Citrus Sinensis ID: 040718

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
MEKGLISVDRWTEGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQIWVWPERLQTMHLLGFHDIFTTKTSLTRVRAVPRYSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCYVDPLYYFGRLCRANQPPLRYKQEKRVQHKTVVAAQIKFNVESGRSAKVDRKRRRTAEVGVLGVHMSKVDALRRARRGAKLARSESSD
cccccEEEEcccccccEEEEccccHHHHccccccccccEEEccHHHHHHccccccccccccEEEEccccEEEEEEEcccccccccEEEEEEEccccccccccEEEEEEEcccEEEEEEcccccccccHHHcccHHHHHHHcccccccEEEEEccccccccccccHHHHHHHcccccccccEEEEEEEEEEEEEEEccccEEEcccccccHHHHccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEcccEEEEEEEEcccccHHHHHHHHHHccccEEEEcccccccccccHHHHcccccccccccccHHHHHHccccHHHHHHccccccccccHHHHHHccccccccccEEcccHHHHHHHHHccccccccccc
ccccEEEEEccccccEEEEEEccccccccccccccccccEEccHHHHHHHHHHcccccHHHEEEccccccEEEEccccccccccEEEEEEEEccccHHHHHHHHHHHHcccccEEEEcccccccHHHHccHHHHHHHHHHcccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHcEEEEEEEcHccHHHHHHHHHHHccccEccHHHHHHHccccccccEcccccHHHHHHHHHHHHHHccccccccEcEccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHcccccEEEEEccccccccHHHHHcHHcccccccccccccccccccEEEccccccccccccccccHcccEEcccccEEEEEHcHHEHHHHHHcccEEccccccc
mekglisvdrwtegsQVYFLTHLHsdhtqglssawargplfcsrltaklfplkfpgldlslirvldigswhsisvvspssgekTFVEVIAIdanhcpgilgCSVMLLFRGdfgcllytgdfrweasnERAEIGRNTLVKALKDDVVDILYldntycnssyafpsrevAAQQIWVWPERLQTMHLLgfhdifttktsltrvravprysfsidtleslntmhptigimpsglpwvvkplkgggslpgslfssyqskwratggtqTEKLKEALGsvdrfhkyiysvpysdhscFTEIEEFLNlvqpsnirgivsssscyvdplyyfgrlcranqpplrykqekrvQHKTVVAAQIKFNVesgrsakvdrkrrrTAEVGVLGVHMSKVDALRRARRGAKLARSESSD
MEKGLISVDRWTEGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQIWVWPERLQTMHLLGFHDIFttktsltrvravPRYSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCYVDPLYYFGRLCRANQPPLrykqekrvqhktvvaaqikfnvesgrsakvdrkrrrtaevgvlgvhmskvdalrrarrgaklarsessd
MEKGLISVDRWTEGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGswhsisvvspssGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQIWVWPERLQTMHLLGFHDIFTTKTSLTRVRAVPRYSFSIDTLESLNTMHPTIGIMPSGLPWVVkplkgggslpgslfssYQSKWRATGGTQTEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCYVDPLYYFGRLCRANQPPLRYKQEKRVQHKTVVAAQIKFNVESGRSAKVDRKRRRTAEVGVLGVHMSKVDalrrarrgaklarSESSD
****LISVDRWTEGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQIWVWPERLQTMHLLGFHDIFTTKTSLTRVRAVPRYSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCYVDPLYYFGRLCRANQPPLRYKQEKRVQHKTVVAAQIKFNV*****************VGVLGVH***********************
*EKGLISVDRWTEGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQIWVWPERLQTMHLLGFHDIFTTKTSLTRVRAVPRYSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCYVDPLYYFGRLCR***************************************************************************
MEKGLISVDRWTEGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQIWVWPERLQTMHLLGFHDIFTTKTSLTRVRAVPRYSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCYVDPLYYFGRLCRANQPPLRYKQEKRVQHKTVVAAQIKFNVESG**********RTAEVGVLGVHMSKVDALR***************
*EKGLISVDRWTEGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQIWVWPERLQTMHLLGFHDIFTTKTSLTRVRAVPRYSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCYVDPLYYFGRLCRANQPPLRYKQEKRVQHKTVVAAQ****************RRRTAEVGVLGVHMSKVDALRRARRGAKL*******
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MEKGLISVDRWTEGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQIWVWPERLQTMHLLGFHDIFTTKTSLTRVRAVPRYSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCYVDPLYYFGRLCRANQPPLRYKQEKRVQHKTVVAAQIKFNVESGRSAKVDRKRRRTAEVGVLGVHMSKVDALRRARRGAKLARSESSD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query403 2.2.26 [Sep-21-2011]
Q5QJC3457 5' exonuclease Apollo OS= yes no 0.607 0.536 0.348 4e-42
B0V2S2 571 5' exonuclease Apollo OS= yes no 0.739 0.521 0.306 2e-39
Q8C7W7 541 5' exonuclease Apollo OS= yes no 0.627 0.467 0.32 6e-37
Q4KLY6 541 5' exonuclease Apollo OS= yes no 0.627 0.467 0.325 6e-37
D2H8V8 529 5' exonuclease Apollo OS= yes no 0.622 0.474 0.321 1e-36
Q9H816 532 5' exonuclease Apollo OS= yes no 0.627 0.475 0.314 4e-35
Q9JIC31026 DNA cross-link repair 1A no no 0.645 0.253 0.293 1e-23
Q6PJP81040 DNA cross-link repair 1A no no 0.647 0.250 0.291 1e-22
Q38961484 DNA cross-link repair pro no no 0.682 0.568 0.295 3e-21
Q5QJC4972 DNA cross-link repair 1A no no 0.667 0.276 0.275 6e-20
>sp|Q5QJC3|DCR1B_CHICK 5' exonuclease Apollo OS=Gallus gallus GN=DCLRE1B PE=2 SV=1 Back     alignment and function desciption
 Score =  172 bits (436), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 163/353 (46%), Gaps = 108/353 (30%)

