Citrus Sinensis ID: 040664

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MTLEKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQISTEDMSKLLMSRKKRGLYEAMKKGQERKKAHVDLLKQRKKKIEAAEKFKKN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHcccccccccccHHHccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccEEcccccccccccccccHcccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MTLEKQYHDELKMEldgfkysssvsdatkqksgedmetgeeplpdvqqiSTEDMSKLLMSRKKRGLYEAMKKGQERKKAHVDLLKQRKKKIEAAEKFKKN
Flexible Loop (DISEMBL)
MTLEKQYHDELKmeldgfkysssvsDATKqksgedmetgeeplpdvqqisTEDMSKLLMSRKKRGLYeamkkgqerkkaHVDLLKQRKKKIEAAEKFKKN
Low Complexity Region (SEG)
MTLEKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQISTEDMSKLLMSRKKRGLYEAMKKGQERKKAHVDLLKQRkkkieaaekfkkN
Disordered region (IsUnstruct)
****************************************************************************************************
Disordered Region (DISOPRED)
******YHDELKMELD************************************************************************************
Disordered Region (DISEMBL)
MTLEKQYHDELKMELDGFKYS********************PLPDVQQISTEDMSKLLMSRKKRGLYEAM********AHVDLLKQRKKKIEAAEKFKKN
Disordered Region (DISPRO)
MTLEKQYHDELKMELDGFKY*******************************EDMSKLLMSRKKRGLYEAMKKGQERKKAHVDLLKQRKKKIEA*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTLEKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQISTEDMSKLLMSRKKRGLYEAMKKGQERKKAHVDLLKQRKKKIEAAEKFKKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
225452352	607	PREDICTED: pescadillo homolog [Vitis vin	0.95	0.156	0.639	2e-26
147852204	621	hypothetical protein VITISV_035385 [Viti	0.95	0.152	0.628	3e-26
449443367	608	PREDICTED: pescadillo homolog [Cucumis s	0.87	0.143	0.533	4e-16
297811579	587	hypothetical protein ARALYDRAFT_325922 [	0.82	0.139	0.531	2e-13
356572972	603	PREDICTED: pescadillo homolog [Glycine m	0.89	0.147	0.478	9e-13
15241421	590	pescadillo-related protein [Arabidopsis	0.8	0.135	0.522	2e-12
356504026	568	PREDICTED: pescadillo homolog [Glycine m	0.92	0.161	0.479	1e-11
326494820	595	predicted protein [Hordeum vulgare subsp	0.94	0.157	0.448	4e-10
118482778	171	unknown [Populus trichocarpa]	0.75	0.438	0.512	1e-09
224077682	604	predicted protein [Populus trichocarpa]	0.75	0.124	0.512	1e-09

>gi|225452352|ref|XP_002274778.1| PREDICTED: pescadillo homolog [Vitis vinifera] gi|296087615|emb|CBI34871.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 79/97 (81%), Gaps = 2/97 (2%)

Query: 1   MTLEKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQIS--TEDMSKLL 58
           + LE QYH+EL++EL G +YSSSVS+  KQ S ED E  EE LPD+QQI+  T  MSK++
Sbjct: 506 LALENQYHNELQLELQGVQYSSSVSNMNKQSSVEDTEAWEESLPDMQQIAEDTTTMSKVV 565

Query: 59  MSRKKRGLYEAMKKGQERKKAHVDLLKQRKKKIEAAE 95
           MSRKKR LYEAM+ G+ERK+AHV+LLK+RK+KIEAA+
Sbjct: 566 MSRKKRRLYEAMQIGKERKRAHVNLLKERKQKIEAAQ 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852204|emb|CAN80148.1| hypothetical protein VITISV_035385 [Vitis vinifera]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 79/97 (81%), Gaps = 2/97 (2%)

Query: 1   MTLEKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQIS--TEDMSKLL 58
           + LE QYH+EL++EL G +YSSSVS+  KQ S ED E  EE LPB+QQI+  T  MSK++
Sbjct: 520 LALENQYHNELQLELQGVQYSSSVSNMNKQSSVEDXEAWEESLPBMQQIAEDTTTMSKVV 579

