF--EAIQIINLPKDL 79 (605)
Q Consensus 61 ~~~~cp~--~ai~i~nl~~~~ 79 (605)
||..||. +||++.......
T Consensus 750 Cv~vCP~~~~AI~~~~~~~~~ 770 (1231)
T 2c42_A 750 CADICPPKEKALVMQPLDTQR 770 (1231)
T ss_dssp HHHHCSSSSCSEEEEEGGGTH
T ss_pred HHhhCCCCccCeEEecchhhh
Confidence 9999999 999999876533
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.48 E-value=2.3e-05 Score=87.24 Aligned_cols=34 Identities=32% Similarity=0.536 Sum_probs=31.5
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCceee
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~ 135 (605)
+|++++|+||||+|||||+++|++.+.+..|.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~ 140 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence 7999999999999999999999999988877764
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.48 E-value=4.6e-05 Score=72.97 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=23.8
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+++++|++.+| ++++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~~~~~~~~-----~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAM-----VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CC-----CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCC-----CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 567889988777 689999999999999999999765
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=6.2e-05 Score=72.30 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=28.0
Q ss_pred CCCCCCcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 98 PVPRPGQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 98 ~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
+.+.+|++++|+|++||||||+++.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999999999863
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.45 E-value=2.3e-05 Score=87.13 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=30.0
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
+.+|++++|+|+||||||||+++|+|.+.|++|
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 456689999999999999999999999999876
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00041 Score=75.05 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=88.0
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCce-eeCCCChhhhhhhhccch-hhhhHHHHHHHHHHHhhcccccccch
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR-FNNPPDWQEILTYFRGSE-LQNYFTRILEDNLKAIIKPQYVDHIP 177 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~-i~~~~~~~~~~~~~~g~~-l~~~~~~~~~~~~~~~~~~q~~~~~~ 177 (605)
+.+|+++.|.|++|+|||||+.-++.......|. +. +|.... ......++.... ..+..+. +
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl----------~~slE~~~~~l~~R~~~~~--~~i~~~~---l- 260 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVG----------IYSLEMPAAQLTLRMMCSE--ARIDMNR---V- 260 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE----------EEESSSCHHHHHHHHHHHH--TTCCTTT---C-
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEE----------EEECCCCHHHHHHHHHHHH--cCCCHHH---H-
Confidence 4689999999999999999998887654322221 10 111110 001111111000 0000000 0
Q ss_pred hhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH------
Q 040300 178 KAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV--QNAEIYMFDEPSSYLDV------ 249 (605)
Q Consensus 178 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~--~~p~vlllDEPts~LD~------ 249 (605)
..+ .+. ..+..++...+..+.-..+.-.....+|..+.. +.++.+. .+++++++|..+.....
T Consensus 261 --~~g----~l~-~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~ 331 (444)
T 2q6t_A 261 --RLG----QLT-DRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVR--ARARRLVSQNQVGLIIIDYLQLMSGPGSGKSG 331 (444)
T ss_dssp --CGG----GCC-HHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHH--HHHHHHHHHSCCCEEEEECGGGCBCC------
T ss_pred --hCC----CCC-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEcChhhcCCCcCCCCC
Confidence 001 111 122233333333332222222234567777653 4455554 58999999998876543
Q ss_pred ----HHHHHHHHHHHHhhcC-CcEEEEEecC-------------Hh------HHHhhcCEEEEEeC
Q 040300 250 ----KQRLKAAQVVRSLLRP-NSYVIVVEHD-------------LS------VLDYLSDFICCLYG 291 (605)
Q Consensus 250 ----~~r~~~~~~i~~l~~~-g~tvivvsHd-------------l~------~l~~~~D~i~vl~g 291 (605)
.....+.+.|+.++++ +.+||+++|- +. .+.+.||.|+.|+.
T Consensus 332 ~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 332 ENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 1223555666777664 8999999982 11 24667899998863
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=6.9e-05 Score=85.35 Aligned_cols=44 Identities=14% Similarity=0.025 Sum_probs=31.9
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA 531 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~ 531 (605)
-..++-++++| |+.+++...+. +++.++ ..+.++|++.|.++..
T Consensus 96 ~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~----~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 96 EAADAALVAVS-AEAGVQVGTER-AWTVAE----RLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHCSEEEEEEE-TTTCSCHHHHH-HHHHHH----HTTCCEEEEEECGGGC
T ss_pred hhcCcEEEEEc-CCcccchhHHH-HHHHHH----HccCCEEEEecCCchh
Confidence 35678899999 99999987663 333332 2478899999987753
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00018 Score=70.76 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=32.3
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEec-CH
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH-AKKTAFVVEH-DF 528 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tiivvsH-D~ 528 (605)
..+|+++|+..+.+.++......+..+++.+-.. ...++|+++| |.
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 3578999999999899887776666665544221 1258888998 53
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.42 E-value=2.6e-05 Score=86.63 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=31.0
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCc
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG 132 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G 132 (605)
+.+|++++|+|+||||||||+++|+|.+.|+.|
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 468999999999999999999999999999886
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00016 Score=74.94 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=32.5
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeee
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i 405 (605)
+++|+..++ ++++|+|+||+||||++..|++.+.+..|++
T Consensus 97 ~l~~~~~~~-----~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kV 136 (320)
T 1zu4_A 97 RIDFKENRL-----NIFMLVGVNGTGKTTSLAKMANYYAELGYKV 136 (320)
T ss_dssp CCCCCTTSC-----EEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccccCCCC-----eEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 455554444 7899999999999999999999998776654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.38 E-value=5.5e-05 Score=78.43 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=23.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
++||+||||||||||+++|++++.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999873
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0001 Score=67.59 Aligned_cols=30 Identities=27% Similarity=0.593 Sum_probs=24.0
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHc
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~G 396 (605)
+..+++.+| +.+|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~g------~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG------INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE------EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC------eEEEECCCCCCHHHHHHHHHH
Confidence 444555454 799999999999999999874
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00018 Score=74.12 Aligned_cols=42 Identities=7% Similarity=0.244 Sum_probs=31.3
Q ss_pred cCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhcCCcEEEEEec
Q 040300 233 QNAEIYMFDEPSSYL-DVKQRLKAAQVVRSLLRPNSYVIVVEH 274 (605)
Q Consensus 233 ~~p~vlllDEPts~L-D~~~r~~~~~~i~~l~~~g~tvivvsH 274 (605)
.++++|++||+-.-- +......+..++..+...+..+|++++
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 469999999987633 336677788888887766777777665
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00098 Score=70.02 Aligned_cols=125 Identities=15% Similarity=0.283 Sum_probs=68.4
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.|++|+|||||...++...... ..++.|+.-+... + .. ...... .
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~----------g~~vlyid~E~s~--~-~~---~a~~~g--~------ 113 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----------GKTCAFIDAEHAL--D-PI---YARKLG--V------ 113 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----------TCCEEEEESSCCC--C-HH---HHHHTT--C------
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC----------CCeEEEEeCCCCc--c-HH---HHHHcC--C------
Confidence 457788999999999999999998887543211 1134555433211 1 11 111100 0
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCCH-H------------HHHHHHHHHHH-
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG--KPADIYLIDEPSAYLDS-E------------QRIVAAKVIKR- 512 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~--~~p~lllLDEPt~~LD~-~------------~~~~l~~~l~~- 512 (605)
.++.+.-..+. + ++ |-+.+++.++ .+++++++|++++-... + +.+.+.+.+++
T Consensus 114 -------~~~~l~i~~~~--~-~e-~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L 182 (356)
T 1u94_A 114 -------DIDNLLCSQPD--T-GE-QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 182 (356)
T ss_dssp -------CGGGCEEECCS--S-HH-HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHH
T ss_pred -------ChhheeeeCCC--C-HH-HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHH
Confidence 00111100111 2 22 3345556553 67999999999998741 1 11233444444
Q ss_pred --HHhcCCcEEEEEecCH
Q 040300 513 --FILHAKKTAFVVEHDF 528 (605)
Q Consensus 513 --l~~~~g~tiivvsHD~ 528 (605)
++++.+.+||+++|-.
T Consensus 183 ~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 183 AGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHHHHTCEEEEEEC--
T ss_pred HHHHHHhCCEEEEEeccc
Confidence 4566799999999853
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.34 E-value=6.6e-05 Score=77.80 Aligned_cols=30 Identities=30% Similarity=0.628 Sum_probs=26.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCCC--CCCcee
Q 040300 105 VLGLVGTNGIGKSTALKILAGKLK--PNLGRF 134 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l~--p~~G~i 134 (605)
++||+|+||||||||+++|++++. |+.|.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 999999999999999999999987 455553
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.32 E-value=1.5e-05 Score=79.77 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=33.2
Q ss_pred eeecCCceeeeeeEEEEEee---ceeecCeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVE---GEFTDSQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~---G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
++.|.+....+++++|++.+ | ++++|+|++||||||++++|++.+.
T Consensus 25 ~~~~~~~~~~l~~~~~~i~~~l~g-----~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 25 HSPFDEEQQILKKKAEEVKPYLNG-----RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -------CHHHHHHHHTTHHHHTT-----CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEecCcchhhhhhhhhhhhhcCC-----CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45562223467888888877 6 6899999999999999999998654
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=3.1e-05 Score=75.25 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=26.8
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCC---CCCCcee
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKL---KPNLGRF 134 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l---~p~~G~i 134 (605)
+.+++|+|++||||||++++|++.+ .++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i 39 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcce
Confidence 5689999999999999999999876 4555554
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00013 Score=70.03 Aligned_cols=29 Identities=31% Similarity=0.330 Sum_probs=25.3
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+.+|++++|+|++|||||||+++|++.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34457999999999999999999999864
|
| >3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A | Back alignment and structure |
|---|
Probab=97.30 E-value=8.9e-05 Score=60.66 Aligned_cols=26 Identities=35% Similarity=0.783 Sum_probs=23.3
Q ss_pred eeeccccccccccccccCCcceEEEe
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
++++++.|+|||.|++.||++||++.
T Consensus 1 ~~~~~~~C~~C~~C~~~CP~~ai~~~ 26 (82)
T 3eun_A 1 ALMITDECINCDVCEPECPNGAISQG 26 (82)
T ss_dssp CEEECTTCCCCCTTGGGCTTCCEEEC
T ss_pred CeEeCCCCcCccchHHHCChhheEcC
Confidence 46788899999999999999999874
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=4.6e-05 Score=74.02 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=26.7
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCC---CCCeeee
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLL---KPDSVED 405 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~---~p~~G~i 405 (605)
+.+++|+||+||||||++++|++.+ .++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i 39 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcce
Confidence 3589999999999999999999866 5566654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.22 E-value=2.5e-05 Score=80.30 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHhhcC-Cc--EEEEEecCHhHHHhhcCEE
Q 040300 217 LSGGELQRFAIAVVAV--QNAEIYMFDEPSSYLDVKQ-RLKAAQVVRSLLRP-NS--YVIVVEHDLSVLDYLSDFI 286 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~--~~p~vlllDEPts~LD~~~-r~~~~~~i~~l~~~-g~--tvivvsHdl~~l~~~~D~i 286 (605)
+|+|++ .+++.+. ..|.++++ |.+|... +..+.+.+.++.+. +. .+.+++|+-.-++.+.|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 898886 4566665 78999999 7899866 66677788877653 43 5555667766666665554
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00044 Score=70.68 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++..+.|.||+|+|||||+++|++.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 578899999999999999999999875
|
| >2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00013 Score=59.66 Aligned_cols=26 Identities=31% Similarity=0.692 Sum_probs=22.9
Q ss_pred eeeccccccccccccccCCcceEEEe
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
++|+.+.|+|||.|++.||++||.+.
T Consensus 1 ~~~~~~~C~~C~~C~~~CP~~ai~~~ 26 (82)
T 2fgo_A 1 SLKITDDCINCDVCEPECPNGAISQG 26 (82)
T ss_dssp CBCCCTTCCCCCTTGGGCTTCCEEEC
T ss_pred CceeCCCCCChhhHHHHCChhccCCC
Confidence 35778899999999999999999864
|
| >2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00011 Score=60.54 Aligned_cols=26 Identities=38% Similarity=0.882 Sum_probs=22.8
Q ss_pred eeeccccccccccccccCCcceEEEe
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
++|+++.|+|||.|++.||++||.+.
T Consensus 1 ~~~~~~~C~~C~~C~~~CP~~ai~~~ 26 (85)
T 2zvs_A 1 ALLITKKCINCDMCEPECPNEAISMG 26 (85)
T ss_dssp CEEECTTCCCCCTTTTTCTTCCEECC
T ss_pred CEEeCCcCcChhHHHHHCchhccCcC
Confidence 35777899999999999999999864
|
| >1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0001 Score=59.84 Aligned_cols=26 Identities=38% Similarity=0.768 Sum_probs=22.8
Q ss_pred eeeccccccccccccccCCcceEEEe
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
++++++.|+|||.|++.||++||.+.
T Consensus 1 ~~~~~~~C~~C~~C~~~CP~~ai~~~ 26 (80)
T 1rgv_A 1 ALYINDDCTACDACVEECPNEAITPG 26 (80)
T ss_dssp CBCCCSCCCCCCTTTTTCTTCCEECC
T ss_pred CeEeCCCCcChhhHHHHcChhccCcC
Confidence 46778899999999999999999864
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0013 Score=70.53 Aligned_cols=33 Identities=33% Similarity=0.220 Sum_probs=30.5
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
+|++++++|+||+||||++..|++.+.+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~V 129 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP 129 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 799999999999999999999999998876665
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=9.7e-05 Score=69.20 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=26.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKP 129 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p 129 (605)
.+|++++|+|++||||||+++.|++.+.|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47999999999999999999999998755
|
| >1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0002 Score=72.46 Aligned_cols=58 Identities=16% Similarity=0.357 Sum_probs=46.3
Q ss_pred EEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeecccccccc----------c---cccccCCcceEEEe
Q 040300 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGC----------G---ICVKKCPFEAIQII 73 (605)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~----------g---~~~~~cp~~ai~i~ 73 (605)
.+.++|.++|. .| ..|.+.||.. +|.+.+.. +..+.|++| | .||+.||.+||++.
T Consensus 90 g~v~id~~~Ci--gC-~~C~~~CP~~-----Ai~~~~~~----~~~~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~ 157 (274)
T 1ti6_B 90 GIVLIDPEKAK--GK-KELLDTCPYG-----VMYWNEEE----NVAQKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFL 157 (274)
T ss_dssp SCEEECTTTTT--TC-GGGGGGCSSC-----CCEEETTT----TEEECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEE
T ss_pred CcEEechhhcc--ch-HHHHhhCccC-----CeEEEccc----CccccCCCchhhhhhhccCCCCcchhhhCCcCceEEc
Confidence 35789999995 68 5799999973 55665543 245689999 9 99999999999998
Q ss_pred cCC
Q 040300 74 NLP 76 (605)
Q Consensus 74 nl~ 76 (605)
++.
T Consensus 158 ~~~ 160 (274)
T 1ti6_B 158 KTT 160 (274)
T ss_dssp EEC
T ss_pred CCC
Confidence 765
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0017 Score=66.81 Aligned_cols=158 Identities=10% Similarity=0.038 Sum_probs=79.9
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcC--CCCCeeeee-ccccC---cceeEeecCcCCCCCcCcHHHHHHhhhccCC
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDSVEDS-DVEIP---EFNVSYKPQKISPKFQSTVRHLLHQKIRDSY 442 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl--~~p~~G~i~-~~~~~---~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~ 442 (605)
|-+.+|+++.|.|++|+|||||+..++.. +.+..+-.. +.... ..++.|+.-+.. + ....+.........
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~--~--~~~~l~~~~~~~g~ 168 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT--F--RPERIMQMAEHAGI 168 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC--C--CHHHHHHHHHHHTC
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC--C--CHHHHHHHHHHcCC
Confidence 55778899999999999999999888753 221000000 00000 134566653321 1 12222111000011
Q ss_pred CCHHHHHHHHhhcCCchhhccCcCcCChhHH--HHHHHHHHHc---cCCCEEEEecCCCCCC--------HHH----HHH
Q 040300 443 THPQFVSDVMKPLLIEQLMDQEVVNLSGGEL--QRVALCLCLG---KPADIYLIDEPSAYLD--------SEQ----RIV 505 (605)
Q Consensus 443 ~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~--QRvaiA~aL~---~~p~lllLDEPt~~LD--------~~~----~~~ 505 (605)
+. .++++.+-+ ..-..++. +-+..++.++ .+++++++|.-++-.. ... ...
T Consensus 169 -~~---~~~~~~l~~--------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~ 236 (322)
T 2i1q_A 169 -DG---QTVLDNTFV--------ARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGR 236 (322)
T ss_dssp -CH---HHHHHTEEE--------EECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHH
T ss_pred -CH---HHHhcCEEE--------EeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHH
Confidence 11 122222111 11112232 2233344444 4689999999886542 222 245
Q ss_pred HHHHHHHHHhcCCcEEEEEecC---HH-------------HHHhhcCEEEEEe
Q 040300 506 AAKVIKRFILHAKKTAFVVEHD---FI-------------MATYLADRVIVYE 542 (605)
Q Consensus 506 l~~~l~~l~~~~g~tiivvsHD---~~-------------~~~~~adrviv~~ 542 (605)
++..|++++++.+.+||++.|- .. .+...+|.++.++
T Consensus 237 ~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~ 289 (322)
T 2i1q_A 237 HMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVR 289 (322)
T ss_dssp HHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEE
Confidence 5566667777789999998872 11 2455677777665
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0027 Score=66.60 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=23.4
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+|+++.|.|++|+|||||+..++..
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999888754
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00027 Score=67.35 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.6
Q ss_pred cEEEEECCCCChHHHHHHHHhcCCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
..+.|.|++|+|||||++.|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999987653
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00015 Score=76.11 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=29.9
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
++.+++|+|++|||||||++.|+|.+.|..|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v 105 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 588999999999999999999999888877765
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0036 Score=72.24 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.5
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++-.-+.|.||.|+|||||+|.+++.+
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 344568999999999999999999875
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0076 Score=63.71 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=41.2
Q ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhcCCcEEEEEecCHhHHH
Q 040300 233 QNAEIYMFDEPSSYLD---VKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLD 280 (605)
Q Consensus 233 ~~p~vlllDEPts~LD---~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~ 280 (605)
..|.++++||--..++ +.....+.+++++.++.|..++++||+++.+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 3588999999999995 66777788899998888999999999998664
|
| >1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00017 Score=55.73 Aligned_cols=26 Identities=27% Similarity=0.692 Sum_probs=22.8
Q ss_pred ceeeccccccccccccccCCcceEEEe
Q 040300 47 IAFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 47 ~~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
+..|+++.|+|||.|++.|| ++|.+.
T Consensus 3 ~~~id~~~C~~Cg~C~~~CP-~~~~~~ 28 (64)
T 1dax_A 3 KFYVDQDECIACESCVEIAP-GAFAMD 28 (64)
T ss_dssp CCEECSTTCCSCCHHHHHCT-TTEEEC
T ss_pred EEEEccccCCCchHHHHhCC-ccEeEc
Confidence 45788889999999999999 998764
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00039 Score=67.00 Aligned_cols=29 Identities=28% Similarity=0.651 Sum_probs=23.3
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA 395 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~ 395 (605)
+..+++.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~------~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG------INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE------EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC------eEEEEcCCCCCHHHHHHHHH
Confidence 445555555 79999999999999999875
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00036 Score=65.27 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=25.3
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
+|++++|+|++||||||++++|++.+++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5689999999999999999999997754
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0003 Score=74.48 Aligned_cols=128 Identities=10% Similarity=0.112 Sum_probs=73.2
Q ss_pred eeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccC----cceeEeecCcCCCCCc-CcHHHH
Q 040300 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIP----EFNVSYKPQKISPKFQ-STVRHL 433 (605)
Q Consensus 359 l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~----~~~i~y~~q~~~~~~~-~tv~~~ 433 (605)
++++++.+..| ++++|+||||||||||+++|+|.. .|.+.....+ ...+++++|.....++ .+....
T Consensus 159 l~~~~~~i~~~-----~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 159 LKCMVYNIPKK-----RYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHHHHHCCTTC-----CEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTT
T ss_pred HHhcccccCCC-----CEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 45566666666 689999999999999999999864 4554321111 1135666665311000 000000
Q ss_pred HHhhhccCCCCH----HHHHHHHh---------------hcCC-chhhccCcCcCChhHHHHHHHHHHHccCCCEEE-Ee
Q 040300 434 LHQKIRDSYTHP----QFVSDVMK---------------PLLI-EQLMDQEVVNLSGGELQRVALCLCLGKPADIYL-ID 492 (605)
Q Consensus 434 ~~~~~~~~~~~~----~~~~~~l~---------------~l~l-~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll-LD 492 (605)
+...... ... ....+.+. ..-+ ...++.....+++|++||++.+.++...|++++ ||
T Consensus 231 ~~r~l~~--~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd 308 (377)
T 1svm_A 231 ESRDLPS--GQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLE 308 (377)
T ss_dssp TTTTCCC--CSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred HHhhccc--cCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEe
Confidence 0000000 000 11112221 1111 123466778899999999999888899999988 99
Q ss_pred cCCC
Q 040300 493 EPSA 496 (605)
Q Consensus 493 EPt~ 496 (605)
+|+.
T Consensus 309 ~~~~ 312 (377)
T 1svm_A 309 RSEF 312 (377)
T ss_dssp TCTH
T ss_pred CCHH
Confidence 9997
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00033 Score=66.80 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEecCCCCHHHHHHHHHc
Q 040300 376 IIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~G 396 (605)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00085 Score=63.83 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.+.|.||+|+|||||++.|+....
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999997653
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00035 Score=74.03 Aligned_cols=50 Identities=6% Similarity=0.070 Sum_probs=40.0
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEE-EeCCCCCCCHHHHHHHHHHHHHhhcCCcEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYM-FDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll-lDEPts~LD~~~r~~~~~~i~~l~~~g~tv 269 (605)
.+++....+++|++||++.+.+++..|++++ ||+|+. .+++++.+.|.++
T Consensus 275 ~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~-----------~l~~RL~~Rg~t~ 325 (377)
T 1svm_A 275 IVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF-----------LLEKRIIQSGIAL 325 (377)
T ss_dssp EEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH-----------HHHTTCTTCHHHH
T ss_pred ccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH-----------HHHHHHHHcCccH
Confidence 4677888999999999999888899999988 999997 2456666655543
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0015 Score=62.51 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=32.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l 279 (605)
.++.++++||.-. ||......+.+.+.+. ..+..+|+++++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHhC
Confidence 4678999999755 7887777666666543 2367788888876543
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0012 Score=71.44 Aligned_cols=125 Identities=7% Similarity=0.099 Sum_probs=72.5
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.|+.|+|||||+--++...-- ...++.|+.-+ ++..++......
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~----------~g~~vl~fSlE------ms~~ql~~R~~~--------- 246 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----------NDDVVNLHSLE------MGKKENIKRLIV--------- 246 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH----------TTCEEEEECSS------SCTTHHHHHHHH---------
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH----------cCCEEEEEECC------CCHHHHHHHHHH---------
Confidence 34788899999999999999998777643210 12246665433 232232211000
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcE--EEEEec
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKT--AFVVEH 526 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t--iivvsH 526 (605)
....+.+..+... -..|+..+.+|+.-|...+.+.++++.|+|. +++. .+...++++.++.+.. +|||.+
T Consensus 247 --~~~~i~~~~l~~g-~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~---~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 247 --TAGSINAQKIKAA-RRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVN---YIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp --HHSCCCHHHHHHT-GGGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHH---HHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred --HHcCCCHHHHhcc-cCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHhCCCCeEEEEec
Confidence 0000111112110 0238888888888877777777888888874 5554 4455566665555667 888754
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0005 Score=66.57 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+..+.|.||+|+|||||++.++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0002 Score=75.11 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=27.2
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeee
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i 405 (605)
+.+++|+|++|||||||++.|+|.+.++.|++
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v 105 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 35899999999999999999999877665543
|
| >3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00027 Score=81.98 Aligned_cols=94 Identities=18% Similarity=0.301 Sum_probs=58.7
Q ss_pred EEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccc----cccccccccccCCcceEEEecCCcc---cCCC
Q 040300 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEE----LCIGCGICVKKCPFEAIQIINLPKD---LDKD 82 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~----~c~~~g~~~~~cp~~ai~i~nl~~~---~~~~ 82 (605)
++|.+||- .| ..|.++||-+- |...|.+........|... .|++||.|+..||.+||+....... .+-.
T Consensus 175 ~~d~~~CI--~C-~~Cv~~C~~~~-~~~~i~~~~~g~~~~i~~~~~~~~C~~CG~Cv~vCP~gAl~~~~~~~~~r~w~~~ 250 (783)
T 3i9v_3 175 ILDRERCI--HC-KRCVRYFEEVP-GDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDLTARFRARNWEME 250 (783)
T ss_dssp EECTTTCC--CC-CHHHHHHHHTT-CCCCCEECSCTTSCCEECSSTTCCSTTTTTHHHHCSSSSEEEGGGTTSCCTTTSE
T ss_pred EEchhhCC--Cc-cHHHHHhhhhc-CCceeeeecCCCccEEccCCCCCCCccchhHHhhcccCceeccccccccccccce
Confidence 56999996 68 78999997642 2335555444334444432 6999999999999999998765321 1111
Q ss_pred ceEEeCC-----CceeeecCCCCCCCcEEEEECC
Q 040300 83 TTHRYGP-----NTFKLHRLPVPRPGQVLGLVGT 111 (605)
Q Consensus 83 ~~~~yg~-----~~f~l~~l~~~~~Ge~~gLvG~ 111 (605)
.+...-. .++.++ .+.|+++-+.|.
T Consensus 251 ~~~s~C~~C~~gC~i~v~----v~~g~v~rv~~~ 280 (783)
T 3i9v_3 251 ETPTTCALCPVGCGITAD----TRSGELLRIRAR 280 (783)
T ss_dssp EEEEECCSSSSCCEEEEE----EETBEEEEEEEC
T ss_pred EEEEeCCCCCCcccceee----eECCEEEeccCC
Confidence 1222111 123332 367999999985
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00045 Score=71.10 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=30.5
Q ss_pred cCCCEEEEecCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 040300 484 KPADIYLIDEPSAY-LDSEQRIVAAKVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 484 ~~p~lllLDEPt~~-LD~~~~~~l~~~l~~l~~~~g~tiivvsH 526 (605)
.++++|++||+-.- .+...+..+..++..+.. .+..+|++++
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 46899999998663 344677888888888754 4666666665
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00063 Score=69.13 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=27.4
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCce
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR 133 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~ 133 (605)
++...+.|.||+|+||||+++.|++.+.+..+.
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 345689999999999999999999987665443
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00052 Score=62.83 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred CcEEEEECCCCChHHHHHHHHhc
Q 040300 103 GQVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G 125 (605)
..+.+|+|||||||||++.+|.-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34999999999999999999873
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0023 Score=65.28 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
..+.|.||+|+|||||+++|++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh
Confidence 468999999999999999999865
|
| >2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00036 Score=72.98 Aligned_cols=59 Identities=31% Similarity=0.645 Sum_probs=47.0
Q ss_pred EEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc---------cccccCCcceEEEecCCc
Q 040300 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG---------ICVKKCPFEAIQIINLPK 77 (605)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g---------~~~~~cp~~ai~i~nl~~ 77 (605)
.+.++|.++|. .| ..|...||. .+|.+.+.. +..+.|++|+ .||+.||.+||.+.++..
T Consensus 175 g~v~id~~kCi--gC-g~Cv~aCP~-----~Ai~~~~~~----~~~~kC~~C~~r~~~g~~paCv~~CP~~Ai~~g~~~d 242 (352)
T 2ivf_B 175 GIVLVDQERCK--GH-RHCVEACPY-----KAIYFNPVS----QTSEKCILCYPRIEKGIANACNRQCPGRVRAFGYLDD 242 (352)
T ss_dssp CCEEECTTTCC--CC-CHHHHHCTT-----CCEEEETTT----TEEEECCTTHHHHTTTBCCHHHHTCTTCCEEEEETTC
T ss_pred CeEEechhhcC--Cc-hHHHhhcCc-----cceeccccc----ccccccCCCcchhhcCCCChHHHhcCccceeccccch
Confidence 45788999995 58 579999997 367776542 3456899996 999999999999988754
|
| >1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00023 Score=57.36 Aligned_cols=28 Identities=29% Similarity=0.833 Sum_probs=24.7
Q ss_pred ceeeccccccccccccccCCcceEEEec
Q 040300 47 IAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 47 ~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
+++++.+.|+|||.|++.||++||++.+
T Consensus 2 ~~~~~~~~C~~Cg~C~~~CP~~a~~~~~ 29 (80)
T 1jb0_C 2 HTVKIYDTCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_dssp CEEEEETTCCCCCHHHHHCTTCCCEEEE
T ss_pred CCcccCCcCcChhHHHHHCCcccccccc
Confidence 4678888999999999999999998764
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0003 Score=69.12 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=28.7
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHH
Q 040300 468 LSGGELQRVALCLCLGKPADIYLIDEPSA-YLDSEQRIVAAKVIKR 512 (605)
Q Consensus 468 LSGGe~QRvaiA~aL~~~p~lllLDEPt~-~LD~~~~~~l~~~l~~ 512 (605)
.+.|...+... ....+-+++++||.-. ++|.......++.+..
T Consensus 161 ~Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 161 CTVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp EEHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 45677766643 3578899999999976 5887666444444433
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00039 Score=66.31 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00026 Score=69.02 Aligned_cols=60 Identities=18% Similarity=0.399 Sum_probs=46.3
Q ss_pred EEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeecccccccc------c---cccccCCcceEEEecCC
Q 040300 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGC------G---ICVKKCPFEAIQIINLP 76 (605)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~------g---~~~~~cp~~ai~i~nl~ 76 (605)
.+.++|.++|....| ..|...||.. .|.+++... ..+.|++| | .||+.||.+||++.++.
T Consensus 99 g~v~id~~~C~~~~C-~~C~~~CP~~-----Ai~~~~~~~----~~~kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~~~~~ 167 (214)
T 1h0h_B 99 GCVLFTPKTKDLEDY-ESVISACPYD-----VPRKVAESN----QMAKCDMCIDRITNGLRPACVTSCPTGAMNFGDLS 167 (214)
T ss_dssp CCEEECGGGGGCSCH-HHHHHHCTTC-----CCEECTTSS----CEECCCTTHHHHTTTCCCHHHHHCSSSCEEEEEHH
T ss_pred CeEEEeHHHCccccc-cHHHHhcCCC-----CeEecCCCc----ccCcCCCCcchhhcCCChhHHHhcCcccEEEccHH
Confidence 457899999964358 5799999974 455654322 45689999 6 99999999999998754
|
| >3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00041 Score=74.33 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=35.8
Q ss_pred chhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceE
Q 040300 23 QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAI 70 (605)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai 70 (605)
.+|+..||.. ||..+ +++..|+++.|+.||-|+++||+.|.
T Consensus 278 ~~vv~~CPt~-----ai~~~--~~~l~Id~~~C~~Cg~Ci~~CP~al~ 318 (437)
T 3or1_A 278 AEVVGLCPTG-----CMTYE--SGTLSIDNKNCTRCMHCINTMPRALK 318 (437)
T ss_dssp HHTTTTCTTC-----CEEEE--TTEEEECGGGCCCCSHHHHHCTTTEE
T ss_pred hhhhccCcHH-----heeec--CCEEEEccccCCchhhhHhhCcHhhc
Confidence 6899999964 88886 47899999999999999999999554
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00071 Score=65.45 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=28.6
Q ss_pred cCCCEEEEecCCCCC-CHHHHHHHHHHHHHHHhcCCcE-EEEEec
Q 040300 484 KPADIYLIDEPSAYL-DSEQRIVAAKVIKRFILHAKKT-AFVVEH 526 (605)
Q Consensus 484 ~~p~lllLDEPt~~L-D~~~~~~l~~~l~~l~~~~g~t-iivvsH 526 (605)
.++.++++||.-.-- +...+..+..++..+... +.. +|++++
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~~~~ 146 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ-KRGSLIVSAS 146 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH-CSCEEEEEES
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCCeEEEEcC
Confidence 468999999965432 233367788888887544 444 777776
|
| >1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0003 Score=57.23 Aligned_cols=25 Identities=28% Similarity=0.776 Sum_probs=22.0
Q ss_pred ceeeccccccccccccccCCcceEEE
Q 040300 47 IAFISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 47 ~~~i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
+..|+++.|+|||.|++.|| +++.+
T Consensus 3 ~v~vd~~~CigCg~C~~~CP-~~~~~ 27 (81)
T 1iqz_A 3 YTIVDKETCIACGACGAAAP-DIYDY 27 (81)
T ss_dssp EEEECTTTCCCCSHHHHHCT-TTEEE
T ss_pred EEEEecccCcccChhhHhCc-hheee
Confidence 46788899999999999999 88765
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0022 Score=64.36 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=23.9
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++.-+.|.||.|+|||||++.|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456779999999999999999998865
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00065 Score=63.02 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
++|..++|+|++|+|||||++.|+|...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3688999999999999999999999753
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0078 Score=61.47 Aligned_cols=33 Identities=33% Similarity=0.236 Sum_probs=29.3
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
+|++++++|+||+||||++..|++.+.+..+++
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v 129 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV 129 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 399999999999999999999999987765554
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.01 Score=62.37 Aligned_cols=137 Identities=14% Similarity=0.196 Sum_probs=77.3
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.|+.|+|||||+..++-..... ...+.|+.-+... . +...
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~----------g~~vlyi~~E~s~--~----~~~a------------- 119 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKA----------GGTCAFIDAEHAL--D----PVYA------------- 119 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT----------TCCEEEEESSCCC--C----HHHH-------------
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC----------CCeEEEEECCCCh--h----HHHH-------------
Confidence 467888999999999999999997776432111 1235565533211 1 1111
Q ss_pred HHHHhhcCC--chhhccCcCcCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCC---H----------HHHHHHHHHHH
Q 040300 449 SDVMKPLLI--EQLMDQEVVNLSGGELQRVALCLCLG--KPADIYLIDEPSAYLD---S----------EQRIVAAKVIK 511 (605)
Q Consensus 449 ~~~l~~l~l--~~~~~~~~~~LSGGe~QRvaiA~aL~--~~p~lllLDEPt~~LD---~----------~~~~~l~~~l~ 511 (605)
+.+++ +.+.-..+. + ++ |-+.+++.+. .+++++++|..++-.- . .+.+.+.+.++
T Consensus 120 ----~~~g~d~~~l~i~~~~--~-~e-~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr 191 (366)
T 1xp8_A 120 ----RALGVNTDELLVSQPD--N-GE-QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALR 191 (366)
T ss_dssp ----HHTTCCGGGCEEECCS--S-HH-HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHH
T ss_pred ----HHcCCCHHHceeecCC--c-HH-HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHH
Confidence 11111 111111111 2 23 3345566664 4689999999997651 1 12234555555
Q ss_pred HH---HhcCCcEEEEEecCHHH----------------HHhhcCEEEEEe
Q 040300 512 RF---ILHAKKTAFVVEHDFIM----------------ATYLADRVIVYE 542 (605)
Q Consensus 512 ~l---~~~~g~tiivvsHD~~~----------------~~~~adrviv~~ 542 (605)
+| +++.+.+||+++|-... +..+||-++.+.
T Consensus 192 ~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~ 241 (366)
T 1xp8_A 192 KLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVR 241 (366)
T ss_dssp HHHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEE
Confidence 54 56789999999885321 355678777775
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0019 Score=65.54 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=24.5
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
.+.|.||+|+||||++++|++.+.+..+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 5899999999999999999998766544
|
| >1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00046 Score=70.61 Aligned_cols=57 Identities=28% Similarity=0.516 Sum_probs=44.3
Q ss_pred EEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc---------cccccCCcceEEEecCC
Q 040300 8 IAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG---------ICVKKCPFEAIQIINLP 76 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g---------~~~~~cp~~ai~i~nl~ 76 (605)
+.++|.++|. .| ..|...||.+ .|.+++..++ ...|++|| .||+.||++||.+.+..
T Consensus 125 ~v~id~~~Ci--gC-g~C~~~CP~~-----ai~~~~~~~~----~~kC~~C~~r~~~g~~p~Cv~~CP~~Ai~~~~~~ 190 (294)
T 1kqf_B 125 IVDFQSENCI--GC-GYCIAGCPFN-----IPRLNKEDNR----VYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTKK 190 (294)
T ss_dssp CEEECGGGCC--CC-CHHHHHCTTC-----CCEEETTTTE----EECCCTTHHHHTTTCCCHHHHHCTTSCEEEEEHH
T ss_pred ceEeCcccCC--Cc-chhhhcCCCC-----CcEecCCCCC----eeeCCCccchhhcCccHHHHHhCCcCcEEEecHH
Confidence 4678999995 68 5799999974 4556554333 24799998 99999999999998754
|
| >2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0007 Score=64.99 Aligned_cols=56 Identities=27% Similarity=0.637 Sum_probs=45.0
Q ss_pred EEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc---------cccccCCcceEEEecCC
Q 040300 8 IAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG---------ICVKKCPFEAIQIINLP 76 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g---------~~~~~cp~~ai~i~nl~ 76 (605)
+.++|.++|. .| ..|...||.. +|.+++..+ .+.|++|| .||..||.+||++.++.
T Consensus 82 ~~~id~~~Ci--gC-~~C~~~CP~~-----Ai~~~~~~~-----~~kC~~C~~~~~~g~~p~Cv~~CP~~Ai~~g~~~ 146 (195)
T 2vpz_B 82 LVLVDPKKCI--AC-GACIAACPYD-----ARYLHPAGY-----VSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLE 146 (195)
T ss_dssp CEEECTTTCC--CC-CHHHHHCTTC-----CCEECTTSS-----EECCCTTHHHHHTTCCCHHHHSCTTCCEEEEETT
T ss_pred ceeecCCCCC--Cc-ChhHhhCCCC-----CeEECCCCC-----CccCcCcchHHhCCCCchhHhhCCcccEEEeccc
Confidence 5678999996 58 5799999963 566766433 56899999 79999999999997665
|
| >1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00049 Score=55.54 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=24.0
Q ss_pred eeeccccccc--cccccccCCcceEEEec
Q 040300 48 AFISEELCIG--CGICVKKCPFEAIQIIN 74 (605)
Q Consensus 48 ~~i~~~~c~~--~g~~~~~cp~~ai~i~n 74 (605)
|+|+.+.|+| ||.|++.||++||.+.+
T Consensus 1 p~i~~~~C~~c~C~~C~~~CP~~ai~~~~ 29 (78)
T 1h98_A 1 PHVICEPCIGVKDQSCVEVCPVECIYDGG 29 (78)
T ss_dssp CEEECGGGTTTCCCHHHHHCTTCCEEECS
T ss_pred CEEEchhCCCCCcChhhhhcCccceEcCC
Confidence 5788899999 99999999999998753
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0047 Score=63.55 Aligned_cols=125 Identities=10% Similarity=0.227 Sum_probs=71.6
Q ss_pred ceeecCeEEEEEecCCCCHHHHH-HHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQF 447 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLl-k~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~ 447 (605)
|-+.+| ++-|.||.|+|||||+ .+++...+.. ....+.|+.-+.... ..