Query: 6   ISVDRWT----EGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFP--LKFPGLDL 59
           I+VD W+     G++++FL+H+HSDHT GLSS W+R PL+CS LTA+L    LK P    
Sbjct: 11  IAVDFWSVRRAGGARLFFLSHMHSDHTVGLSSTWSR-PLYCSPLTARLLHHRLKVP---T 66

Query: 60  SLIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTG 119
             IR L++G  H++       GE+  V V  +DANHCPG    SVM LF G FG +LYTG
Sbjct: 67  RWIRPLEVGQSHAV-------GEE--VTVTLLDANHCPG----SVMFLFEGAFGTILYTG 113

Query: 120 DFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQ-------- 171
           DFR+  + +R          AL    +D LYLDNT C    A PSR  AA Q        
Sbjct: 114 DFRYSPAMQRE--------PALSGRRIDRLYLDNTNCRPHGALPSRSRAALQAAQLIRRH 165

Query: 172 ----------------------------IWVWPERLQTMHLLGFHDIFTTKTSLTRVRAV 203
                                       + V P RL+ M LL   ++FTT+    R+ AV
Sbjct: 166 PQHRVVIGVYSLGKEELLVDLALEFGTWVVVSPSRLEQMRLLELPEVFTTEEGAGRIHAV 225

Query: 204 PRYSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQT 263
                  DTL S N +HPTI I+P+G P                                
Sbjct: 226 DVAEIRWDTLVSWNVLHPTIAILPTGRP-------------------------------- 253

Query: 264 EKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCY 316
                    V   H  I+ +PYSDHS F+E+ EF+  ++P ++  IV    CY
Sbjct: 254 ---------VKVTHPQIHLIPYSDHSSFSELCEFVKWLKPCSVIPIVKGDMCY 297
5'-3' exonuclease that plays a central role in telomere maintenance and protection during S-phase. Participates in the protection of telomeres against non-homologous end-joining (NHEJ)-mediated repair, thereby ensuring that telomeres do not fuse. Plays a key role in telomeric loop (T loop) formation by being recruited by TERF2 at the leading end telomeres and by processing leading-end telomeres immediately after their replication via its exonuclease activity: generates 3' single-stranded overhang at the leading end telomeres avoiding blunt leading-end telomeres that are vulnerable to end-joining reactions and expose the telomere end in a manner that activates the DNA repair pathways (By similarity). May be required for DNA interstrand cross-link repair.
Gallus gallus (taxid: 9031)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|B0V2S2|DCR1B_DANRE 5' exonuclease Apollo OS=Danio rerio GN=dclre1b PE=2 SV=1 Back     alignment and function description
>sp|Q8C7W7|DCR1B_MOUSE 5' exonuclease Apollo OS=Mus musculus GN=Dclre1b PE=1 SV=2 Back     alignment and function description
>sp|Q4KLY6|DCR1B_RAT 5' exonuclease Apollo OS=Rattus norvegicus GN=Dclre1b PE=2 SV=2 Back     alignment and function description
>sp|D2H8V8|DCR1B_AILME 5' exonuclease Apollo OS=Ailuropoda melanoleuca GN=DCLRE1B PE=3 SV=1 Back     alignment and function description
>sp|Q9H816|DCR1B_HUMAN 5' exonuclease Apollo OS=Homo sapiens GN=DCLRE1B PE=1 SV=1 Back     alignment and function description
>sp|Q9JIC3|DCR1A_MOUSE DNA cross-link repair 1A protein OS=Mus musculus GN=Dclre1a PE=1 SV=2 Back     alignment and function description
>sp|Q6PJP8|DCR1A_HUMAN DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=3 Back     alignment and function description
>sp|Q38961|SNM1_ARATH DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1 PE=2 SV=1 Back     alignment and function description
>sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein OS=Gallus gallus GN=DCLRE1A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
255563435427 DNA cross-link repair protein pso2/snm1, 0.945 0.892 0.618 1e-146
449453656428 PREDICTED: 5' exonuclease Apollo-like [C 0.960 0.904 0.589 1e-143
225447705435 PREDICTED: 5' exonuclease Apollo [Vitis 0.975 0.903 0.595 1e-142
224113605360 predicted protein [Populus trichocarpa] 0.794 0.888 0.572 1e-120
15223519422 DNA repair metallo-beta-lactamase family 0.890 0.850 0.524 1e-117
297845690422 hypothetical protein ARALYDRAFT_472944 [ 0.890 0.850 0.522 1e-117
356544862437 PREDICTED: 5' exonuclease Apollo-like [G 0.965 0.890 0.483 1e-112
357125358436 PREDICTED: 5' exonuclease Apollo-like [B 0.962 0.889 0.427 5e-90
224029987438 unknown [Zea mays] gi|413952236|gb|AFW84 0.967 0.890 0.432 1e-89
20804871416 DNA cross-link repair 1B-like protein [O 0.893 0.865 0.453 4e-88
>gi|255563435|ref|XP_002522720.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus communis] gi|223538070|gb|EEF39682.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/435 (61%), Positives = 315/435 (72%), Gaps = 54/435 (12%)

Query: 1   MEKGLISVDRWTEGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLS 60
           MEKGL+SVD+W EGSQVYFLTHLHSDHT+GL+SAWARGPLFCSRLTA LFP +FP  +LS
Sbjct: 1   MEKGLVSVDQWKEGSQVYFLTHLHSDHTKGLTSAWARGPLFCSRLTANLFPARFPEFNLS 60

Query: 61  LIRVLDIGSWHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGD 120
           L+ VLDIG WHS+SVVSPSSG +T ++V+ IDA+HCPG    +VMLLFRGDFGCLLYTGD
Sbjct: 61  LLCVLDIGVWHSLSVVSPSSGSQTVLQVMPIDAHHCPG----AVMLLFRGDFGCLLYTGD 116

Query: 121 FRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQ--------- 171
           FRWEA++ER +IG N L+ ALKDD VDILYLDNTYCN S+ FP R VAA+Q         
Sbjct: 117 FRWEATSERGKIGSNMLLNALKDDSVDILYLDNTYCNPSFDFPPRHVAARQVVDIIASHP 176