Query: 59  MSRKKRGLYEAMKKGQERKKAHVDLLKQRKKKIEAAE 95
           MSRKKR LYEAM+ G+ERK+AHV+LLK+RK+KIEAA+
Sbjct: 580 MSRKKRRLYEAMQIGKERKRAHVNLLKERKQKIEAAQ 616

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443367|ref|XP_004139449.1| PREDICTED: pescadillo homolog [Cucumis sativus]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 67/90 (74%), Gaps = 3/90 (3%)

Query: 1   MTLEKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEP-LPDVQQIS--TEDMSKL 57
           M LEK+YHDELK+EL G KYSS++S+  KQ   ++ E GE+  LPD QQ++  T+ +SK+
Sbjct: 508 MALEKEYHDELKLELQGGKYSSAISNVDKQLPDQEKEGGEDTNLPDYQQMAEDTDKLSKV 567

Query: 58  LMSRKKRGLYEAMKKGQERKKAHVDLLKQR 87
           +MSRKK+ LYEAM+ G+  KK  +DLL +R
Sbjct: 568 MMSRKKKSLYEAMQIGKRTKKGKIDLLHER 597

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811579|ref|XP_002873673.1| hypothetical protein ARALYDRAFT_325922 [Arabidopsis lyrata subsp. lyrata] gi|297319510|gb|EFH49932.1| hypothetical protein ARALYDRAFT_325922 [Arabidopsis lyrata subsp. lyrata]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 62/94 (65%), Gaps = 12/94 (12%)

Query: 4   EKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQISTE--DMSKLLMSR 61
           EKQYH+ELKME+   K      D       ED    EE +PD  QI+ E  DMS +LMSR
Sbjct: 503 EKQYHEELKMEITASK------DVVAPVVTED----EESVPDAMQIAQENADMSTVLMSR 552

Query: 62  KKRGLYEAMKKGQERKKAHVDLLKQRKKKIEAAE 95
           KKR LYEAMK GQ++KKA V+L++QRKKK+  A+
Sbjct: 553 KKRKLYEAMKIGQKKKKASVELIEQRKKKLNDAQ 586

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572972|ref|XP_003554639.1| PREDICTED: pescadillo homolog [Glycine max]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 62/92 (67%), Gaps = 3/92 (3%)

Query: 1   MTLEKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQISTEDMSKLLMS 60
           M LE+QY D+LK EL G   +S+ S  T   S E ++TGE      + +  +DM KL++S
Sbjct: 508 MILEQQYRDDLKKELQGITCTSAGSIET---STEVVQTGESTTSVHENVDHDDMGKLMLS 564

Query: 61  RKKRGLYEAMKKGQERKKAHVDLLKQRKKKIE 92
           RK+RGL +A++K +ER KA  DL+KQRKKKI+
Sbjct: 565 RKRRGLVKAIEKSRERNKAQTDLIKQRKKKID 596

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241421|ref|NP_196956.1| pescadillo-related protein [Arabidopsis thaliana] gi|7573301|emb|CAB87619.1| pescadillo-like protein [Arabidopsis thaliana] gi|332004660|gb|AED92043.1| pescadillo-related protein [Arabidopsis thaliana]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 62/90 (68%), Gaps = 10/90 (11%)

Query: 4   EKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQISTED--MSKLLMSR 61
           EKQYH+ELKME++G   S  V  A     GE    GEE +PD  QI+ ED  M K+LMSR
Sbjct: 502 EKQYHEELKMEING---SKDVV-APVLAEGE----GEESVPDAMQIAQEDADMPKVLMSR 553

Query: 62  KKRGLYEAMKKGQERKKAHVDLLKQRKKKI 91
           KKR LY+AMK  Q RK++ V++++QRKK++
Sbjct: 554 KKRKLYDAMKISQSRKRSGVEIIEQRKKRL 583

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504026|ref|XP_003520800.1| PREDICTED: pescadillo homolog [Glycine max]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 65/96 (67%), Gaps = 4/96 (4%)

Query: 1   MTLEKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQISTEDMSKLLMS 60
           M LE+QY D+LK EL G  Y+S+    +K+ S   ++TGE     VQ+   +DMSK++MS
Sbjct: 474 MILEQQYRDDLKKELQGVTYTSA---GSKETSTGVVQTGES-TASVQENVDDDMSKVMMS 529