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g---------~g~~vlyId~E~s~~---~~----------------- 73 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQY---------PDAVCLFYDSEFGIT---PA----------------- 73 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHC---------TTCEEEEEESSCCCC---HH-----------------
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcC---------CCceEEEEeccchhh---HH-----------------
Confidence 557778 8999999999999995 4444433210 012355654322111 01
Q ss_pred HHHHHhhcCCc--hhhccCcCcCChhHHHHHHHHHHH--c--cCCCEEEEecCCCCCC---------------HHHHHHH
Q 040300 448 VSDVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCL--G--KPADIYLIDEPSAYLD---------------SEQRIVA 506 (605)
Q Consensus 448 ~~~~l~~l~l~--~~~~~~~~~LSGGe~QRvaiA~aL--~--~~p~lllLDEPt~~LD---------------~~~~~~l 506 (605)
.++.+|+. +++-..+ .-+|++.+.++..| + .+|+++++|--++-.- +.+.+.+
T Consensus 74 ---ra~~lGvd~d~llv~~~---~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~ 147 (333)
T 3io5_A 74 ---YLRSMGVDPERVIHTPV---QSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTM 147 (333)
T ss_dssp ---HHHHTTCCGGGEEEEEC---SBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHH
T ss_pred ---HHHHhCCCHHHeEEEcC---CCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHH
Confidence 12223332 2211112 23566667777776 3 3699999998877641 0233445
Q ss_pred HHHHHH---HHhcCCcEEEEEecCHH
Q 040300 507 AKVIKR---FILHAKKTAFVVEHDFI 529 (605)
Q Consensus 507 ~~~l~~---l~~~~g~tiivvsHD~~ 529 (605)
.+.|++ ++++.+.++|+|-|=..
T Consensus 148 s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 148 KSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHHhCCEEEEECCeee
Confidence 555554 46778999999999755
|
| >1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00047 Score=58.60 Aligned_cols=29 Identities=31% Similarity=0.708 Sum_probs=25.7
Q ss_pred CceeeccccccccccccccCCcceEEEec
Q 040300 46 KIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 46 ~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
.+..|+++.|+|||.|++.||++||.+.+
T Consensus 36 ~~~~id~~~C~~Cg~C~~~CP~~ai~~~~ 64 (103)
T 1xer_A 36 TIVGVDFDLCIADGSCINACPVNVFQWYD 64 (103)
T ss_dssp SSEEEETTTCCCCCHHHHHCTTCCCEEEE
T ss_pred ceEEEehhhCCChhhHHHHcCccCeeccc
Confidence 45788999999999999999999998764
|
| >2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00063 Score=50.82 Aligned_cols=24 Identities=46% Similarity=0.988 Sum_probs=20.8
Q ss_pred eeccccccccccccccCCcceEEEe
Q 040300 49 FISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 49 ~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
+| ++.|++||.|++.||++||++.
T Consensus 3 ~i-~~~C~~C~~C~~~CP~~ai~~~ 26 (55)
T 2fdn_A 3 VI-NEACISCGACEPECPVNAISSG 26 (55)
T ss_dssp EE-CTTCCCCCTTGGGCTTCCEECC
T ss_pred Ee-cccCcChhhHHHHCCccccCcC
Confidence 35 6789999999999999999754
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00027 Score=68.12 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=28.7
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG 132 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G 132 (605)
.+|.++.|+|++||||||+++.|++.+.|..|
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 57999999999999999999999998865555
|
| >1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00066 Score=54.54 Aligned_cols=26 Identities=38% Similarity=0.800 Sum_probs=23.1
Q ss_pred eeeccccccc--cccccccCCcceEEEe
Q 040300 48 AFISEELCIG--CGICVKKCPFEAIQII 73 (605)
Q Consensus 48 ~~i~~~~c~~--~g~~~~~cp~~ai~i~ 73 (605)
|+|+++.|+| ||.|++.||++||.+.
T Consensus 1 a~i~~~~C~~c~C~~C~~~Cp~~ai~~~ 28 (77)
T 1bc6_A 1 AYVITEPCIGTKDASCVEVCPVDCIHEG 28 (77)
T ss_dssp CEECCSTTTTCCCCSSTTTCTTCCEEEC
T ss_pred CEEeCccCCCCCcchhHHhcccccEEeC
Confidence 4678889999 9999999999999874
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00049 Score=64.77 Aligned_cols=33 Identities=36% Similarity=0.354 Sum_probs=28.3
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCce
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR 133 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~ 133 (605)
.+|.++.|+|.+||||||+++.|+..+.+..+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~ 43 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYR 43 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 579999999999999999999999987654333
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0017 Score=65.18 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
-+.|.||.|+|||||++.|+..+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999999998765
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0012 Score=61.27 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.5
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+|..++|+|++|+|||||++.|+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 457899999999999999999998653
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00031 Score=67.79 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=26.4
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
|.+++|+|++||||||+.+.|++.+.|..|
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 468999999999999999999998876555
|
| >1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0008 Score=50.58 Aligned_cols=24 Identities=46% Similarity=1.056 Sum_probs=20.9
Q ss_pred eeeccccccccccccccCCcceEEE
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
..|+++.|+|||.|++.|| .+|.+
T Consensus 2 i~i~~~~C~~C~~C~~~Cp-~~~~~ 25 (59)
T 1dwl_A 2 IVIDHEECIGCESCVELCP-EVFAM 25 (59)
T ss_dssp EEESSCCCSSCCGGGGTST-TTEEE
T ss_pred eEEChhhCcChhHHHHHCC-HHhee
Confidence 5678889999999999999 58775
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00045 Score=64.97 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=26.2
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
+|.+++|+|++||||||+++.|+..+.+..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~ 42 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGY 42 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 3578999999999999999999988765433
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0008 Score=64.44 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=25.6
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
.+|.+++|+|++||||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 5799999999999999999999998763
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00079 Score=64.48 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.6
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.+|.+++|+||+|||||||.+.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4567899999999999999999998764
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00045 Score=72.09 Aligned_cols=35 Identities=31% Similarity=0.250 Sum_probs=30.8
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
..+|.+++|+|+||+|||||++.|+|.+.+..|++
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v 87 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 46899999999999999999999999887766554
|
| >1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00077 Score=73.60 Aligned_cols=56 Identities=23% Similarity=0.470 Sum_probs=45.0
Q ss_pred EEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc---------cccccCCcceEEEec
Q 040300 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG---------ICVKKCPFEAIQIIN 74 (605)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g---------~~~~~cp~~ai~i~n 74 (605)
.++++|.++|. .| ..|...||. .+|.+....+ ..+.|++|| .||..||..||.+..
T Consensus 208 g~v~id~~kCi--gC-g~Cv~~CP~-----~AI~~~~~~~----~~~kC~~Cg~ri~~G~~P~Cv~~CP~~Ai~~g~ 272 (512)
T 1q16_B 208 GIVLIDQDKCR--GW-RMCITGCPY-----KKIYFNWKSG----KSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGV 272 (512)
T ss_dssp CCEEECTTTCC--CC-CCHHHHCTT-----CCEEEETTTT----EEEECCTTHHHHTTTCCCHHHHTCTTCCEEEEE
T ss_pred CeEEECHHHCC--Cc-hHHHhhCCc-----cceecccCCC----CcccCcCCCchhhcCCCCceEeeCchhhhhccc
Confidence 35789999996 58 579999997 3677766543 356899999 999999999998764
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0007 Score=66.53 Aligned_cols=40 Identities=30% Similarity=0.280 Sum_probs=27.5
Q ss_pred eeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 359 l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
+.+.+|.+. .+.+|.+++|.|++||||||+++.|+..+.+
T Consensus 13 ~~~~~~~~~--~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQ--SNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CC--CCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEe--ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 445555544 1235678999999999999999999998876
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0085 Score=64.27 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=28.4
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeee
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i 405 (605)
+++++++|+||+||||++..|++.+.+..+.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~V 129 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP 129 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 47899999999999999999999998876654
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0005 Score=71.74 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=27.2
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeee
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~ 404 (605)
|.+++|+|+||+|||||++.|+|.+.+..+.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~ 86 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLK 86 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 4789999999999999999999998776554
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=70.20 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=24.3
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcC
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
+..|..+||+|.||+|||||++.|+|.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 357889999999999999999999998
|
| >1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0006 Score=52.57 Aligned_cols=25 Identities=28% Similarity=0.826 Sum_probs=21.5
Q ss_pred ceeeccccccccccccccCCcceEEE
Q 040300 47 IAFISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 47 ~~~i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
+..|+++.|+|||.|++.|| ++|.+
T Consensus 3 ~~~id~~~C~~C~~C~~~Cp-~~~~~ 27 (66)
T 1sj1_A 3 KVSVDQDTCIGDAICASLCP-DVFEM 27 (66)
T ss_dssp EEEECTTTCCCCCHHHHHCT-TTEEE
T ss_pred EEEECcccCcCchHHHHhCC-ceEEE
Confidence 35788889999999999999 48875
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=61.44 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.7
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHc
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~G 396 (605)
.|.+++|+|++||||||+.+.|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999984
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0011 Score=63.12 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
...+++|+|++||||||+.+.|++.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999865
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0011 Score=63.28 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+++|+|++||||||+.+.|++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998765
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0012 Score=64.82 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=29.5
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
+.+|.++.|.|++||||||+++.|+..+.+ .+.+
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 458999999999999999999999999876 4443
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0029 Score=65.06 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=23.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G 125 (605)
.+|+++.|.|++|+|||||+.-++.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999988875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0018 Score=59.25 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.8
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998653
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0019 Score=59.16 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 605 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-24 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-25 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-15 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-24 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-22 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-16 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-23 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 6e-18 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-23 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-22 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-22 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-21 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-22 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-16 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-22 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-20 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-22 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-19 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-18 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-22 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-20 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-21 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 9e-20 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-21 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-17 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-21 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 9e-21 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 9e-20 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-19 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-18 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-13 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-08 | |
| d1dura_ | 55 | d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus as | 3e-09 | |
| d1dura_ | 55 | d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus as | 6e-06 | |
| d2fdna_ | 55 | d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici | 3e-09 | |
| d2fdna_ | 55 | d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici | 2e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-09 | |
| d1bc6a_ | 77 | d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [Tax | 1e-08 | |
| d1gtea5 | 173 | d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogen | 2e-08 | |
| d1jb0c_ | 80 | d.58.1.2 (C:) Photosystem I iron-sulfur protein Ps | 3e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-06 | |
| d1xera_ | 103 | d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. | 6e-08 | |
| d1xera_ | 103 | d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. | 5e-06 | |
| d1hfel2 | 85 | d.58.1.5 (L:2-86) Fe-only hydrogenase larger subun | 1e-07 | |
| d1hfel2 | 85 | d.58.1.5 (L:2-86) Fe-only hydrogenase larger subun | 2e-05 | |
| d1h98a_ | 77 | d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [Ta | 1e-06 | |
| d1iqza_ | 81 | d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyt | 2e-06 | |
| d3c7bb1 | 65 | d.58.1.5 (B:197-261) DsrB insert domain {Archaeogl | 3e-06 | |
| d2c42a5 | 117 | d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoredu | 2e-05 | |
| d2c42a5 | 117 | d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoredu | 0.001 | |
| d2fug91 | 154 | d.58.1.5 (9:26-179) NADH-quinone oxidoreductase ch | 4e-05 | |
| d2fug91 | 154 | d.58.1.5 (9:26-179) NADH-quinone oxidoreductase ch | 7e-04 | |
| d1blua_ | 80 | d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [T | 7e-05 | |
| d1blua_ | 80 | d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [T | 4e-04 | |
| d1fxra_ | 64 | d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacte | 2e-04 | |
| d1fxra_ | 64 | d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacte | 0.003 | |
| d7fd1a_ | 106 | d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [ | 4e-04 | |
| d1jnrb_ | 149 | d.58.1.5 (B:) Adenylylsulfate reductase B subunit | 4e-04 | |
| d1jnrb_ | 149 | d.58.1.5 (B:) Adenylylsulfate reductase B subunit | 0.002 | |
| d3c8ya3 | 83 | d.58.1.5 (A:127-209) Fe-only hydrogenase, second d | 4e-04 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 6e-04 | |
| d1fxda_ | 58 | d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [T | 6e-04 | |
| d1fxda_ | 58 | d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [T | 0.003 | |
| d1sj1a_ | 66 | d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus | 6e-04 | |
| d1sj1a_ | 66 | d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus | 0.001 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.001 | |
| d1vjwa_ | 59 | d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [T | 0.001 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.001 | |
| d1rgva_ | 80 | d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [Ta | 0.002 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 108 bits (270), Expect = 5e-27
Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 11/199 (5%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR---------FNNPPDWQEILTYFRGSE 151
G V ++G NG GKST + ++ G LK + GR P +
Sbjct: 28 NKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQT 87
Query: 152 LQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVID 211
Q + +NL +I P + +++ + + L L+ + D
Sbjct: 88 PQPLKEMTVLENL--LIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD 145
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
R G+LSGG+++ I + N ++ + DEP + + V L ++
Sbjct: 146 RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI 205
Query: 272 VEHDLSVLDYLSDFICCLY 290
+EH L ++ D + ++
Sbjct: 206 IEHRLDIVLNYIDHLYVMF 224
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 99.3 bits (247), Expect = 5e-24
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 36/210 (17%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----------VEDSDVEIPEF 413
+ V +G+ + +++G NG+GK+T I ++ G LK D E+ +
Sbjct: 25 ISVNKGD-----VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 414 NVSYKPQKISPKFQSTVRH-----------------LLHQKIRDSYTHPQFVSDVMKPLL 456
+ Q P + TV + I + +++ L
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 457 IEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516
+ L D++ LSGG+++ V + L + ++DEP A + + L
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE--LK 197
Query: 517 AK-KTAFVVEHDFIMATYLADRVIV-YEGQ 544
AK T ++EH + D + V + GQ
Sbjct: 198 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 104 bits (262), Expect = 4e-26
Identities = 63/207 (30%), Positives = 97/207 (46%), Gaps = 25/207 (12%)
Query: 357 KTQGNFK------LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS-------V 403
K GNF L + +GEF +V+LG +G GKTT +RM+AGL +P
Sbjct: 14 KRFGNFTAVNKLNLTIKDGEF-----LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDR 68
Query: 404 EDSDVEIPEFNVSYKPQKISPKFQSTVRH-----LLHQKIRDSYTHPQFVSDVMKPLLIE 458
+ + + + N+S Q + TV L +K + V + L IE
Sbjct: 69 DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID-KRVRWAAELLQIE 127
Query: 459 QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK 518
+L+++ LSGG+ QRVA+ + D+ L+DEP + LD++ R+ IK+ K
Sbjct: 128 ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 187
Query: 519 KTAFVVEHDFIMATYLADRVIV-YEGQ 544
T V HD + A + DR+ V GQ
Sbjct: 188 VTTIYVTHDQVEAMTMGDRIAVMNRGQ 214
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 92.9 bits (231), Expect = 5e-22
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 28/200 (14%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--------FNNPPDWQEILTYFRGSEL 152
+ G+ L L+G +G GK+T L+++AG +P GR PP + I F+ +
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAV 89
Query: 153 QNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKAD-LCTDLDLNQVID 211
+ T + +N+ +K + KDE D + L + ++++
Sbjct: 90 WPHMT--VYENIAFPLKIKKFP----------------KDEIDKRVRWAAELLQIEELLN 131
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPNSYVI 270
R LSGG+ QR A+A V ++ + DEP S LD K R+ ++ L + I
Sbjct: 132 RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 191
Query: 271 VVEHDLSVLDYLSDFICCLY 290
V HD + D I +
Sbjct: 192 YVTHDQVEAMTMGDRIAVMN 211
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 102 bits (254), Expect = 4e-25
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 26/230 (11%)
Query: 357 KTQGNFKLKV---VEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVE 409
K GNF+L V + ++ V+LG G GK+ F+ ++AG++KPD + +D+
Sbjct: 9 KRLGNFRLNVDFEMGRDY-----CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT 63
Query: 410 IP---EFNVSYKPQKIS--PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQE 464
+ + PQ + P + + + V ++ + L I L+D++
Sbjct: 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK 123
Query: 465 VVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524
LSGGE QRVAL L + L+DEP + +D + + V + ++ V
Sbjct: 124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183
Query: 525 EHDFIMATYLADRVIV-YEG----QPSVDCVANAP----QSLLTGMNLFL 565
HD I A LAD V V G + + + +A L+ NL L
Sbjct: 184 THDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNLLL 233
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 74.3 bits (182), Expect = 1e-15
Identities = 60/250 (24%), Positives = 100/250 (40%), Gaps = 27/250 (10%)
Query: 79 LDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP 138
L R G F+L+ + L+G G GKS L+++AG +KP+ G
Sbjct: 3 LKVRAEKRLG--NFRLN-VDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEV---- 55
Query: 139 DWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGN---VGQVLDQKDERD 195
G+++ T + + PQ P G ++ ERD
Sbjct: 56 -------RLNGADI----TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD 104
Query: 196 MKAD-LCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLK 254
+ + L + ++DR LSGGE QR A+A V + + DEP S +D+K +
Sbjct: 105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 255 AAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY-GKPGAYGVVTLPFSVREGINIF 312
+ +R + R + ++ V HDL L+D + + G+ G + N
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK---LKELFSAKNGE 221
Query: 313 LAGFVPTENL 322
+A F+ NL
Sbjct: 222 VAEFLSARNL 231
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 100 bits (249), Expect = 2e-24
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 28/222 (12%)
Query: 77 KDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNN 136
+D+ + + R GP + ++ R G++L LVG NG GKST L +AG + G
Sbjct: 7 QDVAE--STRLGPLSGEV------RAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSI-- 55
Query: 137 PPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDM 196
F G L+ + L +A + Q V + K ++
Sbjct: 56 ---------QFAGQPLEAWSATKL-ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL 105
Query: 197 KADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA-------EIYMFDEPSSYLDV 249
D+ L L+ + R+ LSGGE QR +A V +Q ++ + DEP + LDV
Sbjct: 106 LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 250 KQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291
Q+ +++ +L + +++ HDL+ + L G
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKG 207
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 99.6 bits (248), Expect = 2e-24
Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 23/201 (11%)
Query: 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD--------SVEDSDVEIP 411
G +V GE I+ ++G NG GK+T + +AG+ +E
Sbjct: 16 GPLSGEVRAGE-----ILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKL 70
Query: 412 EFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGG 471
+ +Y Q+ +P F + V H L D T + ++DV L ++ + + LSGG
Sbjct: 71 ALHRAYLSQQQTPPFATPVWHYLTLHQHD-KTRTELLNDVAGALALDDKLGRSTNQLSGG 129
Query: 472 ELQRVALCLCLGKPA-------DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524
E QRV L + + + L+DEP LD Q+ K++ + +
Sbjct: 130 EWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA-LCQQGLAIVMS 188
Query: 525 EHDFIMATYLADRVIV-YEGQ 544
HD A R + G+
Sbjct: 189 SHDLNHTLRHAHRAWLLKGGK 209
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 100 bits (250), Expect = 2e-24
Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 29/205 (14%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
L+V +GEF +++LG +G GKTT +RM+AGL +P + + I + V+ +
Sbjct: 21 EMSLEVKDGEF-----MILLGPSGCGKTTTLRMIAGLEEPSRGQ---IYIGDKLVADPEK 72
Query: 421 KISPKFQSTVRHLLHQ--------KIRDSYTHPQF------------VSDVMKPLLIEQL 460
I + ++ Q + D+ P V +V + L + +L
Sbjct: 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL 132
Query: 461 MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKT 520
++++ LSGG+ QRVAL + + ++L+DEP + LD++ R+ +K+ T
Sbjct: 133 LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192
Query: 521 AFVVEHDFIMATYLADRVIV-YEGQ 544
V HD + A + DR+ V G
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRGV 217
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 93.1 bits (231), Expect = 6e-22
Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 12/195 (6%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
+ G+ + L+G +G GK+T L+++AG +P+ G+ + + +G + I
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI--GDKLVADPEKGIFVPPKDRDIA 84
Query: 161 ----EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGD 216
L + P ++ + +++ ++ L L ++++R +
Sbjct: 85 MVFQSYALYPHMTVYDNIAFPLKLRK-----VPRQEIDQRVREVAELLGLTELLNRKPRE 139
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHD 275
LSGG+ QR A+ V+ ++++ DEP S LD K R++ ++ L R I V HD
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199
Query: 276 LSVLDYLSDFICCLY 290
+ D I +
Sbjct: 200 QVEAMTMGDRIAVMN 214
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 99.4 bits (247), Expect = 3e-24
Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 9/197 (4%)
Query: 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE-------DSDVE 409
+ NF L + + + V+LG G GKT F+ ++AG PDS +D+
Sbjct: 9 RKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS 68
Query: 410 IPEFNVSYKPQKISP-KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNL 468
+ ++++ Q S + ++L P+ V D + L IE L+D+ + L
Sbjct: 69 PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128
Query: 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528
SGGE QRVAL L I L+DEP + LD + A +++ K T + HD
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 529 IMATYLADRVIV-YEGQ 544
A +ADR+ V +G+
Sbjct: 189 TEARIMADRIAVVMDGK 205
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 76.3 bits (187), Expect = 3e-16
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 24/216 (11%)
Query: 81 KDTTHRYGPNTFKLHR--LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP 138
+ + ++ F L L V G+ ++G G GK+ L+++AG P
Sbjct: 5 ESLSRKWK--NFSLDNLSLKV-ESGEYFVILGPTGAGKTLFLELIAGFH---------VP 52
Query: 139 DWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGN---VGQVLDQKDERD 195
D IL + T + + Q P G + + +
Sbjct: 53 DSGRILLDGK------DVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106
Query: 196 MKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA 255
D DL + ++DRN LSGGE QR A+A V N +I + DEP S LD + + A
Sbjct: 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 256 AQVVRSLLRPNSY-VIVVEHDLSVLDYLSDFICCLY 290
+++ L + N V+ + HD + ++D I +
Sbjct: 167 REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVM 202
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 96.9 bits (241), Expect = 2e-23
Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 17/196 (8%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE-------DSDVEIPEF 413
+ L + EGEF +V +G +G GK+T +RM+AGL S + +D E
Sbjct: 18 DINLDIHEGEF-----VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAER 72
Query: 414 NVSYKPQKISPKFQSTVRHLLHQKIRDSYTHP----QFVSDVMKPLLIEQLMDQEVVNLS 469
V Q + +V + ++ + Q V+ V + L + L+D++ LS
Sbjct: 73 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALS 132
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFI 529
GG+ QRVA+ L ++L+DEP + LD+ R+ I R +T V HD +
Sbjct: 133 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 192
Query: 530 MATYLADRVIV-YEGQ 544
A LAD+++V G+
Sbjct: 193 EAMTLADKIVVLDAGR 208
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 81.1 bits (200), Expect = 6e-18
Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 18/195 (9%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR---FNNPPDWQEILTYFRGSELQNYFT 157
G+ + VG +G GKST L+++AG G + G Q+Y
Sbjct: 24 HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYAL 83
Query: 158 RILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKAD-LCTDLDLNQVIDRNVGD 216
+ + + K + + + + + L L ++DR
Sbjct: 84 YPHLSVAENMSFGLKLAGAKK-------------EVINQRVNQVAEVLQLAHLLDRKPKA 130
Query: 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHD 275
LSGG+ QR AI V +++ DEP S LD R++ + L + +I V HD
Sbjct: 131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 190
Query: 276 LSVLDYLSDFICCLY 290
L+D I L
Sbjct: 191 QVEAMTLADKIVVLD 205
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 96.5 bits (240), Expect = 3e-23
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 18/196 (9%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
GQ++ L+G NG GK+T L +AG + +I+ + +
Sbjct: 30 PRGQIVTLIGANGAGKTTTLSAIAGLV---------RAQKGKIIFNGQDITNKPAHVI-- 78
Query: 161 EDNLKAIIKPQYVDHIPKA-VQGNV-GQVLDQKDERDMKADLCTDLD----LNQVIDRNV 214
+ + + P+ P+ V N+ ++KD+ +K DL L + + +
Sbjct: 79 -NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEH 274
G LSGGE Q AI + ++ M DEPS L + +V++ + + + +++VE
Sbjct: 138 GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
Query: 275 DLSVLDYLSDFICCLY 290
+ ++ + L
Sbjct: 198 NALGALKVAHYGYVLE 213
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 93.8 bits (233), Expect = 3e-22
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 21/196 (10%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE----------DSDVEIPEF 413
LKV G+ I+ ++G NG GKTT + +AGL++ + I
Sbjct: 27 LKVPRGQ-----IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 414 NVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLL----IEQLMDQEVVNLS 469
++ P+ + TV L + D+ +++ + Q LS
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLS 141
Query: 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFI 529
GGE Q +A+ L + ++DEPS L +VI++ I T +VE + +
Sbjct: 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK-INQEGTTILLVEQNAL 200
Query: 530 MATYLADRVIV-YEGQ 544
A +A V GQ
Sbjct: 201 GALKVAHYGYVLETGQ 216
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 93.8 bits (233), Expect = 1e-22
Identities = 35/186 (18%), Positives = 74/186 (39%), Gaps = 16/186 (8%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDVEIPEFNVS 416
+ + +G ++ G NG GKTT ++ ++ LKP + + +
Sbjct: 19 RITMTIEKGN-----VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 73
Query: 417 YKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQE--VVNLSGGELQ 474
+ P++I + +V L + Y +++M L +++D + + LS G ++
Sbjct: 74 FLPEEIIVPRKISVEDYLKA-VASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIR 132
Query: 475 RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL 534
RV L L A+IY++D+P +D + + K I + + ++
Sbjct: 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE--LS--Y 188
Query: 535 ADRVIV 540
D
Sbjct: 189 CDVNEN 194
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 88.8 bits (220), Expect = 7e-21
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
G V+ G NGIGK+T LK ++ LKP EI + G + +I
Sbjct: 25 EKGNVVNFHGPNGIGKTTLLKTISTYLKP---------LKGEI--IYNGVPITKVKGKI- 72
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVID--RNVGDLS 218
+ + + +V+ + V + K ++ L+ +V+D + +G+LS
Sbjct: 73 -----FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELS 127
Query: 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV-VEHDLS 277
G ++R +A + NAEIY+ D+P +D + K + + +L+ VI+ +LS
Sbjct: 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 187
Query: 278 VLDY 281
D
Sbjct: 188 YCDV 191
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 94.0 bits (233), Expect = 3e-22
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 22/201 (10%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----------VEDSDVEI 410
N + + GE +LG +G GKTTF+R++AGL P + + + +
Sbjct: 23 NVNINIENGER-----FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 411 PEF--NVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQF----VSDVMKPLLIEQLMDQE 464
P + Q + T + + + + V +V K L I +++
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 465 VVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524
LSG + QRVAL L K + L+DEP + LD+ R A ++K T VV
Sbjct: 138 PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVV 197
Query: 525 EHDFIMATYLADRVIV-YEGQ 544
HD +ADRV V +G+
Sbjct: 198 SHDPADIFAIADRVGVLVKGK 218
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 77.4 bits (190), Expect = 1e-16
Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
G+ G++G +G GK+T ++I+AG P+ G YF + + I+
Sbjct: 29 ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL-----------YFDDRLVASNGKLIV 77
Query: 161 EDNLKAI-IKPQYVDHIPKAVQGNVG------QVLDQKDERDMKADLCTDLDLNQVIDRN 213
+ I + Q P + +++ R ++ LD++ V++
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVV 272
+LSG + QR A+A V++ + + DEP S LD + R A +V+ + ++VV
Sbjct: 138 PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVV 197
Query: 273 EHDLSVLDYLSDFICCLY 290
HD + + ++D + L
Sbjct: 198 SHDPADIFAIADRVGVLV 215
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 93.4 bits (232), Expect = 4e-22
Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 22/207 (10%)
Query: 359 QGNFKLKVVEG---EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----------VED 405
QG ++ + QI ++G +G GK+T IR + L +P
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL 72
Query: 406 SDVEIPEF--NVSYKPQKISPKFQSTVR-----HLLHQKIRDSYTHPQFVSDVMKPLLIE 458
S+ E+ + + Q + TV L + V++++ + +
Sbjct: 73 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVK-RRVTELLSLVGLG 131
Query: 459 QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK 518
D NLSGG+ QRVA+ L + L DE ++ LD +++K
Sbjct: 132 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 519 KTAFVVEHDFIMATYLADRVIV-YEGQ 544
T ++ H+ + + D V V G+
Sbjct: 192 LTILLITHEMDVVKRICDCVAVISNGE 218
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 87.6 bits (217), Expect = 4e-20
Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 23/222 (10%)
Query: 81 KDTTHRYGPNTFKLHRL-PVP---RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--F 134
+ T + T + L V GQ+ G++G +G GKST ++ + +P G
Sbjct: 5 SNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 64
Query: 135 NNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD----Q 190
+ + LT SEL +I +I + + V GNV L+
Sbjct: 65 DG-----QELTTLSESELTKARRQI------GMIFQHFNLLSSRTVFGNVALPLELDNTP 113
Query: 191 KDERDMKA-DLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV 249
KDE + +L + + L D +LSGG+ QR AIA N ++ + DE +S LD
Sbjct: 114 KDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 250 KQRLKAAQVVRSLLRPNSY-VIVVEHDLSVLDYLSDFICCLY 290
++++ + R ++++ H++ V+ + D + +
Sbjct: 174 ATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVIS 215
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 93.0 bits (231), Expect = 4e-22
Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 28/206 (13%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV-------- 408
N L + EGEF + ++G +G+GK+T + ++ L KP +++
Sbjct: 23 NVNLNIKEGEF-----VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 409 -EIPEFNVSYKPQKISPKFQSTVRHL----LHQKIRDSYTHPQFVSDVMK----PLLIEQ 459
+I + + Q+ + T L K R + + + ++ L E+
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137
Query: 460 LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKK 519
+ + LSGG+ QRVA+ L I L D+P+ LDS+ +++K+ K
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGK 197
Query: 520 TAFVVEHDFIMATYLADRVIV-YEGQ 544
T VV HD +A + +R+I +G+
Sbjct: 198 TVVVVTHDINVARF-GERIIYLKDGE 222
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 84.9 bits (210), Expect = 3e-19
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 25/203 (12%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR---------FNNPPDWQEILTYFRGSE 151
+ G+ + ++G +G GKST L I+ KP G + + +I G
Sbjct: 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 152 LQNY---FTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQ 208
Q + +N++ + +Y + ++ +R ++ +L +
Sbjct: 89 FQQFNLIPLLTALENVELPLIFKYRGAMSGE----------ERRKRALECLKMAEL-EER 137
Query: 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNS 267
+ LSGG+ QR AIA N I + D+P+ LD K K Q+++ L
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGK 197
Query: 268 YVIVVEHDLSVLDYLSDFICCLY 290
V+VV HD++V + + I L
Sbjct: 198 TVVVVTHDINVARF-GERIIYLK 219
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.4 bits (232), Expect = 5e-22
Identities = 32/198 (16%), Positives = 79/198 (39%), Gaps = 24/198 (12%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIPEFNVSYK 418
+ GE ++G NG+GK+T +L L +P + +P++ Y
Sbjct: 32 GLTFTLRPGEV-----TALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86
Query: 419 PQKISPKFQ------STVRHLLHQKIRDSYTHPQFVSDVMK----------PLLIEQLMD 462
++++ Q +++ + + T + + +K P + +D
Sbjct: 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVD 146
Query: 463 QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF 522
+ LSGG+ Q VAL L + + ++D+ ++ LD+ ++ +++ ++
Sbjct: 147 EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVL 206
Query: 523 VVEHDFIMATYLADRVIV 540
++ + AD ++
Sbjct: 207 LITQHLSLVEQ-ADHILF 223
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.6 bits (204), Expect = 3e-18
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 26/203 (12%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
RPG+V LVG NG GKST +L +P ++L G L Y R L
Sbjct: 38 RPGEVTALVGPNGSGKSTVAALLQNLYQP---------TGGQLL--LDGKPLPQYEHRYL 86
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNV--GQVLDQKDERDMKADLCTDLDL---------NQV 209
+ A+ Q +++Q N+ G E A + + +
Sbjct: 87 HRQVAAV--GQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 144
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPNSY 268
+D LSGG+ Q A+A ++ + + D+ +S LD +L+ Q++ R +
Sbjct: 145 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 269 VIVVEHDLSVLDYLSDFICCLYG 291
V+++ LS+++ +D I L G
Sbjct: 205 VLLITQHLSLVEQ-ADHILFLEG 226
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 93.8 bits (233), Expect = 7e-22
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 24/190 (12%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQ 420
N L + +GE + + G G+GKT+ + ++ G L+ ++ VS+ Q
Sbjct: 54 NINLNIEKGEM-----LAITGSTGSGKTSLLMLILGELEASEGI---IKHSG-RVSFCSQ 104
Query: 421 KISPKFQSTVRHLLH-------QKIRDSYTHPQFVSDVMK-PLLIEQLMDQEVVNLSGGE 472
T++ + + + Q D+ K ++ + V LSGG+
Sbjct: 105 FSW-IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQ 163
Query: 473 LQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAK--KTAFVVEHDFIM 530
R++L + K AD+YL+D P YLD +V + + KT +V +
Sbjct: 164 RARISLARAVYKDADLYLLDSPFGYLDVF---TEEQVFESCVCKLMANKTRILVTSK-ME 219
Query: 531 ATYLADRVIV 540
AD++++
Sbjct: 220 HLRKADKILI 229
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 89.6 bits (222), Expect = 2e-20
Identities = 40/198 (20%), Positives = 73/198 (36%), Gaps = 36/198 (18%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160
G++L + G+ G GK++ L ++ G+L+ + G I
Sbjct: 60 EKGEMLAITGSTGSGKTSLLMLILGELEASEGI-------------------------IK 94
Query: 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDL---------NQVID 211
+ Q+ +P ++ N+ + + R L N V+
Sbjct: 95 HSGRVSFC-SQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 153
Query: 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271
LSGG+ R ++A ++A++Y+ D P YLDV + + L N I+
Sbjct: 154 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 213
Query: 272 VEHDLSVLDYLSDFICCL 289
V + L +D I L
Sbjct: 214 VTSKMEHLRK-ADKILIL 230
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 92.2 bits (229), Expect = 2e-21
Identities = 40/200 (20%), Positives = 80/200 (40%), Gaps = 25/200 (12%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYK 418
+ L + +GE + +G +G GK+T I ++ S + I +F
Sbjct: 36 DINLSIEKGET-----VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 90
Query: 419 PQKIS------PKFQSTVRHLL--------HQKIRDSYTHPQFVSDVMK-PLLIEQLMDQ 463
+I F TV+ + +++ ++ +M P + + +
Sbjct: 91 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 150
Query: 464 EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFV 523
V LSGG+ QR+++ I ++DE ++ LD E + + + L +T +
Sbjct: 151 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV--LSKDRTTLI 208
Query: 524 VEHDFIMATYLADRVIVYEG 543
V H T+ AD+++V E
Sbjct: 209 VAHRLSTITH-ADKIVVIEN 227
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 86.8 bits (215), Expect = 9e-20
Identities = 42/223 (18%), Positives = 85/223 (38%), Gaps = 27/223 (12%)
Query: 81 KDTTHRYGPNTFKLHR---LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN-- 135
+ +Y N + + L + G+ + VG +G GKST + ++ G+
Sbjct: 20 DHVSFQYNDNEAPILKDINLSIE-KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID 78
Query: 136 -------NPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL 188
+ + + + F+ +++N+ P A V +
Sbjct: 79 GHNIKDFLTGSLRNQIGLVQQDNI--LFSDTVKENIL--------LGRPTATDEEVVEAA 128
Query: 189 DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
+ D +L D + LSGG+ QR +IA + + N I + DE +S LD
Sbjct: 129 KMANAHDFIMNLPQGYD--TEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 249 VKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291
++ + + L + + ++V H LS + + +D I +
Sbjct: 187 LESESIIQEALDVLSK-DRTTLIVAHRLSTITH-ADKIVVIEN 227
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 91.8 bits (228), Expect = 2e-21
Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 26/222 (11%)
Query: 81 KDTTHRYGPNTFKLHR---LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP 137
++ T Y R L +P G+ + LVG +G GKST ++
Sbjct: 17 RNVTFTYPGREVPALRNINLKIP-AGKTVALVGRSGSGKSTIASLITRFY---------D 66
Query: 138 PDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMK 197
D IL G +L+ Y L + + + + ++ + A + + E+ +
Sbjct: 67 IDEGHIL--MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE 124
Query: 198 A-------DLCTDLD--LNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD 248
A D +D L+ +I N LSGG+ QR AIA ++++ I + DE +S LD
Sbjct: 125 AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 184
Query: 249 VKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290
+ + L + N +V+ H LS ++ +D I +
Sbjct: 185 TESERAIQAALDELQK-NRTSLVIAHRLSTIEQ-ADEIVVVE 224
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 90.7 bits (225), Expect = 5e-21
Identities = 36/198 (18%), Positives = 79/198 (39%), Gaps = 26/198 (13%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD--SVEDSDVEIPEFNVSYK 418
N LK+ G+ + ++G +G+GK+T ++ D + ++ E+ ++
Sbjct: 33 NINLKIPAGKT-----VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87
Query: 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSD----------------VMKPLLIEQLMD 462
+++ Q+ +Y + S ++ ++
Sbjct: 88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG 147
Query: 463 QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF 522
+ V LSGG+ QR+A+ L + + I ++DE ++ LD+E + L +T+
Sbjct: 148 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE--LQKNRTSL 205
Query: 523 VVEHDFIMATYLADRVIV 540
V+ H AD ++V
Sbjct: 206 VIAHRLSTIEQ-ADEIVV 222
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 90.7 bits (225), Expect = 4e-21
Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 30/204 (14%)
Query: 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD--SVEDSDVEIPEFNVSYK 418
N L + +GE I ++G +G+GK+T +++ P+ V ++ + ++
Sbjct: 21 NINLSIKQGEV-----IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL 75
Query: 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMK-----------------PLLIEQLM 461
+++ Q LL++ I D+ + V K ++
Sbjct: 76 RRQVGVVLQDN--VLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 133
Query: 462 DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521
++ LSGG+ QR+A+ L I + DE ++ LD E V + + + + +T
Sbjct: 134 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK--ICKGRTV 191
Query: 522 FVVEHDFIMATYLADRVIV-YEGQ 544
++ H ADR+IV +G+
Sbjct: 192 IIIAHRLSTVKN-ADRIIVMEKGK 214
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 80.0 bits (197), Expect = 2e-17
Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 29/224 (12%)
Query: 81 KDTTHRYGPNTFKLHR---LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP 137
++ RY P++ + L + G+V+G+VG +G GKST K++
Sbjct: 5 RNIRFRYKPDSPVILDNINLSIK-QGEVIGIVGRSGSGKSTLTKLIQRFY---------I 54
Query: 138 PDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL----DQKDE 193
P+ ++L G +L L + + Q + +++ N+ +K
Sbjct: 55 PENGQVL--IDGHDLALADPNWLRRQVGVV--LQDNVLLNRSIIDNISLANPGMSVEKVI 110
Query: 194 RDMKADLCTDL------DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYL 247
K D N ++ LSGG+ QR AIA V N +I +FDE +S L
Sbjct: 111 YAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 170
Query: 248 DVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291
D + + + + + VI++ H LS + +D I +
Sbjct: 171 DYESEHVIMRNMHKICK-GRTVIIIAHRLSTVKN-ADRIIVMEK 212
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 90.1 bits (223), Expect = 5e-21
Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 30/229 (13%)
Query: 69 AIQIINLPKDLDKDTTHRYGPNT------FKLHRLPVPRPGQVLGLVGTNGIGKSTALKI 122
A+ + +L R G F++ G++ GL+G NG GK+T L+I
Sbjct: 2 AVVVKDL--------RKRIGKKEILKGISFEI------EEGEIFGLIGPNGAGKTTTLRI 47
Query: 123 LAGKLKPNLGR-FNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQ 181
++ +KP+ G + E R N++ I ++V
Sbjct: 48 ISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA--- 104
Query: 182 GNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFD 241
+ +M L + I V S G +++ IA + N + + D
Sbjct: 105 ------SSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD 158
Query: 242 EPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290
EP+S LDV + ++++ + ++V H++ +++L D I ++
Sbjct: 159 EPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIH 207
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 84.7 bits (209), Expect = 4e-19
Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 18/189 (9%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE--------DSDVEIPEFNV 415
++ EGE I ++G NG GKTT +R+++ L+KP S + +
Sbjct: 23 FEIEEGE-----IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77
Query: 416 SYKPQKISPKFQSTV----RHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGG 471
SY P++ R + S + V + + + + V S G
Sbjct: 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKG 137
Query: 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA 531
++++ + L + ++DEP++ LD K++K+ T V H+ +
Sbjct: 138 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ-ASQEGLTILVSSHNMLEV 196
Query: 532 TYLADRVIV 540
+L DR+ +
Sbjct: 197 EFLCDRIAL 205
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 89.5 bits (222), Expect = 9e-21
Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 27/214 (12%)
Query: 350 YKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSD 407
+ Y + + + I G +G GK+T +L +P + +
Sbjct: 9 FAYDDSEQILRDISFEAQPNSI-----IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63
Query: 408 VEIPEFNVSYKPQKISPK------FQSTVRHLLHQKIRDSYTHPQFVSDV---------- 451
I ++ +I T+R L + YT +
Sbjct: 64 QPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 452 MKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK 511
P + + + V +SGG+ QR+A+ + I ++DE +A LDSE + K +
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 512 RFILHAKKTAFVVEHDFIMATYLADRVIV-YEGQ 544
L +T V+ H AD++ +GQ
Sbjct: 184 S--LMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQ 214
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 86.8 bits (215), Expect = 9e-20
Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 25/221 (11%)
Query: 81 KDTTHRYGPNTFKLHR--LPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN--- 135
+ Y + L P ++ G +G GKST +L +P G
Sbjct: 5 RHVDFAYDDSEQILRDISFEAQ-PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63
Query: 136 ------NPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD 189
+ +W+ + + + +NL ++ Y D V
Sbjct: 64 QPIDNISLENWRSQIGFVSQD--SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSF 121
Query: 190 QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDV 249
++ D + +SGG+ QR AIA ++N +I M DE ++ LD
Sbjct: 122 VENMPDQLNTE---------VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172
Query: 250 KQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290
+ + + SL++ +V+ H LS + +D I +
Sbjct: 173 ESESMVQKALDSLMK-GRTTLVIAHRLSTIVD-ADKIYFIE 211
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 84.5 bits (209), Expect = 6e-19
Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 24/207 (11%)
Query: 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR-------FNNPPDWQEILTYFRGSELQ 153
R G V+ ++G++G GKST L+ + KP+ G N D L ++L+
Sbjct: 26 RAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLR 85
Query: 154 NYFTRI--------LEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLD 205
TR+ L ++ + + V P V G L + D R+ +
Sbjct: 86 LLRTRLTMVFQHFNLWSHMTVL---ENVMEAPIQVLG-----LSKHDARERALKYLAKVG 137
Query: 206 L-NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264
+ + + LSGG+ QR +IA ++ +FDEP+S LD + + ++++ L
Sbjct: 138 IDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE 197
Query: 265 PNSYVIVVEHDLSVLDYLSDFICCLYG 291
++VV H++ ++S + L+
Sbjct: 198 EGKTMVVVTHEMGFARHVSSHVIFLHQ 224
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 83.0 bits (205), Expect = 2e-18
Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 39/212 (18%)
Query: 364 LKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS--VEDSDVEIPEFNVSYKPQK 421
L+ G+ I ++G +G+GK+TF+R + L KP + + I K
Sbjct: 23 LQARAGDV-----ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 422 ISPK-------------FQS-------TVRH------LLHQKIRDSYTHPQFVSDVMKPL 455
++ K FQ TV + + + + + K
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVG 137
Query: 456 LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515
+ E+ + V+LSGG+ QRV++ L D+ L DEP++ LD E +V++
Sbjct: 138 IDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV---GEVLRIMQQ 194
Query: 516 HAK--KTAFVVEHDFIMATYLADRVIV-YEGQ 544
A+ KT VV H+ A +++ VI ++G+
Sbjct: 195 LAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 65.4 bits (158), Expect = 5e-13
Identities = 16/167 (9%), Positives = 45/167 (26%), Gaps = 15/167 (8%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ 436
I++ GE G GKTT ++ + L ++ E+ + + + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 437 KIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496
+ ++ + + A + +IDE
Sbjct: 63 FFTSKKLVGSYG------------VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGK 110
Query: 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543
++ ++++ + + L + G
Sbjct: 111 MELFSKKFRD--LVRQIMHDPNVNVVATIPIRDVHP-LVKEIRRLPG 154
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 53.1 bits (126), Expect = 1e-08
Identities = 19/181 (10%), Positives = 44/181 (24%), Gaps = 33/181 (18%)
Query: 106 LGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLK 165
+ + G G+GK+T +K + +L F R E +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGF------------------WTEEVRDPETKKR 44
Query: 166 AIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRF 225
+ + K ++ + +
Sbjct: 45 TGFRIITTEGKKKIFSSKFFTSKKLVGSYG--------------VNVQYFEELAIPILER 90
Query: 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDF 285
A ++ + DE ++ + V + + PN V+ V + +
Sbjct: 91 AYREAKKDRRKVIIIDEIGKMELFSKKFR-DLVRQIMHDPNVNVVATIPIRDVHPLVKEI 149
Query: 286 I 286
Sbjct: 150 R 150
|
| >d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]} Length = 55 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Peptostreptococcus asaccharolyticus [TaxId: 1258]
Score = 50.8 bits (121), Expect = 3e-09
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFE 68
A V +D C C CK CPV CI+ I + CI CG C CP
Sbjct: 1 AYVINDSCI--ACGA-CKPECPVN-----CIQEGSIYAI---DADSCIDCGSCASVCPVG 49
Query: 69 AIQI 72
A
Sbjct: 50 APNP 53
|
| >d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]} Length = 55 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Peptostreptococcus asaccharolyticus [TaxId: 1258]
Score = 41.5 bits (97), Expect = 6e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 48 AFISEELCIGCGICVKKCPFEAIQIINLPK 77
A++ + CI CG C +CP IQ ++
Sbjct: 1 AYVINDSCIACGACKPECPVNCIQEGSIYA 30
|
| >d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]} Length = 55 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Clostridium acidurici [TaxId: 1556]
Score = 50.7 bits (121), Expect = 3e-09
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFE 68
A V ++ C C C+ CPV I I + CI CG C CP +
Sbjct: 1 AYVINEACI--SCGA-CEPECPV-----NAISSGD--DRYVIDADTCIDCGACAGVCPVD 50
Query: 69 AI 70
A
Sbjct: 51 AP 52
|
| >d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]} Length = 55 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Clostridium acidurici [TaxId: 1556]
Score = 46.1 bits (109), Expect = 2e-07
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 48 AFISEELCIGCGICVKKCPFEAIQIINLPKDLDKD 82
A++ E CI CG C +CP AI + +D D
Sbjct: 1 AYVINEACISCGACEPECPVNAISSGDDRYVIDAD 35
|
| >d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]} Length = 77 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: 7-Fe ferredoxin domain: Ferredoxin species: Bacillus schlegelii [TaxId: 1484]
Score = 49.7 bits (118), Expect = 1e-08
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V ++ C + C + CPV + +I ++CI CG C CP
Sbjct: 1 AYVITEPCI--GTKDASCVEVCPVDCIHE-------GEDQYYIDPDVCIDCGACEAVCPV 51
Query: 68 EAIQII-NLPKDLDK 81
AI +P++
Sbjct: 52 SAIYHEDFVPEEWKS 66
|
| >d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Dihydropyrimidine dehydrogenase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 52.0 bits (124), Expect = 2e-08
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCP 66
+A++ + C C + C +C + C GC +C+ CP
Sbjct: 100 VVAVIDEEMCI--NCGK-CYMTCND---SGYQAIQFDPETHLPTVTDTCTGCTLCLSVCP 153
Query: 67 FE-AIQIINLPKDLDKDTT 84
I++++ +
Sbjct: 154 IIDCIRMVSRTTPYEPKRG 172
|
| >d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]} Length = 80 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: 7-Fe ferredoxin domain: Photosystem I iron-sulfur protein PsaC species: Synechococcus elongatus [TaxId: 32046]
Score = 49.0 bits (116), Expect = 3e-08
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 9 AIVSSDRCKPKKCRQECKKSCPV-VKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
+ D C C Q C ++CP V + E C+GC C CP
Sbjct: 3 TVKIYDTCI--GCTQ-CVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPT 59
Query: 68 EAIQIINLPKDLDKDTTHRYG 88
+ + I +TT G
Sbjct: 60 DFLSIRVYL---GAETTRSMG 77
|