Query: 172 ---------------------------IWVWPERLQTMHLLGFHDIFTTKTSLTRVRAVP 204
                                      IWVWPERLQTMHLLGFHDIFTTKTS TRVRAVP
Sbjct: 177 GHDIIIGIDSLGKEDLLLHISRMLNIKIWVWPERLQTMHLLGFHDIFTTKTSQTRVRAVP 236

Query: 205 RYSFSIDTLESLNTMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSS--YQSKWRATGGTQ 262
           RYSFSI+TLE LN MHPTIGIMPSGLPWVVKP KG  +L GS  +S     K  A GGT 
Sbjct: 237 RYSFSINTLEELNKMHPTIGIMPSGLPWVVKPTKGDDNLFGSFLTSRYKNGKLSANGGTG 296

Query: 263 TEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCYVDPLYY 322
           T+KL  ++ SV+R H+YIYSVPYSDHSCF+EI+EF+ LVQP++++GIVSSSSCY++P+YY
Sbjct: 297 TDKLNGSVQSVERLHQYIYSVPYSDHSCFSEIQEFIELVQPTSMKGIVSSSSCYINPVYY 356

Query: 323 FGRLCRANQPPLRYKQEKRVQHKTVVAAQIKFNVESGRSAKVD-RKRRRTAEVGVLGVHM 381
           FGRLCR N    R +   + + K VV  Q K     G+   +   K+RRT  V       
Sbjct: 357 FGRLCRENWSAQRMRD--KYEKKEVVDVQTK--SYCGKYIPMGAAKKRRTGRV------- 405

Query: 382 SKVDALRRARRGAKL 396
           S+V ALRR R GAK+
Sbjct: 406 SRVRALRRIRHGAKI 420

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449453656|ref|XP_004144572.1| PREDICTED: 5' exonuclease Apollo-like [Cucumis sativus] gi|449493187|ref|XP_004159216.1| PREDICTED: 5' exonuclease Apollo-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225447705|ref|XP_002272846.1| PREDICTED: 5' exonuclease Apollo [Vitis vinifera] gi|296081253|emb|CBI17997.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224113605|ref|XP_002332533.1| predicted protein [Populus trichocarpa] gi|222832669|gb|EEE71146.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15223519|ref|NP_174061.1| DNA repair metallo-beta-lactamase family protein [Arabidopsis thaliana] gi|9802533|gb|AAF99735.1|AC004557_14 F17L21.20 [Arabidopsis thaliana] gi|17473671|gb|AAL38292.1| unknown protein [Arabidopsis thaliana] gi|20148601|gb|AAM10191.1| unknown protein [Arabidopsis thaliana] gi|332192705|gb|AEE30826.1| DNA repair metallo-beta-lactamase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297845690|ref|XP_002890726.1| hypothetical protein ARALYDRAFT_472944 [Arabidopsis lyrata subsp. lyrata] gi|297336568|gb|EFH66985.1| hypothetical protein ARALYDRAFT_472944 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356544862|ref|XP_003540866.1| PREDICTED: 5' exonuclease Apollo-like [Glycine max] Back     alignment and taxonomy information
>gi|357125358|ref|XP_003564361.1| PREDICTED: 5' exonuclease Apollo-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|224029987|gb|ACN34069.1| unknown [Zea mays] gi|413952236|gb|AFW84885.1| hypothetical protein ZEAMMB73_126664 [Zea mays] Back     alignment and taxonomy information
>gi|20804871|dbj|BAB92553.1| DNA cross-link repair 1B-like protein [Oryza sativa Japonica Group] gi|125572255|gb|EAZ13770.1| hypothetical protein OsJ_03695 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
TAIR|locus:2015939422 AT1G27410 "AT1G27410" [Arabido 0.411 0.393 0.575 2e-102
UNIPROTKB|F1NF26459 DCLRE1B "5' exonuclease Apollo 0.352 0.309 0.439 1.6e-43
ZFIN|ZDB-GENE-061013-328 571 dclre1b "DNA cross-link repair 0.374 0.264 0.441 3.7e-42
RGD|1310343 541 Dclre1b "DNA cross-link repair 0.374 0.279 0.444 1.4e-41
UNIPROTKB|D2H8V8 529 DCLRE1B "5' exonuclease Apollo 0.374 0.285 0.438 3.7e-41
MGI|MGI:2156057 541 Dclre1b "DNA cross-link repair 0.374 0.279 0.438 5.8e-41
UNIPROTKB|E2RLH4463 DCLRE1B "Uncharacterized prote 0.374 0.326 0.438 7.8e-40
UNIPROTKB|Q9H816 532 DCLRE1B "5' exonuclease Apollo 0.374 0.283 0.432 8.4e-40
UNIPROTKB|E1BFI5 541 DCLRE1B "Uncharacterized prote 0.374 0.279 0.438 1.7e-39
UNIPROTKB|F1SBR3 537 DCLRE1B "Uncharacterized prote 0.374 0.281 0.415 4.1e-39
TAIR|locus:2015939 AT1G27410 "AT1G27410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 529 (191.3 bits), Expect = 2.0e-102, Sum P(2) = 2.0e-102
 Identities = 99/172 (57%), Positives = 122/172 (70%)

Query:     1 MEKGLISVDRWTEGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLS 60
             ME GLISVDRW  GSQ YFLTH+HSDHT+GLS  W++GPL+CSR TA LFP +FPG DLS
Sbjct:     1 MESGLISVDRWRNGSQAYFLTHIHSDHTRGLSGGWSQGPLYCSRTTASLFPSRFPGFDLS 60

Query:    61 LIRVLDIGXXXXXXXXXXXXGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGD 120
             L+RV+ +             G    + ++AIDA+HCPG    S+M LFRGDFGC LYTGD
Sbjct:    61 LLRVVPLFSWTSLSLRSPSSGSTVRLHLMAIDAHHCPG----SIMFLFRGDFGCFLYTGD 116