Query: 61  RKKRGLYEAMKKGQERKKAHVDLLKQRKKKIEAAEK 96
           RKKR L EAMK  ++ K+A  D +KQRKKKI+ A++
Sbjct: 530 RKKRKLAEAMKISKKLKEAQTDRIKQRKKKIDEAQR 565

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326494820|dbj|BAJ94529.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 64/98 (65%), Gaps = 4/98 (4%)

Query: 4   EKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQI--STEDMSKLLMSR 61
           EK+YHDELKME++G  +S+  +   K  S  D+   +E    V+Q     +D++K ++SR
Sbjct: 499 EKKYHDELKMEIEGTTFSNLSN--KKADSAPDVADEDETQAAVEQAEKDADDIAKSVVSR 556

Query: 62  KKRGLYEAMKKGQERKKAHVDLLKQRKKKIEAAEKFKK 99
           KKRGL EAMK   +RKK+ V+LLKQRKK  E++   K+
Sbjct: 557 KKRGLMEAMKISNDRKKSKVELLKQRKKAAESSASAKR 594

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482778|gb|ABK93307.1| unknown [Populus trichocarpa]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 7/82 (8%)

Query: 2   TLEKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQIS--TEDMSKLLM 59
           TLEKQYH+EL+ EL G     +V   +KQ S ED +  EE +PD +QI+   + MSKL M
Sbjct: 80  TLEKQYHEELQRELQG-----AVMKKSKQGSEEDAKASEESVPDPKQIAEDIDTMSKLGM 134

Query: 60  SRKKRGLYEAMKKGQERKKAHV 81
           SRKKRGL EA++K +ER  A +
Sbjct: 135 SRKKRGLLEAIEKRKERDTARI 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077682|ref|XP_002305360.1| predicted protein [Populus trichocarpa] gi|222848324|gb|EEE85871.1| predicted protein [Populus trichocarpa]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 7/82 (8%)

Query: 2   TLEKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQIS--TEDMSKLLM 59
           TLEKQYH+EL+ EL G     +V   +KQ S ED +  EE +PD +QI+   + MSKL M
Sbjct: 513 TLEKQYHEELQRELQG-----AVMKKSKQGSEEDAKASEESVPDPKQIAEDIDTMSKLGM 567

Query: 60  SRKKRGLYEAMKKGQERKKAHV 81
           SRKKRGL EA++K +ER  A +
Sbjct: 568 SRKKRGLLEAIEKRKERDTARI 589

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2222607	590	AT5G14520 "AT5G14520" [Arabido	0.76	0.128	0.511	2.4e-13

TAIR|locus:2222607 AT5G14520 "AT5G14520" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 44/86 (51%), Positives = 59/86 (68%)

Query:     4 EKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQISTED--MSKLLMSR 61
             EKQYH+ELKME++G K    V+    +  GE    GEE +PD  QI+ ED  M K+LMSR
Sbjct:   502 EKQYHEELKMEINGSK--DVVAPVLAE--GE----GEESVPDAMQIAQEDADMPKVLMSR 553

Query:    62 KKRGLYEAMKKGQERKKAHVDLLKQR 87
             KKR LY+AMK  Q RK++ V++++QR
Sbjct:   554 KKRKLYDAMKISQSRKRSGVEIIEQR 579


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.306   0.124   0.325    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      100        88   0.00091  102 3  10 23  0.41    30
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  520 (55 KB)
  Total size of DFA:  119 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.01u 0.16s 18.17t   Elapsed:  00:00:01
  Total cpu time:  18.01u 0.16s 18.17t   Elapsed:  00:00:01
  Start:  Sat May 11 06:37:15 2013   End:  Sat May 11 06:37:16 2013

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
COG5163	591	COG5163, NOP7, Protein required for biogenesis of	6e-05

>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]

 Score = 40.1 bits (93), Expect = 6e-05
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 11/98 (11%)

Query: 4   EKQYHDELKMELDGFKYSSSVS---DATKQKSGEDMETGEEPLPDVQQISTEDMSKLLMS 60
           E Q   EL++E  G KYS +     D  K K+ +     EE          + +  ++MS
Sbjct: 499 ELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEE--------EEKKLKMIMMS 550