| >d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Archaeal ferredoxins domain: Ferredoxin species: Archaeon Sulfolobus sp. [TaxId: 2288]
Score = 49.0 bits (116), Expect = 6e-08
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 8 IAIVSSDRCKPKKCRQECKKSCPV--VKTGKLCIEVTPAAKIAFISEELCIGCGICVKKC 65
I V D C C +CPV + K ++E+ CI C CV C
Sbjct: 37 IVGVDFDLCI--ADGS-CINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVC 93
Query: 66 PFEAIQI 72
P AI +
Sbjct: 94 PVAAIDV 100
|
| >d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Archaeal ferredoxins domain: Ferredoxin species: Archaeon Sulfolobus sp. [TaxId: 2288]
Score = 43.2 bits (101), Expect = 5e-06
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 30 PVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKD 78
PV L I T + +LCI G C+ CP Q + P
Sbjct: 24 PVEPPKVLGIHGTIVG----VDFDLCIADGSCINACPVNVFQWYDTPGH 68
|
| >d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Fe-only hydrogenase larger subunit, N-domain species: Desulfovibrio desulfuricans [TaxId: 876]
Score = 47.4 bits (112), Expect = 1e-07
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCP 66
+ +C C C + CP I + E CI CG C+ CP
Sbjct: 25 HFVQIDEAKCI--GCDT-CSQYCPTA-----AIFGEMGEPHSIPHIEACINCGQCLTHCP 76
Query: 67 FEAI 70
AI
Sbjct: 77 ENAI 80
|
| >d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Fe-only hydrogenase larger subunit, N-domain species: Desulfovibrio desulfuricans [TaxId: 876]
Score = 40.8 bits (95), Expect = 2e-05
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 50 ISEELCIGCGICVKKCPFEAIQIIN 74
I E CIGC C + CP AI
Sbjct: 29 IDEAKCIGCDTCSQYCPTAAIFGEM 53
|
| >d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]} Length = 77 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: 7-Fe ferredoxin domain: Ferredoxin species: Thermus thermophilus [TaxId: 274]
Score = 44.3 bits (104), Expect = 1e-06
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 11 VSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEA 69
V + C + Q C + CP + +I E CI CG CV CP A
Sbjct: 3 VICEPCI--GVKDQSCVEVCP-------VECIYDGGDQFYIHPEECIDCGACVPACPVNA 53
Query: 70 IQI-INLPKDLDK 81
I ++P+
Sbjct: 54 IYPEEDVPEQWKS 66
|
| >d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]} Length = 81 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin species: Bacillus thermoproteolyticus [TaxId: 1427]
Score = 43.5 bits (102), Expect = 2e-06
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 7 RIAIVSSDRCKPKKCRQECKKSCPVV----KTGKLCIEVTPAAKIAFISEELCIGCGICV 62
+ IV + C C C + P + + G + + I + + L
Sbjct: 2 KYTIVDKETCIA--CGA-CGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAF 58
Query: 63 KKCPFEAIQIINLPKDLD 80
+ CP ++I++ + P D D
Sbjct: 59 EGCPTDSIKVADEPFDGD 76
|
| >d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 65 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: DsrB insert domain species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 42.7 bits (100), Expect = 3e-06
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 25 CKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAI 70
+CP ++ K + E C+ CG C CP +
Sbjct: 20 TVAACPTG-----ALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPL 60
|
| >d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain V species: Desulfovibrio africanus [TaxId: 873]
Score = 41.8 bits (97), Expect = 2e-05
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 44 AAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRY 87
A + E CI C C CP AI + ++ +
Sbjct: 10 AINVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANF 53
|
| >d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain V species: Desulfovibrio africanus [TaxId: 873]
Score = 36.8 bits (84), Expect = 0.001
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 50 ISEELCIGCGICVKKCPFEAIQIINLPKD 78
I+ C+GCG C CP + ++ P D
Sbjct: 72 INTLDCMGCGNCADICPPKEKALVMQPLD 100
|
| >d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: NADH-quinone oxidoreductase chain 9, Nqo9 species: Thermus thermophilus [TaxId: 274]
Score = 41.8 bits (97), Expect = 4e-05
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 14 DRC-KPKKCRQECKKSCPVVKTGKLCIEVTPAA-----KIAFISEELCIGCGICVKKCPF 67
++C C C V+ + E +A K+ I+ CI CG+C + CP
Sbjct: 26 EKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPT 85
Query: 68 EAIQIIN 74
AI +
Sbjct: 86 GAIVLGY 92
|
| >d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: NADH-quinone oxidoreductase chain 9, Nqo9 species: Thermus thermophilus [TaxId: 274]
Score = 38.3 bits (88), Expect = 7e-04
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 43 PAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDT 83
E CIGC +C CP AI + D +
Sbjct: 16 HVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPAENDPENPV 56
|
| >d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]} Length = 80 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Chromatium vinosum [TaxId: 1049]
Score = 39.3 bits (91), Expect = 7e-05
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 48 AFISEELCIGCGICVKKCPFEAIQIINLPKDLDKD 82
A + + CI C +C +CP AI + ++
Sbjct: 1 ALMITDECINCDVCEPECPNGAISQGDETYVIEPS 35
|
| >d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]} Length = 80 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Chromatium vinosum [TaxId: 1049]
Score = 37.4 bits (86), Expect = 4e-04
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 18/86 (20%)
Query: 9 AIVSSDRCKP-KKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGC------GIC 61
A++ +D C C EC IE LC C C
Sbjct: 1 ALMITDECINCDVCEPECPNGAISQGDETYVIE-----------PSLCTECVGHYETSQC 49
Query: 62 VKKCPFEAIQIINLPKDLDKDTTHRY 87
V+ CP + I ++ + + +Y
Sbjct: 50 VEVCPVDCIIKDPSHEETEDELRAKY 75
|
| >d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} Length = 64 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin I species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]
Score = 37.8 bits (87), Expect = 2e-04
Identities = 9/67 (13%), Positives = 15/67 (22%), Gaps = 6/67 (8%)
Query: 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCP 66
R V D C C+ + A + + + CP
Sbjct: 2 RKFYVDQDEC------IACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCP 55
Query: 67 FEAIQII 73
+ I
Sbjct: 56 VQCIHWE 62
|
| >d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} Length = 64 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin I species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]
Score = 34.4 bits (78), Expect = 0.003
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 45 AKIAFISEELCIGCGICVKKCPFEAIQIINLPK 77
A+ ++ ++ CI C CV+ P + K
Sbjct: 1 ARKFYVDQDECIACESCVEIAPGAFAMDPEIEK 33
|
| >d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]} Length = 106 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: 7-Fe ferredoxin domain: Ferredoxin species: Azotobacter vinelandii [TaxId: 354]
Score = 38.1 bits (88), Expect = 4e-04
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF 67
A V +D C KC+ +C + CPV I + CI C +C +CP
Sbjct: 1 AFVVTDNCI--KCKYTDCVEVCPV-------DCFYEGPNFLVIHPDECIDCALCEPECPA 51
Query: 68 EAIQI 72
+AI
Sbjct: 52 QAIFS 56
|
| >d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 149 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Adenylylsulfate reductase B subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 38.7 bits (89), Expect = 4e-04
Identities = 26/146 (17%), Positives = 41/146 (28%), Gaps = 11/146 (7%)
Query: 11 VSSDRCK--PKKCRQECKKSCPVVKTGKLCIEVTP-AAKIAFISEELCIGCGICVKKCPF 67
V+ ++C R C+ CP + + K ++C C CVK CP
Sbjct: 4 VNPEKCDGCKALERTACEYICPND-----LMTLDKEKMKAYNREPDMCWECYSCVKMCPQ 58
Query: 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRP-GQVLGLVGTNGIGKSTALKILAGK 126
AI + D V G+VL +++ G
Sbjct: 59 GAID-VRGYVDYSPLGGACVPMRGTSDIMWTVKYRNGKVLRFKFAIRTTPWGSIQPFEGF 117
Query: 127 LKPNLGRFNNPPDWQEILTYFRGSEL 152
+P + E SE
Sbjct: 118 PEPTEEALKSELLAGEP-EIIGTSEF 142
|
| >d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 149 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Adenylylsulfate reductase B subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 36.8 bits (84), Expect = 0.002
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 49 FISEELCIGCG-----ICVKKCPFEAIQI 72
F++ E C GC C CP + + +
Sbjct: 3 FVNPEKCDGCKALERTACEYICPNDLMTL 31
|
| >d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} Length = 83 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Fe-only hydrogenase, second domain species: Clostridium pasteurianum [TaxId: 1501]
Score = 37.1 bits (85), Expect = 4e-04
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 10/69 (14%)
Query: 10 IVSSDRCKPKKCRQECKKSCPVVK-------TGKLCIEVTPAAKIAFISEELCIGCGICV 62
V +C C + C +C K + A + C+ CG C+
Sbjct: 15 TVDRTKCL--LCGR-CVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCI 71
Query: 63 KKCPFEAIQ 71
CP A+
Sbjct: 72 IACPVAALS 80
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 39.9 bits (92), Expect = 6e-04
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 4/105 (3%)
Query: 377 IVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ 436
+++ G+ GTGK+T +R LA LL VE + + +
Sbjct: 31 VLVFGDRGTGKSTAVRALAALLPEIEA----VEGCPVSSPNVEMIPDWATVLSTNVIRKP 86
Query: 437 KIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481
V+ L IE+ + + G L R
Sbjct: 87 TPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYL 131
|
| >d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} Length = 58 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin I species: Desulfovibrio gigas [TaxId: 879]
Score = 36.1 bits (83), Expect = 6e-04
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 8/52 (15%)
Query: 19 KKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAI 70
+ C + C + + G + + + CP EAI
Sbjct: 12 EACVEICPDVFEMNEEGD--------KAVVINPDSDLDCVEEAIDSCPAEAI 55
|
| >d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} Length = 58 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin I species: Desulfovibrio gigas [TaxId: 879]
Score = 33.8 bits (77), Expect = 0.003
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 52 EELCIGCGICVKKCPFEAIQIIN 74
+ C+ C CV+ CP
Sbjct: 5 NDDCMACEACVEICPDVFEMNEE 27
|
| >d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]} Length = 66 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Fe3S4-ferredoxin PF1909 species: Pyrococcus furiosus [TaxId: 2261]
Score = 36.3 bits (83), Expect = 6e-04
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 11 VSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAI 70
VS D+ C CP V + P ++ EEL ++ CP AI
Sbjct: 4 VSVDQDTCIGDAI-CASLCPDVFEMNDEGKAQPKVEVI-EDEELYNCAKEAMEACPVSAI 61
Query: 71 QI 72
I
Sbjct: 62 TI 63
|
| >d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]} Length = 66 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Fe3S4-ferredoxin PF1909 species: Pyrococcus furiosus [TaxId: 2261]
Score = 35.5 bits (81), Expect = 0.001
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 50 ISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTT 84
+ ++ CIG IC CP +
Sbjct: 6 VDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVI 40
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 37.7 bits (86), Expect = 0.001
Identities = 16/108 (14%), Positives = 35/108 (32%)
Query: 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHL 433
++ ++ G G GK+T + LA L + + D+ Y+P S + +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKN 61
Query: 434 LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481
+ + V E + V +++ + L
Sbjct: 62 ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILW 109
|
| >d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]} Length = 59 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin A species: Thermotoga maritima [TaxId: 2336]
Score = 35.2 bits (80), Expect = 0.001
Identities = 13/63 (20%), Positives = 16/63 (25%), Gaps = 8/63 (12%)
Query: 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEA 69
V +D C C C+ CP V E CP A
Sbjct: 4 RVDADACI--GCGV-CENLCPDV-----FQLGDDGKAKVLQPETDLPCAKDAADSCPTGA 55
Query: 70 IQI 72
I +
Sbjct: 56 ISV 58
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.001
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSV 403
++ + + G G GKTT I + +LK V
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGV 30
|
| >d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]} Length = 80 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Thauera aromatica [TaxId: 59405]
Score = 35.2 bits (80), Expect = 0.002
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 48 AFISEELCIGCGICVKKCPFEAIQIINLPKDLDKD 82
A + C C CV++CP EAI + +D
Sbjct: 1 ALYINDDCTACDACVEECPNEAITPGDPIYVIDPT 35
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (87), Expect = 0.002
Identities = 16/126 (12%), Positives = 39/126 (30%), Gaps = 7/126 (5%)
Query: 150 SELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQV 209
L + + ++ + + + D+ +K L +
Sbjct: 277 DHLDAIYRELTKNPNSNVELAGGNASL-------TIEDEDEPFNAGIKYHATPPLKRFKD 329
Query: 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269
++ G A+ + Q + ++ DE + LD+ + A +R P+
Sbjct: 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQF 389
Query: 270 IVVEHD 275
IV+
Sbjct: 390 IVISLK 395
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 605 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.82 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.81 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.58 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.46 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.24 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.23 | |
| d1hfel2 | 85 | Fe-only hydrogenase larger subunit, N-domain {Desu | 98.94 | |
| d1dura_ | 55 | Ferredoxin II {Peptostreptococcus asaccharolyticus | 98.91 | |
| d2fdna_ | 55 | Ferredoxin II {Clostridium acidurici [TaxId: 1556] | 98.83 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.82 | |
| d1gtea5 | 173 | Dihydropyrimidine dehydrogenase, C-terminal domain | 98.81 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.8 | |
| d1bc6a_ | 77 | Ferredoxin {Bacillus schlegelii [TaxId: 1484]} | 98.77 | |
| d1h98a_ | 77 | Ferredoxin {Thermus thermophilus [TaxId: 274]} | 98.72 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.69 | |
| d1jnrb_ | 149 | Adenylylsulfate reductase B subunit {Archaeon Arch | 98.67 | |
| d1blua_ | 80 | Ferredoxin II {Chromatium vinosum [TaxId: 1049]} | 98.63 | |
| d7fd1a_ | 106 | Ferredoxin {Azotobacter vinelandii [TaxId: 354]} | 98.63 | |
| d3c7bb1 | 65 | DsrB insert domain {Archaeoglobus fulgidus [TaxId: | 98.56 | |
| d1jb0c_ | 80 | Photosystem I iron-sulfur protein PsaC {Synechococ | 98.41 | |
| d1xera_ | 103 | Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} | 98.4 | |
| d1vjwa_ | 59 | Ferredoxin A {Thermotoga maritima [TaxId: 2336]} | 98.35 | |
| d1iqza_ | 81 | Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1 | 98.29 | |
| d1rgva_ | 80 | Ferredoxin II {Thauera aromatica [TaxId: 59405]} | 98.27 | |
| d1fxra_ | 64 | Ferredoxin I {Sulfate-reducing bacteria (Desulfovi | 98.23 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.21 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.18 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.08 | |
| d1sj1a_ | 66 | Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI | 98.08 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.07 | |
| d3c8ya3 | 83 | Fe-only hydrogenase, second domain {Clostridium pa | 98.04 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.97 | |
| d1kqfb1 | 244 | Formate dehydrogenase N, iron-sulfur (beta) subuni | 97.96 | |
| d2c42a5 | 117 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain V | 97.81 | |
| d2fug91 | 154 | NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus | 97.81 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.79 | |
| d1y5ib1 | 509 | Respiratory nitrate reductase 1 beta chain {Escher | 97.69 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.66 | |
| d1blua_ | 80 | Ferredoxin II {Chromatium vinosum [TaxId: 1049]} | 97.55 | |
| d2fdna_ | 55 | Ferredoxin II {Clostridium acidurici [TaxId: 1556] | 97.49 | |
| d1vlfn2 | 195 | Transhydroxylase beta subunit, BthL, N-terminal do | 97.34 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.31 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.29 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.28 | |
| d1rgva_ | 80 | Ferredoxin II {Thauera aromatica [TaxId: 59405]} | 97.22 | |
| d1xera_ | 103 | Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} | 97.19 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.07 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.04 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.98 | |
| d1dura_ | 55 | Ferredoxin II {Peptostreptococcus asaccharolyticus | 96.98 | |
| d1jb0c_ | 80 | Photosystem I iron-sulfur protein PsaC {Synechococ | 96.97 | |
| d1hfel2 | 85 | Fe-only hydrogenase larger subunit, N-domain {Desu | 96.97 | |
| d1h98a_ | 77 | Ferredoxin {Thermus thermophilus [TaxId: 274]} | 96.91 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.9 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.88 | |
| d1fxra_ | 64 | Ferredoxin I {Sulfate-reducing bacteria (Desulfovi | 96.82 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.8 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.8 | |
| d1bc6a_ | 77 | Ferredoxin {Bacillus schlegelii [TaxId: 1484]} | 96.78 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.74 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.73 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.69 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.67 | |
| d1fxda_ | 58 | Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} | 96.63 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.63 | |
| d1jnrb_ | 149 | Adenylylsulfate reductase B subunit {Archaeon Arch | 96.61 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.61 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.58 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.58 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.57 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.57 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.49 | |
| d2c42a5 | 117 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain V | 96.49 | |
| d1h0hb_ | 214 | Tungsten containing formate dehydrogenase, small s | 96.47 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.46 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.45 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.4 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.39 | |
| d1gtea5 | 173 | Dihydropyrimidine dehydrogenase, C-terminal domain | 96.36 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.36 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.36 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.34 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.33 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.31 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.28 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.24 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.22 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.22 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.22 | |
| d2fug91 | 154 | NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus | 96.21 | |
| d3c8ya3 | 83 | Fe-only hydrogenase, second domain {Clostridium pa | 96.2 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.19 | |
| d1vjwa_ | 59 | Ferredoxin A {Thermotoga maritima [TaxId: 2336]} | 96.19 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.19 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.16 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.13 | |
| d1y5ib1 | 509 | Respiratory nitrate reductase 1 beta chain {Escher | 96.1 | |
| d1fxda_ | 58 | Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} | 96.1 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.1 | |
| d1vlfn2 | 195 | Transhydroxylase beta subunit, BthL, N-terminal do | 96.08 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.08 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.06 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.06 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.05 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.05 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.04 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.04 | |
| d7fd1a_ | 106 | Ferredoxin {Azotobacter vinelandii [TaxId: 354]} | 96.04 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.98 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.93 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.93 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.86 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.85 | |
| d2fug34 | 151 | NADH-quinone oxidoreductase chain 3, Nqo3, domain | 95.84 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.83 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.83 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.81 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.79 | |
| d1iqza_ | 81 | Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1 | 95.78 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.77 | |
| d1sj1a_ | 66 | Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI | 95.72 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.69 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.68 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.67 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.66 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.65 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.58 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.56 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.53 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.45 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.44 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.42 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.4 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.37 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.35 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.35 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.34 | |
| d1kqfb1 | 244 | Formate dehydrogenase N, iron-sulfur (beta) subuni | 95.33 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.32 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.31 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.3 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.3 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.29 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.29 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.27 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.27 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.25 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.25 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.25 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.21 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.21 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.19 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.19 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.19 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.18 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.17 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.17 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.15 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.14 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.14 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.13 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.13 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.13 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.08 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.06 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.05 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.04 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.04 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.03 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.03 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.03 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.02 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.01 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.99 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.98 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.97 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.97 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.96 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.96 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.93 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.91 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.9 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.89 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.89 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.86 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.84 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.81 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.79 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.76 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.76 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.75 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.75 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.73 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.72 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.71 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.68 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.63 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.62 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.61 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.61 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.6 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.59 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.58 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.58 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.56 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.53 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.53 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.44 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.44 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.42 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.41 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.39 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.36 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.36 | |
| d2gmha3 | 102 | Electron transfer flavoprotein-ubiquinone oxidored | 94.35 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.35 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.33 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.32 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.31 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.29 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.29 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.28 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.26 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.26 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.24 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.23 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.13 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.13 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.11 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.11 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.05 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.02 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.99 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.98 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.97 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.97 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.96 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.96 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.93 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.93 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.9 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.89 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.81 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.8 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.78 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.74 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.68 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.61 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.6 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.56 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.49 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.48 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.42 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.41 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.39 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.39 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.39 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.36 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.33 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.31 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.29 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.24 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.23 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.19 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.17 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.17 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.16 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.15 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.11 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.07 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.05 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.05 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.98 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.97 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.97 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.96 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.93 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.89 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.89 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.88 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.81 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.8 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.77 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.73 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.67 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.67 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.65 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.6 | |
| d1h0hb_ | 214 | Tungsten containing formate dehydrogenase, small s | 92.54 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.47 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.46 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.45 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.41 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.35 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.32 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 92.31 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.3 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.29 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.26 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.24 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.23 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.22 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.21 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.21 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.21 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.19 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.16 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.16 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.14 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.11 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.06 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.06 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.05 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.05 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.05 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.01 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.01 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.99 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.97 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.91 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.89 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.87 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.82 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.78 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.78 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.75 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.72 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.7 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.67 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.67 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.67 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.66 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.65 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.65 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.62 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.59 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.58 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.58 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.57 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.52 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.51 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.5 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.49 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.44 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.43 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.43 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.41 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.39 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.37 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.35 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.23 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.21 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.07 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.07 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.0 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.98 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.98 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.97 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.87 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.8 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.73 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.72 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.7 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.6 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 90.58 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.53 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.45 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.38 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.33 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.33 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.33 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.32 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.32 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 90.31 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.29 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.24 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.19 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.12 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.08 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.08 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.07 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.02 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.99 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.97 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 89.97 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.93 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.91 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.89 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.87 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.87 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 89.74 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.74 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.69 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.68 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.66 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.66 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.65 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.64 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.63 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.52 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.52 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.52 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.43 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.42 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.37 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.35 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.34 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.3 | |
| d3c7bb1 | 65 | DsrB insert domain {Archaeoglobus fulgidus [TaxId: | 89.29 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.26 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.23 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.09 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.09 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.06 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.06 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.01 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.94 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.81 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.73 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.71 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.46 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.36 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.32 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.22 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 88.22 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.09 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.73 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.69 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 87.68 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.5 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.37 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.92 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.62 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.54 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.31 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 86.03 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.91 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 85.67 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.67 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.62 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 85.6 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.15 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.11 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.03 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 84.85 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 84.58 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.46 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 84.37 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.26 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 83.84 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.56 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 82.75 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 82.58 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 82.39 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 82.08 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 81.79 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 81.78 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2e-47 Score=378.38 Aligned_cols=204 Identities=27% Similarity=0.362 Sum_probs=172.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. .++++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.++ ...+|||+||+
T Consensus 13 sk~yg~~-~al~~vsl~v~~G-----e~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 86 (239)
T d1v43a3 13 TKRFGNF-TAVNKLNLTIKDG-----EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 86 (239)
T ss_dssp EEEETTE-EEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEECCE-EEEcceeEEECCC-----CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeec
Confidence 7888764 5799999999998 68999999999999999999999999999986 2222 23469999999
Q ss_pred CCCCCcCcHHHHHHhhhccCCCC----HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDSYTH----PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||++++.........+ ...+.++++.++|++..++++.+|||||||||+|||||+.+|+||||||||++
T Consensus 87 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~ 166 (239)
T d1v43a3 87 YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 166 (239)
T ss_dssp -----CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred hhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCccc
Confidence 87666789999886432211112 24577899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+.++..++++|+++.++.|.|+|+||||++++.++||||++|..+.. ...|+|+++++.
T Consensus 167 LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~i--v~~G~~~el~~~ 227 (239)
T d1v43a3 167 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL--LQIGSPTEVYLR 227 (239)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999999877799999999999999999999999996554 567999999865
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.8e-47 Score=374.07 Aligned_cols=203 Identities=30% Similarity=0.430 Sum_probs=177.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~ 421 (605)
+++|++. +++++||++.+| |+++|+||||||||||+|+|+|+++|++|+|. +.++. +.++||+||+
T Consensus 8 sk~y~~~--aL~~vs~~i~~G-----e~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~ 80 (229)
T d3d31a2 8 SRKWKNF--SLDNLSLKVESG-----EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (229)
T ss_dssp EEECSSC--EEEEEEEEECTT-----CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEeCCE--EEeeeEEEECCC-----CEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccc
Confidence 7888763 689999999888 78999999999999999999999999999986 22222 2369999999
Q ss_pred CCCCCcCcHHHHHHhhhc-cCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 422 ISPKFQSTVRHLLHQKIR-DSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
......+||++++..... ........+.++++.+++.+++++++.+|||||||||+|||||+++|++|||||||++||+
T Consensus 81 ~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~ 160 (229)
T d3d31a2 81 YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (229)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred cccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCH
Confidence 877667899998754321 2234567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.++.+++++|+++.++.|.|||+||||++++..+||||++|+++.. ...|+|++++..
T Consensus 161 ~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~i--v~~g~~~el~~~ 218 (229)
T d3d31a2 161 RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL--IQVGKPEEIFEK 218 (229)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCE--EEEECHHHHHSS
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999877899999999999999999999999986544 467999999764
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-47 Score=378.25 Aligned_cols=204 Identities=26% Similarity=0.352 Sum_probs=145.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. .+++++||++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ .+.+|||+||+
T Consensus 7 ~k~yg~~-~~l~~isl~i~~G-----ei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 7 TKAWGEV-VVSKDINLDIHEG-----EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEETTE-EEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred EEEECCE-EEEeeeEEEEcCC-----CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccc
Confidence 7888764 4799999999988 78999999999999999999999999999986 2222 13469999999
Q ss_pred CCCCCcCcHHHHHHhhhccC-C---CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-Y---THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~---~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
+.....+||++++....... . ...+.+.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||++
T Consensus 81 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~ 160 (232)
T d2awna2 81 YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 160 (232)
T ss_dssp CCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTT
T ss_pred cccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 87777889999875432111 1 1235688999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+.++..+++.|+++.++.|+|+|+||||++++..+||||++|+++.. ...|+|++++..
T Consensus 161 LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~i--v~~G~~~el~~~ 221 (232)
T d2awna2 161 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV--AQVGKPLELYHY 221 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEeCHHHHHhC
Confidence 9999999999999999888899999999999999999999999997553 567999999865
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=9.8e-47 Score=373.94 Aligned_cols=204 Identities=25% Similarity=0.351 Sum_probs=176.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----------Cccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----------PEFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----------~~~~i 415 (605)
+++|++. .++++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ .+.+|
T Consensus 10 ~k~yg~~-~al~~vsl~i~~G-----e~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~i 83 (240)
T d1g2912 10 WKVFGEV-TAVREMSLEVKDG-----EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83 (240)
T ss_dssp EEEETTE-EEEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EEEECCE-EEEcceeeEEcCC-----CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccc
Confidence 7888764 5799999999988 78999999999999999999999999999985 2111 12469
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|+||++.....+||.+++....... .. ....+.++++.+++++..+++|.+|||||||||+|||||+++|++|||
T Consensus 84 g~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLll 163 (240)
T d1g2912 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLM 163 (240)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred eecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 99999987766789999875432211 11 124578899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||+|||+.++..++++|+++.++.|.|||+||||++++..+||||++|+++.. ...|+|+++++.
T Consensus 164 DEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~i--v~~G~~~el~~~ 230 (240)
T d1g2912 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL--QQVGSPDEVYDK 230 (240)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred cCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999999999999877799999999999999999999999997554 466999999865
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.2e-46 Score=373.10 Aligned_cols=205 Identities=28% Similarity=0.307 Sum_probs=176.2
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc--------cC--ccee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE--------IP--EFNV 415 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~--------~~--~~~i 415 (605)
+++|++. ..++++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.. .. +.+|
T Consensus 10 sk~y~~g~~~aL~~vsl~i~~G-----e~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~i 84 (242)
T d1oxxk2 10 SKVFKKGKVVALDNVNINIENG-----ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI 84 (242)
T ss_dssp EEEEGGGTEEEEEEEEEEECTT-----CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCE
T ss_pred EEEECCCCEEEEeceEEEECCC-----CEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccc
Confidence 7778543 35789999999998 78999999999999999999999999999985 211 11 2369
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCCCC----HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTH----PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
||+||+......+||++++.......... ...+.++++.++|++.++++|.+|||||||||+|||||+++|++|||
T Consensus 85 g~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llll 164 (242)
T d1oxxk2 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLL 164 (242)
T ss_dssp EEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred eEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceee
Confidence 99999987666789999986543321112 24578999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||++||+.++..++++|+++.++.|.|+|+||||++++..+||||++|+.+.. ...|+|+++++.
T Consensus 165 DEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~i--v~~g~~~el~~~ 231 (242)
T d1oxxk2 165 DEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL--VQVGKPEDLYDN 231 (242)
T ss_dssp ESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred cCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999999999999777799999999999999999999999996543 567999999865
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-46 Score=372.28 Aligned_cols=205 Identities=20% Similarity=0.252 Sum_probs=174.6
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cc
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EF 413 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~ 413 (605)
+++|+.. ..++++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. +.
T Consensus 8 sk~y~~~~~~~~al~~vsl~i~~G-----e~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr 82 (240)
T d3dhwc1 8 TKVFHQGTRTIQALNNVSLHVPAG-----QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR 82 (240)
T ss_dssp EEEEECSSCEEEEEEEEEEEECSS-----CEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHH
T ss_pred EEEeCCCCeeEEEeeceeEEEcCC-----CEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhc
Confidence 5566543 24689999999988 78999999999999999999999999999986 22221 12
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhc--cCCCC--HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIR--DSYTH--PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIY 489 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~--~~~~~--~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ll 489 (605)
++||+||+......+||.+++..... ..... ...+.++++.+||++.+++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lL 162 (240)
T d3dhwc1 83 QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVL 162 (240)
T ss_dssp HEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEE
T ss_pred cccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeE
Confidence 59999999876667899998754322 11111 356789999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 490 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||||++||+.++..++++|+++.++.|.|||+||||++++..+||||++|+++.. ...|+|+++++.
T Consensus 163 llDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~i--v~~G~~~ei~~~ 231 (240)
T d3dhwc1 163 LCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL--IEQDTVSEVFSH 231 (240)
T ss_dssp EEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEE--EEEEETTTTTCS
T ss_pred EeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999999999877799999999999999999999999997554 467999998864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=8.4e-46 Score=366.17 Aligned_cols=188 Identities=28% Similarity=0.365 Sum_probs=162.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCcCCCCCcCcHHHHHHhhhccCC--CCH
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSY--THP 445 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~--~~~ 445 (605)
|+++|+||||||||||+|+|+|+++|++|++. +.++ .+.+|||+||+......+||+|++....+... ...
T Consensus 25 e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~ 104 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD 104 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred EEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHHHHH
Confidence 68999999999999999999999999999986 2222 23469999999876667899999865432211 113
Q ss_pred HHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 040300 446 QFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525 (605)
Q Consensus 446 ~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvs 525 (605)
+.+.++++.++|++++++++.+|||||||||+|||||+++|++|||||||+|||+.++..+++.|+++.++.|.|+|+||
T Consensus 105 ~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vt 184 (240)
T d2onka1 105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184 (240)
T ss_dssp HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 56889999999999999999999999999999999999999999999999999999999999999999877799999999
Q ss_pred cCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccccc
Q 040300 526 HDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF 564 (605)
Q Consensus 526 HD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~ 564 (605)
||++++.++||||++|+.+.. ...|+|+++++..|.+
T Consensus 185 Hd~~~~~~~adri~vm~~G~i--i~~G~~~el~~~~~~~ 221 (240)
T d2onka1 185 HDLIEAAMLADEVAVMLNGRI--VEKGKLKELFSAKNGE 221 (240)
T ss_dssp SCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHSCCSS
T ss_pred CCHHHHHHhCCEEEEEECCEE--EEEecHHHHhcCCCHH
Confidence 999999999999999986543 4679999998765543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.6e-45 Score=358.85 Aligned_cols=192 Identities=23% Similarity=0.328 Sum_probs=160.9
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------c
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------E 412 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~ 412 (605)
+++|+.. ..++++++|++.+| |++||+||||||||||+++|+|+++|++|+|. +.++. .