Query:   121 FRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQI 172
             FRW++  + ++  R TLV A+ +  VDILYLDNTYCN  Y+FPSR VA Q +
Sbjct:   117 FRWDS--DASDEARTTLVAAIDEFPVDILYLDNTYCNPIYSFPSRLVAVQLV 166
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|F1NF26 DCLRE1B "5' exonuclease Apollo" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061013-328 dclre1b "DNA cross-link repair 1B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1310343 Dclre1b "DNA cross-link repair 1B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D2H8V8 DCLRE1B "5' exonuclease Apollo" [Ailuropoda melanoleuca (taxid:9646)] Back     alignment and assigned GO terms
MGI|MGI:2156057 Dclre1b "DNA cross-link repair 1B, PSO2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RLH4 DCLRE1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H816 DCLRE1B "5' exonuclease Apollo" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFI5 DCLRE1B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBR3 DCLRE1B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029224001
SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (426 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
pfam07522107 pfam07522, DRMBL, DNA repair metallo-beta-lactamas 2e-15
pfam12706197 pfam12706, Lactamase_B_2, Beta-lactamase superfami 2e-08
smart00849177 smart00849, Lactamase_B, Metallo-beta-lactamase su 1e-05
COG1236427 COG1236, YSH1, Predicted exonuclease of the beta-l 3e-05
COG0595 555 COG0595, COG0595, mRNA degradation ribonucleases J 4e-04
>gnl|CDD|219448 pfam07522, DRMBL, DNA repair metallo-beta-lactamase Back     alignment and domain information 
 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 32/132 (24%), Positives = 47/132 (35%), Gaps = 33/132 (25%)

Query: 188 HDIFTTKTSLTRVRAVPRYSFSIDTLESLNTM-----HPTIGIMPSGLPWVVKPLKGGGS 242
             + TT  S TR+  VP      + L S            I I P+G  W  +P K    
Sbjct: 4   LSVLTTDPSSTRIHVVPMGKIRYEALLSYLKAFKEHFDSVIAIRPTG--WTFRPPKTNVL 61

Query: 243 LPGSLFSSYQSKWRATGGTQTEKLKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQ 302
                                           R    IY VPYS+HS F+E+++F++ ++
Sbjct: 62  --------------------------DRIKPSRGKITIYGVPYSEHSSFSELKDFVSFLR 95

Query: 303 PSNIRGIVSSSS 314
           P  I   V+  S
Sbjct: 96  PKKIIPTVNVGS 107

The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in pfam00753 and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair. Length = 107
>gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain Back     alignment and domain information
>gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 403
KOG1361481 consensus Predicted hydrolase involved in interstr 100.0
TIGR00649422 MG423 conserved hypothetical protein. Contains an 99.9
TIGR03675630 arCOG00543 arCOG00543 universal archaeal KH-domain 99.89
COG0595555 mRNA degradation ribonucleases J1/J2 (metallo-beta 99.89
COG1236427 YSH1 Predicted exonuclease of the beta-lactamase f 99.89
COG1782637 Predicted metal-dependent RNase, consists of a met 99.83
PF07522110 DRMBL: DNA repair metallo-beta-lactamase; InterPro 99.73
KOG1136501 consensus Predicted cleavage and polyadenylation s 99.68
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 99.66
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 99.64
KOG1137 668 consensus mRNA cleavage and polyadenylation factor 99.62
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 99.61
PRK02113252 putative hydrolase; Provisional 99.61
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 99.54
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 99.53
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 99.51
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 99.5
PRK02126334 ribonuclease Z; Provisional 99.42
PRK00685228 metal-dependent hydrolase; Provisional 99.4
PRK00055270 ribonuclease Z; Reviewed 99.23
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 99.22
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provis 99.21
PRK04286298 hypothetical protein; Provisional 99.15
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 99.08
PRK11921394 metallo-beta-lactamase/flavodoxin domain-containin 99.06
PLN02398329 hydroxyacylglutathione hydrolase 99.04
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 99.04
PLN02469258 hydroxyacylglutathione hydrolase 99.03
PRK05452479 anaerobic nitric oxide reductase flavorubredoxin; 98.98
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactam 98.93
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 98.92
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 98.87
PLN02962251 hydroxyacylglutathione hydrolase 98.86
COG5212356 PDE1 Low-affinity cAMP phosphodiesterase [Signal t 98.83
PF02112335 PDEase_II: cAMP phosphodiesterases class-II; Inter 98.83
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 98.73
KOG1135 764 consensus mRNA cleavage and polyadenylation factor 98.71
COG2220258 Predicted Zn-dependent hydrolases of the beta-lact 98.56
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 98.56
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactam 98.55
KOG0813265 consensus Glyoxylase [General function prediction 98.55
TIGR00361662 ComEC_Rec2 DNA internalization-related competence 98.13
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 98.12
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase 98.04
KOG2121746 consensus Predicted metal-dependent hydrolase (bet 98.01
PRK11539755 ComEC family competence protein; Provisional 97.86
PF0752143 RMMBL: RNA-metabolising metallo-beta-lactamase; In 97.7
COG1237259 Metal-dependent hydrolases of the beta-lactamase s 97.39
KOG0814237 consensus Glyoxylase [General function prediction 96.71
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 96.64
KOG1138 653 consensus Predicted cleavage and polyadenylation s 96.12
COG2248304 Predicted hydrolase (metallo-beta-lactamase superf 95.73
COG2015655 Alkyl sulfatase and related hydrolases [Secondary 93.52
KOG4736302 consensus Uncharacterized conserved protein [Funct 90.85
KOG3798343 consensus Predicted Zn-dependent hydrolase (beta-l 88.11
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-43  Score=360.08  Aligned_cols=268  Identities=38%  Similarity=0.656  Sum_probs=213.6