Query: 61  RKKRGLYEAMKKGQERKKAHVDLLKQRKKKIEAAEKFK 98
            K++ LY+ MK    +K+   + LK++KK+I   +K  
Sbjct: 551 NKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQKKLD 588

Length = 591

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
COG5163	591	NOP7 Protein required for biogenesis of the 60S ri	99.76
KOG2481	570	consensus Protein required for normal rRNA process	98.98

>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=8.4e-19  Score=145.14  Aligned_cols=88  Identities=27%  Similarity=0.416  Sum_probs=69.9

Q ss_pred             hhhhhHHHHhhhcCCCccccchhhhhhccccccccCCCCCCchhhhchHHHHHHHHhHhHHHHHHHHHhhHHhHHHHHHH
Q 040664            4 EKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQISTEDMSKLLMSRKKRGLYEAMKKGQERKKAHVDL   83 (100)
Q Consensus         4 ~~q~q~ELeaE~~G~~~s~~~~~~~k~~~k~~~~~~~~~k~~~ee~ee~em~K~MMS~KkRKLYekMqys~~KK~~e~~~   83 (100)
                      ++|||.|||+|++||.||+..... +..++.+.+    .....+++|++++.+||||||||+||.+|+|+|.+++...+.
T Consensus       499 elq~qkele~ea~gi~yse~~e~~-k~~~ksk~k----kr~~~ee~e~k~l~~immsnkqkkly~kmk~~nak~e~~~~~  573 (591)
T COG5163         499 ELQAQKELELEAQGIKYSETSEAD-KDVNKSKNK----KRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAEN  573 (591)
T ss_pred             HHHHHHHHHhhhcCccchhhcccc-hhhhhhhhh----hhchhhHHHHHHHHHHHhhhhHHHHHHHhhccccccHHHHHH
Confidence            689999999999999999755432 212122221    112224457889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 040664           84 LKQRKKKIEAAEK   96 (100)
Q Consensus        84 L~~Kkkklek~k~   96 (100)
                      |+.++++|.++++
T Consensus       574 lk~kkk~i~k~kk  586 (591)
T COG5163         574 LKKKKKQIAKQKK  586 (591)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999874

>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]

Probab=98.98  E-value=4.9e-10  Score=94.77  Aligned_cols=90  Identities=28%  Similarity=0.379  Sum_probs=64.1

Q ss_pred             hhhhHHHHhhhcCCCccccchhhh-hhccccccccCCCCC-CchhhhchHHHHHHHHhHhHHHHHHHHHhhHHhHHHHHH
Q 040664            5 KQYHDELKMELDGFKYSSSVSDAT-KQKSGEDMETGEEPL-PDVQQISTEDMSKLLMSRKKRGLYEAMKKGQERKKAHVD   82 (100)
Q Consensus         5 ~q~q~ELeaE~~G~~~s~~~~~~~-k~~~k~~~~~~~~~k-~~~ee~ee~em~K~MMS~KkRKLYekMqys~~KK~~e~~   82 (100)
                      +.+|.||+.|+.|+.|+.-..... +..++...+-..... ...++.++.+|++||||+++|+||.+|.+++.++..++.
T Consensus       478 ~e~~~e~e~e~~~~~~~~~~~e~~~~~~~~sk~k~~~~~~~~~~ee~e~~~l~~~mms~k~~~ly~k~~~~~~rk~~e~~  557 (570)
T KOG2481|consen  478 LESQKELEEEARLAAYEEQVTEGKKKRVNKSKEKLRPLLRLKEVEEQEEKRLAKMMMSKKERKLYQKMKFSKSRKEQEAL  557 (570)
T ss_pred             chhhhhhhhhccccccchhhhhhhcccccccccccchhhhhHHHHHHHHhhhHHHhcchHHHHHHHHHhhhhhhhhhHHH
Confidence            567899999999999986443321 111011110000000 111344788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 040664           83 LLKQRKKKIEAA   94 (100)
Q Consensus        83 ~L~~Kkkklek~   94 (100)
                      .|++||+.|+..
T Consensus       558 ~l~~kkk~~~~~  569 (570)
T KOG2481|consen  558 KLKKKKKRIEAT  569 (570)
T ss_pred             HHHHHHHhhhcc
Confidence            999999999864

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00