T Consensus 8 sk~y~~~~~~~~al~~isl~i~~G-----e~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~ 82 (230)
T d1l2ta_ 8 TKTYKMGEEIIYALKNVNLNIKEG-----EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82 (230)
T ss_dssp EEEEEETTEEEEEEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEeCCCCeeEEEEeceEEEEcCC-----CEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhc
Confidence 6666532 23689999999888 78999999999999999999999999999986 22221 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhc--c--CCCC---HHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHHHcc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIR--D--SYTH---PQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~--~--~~~~---~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
.+|||++|++...+.+||.+++..... . .... ...+.++++.+++.+ +++++|.+|||||||||+|||||++
T Consensus 83 ~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~ 162 (230)
T d1l2ta_ 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN 162 (230)
T ss_dssp HHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred ceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhc
Confidence 249999999877778899998754221 1 1111 245677889999975 6899999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
+|+||||||||++||+.++..++++|+++.++.|.|+|+||||++++ .+||||++|+.+..
T Consensus 163 ~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~I 223 (230)
T d1l2ta_ 163 NPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEV 223 (230)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEE
T ss_pred CCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999999887899999999999988 68999999986543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.1e-44 Score=358.87 Aligned_cols=204 Identities=23% Similarity=0.256 Sum_probs=171.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++. .+++++||++.+| |++||+||||||||||+|+|+|+++|++|++. +.++. +..++|+
T Consensus 13 ~k~yg~~-~al~~vs~~i~~G-----ei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~ 86 (240)
T d1ji0a_ 13 HVYYGAI-HAIKGIDLKVPRG-----QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEETTE-EEEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EEEECCE-EEEeeeeEEECCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhccccc
Confidence 7888764 5799999999998 78999999999999999999999999999986 33221 2248999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCC-C--HHHHHHHHhhc-CCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYT-H--PQFVSDVMKPL-LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~-~--~~~~~~~l~~l-~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
||+......+||++++......... . .....++++.+ ++.+..++++.+|||||||||+|||||+++|++||||||
T Consensus 87 ~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEP 166 (240)
T d1ji0a_ 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred CcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCC
Confidence 9998776678999987543322111 1 23345566666 688899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|+|||+.++.+++++|+++.+ .|.|||+||||++++..+||||++|+.+.. .+.|+|+++++..
T Consensus 167 t~gLD~~~~~~i~~~i~~l~~-~g~til~~tH~l~~~~~~~drv~vl~~G~i--v~~g~~~el~~~~ 230 (240)
T d1ji0a_ 167 SLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQI--VLEGKASELLDNE 230 (240)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEE--EEEEEHHHHHTCH
T ss_pred CcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHhcCH
Confidence 999999999999999999865 599999999999999999999999996543 5679999998753
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.3e-44 Score=361.92 Aligned_cols=203 Identities=22% Similarity=0.292 Sum_probs=172.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------------- 411 (605)
+++|++ ..++++++|++.+| |++||+||||||||||+++|+|+++|++|+|. +..+.
T Consensus 9 ~k~yg~-~~al~~vs~~i~~G-----Ei~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~ 82 (258)
T d1b0ua_ 9 HKRYGG-HEVLKGVSLQARAG-----DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 82 (258)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHH
T ss_pred EEEECC-EEEEcceeeEEcCC-----CEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHh
Confidence 778876 45799999999988 78999999999999999999999999999985 22211
Q ss_pred -----cceeEeecCcCCCCCcCcHHHHHHhhh-cc-CCC---CHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHH
Q 040300 412 -----EFNVSYKPQKISPKFQSTVRHLLHQKI-RD-SYT---HPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCL 480 (605)
Q Consensus 412 -----~~~i~y~~q~~~~~~~~tv~~~~~~~~-~~-~~~---~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~ 480 (605)
..+++|+||++.....+||.+++.... .. ... ....+.++++.+++.+ ..+++|.+|||||||||+|||
T Consensus 83 ~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAr 162 (258)
T d1b0ua_ 83 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 162 (258)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHH
Confidence 135999999987767789999865321 11 111 1245778999999986 568899999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 481 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+.+|++|||||||+|||+.++.+++++|+++.+ .|.|||+||||++++..+||||+||..+.. ...|+|+++++.
T Consensus 163 aL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vtHdl~~~~~~adri~vm~~G~i--v~~g~~~ev~~~ 239 (258)
T d1b0ua_ 163 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKI--EEEGDPEQVFGN 239 (258)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred HHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cCCceEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 99999999999999999999999999999999865 599999999999999999999999997554 477999999875
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1e-43 Score=353.24 Aligned_cols=203 Identities=20% Similarity=0.275 Sum_probs=173.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++ .+++++++|++.+| |++||+||||||||||+++|+|+++|++|++. +.++. +..++|+||
T Consensus 9 ~k~yg~-~~vl~~vs~~v~~G-----ei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq 82 (238)
T d1vpla_ 9 RKRIGK-KEILKGISFEIEEG-----EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 82 (238)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EEEECC-EEEEccceeEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeee
Confidence 778876 45799999999998 68999999999999999999999999999985 32221 235999999
Q ss_pred cCCCCCcCcHHHHHHhh--hccCCC--CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQK--IRDSYT--HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~--~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
.......+|+.+++... ...... ....++.+++.+++.+..++++.+|||||||||+|||||+++|++|||||||+
T Consensus 83 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~ 162 (238)
T d1vpla_ 83 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 162 (238)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred ccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 98777778999987432 111111 12356778899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+.++..++++|+++.+ .|+|||++|||++++..+||||++|+++.. .+.|+|++++..
T Consensus 163 gLD~~~~~~i~~~i~~~~~-~g~tii~~tH~l~~~~~~~drv~vl~~G~i--v~~g~~~el~~~ 223 (238)
T d1vpla_ 163 GLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTI--VETGTVEELKER 223 (238)
T ss_dssp TCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEE--EEEEEHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhc
Confidence 9999999999999999865 599999999999999999999999997543 467999999764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.6e-44 Score=358.11 Aligned_cols=202 Identities=19% Similarity=0.239 Sum_probs=170.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++. .+++++||++.+| |++||+||||||||||+|+|+|+++|++|+|. +.++. ...|+|+
T Consensus 11 sk~yg~~-~aL~~vs~~v~~G-----ei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v 84 (254)
T d1g6ha_ 11 VKYFGEF-KALDGVSISVNKG-----DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRT 84 (254)
T ss_dssp EEEETTE-EEEEEECCEEETT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred EEEECCe-EEEcceEEEECCC-----CEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCcc
Confidence 7788764 5799999999888 78999999999999999999999999999986 22221 2249999
Q ss_pred cCcCCCCCcCcHHHHHHhhhc-------------cC-CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHH
Q 040300 419 PQKISPKFQSTVRHLLHQKIR-------------DS-YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~-------------~~-~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~a 481 (605)
||++.....+||.+++..... .. ... ...+.++++.+++.+..++++.+|||||||||+||||
T Consensus 85 ~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAra 164 (254)
T d1g6ha_ 85 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRA 164 (254)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred CCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHH
Confidence 999877778899998753210 01 111 1356778999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|+++|++|||||||+|||+.++..++++|+++. +.|.|||+||||++++..+||||+||..+.. .+.|+|+++..
T Consensus 165 L~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~-~~g~til~vsHdl~~~~~~~Drv~vm~~G~i--v~~g~~~e~~~ 239 (254)
T d1g6ha_ 165 LMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK-AKGITFLIIEHRLDIVLNYIDHLYVMFNGQI--IAEGRGEEEIK 239 (254)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECSCCSTTGGGCSEEEEEETTEE--EEEEESHHHHH
T ss_pred HHhCcCchhhcCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcHHHHHHhCCEEEEEeCCEE--EEEecHHHHhh
Confidence 999999999999999999999999999999985 4699999999999999999999999986543 46688887654
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.6e-43 Score=347.70 Aligned_cols=201 Identities=25% Similarity=0.365 Sum_probs=152.5
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
..|++.||. ++||.. ..|++++ .+.+||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 5 ~~I~v~nls--------k~yg~~-~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~----------- 64 (239)
T d1v43a3 5 VEVKLENLT--------KRFGNF-TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY----------- 64 (239)
T ss_dssp CCEEEEEEE--------EEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-----------
T ss_pred CeEEEEEEE--------EEECCE-EEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE-----------
Confidence 468888754 577653 3466666 4589999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhhh-----hcCchHHHHHHHHHHhhcCCchhhcccCCCCChH
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVGQ-----VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG 220 (605)
+.|.++...... ..+..+.+|.....|.. +..++.. -+.+...++++.++++.+||++.+++++.+||||
T Consensus 65 i~g~~i~~~~~~----~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG 140 (239)
T d1v43a3 65 FGDRDVTYLPPK----DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGG 140 (239)
T ss_dssp ETTEECTTSCGG----GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSS
T ss_pred EcceecccCCcc----cceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHH
Confidence 222222111000 01122233332222211 1111111 1234456788999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 221 e~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||+|||||+.+|+||||||||++||+..+..++++|+++.++ |+|||+||||++++.++||||++|+.+
T Consensus 141 q~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G 213 (239)
T d1v43a3 141 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRG 213 (239)
T ss_dssp CHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999765 999999999999999999999999743
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.7e-43 Score=345.85 Aligned_cols=205 Identities=22% Similarity=0.340 Sum_probs=158.4
Q ss_pred eEEEecCCcccCCCceEEeCCC--c-eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN--T-FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~--~-f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
+|+|.||. +.|+.+ . -.|++++ .+++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 1 mi~v~nls--------k~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~--------- 63 (240)
T d3dhwc1 1 MIKLSNIT--------KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL--------- 63 (240)
T ss_dssp CEEEEEEE--------EEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEE---------
T ss_pred CEEEEeEE--------EEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceE---------
Confidence 36677655 456443 2 2466666 4689999999999999999999999999999999985
Q ss_pred hhhccchhhhhHHHHHHH-HHHHhhcccccccchh-hhhchhhh-----hcCchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 145 TYFRGSELQNYFTRILED-NLKAIIKPQYVDHIPK-AVQGNVGQ-----VLDQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~-~~~~~~~~q~~~~~~~-~~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
+.|.++.....+.... .-...+.+|....+|. .+.+++.. -+.+.+.++++.++++.+||++.+++++.+|
T Consensus 64 --~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~L 141 (240)
T d3dhwc1 64 --VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL 141 (240)
T ss_dssp --ETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCC
T ss_pred --EcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 3444443222111110 1123455565444443 22222221 1234456788999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||+|||||+.+|++|||||||++||+..+..++++|+++.++ |+|||+||||++++..+||||++|+.+
T Consensus 142 SGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G 217 (240)
T d3dhwc1 142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNG 217 (240)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETT
T ss_pred CHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999876 999999999999999999999999754
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4e-43 Score=345.24 Aligned_cols=197 Identities=27% Similarity=0.417 Sum_probs=154.3
Q ss_pred EEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhc
Q 040300 70 IQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFR 148 (605)
Q Consensus 70 i~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~ 148 (605)
|+|.|| +++||. +.|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. +.
T Consensus 2 i~v~nl--------sk~y~~--~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~-----------~~ 60 (229)
T d3d31a2 2 IEIESL--------SRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL-----------LD 60 (229)
T ss_dssp EEEEEE--------EEECSS--CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEE-----------ET
T ss_pred EEEEEE--------EEEeCC--EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEE-----------Ec
Confidence 566664 557764 4677766 4689999999999999999999999999999999985 44
Q ss_pred cchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhhhh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHH
Q 040300 149 GSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVGQV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRF 225 (605)
Q Consensus 149 g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRv 225 (605)
|.++.+.... .-..++.+|.....|.. +..++... +......+++.++++.++|.+++++++.+|||||||||
T Consensus 61 G~~i~~~~~~----~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRv 136 (229)
T d3d31a2 61 GKDVTDLSPE----KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRV 136 (229)
T ss_dssp TEECTTSCHH----HHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHH
T ss_pred cEeccccchh----HhcceeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcch
Confidence 4444332211 11234445544333331 22222110 11122346789999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+|||||+++|++|||||||++||+..+.+++++|+++.+ .|.|||+||||++++..+||||++|+.
T Consensus 137 aiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~ 203 (229)
T d3d31a2 137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMD 203 (229)
T ss_dssp HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESS
T ss_pred hhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999975 499999999999999999999999964
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-43 Score=347.05 Aligned_cols=195 Identities=24% Similarity=0.281 Sum_probs=125.6
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
|++|+||.. ..|++++ .+++||++||+||||||||||+|+|+|+++|++|+|.. .|.++.+....
T Consensus 5 nv~k~yg~~-~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i-----------~g~~i~~~~~~-- 70 (232)
T d2awna2 5 NVTKAWGEV-VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-----------GEKRMNDTPPA-- 70 (232)
T ss_dssp EEEEEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE-----------SSSCCTTSCGG--
T ss_pred EEEEEECCE-EEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEE-----------CCEECCCCchh--
Confidence 356678764 3466666 45899999999999999999999999999999999852 22222111000
Q ss_pred HHHHHHhhcccccccchhh-hhchhhh-----hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccC
Q 040300 161 EDNLKAIIKPQYVDHIPKA-VQGNVGQ-----VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQN 234 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~-~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~ 234 (605)
.....+.+|.....|.. +..++.. .+.+.+.++++.++++.++|.+..++++.+|||||||||+|||||+++
T Consensus 71 --~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~ 148 (232)
T d2awna2 71 --ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 148 (232)
T ss_dssp --GTCEEEECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTC
T ss_pred --hceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 00122333333222221 1111110 112344567899999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|++|||||||++||+.++.+++++|+++.+ .|+|||+||||++++..+||||++|+++
T Consensus 149 P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G 207 (232)
T d2awna2 149 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 207 (232)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999975 5999999999999999999999999753
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.8e-42 Score=343.99 Aligned_cols=210 Identities=18% Similarity=0.308 Sum_probs=167.2
Q ss_pred hhheeeecCCce--eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cc
Q 040300 345 ETYARYKYPTMV--KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EF 413 (605)
Q Consensus 345 ~~~~~~~y~~~~--~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~ 413 (605)
+++ +|+|++.. .++++++|++.+| |++||+||||||||||+++|+|+++|++|+|. +.++. +.
T Consensus 15 ~nv-sf~Y~~~~~~~vL~~isl~i~~G-----e~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 15 QDV-SFAYPNRPDVLVLQGLTFTLRPG-----EVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp EEE-EECCTTSTTCCSEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred EEE-EEECCCCCCCEeEeceEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHH
Confidence 344 89997632 3689999999998 68999999999999999999999999999985 22221 23
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHH--------HHHHHhhc--CCchhhccCcCcCChhHHHHHHHHHHHc
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQF--------VSDVMKPL--LIEQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~--------~~~~l~~l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
.++|++|++. .|..|+++++............. ..+.++.+ +++...++.+.+|||||||||+|||||+
T Consensus 89 ~i~~v~Q~~~-lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 89 QVAAVGQEPQ-VFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HEEEECSSCC-CCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred Hhhhcccccc-ccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence 5999999975 46789999986532221111111 11233333 4555667788999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL 563 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~ 563 (605)
++|+||||||||++||+.++..+++.|+++.++.++|+|+||||++.+. .||||++|+++.. ...|+|+++++....
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~i--v~~Gt~~eLl~~~~~ 244 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAI--REGGTHQQLMEKKGC 244 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEE--EEEECHHHHHHHTSH
T ss_pred cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEE--EEECCHHHHHhCCcH
Confidence 9999999999999999999999999999987666899999999999886 4999999997654 467999999876444
Q ss_pred c
Q 040300 564 F 564 (605)
Q Consensus 564 ~ 564 (605)
|
T Consensus 245 y 245 (251)
T d1jj7a_ 245 Y 245 (251)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.5e-43 Score=347.53 Aligned_cols=205 Identities=22% Similarity=0.358 Sum_probs=154.3
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.+|++.||. ++||.. -.|++++ .+++||++||+||||||||||+|+|+|+++|++|+|..
T Consensus 2 ~~i~v~nl~--------k~yg~~-~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~---------- 62 (240)
T d1g2912 2 AGVRLVDVW--------KVFGEV-TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI---------- 62 (240)
T ss_dssp EEEEEEEEE--------EEETTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE----------
T ss_pred CcEEEEeEE--------EEECCE-EEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEE----------
Confidence 467877755 466653 2455555 35799999999999999999999999999999999852
Q ss_pred hccchhhhhHHHHH--HHHHHHhhcccccccchhh-hhchhhh-----hcCchHHHHHHHHHHhhcCCchhhcccCCCCC
Q 040300 147 FRGSELQNYFTRIL--EDNLKAIIKPQYVDHIPKA-VQGNVGQ-----VLDQKDERDMKADLCTDLDLNQVIDRNVGDLS 218 (605)
Q Consensus 147 ~~g~~l~~~~~~~~--~~~~~~~~~~q~~~~~~~~-~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LS 218 (605)
.|.++........ ...-...+.+|.....|.. +..++.. .+.....++++.++++.++|++..++++++||
T Consensus 63 -~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LS 141 (240)
T d1g2912 63 -GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELS 141 (240)
T ss_dssp -TTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSC
T ss_pred -CCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCC
Confidence 2222211100000 0000122333433333321 1112111 12334557789999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 219 GGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 219 GGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||+|||+|||||+++|++|||||||++||+.++..++++|+++.++ |.|||+||||++++..+||||++|+++
T Consensus 142 GGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G 216 (240)
T d1g2912 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRG 216 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999876 999999999999999999999999753
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.2e-42 Score=337.06 Aligned_cols=204 Identities=25% Similarity=0.330 Sum_probs=152.4
Q ss_pred eEEEecCCcccCCCceEEeCCC--ce-eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN--TF-KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~--~f-~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
+|+|.||. +.|+.. .+ .|++++ .+++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 1 mI~i~nls--------k~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~--------- 63 (230)
T d1l2ta_ 1 MIKLKNVT--------KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY--------- 63 (230)
T ss_dssp CEEEEEEE--------EEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---------
T ss_pred CEEEEeEE--------EEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeE---------
Confidence 36677655 455432 12 456666 4689999999999999999999999999999999984
Q ss_pred hhhccchhhhhHHHHHHH--HHHHhhcccccccchhh-hhchhhh--------hcCchHHHHHHHHHHhhcCCch-hhcc
Q 040300 145 TYFRGSELQNYFTRILED--NLKAIIKPQYVDHIPKA-VQGNVGQ--------VLDQKDERDMKADLCTDLDLNQ-VIDR 212 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~--~~~~~~~~q~~~~~~~~-~~~~v~~--------~l~~~~~~~~~~~~l~~l~L~~-~~dr 212 (605)
+.|.++..+....... .-...+.+|....+|.. +..++.. .....+..+++.++++.++|.+ ++++
T Consensus 64 --~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 141 (230)
T d1l2ta_ 64 --IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH 141 (230)
T ss_dssp --ETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTC
T ss_pred --ECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcC
Confidence 4444443322111111 11234445554444432 2222111 1122345677889999999975 6899
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++.+|||||||||+|||||+++|++||||||||+||+..+..++++|+++.++ |+|||+||||++++ .+||||++|+.
T Consensus 142 ~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~ 220 (230)
T d1l2ta_ 142 KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKD 220 (230)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEET
T ss_pred ChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999765 99999999999987 68999999975
Q ss_pred c
Q 040300 292 K 292 (605)
Q Consensus 292 ~ 292 (605)
+
T Consensus 221 G 221 (230)
T d1l2ta_ 221 G 221 (230)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5.6e-42 Score=341.73 Aligned_cols=205 Identities=20% Similarity=0.302 Sum_probs=162.8
Q ss_pred hhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------ccee
Q 040300 345 ETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNV 415 (605)
Q Consensus 345 ~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i 415 (605)
+++ +|+|++....+++++|++.+| |++||+||||||||||+++|+|+++|++|+|. +.++. +.+|
T Consensus 5 knv-sf~Y~~~~~vL~~isl~i~~G-----e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 78 (242)
T d1mv5a_ 5 RHV-DFAYDDSEQILRDISFEAQPN-----SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78 (242)
T ss_dssp EEE-EECSSSSSCSEEEEEEEECTT-----EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred EEE-EEECCCCCceeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhhe
Confidence 344 899987556799999999998 68999999999999999999999999999985 22221 2359
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-----------hhccCcCcCChhHHHHHHHHHHHcc
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-----------LMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
+|+||++. .|..|+++++...... ........+.++..++.. .......+|||||||||+|||||++
T Consensus 79 ~~v~Q~~~-lf~~ti~eNi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~ 156 (242)
T d1mv5a_ 79 GFVSQDSA-IMAGTIRENLTYGLEG-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (242)
T ss_dssp CEECCSSC-CCCEEHHHHTTSCTTS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEccccc-cCCcchhhheeccccc-ccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999975 4678999997543222 122333334444333322 2233456799999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMN 562 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~ 562 (605)
+|+|||||||||+||+.++..+++.|+++. .++|+|+||||++.+.. ||||++|+++.. ...|+|+++++...
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l~~~~~-~D~i~vl~~G~i--v~~G~~~eLl~~~~ 229 (242)
T d1mv5a_ 157 NPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLSTIVD-ADKIYFIEKGQI--TGSGKHNELVATHP 229 (242)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHHHHHH-CSEEEEEETTEE--CCCSCHHHHHHHCH
T ss_pred CCCEEEecCCccccCHHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHh-CCEEEEEECCEE--EEECCHHHHHhCCh
Confidence 999999999999999999999999999985 38999999999998865 999999997554 46799999987643
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.8e-42 Score=342.90 Aligned_cols=205 Identities=23% Similarity=0.329 Sum_probs=152.8
Q ss_pred eEEEecCCcccCCCceEEeCCCce-eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTF-KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f-~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.|++.|| +|+|+...+ .|++++ .+++||++||+||||||||||+++|+|+++|++|+|..
T Consensus 3 ~i~v~nl--------sk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~---------- 64 (242)
T d1oxxk2 3 RIIVKNV--------SKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF---------- 64 (242)
T ss_dssp CEEEEEE--------EEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE----------
T ss_pred EEEEEeE--------EEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEE----------
Confidence 4666665 556743333 466666 46899999999999999999999999999999999852
Q ss_pred hccchhhhhHHHHH-HHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCCh
Q 040300 147 FRGSELQNYFTRIL-EDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219 (605)
Q Consensus 147 ~~g~~l~~~~~~~~-~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSG 219 (605)
.|.++........ ...-...+.+|.....|. .+..++... +.+.+.++++.++++.+||++.+++++.+|||
T Consensus 65 -~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSG 143 (242)
T d1oxxk2 65 -DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSG 143 (242)
T ss_dssp -TTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCH
T ss_pred -CCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCH
Confidence 2221110000000 000011222333222232 112222111 23445678899999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||||+|||||+++|++|||||||++||+..+..++++|++|.++ |+|||+||||++++..+||||++|+.+
T Consensus 144 GqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G 217 (242)
T d1oxxk2 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKG 217 (242)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999765 999999999999999999999999743
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-41 Score=332.99 Aligned_cols=201 Identities=20% Similarity=0.299 Sum_probs=162.1
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+|+|+.. ..++++++|++.+| |++||+||||||||||+++|+|+++|++|+|. +.++. +..++|+
T Consensus 8 sf~Y~~~~~~vL~~isl~i~~G-----e~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v 82 (241)
T d2pmka1 8 RFRYKPDSPVILDNINLSIKQG-----EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVV 82 (241)
T ss_dssp EEESSTTSCEEEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEeCCCCcceEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEE
Confidence 8999643 34789999999998 68999999999999999999999999999986 33222 2359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCC-----------chhhccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLI-----------EQLMDQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||++. .|..|+++++..... ........++++..++ +......+.+|||||||||+|||||+++|+
T Consensus 83 ~Q~~~-lf~~Ti~eNi~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 83 LQDNV-LLNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp CSSCC-CTTSBHHHHHCTTST--TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred ecccc-cCCccccccccccCc--cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence 99975 578899999854321 1223333333333333 334456678999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMN 562 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~ 562 (605)
||||||||++||+.++..+++.|+++. .++|+|+||||++.+. .||||+||+++.. ...|+|+++++..+
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l~~~~-~~D~i~vl~~G~I--v~~G~~~ell~~~~ 229 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVK-NADRIIVMEKGKI--VEQGKHKELLSEPE 229 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGGGGT-TSSEEEEEETTEE--EEEECHHHHHHSTT
T ss_pred hhhhhCCccccCHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHH-hCCEEEEEECCEE--EEECCHHHHHhCCC
Confidence 999999999999999999999999984 3899999999999885 6999999997554 46799999987644
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=9.5e-42 Score=339.64 Aligned_cols=203 Identities=22% Similarity=0.326 Sum_probs=154.0
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++||.. ..|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. +
T Consensus 6 ~Lev~~l~--------k~yg~~-~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~-----------~ 65 (240)
T d1ji0a_ 6 VLEVQSLH--------VYYGAI-HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII-----------F 65 (240)
T ss_dssp EEEEEEEE--------EEETTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-----------E
T ss_pred EEEEeeEE--------EEECCE-EEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEE-----------e
Confidence 57777754 577754 3456665 4579999999999999999999999999999999985 4
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhhh----hcCchHHHHHHHHHHhhc-CCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVGQ----VLDQKDERDMKADLCTDL-DLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~~----~l~~~~~~~~~~~~l~~l-~L~~~~dr~v~~LSGGe 221 (605)
.|.++........ .....++.||.....|.. +..++.. .......++.++++++.+ ++.+.+++++++|||||
T Consensus 66 ~G~~i~~~~~~~~-~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~ 144 (240)
T d1ji0a_ 66 NGQDITNKPAHVI-NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGE 144 (240)
T ss_dssp TTEECTTCCHHHH-HHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHH
T ss_pred cccccccccHHHH-HHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHH
Confidence 4544433222111 122234445543333321 1111110 112233455566777776 68899999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||||+++|++|||||||++||+.++.+++++|++++++|+|||+||||++++..+||||++|+.+
T Consensus 145 ~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G 215 (240)
T d1ji0a_ 145 QQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETG 215 (240)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999753
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.3e-41 Score=339.96 Aligned_cols=204 Identities=22% Similarity=0.337 Sum_probs=154.1
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
..|++.|| +++||.. -.|++++ .+++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 3 ~iL~v~nl--------sk~yg~~-~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~----------- 62 (254)
T d1g6ha_ 3 EILRTENI--------VKYFGEF-KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY----------- 62 (254)
T ss_dssp EEEEEEEE--------EEEETTE-EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-----------
T ss_pred ceEEEEEE--------EEEECCe-EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEE-----------
Confidence 45677765 5578764 3567777 4689999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchh--h----------------hhcCchHHHHHHHHHHhhcCCc
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNV--G----------------QVLDQKDERDMKADLCTDLDLN 207 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v--~----------------~~l~~~~~~~~~~~~l~~l~L~ 207 (605)
+.|.++......... ....++.+|.....+.. +..++ . .........+++.++++.+++.
T Consensus 63 ~~g~~i~~~~~~~~~-~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 141 (254)
T d1g6ha_ 63 FENKDITNKEPAELY-HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 141 (254)
T ss_dssp ETTEECTTCCHHHHH-HHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG
T ss_pred ECCEeccchhHHHHH-HhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcc
Confidence 333333221111000 11122233332222211 00000 0 0012234457788999999999
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEE
Q 040300 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFIC 287 (605)
Q Consensus 208 ~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~ 287 (605)
+..++++.+|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++|.|||+||||++++..+||||+
T Consensus 142 ~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~ 221 (254)
T d1g6ha_ 142 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 221 (254)
T ss_dssp GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEE
T ss_pred hhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred EEeCc
Q 040300 288 CLYGK 292 (605)
Q Consensus 288 vl~g~ 292 (605)
+|+.+
T Consensus 222 vm~~G 226 (254)
T d1g6ha_ 222 VMFNG 226 (254)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 99753
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.2e-41 Score=335.17 Aligned_cols=202 Identities=21% Similarity=0.314 Sum_probs=154.3
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+||.|.||. ++||.. -.|++++ .+++||++||+||||||||||+|+|+|+++|+.|++.
T Consensus 1 gaI~v~nl~--------k~yg~~-~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~----------- 60 (238)
T d1vpla_ 1 GAVVVKDLR--------KRIGKK-EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT----------- 60 (238)
T ss_dssp CCEEEEEEE--------EEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-----------
T ss_pred CCEEEEeEE--------EEECCE-EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE-----------
Confidence 488888865 477765 2456665 3589999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhh---hh--cCchHHHHHHHHHHhhcCCchhhcccCCCCChH
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVG---QV--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG 220 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~---~~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG 220 (605)
+.|.++...... . .....+.||.....+.. ....+. .+ .......+.++.+++.++|.+..++++.+||||
T Consensus 61 i~G~~i~~~~~~-~--~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG 137 (238)
T d1vpla_ 61 VFGKNVVEEPHE-V--RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKG 137 (238)
T ss_dssp ETTEETTTCHHH-H--HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHH
T ss_pred ECcEecccChHH-H--HhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHH
Confidence 223322211110 0 11122334432222211 001110 11 123344567888999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 221 ELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 221 e~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||++||+||+++|++|||||||++||+.++..++++|++++++|+|||++|||++++..+||||++|+.+
T Consensus 138 ~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G 209 (238)
T d1vpla_ 138 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNG 209 (238)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETT
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999988999999999999999999999999753
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.4e-41 Score=337.89 Aligned_cols=204 Identities=24% Similarity=0.352 Sum_probs=154.9
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
.|+|.|| +++||.. -.|++++ .+++||++||+|+||||||||+++|+|+++|++|+|. +
T Consensus 2 ~Lev~nl--------~k~yg~~-~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~-----------~ 61 (258)
T d1b0ua_ 2 KLHVIDL--------HKRYGGH-EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII-----------V 61 (258)
T ss_dssp CEEEEEE--------EEEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-----------E
T ss_pred eEEEEEE--------EEEECCE-EEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEE-----------E
Confidence 4777775 4577654 3466666 4689999999999999999999999999999999985 2
Q ss_pred ccchhhhh-----------HHHHHHHHHHHhhcccccccchhh-hhchhhh------hcCchHHHHHHHHHHhhcCCch-
Q 040300 148 RGSELQNY-----------FTRILEDNLKAIIKPQYVDHIPKA-VQGNVGQ------VLDQKDERDMKADLCTDLDLNQ- 208 (605)
Q Consensus 148 ~g~~l~~~-----------~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~~------~l~~~~~~~~~~~~l~~l~L~~- 208 (605)
.|.++... .........+..+.+|.....|.. +..++.. .....+.++++.++++.++|.+
T Consensus 62 ~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 141 (258)
T d1b0ua_ 62 NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER 141 (258)
T ss_dssp TTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH
T ss_pred CCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchh
Confidence 22221100 000001112233445544433321 2222211 1233456778999999999976
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
..++++.+|||||+|||+|||||+.+|++|||||||++||+..+.+++++|+++.++|+|||+||||++++..+||||++
T Consensus 142 ~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~v 221 (258)
T d1b0ua_ 142 AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF 221 (258)
T ss_dssp HHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEE
T ss_pred hhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEE
Confidence 56889999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred EeCc
Q 040300 289 LYGK 292 (605)
Q Consensus 289 l~g~ 292 (605)
|+.+
T Consensus 222 m~~G 225 (258)
T d1b0ua_ 222 LHQG 225 (258)
T ss_dssp EETT
T ss_pred EECC
Confidence 9753
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.5e-40 Score=333.38 Aligned_cols=207 Identities=20% Similarity=0.354 Sum_probs=164.5
Q ss_pred hhheeeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cce
Q 040300 345 ETYARYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFN 414 (605)
Q Consensus 345 ~~~~~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~ 414 (605)
+++ +|+|++. ..++++++|++.+| |++||+||||||||||+++|+|+++|++|+|. +.++. ...
T Consensus 17 ~nv-sf~Y~~~~~~~L~~isl~i~~G-----e~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 17 RNV-TFTYPGREVPALRNINLKIPAG-----KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp EEE-EECSSSSSCCSEEEEEEEECTT-----CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred EEE-EEEeCCCCCceeeceEEEEcCC-----CEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhhe
Confidence 344 8999754 34789999999998 68999999999999999999999999999986 22222 125
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcC-----------CchhhccCcCcCChhHHHHHHHHHHHc
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLL-----------IEQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~-----------l~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
++|+||++. .|..|+++++...... ......+.++++..+ ++....+.+.+|||||||||+|||||+
T Consensus 91 i~~v~Q~~~-l~~~ti~~n~~~~~~~-~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 91 VALVSQNVH-LFNDTVANNIAYARTE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp EEEECSSCC-CCSSBHHHHHHTTTTS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred EEEEeeccc-cCCcchhhhhhhcCcc-cCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHh
Confidence 999999874 4678998887543212 123333444444443 344455677899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL 563 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~ 563 (605)
++|+||||||||++||+.++..+++.|+++. .++|+|+||||++.+. .||||+||+++.. ...|+|+++++....
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l~~~~-~~D~v~vl~~G~I--v~~G~~~eLl~~~~~ 243 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLSTIE-QADEIVVVEDGII--VERGTHSELLAQHGV 243 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEEECSCGGGTT-TCSEEEEEETTEE--EEEECHHHHHHHTSS
T ss_pred cCCCEEEeccccccCCHHHHHHHHHHHHHhc--cCCEEEEEECCHHHHH-hCCEEEEEECCEE--EEECCHHHHHhCCcH
Confidence 9999999999999999999999999999984 3899999999999885 6999999997554 567999999876433
Q ss_pred c
Q 040300 564 F 564 (605)
Q Consensus 564 ~ 564 (605)
|
T Consensus 244 y 244 (253)
T d3b60a1 244 Y 244 (253)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-40 Score=330.06 Aligned_cols=194 Identities=25% Similarity=0.383 Sum_probs=164.6
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccCc-------ceeEeecCcCCCCCcC
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIPE-------FNVSYKPQKISPKFQS 428 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~~-------~~i~y~~q~~~~~~~~ 428 (605)
.++++||++.+| |++||+||||||||||+++|+|+. |++|++. +..+.. ...+|++|.....+..
T Consensus 14 ~l~~isl~I~~G-----ei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (231)
T d1l7vc_ 14 RLGPLSGEVRAG-----EILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT 87 (231)
T ss_dssp TSCSEEEEEETT-----CEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSC
T ss_pred eecCEEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccc
Confidence 478899999888 789999999999999999999975 6889875 222211 2478999987767778
Q ss_pred cHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc-------CCCEEEEecCCCCCCHH
Q 040300 429 TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK-------PADIYLIDEPSAYLDSE 501 (605)
Q Consensus 429 tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~-------~p~lllLDEPt~~LD~~ 501 (605)
++.+++...... ....+.+.++++.+++.+.+++++.+|||||||||+|||||++ +|+||||||||+|||+.
T Consensus 88 ~v~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~ 166 (231)
T d1l7vc_ 88 PVWHYLTLHQHD-KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166 (231)
T ss_dssp BHHHHHHHHCSC-TTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHH
T ss_pred cHHHHhhhccch-hhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHH
Confidence 888876543222 2345678899999999999999999999999999999999997 77999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
++..+.++|+++.+ .|.|||+||||++++..+|||+++|+++.. .+.|+|+++++..
T Consensus 167 ~~~~i~~~i~~l~~-~g~tii~vtHdl~~~~~~~dri~vl~~G~i--v~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 167 QQSALDKILSALCQ-QGLAIVMSSHDLNHTLRHAHRAWLLKGGKM--LASGRREEVLTPP 223 (231)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEECCCCHHHHHHHCSBCCBEETTEE--CCCSBHHHHSCHH
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCEEEEEECCEE--EEECCHHHHhCCh
Confidence 99999999999865 599999999999999999999999997554 5679999998764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=5.1e-40 Score=329.33 Aligned_cols=206 Identities=19% Similarity=0.297 Sum_probs=166.2
Q ss_pred hhheeeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cce
Q 040300 345 ETYARYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFN 414 (605)
Q Consensus 345 ~~~~~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~ 414 (605)
+++ +|+|++. ..++++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +..
T Consensus 20 ~nv-sf~Y~~~~~~vL~~isl~i~~G-----e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~ 93 (255)
T d2hyda1 20 DHV-SFQYNDNEAPILKDINLSIEKG-----ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 93 (255)
T ss_dssp EEE-EECSCSSSCCSEEEEEEEECTT-----CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred EEE-EEEeCCCCCcceeceEEEEcCC-----CEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhe
Confidence 344 8999764 34789999999998 68999999999999999999999999999985 22221 235
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchh-----------hccCcCcCChhHHHHHHHHHHHc
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQL-----------MDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
++|++|++. .|..|+++++..... ......+.++++..++.++ ......+|||||||||+|||||+
T Consensus 94 i~~v~Q~~~-lf~~Ti~eNi~~g~~--~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~ 170 (255)
T d2hyda1 94 IGLVQQDNI-LFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 170 (255)
T ss_dssp EEEECSSCC-CCSSBHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred eeeeecccc-CCCCCHHHHHhccCc--CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHh
Confidence 999999874 578899999864321 2234455566666666443 22345679999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL 563 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~ 563 (605)
++|+||||||||++||+.++..+++.|+++. .++|+|+||||++.+. .||||++|+++.. ...|+|+++++....
T Consensus 171 ~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~TvI~itH~~~~~~-~~D~ii~l~~G~i--v~~G~~~eLl~~~~~ 245 (255)
T d2hyda1 171 NNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTIT-HADKIVVIENGHI--VETGTHRELIAKQGA 245 (255)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGTT-TCSEEEEEETTEE--EEEECHHHHHHTTSH
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHH-hCCEEEEEECCEE--EEECCHHHHHhCCcH
Confidence 9999999999999999999999999999974 3789999999999885 6999999997554 467999999886433
Q ss_pred c
Q 040300 564 F 564 (605)
Q Consensus 564 ~ 564 (605)
|
T Consensus 246 y 246 (255)
T d2hyda1 246 Y 246 (255)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1e-40 Score=329.68 Aligned_cols=192 Identities=25% Similarity=0.384 Sum_probs=147.0
Q ss_pred ceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILED 162 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 162 (605)
..++||.. .+ +++.-..+|+++|+||||||||||+|+|+|+++|+.|+|. +.|.++.+....