Q ss_pred             CCCCeEEEcCCCC----CccEEEEcCCchhhhCCccccCCCCcEEeCHhhHhhccccCCCCCccceEeccCCCeEEEEee
Q 040718            1 MEKGLISVDRWTE----GSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVV   76 (403)
Q Consensus         1 ~~~~~i~VD~f~~----~i~aifLTH~H~DHi~GL~~~~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~~~~~i~l~   76 (403)
                      |+++.|.||+|+.    ++.++||||+|+||+.||...|.++++||++.|+.++...+. ++...+++++.++++.+   
T Consensus        95 ~p~~~f~VD~f~~~~~~~~s~yFLsHFHSDHy~GL~~sW~~p~lYCS~ita~Lv~~~~~-v~~~~i~~l~l~~~~~i---  170 (481)
T KOG1361|consen   95 LPGGEFSVDAFRYGHIEGCSAYFLSHFHSDHYIGLTKSWSHPPLYCSPITARLVPLKVS-VTKQSIQALDLNQPLEI---  170 (481)
T ss_pred             cCCCcEEEehhhcCCccccceeeeecccccccccccccccCCcccccccchhhhhhhcc-cChhhceeecCCCceee---
Confidence            4567799999985    456999999999999999999999999999999999988885 77789999999999998   


Q ss_pred             cCCCCCcCceEEEEEecCCCCCCCCceEEEEEEECCe-eEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCCC
Q 040718           77 SPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFG-CLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTY  155 (403)
Q Consensus        77 ~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~~-~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty  155 (403)
                             .++.|++++||||||    |+||+|+...+ ++|||||||+..+|...     +  .......+|.+||||||
T Consensus       171 -------~~~~vt~ldAnHCPG----a~mf~F~~~~~~~~lhtGDFR~s~~m~~~-----p--~~~~~~~i~~lyLDtTy  232 (481)
T KOG1361|consen  171 -------PGIQVTLLDANHCPG----AVMFLFELSFGPCILHTGDFRASADMSKE-----P--ALTLEQTIDILYLDTTY  232 (481)
T ss_pred             -------cceEEEEeccccCCC----ceEEEeecCCCceEEecCCcccChhhhhC-----h--HHhcCCccceEEEeecc
Confidence                   679999999999999    99999999876 99999999999987431     1  11223789999999999


Q ss_pred             CCCCCCCCCHHHHHHH----------------------------------------HhhChhhHHHHHHhcccc--ccc-
Q 040718          156 CNSSYAFPSREVAAQQ----------------------------------------IWVWPERLQTMHLLGFHD--IFT-  192 (403)
Q Consensus       156 ~~p~~~fp~~~~~~~~----------------------------------------I~v~~~r~~~l~~LG~~~--ift-  192 (403)
                      |+|.|+||+|++++++                                        ||++++|+.++.+||..|  .++ 
T Consensus       233 cnp~y~Fpsq~esvq~v~~~i~~~~~~~~~~Li~v~~ysiGkE~l~~eia~~l~~kI~v~~~~~~~~~~lg~~d~~~~~s  312 (481)
T KOG1361|consen  233 CNPKYDFPSQEESVQEVVDVIRSHASKNDRVLIVVGTYSIGKEKLLLEIARILNSKIWVEPRRLRLLQCLGFDDESKLLS  312 (481)
T ss_pred             cCCCCCCccHHHHHHHHHHHHHhhhhhCCceEEEEEEEecchhHHHHHHHHHhCCceEEehhhchhhhhcCCCChhhhhc
Confidence            9999999999998876                                        677889999999999887  334 


Q ss_pred             cCCccCeEEEEeccCCc-HHHHHHHh-----hhcCceeecCCCcceeeccCCCCCCCCCCCccccccccccccccchhhh
Q 040718          193 TKTSLTRVRAVPRYSFS-IDTLESLN-----TMHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEKL  266 (403)
Q Consensus       193 ~~~~~~~i~~vp~~~~~-~~~l~~l~-----~~~~~igi~ptg~~~~~~~~~g~~~~~~~~~s~~~~~~~~~sGw~~~~~  266 (403)
                      .+.....+|++++..+. ...+....     .....+|+.|+||.....-..       .+...     +.        +
T Consensus       313 ~d~~~ssvhv~~~~~l~~~~~l~~~~~~~~~~~s~~v~~~~tgwt~~~~~s~-------~~~~~-----~~--------~  372 (481)
T KOG1361|consen  313 IDVDESSVHVVPMNSLASSPSLKEYESQYEDGYSKLVGFSPTGWTKGKLVSL-------DKENS-----RP--------Q  372 (481)
T ss_pred             cccccCceeEeehhhhccccchhhhhcccccCcceeEeeccccccccccccc-------Ccccc-----cc--------c
Confidence            47788899999987655 34443332     234568999999764311000       00000     00        0


Q ss_pred             hhccCcceeecceEEeeeccCCCCHHHHHHHHHHhCCCEEEEccCCCCccc
Q 040718          267 KEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCYV  317 (403)
Q Consensus       267 ~~~~~~~~r~~~~~~~VpySdHss~~EL~~fV~~~~P~~Vi~tv~~s~~~~  317 (403)
                      .+       ....++.+|||+||+|.||.+|++.++|+.|||||+.+..+.
T Consensus       373 ~~-------~~i~~~~vpYseHSs~~el~~f~~~lk~k~iiptv~~~~~~~  416 (481)
T KOG1361|consen  373 SG-------SKIPISLVPYSEHSSYTELSEFLSKLKPKTIIPTVNEDTELS  416 (481)
T ss_pred             cc-------cccccccccccccCCHHHHHHHHHhcCCCeeecCccCCcccc
Confidence            00       034678999999999999999999999999999999876443

>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs Back     alignment and domain information
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>KOG0813 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>KOG0814 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG4736 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
3zdk_A336 Crystal Structure Of Human 5' Exonuclease Apollo Le 6e-35
4b87_A367 Crystal Structure Of Human Dna Cross-Link Repair 1a 8e-22
>pdb|3ZDK|A Chain A, Crystal Structure Of Human 5' Exonuclease Apollo Length = 336 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (364), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 153/350 (43%), Gaps = 97/350 (27%)
Query: 6   ISVDRWT----EGSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSL 61
           I+VD W+      ++++FL+H+HSDHT GLSS WAR PL+CS +TA L       +    
Sbjct: 12  IAVDFWSLRRAGTARLFFLSHMHSDHTVGLSSTWAR-PLYCSPITAHLLHRHL-QVSKQW 69
Query: 62  IRVLDIGXXXXXXXXXXXXGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDF 121
           I+ L++G            G++T   V  +DANHCPG    SVM LF G FG +LYTGDF
Sbjct: 70  IQALEVG--ESHVLPLDEIGQETMT-VTLLDANHCPG----SVMFLFEGYFGTILYTGDF 122
Query: 122 RWEASNERAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPSREVAAQQI--------- 172
           R+  S  +      TL K      +  LYLDNT CN +   PSR+ AA QI         
Sbjct: 123 RYTPSMLKEP--ALTLGKQ-----IHTLYLDNTNCNPALVLPSRQEAAHQIVQLIRKHPQ 175
Query: 173 -------------------------WVW--PERLQTMHLLGFHDIFTTKTSLTRVRAVPR 205
                                    WV   P RL+ + LLG  D+FT +    R+ AV  
Sbjct: 176 HNIKIGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLADVFTVEEKAGRIHAVDH 235
Query: 206 YSFSIDTLESLNTMHPTIGIMPSGLPWVVXXXXXXXXXXXXXXXXYQSKWRATGGTQTEK 265
                  +   N  HPTI I+P+                                  + K
Sbjct: 236 MEICHSNMLRWNQTHPTIAILPT----------------------------------SRK 261
Query: 266 LKEALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSC 315
           +  +       H  I+ +PYSDHS ++E+  F+  ++P  +  IVS   C
Sbjct: 262 IHSS-------HPDIHVIPYSDHSSYSELRAFVAALKPCQVVPIVSRRPC 304
>pdb|4B87|A Chain A, Crystal Structure Of Human Dna Cross-Link Repair 1a Length = 367 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
2az4_A429 Hypothetical protein EF2904; structural genomics, 6e-07
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 1e-04
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 2e-04
2ycb_A636 Beta-CAsp RNAse, cleavage and polyadenylation spec 4e-04
2xr1_A640 Cleavage and polyadenylation specificity factor 1 9e-04
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Length = 429 Back     alignment and structure
 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 19/163 (11%)

Query: 19  FLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVL-DIGSWHSISVVS 77
           FL+H H DH++ ++      PL+  + T  +        D  +     +      +  ++
Sbjct: 89  FLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLN 148

Query: 78  PSSGEK---TFVEVIAIDANH-CPGILGCSVMLLFRGDFGCLLYTGDFR-----WEASNE 128
            +   K     VE++ +  +H   G    +  LL R     + YTGD R      E +  
Sbjct: 149 KNDVIKVGEISVEIVPV--DHDAYG----ASALLIRTPDHFITYTGDLRLHGHNREETLA 202

Query: 129 RAEIGRNTLVKALKDDVVDILYLDNTYCNSSYAFPS-REVAAQ 170
             E  ++   + L  + V I + +     +  A  S  ++   
Sbjct: 203 FCEKAKH--TELLMMEGVSISFPEREPDPAQIAVVSEEDLVQH 243
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Length = 258 Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
4b87_A367 DNA cross-LINK repair 1A protein; dclre1A, DCLRE, 100.0
3zdk_A336 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A 100.0
3zq4_A555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 99.94
2i7t_A459 Cleavage and polyadenylation specificity factor 73 99.92
2az4_A429 Hypothetical protein EF2904; structural genomics, 99.92
3bk2_A562 RNAse J, metal dependent hydrolase; endoribonuclea 99.91
3af5_A651 Putative uncharacterized protein PH1404; archaeal 99.89
2ycb_A636 Beta-CAsp RNAse, cleavage and polyadenylation spec 99.89
2xr1_A640 Cleavage and polyadenylation specificity factor 1 99.89
3iek_A431 Ribonuclease TTHA0252; metallo beta lactamase fold 99.88
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 99.69
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 99.64
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 99.63
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 99.62
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 99.62
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 99.61
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 99.58
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 99.52
3rpc_A264 Possible metal-dependent hydrolase; structural gen 99.47
3kl7_A235 Putative metal-dependent hydrolase; structural gen 99.41
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 99.41
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 99.36
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 99.35
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 99.32
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 99.32
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 99.26
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 99.25
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 99.23
1e5d_A402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 99.23
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 99.2
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 99.2
3adr_A261 Putative uncharacterized protein ST1585; quorum se 99.2
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 99.19
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase s 99.18
2ohh_A404 Type A flavoprotein FPRA; beta-lactamase like doma 99.18
1ycg_A398 Nitric oxide reductase; DIIRON site, oxidoreductas 99.17
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 99.16
3esh_A280 Protein similar to metal-dependent hydrolase; stru 99.15
3tp9_A474 Beta-lactamase and rhodanese domain protein; struc 99.15
1ztc_A221 Hypothetical protein TM0894; structural genomics, 99.14
4efz_A298 Metallo-beta-lactamase family protein; structural 99.14
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 99.13
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 99.13
1xm8_A254 Glyoxalase II; structural genomics, protein struct 99.12
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 99.11
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 99.11
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 99.1
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 99.09
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 99.09
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 99.07
3r2u_A466 Metallo-beta-lactamase family protein; structural 99.07
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 99.07
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 99.06
2q9u_A414 A-type flavoprotein; flavodoxin like, beta lactama 99.06
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 99.04
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 99.04
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 99.04
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 99.04
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 99.03
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 99.01
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 98.97
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 98.91
4dik_A410 Flavoprotein; TM0755, electron transport, DI-iron 98.89
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 98.87
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 98.81
2bib_A547 CBPE, teichoic acid phosphorylcholine esterase/ ch 98.76
2cfu_A658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 98.63
2p97_A201 Hypothetical protein; putative metal-dependent hyd 98.6
2yhe_A668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 97.44
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 98.11
3h3e_A267 Uncharacterized protein TM1679; structural genomic 96.64
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.2e-45  Score=369.85  Aligned_cols=277  Identities=30%  Similarity=0.493  Sum_probs=215.3