T Consensus 7 ~~k~~g~~--~~-~vs~~~~~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~-----------~~G~~i~~~~~~---- 68 (240)
T d2onka1 7 AEKRLGNF--RL-NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR-----------LNGADITPLPPE---- 68 (240)
T ss_dssp EEEEETTE--EE-EEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-----------ETTEECTTSCTT----
T ss_pred EEEEECCE--EE-EEEEEeCCEEEEEECCCCChHHHHHHHHHcCCCCCceEEE-----------ECCEECCcCCHH----
Confidence 45678763 23 2221114689999999999999999999999999999984 334333221110
Q ss_pred HHHHhhcccccccchh-hhhchhhhh---cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEE
Q 040300 163 NLKAIIKPQYVDHIPK-AVQGNVGQV---LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIY 238 (605)
Q Consensus 163 ~~~~~~~~q~~~~~~~-~~~~~v~~~---l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vl 238 (605)
.-..++.+|.....|. .+..++... ..+.+.++++.++++.+||.+++++++.+|||||||||+|||||+++|++|
T Consensus 69 ~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~il 148 (240)
T d2onka1 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL 148 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB
T ss_pred HcCceeeccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCce
Confidence 1122344454333332 122222211 223445678999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 239 MFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 239 llDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||||++||+..+..+++.|+++.++ |.|||+||||++++.++||||++|+.+
T Consensus 149 llDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G 203 (240)
T d2onka1 149 LLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNG 203 (240)
T ss_dssp EEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETT
T ss_pred EecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999765 999999999999999999999999643
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.1e-39 Score=320.85 Aligned_cols=199 Identities=25% Similarity=0.400 Sum_probs=145.9
Q ss_pred ceEEEecCCcccCCCceEEeCCC--ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPN--TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~--~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
++|++.| ++++|+.. ...|++++ .+++||++||+|+||||||||+++|+|+++|+.|+|.
T Consensus 10 g~I~~~n--------vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~--------- 72 (251)
T d1jj7a_ 10 GLVQFQD--------VSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLL--------- 72 (251)
T ss_dssp CCEEEEE--------EEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---------
T ss_pred ceEEEEE--------EEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEE---------
Confidence 3677776 56677542 24577777 4689999999999999999999999999999999984
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc----Cc-h---H-----HHHHHHHHHhhc--CCchh
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL----DQ-K---D-----ERDMKADLCTDL--DLNQV 209 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l----~~-~---~-----~~~~~~~~l~~l--~L~~~ 209 (605)
+.|.++..+....+... .++.+| .|..+.+++.+.+ .. . . ......+.++.+ +++..
T Consensus 73 --i~g~~i~~~~~~~~r~~--i~~v~Q----~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~ 144 (251)
T d1jj7a_ 73 --LDGKPLPQYEHRYLHRQ--VAAVGQ----EPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 144 (251)
T ss_dssp --ETTEEGGGBCHHHHHHH--EEEECS----SCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCB
T ss_pred --ECCEecchhhhHHHHHH--hhhccc----cccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhh
Confidence 45555544432222222 223333 3333333443221 10 0 0 111223444444 45566
Q ss_pred hcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEE
Q 040300 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 210 ~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~v 288 (605)
.++...+|||||||||+|||||+++|+|||||||||+||+.++..+++.|+++.++ ++|||+||||++.+.. ||+|++
T Consensus 145 i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~-aDrI~v 223 (251)
T d1jj7a_ 145 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILF 223 (251)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHT-CSEEEE
T ss_pred HhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHh-CCEEEE
Confidence 77888999999999999999999999999999999999999999999999998764 8999999999998864 999999
Q ss_pred EeCc
Q 040300 289 LYGK 292 (605)
Q Consensus 289 l~g~ 292 (605)
|+++
T Consensus 224 l~~G 227 (251)
T d1jj7a_ 224 LEGG 227 (251)
T ss_dssp EETT
T ss_pred EECC
Confidence 9754
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.2e-38 Score=321.05 Aligned_cols=193 Identities=22% Similarity=0.263 Sum_probs=151.3
Q ss_pred eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHH
Q 040300 356 VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLH 435 (605)
Q Consensus 356 ~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~ 435 (605)
.+++++++|++.+| |++||+||||||||||+++|+|+++|++|.+. + ..+++|+||... .+..|+++++.
T Consensus 49 ~pvL~~isl~i~~G-----e~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~---~-~g~i~~v~Q~~~-l~~~tv~eni~ 118 (281)
T d1r0wa_ 49 NPVLKNINLNIEKG-----EMLAITGSTGSGKTSLLMLILGELEASEGIIK---H-SGRVSFCSQFSW-IMPGTIKENII 118 (281)
T ss_dssp CEEEEEEEEEECTT-----CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE---C-CSCEEEECSSCC-CCSEEHHHHHT
T ss_pred CeEEeCeEEEEcCC-----CEEEEECCCCChHHHHHHHHhCCCcCCCcEEE---E-CCEEEEEecccc-ccCceeecccc
Confidence 35799999999998 68999999999999999999999999999974 2 236999999864 46789999985
Q ss_pred hhhccCCCCHHHHHHHHhhcCCc-----------hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040300 436 QKIRDSYTHPQFVSDVMKPLLIE-----------QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRI 504 (605)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~l~l~-----------~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~ 504 (605)
... .........+++...+. ....+...+|||||||||+|||||+++|+||||||||++||+.++.
T Consensus 119 ~~~---~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~ 195 (281)
T d1r0wa_ 119 FGV---SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEE 195 (281)
T ss_dssp TTS---CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHH
T ss_pred ccc---cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHH
Confidence 432 11223333444443332 2234556789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccccc
Q 040300 505 VAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLFL 565 (605)
Q Consensus 505 ~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~l 565 (605)
.+++.+.... ..++|+|+|||+++.+ ..||||++|+++.. ...|+|++++...+.|.
T Consensus 196 ~i~~~~~~~~-~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i--~~~Gt~~eL~~~~~~~~ 252 (281)
T d1r0wa_ 196 QVFESCVCKL-MANKTRILVTSKMEHL-RKADKILILHQGSS--YFYGTFSELQSLRPDFS 252 (281)
T ss_dssp HHHHHCCCCC-TTTSEEEEECSCHHHH-HTCSEEEEEETTEE--EEEECHHHHHHHCHHHH
T ss_pred HHHHHHHHHh-hCCCEEEEEechHHHH-HhCCEEEEEECCEE--EEECCHHHHhccCcHHH
Confidence 8876533322 3488999999999877 46999999997553 56799999987554454
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1e-37 Score=302.52 Aligned_cols=182 Identities=20% Similarity=0.307 Sum_probs=149.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--cceeEeecCcCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--EFNVSYKPQKISP 424 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--~~~i~y~~q~~~~ 424 (605)
++.|.. +++++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +..+. ..+++|+||+...
T Consensus 9 s~~y~~--~vl~~is~~i~~G-----ei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~ 81 (200)
T d1sgwa_ 9 SVGYDK--PVLERITMTIEKG-----NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIV 81 (200)
T ss_dssp EEESSS--EEEEEEEEEEETT-----CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCC
T ss_pred EEEeCC--eEEeceEEEEcCC-----CEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccC
Confidence 788853 4799999999998 68999999999999999999999999999986 22222 3469999998766
Q ss_pred CCcCcHHHHHHhh--hccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040300 425 KFQSTVRHLLHQK--IRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQ 502 (605)
Q Consensus 425 ~~~~tv~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~ 502 (605)
....|+.+++... ......+...+.+.++.+++.++ ++++.+|||||||||+|||||+++|++|||||||+|||+.+
T Consensus 82 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~ 160 (200)
T d1sgwa_ 82 PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 160 (200)
T ss_dssp CTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTT
T ss_pred CCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCccc-ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHH
Confidence 6677998876432 22222345566778888887654 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~ 542 (605)
+..+++.|.++.++.+.+||.++||+. +||++.+++
T Consensus 161 ~~~i~~~l~~~~~~~~~~ii~~~~~l~----~~D~~~~l~ 196 (200)
T d1sgwa_ 161 KHKVLKSILEILKEKGIVIISSREELS----YCDVNENLH 196 (200)
T ss_dssp HHHHHHHHHHHHHHHSEEEEEESSCCT----TSSEEEEGG
T ss_pred HHHHHHHHHHHHhCCCEEEEEEechhh----hcchhhhee
Confidence 999999999998776777777777753 699998874
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.6e-38 Score=311.59 Aligned_cols=193 Identities=24% Similarity=0.327 Sum_probs=142.0
Q ss_pred CCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 81 KDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 81 ~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++++|+.+ ...|++++ .+++||++||+|+||||||||+++|+|+++|+.|+|. +.|.++..+...
T Consensus 5 ~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~-----------i~g~~i~~~~~~ 73 (241)
T d2pmka1 5 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL-----------IDGHDLALADPN 73 (241)
T ss_dssp EEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-----------ETTEETTTSCHH
T ss_pred EEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEE-----------ECCEEecccchh
Confidence 4578889654 35677777 5789999999999999999999999999999999984 445554443322
Q ss_pred HHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcC-----------CchhhcccCCCCChHHHHH
Q 040300 159 ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLD-----------LNQVIDRNVGDLSGGELQR 224 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~-----------L~~~~dr~v~~LSGGe~QR 224 (605)
.+.+. .++.+| .|..+.+++.+.+. .....+.+.+.++..+ +....++...+|||||+||
T Consensus 74 ~lr~~--i~~v~Q----~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QR 147 (241)
T d2pmka1 74 WLRRQ--VGVVLQ----DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQR 147 (241)
T ss_dssp HHHHH--EEEECS----SCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHH
T ss_pred hhhce--EEEEec----ccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHH
Confidence 22221 233334 34444455554331 1111122222333222 2334556678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+|||||+++|+|||||||||+||+.++..+++.|+++.+ ++|||+||||++.+. .||+|++|+++
T Consensus 148 valARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~-~~D~i~vl~~G 213 (241)
T d2pmka1 148 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVK-NADRIIVMEKG 213 (241)
T ss_dssp HHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGGGT-TSSEEEEEETT
T ss_pred HhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHH-hCCEEEEEECC
Confidence 9999999999999999999999999999999999999876 899999999999885 69999999743
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-37 Score=312.54 Aligned_cols=197 Identities=24% Similarity=0.343 Sum_probs=140.9
Q ss_pred ceEEEecCCcccCCCceEEeCCCc-eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNT-FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~-f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
+.|++.| ++++|+.+. ..|++++ .+++||++||+|+||||||||+++|+|+++|+.|+|.
T Consensus 12 g~I~~~n--------vsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~---------- 73 (253)
T d3b60a1 12 GDLEFRN--------VTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL---------- 73 (253)
T ss_dssp CCEEEEE--------EEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE----------
T ss_pred eEEEEEE--------EEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEE----------
Confidence 4577766 556776542 3566666 4689999999999999999999999999999999985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc--C--chHHHHHHHHHHhhc-----------CCchhh
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL--D--QKDERDMKADLCTDL-----------DLNQVI 210 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l--~--~~~~~~~~~~~l~~l-----------~L~~~~ 210 (605)
+.|.++..+....+.. ...+.+|. |..+.+++.+.+ . ....++++.++++.. |++..+
T Consensus 74 -i~g~~i~~~~~~~~r~--~i~~v~Q~----~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~ 146 (253)
T d3b60a1 74 -MDGHDLREYTLASLRN--QVALVSQN----VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTII 146 (253)
T ss_dssp -ETTEETTTBCHHHHHH--TEEEECSS----CCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBC
T ss_pred -ECCcccchhhhhhhhh--eEEEEeec----cccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhh
Confidence 3444443322111111 12233333 322333332211 0 011122233333333 344555
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
.+.+.+|||||||||+|||||+++|+|||||||||+||+.++..+++.|+++.+ ++|||+||||++.+. .||+|++|+
T Consensus 147 ~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~-~~D~v~vl~ 224 (253)
T d3b60a1 147 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIE-QADEIVVVE 224 (253)
T ss_dssp CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-TCSEEEEEE
T ss_pred cCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHH-hCCEEEEEE
Confidence 667789999999999999999999999999999999999999999999999976 899999999999885 699999997
Q ss_pred C
Q 040300 291 G 291 (605)
Q Consensus 291 g 291 (605)
.
T Consensus 225 ~ 225 (253)
T d3b60a1 225 D 225 (253)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.2e-38 Score=317.41 Aligned_cols=192 Identities=21% Similarity=0.302 Sum_probs=135.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
|++++|+.+...|.+++ .+.+||++||+||||||||||+++|+|+++|+.|+|. +.|.++.++....+
T Consensus 6 nvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~-----------i~g~~i~~~~~~~~ 74 (242)
T d1mv5a_ 6 HVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT-----------IDGQPIDNISLENW 74 (242)
T ss_dssp EEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEE-----------ETTEESTTTSCSCC
T ss_pred EEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEE-----------ECCEEeccccHHHH
Confidence 45667765444566666 4689999999999999999999999999999999985 23333322110000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcC----chHHHHHHHHHHhhcCCc-------hhh----cccCCCCChHHHHHH
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKADLCTDLDLN-------QVI----DRNVGDLSGGELQRF 225 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~----~~~~~~~~~~~l~~l~L~-------~~~----dr~v~~LSGGe~QRv 225 (605)
. -+..|+.+.|..+.+++.+.+. .........+.++..++. +.+ .....+|||||||||
T Consensus 75 r------~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv 148 (242)
T d1mv5a_ 75 R------SQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRL 148 (242)
T ss_dssp T------TTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred H------hheEEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHH
Confidence 0 0123344444444445544321 111122223333333222 222 234467999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||+++|+|||||||||+||+.++..+++.|+++.+ ++|||+||||++.+.. ||+|++|+.+
T Consensus 149 ~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~-~D~i~vl~~G 213 (242)
T d1mv5a_ 149 AIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRLSTIVD-ADKIYFIEKG 213 (242)
T ss_dssp HHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSHHHHHH-CSEEEEEETT
T ss_pred HHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHh-CCEEEEEECC
Confidence 999999999999999999999999999999999999975 8999999999998875 9999999753
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-37 Score=305.76 Aligned_cols=175 Identities=30% Similarity=0.433 Sum_probs=134.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 180 (605)
++||++||+||||||||||+++|+|+. |+.|++. +.|.++..+...... ....+.+|... .+ +
T Consensus 23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~-----------~~g~~i~~~~~~~~~--~~~~~~~~~~~-~~--~ 85 (231)
T d1l7vc_ 23 RAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQ-----------FAGQPLEAWSATKLA--LHRAYLSQQQT-PP--F 85 (231)
T ss_dssp ETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEE-----------ESSSBGGGSCHHHHH--HHEEEECSCCC-CC--S
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEE-----------ECCEECCcCCHHHHH--hhceeeecccc-CC--c
Confidence 699999999999999999999999975 6889984 344443332111111 01111111110 01 0
Q ss_pred hchhhhh----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHcc-------CCCEEEEeCCCCCCCH
Q 040300 181 QGNVGQV----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQ-------NAEIYMFDEPSSYLDV 249 (605)
Q Consensus 181 ~~~v~~~----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~-------~p~vlllDEPts~LD~ 249 (605)
..++.+. .......+.++++++.+++.+.+++++++|||||+|||+||+||++ +|++|||||||++||+
T Consensus 86 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~ 165 (231)
T d1l7vc_ 86 ATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165 (231)
T ss_dssp SCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCH
T ss_pred cccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCH
Confidence 1112211 1222335678889999999999999999999999999999999997 7799999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 250 KQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 250 ~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
.++..+.++|+++.++|+|||+||||++++..+||+|++|+++
T Consensus 166 ~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G 208 (231)
T d1l7vc_ 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGG 208 (231)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECC
Confidence 9999999999999888999999999999999999999999754
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.8e-37 Score=309.34 Aligned_cols=197 Identities=21% Similarity=0.320 Sum_probs=145.5
Q ss_pred eEEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.|++.| ++++|+.+ ...|.+++ .+++||++||+|+||||||||+++|+|+++|+.|+|.
T Consensus 16 ~I~~~n--------vsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~----------- 76 (255)
T d2hyda1 16 RIDIDH--------VSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL----------- 76 (255)
T ss_dssp CEEEEE--------EEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE-----------
T ss_pred EEEEEE--------EEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccc-----------
Confidence 577666 56677654 24566776 4689999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchh-----------hcc
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQV-----------IDR 212 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~-----------~dr 212 (605)
+.|.++..+....+... . .|+.+.+..+.+++.+.+. .....+.+.++++..++.++ ...
T Consensus 77 i~g~~i~~~~~~~lr~~--i----~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 77 IDGHNIKDFLTGSLRNQ--I----GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp ETTEEGGGSCHHHHHHT--E----EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred cCCEEcccCCHHHhhhe--e----eeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 44544444322222211 2 2334444444555655331 11123445556666665432 233
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
...+|||||+||++|||||+++|+|||||||||+||+.++..+++.|+++.+ ++|||+||||++.+. .||+|++|+++
T Consensus 151 ~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~~~-~~D~ii~l~~G 228 (255)
T d2hyda1 151 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTIT-HADKIVVIENG 228 (255)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGTT-TCSEEEEEETT
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence 4567999999999999999999999999999999999999999999999876 899999999999885 59999999753
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=7.9e-35 Score=282.14 Aligned_cols=188 Identities=26% Similarity=0.401 Sum_probs=129.9
Q ss_pred EEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhc
Q 040300 70 IQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFR 148 (605)
Q Consensus 70 i~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~ 148 (605)
|+|.||.+ .|+. ..|.+++ .+++||++||+||||||||||+|+|+|+++|+.|+|. +.
T Consensus 3 lev~~ls~--------~y~~--~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~-----------~~ 61 (200)
T d1sgwa_ 3 LEIRDLSV--------GYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII-----------YN 61 (200)
T ss_dssp EEEEEEEE--------ESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-----------ET
T ss_pred EEEEEEEE--------EeCC--eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEE-----------EC
Confidence 66666554 5543 2355555 3579999999999999999999999999999999985 22
Q ss_pred cchhhhhHHHHHHHHHHHhhcccccccchhh-hhch---hhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHH
Q 040300 149 GSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGN---VGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQR 224 (605)
Q Consensus 149 g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~---v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QR 224 (605)
|.++.... -...+.||........ +... +.........+..+.++++.+++.+ +++++.+||||||||
T Consensus 62 g~~i~~~~-------~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qr 133 (200)
T d1sgwa_ 62 GVPITKVK-------GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-LKKKLGELSQGTIRR 133 (200)
T ss_dssp TEEGGGGG-------GGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-TTSBGGGSCHHHHHH
T ss_pred CEehhHhc-------CcEEEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc-cccccCcCCCcHHHH
Confidence 32222110 0111222221100000 0000 0111111112345667788888765 457799999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
++||+||+.+|++|||||||++||+.++..+++.|.++.++ +.+||.++|+++ +||++.+|+
T Consensus 134 v~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l~----~~D~~~~l~ 196 (200)
T d1sgwa_ 134 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS----YCDVNENLH 196 (200)
T ss_dssp HHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT----TSSEEEEGG
T ss_pred HHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechhh----hcchhhhee
Confidence 99999999999999999999999999999999999998765 566666667753 699999884
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-33 Score=286.74 Aligned_cols=169 Identities=22% Similarity=0.336 Sum_probs=117.1
Q ss_pred eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhccc
Q 040300 93 KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQ 171 (605)
Q Consensus 93 ~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q 171 (605)
.|++++ .+++||++||+||||||||||+++|+|+++|+.|.+... |. ..+.+|
T Consensus 51 vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~-----------g~---------------i~~v~Q 104 (281)
T d1r0wa_ 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-----------GR---------------VSFCSQ 104 (281)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECC-----------SC---------------EEEECS
T ss_pred EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEEC-----------CE---------------EEEEec
Confidence 455555 357999999999999999999999999999999998532 11 011122
Q ss_pred ccccchhhhhchhhhhcC--chHHHHHHHHHHhhc-------CC----chhhcccCCCCChHHHHHHHHHHHHccCCCEE
Q 040300 172 YVDHIPKAVQGNVGQVLD--QKDERDMKADLCTDL-------DL----NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIY 238 (605)
Q Consensus 172 ~~~~~~~~~~~~v~~~l~--~~~~~~~~~~~l~~l-------~L----~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vl 238 (605)
.... +.+++.+.+. ......+..++++.. .+ ...+++...+|||||||||+|||||+++|+||
T Consensus 105 ~~~l----~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~il 180 (281)
T d1r0wa_ 105 FSWI----MPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 180 (281)
T ss_dssp SCCC----CSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred cccc----cCceeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccch
Confidence 1111 1112221110 000001111112111 12 23445667789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 239 MFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 239 llDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||||+||+.++..+++.+......++|+|+|||+++.+. .||+|++|+.+
T Consensus 181 lLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G 233 (281)
T d1r0wa_ 181 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQG 233 (281)
T ss_dssp EEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETT
T ss_pred hhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHH-hCCEEEEEECC
Confidence 999999999999988888754444445899999999998875 69999999743
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.58 E-value=2.3e-17 Score=153.69 Aligned_cols=152 Identities=11% Similarity=0.076 Sum_probs=91.7
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCeeeeecccc----CcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHH
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI----PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDV 451 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~----~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~ 451 (605)
.++|+||||||||||+++|+|.++|+.|.+..... ...+.++......... +. .......... .
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~--------~ 69 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKK--KI--FSSKFFTSKK--------L 69 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCE--EE--EEETTCCCSS--------E
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHH--HH--Hhhhhhhhhh--------h
Confidence 37999999999999999999999999887641111 1111222111110000 00 0000000000 0
Q ss_pred HhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q 040300 452 MKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA 531 (605)
Q Consensus 452 l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~ 531 (605)
...++. +....++|+|+++|.++++++..+|+++++|||....+ ....+...|.++..+.+.++|+++|+...
T Consensus 70 ~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~~- 142 (178)
T d1ye8a1 70 VGSYGV----NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRDV- 142 (178)
T ss_dssp ETTEEE----CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSCC-
T ss_pred hhhhhc----CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCCCEEEEEEccHHH-
Confidence 000111 12234689999999999999999999999999854433 23445556666666668999999999653
Q ss_pred HhhcCEEEEEeCCcc
Q 040300 532 TYLADRVIVYEGQPS 546 (605)
Q Consensus 532 ~~~adrviv~~g~~~ 546 (605)
..+++++..+.++..
T Consensus 143 ~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 143 HPLVKEIRRLPGAVL 157 (178)
T ss_dssp SHHHHHHHTCTTCEE
T ss_pred HHhhceEEEEeCCEE
Confidence 345777766665443
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.46 E-value=3.4e-15 Score=138.73 Aligned_cols=72 Identities=18% Similarity=0.077 Sum_probs=52.7
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 215 ~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
.++|+|+++|.++++++..+|+++++|||+...+. ...+...+.++.+ .+.++|+++|+... ..++|++..+
T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~~~i~~~ 152 (178)
T d1ye8a1 80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTTSEEEEECCSSCC-SHHHHHHHTC
T ss_pred hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHhccCCCEEEEEEccHHH-HHhhceEEEE
Confidence 35899999999999999999999999998655432 2234455555544 48999999999654 3355555444
|
| >d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Fe-only hydrogenase larger subunit, N-domain species: Desulfovibrio desulfuricans [TaxId: 876]
Probab=98.94 E-value=1.1e-10 Score=95.50 Aligned_cols=60 Identities=27% Similarity=0.602 Sum_probs=50.5
Q ss_pred ceEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEE
Q 040300 5 LTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
..++..||.|+|. .|+. |.++||.+ +|.++.....++++.+.|++||.|+..||++||.+
T Consensus 23 ~~~~~~id~~~Ci--~C~~-Cv~~Cp~~-----ai~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI~~ 82 (85)
T d1hfel2 23 KLHFVQIDEAKCI--GCDT-CSQYCPTA-----AIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYE 82 (85)
T ss_dssp GCCSEEECTTTCC--CCCH-HHHHCTTC-----CCBCCTTSCCBCCCGGGCCCCCTTGGGCTTCCEEE
T ss_pred ccceEEEcHHHCC--Cchh-HHHHCCcc-----CEEeecCCceEeCChhHCCCcChhhhhCCccceEe
Confidence 3456788999995 8975 99999963 56666666788899999999999999999999975
|
| >d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Peptostreptococcus asaccharolyticus [TaxId: 1258]
Probab=98.91 E-value=2.9e-10 Score=85.08 Aligned_cols=55 Identities=40% Similarity=0.863 Sum_probs=45.3
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEec
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
|.|..|+| ..|+ .|.+.||.. .|. . .+++.|+.+.|+|||.|+..||++||++.|
T Consensus 1 Ay~i~d~C--~~C~-~C~~~CP~~-----ai~--~-~~~~~i~~~~C~~Cg~C~~~CP~~AI~~ed 55 (55)
T d1dura_ 1 AYVINDSC--IACG-ACKPECPVN-----CIQ--E-GSIYAIDADSCIDCGSCASVCPVGAPNPED 55 (55)
T ss_dssp CEEECTTC--CCCC-CSGGGCTTC-----CEE--C-SSSCEECTTTCCCCCHHHHHCTTCCEEECC
T ss_pred CeEeCccC--cChh-HHHhhCCcC-----eEe--C-CceeEEChhHCcCCCChhhhCCcCcCCCcC
Confidence 56778999 4786 599999975 343 2 356889999999999999999999999764
|
| >d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Clostridium acidurici [TaxId: 1556]
Probab=98.83 E-value=6.9e-10 Score=83.02 Aligned_cols=53 Identities=34% Similarity=0.783 Sum_probs=44.5
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEE
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQ 71 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~ 71 (605)
|.|+.|+|. .|+ .|.+.||.. +|.+++ ++..|+++.|+|||.|+..||++||.
T Consensus 1 A~vi~e~C~--~Cg-~C~~~Cp~~-----ai~~~~--~~~~i~~~~C~~Cg~C~~~CP~~AI~ 53 (55)
T d2fdna_ 1 AYVINEACI--SCG-ACEPECPVN-----AISSGD--DRYVIDADTCIDCGACAGVCPVDAPV 53 (55)
T ss_dssp CEEECTTCC--CCC-TTGGGCTTC-----CEECCS--SSCEECTTTCCCCCHHHHTCTTCCEE
T ss_pred CEEeCcCCC--Chh-hHHHhcCcc-----ceEcCC--ceEEECHHHCCCCCChhcccCCCCcC
Confidence 678889994 685 699999963 566544 67899999999999999999999984
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=4.7e-09 Score=109.21 Aligned_cols=78 Identities=26% Similarity=0.404 Sum_probs=65.1
Q ss_pred ccCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEE
Q 040300 212 RNVGDLSGGELQRFAIAVVA----VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFIC 287 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL----~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~ 287 (605)
+++..|||||+.+++||-.+ ..++++++||||+++||+..+..+.++|+++...+.-+|+|||+..+++. ||+++
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~-ad~~~ 406 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK-SDALV 406 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT-CSEEE
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHh-cccEE
Confidence 45578999999998877543 45778999999999999999999999999886656679999999998875 78877
Q ss_pred EEe
Q 040300 288 CLY 290 (605)
Q Consensus 288 vl~ 290 (605)
.++
T Consensus 407 ~V~ 409 (427)
T d1w1wa_ 407 GVY 409 (427)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
|
| >d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Dihydropyrimidine dehydrogenase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.81 E-value=9.4e-10 Score=102.01 Aligned_cols=70 Identities=20% Similarity=0.590 Sum_probs=56.2
Q ss_pred CCceEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCc-ceEEEecCCcc
Q 040300 3 DRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF-EAIQIINLPKD 78 (605)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~-~ai~i~nl~~~ 78 (605)
+...+||+||.|+| -.|+. |..+||..-. ..|..++. .+..|+++.|+|||.|+..||+ +||++++-+..
T Consensus 96 ~~~~~va~id~~~C--i~C~~-C~~~Cp~~ai--~~i~~~~~-~~~~v~~~~C~gCg~C~~vCP~~~aI~mv~~~~~ 166 (173)
T d1gtea5 96 NIEQVVAVIDEEMC--INCGK-CYMTCNDSGY--QAIQFDPE-THLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTP 166 (173)
T ss_dssp SSSCEEEEECTTTC--CCCCH-HHHHHHHHSC--SCEEECTT-TCCEEECTTCCCCCHHHHHCSSTTTEEEEECCSC
T ss_pred CCCceEEEEEchhC--CCchH-HHHhhhhCCE--EEEEecCC-CceEechhhCCCcChhHhhCCCCCcEEEEeCCCC
Confidence 45678999999999 58975 9999997643 35666554 5567788899999999999996 89999976553
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.80 E-value=6.6e-09 Score=108.06 Aligned_cols=78 Identities=26% Similarity=0.293 Sum_probs=64.6
Q ss_pred ccCcCcCChhHHHHHHHHHHH----ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCE
Q 040300 462 DQEVVNLSGGELQRVALCLCL----GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADR 537 (605)
Q Consensus 462 ~~~~~~LSGGe~QRvaiA~aL----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adr 537 (605)
.++...|||||+.+++||..| ..++++++||||+++||+..+..+.++|+++. ..+.-+|++||+..++. .||+
T Consensus 327 ~~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~-~~~~Q~I~iTH~~~~~~-~ad~ 404 (427)
T d1w1wa_ 327 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR-NPDLQFIVISLKNTMFE-KSDA 404 (427)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC-BTTBEEEEECSCHHHHT-TCSE
T ss_pred hhhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHH-hccc
Confidence 345688999999998877544 45778999999999999999999999999874 34567999999988775 5899
Q ss_pred EEEE
Q 040300 538 VIVY 541 (605)
Q Consensus 538 viv~ 541 (605)
++.+
T Consensus 405 ~~~V 408 (427)
T d1w1wa_ 405 LVGV 408 (427)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
|
| >d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: 7-Fe ferredoxin domain: Ferredoxin species: Bacillus schlegelii [TaxId: 1484]
Probab=98.77 E-value=1.2e-09 Score=87.49 Aligned_cols=57 Identities=33% Similarity=0.765 Sum_probs=47.0
Q ss_pred EEEeCCCCCccccc-chhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEec
Q 040300 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
|.|..|+|. .|. --|.+.||.+ +|..++ ++.+|+++.|+|||.|+..||++||+...
T Consensus 1 ayvv~~~C~--~C~~g~C~~~CP~~-----Ai~~~~--~~~~id~~~C~~Cg~C~~~CP~~AI~~~~ 58 (77)
T d1bc6a_ 1 AYVITEPCI--GTKDASCVEVCPVD-----CIHEGE--DQYYIDPDVCIDCGACEAVCPVSAIYHED 58 (77)
T ss_dssp CEECCSTTT--TCCCCSSTTTCTTC-----CEEECS--SSEEECTTTCCSCCSHHHHSGGGSSEETT
T ss_pred CEEcCccCC--CccCcchhhhCCCC-----CeeccC--CEEEEChhHCcCcCccchhCCccccCCCc
Confidence 678899995 675 3699999974 566654 57899999999999999999999998753
|
| >d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: 7-Fe ferredoxin domain: Ferredoxin species: Thermus thermophilus [TaxId: 274]
Probab=98.72 E-value=2.8e-09 Score=85.32 Aligned_cols=55 Identities=38% Similarity=0.756 Sum_probs=45.4
Q ss_pred EEeCCCCCccccc-chhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEe
Q 040300 10 IVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
.|+.|+|. .|. ..|.+.||+. +|.+++ ++.+|+++.|+|||.|+..||++||.+.
T Consensus 2 ~vv~d~C~--~C~~~~C~~~CP~~-----AI~~~~--~~~~id~~~Ci~Cg~C~~~CP~~AI~~~ 57 (77)
T d1h98a_ 2 HVICEPCI--GVKDQSCVEVCPVE-----CIYDGG--DQFYIHPEECIDCGACVPACPVNAIYPE 57 (77)
T ss_dssp EEECGGGT--TTCCCHHHHHCTTC-----CEEECS--SSEEECTTTCCCCCTHHHHCTTCCEEEG
T ss_pred EEeCccCC--CcCCchhHHHCCCC-----ceEccC--cEEEEcHHHCCCcCcCccccCcCccCCC
Confidence 46778885 665 4899999963 676654 5789999999999999999999999874
|
| >d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Adenylylsulfate reductase B subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.67 E-value=4.1e-09 Score=95.26 Aligned_cols=58 Identities=28% Similarity=0.652 Sum_probs=48.6
Q ss_pred EEeCCCCCcccccc----hhhcccCccccCceEEEEcCCCCce-eeccccccccccccccCCcceEEEec
Q 040300 10 IVSSDRCKPKKCRQ----ECKKSCPVVKTGKLCIEVTPAAKIA-FISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 10 ~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~-~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
.||.|+|. .|++ -|.++||. .+|.++++++++ .|+.+.|++||.|++.||++||++..
T Consensus 3 ~id~~~C~--gCg~c~~~~C~~~CP~-----~ai~~~~~~~~~~~~d~~~C~~C~~C~~~CP~~Ai~~~~ 65 (149)
T d1jnrb_ 3 FVNPEKCD--GCKALERTACEYICPN-----DLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAIDVRG 65 (149)
T ss_dssp EECTTTCC--SCCSSSSCHHHHHCTT-----SCEEEETTTTEEEESCGGGCCCCCHHHHHCTTCCEEECC
T ss_pred EEcchhCC--CCCCCCcchHHHhCCc-----ccEEecCCCcEEEEeccccCCCCccccCcCchheeeecc
Confidence 58999996 6875 79999996 367787766655 57889999999999999999999864
|
| >d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Chromatium vinosum [TaxId: 1049]
Probab=98.63 E-value=2.8e-09 Score=85.97 Aligned_cols=56 Identities=30% Similarity=0.697 Sum_probs=47.5
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeecccccccc------ccccccCCcceEEEec
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGC------GICVKKCPFEAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~------g~~~~~cp~~ai~i~n 74 (605)
|+|+.|+| ..|+ .|.+.||+. +|.+.. ++++|+++.|++| |.|+..||++||....
T Consensus 1 a~iitd~C--i~Cg-~C~~~CP~~-----AI~~~~--~~~~id~~~C~~C~~~~~~G~C~~vCP~~AI~~~~ 62 (80)
T d1blua_ 1 ALMITDEC--INCD-VCEPECPNG-----AISQGD--ETYVIEPSLCTECVGHYETSQCVEVCPVDCIIKDP 62 (80)
T ss_dssp CEEECTTC--CCCC-TTGGGCTTC-----CEEECS--SSEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECT
T ss_pred CEEeCcCC--CChH-HHHHHChhc-----chhhcC--cceEEccccccCCCCCCCCCccccccCCCCccCCC
Confidence 78999999 5795 699999963 676654 6789999999999 8999999999998763
|
| >d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: 7-Fe ferredoxin domain: Ferredoxin species: Azotobacter vinelandii [TaxId: 354]
Probab=98.63 E-value=7.7e-09 Score=87.82 Aligned_cols=57 Identities=37% Similarity=0.878 Sum_probs=47.8
Q ss_pred EEEeCCCCCccccc-chhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEec
Q 040300 9 AIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
|.|..|+|. .|. ..|...||++ +|...+ ++.+|+.++|||||.|+..|||+||....
T Consensus 1 ayvi~~~C~--~C~~~~C~~~CP~~-----ai~~~~--~~~~id~~~Ci~Cg~C~~~CP~~ai~~~~ 58 (106)
T d7fd1a_ 1 AFVVTDNCI--KCKYTDCVEVCPVD-----CFYEGP--NFLVIHPDECIDCALCEPECPAQAIFSED 58 (106)
T ss_dssp CEEECGGGT--TTCCCHHHHHCTTC-----CEEECS--SCEEECTTTCCCCCTTGGGCTTCCEEEGG
T ss_pred CEEcCccCC--CCCCCccccccCCC-----cccccC--CEEEEchHHCCCCCCccccCCCCCccccc
Confidence 567888996 786 4899999984 666654 67899999999999999999999998753
|
| >d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: DsrB insert domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.56 E-value=7.8e-09 Score=79.70 Aligned_cols=46 Identities=24% Similarity=0.559 Sum_probs=40.0
Q ss_pred ccc-chhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceE
Q 040300 20 KCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAI 70 (605)
Q Consensus 20 ~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai 70 (605)
.|. --|.+.||.+ +|..++++++..|+++.|||||.|++.||+.||
T Consensus 14 ~C~~~~Cv~~CP~~-----Ai~~~~~~g~v~id~~~CigCg~C~~aCP~~ai 60 (65)
T d3c7bb1 14 TCEIPSTVAACPTG-----ALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPL 60 (65)
T ss_dssp HCCHHHHHHTCTTC-----CEEEETTTTEEEECTTTCCCCCHHHHHCTTCCC
T ss_pred CCCChHHHHhCcCC-----CccccccCCcEEEeCCcCcccChhhhhCCcccc
Confidence 464 2699999985 677887788999999999999999999999988
|
| >d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: 7-Fe ferredoxin domain: Photosystem I iron-sulfur protein PsaC species: Synechococcus elongatus [TaxId: 32046]
Probab=98.41 E-value=2.3e-08 Score=80.46 Aligned_cols=60 Identities=27% Similarity=0.633 Sum_probs=44.9
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCC------CCceeeccccccccccccccCCcceEEEecCC
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPA------AKIAFISEELCIGCGICVKKCPFEAIQIINLP 76 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~------~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~ 76 (605)
+|.++|+| ..| ..|.+.||.. +|...+. .....|+++.|++||.|+..||++||++...+
T Consensus 3 ~v~~~d~C--i~C-g~Cv~~Cp~~-----~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~~ 68 (80)
T d1jb0c_ 3 TVKIYDTC--IGC-TQCVRACPTD-----VLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYL 68 (80)
T ss_dssp EEEEETTC--CCC-CHHHHHCTTC-----CCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCSSSCSEEEEC
T ss_pred ccccCCCC--cCc-cCHHHhCCcc-----ceEeeccccccccccceecchhhCcCCCCccccCCCCCceeEecC
Confidence 35668999 478 4799999964 3333221 12456889999999999999999999987654
|
| >d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Archaeal ferredoxins domain: Ferredoxin species: Archaeon Sulfolobus sp. [TaxId: 2288]
Probab=98.40 E-value=4.3e-08 Score=82.75 Aligned_cols=60 Identities=35% Similarity=0.570 Sum_probs=45.2
Q ss_pred EEEEeCCCCCcccccchhhcccCccccCceEEEEcC-----CCCceeeccccccccccccccCCcceEEEe
Q 040300 8 IAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTP-----AAKIAFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
+..||.|+|. .|+. |.+.||.+-.. +.-.+ ..+...|++..|++||.|+..||.+||++.
T Consensus 37 ~~~iD~~~Ci--~Cg~-C~~~CP~~ai~---~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~~ 101 (103)
T d1xera_ 37 IVGVDFDLCI--ADGS-CINACPVNVFQ---WYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAIDVK 101 (103)
T ss_dssp SEEEETTTCC--CCCH-HHHHCTTCCCE---EEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTTCCEEEC
T ss_pred EEEECHHHCc--CcCc-ccccCccccee---eeccccccccccceeEeccccCCCcChHHhhcCccceEee
Confidence 4567999995 7965 99999987442 11111 112457899999999999999999999974
|
| >d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin A species: Thermotoga maritima [TaxId: 2336]
Probab=98.35 E-value=5.9e-08 Score=73.23 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=43.0
Q ss_pred eEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCcee--eccccccccccccccCCcceEEE
Q 040300 6 TRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAF--ISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
||| .||.|+|. .| ..|.+.||-+ +.++++ +++. ..+..|.+||.|+..||.+||+|
T Consensus 1 Mrv-~iD~~~C~--~C-g~C~~~cP~~------~~~~~~-g~~~~~~~~~~c~~c~~c~~~CP~~AI~i 58 (59)
T d1vjwa_ 1 MKV-RVDADACI--GC-GVCENLCPDV------FQLGDD-GKAKVLQPETDLPCAKDAADSCPTGAISV 58 (59)
T ss_dssp CBC-EECTTTCC--CC-CHHHHHCTTT------EEECTT-SSEEESCSBCCCTHHHHHHHHCTTCCEEC
T ss_pred CEE-EEeHHHCC--CC-CCChHhCchh------eEEccc-eeeEEecChHHCcCcCcccCccCcccEEe
Confidence 566 46999996 47 7899999943 445554 4343 34677999999999999999986
|
| >d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin species: Bacillus thermoproteolyticus [TaxId: 1427]
Probab=98.29 E-value=8.6e-08 Score=77.18 Aligned_cols=69 Identities=20% Similarity=0.440 Sum_probs=53.2
Q ss_pred EEEEEeCCCCCcccccchhhcccCcc----ccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecCCcc
Q 040300 7 RIAIVSSDRCKPKKCRQECKKSCPVV----KTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKD 78 (605)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~~ 78 (605)
++.+||+|+|- -| --|...||-+ ..|+..+..++..+...|.+++|++|+.|++.||.+||+|.+-|.+
T Consensus 2 ~~v~VD~~~Ci--gC-g~C~~~cP~~f~~~~dg~~~~~~~~~~~~~~v~~~~~~~~~~aa~~CP~~AI~v~d~p~~ 74 (81)
T d1iqza_ 2 KYTIVDKETCI--AC-GACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADEPFD 74 (81)
T ss_dssp CEEEECTTTCC--CC-SHHHHHCTTTEEECTTSCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESSCCT
T ss_pred cEEEEeHHHCc--Cc-ChHhHhCchheeEcCCCeEEEeecCCcCcccCCHHHHHHHHHHHHhCCcccEEEEeCCCC
Confidence 46899999995 45 6899999932 2344344333444567899999999999999999999999997753
|
| >d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Thauera aromatica [TaxId: 59405]
Probab=98.27 E-value=7.1e-08 Score=77.48 Aligned_cols=56 Identities=29% Similarity=0.591 Sum_probs=45.1
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeecccccccc------ccccccCCcceEEEec
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGC------GICVKKCPFEAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~------g~~~~~cp~~ai~i~n 74 (605)
|+|=.|+|- .|+. |.+.||.+ +|.++ ++++.|+.++|++| |.|+..||++||...+
T Consensus 1 a~~itd~Ci--~Cg~-C~~~CP~~-----AI~~~--~~~~~id~~~C~~C~~~~~~G~C~~vCP~~AI~~~~ 62 (80)
T d1rgva_ 1 ALYINDDCT--ACDA-CVEECPNE-----AITPG--DPIYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNP 62 (80)
T ss_dssp CBCCCSCCC--CCCT-TTTTCTTC-----CEECC--SSSCEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCG
T ss_pred CcEecccCc--CCcC-HHHHHHhC-----ccccc--cccccccCCCCcCCCCcCCCCcchhhccccCeeCCC
Confidence 455678885 6865 99999963 66654 46789999999999 8999999999997653
|
| >d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin I species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]
Probab=98.23 E-value=2.3e-07 Score=71.06 Aligned_cols=59 Identities=20% Similarity=0.442 Sum_probs=45.6
Q ss_pred EEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCcee---eccccccccccccccCCcceEEEec
Q 040300 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAF---ISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
|-..||.|+|- .|++ |...||.+ +.++++.+++. ++.+.|.+||.|++.||.+||+++.
T Consensus 2 ~~~~VD~~~Ci--gCg~-C~~~cP~~------f~~~~~~~~~~~~~~~~~~c~~c~~c~~~CP~~aI~~~e 63 (64)
T d1fxra_ 2 RKFYVDQDECI--ACES-CVEIAPGA------FAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED 63 (64)
T ss_dssp CEEEECTTTCC--CCCH-HHHHCTTT------EEEETTTTEEEESCTTSSCHHHHHHHHHHCTTCCEEEEC
T ss_pred CeEEEchhhCc--cCCC-ccccCcCe------EEEecCCCeeeeeccCCCcchhHHHHHhcCCcccEEEEe
Confidence 34679999996 7855 99999964 33444445555 3457999999999999999999863
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.21 E-value=1.7e-06 Score=82.82 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhcCCcEEEEEecCHhHHH
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQ-VVRSLLRPNSYVIVVEHDLSVLD 280 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~-~i~~l~~~g~tvivvsHdl~~l~ 280 (605)
.|.+++.-..-.+.+..++|+||+..+=|+.....++. +++.|.+.+..++++||..+...
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 45555555555556778999999999999988877666 55666666888999999977654
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.18 E-value=9.6e-07 Score=84.69 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q 040300 470 GGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMAT 532 (605)
Q Consensus 470 GGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~ 532 (605)
..|.+++.-..-.+.+..++|+||+..|=|+.....+...+-+...+.+..++++||..++..
T Consensus 99 ~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 99 MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HHhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 345555555555567778999999999999998887776666655556888999999987654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.08 E-value=4.6e-06 Score=82.61 Aligned_cols=77 Identities=22% Similarity=0.384 Sum_probs=65.0
Q ss_pred ccCCCCChHHHHHHHHHHH----HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEE
Q 040300 212 RNVGDLSGGELQRFAIAVV----AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFIC 287 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~a----L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~ 287 (605)
..+..||+||++..+++.. ....+.++++|||-++|+|.....+.+.|+++.+ +.-||++||...+++ .+|++.
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~~~~-~~d~~~ 292 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKIVME-AADLLH 292 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTTGGG-GCSEEE
T ss_pred chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHH-hcccEE
Confidence 4567899999999877654 4467789999999999999999999999998865 577999999999887 568887
Q ss_pred EEe
Q 040300 288 CLY 290 (605)
Q Consensus 288 vl~ 290 (605)
.+.
T Consensus 293 ~v~ 295 (308)
T d1e69a_ 293 GVT 295 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Fe3S4-ferredoxin PF1909 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.08 E-value=3.3e-07 Score=70.53 Aligned_cols=56 Identities=29% Similarity=0.403 Sum_probs=42.7
Q ss_pred EEeCCCCCcccccchhhcccCccccCceEEEEcCCC-----CceeeccccccccccccccCCcceEEEec
Q 040300 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAA-----KIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-----~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
.||.|+|. .|+ -|...||-+- .++++. ....++++.|++||.|+..||.+||+|.+
T Consensus 5 ~vD~~~Ci--~Cg-~C~~~CP~~~------~~~~~~~~~~~~~~~~~~~~c~~c~~c~~~CP~~AI~i~e 65 (66)
T d1sj1a_ 5 SVDQDTCI--GDA-ICASLCPDVF------EMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE 65 (66)
T ss_dssp EECTTTCC--CCC-HHHHHCTTTE------EECTTSCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEeHHHCC--CcC-hhhhhCCceE------EEcccCceEeeccccCChHHHhhhCHhhccCCcccEEEEe
Confidence 48999996 775 5999999542 222221 23567899999999999999999999864
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.07 E-value=4.2e-06 Score=82.88 Aligned_cols=76 Identities=29% Similarity=0.341 Sum_probs=64.0
Q ss_pred cCcCcCChhHHHHHHHHHHH----ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEE
Q 040300 463 QEVVNLSGGELQRVALCLCL----GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRV 538 (605)
Q Consensus 463 ~~~~~LSGGe~QRvaiA~aL----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrv 538 (605)
.....||+||++..+++..+ ..++.++++|||-++|+|..+..+.+.|++.. .+.-+|++||...+++ .+|++
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~--~~~QviitTHsp~~~~-~~d~~ 291 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKIVME-AADLL 291 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTTGGG-GCSEE
T ss_pred chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhc--cCCEEEEEECCHHHHH-hcccE
Confidence 35678999999998776653 45778999999999999999999999999874 3578999999988885 58998
Q ss_pred EEE
Q 040300 539 IVY 541 (605)
Q Consensus 539 iv~ 541 (605)
+.+
T Consensus 292 ~~v 294 (308)
T d1e69a_ 292 HGV 294 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Fe-only hydrogenase, second domain species: Clostridium pasteurianum [TaxId: 1501]
Probab=98.04 E-value=3.9e-07 Score=73.43 Aligned_cols=60 Identities=20% Similarity=0.501 Sum_probs=42.5
Q ss_pred EEEeCCCCCcccccchhhcccCccccCce-E-------EEEcCCCCceeeccccccccccccccCCcceEEE
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKL-C-------IEVTPAAKIAFISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~-------~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
-+||.+|| -.| .-|.++||.+-.... . ..+... ....|++..|++||.||..||++||+.
T Consensus 14 i~iD~~kC--I~C-~~Cv~aCp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~Cg~Cv~vCP~gAi~~ 81 (83)
T d3c8ya3 14 LTVDRTKC--LLC-GRCVNACGKNTETYAMKFLNKNGKTIIGAE-DEKCFDDTNCLLCGQCIIACPVAALSE 81 (83)
T ss_dssp EEEEGGGC--CCC-CHHHHHHHHHHSCCCSEEEEETTEEEEESG-GGCCGGGSSCCCCCHHHHHCSSTTEEE
T ss_pred EEEchhHC--CCC-chHHHhhcccccccceeeeccccceEEccc-ccccccccccccCCHHHhhCCCCcccc
Confidence 47899999 468 789999995432211 1 112111 234578889999999999999999975
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=2.3e-06 Score=82.50 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHH
Q 040300 472 ELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKV-IKRFILHAKKTAFVVEHDFIMA 531 (605)
Q Consensus 472 e~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tiivvsHD~~~~ 531 (605)
|.+|+.-+.-.+.+..++|+||+.+|=++.....+... ++.+..+.+..++++||..+..
T Consensus 107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred HHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 44444444444666779999999999999999887655 5566555556788888876544
|
| >d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Formate dehydrogenase N, iron-sulfur (beta) subunit species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=7.2e-07 Score=86.64 Aligned_cols=45 Identities=36% Similarity=0.791 Sum_probs=38.0
Q ss_pred hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEe
Q 040300 24 ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 24 ~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
.|.+.||+.- +...++++..+|++++|||||.|+..|||+||.+.
T Consensus 106 ~Cv~vCPt~A-----a~~~~e~G~V~id~~~CiGC~~C~~ACPyga~~~~ 150 (244)
T d1kqfb1 106 GCLKACPSAG-----AIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLN 150 (244)
T ss_dssp HHHHHCCSTT-----SEEEETTSCEEECGGGCCCCCHHHHHCTTCCCEEE
T ss_pred cccccccccc-----eeEEcCCCcEEEccccccchhhHhhcCCCCCcEec
Confidence 4999999753 23455579999999999999999999999999764
|
| >d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain V species: Desulfovibrio africanus [TaxId: 873]
Probab=97.81 E-value=3.6e-06 Score=72.17 Aligned_cols=68 Identities=24% Similarity=0.500 Sum_probs=46.2
Q ss_pred ceEEEEEeCCCCCcccccchhhcccCccccCc---------------eEEEEcC-----CCCceeecccccccccccccc
Q 040300 5 LTRIAIVSSDRCKPKKCRQECKKSCPVVKTGK---------------LCIEVTP-----AAKIAFISEELCIGCGICVKK 64 (605)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---------------~~~~~~~-----~~~~~~i~~~~c~~~g~~~~~ 64 (605)
...+.|+|.|+|- .| ..|...||..-... ....... ......|+++.|+|||.|+..
T Consensus 10 a~~~pv~d~~~Ci--~C-g~C~~vCP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~CG~C~~~ 86 (117)
T d2c42a5 10 AINVPQWVPENCI--QC-NQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGNCADI 86 (117)
T ss_dssp CSEEEEECTTTCC--CC-CHHHHHCSSCCEEEEEECGGGGTTCCTTCCCEECCSGGGTTCEEEEEECTTTCCCCCHHHHH
T ss_pred CccCCEeCchhcC--CC-cChhhhCchhheeeeecCHHHhhhhhhhccccccccccccccceeeeeccccCCccCchhhh
Confidence 4678999999994 78 46999999543210 1111100 011344788999999999999
Q ss_pred CCcc--eEEEecC
Q 040300 65 CPFE--AIQIINL 75 (605)
Q Consensus 65 cp~~--ai~i~nl 75 (605)
||.+ ||...-+
T Consensus 87 CP~~~~ai~m~~~ 99 (117)
T d2c42a5 87 CPPKEKALVMQPL 99 (117)
T ss_dssp CSSSSCSEEEEEG
T ss_pred cCCCcCccccccc
Confidence 9987 7776544
|
| >d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: NADH-quinone oxidoreductase chain 9, Nqo9 species: Thermus thermophilus [TaxId: 274]
Probab=97.81 E-value=3.7e-06 Score=75.72 Aligned_cols=55 Identities=38% Similarity=0.757 Sum_probs=39.8
Q ss_pred eCCCCCcccccchhhcccCccccCceEEEEcCC--------------CCceeeccccccccccccccCCcceEEEec
Q 040300 12 SSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPA--------------AKIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--------------~~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
|.|||- .| .-|.+.||..- |.+... .....|+...|++||.||..||++||...+
T Consensus 24 ~~ekCI--~C-~~C~~~CP~~~-----i~~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~CG~Cve~CPt~AI~~~~ 92 (154)
T d2fug91 24 GLEKCI--GC-SLCAAACPAYA-----IYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGY 92 (154)
T ss_dssp SCBSCC--CC-THHHHHCSSCC-----EEEEEEECCSSSCSBSSSEEEEEEEEETTTCCCCTHHHHHCSSSCEEECS
T ss_pred CcccCc--CC-CcHHhhcCCcc-----eeccccccccccccccccccceeEEeccccCCCCCCchhhCCCCeEeccC
Confidence 456774 66 78999999643 322210 012358999999999999999999998765
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=2e-05 Score=75.75 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhcC-CcEEEEEecCHhHHH
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQ-VVRSLLRP-NSYVIVVEHDLSVLD 280 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~-~i~~l~~~-g~tvivvsHdl~~l~ 280 (605)
.|.+|+.-+.-.+.+..++|+||+..+=++.....++. ++..|... +..+|++||..+...
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred HHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence 44455444444566677999999999999998887765 46677554 567889999765543
|
| >d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Respiratory nitrate reductase 1 beta chain species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=6.2e-06 Score=87.63 Aligned_cols=49 Identities=27% Similarity=0.691 Sum_probs=41.6
Q ss_pred ccc-chhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEe
Q 040300 20 KCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 20 ~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
.|. --|.+.||.. +|..++++++..|+++.|||||.||..|||+|+.+.
T Consensus 186 hC~~~~C~~~CP~g-----Ai~~~~e~G~v~id~~~CigC~~C~~aCPy~~~~~~ 235 (509)
T d1y5ib1 186 HCLNPACVATCPSG-----AIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFN 235 (509)
T ss_dssp CCSSCHHHHHCTTC-----CEEEETTTCCEEECTTTCCCCCCHHHHCTTCCEEEE
T ss_pred CCCCchhhhhcCcC-----ceEEecCCCcEEEchhhccchHHHHhhCCCCCeEec
Confidence 454 3599999973 677777779999999999999999999999999765
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.66 E-value=0.00016 Score=70.23 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=80.1
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHh------hhccCCCC
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ------KIRDSYTH 444 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~------~~~~~~~~ 444 (605)
+.+|+++.|.|+.|+|||||+.-|+--.--. ...++.|+.-+ ++..+.... .+......
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~---------~g~~v~~~s~E------~~~~~~~~r~~~~~~~~~~~~~~ 96 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---------MGKKVGLAMLE------ESVEETAEDLIGLHNRVRLRQSD 96 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHHHHHHT---------SCCCEEEEESS------SCHHHHHHHHHHHHTTCCGGGCH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhh---------cccceeEeeec------cchhhHHhHHHHHhhcCCchhhc
Confidence 6777999999999999999988776311001 12245555422 233332211 00000000
Q ss_pred H--------HHHHHHHhhc-CCchh-hccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC--------HHHHHHH
Q 040300 445 P--------QFVSDVMKPL-LIEQL-MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD--------SEQRIVA 506 (605)
Q Consensus 445 ~--------~~~~~~l~~l-~l~~~-~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD--------~~~~~~l 506 (605)
. ....++++.+ +...+ .......++..+.-...-...-..+|+++++|=- .-++ ......+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l-~~l~~~~~~~~~~~~~~~~ 175 (277)
T d1cr2a_ 97 SLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHI-SIVVSASGESDERKMIDNL 175 (277)
T ss_dssp HHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEE-EC----------CHHHHHH
T ss_pred ccccchhhhHHHHHHHHHhhccceeeeeccccchhHHHHHHHhhhhhhccCcceEEEccc-ccccccccccchhHHHHHH
Confidence 0 0112222221 11111 1112233343333222222234568999999932 1221 1334556
Q ss_pred HHHHHHHHhcCCcEEEEEecCH----------------H------HHHhhcCEEEEEeC
Q 040300 507 AKVIKRFILHAKKTAFVVEHDF----------------I------MATYLADRVIVYEG 543 (605)
Q Consensus 507 ~~~l~~l~~~~g~tiivvsHD~----------------~------~~~~~adrviv~~g 543 (605)
+..|++++.+.+.+|++++|=- . .+.+.||-++.+..
T Consensus 176 ~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 176 MTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp HHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred HHHHHHHhhhccccceeecccccccccccccccccchhhhcccccchhhhCcEEEEEEe
Confidence 7778888888899999999821 1 23456899888853
|
| >d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Chromatium vinosum [TaxId: 1049]
Probab=97.55 E-value=1.3e-05 Score=63.83 Aligned_cols=27 Identities=33% Similarity=0.781 Sum_probs=22.9
Q ss_pred eeeccccccccccccccCCcceEEEec
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
|+|..+.|+|||.|+..|||+||++.+
T Consensus 1 a~iitd~Ci~Cg~C~~~CP~~AI~~~~ 27 (80)
T d1blua_ 1 ALMITDECINCDVCEPECPNGAISQGD 27 (80)
T ss_dssp CEEECTTCCCCCTTGGGCTTCCEEECS
T ss_pred CEEeCcCCCChHHHHHHChhcchhhcC
Confidence 456667899999999999999998654
|
| >d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Clostridium acidurici [TaxId: 1556]
Probab=97.49 E-value=1.6e-05 Score=58.48 Aligned_cols=27 Identities=41% Similarity=0.963 Sum_probs=22.6
Q ss_pred eeeccccccccccccccCCcceEEEec
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
|+|..+.|+|||.|++.||++||++.+
T Consensus 1 A~vi~e~C~~Cg~C~~~Cp~~ai~~~~ 27 (55)
T d2fdna_ 1 AYVINEACISCGACEPECPVNAISSGD 27 (55)
T ss_dssp CEEECTTCCCCCTTGGGCTTCCEECCS
T ss_pred CEEeCcCCCChhhHHHhcCccceEcCC
Confidence 355566899999999999999998654
|
| >d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Transhydroxylase beta subunit, BthL, N-terminal domain species: Pelobacter acidigallici [TaxId: 35816]
Probab=97.34 E-value=4.3e-05 Score=71.28 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=34.8
Q ss_pred hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEec
Q 040300 24 ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 24 ~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
.|.. ||. | .+.-++ +|..+|+++.|||||.|+..|||+||.+..
T Consensus 75 ~Cv~-~p~---~--A~~~~e-~G~V~id~~kCiGC~~C~~aCPy~a~~~~~ 118 (195)
T d1vlfn2 75 PCVA-KGN---G--AVYQRE-DGIVLIDPEKAKGKKELLDTCPYGVMYWNE 118 (195)
T ss_dssp HHHH-TTT---T--SEEECT-TSCEEECTTTTTTCGGGGGGCSSCCCEEET
T ss_pred cccc-ccc---c--eEEeec-ccceeeehhhccccchhhcCCCCCCeEccc
Confidence 4774 664 2 344444 699999999999999999999999998753
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00081 Score=64.73 Aligned_cols=145 Identities=13% Similarity=0.135 Sum_probs=74.0
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec-cccCcceeEeecCcCCCCCcCcHHHHHHh--hhccCCCCHHHH
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD-VEIPEFNVSYKPQKISPKFQSTVRHLLHQ--KIRDSYTHPQFV 448 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~-~~~~~~~i~y~~q~~~~~~~~tv~~~~~~--~~~~~~~~~~~~ 448 (605)
.+|+++.|.|+.|+|||||+-.|+--+. ..+...+ ......++-|+.-+. +..++... ...... .....
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~ia-~g~~~~~~~~~~~~~vl~~~~E~------~~~~~~~Rl~~~~~~~-~~~~~ 98 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAED------PPTAIHHRLHALGAHL-SAEER 98 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSS------CHHHHHHHHHHHHTTS-CHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHHH-cCCCcccccccCCCceEEEeccc------hHHHHHHHHHHHhhcc-Chhhh
Confidence 3478999999999999999876654221 0010000 011122455554321 22221110 111111 12222
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC-----CCHHHHHHHHHHHHHHHhcCCcEEEE
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY-----LDSEQRIVAAKVIKRFILHAKKTAFV 523 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~l~~~~g~tiiv 523 (605)
......+.+....+.....+. ...+.-......+++++++|-=++. -|......++..|++++...+.++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~ 175 (274)
T d1nlfa_ 99 QAVADGLLIQPLIGSLPNIMA---PEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF 175 (274)
T ss_dssp HHHHHHEEECCCTTSCCCTTS---HHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred hcccccceeccccCccchhHH---HHHHHHHHHhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceeh
Confidence 222333332222222222222 1222222234578999999955432 26667778888888888778999999
Q ss_pred EecC
Q 040300 524 VEHD 527 (605)
Q Consensus 524 vsHD 527 (605)
|.|-
T Consensus 176 v~H~ 179 (274)
T d1nlfa_ 176 LHHA 179 (274)
T ss_dssp EEEC
T ss_pred hhhc
Confidence 9993
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.29 E-value=0.00015 Score=70.36 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=22.9
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhc
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G 125 (605)
+++|+++.|.|++|+|||||+.-|+-
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999877763
|
| >d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Thauera aromatica [TaxId: 59405]
Probab=97.22 E-value=4.3e-05 Score=60.73 Aligned_cols=24 Identities=42% Similarity=0.931 Sum_probs=20.3
Q ss_pred eeccccccccccccccCCcceEEEe
Q 040300 49 FISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 49 ~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
+|+| .|+|||.|+..|||+||++.
T Consensus 3 ~itd-~Ci~Cg~C~~~CP~~AI~~~ 26 (80)
T d1rgva_ 3 YIND-DCTACDACVEECPNEAITPG 26 (80)
T ss_dssp CCCS-CCCCCCTTTTTCTTCCEECC
T ss_pred Eecc-cCcCCcCHHHHHHhCccccc
Confidence 4554 69999999999999999754
|
| >d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Archaeal ferredoxins domain: Ferredoxin species: Archaeon Sulfolobus sp. [TaxId: 2288]
Probab=97.19 E-value=6e-05 Score=62.80 Aligned_cols=32 Identities=31% Similarity=0.696 Sum_probs=28.2
Q ss_pred CceeeccccccccccccccCCcceEEEecCCc
Q 040300 46 KIAFISEELCIGCGICVKKCPFEAIQIINLPK 77 (605)
Q Consensus 46 ~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~ 77 (605)
....|+.+.|+|||.|++.||++||++.+.+.
T Consensus 36 ~~~~iD~~~Ci~Cg~C~~~CP~~ai~~~~~~~ 67 (103)
T d1xera_ 36 TIVGVDFDLCIADGSCINACPVNVFQWYDTPG 67 (103)
T ss_dssp SSEEEETTTCCCCCHHHHHCTTCCCEEEECTT
T ss_pred cEEEECHHHCcCcCcccccCcccceeeecccc
Confidence 45778999999999999999999999887664
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.07 E-value=0.0026 Score=59.72 Aligned_cols=153 Identities=13% Similarity=0.076 Sum_probs=83.9
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|.++.|.|++|+|||||+.-++-... .....+.|+.- +.+...+........+....
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~----------~~~~~~~~is~------e~~~~~~~~~~~~~~~~~~~-- 82 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVENAC----------ANKERAILFAY------EESRAQLLRNAYSWGMDFEE-- 82 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHH----------TTTCCEEEEES------SSCHHHHHHHHHTTSCCHHH--
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHH----------Hhccccceeec------cCCHHHHHHHHHHcCCChHH--
Confidence 5678889999999999999999876653311 01122445432 22333332211111111111
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC---CCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA---YLDSEQRIVAAKVIKRFILHAKKTAFVVE 525 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~~g~tiivvs 525 (605)
+...+.....+......+..+.-.......-..+|+++++|--++ +.+..........|.+++++.+.+++++.
T Consensus 83 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ 159 (242)
T d1tf7a2 83 ---MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTN 159 (242)
T ss_dssp ---HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ---HhhcCceEEEEeecchhhHHHHHHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 111222222333333344333322222223346899999986443 34666666666777777777899999988
Q ss_pred cCH----------HHHHhhcCEEEEEe
Q 040300 526 HDF----------IMATYLADRVIVYE 542 (605)
Q Consensus 526 HD~----------~~~~~~adrviv~~ 542 (605)
|-- ....++||-++.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 160 TSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp ECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred eeEeeccccccCCcceeeecceEEEEE
Confidence 731 12456788888775
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=1.6e-05 Score=72.33 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=26.8
Q ss_pred eeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 359 l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+.+..+++.+| +++|+|||||||||++.+|.-.+
T Consensus 15 ~~~~~i~f~~~------~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL------VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH------HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC------eEEEECCCCCCHHHHHHHHHHHh
Confidence 44556666665 78999999999999999997443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00016 Score=64.05 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.3
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999986543
|
| >d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Short-chain ferredoxins domain: Ferredoxin II species: Peptostreptococcus asaccharolyticus [TaxId: 1258]
Probab=96.98 E-value=0.00013 Score=53.48 Aligned_cols=24 Identities=38% Similarity=1.057 Sum_probs=20.0
Q ss_pred eeccccccccccccccCCcceEEE
Q 040300 49 FISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 49 ~i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
++..+.|++||.|++.||++||+.
T Consensus 2 y~i~d~C~~C~~C~~~CP~~ai~~ 25 (55)
T d1dura_ 2 YVINDSCIACGACKPECPVNCIQE 25 (55)
T ss_dssp EEECTTCCCCCCSGGGCTTCCEEC
T ss_pred eEeCccCcChhHHHhhCCcCeEeC
Confidence 334458999999999999999873
|
| >d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: 7-Fe ferredoxin domain: Photosystem I iron-sulfur protein PsaC species: Synechococcus elongatus [TaxId: 32046]
Probab=96.97 E-value=0.00012 Score=57.93 Aligned_cols=30 Identities=27% Similarity=0.774 Sum_probs=24.4
Q ss_pred eeeccccccccccccccCCcceEEEecCCc
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQIINLPK 77 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~ 77 (605)
++...+.|||||.||+.||++||++...+.
T Consensus 3 ~v~~~d~Ci~Cg~Cv~~Cp~~~i~~~~~~~ 32 (80)
T d1jb0c_ 3 TVKIYDTCIGCTQCVRACPTDVLEMVPWDG 32 (80)
T ss_dssp EEEEETTCCCCCHHHHHCTTCCCEEEECSS
T ss_pred ccccCCCCcCccCHHHhCCccceEeecccc
Confidence 344466999999999999999999876543
|
| >d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Fe-only hydrogenase larger subunit, N-domain species: Desulfovibrio desulfuricans [TaxId: 876]
Probab=96.97 E-value=6.1e-05 Score=60.48 Aligned_cols=28 Identities=39% Similarity=0.700 Sum_probs=24.1
Q ss_pred ceeeccccccccccccccCCcceEEEec
Q 040300 47 IAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 47 ~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
...|+++.|++||.|+..||++||.+.+
T Consensus 26 ~~~id~~~Ci~C~~Cv~~Cp~~ai~~~~ 53 (85)
T d1hfel2 26 FVQIDEAKCIGCDTCSQYCPTAAIFGEM 53 (85)
T ss_dssp SEEECTTTCCCCCHHHHHCTTCCCBCCT
T ss_pred eEEEcHHHCCCchhHHHHCCccCEEeec
Confidence 4568899999999999999999987654
|
| >d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: 7-Fe ferredoxin domain: Ferredoxin species: Thermus thermophilus [TaxId: 274]
Probab=96.91 E-value=0.00012 Score=57.60 Aligned_cols=27 Identities=37% Similarity=0.632 Sum_probs=23.5
Q ss_pred eeecccccccc--ccccccCCcceEEEec
Q 040300 48 AFISEELCIGC--GICVKKCPFEAIQIIN 74 (605)
Q Consensus 48 ~~i~~~~c~~~--g~~~~~cp~~ai~i~n 74 (605)
|+|.++.|++| |.|++.||++||++.+
T Consensus 1 P~vv~d~C~~C~~~~C~~~CP~~AI~~~~ 29 (77)
T d1h98a_ 1 PHVICEPCIGVKDQSCVEVCPVECIYDGG 29 (77)
T ss_dssp CEEECGGGTTTCCCHHHHHCTTCCEEECS
T ss_pred CEEeCccCCCcCCchhHHHCCCCceEccC
Confidence 57778899999 9999999999997553
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.90 E-value=0.00026 Score=62.99 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=26.1
Q ss_pred CCCCCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 98 PVPRPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 98 ~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
|...+|-++.|+|.+||||||+.+.|+-.+
T Consensus 1 ~~~~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 1 PRATQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp CTTTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 334689999999999999999999999554
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.88 E-value=0.00028 Score=62.80 Aligned_cols=26 Identities=35% Similarity=0.602 Sum_probs=23.5
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.|.++.|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999999765
|
| >d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin I species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]
Probab=96.82 E-value=0.00015 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.631 Sum_probs=21.9
Q ss_pred CceeeccccccccccccccCCcceE
Q 040300 46 KIAFISEELCIGCGICVKKCPFEAI 70 (605)
Q Consensus 46 ~~~~i~~~~c~~~g~~~~~cp~~ai 70 (605)
++.+|+++.|||||.|+..||...+
T Consensus 2 ~~~~VD~~~CigCg~C~~~cP~~f~ 26 (64)
T d1fxra_ 2 RKFYVDQDECIACESCVEIAPGAFA 26 (64)
T ss_dssp CEEEECTTTCCCCCHHHHHCTTTEE
T ss_pred CeEEEchhhCccCCCccccCcCeEE
Confidence 5778999999999999999997544
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.80 E-value=0.00029 Score=64.04 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=23.3
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
|.++.|+||+|||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999987654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00028 Score=62.46 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
+++|+|++|||||||++.|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999986543
|
| >d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: 7-Fe ferredoxin domain: Ferredoxin species: Bacillus schlegelii [TaxId: 1484]
Probab=96.78 E-value=0.00023 Score=55.85 Aligned_cols=26 Identities=38% Similarity=0.834 Sum_probs=22.2
Q ss_pred eeecccccccc--ccccccCCcceEEEe
Q 040300 48 AFISEELCIGC--GICVKKCPFEAIQII 73 (605)
Q Consensus 48 ~~i~~~~c~~~--g~~~~~cp~~ai~i~ 73 (605)
|+|..+.|+|| |.|++.||++||+..
T Consensus 1 ayvv~~~C~~C~~g~C~~~CP~~Ai~~~ 28 (77)
T d1bc6a_ 1 AYVITEPCIGTKDASCVEVCPVDCIHEG 28 (77)
T ss_dssp CEECCSTTTTCCCCSSTTTCTTCCEEEC
T ss_pred CEEcCccCCCccCcchhhhCCCCCeecc
Confidence 45667789999 999999999999754
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.74 E-value=0.00033 Score=62.28 Aligned_cols=26 Identities=42% Similarity=0.474 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.|+++.|.|++||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999999875
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.73 E-value=0.00029 Score=64.10 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=23.9
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
|.++.|+||+||||||+++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 89999999999999999999987764
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.69 E-value=0.0065 Score=55.97 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=39.2
Q ss_pred cCCCEEEEecCCCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEecCHH---------HHHhhcCEEEEEe
Q 040300 484 KPADIYLIDEPSAYL----DSEQRIVAAKVIKRFILHAKKTAFVVEHDFI---------MATYLADRVIVYE 542 (605)
Q Consensus 484 ~~p~lllLDEPt~~L----D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~---------~~~~~adrviv~~ 542 (605)
.+|+++++|=-++-+ +.......+..+.++.++.+.|+++++|... ...+++|-++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 479999999766543 3343444444455555667899999888432 4556789988875
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.00043 Score=61.41 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=23.0
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+.++.|.||+||||||+.+.|+..+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
|
| >d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin I species: Desulfovibrio gigas [TaxId: 879]
Probab=96.63 E-value=0.00048 Score=50.83 Aligned_cols=52 Identities=27% Similarity=0.491 Sum_probs=36.5
Q ss_pred eCCCCCcccccchhhcccCccccCceEEEEcCCCCcee--eccccccccccccccCCcceEEE
Q 040300 12 SSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAF--ISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
..|+|- .| .-|...||-+ +.++++.++.+ ...+.|.+||.|++.||.+||+.
T Consensus 4 v~e~Ci--gC-g~C~~~CP~~------~~~~~~g~~~~~~~~~~~~~~c~~c~~~CP~~AIs~ 57 (58)
T d1fxda_ 4 VNDDCM--AC-EACVEICPDV------FEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVR 57 (58)
T ss_dssp ECTTCC--CC-CHHHHHCTTT------EEECSSSSSEEESCTTCCCHHHHHHHHHCTTCCEEE
T ss_pred ECccCc--Ch-hhHHHHcChh------heEcCCCCEEEEecCCCCcHHHHHHhhcCChhcEEC
Confidence 347775 46 5799999953 23333333333 35678999999999999999974
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.63 E-value=0.00053 Score=64.85 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=26.1
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
+|+..+++|++|+|||||+|.|.|...-..|.+
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCc
Confidence 699999999999999999999998765444544
|
| >d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Adenylylsulfate reductase B subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.61 E-value=0.00028 Score=62.66 Aligned_cols=26 Identities=31% Similarity=0.787 Sum_probs=24.1
Q ss_pred eeeccccccccc-----cccccCCcceEEEe
Q 040300 48 AFISEELCIGCG-----ICVKKCPFEAIQII 73 (605)
Q Consensus 48 ~~i~~~~c~~~g-----~~~~~cp~~ai~i~ 73 (605)
|+|+++.|+||| +||+.||++||.+.
T Consensus 2 ~~id~~~C~gCg~c~~~~C~~~CP~~ai~~~ 32 (149)
T d1jnrb_ 2 SFVNPEKCDGCKALERTACEYICPNDLMTLD 32 (149)
T ss_dssp EEECTTTCCSCCSSSSCHHHHHCTTSCEEEE
T ss_pred CEEcchhCCCCCCCCcchHHHhCCcccEEec
Confidence 689999999999 79999999999875
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.00018 Score=64.22 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=24.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
.+.|.||+|+|||||++.++..+.....
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~ 30 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGV 30 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 4789999999999999999998866543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.58 E-value=0.00053 Score=60.81 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.8
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+|-+|.|+|+.||||||+.+.|+-.+
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998554
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.0002 Score=63.95 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=24.9
Q ss_pred cEEEEECCCCChHHHHHHHHhcCCCCCCc
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKLKPNLG 132 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l~p~~G 132 (605)
..+.|.|++|+|||||++.++..+....+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~ 30 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGV 30 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 35889999999999999999998866543
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.00053 Score=60.78 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=24.7
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+.+.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999765
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.0015 Score=62.75 Aligned_cols=46 Identities=7% Similarity=0.155 Sum_probs=32.9
Q ss_pred HHccCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHhhcC-CcEEEEEecC
Q 040300 230 VAVQNAEIYMFDEPSSY-----LDVKQRLKAAQVVRSLLRP-NSYVIVVEHD 275 (605)
Q Consensus 230 aL~~~p~vlllDEPts~-----LD~~~r~~~~~~i~~l~~~-g~tvivvsHd 275 (605)
....+|+++++|--++. -|......++..|+.+++. +.+||+|.|-
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 34579999999944322 2555666677777777654 8999999994
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.49 E-value=0.00062 Score=60.67 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
+++|+|++|||||||+..|+..++.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999988877654
|
| >d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain V species: Desulfovibrio africanus [TaxId: 873]
Probab=96.49 E-value=0.00043 Score=58.68 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=27.9
Q ss_pred CceeeccccccccccccccCCcceEEEecCCc
Q 040300 46 KIAFISEELCIGCGICVKKCPFEAIQIINLPK 77 (605)
Q Consensus 46 ~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~ 77 (605)
..|+++++.|||||.|+..||..+|+..-+..
T Consensus 12 ~~pv~d~~~Ci~Cg~C~~vCP~~~i~~~~~~~ 43 (117)
T d2c42a5 12 NVPQWVPENCIQCNQCAFVCPHSAILPVLAKE 43 (117)
T ss_dssp EEEEECTTTCCCCCHHHHHCSSCCEEEEEECG
T ss_pred cCCEeCchhcCCCcChhhhCchhheeeeecCH
Confidence 46899999999999999999999998766553
|
| >d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Tungsten containing formate dehydrogenase, small subunit species: Desulfovibrio gigas [TaxId: 879]
Probab=96.47 E-value=0.00038 Score=65.58 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=38.1
Q ss_pred hhhcccCccccCceEEEEcCCCCceeeccc--cccccccccccCCcceEEEe
Q 040300 24 ECKKSCPVVKTGKLCIEVTPAAKIAFISEE--LCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 24 ~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~--~c~~~g~~~~~cp~~ai~i~ 73 (605)
.|.+.||+...+ .|..++.++...++++ .|+||+.|+..|||+|++..
T Consensus 79 pC~~~Cp~~~~~--~~v~~~~~G~v~~~~~~~~c~gc~~C~~aCPy~~~~~~ 128 (214)
T d1h0hb_ 79 PCKATADMEDES--AIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKV 128 (214)
T ss_dssp HHHHHHTTTCTT--SEEECTTTCCEEECGGGGGCSCHHHHHHHCTTCCCEEC
T ss_pred cccccccccCCc--eEEEEeCCCeEEEecccccccCcceecccCCCCCceec
Confidence 699999986654 4556666676777777 59999999999999998764
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.46 E-value=0.00058 Score=60.75 Aligned_cols=25 Identities=24% Similarity=0.614 Sum_probs=22.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
..|+|.||.|||||||++.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998664
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.45 E-value=0.00067 Score=60.34 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=22.1
Q ss_pred cEEEEECCCCChHHHHHHHHhcCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
..++|.|+.|||||||++.|+-.+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999865
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.40 E-value=0.00086 Score=63.37 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=24.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCCCeeee
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i 405 (605)
..++++|++|+|||||++.|.|...-..|.+
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhccCc
Confidence 5789999999999999999998766555554
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.39 E-value=0.00079 Score=59.94 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.6
Q ss_pred cEEEEECCCCChHHHHHHHHhcCCCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKLKP 129 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l~p 129 (605)
.+++|+|.+|||||||++-|...+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999988877654
|
| >d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Dihydropyrimidine dehydrogenase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.36 E-value=0.00015 Score=66.09 Aligned_cols=29 Identities=41% Similarity=0.828 Sum_probs=25.6
Q ss_pred CceeeccccccccccccccCCcceEEEec
Q 040300 46 KIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 46 ~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
.+|+|++++|++||.|+..||++||..+.
T Consensus 100 ~va~id~~~Ci~C~~C~~~Cp~~ai~~i~ 128 (173)
T d1gtea5 100 VVAVIDEEMCINCGKCYMTCNDSGYQAIQ 128 (173)
T ss_dssp EEEEECTTTCCCCCHHHHHHHHHSCSCEE
T ss_pred eEEEEEchhCCCchHHHHhhhhCCEEEEE
Confidence 46889999999999999999999986554
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.00077 Score=58.58 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37788999999999999998755
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.36 E-value=0.00083 Score=60.70 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+|||.|+.|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999986543
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.34 E-value=0.0048 Score=58.94 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
-+.|.||.|+|||||++.|+..+
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 48899999999999999999764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.33 E-value=0.01 Score=55.08 Aligned_cols=31 Identities=42% Similarity=0.472 Sum_probs=25.9
Q ss_pred cCCCCCCCcEEEEECCCCChHHHHHHHHhcC
Q 040300 96 RLPVPRPGQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 96 ~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
++|..+...++.++||||+||||.+-=|+-.