Q ss_pred             CCCeEEEcCCCC----CccEEEEcCCchhhhCCccccCCCCcEEeCHhhHhhccccCCCCCccceEeccCCCeEEEEeec
Q 040718            2 EKGLISVDRWTE----GSQVYFLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVS   77 (403)
Q Consensus         2 ~~~~i~VD~f~~----~i~aifLTH~H~DHi~GL~~~~~~~pIy~s~~T~~lL~~~~~~~~~~~i~~l~~~~~~~i~l~~   77 (403)
                      ++..|+||+|+.    .+++|||||+|.||++||+.. .++||||++.|++++...+. .....+.+++.++++.+    
T Consensus        35 pG~~ilVD~f~~~~~~~IdaI~lTH~H~DHiggl~~~-~~~pIy~s~~t~~ll~~~l~-~~~~~~~~l~~g~~~~i----  108 (367)
T 4b87_A           35 PGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKH-FTFPVYCSEITGNLLKNKLH-VQEQYIHPLPLDTECIV----  108 (367)
T ss_dssp             TTSSEEESCCSSSSCTTCCEEECCCCCHHHHTTCSTT-CCSCEEECHHHHHHHHHHSC-CCGGGEEECCBTSCEEE----
T ss_pred             CCCeEEEeCCCcCCccCCcEEEECcChHHHhCCcccc-cCCcEEECHHHHHHHHHHhc-cccceEEEeCCCCEEEE----
Confidence            455799999983    689999999999999999964 57899999999999987663 44456788899999887    


Q ss_pred             CCCCCcCceEEEEEecCCCCCCCCceEEEEEEECCe-eEEEECCcCcCCCchhhhccchhhhhhccCCCccEEEEcCCCC
Q 040718           78 PSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFG-CLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDILYLDNTYC  156 (403)
Q Consensus        78 ~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~~-~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvLilD~Ty~  156 (403)
                            ++++|+++++||+||    |++|+|+.+++ +++||||+++.+.+         ....+...++|+||+||||+
T Consensus       109 ------g~~~v~~~~agH~~g----s~~~~i~~~~g~~il~tGD~~~~~~~---------~~~~l~~~~~D~Li~EsTy~  169 (367)
T 4b87_A          109 ------NGVKVVLLDANHCPG----AVMILFYLPNGTVILHTGDFRADPSM---------ERSLLADQKVHMLYLDTTYC  169 (367)
T ss_dssp             ------TTEEEEEEECSSSTT----CEEEEEECTTSCEEEECCSCCCCGGG---------GGSGGGTSCCCEEEECCTTC
T ss_pred             ------CCEEEEEEeCCCcCC----cEEEEEEcCCCcEEEEecCcccCccc---------chhhhccCCCCEEEEecccC
Confidence                  899999999999999    99999997544 69999999998764         12345456899999999999


Q ss_pred             CCCCCCCCHHHHHHH----------------------------------------HhhChhhHHHHHHhcccc---cccc
Q 040718          157 NSSYAFPSREVAAQQ----------------------------------------IWVWPERLQTMHLLGFHD---IFTT  193 (403)
Q Consensus       157 ~p~~~fp~~~~~~~~----------------------------------------I~v~~~r~~~l~~LG~~~---ift~  193 (403)
                      +|.+.||+++++.++                                        |++..++++++.+|+.++   +||+
T Consensus       170 ~~~~~~ps~~~~~~~~~~~i~~~~~~~g~~~v~~~a~~igr~q~ll~ia~~~g~ki~v~~~~~~il~~l~~~~~~~~~t~  249 (367)
T 4b87_A          170 SPEYTFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEINSLITT  249 (367)
T ss_dssp             STTCCCCCHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSCCHHHHHHHHHHTTCCEECCHHHHHHHHTTCCTTHHHHEES
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhCCEEEEeHHHHHHHHhcCCchhhhhccc
Confidence            999999999887652                                        234456677888888876   6999


Q ss_pred             CCccCeEEEEeccCCcHHHHHHHhh-----hcCceeecCCCcceeeccCCCCCCCCCCCccccccccccccccchhhhhh
Q 040718          194 KTSLTRVRAVPRYSFSIDTLESLNT-----MHPTIGIMPSGLPWVVKPLKGGGSLPGSLFSSYQSKWRATGGTQTEKLKE  268 (403)
Q Consensus       194 ~~~~~~i~~vp~~~~~~~~l~~l~~-----~~~~igi~ptg~~~~~~~~~g~~~~~~~~~s~~~~~~~~~sGw~~~~~~~  268 (403)
                      ++..++||++|++.+..++|..+..     +.+.+||+||||.+..+..         +...+                 
T Consensus       250 d~~~~~vh~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~ptgw~~~~~~~---------~~~~~-----------------  303 (367)
T 4b87_A          250 DMCSSLVHLLPMMQINFKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFT---------RIADV-----------------  303 (367)
T ss_dssp             CGGGCSEEEEEGGGCSHHHHHHHHHSGGGCCCEEEEEEECC-------------------CCC-----------------
T ss_pred             CCccceEEEeecCcCCHHHHHHHHHHhhcccccEEEEcCcccccCCCCC---------ccccc-----------------
Confidence            9999999999999988888876432     3457899999976542110         00000                 