T Consensus 3 ~lp~~~~~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 3 RLPVLKDRNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp CCCCCCSSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4677778889999999999999988777744
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.31 E-value=0.00099 Score=58.88 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=23.3
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
..+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999998874
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.28 E-value=0.001 Score=57.76 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=19.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHc
Q 040300 375 QIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~G 396 (605)
.++.|.|++|||||||++.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998753
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.00037 Score=62.80 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.2
Q ss_pred cEEEEECCCCChHHHHHHHHhcCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++.|+|+|||||||++.+|.-.+
T Consensus 25 ~~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 25 LVTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999997554
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.22 E-value=0.0011 Score=59.01 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
.+|+|.|+.||||||+++.|+-.+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999866543
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.22 E-value=0.0011 Score=58.27 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=21.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.++.|.||.||||||+++.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999997653
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.22 E-value=0.0012 Score=58.25 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.6
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
..++.|.|++||||||+.+.|+-.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998873
|
| >d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: NADH-quinone oxidoreductase chain 9, Nqo9 species: Thermus thermophilus [TaxId: 274]
Probab=96.21 E-value=0.00056 Score=60.90 Aligned_cols=25 Identities=40% Similarity=0.850 Sum_probs=22.0
Q ss_pred ccccccccccccccCCcceEEEecC
Q 040300 51 SEELCIGCGICVKKCPFEAIQIINL 75 (605)
Q Consensus 51 ~~~~c~~~g~~~~~cp~~ai~i~nl 75 (605)
+++.|||||+|++.||.+||.+..-
T Consensus 24 ~~ekCI~C~~C~~~CP~~~i~~~~~ 48 (154)
T d2fug91 24 GLEKCIGCSLCAAACPAYAIYVEPA 48 (154)
T ss_dssp SCBSCCCCTHHHHHCSSCCEEEEEE
T ss_pred CcccCcCCCcHHhhcCCcceecccc
Confidence 5679999999999999999987653
|
| >d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Fe-only hydrogenase, second domain species: Clostridium pasteurianum [TaxId: 1501]
Probab=96.20 E-value=0.0003 Score=55.84 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=25.6
Q ss_pred EcCCCCceeeccccccccccccccCCcceEE
Q 040300 41 VTPAAKIAFISEELCIGCGICVKKCPFEAIQ 71 (605)
Q Consensus 41 ~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~ 71 (605)
++..+..-+|+++.||+||.|+..||..++.
T Consensus 7 id~~~~~i~iD~~kCI~C~~Cv~aCp~~~~~ 37 (83)
T d3c8ya3 7 VDERSKSLTVDRTKCLLCGRCVNACGKNTET 37 (83)
T ss_dssp EECCSSSEEEEGGGCCCCCHHHHHHHHHHSC
T ss_pred ccCCCCCEEEchhHCCCCchHHHhhcccccc
Confidence 4555566789999999999999999977664
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.19 E-value=0.00057 Score=64.88 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
.|+...++|++|+|||||+|.|.|...-..|.+
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccc
Confidence 689999999999999999999999765444544
|
| >d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin A species: Thermotoga maritima [TaxId: 2336]
Probab=96.19 E-value=0.00058 Score=50.47 Aligned_cols=24 Identities=33% Similarity=0.833 Sum_probs=20.2
Q ss_pred ceeeccccccccccccccCCcceE
Q 040300 47 IAFISEELCIGCGICVKKCPFEAI 70 (605)
Q Consensus 47 ~~~i~~~~c~~~g~~~~~cp~~ai 70 (605)
+..|+.+.|+|||.|++.||..++
T Consensus 2 rv~iD~~~C~~Cg~C~~~cP~~~~ 25 (59)
T d1vjwa_ 2 KVRVDADACIGCGVCENLCPDVFQ 25 (59)
T ss_dssp BCEECTTTCCCCCHHHHHCTTTEE
T ss_pred EEEEeHHHCCCCCCChHhCchheE
Confidence 357888999999999999996544
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.19 E-value=0.001 Score=60.10 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++||-|+.|||||||.+.|+-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.16 E-value=0.0013 Score=58.10 Aligned_cols=26 Identities=38% Similarity=0.566 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
|=.+.|.||.||||||+.+.|+-.+.
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 44689999999999999999987654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.13 E-value=0.0093 Score=55.52 Aligned_cols=93 Identities=18% Similarity=0.283 Sum_probs=45.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhh
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKP 454 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 454 (605)
-+++++||+|+||||.+-=||-.++ . ...+++.+.-+... ..-+.+ ...+.+.
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~~~-~---------~g~kV~lit~Dt~R--~ga~eQ---------------L~~~a~~ 65 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYFYK-K---------KGFKVGLVGADVYR--PAALEQ---------------LQQLGQQ 65 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHHHH-H---------TTCCEEEEECCCSS--HHHHHH---------------HHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-H---------CCCceEEEEeeccc--cchhHH---------------HHHhccc
Confidence 4799999999999998766664332 1 12346666533211 011111 1223333
Q ss_pred cCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040300 455 LLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL 498 (605)
Q Consensus 455 l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L 498 (605)
+++.-..-....++.- -.+=++..+...+.+++|+| |+|.
T Consensus 66 l~v~~~~~~~~~~~~~--~~~~a~~~~~~~~~d~IlID--TaGr 105 (211)
T d1j8yf2 66 IGVPVYGEPGEKDVVG--IAKRGVEKFLSEKMEIIIVD--TAGR 105 (211)
T ss_dssp HTCCEECCTTCCCHHH--HHHHHHHHHHHTTCSEEEEE--CCCS
T ss_pred cCcceeecccchhhhH--HHHHHHHHhhccCCceEEEe--cCCc
Confidence 4443222222333321 11225666677789999999 7775
|
| >d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Respiratory nitrate reductase 1 beta chain species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0012 Score=69.50 Aligned_cols=59 Identities=24% Similarity=0.467 Sum_probs=47.2
Q ss_pred eEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeecccccccc---------ccccccCCcceEEEecCC
Q 040300 6 TRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGC---------GICVKKCPFEAIQIINLP 76 (605)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~---------g~~~~~cp~~ai~i~nl~ 76 (605)
.-|.+||.|+|. -| ..|..+||.. .+.++...+++ +.|+.| +.||..||+.||.+-++-
T Consensus 207 ~G~v~id~~~Ci--gC-~~C~~aCPy~-----~~~~~~~~~~~----~KC~~C~~r~~~G~~paCv~~Cp~~A~~~g~~~ 274 (509)
T d1y5ib1 207 DGIVLIDQDKCR--GW-RMCITGCPYK-----KIYFNWKSGKS----EKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLL 274 (509)
T ss_dssp TCCEEECTTTCC--CC-CCHHHHCTTC-----CEEEETTTTEE----EECCTTHHHHTTTCCCHHHHTCTTCCEEEEEEE
T ss_pred CCcEEEchhhcc--ch-HHHHhhCCCC-----CeEecCCCCce----eecccchhHHhcCCCChhhhhCcHhhhhhchhc
Confidence 357899999996 58 7899999974 46677766655 379999 349999999999887764
|
| >d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin I species: Desulfovibrio gigas [TaxId: 879]
Probab=96.10 E-value=0.00068 Score=49.97 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=18.7
Q ss_pred eeeccccccccccccccCCcceEE
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQ 71 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~ 71 (605)
|+..++.|||||.|+..||-.++.
T Consensus 1 Pv~v~e~CigCg~C~~~CP~~~~~ 24 (58)
T d1fxda_ 1 PIEVNDDCMACEACVEICPDVFEM 24 (58)
T ss_dssp CEEECTTCCCCCHHHHHCTTTEEE
T ss_pred CeeECccCcChhhHHHHcChhheE
Confidence 345556899999999999965553
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.10 E-value=0.0015 Score=57.87 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+|-.+.|.|+.||||||+.+.|+-.+
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999999765
|
| >d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Transhydroxylase beta subunit, BthL, N-terminal domain species: Pelobacter acidigallici [TaxId: 35816]
Probab=96.08 E-value=0.0013 Score=60.76 Aligned_cols=59 Identities=17% Similarity=0.405 Sum_probs=47.5
Q ss_pred EEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeecccccccc----------c---cccccCCcceEEEe
Q 040300 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGC----------G---ICVKKCPFEAIQII 73 (605)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~----------g---~~~~~cp~~ai~i~ 73 (605)
=|.+||.|+|- -| ..|...||.. .|.+++..+++ +.|..| | .||+.||.+||...
T Consensus 90 G~V~id~~kCi--GC-~~C~~aCPy~-----a~~~~~~~~~~----~KC~~C~~r~~~~~~~g~~PaCv~~Cp~~a~~f~ 157 (195)
T d1vlfn2 90 GIVLIDPEKAK--GK-KELLDTCPYG-----VMYWNEEENVA----QKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFL 157 (195)
T ss_dssp SCEEECTTTTT--TC-GGGGGGCSSC-----CCEEETTTTEE----ECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEE
T ss_pred cceeeehhhcc--cc-chhhcCCCCC-----CeEcccccCCc----cccCcchhhhhccccccchhhhhhhCcHhheecC
Confidence 47899999996 48 6899999984 56788776655 378888 2 79999999999987
Q ss_pred cCCc
Q 040300 74 NLPK 77 (605)
Q Consensus 74 nl~~ 77 (605)
|.|.
T Consensus 158 ~~~~ 161 (195)
T d1vlfn2 158 KTTP 161 (195)
T ss_dssp EECH
T ss_pred CCCh
Confidence 7664
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0015 Score=60.88 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=22.5
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+|.++.|+||+|+|||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 36789999999999999999887654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.06 E-value=0.0015 Score=58.07 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=22.2
Q ss_pred cEEEEECCCCChHHHHHHHHhcCCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
.+++|.|+.||||||+++.|+-.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999986553
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.06 E-value=0.0013 Score=57.85 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=19.3
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+.|+||.||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999997543
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.05 E-value=0.0014 Score=56.78 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.1
Q ss_pred cEEEEECCCCChHHHHHHHHhc
Q 040300 104 QVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G 125 (605)
+++.|.|++||||||+++-|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999997753
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0013 Score=56.91 Aligned_cols=23 Identities=48% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999999765
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.04 E-value=0.0009 Score=60.49 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.3
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+|-+|.|+|+.||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.04 E-value=0.0026 Score=59.75 Aligned_cols=58 Identities=12% Similarity=0.005 Sum_probs=36.5
Q ss_pred cCCCEEEEeCCCCC---CCHHHHHHHHHHHHHhh-cCCcEEEEEecCH----------hHHHhhcCEEEEEe
Q 040300 233 QNAEIYMFDEPSSY---LDVKQRLKAAQVVRSLL-RPNSYVIVVEHDL----------SVLDYLSDFICCLY 290 (605)
Q Consensus 233 ~~p~vlllDEPts~---LD~~~r~~~~~~i~~l~-~~g~tvivvsHdl----------~~l~~~~D~i~vl~ 290 (605)
.+|+++++|--++. .+..+.......+..++ +.+.+++++.|-- ..+.+++|.|+.|+
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 57899999954433 35555444455544444 4588989888732 12445788887774
|
| >d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: 7-Fe ferredoxin domain: Ferredoxin species: Azotobacter vinelandii [TaxId: 354]
Probab=96.04 E-value=0.00086 Score=55.81 Aligned_cols=26 Identities=35% Similarity=0.782 Sum_probs=21.7
Q ss_pred eeecccccccc--ccccccCCcceEEEe
Q 040300 48 AFISEELCIGC--GICVKKCPFEAIQII 73 (605)
Q Consensus 48 ~~i~~~~c~~~--g~~~~~cp~~ai~i~ 73 (605)
|+|..+.|+|| |.|+..||++||+..
T Consensus 1 ayvi~~~C~~C~~~~C~~~CP~~ai~~~ 28 (106)
T d7fd1a_ 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEG 28 (106)
T ss_dssp CEEECGGGTTTCCCHHHHHCTTCCEEEC
T ss_pred CEEcCccCCCCCCCccccccCCCccccc
Confidence 35556689999 899999999999754
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0012 Score=59.61 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.|-++.|+|+.||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.93 E-value=0.0017 Score=57.01 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=21.6
Q ss_pred cEEEEECCCCChHHHHHHHHhcCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++.|.|+.||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999999765
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.0082 Score=57.57 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.9
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCC
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
..-+.|.||.|+|||++++.|+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc
Confidence 3467899999999999999999765
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0019 Score=59.68 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+|||.|+.|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999987654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.85 E-value=0.017 Score=53.67 Aligned_cols=24 Identities=42% Similarity=0.411 Sum_probs=16.0
Q ss_pred CCcEEEEECCCCChHHHHHHHHhc
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G 125 (605)
.-.++.++||+|+||||.+==|+-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999998766663
|
| >d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 species: Thermus thermophilus [TaxId: 274]
Probab=95.84 E-value=0.00049 Score=61.07 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=37.9
Q ss_pred EEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceee----ccccccccccccccCCcceEE
Q 040300 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFI----SEELCIGCGICVKKCPFEAIQ 71 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i----~~~~c~~~g~~~~~cp~~ai~ 71 (605)
++|.+||- .| .-|+++|+-+. |...+.+........| ...-|+.||.||..||.+||.
T Consensus 80 ~~d~~kCI--~C-~rCvr~C~ev~-g~~~l~~~~rG~~~~i~~~~~~~~c~~cG~Cv~vCPtGAL~ 141 (151)
T d2fug34 80 ILDRERCI--HC-KRCVRYFEEVP-GDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALL 141 (151)
T ss_dssp CEECSCCC--CC-CHHHHHHHHTT-CCCCCCCBSCGGGCBCCCSSTTCCSSCCTHHHHHCSSSSSB
T ss_pred EecCCCCC--cC-chHHhhhhhcc-CCceEEEeccccceEEccCCCCCCChhhcCHHhcCcccccc
Confidence 56778884 67 78999998332 2223333332222222 234599999999999999984
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.83 E-value=0.002 Score=60.30 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.83 E-value=0.0018 Score=58.93 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++|+|+.|+|||||++.|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999986
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0023 Score=59.47 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.|.++.|+||+|+|||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 38899999999999999999987654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.79 E-value=0.002 Score=56.69 Aligned_cols=23 Identities=48% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+.|+|+.||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998543
|
| >d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Ferredoxin species: Bacillus thermoproteolyticus [TaxId: 1427]
Probab=95.78 E-value=0.00099 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.840 Sum_probs=19.5
Q ss_pred CceeeccccccccccccccCCc
Q 040300 46 KIAFISEELCIGCGICVKKCPF 67 (605)
Q Consensus 46 ~~~~i~~~~c~~~g~~~~~cp~ 67 (605)
+..+|++++|||||.|+..||.
T Consensus 2 ~~v~VD~~~CigCg~C~~~cP~ 23 (81)
T d1iqza_ 2 KYTIVDKETCIACGACGAAAPD 23 (81)
T ss_dssp CEEEECTTTCCCCSHHHHHCTT
T ss_pred cEEEEeHHHCcCcChHhHhCch
Confidence 3468999999999999999994
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.77 E-value=0.00091 Score=63.41 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=20.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCCCeeeee
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS 406 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~ 406 (605)
..++++|++|+|||||++.|.|...-..|.+.
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 47889999999999999999997665556553
|
| >d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Single 4Fe-4S cluster ferredoxin domain: Fe3S4-ferredoxin PF1909 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.72 E-value=0.0013 Score=49.61 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=20.0
Q ss_pred ceeeccccccccccccccCCcceE
Q 040300 47 IAFISEELCIGCGICVKKCPFEAI 70 (605)
Q Consensus 47 ~~~i~~~~c~~~g~~~~~cp~~ai 70 (605)
|-.|+.++|+|||.|+..||...+
T Consensus 3 ki~vD~~~Ci~Cg~C~~~CP~~~~ 26 (66)
T d1sj1a_ 3 KVSVDQDTCIGDAICASLCPDVFE 26 (66)
T ss_dssp EEEECTTTCCCCCHHHHHCTTTEE
T ss_pred EEEEeHHHCCCcChhhhhCCceEE
Confidence 446788899999999999997544
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.69 E-value=0.015 Score=55.24 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=20.1
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+.+.||.|+|||+|++.|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6799999999999999999754
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.0024 Score=58.10 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.7
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
|+|+||+|||||||++.|+-..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.67 E-value=0.0082 Score=57.78 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+..-+.|.||.|+|||+|++.|++.+
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 34458899999999999999999876
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.66 E-value=0.0027 Score=57.70 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|+.|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 38999999999999999999863
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0025 Score=58.87 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++||-|+.||||||+.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998665
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.58 E-value=0.0034 Score=56.96 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
-+|.|+||.||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998543
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.56 E-value=0.0028 Score=57.92 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
++|+||+|||||||++.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987543
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.53 E-value=0.0029 Score=56.04 Aligned_cols=22 Identities=50% Similarity=0.678 Sum_probs=19.7
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+.|+|+.||||||+.++|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.45 E-value=0.0038 Score=55.64 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.5
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
++.|.|++||||||+++.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987664
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.44 E-value=0.0033 Score=58.72 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
|++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 789999999999999999964
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.42 E-value=0.0036 Score=56.98 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++.|+||.||||||+.+.|+-.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998755
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.40 E-value=0.0029 Score=56.56 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
-++|+|+.|+|||||++.|.|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999963
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.37 E-value=0.0027 Score=56.28 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
.--.++|||+.|+|||||++.|.|...
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344688999999999999999988653
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.35 E-value=0.0024 Score=57.55 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.3
Q ss_pred EEEECCCCChHHHHHHHHhcCC
Q 040300 106 LGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 106 ~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+||+|+.++|||||++.|+|.-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998853
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.35 E-value=0.005 Score=55.20 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
..+=.+||+|..|+|||||++.|.|.-
T Consensus 6 ~~~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 6 TDAIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 344578999999999999999999853
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.34 E-value=0.0034 Score=55.65 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=20.4
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.++|+|+.|+|||||++.|.+-..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999988643
|
| >d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Formate dehydrogenase N, iron-sulfur (beta) subunit species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.0024 Score=61.03 Aligned_cols=58 Identities=29% Similarity=0.615 Sum_probs=46.3
Q ss_pred EEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeecccccccc------c---cccccCCcceEEEecCC
Q 040300 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGC------G---ICVKKCPFEAIQIINLP 76 (605)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~------g---~~~~~cp~~ai~i~nl~ 76 (605)
=|.+||.|+|- -| ..|...||.+ .|.+++.++++. .|..| | .||+.||.+||.+-++.
T Consensus 123 G~V~id~~~Ci--GC-~~C~~ACPyg-----a~~~~~~~~~~~----KC~~C~~r~~~G~~PaCv~~CP~~Al~fG~~~ 189 (244)
T d1kqfb1 123 GIVDFQSENCI--GC-GYCIAGCPFN-----IPRLNKEDNRVY----KCTLCVDRVSVGQEPACVKTCPTGAIHFGTKK 189 (244)
T ss_dssp SCEEECGGGCC--CC-CHHHHHCTTC-----CCEEETTTTEEE----CCCTTHHHHTTTCCCHHHHHCTTSCEEEEEHH
T ss_pred CcEEEcccccc--ch-hhHhhcCCCC-----CcEeccccCcce----ecccchhhhcCCCCcchHHhcccCCEEEecHH
Confidence 47899999995 47 6799999985 456777666553 79888 3 89999999999988754
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.32 E-value=0.0037 Score=55.64 Aligned_cols=23 Identities=48% Similarity=0.541 Sum_probs=19.5
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+.|+|+.||||||+.+.||-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999998543
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.31 E-value=0.0043 Score=55.05 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++|+|+.|+|||||++.|+|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0046 Score=55.93 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHcC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl 397 (605)
..+.|+||+|+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998753
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.30 E-value=0.0038 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999853
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.29 E-value=0.0041 Score=55.53 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
|+|+|+.|+|||||++.|.|..
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999853
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.0042 Score=55.22 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
+++|+|..|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999986
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.27 E-value=0.0052 Score=55.83 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+-.++.|+||.||||||+.+.|+-.+
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456689999999999999999999765
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.27 E-value=0.004 Score=56.65 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.1
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
..+.++.|+||.||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998644
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.004 Score=56.51 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=19.9
Q ss_pred EEEECCCCChHHHHHHHHhcCC
Q 040300 106 LGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 106 ~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+.|+||+|||||||++.|+-..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997765
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.0043 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0044 Score=56.12 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
++.|+||.||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998543
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.21 E-value=0.0045 Score=56.06 Aligned_cols=21 Identities=38% Similarity=0.601 Sum_probs=19.5
Q ss_pred EEEEEecCCCCHHHHHHHHHc
Q 040300 376 IIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~G 396 (605)
|+||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999964
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.21 E-value=0.0042 Score=54.95 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEECCCCChHHHHHHHHhcCC
Q 040300 106 LGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 106 ~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+.|+|+.||||||+.+.||-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999775
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.19 E-value=0.0041 Score=55.39 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+.|+|+.||||||+.+.||-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999998654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.19 E-value=0.042 Score=50.94 Aligned_cols=107 Identities=20% Similarity=0.162 Sum_probs=53.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhh
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKP 454 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 454 (605)
-+++++||||+||||.+-=||-.+. . ...+++.+.=+... ..-+. ....+.+.
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~~-~---------~~~kV~lit~Dt~R--~gA~e---------------QL~~~a~~ 64 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMFV-D---------EGKSVVLAAADTFR--AAAIE---------------QLKIWGER 64 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH-H---------TTCCEEEEEECTTC--HHHHH---------------HHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-H---------CCCceEEEeecccc--cchhH---------------HHHHHhhh
Confidence 4799999999999997755554332 1 12345555432110 00111 12223334
Q ss_pred cCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC-CCCCHHHHHHHHHHH
Q 040300 455 LLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS-AYLDSEQRIVAAKVI 510 (605)
Q Consensus 455 l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt-~~LD~~~~~~l~~~l 510 (605)
+++.-.......+++ .-.+-+.+.+...+-|++|+|=|= +..|.....++.++.
T Consensus 65 l~i~~~~~~~~~d~~--~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~ 119 (213)
T d1vmaa2 65 VGATVISHSEGADPA--AVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVH 119 (213)
T ss_dssp HTCEEECCSTTCCHH--HHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHH
T ss_pred cCccccccCCCCcHH--HHHHHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHH
Confidence 444422222222222 223344556667788999999654 334444444444433
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.19 E-value=0.0045 Score=54.81 Aligned_cols=22 Identities=45% Similarity=0.601 Sum_probs=19.2
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+.|+|+.||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998554
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.18 E-value=0.0042 Score=56.33 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.1
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCC
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
..++.|+||.||||||+.+.|+-.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.17 E-value=0.005 Score=54.58 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.|+|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999854
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.17 E-value=0.0055 Score=54.77 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=21.3
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+|+|+|..|+|||||++.|+|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.15 E-value=0.005 Score=55.06 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
+++|+|..|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999986
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.14 E-value=0.048 Score=50.27 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=19.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++.++||||+||||.+--||-.+
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999887777544
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.021 Score=54.51 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.1
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+.+.||.|+|||++++.|+..+
T Consensus 48 iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEeeCCCCCCccHHHHHHHHHc
Confidence 6799999999999999999765
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.13 E-value=0.0033 Score=56.34 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEECCCCChHHHHHHHHhcCC
Q 040300 106 LGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 106 ~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+||+|..|+|||||++.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999864
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.13 E-value=0.0051 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.0
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999997654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.13 E-value=0.0043 Score=56.12 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=19.8
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
++.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997543
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.0054 Score=54.45 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.7
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
+|+|+|..|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.0053 Score=53.56 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.6
Q ss_pred cEEEEECCCCChHHHHHHHHhcCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
=.++|+|+.|+|||||++.|.|.-
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999863
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.05 E-value=0.051 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCChHHHHHHHHhc
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G 125 (605)
+..+++|.|.-|+|||||++.+.-
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 466999999999999999998753
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.04 E-value=0.0054 Score=55.06 Aligned_cols=44 Identities=16% Similarity=0.028 Sum_probs=31.2
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATY 533 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~ 533 (605)
-..+|+| ..+++..+|..+.++.++. .....++++..+.+.+..
T Consensus 65 g~~vIiD--~t~~~~~~R~~~~~~a~~~--~~~~~~v~l~~~~e~~~~ 108 (172)
T d1yj5a2 65 GKRVVID--NTNPDVPSRARYIQCAKDA--GVPCRCFNFCATIEQARH 108 (172)
T ss_dssp TCCEEEE--SCCCSHHHHHHHHHHHHHH--TCCEEEEEECCCHHHHHH
T ss_pred CCCceee--CcCCCHHHHHHHHHHHHhc--CCCEEEEEeCCCHHHHHH
Confidence 3456788 5568999999888877764 335667777778876543
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.04 E-value=0.0055 Score=52.93 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=20.1
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+.|+|+.|+|||||++.|++-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.03 E-value=0.005 Score=56.09 Aligned_cols=22 Identities=45% Similarity=0.505 Sum_probs=19.3
Q ss_pred EEEECCCCChHHHHHHHHhcCC
Q 040300 106 LGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 106 ~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+.|+||+||||||+++.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5799999999999999987653
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.03 E-value=0.0033 Score=56.53 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
|||+|+.++|||||++.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998753
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.0055 Score=56.27 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.4
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
||+|.||.||||||+.+.|+--+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999986553
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.02 E-value=0.0056 Score=55.68 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
++.++|..|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998644
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.01 E-value=0.0054 Score=58.15 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=26.5
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
....+.|.||.|+|||||.+.|++.+..+.-.+
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i 63 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVI 63 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhcceEEE
Confidence 345688999999999999999999876544333
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.006 Score=55.12 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.1
Q ss_pred cEEEEECCCCChHHHHHHHHhcCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
..+.|+||+|+|||||++-|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999988654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.98 E-value=0.005 Score=54.76 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++.|.|++||||||+++.|+..+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999766
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.007 Score=54.48 Aligned_cols=30 Identities=37% Similarity=0.439 Sum_probs=25.9
Q ss_pred eceeecCeEEEEEecCCCCHHHHHHHHHcC
Q 040300 368 EGEFTDSQIIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 368 ~G~~~~geii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.|-+.+|+++.|.||.|+|||||+--++..
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 367888999999999999999998877653
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.97 E-value=0.077 Score=50.82 Aligned_cols=125 Identities=14% Similarity=0.191 Sum_probs=68.9
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+..|.++-|.||+|||||||.-.++....-. ...+.|+.-+... +.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~----------g~~v~yiDtE~~~----~~------------------ 99 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKA----------GGTCAFIDAEHAL----DP------------------ 99 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT----------TCCEEEEESSCCC----CH------------------
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHHhC----------CCEEEEEECCccC----CH------------------
Confidence 667888999999999999999997777643211 1224555433111 11
Q ss_pred HHHHhhcCCc--hhhccCcCcCChhHHHHHHHHHHHc--cCCCEEEEecCCCCC-------CHH------HHHHHHHHHH
Q 040300 449 SDVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCLG--KPADIYLIDEPSAYL-------DSE------QRIVAAKVIK 511 (605)
Q Consensus 449 ~~~l~~l~l~--~~~~~~~~~LSGGe~QRvaiA~aL~--~~p~lllLDEPt~~L-------D~~------~~~~l~~~l~ 511 (605)
++++.+|++ .+.-.++ .-+|++ +.++..|+ .+++++|+|==++.. |.. ..+.+.+.++
T Consensus 100 -~~a~~~Gvd~d~i~~~~~---~~~E~~-~~~~~~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr 174 (268)
T d1xp8a1 100 -VYARALGVNTDELLVSQP---DNGEQA-LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALR 174 (268)
T ss_dssp -HHHHHTTCCGGGCEEECC---SSHHHH-HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHH
T ss_pred -HHHHHhCCCchhEEEEcC---CCHHHH-HHHHHHHHhcCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHH
Confidence 122233333 1111112 224554 34555554 358999999887755 111 2223333343
Q ss_pred ---HHHhcCCcEEEEEecCHHH
Q 040300 512 ---RFILHAKKTAFVVEHDFIM 530 (605)
Q Consensus 512 ---~l~~~~g~tiivvsHD~~~ 530 (605)
.++.+.+.++|++.|-..-
T Consensus 175 ~l~~~~~~~~~~vi~tNQv~~~ 196 (268)
T d1xp8a1 175 KLTAILSKTGTAAIFINQVREK 196 (268)
T ss_dssp HHHHHHTTTCCEEEEEEEC---
T ss_pred HHHhhhhhcCCeEEEEeEEeec
Confidence 4445678899999886533
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.96 E-value=0.0055 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.|+|+.|+|||||++-|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.96 E-value=0.0055 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++|+|..|+|||||++.+.+-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998764
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.93 E-value=0.0064 Score=54.46 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|..|+|||||++.|+|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.91 E-value=0.0056 Score=55.38 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
++||.|..||||||+.++|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999963
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.90 E-value=0.0062 Score=52.89 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.0
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.++|+|..|+|||||++.+.+-..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 489999999999999999988643
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.89 E-value=0.0065 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
++.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998654
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.89 E-value=0.0063 Score=56.12 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.0
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+++|-||.||||||..+.|+--+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987553
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.86 E-value=0.0072 Score=54.53 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCHHHHHHHHHc
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~G 396 (605)
|=.+.|+||.||||||..+.|+-
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 34677999999999999999993
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.84 E-value=0.0067 Score=55.09 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+.+.++.|+||.||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.81 E-value=0.0049 Score=55.89 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.4
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+|+|-|+-||||||+++.|+..+
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998766
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.79 E-value=0.0069 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++.++|..||||||+.+.|+-.+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998543
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.76 E-value=0.0054 Score=58.13 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.1
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
.+.|.||.|||||||.+.|++.+..
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3779999999999999999997754
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.0072 Score=54.63 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++.|+||.||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.75 E-value=0.0067 Score=53.59 Aligned_cols=22 Identities=50% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEECCCCChHHHHHHHHhcCC
Q 040300 106 LGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 106 ~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+.|+|+.||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999765
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.75 E-value=0.0064 Score=60.43 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=26.3
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNL 131 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~ 131 (605)
.|..+.|.|+.||||||+++.|.+.++|+.
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred hCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 355689999999999999999999997754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.73 E-value=0.0066 Score=55.24 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++|+|+.|+|||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998763
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.72 E-value=0.0096 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++|+|+.|+|||||++.|.|..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999998864
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.71 E-value=0.0098 Score=55.17 Aligned_cols=27 Identities=37% Similarity=0.603 Sum_probs=21.9
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
..+.+++++||+|+||||.+==|+-.+
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999876666443
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.0074 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|+.|+|||||++.|.|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998853
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.63 E-value=0.008 Score=53.89 Aligned_cols=45 Identities=11% Similarity=0.036 Sum_probs=31.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHh
Q 040300 234 NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDY 281 (605)
Q Consensus 234 ~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~ 281 (605)
.-.-+|+| .++++..+|..+.++.++..- ...++++..+++.+..
T Consensus 64 ~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~-~~~~v~l~~~~e~~~~ 108 (172)
T d1yj5a2 64 QGKRVVID--NTNPDVPSRARYIQCAKDAGV-PCRCFNFCATIEQARH 108 (172)
T ss_dssp TTCCEEEE--SCCCSHHHHHHHHHHHHHHTC-CEEEEEECCCHHHHHH
T ss_pred CCCCceee--CcCCCHHHHHHHHHHHHhcCC-CEEEEEeCCCHHHHHH
Confidence 33457788 557888999888777766532 4567777778877653
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.0087 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.7
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+.|+||.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999998543
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.61 E-value=0.0078 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.7
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|+.|+|||||++.|.|..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999998854
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.61 E-value=0.02 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
-+.|.||.|+|||++++.++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 37899999999999999999864
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.60 E-value=0.0094 Score=53.73 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
+|-.+.|+||.||||||..+.|+-.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHH
Confidence 4678889999999999999999943
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.59 E-value=0.0083 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+.|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999997664
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.58 E-value=0.0083 Score=59.58 Aligned_cols=27 Identities=26% Similarity=0.629 Sum_probs=24.3
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCe
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDS 402 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~ 402 (605)
-+.|.|+-|||||||++.|++.++|+.
T Consensus 168 nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred CEEEEeeccccchHHHHHHhhhccccc
Confidence 478999999999999999999997754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.58 E-value=0.0051 Score=55.04 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
|||+|..++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999864
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.56 E-value=0.0063 Score=54.94 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++.|+||.||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999998654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.53 E-value=0.011 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.0
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|+.|+|||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.53 E-value=0.0097 Score=54.66 Aligned_cols=26 Identities=38% Similarity=0.482 Sum_probs=22.7
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+|.+|+|-|+-||||||+++.|+-.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.44 E-value=0.011 Score=54.80 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.2
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+|-+|+|-|+-||||||+++.|+..+.
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999987553
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.44 E-value=0.0089 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.8
Q ss_pred cEEEEECCCCChHHHHHHHHhcC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
=.++|+|..|+|||||++.|.|.
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999999985
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.42 E-value=0.0099 Score=53.14 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=19.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998544
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.41 E-value=0.0052 Score=54.55 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.3
Q ss_pred cEEEEECCCCChHHHHHHHHhcCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
=.++|+|..++|||||++.|.|.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999864
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.0097 Score=54.50 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=21.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+++|.||.||||||+.+.|+-.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999765
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.36 E-value=0.0089 Score=57.23 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=21.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++|+|..|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999974
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.36 E-value=0.01 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+.|+||.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999998643
|
| >d2gmha3 d.58.1.6 (A:483-584) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: ETF-QO domain-like domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.35 E-value=0.0052 Score=50.26 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=45.8
Q ss_pred CCceEEEEEeCCCCCccccc----chhhcccCccccCceEEEEc--CC--CCceeeccccccccccccccCCcceEEEe
Q 040300 3 DRLTRIAIVSSDRCKPKKCR----QECKKSCPVVKTGKLCIEVT--PA--AKIAFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~--~~--~~~~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
|....+-|-|.+.|. +.|- .-|.+|||-. +-++. ++ .++-.|+-+-|+-||-|-=|||++.|+-.
T Consensus 17 dQP~HL~ikd~~i~~-~~~~~~y~~Pc~r~CPAg-----VYE~~~~~~~~~~~l~In~~nCleC~tC~i~~p~~nI~W~ 89 (102)
T d2gmha3 17 DQPAHLTLKDDSVPV-NRNLSIYDGPEQRFCPAG-----VYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWV 89 (102)
T ss_dssp SSCCSEEESSTTHHH-HTHHHHHCCTHHHHCTTC-----CEEEEECSSTTCEEEEECGGGCCCCCHHHHHCTTCCEEEC
T ss_pred CCCceEEecCcchhh-hcccccccchheeeccce-----EEEEeecCCCCccEEEEEeCCceeeccceeeCCCCceEEE
Confidence 556677788877763 2232 3499999964 33332 22 22567889999999999999999998654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.35 E-value=0.0097 Score=54.71 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEEecCCCCHHHHHHHHHc
Q 040300 376 IIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~G 396 (605)
++||.|+.||||||+.++|.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999963
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.33 E-value=0.011 Score=52.05 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|..|+|||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.32 E-value=0.042 Score=55.88 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHH
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLD 280 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~ 280 (605)
--+|..+|=++||++++.|.. |..+. ....+.+..|..|+-+-|--+-..
T Consensus 217 ~~~l~~~lR~dPDvi~igEiR---d~~ta----~~a~~aa~tGhlV~tTlHa~~a~~ 266 (401)
T d1p9ra_ 217 ARGLRAILRQDPDVVMVGEIR---DLETA----QIAVQASLTGHLVMSTLHTNTAVG 266 (401)
T ss_dssp HHHHHHHGGGCCSEEEESCCC---SHHHH----HHHHHHHHTTCEEEEEECCSSSHH
T ss_pred HHHHHHHHhhcCCEEEecCcC---ChHHH----HHHHHHHhcCCeEEEEeccCchHh
Confidence 445778889999999999987 45433 233344556898998889655544
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.31 E-value=0.012 Score=54.55 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.4
Q ss_pred CeEEEEEecCCCCHHHHHHHHHc
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~G 396 (605)
|-++-|.|.+||||||+.+.|+-
T Consensus 24 g~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 24 GLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.29 E-value=0.011 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++.|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999765
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.29 E-value=0.01 Score=54.54 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
++||.|..||||||++++|.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999963
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.28 E-value=0.011 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+.|+||.||||||+.+.|+--+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998644
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.26 E-value=0.14 Score=48.92 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHc
Q 040300 375 QIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~G 396 (605)
-+++|.|.-|.|||||++.+.-
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.26 E-value=0.0077 Score=54.47 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
..-+++|-|.-||||||+++.|+..+
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999876
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.011 Score=58.24 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=22.3
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
++||.|+.|||||||.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 799999999999999999988775
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.23 E-value=0.0075 Score=56.18 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.5
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+.+|+|-|+-||||||+++.|+..+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998774
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.13 E-value=0.013 Score=54.34 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
+.|.++-|.|.+||||||+.+.|+-.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999743
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.13 E-value=0.011 Score=55.02 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+.|.||+|+||||++++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6799999999999999998765
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.11 E-value=0.012 Score=54.19 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+++|-||.||||||..+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999999765
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.11 E-value=0.0041 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++|+|..|+|||||++.|.|.-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999863
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.05 E-value=0.012 Score=54.10 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
++||.|..||||||..++|.-.
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 7899999999999999999743
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.02 E-value=0.011 Score=58.15 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=22.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
++||.|++||||||+.+.|.-++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 899999999999999999988764
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.99 E-value=0.015 Score=53.94 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+.+++++||+|+||||.+-=||-.+
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999876666544
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.98 E-value=0.015 Score=53.90 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=24.8
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
+|-+|+|-|+-||||||++++|+-.++.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4678999999999999999999977764
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.014 Score=53.90 Aligned_cols=27 Identities=37% Similarity=0.498 Sum_probs=24.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+.|-+++|-|+-||||||+++.|+-.+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987754
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.013 Score=53.87 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.0
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
++||+|..||||||+.++|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 7999999999999999999744
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.96 E-value=0.016 Score=51.23 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.8
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
+|.++.|-|+=|||||||.|.++.-+-.
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 4578999999999999999999876643
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.96 E-value=0.012 Score=58.33 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
++||.||.|+|||||+..|+..+
T Consensus 56 ~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 56 RLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.93 E-value=0.013 Score=54.55 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+.|.||+|+||||++++|+..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998764
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.016 Score=52.01 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+|+++.|.|++|+|||||+.-++..
T Consensus 21 ~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 21 ETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 48999999999999999999877654
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.90 E-value=0.014 Score=52.01 Aligned_cols=23 Identities=43% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+.|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.89 E-value=0.0078 Score=53.32 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.|+|+|+.++|||||++.|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998864
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.81 E-value=0.013 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
-|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999874
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.014 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+.|+|+.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999998543
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.78 E-value=0.015 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.4
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988763
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.74 E-value=0.015 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.+.|.||+|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999997654
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.68 E-value=0.016 Score=55.44 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=21.0
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|..|+|||||++.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999964
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.61 E-value=0.016 Score=51.92 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+||+|.-.+|||||++.|.|.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEeCCCCcHHHHHHHHHHh
Confidence 4899999999999999999975
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.017 Score=52.86 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.|.+++|-|.-||||||+++.|+-.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.56 E-value=0.016 Score=50.73 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++++|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988654
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.49 E-value=0.018 Score=52.11 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
..=.+.|+|+.||||||+.+.|+-.+
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHH
Confidence 34478899999999999999999754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.48 E-value=0.019 Score=51.39 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.42 E-value=0.016 Score=52.85 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
-++|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.41 E-value=0.016 Score=57.46 Aligned_cols=27 Identities=41% Similarity=0.461 Sum_probs=23.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
...-++||.|+.|||||||+..|...+
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999997544
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.39 E-value=0.022 Score=53.40 Aligned_cols=27 Identities=37% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
....+.|.||+|+||||++++|+..+.
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999998764
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.012 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=23.3
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCC
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+.+++|-|+-||||||+++.|+..+
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.39 E-value=0.022 Score=52.99 Aligned_cols=25 Identities=44% Similarity=0.582 Sum_probs=20.6
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G 125 (605)
++-.+++++||||+||||.+-=|+-
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999998766653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.36 E-value=0.018 Score=53.28 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+.|.||+|+||||++++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 5699999999999999999754
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.33 E-value=0.02 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+.|+|+-||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998654
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.31 E-value=0.018 Score=53.56 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=22.5
Q ss_pred EEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
+.+.||.|+||||++++|+..+....+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCcc
Confidence 579999999999999999987654433
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.29 E-value=0.02 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|+.|+|||||++.+.+-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3789999999999999998764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.24 E-value=0.01 Score=57.73 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=18.5
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
|+||.|++||||||+.+.|.-.+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999877653
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.23 E-value=0.022 Score=51.73 Aligned_cols=23 Identities=35% Similarity=0.716 Sum_probs=20.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998655
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.19 E-value=0.022 Score=50.20 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.9
Q ss_pred EEEEecCCCCHHHHHHHHHcC
Q 040300 377 IVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl 397 (605)
++++|+.|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988754
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.028 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.0
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999887643
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.17 E-value=0.0064 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|..|+|||||++.|+|.-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999853
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.16 E-value=0.017 Score=53.82 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=24.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
.+.+.||.|+||||++++|+..+..+.+.+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~~~ 66 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIHVT 66 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCcccc
Confidence 578999999999999999998876554443
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.15 E-value=0.021 Score=50.35 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++++|..|+|||||++-+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4789999999999999988653
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.11 E-value=0.023 Score=52.69 Aligned_cols=24 Identities=50% Similarity=0.660 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
-+++++||+|+||||.+-=||-.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999776666544
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.07 E-value=0.022 Score=50.27 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=19.7
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++++|+.|+|||||++.|.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.023 Score=50.35 Aligned_cols=21 Identities=24% Similarity=0.670 Sum_probs=18.9
Q ss_pred EEEEecCCCCHHHHHHHHHcC
Q 040300 377 IVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl 397 (605)
++|+|+.|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.05 E-value=0.026 Score=49.81 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=24.6
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++|.++.|-|+=||||||+.|.++--+
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 689999999999999999999887655
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.033 Score=48.85 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++|+|..|+|||||++-+.+-
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999987753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.98 E-value=0.02 Score=58.29 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++|+|..|+|||||+|.|.|.-
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999964
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.97 E-value=0.022 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEECCCCChHHHHHHHHhcCC
Q 040300 106 LGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 106 ~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+.|.||+|+||||++++|+-.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999998654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.97 E-value=0.032 Score=48.74 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=19.8
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++++|..|+|||||++.+.+-.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 37899999999999999887653
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.96 E-value=0.027 Score=52.73 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++.|.||.|+|||||++.++-..
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHC
Confidence 368899999999999999886443
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.93 E-value=0.021 Score=50.30 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.0
Q ss_pred CcEEEEECCCCChHHHHHHHHhcC
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
-=.++++|+.|+|||||++.|.+.
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.024 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++++|+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987653
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.89 E-value=0.03 Score=49.31 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++|+|+.|+|||||++-+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4789999999999999988754
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.88 E-value=0.029 Score=51.67 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=25.0
Q ss_pred eceeecCeEEEEEecCCCCHHHHHHHHHc
Q 040300 368 EGEFTDSQIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 368 ~G~~~~geii~i~G~NGsGKSTLlk~L~G 396 (605)
.|-+.+|.++-|.||.|+|||||.--++-
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 46688889999999999999999977653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.81 E-value=0.023 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.3
Q ss_pred EEEEecCCCCHHHHHHHHHcCCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+-+.||.|+||||+++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999997653
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.80 E-value=0.027 Score=52.25 Aligned_cols=24 Identities=42% Similarity=0.672 Sum_probs=19.9
Q ss_pred cEEEEECCCCChHHHHHHHHhcCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+++++||||+||||.+-=|+-.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999887666443
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.77 E-value=0.028 Score=52.00 Aligned_cols=28 Identities=36% Similarity=0.573 Sum_probs=25.3
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKP 129 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p 129 (605)
.|.+++|-|.-||||||+++.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6999999999999999999999877654
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.73 E-value=0.013 Score=56.92 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=18.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++||.|++||||||+.+.|.-.+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 89999999999999999987665
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.67 E-value=0.032 Score=48.85 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999988764
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.67 E-value=0.036 Score=50.89 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=24.4
Q ss_pred eceeecCeEEEEEecCCCCHHHHHHHHHc
Q 040300 368 EGEFTDSQIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 368 ~G~~~~geii~i~G~NGsGKSTLlk~L~G 396 (605)
.|-+.+|+++.|.|+.|+|||||+--++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 35588889999999999999999866653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.65 E-value=0.027 Score=49.24 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.++|+|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.031 Score=49.87 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37899999999999999988643
|
| >d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Tungsten containing formate dehydrogenase, small subunit species: Desulfovibrio gigas [TaxId: 879]
Probab=92.54 E-value=0.019 Score=53.47 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=36.2
Q ss_pred chhhcccCccccCceEEEEcCCCCceeecccccccc---------ccccccCCcceEEEecCCc
Q 040300 23 QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGC---------GICVKKCPFEAIQIINLPK 77 (605)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~---------g~~~~~cp~~ai~i~nl~~ 77 (605)
..|...||..- +..++.++++. .|..| ..||+.||.+||.+-+|.+
T Consensus 114 ~~C~~aCPy~~-----~~~~~~~~~~~----KCd~C~~R~~~G~~PaCV~~CP~~Al~fGd~~d 168 (214)
T d1h0hb_ 114 ESVISACPYDV-----PRKVAESNQMA----KCDMCIDRITNGLRPACVTSCPTGAMNFGDLSE 168 (214)
T ss_dssp HHHHHHCTTCC-----CEECTTSSCEE----CCCTTHHHHTTTCCCHHHHHCSSSCEEEEEHHH
T ss_pred ceecccCCCCC-----ceecccCCccE----eCcccHHHHhCCCCCCceeecccCCEEEeehhh
Confidence 67999999863 35666656553 79999 3799999999999998853
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.47 E-value=0.026 Score=52.59 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+.+.||.|+||||++++|++.+
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.46 E-value=0.04 Score=48.03 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=18.4
Q ss_pred EEEEEecCCCCHHHHHHHHHc
Q 040300 376 IIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~G 396 (605)
.++++|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.034 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++|+|..|+|||||++-+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999998764
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.41 E-value=0.031 Score=52.22 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+.++.|.|+.|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 57899999999999999999887543
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.034 Score=48.60 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.5
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|+.|+|||||++.+.+-
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999998753
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.32 E-value=0.032 Score=55.14 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
++||.||-|+|||||+..|...
T Consensus 53 ~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 53 RVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEeeeCCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.31 E-value=0.26 Score=46.93 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.5
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
..|.++-|-|++|+|||||+-.++...
T Consensus 55 p~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 55 PRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEecCCccchHHHHHHHHHHH
Confidence 479999999999999999998877643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.035 Score=48.83 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.7
Q ss_pred EEEEEecCCCCHHHHHHHHHc
Q 040300 376 IIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~G 396 (605)
.++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999987765
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.29 E-value=0.027 Score=52.64 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFI 529 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~ 529 (605)
+..++|+||.-. |.......+.+++.+.. ....+|++|++.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~--~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhccccccc--ccccceeeecccc
Confidence 456999999854 78888888877777652 2456788888764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.26 E-value=0.035 Score=48.77 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.5
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|..|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988864
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.24 E-value=0.038 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.23 E-value=0.033 Score=51.62 Aligned_cols=28 Identities=32% Similarity=0.313 Sum_probs=23.5
Q ss_pred EEEEECCCCChHHHHHHHH-hcCCCCCCc
Q 040300 105 VLGLVGTNGIGKSTALKIL-AGKLKPNLG 132 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL-~G~l~p~~G 132 (605)
.+.|+|.+|+|||||++-+ .+...|+.|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 5789999999999999976 556667777
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.22 E-value=0.043 Score=48.35 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=19.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37899999999999999877643
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.21 E-value=0.034 Score=53.89 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
++||.|+.|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 79999999999999998775443
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.21 E-value=0.034 Score=53.94 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 8999999999999999877533
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.21 E-value=0.034 Score=51.81 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.4
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
+++|+|...+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 6999999999999999999874
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.19 E-value=0.038 Score=48.51 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998753
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.039 Score=48.39 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|..|+|||||++.+.+-
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999987763
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.16 E-value=0.026 Score=50.19 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++++|+.|+|||||++.+.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.14 E-value=0.034 Score=49.54 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.++++|..|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997765
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.11 E-value=0.035 Score=56.49 Aligned_cols=22 Identities=41% Similarity=0.821 Sum_probs=20.6
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
|+|+|..|+|||||++.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999954
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.06 E-value=0.035 Score=54.32 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++.-+.++||.|+|||+|.|.|+..+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 44566799999999999999999875
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.048 Score=48.06 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+.|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 47899999999999999998764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.05 E-value=0.035 Score=51.17 Aligned_cols=55 Identities=7% Similarity=0.093 Sum_probs=32.7
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH-HhhcCEEEEEe
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA-TYLADRVIVYE 542 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~-~~~adrviv~~ 542 (605)
+..++++||-- ++....+..+...+.... ....+++++++..-+ ..+-.|..++.
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~--~~~~~i~~~~~~~~i~~~l~sr~~~i~ 156 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYS--NSTRFAFACNQSNKIIEPLQSQCAILR 156 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTT--TTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccc--cceeeeeccCchhhhhhHHHHHHHHhh
Confidence 35799999965 455556666666666542 345677778776443 22334444444
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.048 Score=47.42 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|..|+|||||++.+.+-.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 37899999999999999887643
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.041 Score=48.32 Aligned_cols=23 Identities=30% Similarity=0.729 Sum_probs=20.0
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 37899999999999999998854
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.01 E-value=0.049 Score=50.47 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.2
Q ss_pred eceeecCeEEEEEecCCCCHHHHHHHH
Q 040300 368 EGEFTDSQIIVMLGENGTGKTTFIRML 394 (605)
Q Consensus 368 ~G~~~~geii~i~G~NGsGKSTLlk~L 394 (605)
.|-+.+|.++.|.||.|+|||||.--+
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHH
T ss_pred cCCccCCEEEEEEcCCCCCHHHHHHHH
Confidence 466888899999999999999998644
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.01 E-value=0.045 Score=50.62 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=24.7
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHc
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~G 396 (605)
|-+.+|.++.|.|++|+|||||.-.++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5588899999999999999999877763
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.00 E-value=0.033 Score=48.98 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.+.|+|..|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999997664
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.99 E-value=0.038 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++++|..|+|||||++.+.+-
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999887753
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.97 E-value=0.037 Score=48.84 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.++|+.|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999987654
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.049 Score=47.58 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|..|+|||||++.+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999887764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.89 E-value=0.036 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
+++|+|...+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 6999999999999999999874
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=0.034 Score=48.59 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.++|+|..|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999999765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.82 E-value=0.039 Score=48.24 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.|+|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999887654
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.04 Score=48.13 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.|+|..|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.043 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+.|+|..|+|||||++.+.+-.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999998887643
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.75 E-value=0.036 Score=54.24 Aligned_cols=23 Identities=48% Similarity=0.731 Sum_probs=20.5
Q ss_pred EEEEecCCCCHHHHHHHHHcCCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+.++||.|+|||+|.|.||..+.
T Consensus 52 iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhhccc
Confidence 56899999999999999998653
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.72 E-value=0.039 Score=50.84 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=19.7
Q ss_pred EEEECCCCChHHHHHHHHhcCC
Q 040300 106 LGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 106 ~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+.|.||.|+||||++++|+-.+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 7799999999999999998654
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.70 E-value=0.043 Score=49.61 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+++|-|.-||||||+++.|+..+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.67 E-value=0.044 Score=50.98 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEEecCCCCHHHHHHHHHc
Q 040300 376 IIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~G 396 (605)
++||.|+-||||||+.++|+.
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999964
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.67 E-value=0.048 Score=48.04 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.+.++|..|+|||||++-+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999977654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.67 E-value=0.027 Score=50.06 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.5
Q ss_pred CcEEEEECCCCChHHHHHHHHhcC
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
-=.+.++|..|+|||||++-|.+.
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.66 E-value=0.044 Score=47.92 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|..|+|||||++.+.+-
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987753
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.65 E-value=0.042 Score=48.05 Aligned_cols=21 Identities=29% Similarity=0.503 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.65 E-value=0.045 Score=47.88 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=19.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|..|+|||||++-+..-
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999888753
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.62 E-value=0.038 Score=48.67 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=20.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
.+.++|+.|+|||||++.+.+-..+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~~ 38 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQSV 38 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999765433
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.59 E-value=0.04 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.8
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+.|.||.|+|||+|++.|+...
T Consensus 43 vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhhcc
Confidence 6799999999999999999753
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.58 E-value=0.045 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++++|..|+|||||++.+.+-.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999887643
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.58 E-value=0.046 Score=48.17 Aligned_cols=20 Identities=25% Similarity=0.737 Sum_probs=17.9
Q ss_pred EEEEecCCCCHHHHHHHHHc
Q 040300 377 IVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~G 396 (605)
++++|+.|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999977765
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.57 E-value=0.057 Score=47.11 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|..|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999888764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.52 E-value=0.05 Score=47.24 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++|+|..|+|||||++-+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.51 E-value=0.061 Score=47.38 Aligned_cols=24 Identities=38% Similarity=0.783 Sum_probs=20.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.+.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 478999999999999999987643
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.50 E-value=0.048 Score=49.12 Aligned_cols=21 Identities=19% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEecCCCCHHHHHHHHHcC
Q 040300 377 IVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl 397 (605)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987754
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.49 E-value=0.048 Score=47.40 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=18.7
Q ss_pred EEEEecCCCCHHHHHHHHHcC
Q 040300 377 IVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl 397 (605)
++++|..|+|||||++.+.+-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=0.053 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.|+|..|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.43 E-value=0.046 Score=47.49 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=18.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.+.|+|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.43 E-value=0.037 Score=51.61 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=31.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l 279 (605)
.+..++++||.-. |.......+.+.+.+... ...+|+++++.+-+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~-~~~~Il~tn~~~~i 174 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSK-NIRLIMVCDSMSPI 174 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT-TEEEEEEESCSCSS
T ss_pred CCceEEEeccccc-cccccchhhhcccccccc-cccceeeeccccch
Confidence 3567999999854 777776666666665432 45688899887643
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.41 E-value=0.046 Score=47.81 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.+.|+|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999998765
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.39 E-value=0.045 Score=50.34 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=28.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~ 528 (605)
..++++||-- .+....+..+++.|.+.. ...-+++++++.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~--~~~~~~~~~~~~ 139 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYA 139 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCG
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhcc--cceeeccccCcH
Confidence 4699999964 677788888888887752 244556666654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.37 E-value=0.046 Score=53.92 Aligned_cols=58 Identities=21% Similarity=0.149 Sum_probs=37.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEec-----CHhHHHhhcCEEEEEe
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEH-----DLSVLDYLSDFICCLY 290 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsH-----dl~~l~~~~D~i~vl~ 290 (605)
.+|.+++=.=||.+-...-...+.+.+.-+...|.-+|+||. ...++..++|..+++-
T Consensus 110 ~~~~~~ir~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~ 172 (323)
T d2qm8a1 110 IDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLM 172 (323)
T ss_dssp GCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEE
T ss_pred cccceeeccccccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcccceEEEEe
Confidence 456677777777776655555555555544445777777774 4566777888887773
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.35 E-value=0.046 Score=48.34 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.++|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.23 E-value=0.058 Score=50.21 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.6
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCCCC
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKLKP 129 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l~p 129 (605)
...+.|.||.|+||||+++.|+-.++.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 458899999999999999999987653
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.21 E-value=0.044 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.|+|..|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999888754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.057 Score=47.45 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=18.7
Q ss_pred EEEEecCCCCHHHHHHHHHcC
Q 040300 377 IVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl 397 (605)
++++|..|+|||||++.+.+-
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.07 E-value=0.054 Score=50.32 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=20.0
Q ss_pred cEEEEECCCCChHHHHHHHHhc
Q 040300 104 QVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G 125 (605)
.++||.|.-||||||+.++|+.
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.00 E-value=0.057 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|..|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999977654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.98 E-value=0.056 Score=50.33 Aligned_cols=26 Identities=42% Similarity=0.534 Sum_probs=22.5
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPD 401 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~ 401 (605)
.+.|.||.|+||||+++.|+-.++..
T Consensus 45 ~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 45 RATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHhcc
Confidence 47899999999999999999877543
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.98 E-value=0.051 Score=49.98 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l 279 (605)
..++++||. ..+.......+.+.|.+..+ ...+++++++...+
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTK-NTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGGS
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhccc-ceeeccccCcHHHh
Confidence 469999996 46777777777777776543 45677777776554
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.97 E-value=0.059 Score=47.47 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|..|+|||||++-+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999887753
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.87 E-value=0.097 Score=50.09 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+||||-.-+|||||++.|++.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999955
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=90.80 E-value=0.04 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+.|+|+.|+|||||++.+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999997644
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.73 E-value=0.058 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++|+|..|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999976654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.72 E-value=0.055 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=20.9
Q ss_pred cEEEEECCCCChHHHHHHHHhcCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.-+.|.||.|+|||++++.|+...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 347899999999999999999754
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.70 E-value=0.058 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G 125 (605)
.+|+++.|.|+.|+|||||+.-++-
T Consensus 32 ~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 32 ETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp ESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999977653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.60 E-value=0.025 Score=55.74 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=24.3
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCCCC
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKLKP 129 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l~p 129 (605)
|..+.|+|+-|+|||||+|.|+++++|
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 346899999999999999999999976
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.58 E-value=0.051 Score=48.12 Aligned_cols=29 Identities=31% Similarity=0.280 Sum_probs=24.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCce
Q 040300 105 VLGLVGTNGIGKSTALKILAGKLKPNLGR 133 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l~p~~G~ 133 (605)
.+.|||..|+|||||++-+.....|+.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 47899999999999999987666677664
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.53 E-value=0.056 Score=47.50 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++|+|..|+|||||++-+.+-
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987643
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.45 E-value=0.056 Score=48.60 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++|+|+.|+|||||++.+.+-
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhhC
Confidence 4889999999999999987653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.38 E-value=0.033 Score=54.87 Aligned_cols=25 Identities=44% Similarity=0.744 Sum_probs=22.9
Q ss_pred EEEEecCCCCHHHHHHHHHcCCCCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLKPD 401 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~p~ 401 (605)
+.|.||-|+|||||+|.|+++++|-
T Consensus 31 vLl~G~pG~GKT~lar~~~~iLp~~ 55 (333)
T d1g8pa_ 31 VLVFGDRGTGKSTAVRALAALLPEI 55 (333)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSCCE
T ss_pred EEEECCCCccHHHHHHHHHHhCCCc
Confidence 6799999999999999999999764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.33 E-value=0.077 Score=51.31 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=22.5
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+|+..+|+|+.|+|||||+..|+-..
T Consensus 42 rGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 42 RGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp TTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998643
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.33 E-value=0.046 Score=48.12 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=17.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++++|+.|+|||||++.+++-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999987653
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.33 E-value=0.068 Score=47.69 Aligned_cols=28 Identities=36% Similarity=0.383 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC--CCCCCc
Q 040300 105 VLGLVGTNGIGKSTALKILAGK--LKPNLG 132 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~--l~p~~G 132 (605)
.+.|+|..|+|||||++-+.-. ..|+.|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 5789999999999999988322 246666
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.32 E-value=0.083 Score=46.19 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++++|..|+|||||++-+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999888754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.32 E-value=0.07 Score=47.35 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|..|+|||||++.+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999887753
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.31 E-value=0.054 Score=47.93 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=23.7
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
.+.|+|..|+|||||++-+.....|+.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence 4789999999999999988766667665
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.29 E-value=0.077 Score=49.11 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=22.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.+++|=|+=||||||+++.|+-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4799999999999999999997654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=0.073 Score=46.58 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.4
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|+.|+|||||++-+.+-
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988763
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.074 Score=46.53 Aligned_cols=20 Identities=25% Similarity=0.679 Sum_probs=17.9
Q ss_pred EEEEecCCCCHHHHHHHHHc
Q 040300 377 IVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~G 396 (605)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999997654
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.12 E-value=0.07 Score=48.84 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.5
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G 125 (605)
.+|+++.|.|+.|+||||++--++-
T Consensus 32 ~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 32 ESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999887764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.08 E-value=0.079 Score=47.48 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.2
Q ss_pred CCcEEEEECCCCChHHHHHHHHhc
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G 125 (605)
.|.=+.|.|++|+||||+.-.|.-
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 688999999999999999877654
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.08 E-value=0.071 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.5
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+|+|+||-++||||||+.|.|..
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999864
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.07 Score=47.34 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.|+|..|+|||||++-+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999887653
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.02 E-value=0.046 Score=48.09 Aligned_cols=22 Identities=41% Similarity=0.428 Sum_probs=18.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++++|..|+|||||++.+.+-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987653
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.00 E-value=0.077 Score=47.31 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=21.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcC--CCCCee
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL--LKPDSV 403 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl--~~p~~G 403 (605)
.+.|+|..|+|||||++.+.-. ..|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 4789999999999999988422 346655
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.99 E-value=0.078 Score=46.47 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.0
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.+.++|..|+|||||++.+.+-
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999987763
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.97 E-value=0.082 Score=48.74 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=22.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILA 124 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~ 124 (605)
.+|.++.|.|++|+||||+.--++
T Consensus 35 p~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 35 ESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999988776
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.97 E-value=0.076 Score=48.99 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=22.5
Q ss_pred EEEEEecCCCCHHHHHHHH-HcCCCCCee
Q 040300 376 IIVMLGENGTGKTTFIRML-AGLLKPDSV 403 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L-~Gl~~p~~G 403 (605)
.+.|+|.+|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 4789999999999999876 455567665
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.93 E-value=0.059 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+-|.||.|+|||+|++.|++.+
T Consensus 44 iLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 44 VLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp EEEBCCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCcchhHHHHHHHHh
Confidence 6799999999999999999876
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.91 E-value=0.092 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.++|..|+|||||++-+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.89 E-value=0.076 Score=46.43 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.|+|..|+|||||++-+.+-
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.87 E-value=0.074 Score=47.69 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCChHHHHHHHHhc
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G 125 (605)
.|.-+.|.|++|+|||||.-.|.-
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 688899999999999999987753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.87 E-value=0.073 Score=46.80 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.|+|..|+|||||++-+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999987653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.74 E-value=0.067 Score=51.52 Aligned_cols=24 Identities=42% Similarity=0.517 Sum_probs=21.8
Q ss_pred cEEEEECCCCChHHHHHHHHhcCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
-+++|+|+-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 389999999999999999999863
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.74 E-value=0.082 Score=51.11 Aligned_cols=32 Identities=25% Similarity=0.148 Sum_probs=26.1
Q ss_pred eecCCCCCCCcEEEEECCCCChHHHHHHHHhc
Q 040300 94 LHRLPVPRPGQVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 94 l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G 125 (605)
++.+..+-.|+..+|+|+.|+|||||+..|+-
T Consensus 34 ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 34 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HHHHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred eeecccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 34443446899999999999999999988864
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.69 E-value=0.086 Score=45.93 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|..|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999987754
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.68 E-value=0.074 Score=50.43 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=20.1
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+-|.||.|+|||+|++.++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 6799999999999999999864
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.66 E-value=0.086 Score=46.12 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEEEecCCCCHHHHHHHHHc
Q 040300 376 IIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~G 396 (605)
.++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.66 E-value=0.05 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.3
Q ss_pred EEEEecCCCCHHHHHHHHHcCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+.|.||.|+||||+++.++..+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 5567999999999999998765
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.65 E-value=0.056 Score=47.56 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=9.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.|+|..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999877653
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.64 E-value=0.093 Score=46.69 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.4
Q ss_pred EEEEEecCCCCHHHHHHHHHc
Q 040300 376 IIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~G 396 (605)
.++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 378999999999999988765
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.63 E-value=0.087 Score=47.88 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.3
Q ss_pred CCCcEEEEECCCCChHHHHHHHH
Q 040300 101 RPGQVLGLVGTNGIGKSTALKIL 123 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL 123 (605)
.+|+++.|.|++|+|||||+--+
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHH
Confidence 48999999999999999997543
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.52 E-value=0.085 Score=46.23 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.+.|+|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 477999999999999998765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.52 E-value=0.084 Score=46.22 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.+.|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999998754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.52 E-value=0.089 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.3
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++++|..|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999977664
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.43 E-value=0.086 Score=46.09 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.++|+|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997644
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.42 E-value=0.058 Score=47.46 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=8.5
Q ss_pred EEEEecCCCCHHHHHHHHHcC
Q 040300 377 IVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl 397 (605)
++|+|..|+|||||++.+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877653
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.37 E-value=0.087 Score=45.88 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+.|+|..|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999987653
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.35 E-value=0.1 Score=46.25 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=17.8
Q ss_pred EEEEEecCCCCHHHHHHHHHc
Q 040300 376 IIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~G 396 (605)
.+.++|..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999976554
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.34 E-value=0.091 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++++|..|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999976654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.30 E-value=0.068 Score=55.00 Aligned_cols=23 Identities=48% Similarity=0.731 Sum_probs=21.2
Q ss_pred EEEEecCCCCHHHHHHHHHcCCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+.++||.|+|||-|+|.||+++.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999763
|
| >d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: DsrB insert domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.29 E-value=0.036 Score=41.31 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=22.0
Q ss_pred eeec-cccccccc--cccccCCcceEEEec
Q 040300 48 AFIS-EELCIGCG--ICVKKCPFEAIQIIN 74 (605)
Q Consensus 48 ~~i~-~~~c~~~g--~~~~~cp~~ai~i~n 74 (605)
|.|+ |.+|-+|+ .|++.||++||....
T Consensus 4 P~v~~~~~c~~C~~~~Cv~~CP~~Ai~~~~ 33 (65)
T d3c7bb1 4 PIPNDEAIRKTCEIPSTVAACPTGALKPDM 33 (65)
T ss_dssp CCCCHHHHHHHCCHHHHHHTCTTCCEEEET
T ss_pred CcccchhhhCCCCChHHHHhCcCCCccccc
Confidence 4555 56899999 599999999998653
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.26 E-value=0.1 Score=46.85 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+||+|.-.+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 47999999999999999999864
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.23 E-value=0.11 Score=46.75 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEecCCCCHHHHHHHHHcCCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+||+|.-.+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998653
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.09 E-value=0.12 Score=50.05 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+=.+||||-..+|||||+++|++.-
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 34579999999999999999999763
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.09 E-value=0.094 Score=46.67 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.+.|+|..|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999988654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.06 E-value=0.1 Score=46.59 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.++|+|..|+|||||++.+.+-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999776654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.06 E-value=0.085 Score=51.00 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCCC-CC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKLK-PN 130 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l~-p~ 130 (605)
.++++|.-.||||||++.|.|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 579999999999999999999753 44
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.01 E-value=0.089 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=19.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
++.|.|.=|||||||++-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999988764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.94 E-value=0.096 Score=46.42 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=17.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.+.|+|..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999975543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.81 E-value=0.089 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
-+||+|-.-+|||||++.|+|.-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999863
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.73 E-value=0.066 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++.|.||.|+||||+++.++-.+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45566999999999999998654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.71 E-value=0.1 Score=48.22 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.5
Q ss_pred CCCcEEEEECCCCChHHHHHHHH
Q 040300 101 RPGQVLGLVGTNGIGKSTALKIL 123 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL 123 (605)
.+|+++.|.|+.|+|||||.--+
T Consensus 34 p~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 34 ETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEEcCCCCCHHHHHHHH
Confidence 38999999999999999997744
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.46 E-value=0.14 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=18.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHc
Q 040300 375 QIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~G 396 (605)
.=+.|.|++|+|||||.-.|.-
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999977753
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.36 E-value=0.094 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++++|.-.||||||++.|.|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999975
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.32 E-value=0.14 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=18.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHc
Q 040300 375 QIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~G 396 (605)
.=+.|.|++|+|||||.-.|..
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHH
Confidence 3589999999999999877654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.22 E-value=0.085 Score=54.24 Aligned_cols=56 Identities=16% Similarity=0.337 Sum_probs=33.2
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
-.-+.++||+|+|||-|+|.||+.+.--.=.++.. .+.+ .-|.|.+..+.+.++++
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT-~fTe--aGYvG~DVesii~~L~~ 104 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT-KFTE--VGYVGKEVDSIIRDLTD 104 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG-GGC------CCCCTHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecc-eeee--cceeecchhHHHHHHHH
Confidence 34689999999999999999999763211111100 0111 12667776666655544
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.22 E-value=0.1 Score=46.56 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q 040300 105 VLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.++|+|..|+|||||++-+.+-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999777543
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.09 E-value=0.12 Score=45.91 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.3
Q ss_pred CCcEEEEECCCCChHHHHHHHHh
Q 040300 102 PGQVLGLVGTNGIGKSTALKILA 124 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~ 124 (605)
.|.=+.|.|++|+||||+.-.|.
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999999886654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.73 E-value=0.13 Score=49.56 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=22.2
Q ss_pred EEEEecCCCCHHHHHHHHHcCCC-CCe
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLK-PDS 402 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~-p~~ 402 (605)
++++|.-.||||||+++|+|.-- |.+
T Consensus 27 ivVvG~~ssGKSSliNaLlG~~~lP~~ 53 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGRDFLPRG 53 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTSCCCCC-
T ss_pred EEEEeCCCCCHHHHHHHHhCCCCCCCC
Confidence 68999999999999999999753 553
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.69 E-value=0.13 Score=49.94 Aligned_cols=65 Identities=6% Similarity=-0.030 Sum_probs=38.9
Q ss_pred CcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q 040300 464 EVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATY 533 (605)
Q Consensus 464 ~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~ 533 (605)
....++.-+.+++.-..-+...|-++++-. .|......+.++.+.. ...+..++.++.+.+....
T Consensus 194 ~~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk----~d~~~~e~~~~~~~~~-~~~~~~vi~~sa~~E~~L~ 258 (319)
T d1wxqa1 194 DPTKWSQDDLLAFASEIRRVNKPMVIAANK----ADAASDEQIKRLVREE-EKRGYIVIPTSAAAELTLR 258 (319)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHSCEEEEEEC----GGGSCHHHHHHHHHHH-HHTTCEEEEECHHHHHHHH
T ss_pred hhhhcCHHHHHHhHHHhhhhcCchhhhccc----ccchhhHHHHHHHHHH-hhcCCEEEEecHHHHHHHH
Confidence 345677778888777777777887777432 1111223344444443 4557788888887765543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=87.68 E-value=0.14 Score=51.69 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=31.8
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 040300 476 VALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527 (605)
Q Consensus 476 vaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD 527 (605)
-+|..+|=++||++++.|-. |.++..... +.+ ..|.-|+-+-|=
T Consensus 218 ~~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa-~tGhlV~tTlHa 261 (401)
T d1p9ra_ 218 RGLRAILRQDPDVVMVGEIR---DLETAQIAV----QAS-LTGHLVMSTLHT 261 (401)
T ss_dssp HHHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHH-HTTCEEEEEECC
T ss_pred HHHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHH-hcCCeEEEEecc
Confidence 35777888999999999987 665544433 222 358889988884
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.50 E-value=0.15 Score=49.88 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.5
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+|..++.++||+|+|||.|++.||-.+
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCcchhHHHHHHHHhhc
Confidence 455688999999999999999999765
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.37 E-value=0.14 Score=49.01 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.0
Q ss_pred EEEEecCCCCHHHHHHHHHcCCC-CC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLK-PD 401 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~-p~ 401 (605)
++++|.-.||||||+++|+|.-- |.
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~~lP~ 54 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRDFLPR 54 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSCCSCC
T ss_pred EEEEcCCCCCHHHHHHHHhCCCcCCC
Confidence 78999999999999999999752 54
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.92 E-value=0.14 Score=47.14 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.4
Q ss_pred cEEEEECCCCChHHHHHHHHhcCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++++|=|.=||||||+++.|+-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 378899999999999999999765
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.62 E-value=0.17 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.3
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.+.++||.|+|||.|.+.||-.+.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCcchhHHHHHHHHhhcc
Confidence 477999999999999999998763
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.54 E-value=0.18 Score=44.55 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=18.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl 397 (605)
.+.|+|..|+|||||++-+..-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999888543
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.31 E-value=0.23 Score=43.99 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.5
Q ss_pred eEEEEEecCCCCHHHHHHHHH
Q 040300 375 QIIVMLGENGTGKTTFIRMLA 395 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~ 395 (605)
.=+.|.|++|+|||||.-.|.
T Consensus 16 ~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHH
Confidence 358999999999999886554
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.03 E-value=0.22 Score=47.94 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+||+|..-+|||||+++|++--
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.91 E-value=0.19 Score=46.70 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=35.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH-HhhcCEEEEEe
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA-TYLADRVIVYE 542 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~-~~~adrviv~~ 542 (605)
..++|+||.=. |...++..+++.|++. .....+|++|++..-+ ..+-+|..++.
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~--~~~~~~il~tn~~~~i~~~i~SRc~~i~ 170 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILSRCLQFH 170 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcC--CCCeEEEEEcCCccccChhHhhhhcccc
Confidence 45999999854 8888887777777653 2356788898886433 33444444443
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=85.67 E-value=0.2 Score=47.79 Aligned_cols=20 Identities=35% Similarity=0.679 Sum_probs=18.2
Q ss_pred EEEEEecCCCCHHHHHHHHH
Q 040300 376 IIVMLGENGTGKTTFIRMLA 395 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~ 395 (605)
-++|+|+-|+|||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 37999999999999999884
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.67 E-value=0.19 Score=44.30 Aligned_cols=21 Identities=43% Similarity=0.392 Sum_probs=18.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
.+.|+|..|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998854
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.62 E-value=0.2 Score=45.63 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=34.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH-HHHhhcCEEEEEe
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVYE 542 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~-~~~~~adrviv~~ 542 (605)
.+++|+||.= .|-..++..++++|++. ..+.-+|++|++.. ....+-.|...+.
T Consensus 109 ~kviIide~d-~l~~~a~n~Llk~lEep--~~~~~fIl~t~~~~~ll~tI~SRc~~i~ 163 (207)
T d1a5ta2 109 AKVVWVTDAA-LLTDAAANALLKTLEEP--PAETWFFLATREPERLLATLRSRCRLHY 163 (207)
T ss_dssp CEEEEESCGG-GBCHHHHHHHHHHHTSC--CTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cceEEechhh-hhhhhhhHHHHHHHHhh--cccceeeeeecChhhhhhhhcceeEEEe
Confidence 6799999853 45566677776666653 12455678899875 3333445655544
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=85.60 E-value=0.25 Score=46.98 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=24.4
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcC
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl 397 (605)
|-+..|.++-|.||+|+|||||+-.++..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 66888899999999999999997665543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.15 E-value=0.25 Score=44.59 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=21.0
Q ss_pred EEEEecCCCCHHHHHHHHHcCCC
Q 040300 377 IVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
++|+|.=.+|||||+..|+|...
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEccCCcHHHHHHHHHhhhc
Confidence 89999999999999999998654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.11 E-value=0.28 Score=44.61 Aligned_cols=53 Identities=8% Similarity=0.048 Sum_probs=32.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH-HhhcCEEEEE
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL-DYLSDFICCL 289 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l-~~~~D~i~vl 289 (605)
.+|+|+||. -.|...+...+.+.|.+-. .+..+|++|+++.-+ ..+-.|..++
T Consensus 109 ~kviIide~-d~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~~ll~tI~SRc~~i 162 (207)
T d1a5ta2 109 AKVVWVTDA-ALLTDAAANALLKTLEEPP-AETWFFLATREPERLLATLRSRCRLH 162 (207)
T ss_dssp CEEEEESCG-GGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred cceEEechh-hhhhhhhhHHHHHHHHhhc-ccceeeeeecChhhhhhhhcceeEEE
Confidence 679999975 3455665555555554432 256678899998744 3344554444
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.03 E-value=0.21 Score=45.42 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=18.4
Q ss_pred EEEEecCCCCHHHHHHHHHc
Q 040300 377 IVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~G 396 (605)
++|+|.-++|||||+..|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999953
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=84.85 E-value=0.21 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.0
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+||+|-.-+|||||++.|++.-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999763
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=84.58 E-value=0.24 Score=49.37 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
..+.+.||.|+|||||.+.|++.+.
T Consensus 155 ~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 155 RYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999875
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.46 E-value=0.37 Score=43.44 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=24.7
Q ss_pred CCCCCcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 99 VPRPGQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 99 ~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
..+|-=.+||+|.=.+|||||++.|.|...
T Consensus 4 ~~~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCCCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 345555799999999999999999998653
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.37 E-value=0.23 Score=45.97 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=30.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH
Q 040300 235 AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279 (605)
Q Consensus 235 p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l 279 (605)
..|+|+||.= .|+..+...+.+.|.+.. .+..+|++|++..-+
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCC-TTEEEEEEESCGGGS
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCC-CCeEEEEEcCCcccc
Confidence 4599999985 478777766666665432 256788899887665
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.26 E-value=0.25 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.6
Q ss_pred EEEEecCCCCHHHHHHHH---HcCCC
Q 040300 377 IVMLGENGTGKTTFIRML---AGLLK 399 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L---~Gl~~ 399 (605)
++|+|..|+|||||+..| +|...
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 899999999999999888 45543
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.84 E-value=0.34 Score=46.24 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=20.6
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHc
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~G 396 (605)
+|+.++|+|+.|+|||||+..++-
T Consensus 67 kGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 67 KGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEeeCCCCCCHHHHHHHHHH
Confidence 447999999999999999877754
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.56 E-value=0.25 Score=44.91 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
-+|++|.-++|||||+..|.+
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 489999999999999999954
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=82.75 E-value=0.36 Score=45.78 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.4
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+|.++-|.|++|+|||||+-.++-.
T Consensus 52 ~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 52 PMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHH
Confidence 47999999999999999998766544
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.58 E-value=0.34 Score=46.26 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=24.1
Q ss_pred ecCCCCCCCcEEEEECCCCChHHHHHHHHh
Q 040300 95 HRLPVPRPGQVLGLVGTNGIGKSTALKILA 124 (605)
Q Consensus 95 ~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~ 124 (605)
+.+..+-.|+..+|.|+.|+|||||+.-++
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence 333334689999999999999999977665
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.39 E-value=0.38 Score=45.74 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=23.5
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHc
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~G 396 (605)
|-+..|.++-|.||+|+|||||+-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHH
Confidence 5577889999999999999999755553
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=82.08 E-value=0.34 Score=44.29 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=30.5
Q ss_pred ccCCCEEEEecCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 040300 483 GKPADIYLIDEPSAYL-DSEQRIVAAKVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 483 ~~~p~lllLDEPt~~L-D~~~~~~l~~~l~~l~~~~g~tiivvsH 526 (605)
....++|++|+==.-. +...+..+..++.++.. .|+.+|++|.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~ 138 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASD 138 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEES
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhh-ccceEEEecC
Confidence 4478899999764332 46667778888888754 4777777776
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=81.79 E-value=0.33 Score=47.26 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+|.-++.++||+|+|||.+.+.|+-.+
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCcchHHHHHHHHHHHh
Confidence 455578899999999999999998765
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=81.78 E-value=0.44 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=20.0
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
++.+.||.|+|||.|.+.|++.+
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHHh
Confidence 45668999999999999999864
|