Q ss_pred             ccCcceeecceEEeeeccCCCCHHHHHHHHHHhCCCEEEEccCCCCcc-cChh-hHHHHHHhhcC
Q 040718          269 ALGSVDRFHKYIYSVPYSDHSCFTEIEEFLNLVQPSNIRGIVSSSSCY-VDPL-YYFGRLCRANQ  331 (403)
Q Consensus       269 ~~~~~~r~~~~~~~VpySdHss~~EL~~fV~~~~P~~Vi~tv~~s~~~-~~~~-~~f~~~~~~~~  331 (403)
                        .+..+.+...|+|||||||||.||.+||++++|++|||||+..+.. ++.| .||.+|..+.+
T Consensus       304 --~~~~~~~~~~~~vpySeHss~~EL~~fv~~l~p~~iiptv~~~~~~~~~~m~~~~~~w~~~~~  366 (367)
T 4b87_A          304 --IPQTKGNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRSTMEKYFREWKLEAG  366 (367)
T ss_dssp             --CCEEETTEEEEEECCCSSCCHHHHHHHHHHHCCSEEEECSSCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             --ccccCCceEEEEEeccCCCCHHHHHHHHHhcCCCeEECeecCCCHHHHHHHHHHHHHHHhhcC
Confidence              0111224568999999999999999999999999999999876533 3444 88998887654
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A Back     alignment and structure
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 403
d2az4a1183 d.157.1.10 (A:56-238) Hypothetical protein EF2904 9e-10
d2i7ta1451 d.157.1.10 (A:9-459) Cleavage and polyadenylation 9e-09
d2i7xa1514 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two 2e-06
d2dkfa1431 d.157.1.10 (A:1-431) Putative RNA-degradation prot 6e-05
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Hypothetical protein EF2904
species: Enterococcus faecalis [TaxId: 1351]

 Score = 55.4 bits (132), Expect = 9e-10
 Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 7/152 (4%)

Query: 19  FLTHLHSDHTQGLSSAWARGPLFCSRLTAKLFPLKFPGLDLSLIRVLDIGSWHSISVVSP 78
           FL+H H DH++ ++      PL+  + T  +        D  +    +  ++    ++  
Sbjct: 34  FLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFT-REMIGL 92

Query: 79  SSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLV 138
           +  +   V  I+++          +  LL R     + YTGD R        E       
Sbjct: 93  NKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHG--HNREETLA-FC 149

Query: 139 KALKDDVVDILYLDNTYCNSSYAFPS-REVAA 169
           +  K    ++L ++    +     P   ++A 
Sbjct: 150 EKAKH--TELLMMEGVSISFPEREPDPAQIAV 179
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
d2i7ta1451 Cleavage and polyadenylation specificity factor su 99.94
d2dkfa1431 Putative RNA-degradation protein TTHA0252 {Thermus 99.9
d2i7xa1514 Cleavage factor two protein 2, CFT2 {Baker's yeast 99.87
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 99.81
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 99.58
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 99.34
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId 99.31
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 99.11
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 99.04
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 99.03
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.01
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 99.0
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 98.99
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomona 98.97
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax 98.97
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 98.94
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 98.94
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 98.93
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [ 98.89
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 98.88
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 98.87
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 98.84
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 98.84
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 98.78
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.78
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.63
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 98.63
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 98.53
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD 98.39
d2cfua2505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 98.36
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 97.76
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage and polyadenylation specificity factor subunit 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.2e-27  Score=232.37  Aligned_cols=134  Identities=20%  Similarity=0.332  Sum_probs=100.1

Q ss_pred             CccEEEEcCCchhhhCCcccc----CCCCcEEeCHhhHhhccccCCC------CC--------------ccceEeccCCC
Q 040718           14 GSQVYFLTHLHSDHTQGLSSA----WARGPLFCSRLTAKLFPLKFPG------LD--------------LSLIRVLDIGS   69 (403)
Q Consensus        14 ~i~aifLTH~H~DHi~GL~~~----~~~~pIy~s~~T~~lL~~~~~~------~~--------------~~~i~~l~~~~   69 (403)
                      .+++|||||+|.||++||+.+    ++++|||||+.|++++...+..      ..              ...+..+.+++
T Consensus        55 ~id~i~lTH~H~DH~ggLp~l~~~~~~~~pIy~s~~T~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (451)
T d2i7ta1          55 EIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHE  134 (451)
T ss_dssp             GCCEEECCCSSHHHHTTHHHHHHHSSCCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTC
T ss_pred             hCCEEEECCCcHHHhCchHHHHHhcCCCCCEEechhHhhhhhhhhhhhhhhhhcccccccCcHHHHHHhhhhcceecCCc
Confidence            368999999999999999865    4689999999999998643210      00              01345566677


Q ss_pred             eEEEEeecCCCCCcCceEEEEEecCCCCCCCCceEEEEEEECCeeEEEECCcCcCCCchhhhccchhhhhhccCCCccEE
Q 040718           70 WHSISVVSPSSGEKTFVEVIAIDANHCPGILGCSVMLLFRGDFGCLLYTGDFRWEASNERAEIGRNTLVKALKDDVVDIL  149 (403)
Q Consensus        70 ~~~i~l~~~~~~~~~~v~Vt~~~A~H~pG~~~~Sv~fl~e~~~~~vlyTGD~r~~~~~~~~~~~~~~ll~~l~~~~~DvL  149 (403)
                      +..+          +++.|+++++|||||    |++|+|+.++++++||||++..+...       .....+...++|+|
T Consensus       135 ~~~~----------~~~~v~~~~~~H~~G----s~~~~i~~~~~~i~~tgD~~~~~~~~-------~~~~~~~~~~~~~l  193 (451)
T d2i7ta1         135 VKEV----------AGIKFWCYHAGHVLG----AAMFMIEIAGVKLLYTGDFSRQEDRH-------LMAAEIPNIKPDIL  193 (451)
T ss_dssp             CEEE----------TTEEEEEEECCSSTT----CEEEEEEETTEEEEECCSCCCC------------CCCCCCSSCCSEE
T ss_pred             eEee----------CCEEEEEeccCCCCC----ceeEEeecCCceEEecCCCCCCCCcc-------ccccccccccccee
Confidence            7665          889999999999999    99999999999999999999876531       11122334688999


Q ss_pred             EEcCCCCCCCCCCCCHHHHHH
Q 040718          150 YLDNTYCNSSYAFPSREVAAQ  170 (403)
Q Consensus       150 ilD~Ty~~p~~~fp~~~~~~~  170 (403)
                      ++++||+.+  .+|+.++...
T Consensus       194 ~~~~~~~~~--~~~~~~~~~~  212 (451)
T d2i7ta1         194 IIESTYGTH--IHEKREEREA  212 (451)
T ss_dssp             EEECTTTTC--CCCCHHHHHH
T ss_pred             EeecccCcc--ccccchhHHh
Confidence            999999876  4566655443
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure