Citrus Sinensis ID: 040780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAaltndpadVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML
Flexible Loop (DISEMBL)
MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML
Low Complexity Region (SEG)
MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML
Disordered region (IsUnstruct)
********LRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCL***
Disordered Region (DISOPRED)
****EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML
Disordered Region (DISEMBL)
********LRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML
Disordered Region (DISPRO)
*REEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
B3DNN5	543	Anaphase-promoting comple	yes	no	1.0	0.174	0.947	3e-48
Q8R349	620	Cell division cycle prote	yes	no	0.947	0.145	0.439	2e-10
Q13042	620	Cell division cycle prote	yes	no	0.947	0.145	0.428	2e-10
P09798	840	Anaphase-promoting comple	yes	no	0.947	0.107	0.288	1e-05
P41889	671	Anaphase-promoting comple	yes	no	0.852	0.120	0.345	6e-05

>sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1

 Score =  189 bits (481), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/95 (94%), Positives = 94/95 (98%)

Query: 1  MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFH 60
          MREEEIEK+RGVVRDCVSKHLYSSAIFFADKVAALTNDP+D+YMQAQALFLGRHYRRAFH
Sbjct: 1  MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFH 60

Query: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
          LLNASKIVLRDLRFRYLAAKCLEELKEW+QCL ML
Sbjct: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLML 95

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 6  IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64
          +E LR  VR  + +  Y SA+F+ADKVA+L++ +P DVY  AQ L+L   Y RA H L +
Sbjct: 3  LEPLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDVYWLAQCLYLTAQYHRAAHALRS 62

Query: 65 SKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
           K+       RYLAA+C    KE +Q L +L
Sbjct: 63 RKLDKLYEACRYLAARCHYAAKEHQQALDIL 93

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16 PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 6  IEKLRGVVRDCVSKHLYSSAIFFADKVAALT-NDPADVYMQAQALFLGRHYRRAFHLLNA 64
          +E+LR  VR  + +  Y SA+F+ADKVA+L+  +P D+Y  AQ L+L   Y RA H L +
Sbjct: 3  LERLRKRVRQYLDQQQYQSALFWADKVASLSREEPQDIYWLAQCLYLTAQYHRAAHALRS 62

Query: 65 SKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
           K+       RYLAA+C    KE +Q L +L
Sbjct: 63 RKLDKLYEACRYLAARCHYAAKEHQQALDVL 93

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Homo sapiens (taxid: 9606)

>sp|P09798|CDC16_YEAST Anaphase-promoting complex subunit CDC16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC16 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 6   IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS 65
           IE+LR    D + +H+Y +A + ADKV  ++NDP D +   Q  +    Y RA  L+  +
Sbjct: 230 IERLRLWRFDALMQHMYRTAEYIADKVYNISNDPDDAFWLGQVYYNNNQYVRAVELITRN 289

Query: 66  KIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
            +   ++  RYL      +L+ ++  L ++
Sbjct: 290 NLDGVNILCRYLLGLSFVKLQRFDDALDVI 319

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. In early mitosis, the APC/C is activated by CDC20 and targets securin PDS1, the B-type cyclin CLB5, and other anaphase inhibitory proteins for proteolysis, thereby triggering the separation of sister chromatids at the metaphase-to-anaphase transition. In late mitosis and in G1, degradation of CLB5 allows activation of the APC/C by CDH1, which is needed to destroy CDC20 and the B-type cyclin CLB2 to allow exit from mitosis and creating the low CDK state necessary for cytokinesis and for reforming prereplicative complexes in G1 prior to another round of replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P41889|CUT9_SCHPO Anaphase-promoting complex subunit cut9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut9 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%)

Query: 15  DCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRF 74
           D + +  Y  A F  +KV  +T +P D +  AQ       Y RA  LL    +  R    
Sbjct: 93  DALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSAC 152

Query: 75  RYLAAKCLEELKEWEQCLSML 95
           RYLAA CL +L +W+  L++L
Sbjct: 153 RYLAAFCLVKLYDWQGALNLL 173

Component of the anaphase-promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. May play a pivotal role in the control of anaphase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
297839749	543	cell division cycle family protein [Arab	1.0	0.174	0.957	6e-47
3834317	521	Similar to CDC16 protein gb|U18291 (CDC1	1.0	0.182	0.947	1e-46
18412102	543	anaphase-promoting complex subunit 6 [Ar	1.0	0.174	0.947	1e-46
22324595	542	anaphase promoting complex/cyclosome sub	1.0	0.175	0.947	1e-46
224116978	542	predicted protein [Populus trichocarpa]	1.0	0.175	0.936	6e-46
255565311	655	cell division cycle, putative [Ricinus c	1.0	0.145	0.936	9e-46
356545461	547	PREDICTED: anaphase-promoting complex su	1.0	0.173	0.936	1e-45
356517052	545	PREDICTED: anaphase-promoting complex su	1.0	0.174	0.936	1e-45
255578574	469	cell division cycle, putative [Ricinus c	1.0	0.202	0.926	2e-45
225461701	545	PREDICTED: anaphase-promoting complex su	1.0	0.174	0.915	2e-44

>gi|297839749|ref|XP_002887756.1| cell division cycle family protein [Arabidopsis lyrata subsp. lyrata] gi|297333597|gb|EFH64015.1| cell division cycle family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  191 bits (484), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 91/95 (95%), Positives = 94/95 (98%)

Query: 1  MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFH 60
          MREEEIEK+RGVVRDCVSKHLYSSAIFFADKVAALTNDPAD+YMQAQALFLGRHYRRAFH
Sbjct: 1  MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPADIYMQAQALFLGRHYRRAFH 60

Query: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
          LLNASKIVLRDLRFRYLAAKCLEELKEW+QCL ML
Sbjct: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLML 95

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3834317|gb|AAC83033.1| Similar to CDC16 protein gb|U18291 (CDC16Hs) from Homo sapiens [Arabidopsis thaliana]

 Score =  190 bits (482), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/95 (94%), Positives = 94/95 (98%)

Query: 1  MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFH 60
          MREEEIEK+RGVVRDCVSKHLYSSAIFFADKVAALTNDP+D+YMQAQALFLGRHYRRAFH
Sbjct: 1  MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFH 60

Query: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
          LLNASKIVLRDLRFRYLAAKCLEELKEW+QCL ML
Sbjct: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLML 95

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412102|ref|NP_565188.1| anaphase-promoting complex subunit 6 [Arabidopsis thaliana] gi|302595634|sp|B3DNN5.1|CDC16_ARATH RecName: Full=Anaphase-promoting complex subunit 6; AltName: Full=Cell division cycle protein 16 homolog; Short=CDC16 homolog; AltName: Full=Cyclosome subunit 6; AltName: Full=Protein NOMEGA gi|190016006|gb|ACE62891.1| At1g78770 [Arabidopsis thaliana] gi|332198027|gb|AEE36148.1| anaphase-promoting complex subunit 6 [Arabidopsis thaliana]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/95 (94%), Positives = 94/95 (98%)

Query: 1  MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFH 60
          MREEEIEK+RGVVRDCVSKHLYSSAIFFADKVAALTNDP+D+YMQAQALFLGRHYRRAFH
Sbjct: 1  MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFH 60

Query: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
          LLNASKIVLRDLRFRYLAAKCLEELKEW+QCL ML
Sbjct: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLML 95

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22324595|gb|AAM95623.1| anaphase promoting complex/cyclosome subunit [Arabidopsis thaliana]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/95 (94%), Positives = 94/95 (98%)

Query: 1  MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFH 60
          MREEEIEK+RGVVRDCVSKHLYSSAIFFADKVAALTNDP+D+YMQAQALFLGRHYRRAFH
Sbjct: 1  MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFH 60

Query: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
          LLNASKIVLRDLRFRYLAAKCLEELKEW+QCL ML
Sbjct: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLML 95

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116978|ref|XP_002331799.1| predicted protein [Populus trichocarpa] gi|222874495|gb|EEF11626.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (476), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 93/95 (97%)

Query: 1  MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFH 60
          MREE+IEKLRGVVRDCVSKHLYSSAIFFADKVAA TNDPAD+YMQAQALFLGRHYRRA+H
Sbjct: 1  MREEQIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTNDPADIYMQAQALFLGRHYRRAYH 60

Query: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
          LLNASKIVLRDLRFRYLAAKCLEELKEW+QCL ML
Sbjct: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLML 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565311|ref|XP_002523647.1| cell division cycle, putative [Ricinus communis] gi|223537099|gb|EEF38733.1| cell division cycle, putative [Ricinus communis]

 Score =  187 bits (474), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 92/95 (96%)

Query: 1  MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFH 60
          MREE+IEKLRGVVRDCVSKHLYSSAIFFADKVA  TNDPAD+YMQAQALFLGRHYRRAFH
Sbjct: 1  MREEQIEKLRGVVRDCVSKHLYSSAIFFADKVATFTNDPADIYMQAQALFLGRHYRRAFH 60

Query: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
          LLNASKIVLRDLRFRYLAAKCLEELKEW+QCL ML
Sbjct: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLML 95

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545461|ref|XP_003541161.1| PREDICTED: anaphase-promoting complex subunit 6-like [Glycine max]

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 92/95 (96%)

Query: 1  MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFH 60
          MREEE+EKLRGVVRDCVSKHLYSSAIFFADKVAA T DPAD+YMQAQALFLGRHYRRAFH
Sbjct: 1  MREEEMEKLRGVVRDCVSKHLYSSAIFFADKVAAFTADPADIYMQAQALFLGRHYRRAFH 60

Query: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
          LLNASKIVL DLRFRYLAAKCLEELKEW+QCLSML
Sbjct: 61 LLNASKIVLTDLRFRYLAAKCLEELKEWDQCLSML 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517052|ref|XP_003527204.1| PREDICTED: anaphase-promoting complex subunit 6-like [Glycine max]

 Score =  186 bits (472), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 92/95 (96%)

Query: 1  MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFH 60
          MREEE+EKLRGVVRDCVSKHLYSSAIFFADKVAA T DPAD+YMQAQALFLGRHYRRAFH
Sbjct: 1  MREEEMEKLRGVVRDCVSKHLYSSAIFFADKVAAFTADPADIYMQAQALFLGRHYRRAFH 60

Query: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
          LLNASKIVL DLRFRYLAAKCLEELKEW+QCLSML
Sbjct: 61 LLNASKIVLTDLRFRYLAAKCLEELKEWDQCLSML 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578574|ref|XP_002530149.1| cell division cycle, putative [Ricinus communis] gi|223530348|gb|EEF32241.1| cell division cycle, putative [Ricinus communis]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/95 (92%), Positives = 92/95 (96%)

Query: 1  MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFH 60
          MREE+IEKLRGVVRDCVSKHLYSSAIFFADKVA  TNDPAD+YMQAQALFLGRH+RRAFH
Sbjct: 1  MREEQIEKLRGVVRDCVSKHLYSSAIFFADKVATFTNDPADIYMQAQALFLGRHFRRAFH 60

Query: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
          LLNASKIVLRDLRFRYLAAKCLEELKEW+QCL ML
Sbjct: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLML 95

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461701|ref|XP_002283201.1| PREDICTED: anaphase-promoting complex subunit 6 [Vitis vinifera] gi|302142883|emb|CBI20178.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/95 (91%), Positives = 92/95 (96%)

Query: 1  MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFH 60
          MREEEIEKLRGVVRDC+SKHLYSSAIFFADKVAA T+DPAD+YMQAQALFLGRHYRRAFH
Sbjct: 1  MREEEIEKLRGVVRDCLSKHLYSSAIFFADKVAAFTSDPADIYMQAQALFLGRHYRRAFH 60

Query: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
          LLNAS+IVLRDLRFRYLAAKCLEE KEW+QCL ML
Sbjct: 61 LLNASQIVLRDLRFRYLAAKCLEEQKEWDQCLLML 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:2037523	543	APC6 "anaphase promoting compl	1.0	0.174	0.947	7.1e-45
UNIPROTKB|E1BPM5	620	CDC16 "Uncharacterized protein	0.947	0.145	0.439	3.1e-12
RGD|1305076	620	Cdc16 "cell division cycle 16"	0.947	0.145	0.439	4e-12
UNIPROTKB|F1P4A5	623	CDC16 "Uncharacterized protein	0.947	0.144	0.428	5.1e-12
ZFIN|ZDB-GENE-051113-132	616	cdc16 "cell division cycle 16	0.947	0.146	0.406	6.4e-12
UNIPROTKB|E2R5H6	620	CDC16 "Uncharacterized protein	0.947	0.145	0.428	6.5e-12
UNIPROTKB|Q13042	620	CDC16 "Cell division cycle pro	0.947	0.145	0.428	8.3e-12
MGI|MGI:1917207	620	Cdc16 "CDC16 cell division cyc	0.947	0.145	0.439	1.1e-11
UNIPROTKB|I3L944	620	CDC16 "Uncharacterized protein	0.778	0.119	0.453	1.2e-09
UNIPROTKB|G4N150	664	MGG_07440 "Anaphase-promoting	0.915	0.131	0.390	3.5e-09

TAIR|locus:2037523 APC6 "anaphase promoting complex 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 90/95 (94%), Positives = 94/95 (98%)

Query:     1 MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFH 60
             MREEEIEK+RGVVRDCVSKHLYSSAIFFADKVAALTNDP+D+YMQAQALFLGRHYRRAFH
Sbjct:     1 MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFH 60

Query:    61 LLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
             LLNASKIVLRDLRFRYLAAKCLEELKEW+QCL ML
Sbjct:    61 LLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLML 95

GO:0005634 "nucleus" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0032875 "regulation of DNA endoreduplication" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0007276 "gamete generation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009555 "pollen development" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016568 "chromatin modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|E1BPM5 CDC16 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 40/91 (43%), Positives = 56/91 (61%)

Query:     6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64
             +E+LR  VR  + +  Y SA+F+ADKVA+L++ DP D+Y  AQ L+L   Y RA H L +
Sbjct:     3 LERLRKRVRQYLDQQQYQSALFWADKVASLSHEDPRDIYWLAQCLYLTAQYHRAAHALRS 62

Query:    65 SKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
              K+       RYLAA+C    KE +Q L +L
Sbjct:    63 RKLDKLYEACRYLAARCHFAAKEHQQALDIL 93

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

RGD|1305076 Cdc16 "cell division cycle 16" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 4.0e-12, P = 4.0e-12
 Identities = 40/91 (43%), Positives = 56/91 (61%)

Query:     6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNA 64
             +E LR  VR  + +  Y SA+F+ADKVA+L+++ P DVY  AQ L+L   Y RA H L +
Sbjct:     3 LEPLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDVYWLAQCLYLTAQYHRAAHALRS 62

Query:    65 SKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
              K+       RYLAA+C    KE++Q L +L
Sbjct:    63 RKLDKLYEACRYLAARCHYAAKEYQQALDIL 93

GO:0005634 "nucleus" evidence=ISO

GO:0005680 "anaphase-promoting complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005876 "spindle microtubule" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA;ISO

UNIPROTKB|F1P4A5 CDC16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 39/91 (42%), Positives = 56/91 (61%)

Query:     6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNA 64
             +E+LR  VR  + +  Y SA+F+ADKVA+L+++ P D+Y  AQ L+L   Y RA H L +
Sbjct:     3 LERLRKRVRHYIDQQQYQSALFWADKVASLSHEEPQDIYWLAQCLYLTAQYHRAAHALRS 62

Query:    65 SKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
              K+       RYLAA+C    KE +Q L +L
Sbjct:    63 RKLDKLYEACRYLAARCHYAAKEHQQALDIL 93

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

ZFIN|ZDB-GENE-051113-132 cdc16 "cell division cycle 16 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 37/91 (40%), Positives = 57/91 (62%)

Query:     6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA 64
             +++LR  VR  + +  Y SA+F+ADK+A+L++ DP D+Y  AQ L+L   Y RA H L +
Sbjct:     3 LDRLRKRVRHYIDQQQYQSALFWADKIASLSHEDPQDIYWLAQCLYLTAQYHRASHALRS 62

Query:    65 SKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
              K+       +YLAA+C    KE++Q L +L
Sbjct:    63 RKLDKLYGACQYLAARCHYAAKEYQQALDIL 93

GO:0007049 "cell cycle" evidence=IMP

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|E2R5H6 CDC16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 171 (65.3 bits), Expect = 6.5e-12, P = 6.5e-12
 Identities = 39/91 (42%), Positives = 56/91 (61%)

Query:     6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNA 64
             +E+LR  VR  + +  Y SA+F+ADKVA+L+++ P D+Y  AQ L+L   Y RA H L +
Sbjct:     3 LERLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDIYWLAQCLYLTAQYHRAAHALRS 62

Query:    65 SKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
              K+       RYLAA+C    KE +Q L +L
Sbjct:    63 RKLDKLYEACRYLAARCHYAAKEHQQALDIL 93

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|Q13042 CDC16 "Cell division cycle protein 16 homolog" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 8.3e-12, P = 8.3e-12
 Identities = 39/91 (42%), Positives = 55/91 (60%)

Query:     6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNA 64
             +E+LR  VR  + +  Y SA+F+ADKVA+L+ + P D+Y  AQ L+L   Y RA H L +
Sbjct:     3 LERLRKRVRQYLDQQQYQSALFWADKVASLSREEPQDIYWLAQCLYLTAQYHRAAHALRS 62

Query:    65 SKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
              K+       RYLAA+C    KE +Q L +L
Sbjct:    63 RKLDKLYEACRYLAARCHYAAKEHQQALDVL 93

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0005819 "spindle" evidence=TAS

GO:0007088 "regulation of mitosis" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005813 "centrosome" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1917207 Cdc16 "CDC16 cell division cycle 16" [Mus musculus (taxid:10090)]

 Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 40/91 (43%), Positives = 55/91 (60%)

Query:     6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNA 64
             +E LR  VR  + +  Y SA+F+ADKVA+L+++ P DVY  AQ L+L   Y RA H L +
Sbjct:     3 LEPLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDVYWLAQCLYLTAQYHRAAHALRS 62

Query:    65 SKIVLRDLRFRYLAAKCLEELKEWEQCLSML 95
              K+       RYLAA+C    KE +Q L +L
Sbjct:    63 RKLDKLYEACRYLAARCHYAAKEHQQALDIL 93

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005876 "spindle microtubule" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

UNIPROTKB|I3L944 CDC16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 34/75 (45%), Positives = 47/75 (62%)

Query:    22 YSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAK 80
             Y SA+F+ADKVA+L+++ P D+Y  AQ L+L   Y RA H L + K+       RYLAA+
Sbjct:    19 YQSALFWADKVASLSHEEPQDIYWLAQCLYLTAQYHRAAHALRSRKLDKLYEACRYLAAR 78

Query:    81 CLEELKEWEQCLSML 95
             C    KE +Q L +L
Sbjct:    79 CHFAAKEHQQALDIL 93

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|G4N150 MGG_07440 "Anaphase-promoting complex subunit cut9" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 146 (56.5 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 34/87 (39%), Positives = 51/87 (58%)

Query:     9 LRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIV 68
             LR   +D ++K  Y SAIF  DK+ A+T D  D +  AQ  F    Y RA  LL+ S +V
Sbjct:     5 LRDWRQDALNKAQYESAIFVGDKLLAITGDDKDAFWLAQVHFASGSYTRAQALLSKSDLV 64

Query:    69 LRDLRFRYLAAKCLEELKEWEQCLSML 95
              R+   RYL+A CL +  ++++ L++L
Sbjct:    65 SRNPSCRYLSAHCLIKQGQYDEALNVL 91

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3DNN5	CDC16_ARATH	No assigned EC number	0.9473	1.0	0.1749	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.2__2169__AT1G78770.1	annotation not avaliable (543 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_304179.1	annotation not avaliable (192 aa)					•	•	•		0.916
	scaffold_500481.1	annotation not avaliable (209 aa)				•	•	•	•		0.866
	fgenesh2_kg.3__2801__AT2G04660.1	annotation not avaliable (866 aa)					•	•	•		0.813
	fgenesh2_kg.4__1988__AT2G39090.1	annotation not avaliable (558 aa)					•	•	•		0.737
	fgenesh2_kg.3__3171__AT2G20000.1	annotation not avaliable (744 aa)					•	•	•	•	0.695
	scaffold_100656.1	annotation not avaliable (916 aa)				•		•	•		0.689
	fgenesh2_kg.5__1167__AT3G48150.1	annotation not avaliable (579 aa)				•	•	•	•	•	0.684
	fgenesh2_kg.7__60__AT4G38630.1	At4g38630-like protein (386 aa)					•	•			0.641
	fgenesh2_kg.3__1785__AT3G16320.1	annotation not avaliable (717 aa)					•	•	•	•	0.572
	fgenesh2_kg.7__1789__AT4G24820.1	annotation not avaliable (387 aa)				•		•			0.553

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	95
pfam12895	80	pfam12895, Apc3, Anaphase-promoting complex, cyclo	1e-17

>gnl|CDD|221837 pfam12895, Apc3, Anaphase-promoting complex, cyclosome, subunit 3

 Score = 70.0 bits (172), Expect = 1e-17
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 19 KHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLA 78
          +  Y +AIF A+K+ ALT    D Y+ AQ  FL   Y+RA+ LL   K+       RYL 
Sbjct: 2  QGNYENAIFLAEKLLALTPSNEDAYLLAQCYFLQGQYKRAYELLRKLKLDNS-SGCRYLL 60

Query: 79 AKCLEELKEWEQCLSML 95
          A+CL +L ++++ +++L
Sbjct: 61 AQCLLKLGKYDEAIAVL 77

Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.84
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.74
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.6
PRK15359	144	type III secretion system chaperone protein SscB;	98.22
PF04049	142	APC8: Anaphase promoting complex subunit 8 / Cdc23	98.21
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.2
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.08
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.06
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.04
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.97
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.95
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.92
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.8
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.7
PRK10803	263	tol-pal system protein YbgF; Provisional	97.65
PF13371	73	TPR_9: Tetratricopeptide repeat	97.65
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.6
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.58
PRK12370	553	invasion protein regulator; Provisional	97.58
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.58
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.5
PRK15331	165	chaperone protein SicA; Provisional	97.49
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.46
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.44
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.41
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.38
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.36
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.34
PRK12370	553	invasion protein regulator; Provisional	97.32
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.29
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.28
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.27
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.25
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.24
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.22
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.22
PF13371	73	TPR_9: Tetratricopeptide repeat	97.2
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.19
KOG1126	638	consensus DNA-binding cell division cycle control	97.18
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.17
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.12
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.09
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.08
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.06
PRK15359	144	type III secretion system chaperone protein SscB;	97.06
PRK11189	296	lipoprotein NlpI; Provisional	97.04
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.01
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.93
PF12688	120	TPR_5: Tetratrico peptide repeat	96.84
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.75
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.74
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.73
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.69
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.68
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.68
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.66
PRK11189	296	lipoprotein NlpI; Provisional	96.63
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.59
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.55
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.55
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.43
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.42
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.42
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.38
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	96.36
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.28
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.16
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.09
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.97
COG4783	484	Putative Zn-dependent protease, contains TPR repea	95.87
PF13512	142	TPR_18: Tetratricopeptide repeat	95.82
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.64
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	95.57
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.5
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.44
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.42
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	95.36
PRK10370	198	formate-dependent nitrite reductase complex subuni	95.22
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.19
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	95.13
KOG2076	895	consensus RNA polymerase III transcription factor	95.13
PF13431	34	TPR_17: Tetratricopeptide repeat	95.07
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.0
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.97
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	94.9
KOG0553	304	consensus TPR repeat-containing protein [General f	94.85
KOG4340	459	consensus Uncharacterized conserved protein [Funct	94.8
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	94.74
KOG1126	638	consensus DNA-binding cell division cycle control	94.66
COG4783	484	Putative Zn-dependent protease, contains TPR repea	94.48
PRK14574	822	hmsH outer membrane protein; Provisional	94.47
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	94.45
PRK14574	822	hmsH outer membrane protein; Provisional	94.43
PRK14720	906	transcript cleavage factor/unknown domain fusion p	94.27
PF13428	44	TPR_14: Tetratricopeptide repeat	94.15
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.1
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	93.81
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.77
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	93.45
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	93.44
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.39
KOG3785	557	consensus Uncharacterized conserved protein [Funct	93.03
PRK11906	458	transcriptional regulator; Provisional	92.97
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	92.78
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	92.66
KOG2003	840	consensus TPR repeat-containing protein [General f	92.64
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	92.57
KOG1129	478	consensus TPR repeat-containing protein [General f	92.01
PF13512	142	TPR_18: Tetratricopeptide repeat	91.71
KOG0547	606	consensus Translocase of outer mitochondrial membr	90.87
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	90.81
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	90.66
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.65
PF12688	120	TPR_5: Tetratrico peptide repeat	90.57
PRK10803	263	tol-pal system protein YbgF; Provisional	90.52
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	90.22
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	90.15
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	90.06
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	90.06
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	89.91
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	89.87
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	89.84
PF13428	44	TPR_14: Tetratricopeptide repeat	89.78
PRK15331	165	chaperone protein SicA; Provisional	89.59
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	89.4
COG3118	304	Thioredoxin domain-containing protein [Posttransla	88.82
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.8
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.51
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	88.19
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.14
PLN03218	1060	maturation of RBCL 1; Provisional	88.1
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	88.04
PLN03077	857	Protein ECB2; Provisional	87.98
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	87.98
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	87.76
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	87.73
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	87.66
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	87.63
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	87.51
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	86.77
KOG2610	491	consensus Uncharacterized conserved protein [Funct	86.72
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	86.61
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	86.47
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	86.17
KOG3785	557	consensus Uncharacterized conserved protein [Funct	85.75
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	85.16
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.16
KOG0547	606	consensus Translocase of outer mitochondrial membr	84.9
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	84.32
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	84.21
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	84.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	84.02
PLN03218	1060	maturation of RBCL 1; Provisional	83.88
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	83.6
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	83.44
PF09477	116	Type_III_YscG: Bacterial type II secretion system	83.26
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	83.09
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	83.01
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	82.38
KOG0553	304	consensus TPR repeat-containing protein [General f	82.32
KOG1585	308	consensus Protein required for fusion of vesicles	82.04
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	81.46
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	81.43
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	81.21
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	80.86
PLN03077	857	Protein ECB2; Provisional	80.69
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	80.38
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	80.26

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=6.5e-21  Score=150.25  Aligned_cols=90  Identities=58%  Similarity=0.963  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHc
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l   85 (95)
                      +++.|++|++++++++|++|+|||||+..++++|.|+||+|||||..|+|+||.++++.+++...++.|+||+++|++++
T Consensus        16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l   95 (611)
T KOG1173|consen   16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL   95 (611)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            67788888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHhcC
Q 040780           86 KEWEQCLSML   95 (95)
Q Consensus        86 ~~~~eal~~L   95 (95)
                      ++|++|+.+|
T Consensus        96 k~~~~al~vl  105 (611)
T KOG1173|consen   96 KEWDQALLVL  105 (611)
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.74  E-value=4.2e-18  Score=104.14  Aligned_cols=78  Identities=29%  Similarity=0.517  Sum_probs=67.3

Q ss_pred             HhCChhhHHHHHHHHhhhcC-CchhHHHH--HHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           18 SKHLYSSAIFFADKVAALTN-DPADVYMQ--AQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        18 ~~~~y~~AiF~Aekl~a~~~-~~~~~~ll--A~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ++++|++|+++.||++..+| ++++.+++  |.|+|..|+|++|+.++++.+...+++.+.|+.|+|++++|+|+||+.+
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57999999999999999998 44665555  9999999999999999988556667889999999999999999999986


Q ss_pred             C
Q 040780           95 L   95 (95)
Q Consensus        95 L   95 (95)
                      |
T Consensus        81 l   81 (84)
T PF12895_consen   81 L   81 (84)
T ss_dssp             H
T ss_pred             H
Confidence            4

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.60  E-value=5.4e-07  Score=57.98  Aligned_cols=89  Identities=20%  Similarity=0.203  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~   83 (95)
                      ...+......++..++++.|+.+.+++...+| +++..+.+|.|++..|++..|...+++. ...+.++...|..|.|+.
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            44566778889999999999999999999886 7788889999999999999999877764 345667888999999999


Q ss_pred             HcccHHHHHhc
Q 040780           84 ELKEWEQCLSM   94 (95)
Q Consensus        84 ~l~~~~eal~~   94 (95)
                      ..|++++|+..
T Consensus        97 ~~g~~~~A~~~  107 (135)
T TIGR02552        97 ALGEPESALKA  107 (135)
T ss_pred             HcCCHHHHHHH
Confidence            99999999764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.22  E-value=1.6e-05  Score=52.98  Aligned_cols=86  Identities=12%  Similarity=0.032  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      ....-......+.|+.|+-..++++..+| +++..+.+|.++...|++..|+...++. .+.+.++...+-.|.|+..+|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            33455677889999999999999999997 7778889999999999999999988764 345678888899999999999


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      +++||+..
T Consensus       107 ~~~eAi~~  114 (144)
T PRK15359        107 EPGLAREA  114 (144)
T ss_pred             CHHHHHHH
Confidence            99999875

>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8)

Probab=98.21  E-value=1.4e-05  Score=53.99  Aligned_cols=78  Identities=27%  Similarity=0.410  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-------------------------------CchhHHHHHHHHhh
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-------------------------------DPADVYMQAQALFL   51 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-------------------------------~~~~~~llA~~l~~   51 (95)
                      .+.-..||..|.++-+.+.|.+|-..||-+..+.+                               ...+.|++|.+||-
T Consensus         7 ~~ir~~L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~yllAksyFD   86 (142)
T PF04049_consen    7 KEIRSELRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPSSSPSSSQLSPSSPSEDQLESKEYDKYLLAKSYFD   86 (142)
T ss_pred             HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCcccccccccccCCCccccCCCChhhhhhhhhHHHHHHHHHHHhc
Confidence            35667899999999999999999999999999981                               01389999999999


Q ss_pred             CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH
Q 040780           52 GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus        52 ~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~   84 (95)
                      .++|.||.+++++.    +++.+.||.-.+.+-
T Consensus        87 ~kEy~RaA~~L~~~----~s~~~~FL~lYs~YL  115 (142)
T PF04049_consen   87 CKEYDRAAHVLKDC----KSPKALFLRLYSRYL  115 (142)
T ss_pred             hhHHHHHHHHHccC----CCchHHHHHHHHHHH
Confidence            99999999999984    466666666666553

This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.20  E-value=1.2e-05  Score=61.03  Aligned_cols=87  Identities=11%  Similarity=0.058  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      .|...-......+.|+.|+-..++++.++| ++...+.+|.|+...|++..|+..+++. .+...+....+..|.+++.+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            466667788889999999999999999997 5667778899999999999999988764 34456778888999999999


Q ss_pred             ccHHHHHhc
Q 040780           86 KEWEQCLSM   94 (95)
Q Consensus        86 ~~~~eal~~   94 (95)
                      |+|++|+..
T Consensus        84 g~~~eA~~~   92 (356)
T PLN03088         84 EEYQTAKAA   92 (356)
T ss_pred             CCHHHHHHH
Confidence            999999875

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.08  E-value=2.6e-05  Score=44.84  Aligned_cols=50  Identities=22%  Similarity=0.242  Sum_probs=44.9

Q ss_pred             HHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc
Q 040780           17 VSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK   66 (95)
Q Consensus        17 l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~   66 (95)
                      +.+++|+.|+-.-++++..+| +++..+.+|.|++..|++..|..++++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            578999999999999999997 77788889999999999999999999853

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.06  E-value=4.6e-05  Score=43.17  Aligned_cols=85  Identities=15%  Similarity=0.158  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHccc
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKE   87 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~   87 (95)
                      ..........++++.|+-+.+++....+ ++...+.+|.++...|++..|...++.. ...+.+....+..|.++...++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence            3455566778999999999999999886 4567788999999999999999988763 2234455677888999999999


Q ss_pred             HHHHHhc
Q 040780           88 WEQCLSM   94 (95)
Q Consensus        88 ~~eal~~   94 (95)
                      +++|...
T Consensus        84 ~~~a~~~   90 (100)
T cd00189          84 YEEALEA   90 (100)
T ss_pred             HHHHHHH
Confidence            9998754

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.04  E-value=9e-05  Score=52.04  Aligned_cols=81  Identities=10%  Similarity=0.114  Sum_probs=69.4

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHH-hhCCC--HHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQAL-FLGRH--YRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l-~~~~~--~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      .-++..+.+++|+-.-++++.+.| +++-.+.+|.++ +..|+  +..|..++++. ..++.++...++.|...++.|+|
T Consensus        81 ~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~  160 (198)
T PRK10370         81 EYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADY  160 (198)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence            357899999999999999999997 677777889996 67788  58999988764 34567889999999999999999


Q ss_pred             HHHHhc
Q 040780           89 EQCLSM   94 (95)
Q Consensus        89 ~eal~~   94 (95)
                      ++|+..
T Consensus       161 ~~Ai~~  166 (198)
T PRK10370        161 AQAIEL  166 (198)
T ss_pred             HHHHHH
Confidence            999864

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.97  E-value=0.00014  Score=48.71  Aligned_cols=87  Identities=10%  Similarity=-0.082  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~   84 (95)
                      ...-.+...+..+++|+.|+-+.+++....| ++...+.+|.+++..|++..|...+++. ...+.+....+..|.++..
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  111 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ  111 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            3344455666667777777777777666664 3445555667777777777766665542 1123344455555666666


Q ss_pred             cccHHHHHh
Q 040780           85 LKEWEQCLS   93 (95)
Q Consensus        85 l~~~~eal~   93 (95)
                      .|++++|+.
T Consensus       112 ~g~~~~A~~  120 (234)
T TIGR02521       112 QGKYEQAMQ  120 (234)
T ss_pred             cccHHHHHH
Confidence            666666654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.95  E-value=0.00016  Score=44.72  Aligned_cols=87  Identities=15%  Similarity=0.059  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcCC----chhHHHHHHHHhhCCCHHHHHHHHhcCc-cccc---ChhhHHHHH
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTND----PADVYMQAQALFLGRHYRRAFHLLNASK-IVLR---DLRFRYLAA   79 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~----~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~---~~~c~yL~A   79 (95)
                      -+-......+.+++|+.|+=..+++....|+    ++..+.+|.+++..|+|..|...++..- ..+.   .+...+..|
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3456777888999999999999999988763    4578899999999999999999887531 1122   356789999


Q ss_pred             HHHHHcccHHHHHhc
Q 040780           80 KCLEELKEWEQCLSM   94 (95)
Q Consensus        80 ~c~~~l~~~~eal~~   94 (95)
                      .+..+++++++|+..
T Consensus        84 ~~~~~~~~~~~A~~~   98 (119)
T TIGR02795        84 MSLQELGDKEKAKAT   98 (119)
T ss_pred             HHHHHhCChHHHHHH
Confidence            999999999999864

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.92  E-value=0.00016  Score=49.92  Aligned_cols=92  Identities=9%  Similarity=0.078  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHH
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAK   80 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~   80 (95)
                      ++.++.+-.+-......+.+++|+=+-+-++..+| +++..|-||-|+-+.|+|..|+..-.... +.+.++..-+=.|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            67788899999999999999999999999999997 78888999999999999999999877653 55678889999999


Q ss_pred             HHHHcccHHHHHhc
Q 040780           81 CLEELKEWEQCLSM   94 (95)
Q Consensus        81 c~~~l~~~~eal~~   94 (95)
                      |++++|+.++|...
T Consensus       112 c~L~lG~~~~A~~a  125 (157)
T PRK15363        112 CYLACDNVCYAIKA  125 (157)
T ss_pred             HHHHcCCHHHHHHH
Confidence            99999999998764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.80  E-value=0.00025  Score=56.05  Aligned_cols=88  Identities=16%  Similarity=0.143  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHH
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~   84 (95)
                      +.+...-...+.+++|+.|+...++.....| +++..+.+|.+++..|+|..|...+++.. ....+....+..|+++..
T Consensus        23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (899)
T TIGR02917        23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLL  102 (899)
T ss_pred             HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHH
Confidence            3345556677888899999988888888886 67778888888888888888888776531 122344556677777777


Q ss_pred             cccHHHHHhc
Q 040780           85 LKEWEQCLSM   94 (95)
Q Consensus        85 l~~~~eal~~   94 (95)
                      .|++++|+..
T Consensus       103 ~g~~~~a~~~  112 (899)
T TIGR02917       103 QGKFQQVLDE  112 (899)
T ss_pred             CCCHHHHHHh
Confidence            7777777654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.70  E-value=0.00033  Score=57.82  Aligned_cols=79  Identities=10%  Similarity=-0.038  Sum_probs=65.1

Q ss_pred             HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      -...|.|++|.+|=++++.+.| +......+|+++.+.+++.+|...+++. ...+.++...++.|.|+-++|+|+||+.
T Consensus        96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~  175 (694)
T PRK15179         96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADA  175 (694)
T ss_pred             HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHH
Confidence            3457899999999999999997 5667888899999999999998888764 2235678888999999999999999886


Q ss_pred             c
Q 040780           94 M   94 (95)
Q Consensus        94 ~   94 (95)
                      +
T Consensus       176 ~  176 (694)
T PRK15179        176 C  176 (694)
T ss_pred             H
Confidence            4

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.65  E-value=0.00095  Score=49.12  Aligned_cols=86  Identities=9%  Similarity=0.021  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcCC----chhHHHHHHHHhhCCCHHHHHHHHhc----CcccccChhhHHHHHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTND----PADVYMQAQALFLGRHYRRAFHLLNA----SKIVLRDLRFRYLAAK   80 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~----~~~~~llA~~l~~~~~~~~A~~ll~~----~~l~~~~~~c~yL~A~   80 (95)
                      +...+...+..+.|+.|+-.-++++...|+    ++..||+|.++|..|+|..|....++    ++-..+.+...|-.|.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            444454456679999999999999999873    57999999999999999999876643    4444566778888899


Q ss_pred             HHHHcccHHHHHhc
Q 040780           81 CLEELKEWEQCLSM   94 (95)
Q Consensus        81 c~~~l~~~~eal~~   94 (95)
                      +..++|++++|+..
T Consensus       226 ~~~~~g~~~~A~~~  239 (263)
T PRK10803        226 IMQDKGDTAKAKAV  239 (263)
T ss_pred             HHHHcCCHHHHHHH
Confidence            99999999999875

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.65  E-value=0.00019  Score=41.69  Aligned_cols=51  Identities=22%  Similarity=0.272  Sum_probs=45.8

Q ss_pred             HHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780           15 DCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus        15 ~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      -++.+++|+.|+-+.|+++.++| ++.-.+.+|.|++..|+|..|...+++.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~   55 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERA   55 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            46789999999999999999997 6777778999999999999999988764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.60  E-value=0.0013  Score=44.49  Aligned_cols=82  Identities=11%  Similarity=-0.008  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc----hhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDP----ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAK   80 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~----~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~   80 (95)
                      ...+..+...+...+.++.|+.+.++++...+++    ...+.+|.+++..|+|..|...+++. ...+.+....+..|.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3345566667788999999999999999887542    46788899999999999999987753 233456667777899


Q ss_pred             HHHHccc
Q 040780           81 CLEELKE   87 (95)
Q Consensus        81 c~~~l~~   87 (95)
                      ++..+++
T Consensus       115 ~~~~~g~  121 (172)
T PRK02603        115 IYHKRGE  121 (172)
T ss_pred             HHHHcCC
Confidence            9988776

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.58  E-value=0.0011  Score=53.16  Aligned_cols=88  Identities=14%  Similarity=0.074  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~   84 (95)
                      ...++..-..+...+.|+.|+-.-++++.+.|++..-+-+|.|++..|+|..|+...++. .+.+.+..+.+-.|.++..
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            455677777889999999999999999999988777777899999999999999987764 2445677888899999999


Q ss_pred             cccHHHHHh
Q 040780           85 LKEWEQCLS   93 (95)
Q Consensus        85 l~~~~eal~   93 (95)
                      +|+|++|+.
T Consensus       207 lg~~~eA~~  215 (615)
T TIGR00990       207 LGKYADALL  215 (615)
T ss_pred             cCCHHHHHH
Confidence            999999974

>PRK12370 invasion protein regulator; Provisional

Probab=97.58  E-value=0.00038  Score=55.40  Aligned_cols=75  Identities=11%  Similarity=0.064  Sum_probs=36.8

Q ss_pred             HhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780           18 SKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL   92 (95)
Q Consensus        18 ~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal   92 (95)
                      ..++++.|+-..++++.++| +++..+.+|.+++..|++.+|+..+++. .+.+.++...+..+..++..++++||+
T Consensus       350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~  426 (553)
T PRK12370        350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAI  426 (553)
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHH
Confidence            44556666666666666554 3344455555666666666555555442 122223333333333444455555544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.58  E-value=0.00016  Score=41.27  Aligned_cols=51  Identities=18%  Similarity=0.271  Sum_probs=37.6

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      ...+..++|+.|+-.-++++...| +++..+++|.|++..|++..|...++.
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~   56 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYER   56 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            456677778888888888877776 667777778888888888888777665

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.50  E-value=0.00083  Score=46.96  Aligned_cols=89  Identities=13%  Similarity=0.134  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-Cc---hhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChh---hHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DP---ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLR---FRYL   77 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~---~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~---c~yL   77 (95)
                      .+.+-.....++..++|+.|+-.-+++....| ++   +..+.+|.+++..|++..|...+++. ...+.++.   ..|.
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            45666777889999999999999999999886 33   35588999999999999999988763 11223333   5788


Q ss_pred             HHHHHHHc--------ccHHHHHhc
Q 040780           78 AAKCLEEL--------KEWEQCLSM   94 (95)
Q Consensus        78 ~A~c~~~l--------~~~~eal~~   94 (95)
                      .|.|.++.        +++++|+..
T Consensus       113 ~g~~~~~~~~~~~~~~~~~~~A~~~  137 (235)
T TIGR03302       113 RGLSNYNQIDRVDRDQTAAREAFEA  137 (235)
T ss_pred             HHHHHHHhcccccCCHHHHHHHHHH
Confidence            89999876        778888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15331 chaperone protein SicA; Provisional

Probab=97.49  E-value=0.00096  Score=46.37  Aligned_cols=92  Identities=12%  Similarity=0.164  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHH
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAK   80 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~   80 (95)
                      ++.++.+-..-.+.-.++.|++|.=+---|+..++ +++-.+=||-|+-..|+|..|+..-.-.. +...+|.--|-.|+
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            67788888889999999999999988888888886 78888888999999999999987654332 23456667788999


Q ss_pred             HHHHcccHHHHHhc
Q 040780           81 CLEELKEWEQCLSM   94 (95)
Q Consensus        81 c~~~l~~~~eal~~   94 (95)
                      |.+.+++..+|...
T Consensus       114 C~l~l~~~~~A~~~  127 (165)
T PRK15331        114 CQLLMRKAAKARQC  127 (165)
T ss_pred             HHHHhCCHHHHHHH
Confidence            99999999998764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.46  E-value=0.0014  Score=52.53  Aligned_cols=14  Identities=7%  Similarity=0.259  Sum_probs=5.3

Q ss_pred             HHHHHHHcccHHHH
Q 040780           78 AAKCLEELKEWEQC   91 (95)
Q Consensus        78 ~A~c~~~l~~~~ea   91 (95)
                      .|.++.+.|++++|
T Consensus       473 lg~~~~~~g~~~~A  486 (615)
T TIGR00990       473 YGELLLDQNKFDEA  486 (615)
T ss_pred             HHHHHHHccCHHHH
Confidence            33333333333333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.44  E-value=0.0017  Score=51.36  Aligned_cols=86  Identities=21%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +..+.+-+...++ +.|+-+.+|++.+.| ++..+..+|.+++..|++..|...+++. ...+..+...+..|.++.+.|
T Consensus       807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  885 (899)
T TIGR02917       807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG  885 (899)
T ss_pred             HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence            3445566677778 789999999999986 6777889999999999999999988764 223446788888999999999


Q ss_pred             cHHHHHhcC
Q 040780           87 EWEQCLSML   95 (95)
Q Consensus        87 ~~~eal~~L   95 (95)
                      ++++|+..+
T Consensus       886 ~~~~A~~~~  894 (899)
T TIGR02917       886 RKAEARKEL  894 (899)
T ss_pred             CHHHHHHHH
Confidence            999998753

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.41  E-value=0.0033  Score=41.93  Aligned_cols=81  Identities=11%  Similarity=0.117  Sum_probs=48.8

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQ   90 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~e   90 (95)
                      ..-+...++++.|+-+.++++..+| +++..+.+|.+++..|++.+|...+++.. ....++....+.+++....|++++
T Consensus       142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (234)
T TIGR02521       142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA  221 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence            3344566677777777777766664 45556666777777777777766665431 112344455566666666666666


Q ss_pred             HHh
Q 040780           91 CLS   93 (95)
Q Consensus        91 al~   93 (95)
                      |..
T Consensus       222 a~~  224 (234)
T TIGR02521       222 AQR  224 (234)
T ss_pred             HHH
Confidence            654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.38  E-value=0.00063  Score=38.77  Aligned_cols=52  Identities=21%  Similarity=0.324  Sum_probs=43.0

Q ss_pred             HHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           43 YMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        43 ~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      |.+|..++..|+|..|...++.. ...+.++...+..|.|+...|++++|+..
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~   53 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAY   53 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            46899999999999999988763 12356788999999999999999999864

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.36  E-value=0.0028  Score=46.55  Aligned_cols=82  Identities=15%  Similarity=0.075  Sum_probs=65.8

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-cccc----ChhhHHHHHHHHHHcc
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLR----DLRFRYLAAKCLEELK   86 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~----~~~c~yL~A~c~~~l~   86 (95)
                      -.-...+++++.|+-.+++.+.+.| ++...+.+|.+++..|++..|...+++.- ....    ...+.+..|.++...|
T Consensus       121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G  200 (355)
T cd05804         121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG  200 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence            3456789999999999999999997 56677889999999999999999987642 1111    1234557899999999


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      ++++|+..
T Consensus       201 ~~~~A~~~  208 (355)
T cd05804         201 DYEAALAI  208 (355)
T ss_pred             CHHHHHHH
Confidence            99999875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.34  E-value=0.0042  Score=40.95  Aligned_cols=84  Identities=15%  Similarity=0.063  Sum_probs=52.4

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcCC----chhHHHHHHHHhhCCCHHHHHHHHhcCccccc----ChhhHHHHHHHHH
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTND----PADVYMQAQALFLGRHYRRAFHLLNASKIVLR----DLRFRYLAAKCLE   83 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~----~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~----~~~c~yL~A~c~~   83 (95)
                      -+...+..+.++.+.-..+++....|+    ....+.+|.+++..|++..|...++...-..+    .+..++-.|++++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~   96 (145)
T PF09976_consen   17 QALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL   96 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence            344444677777777777777776653    23566677777777777777776654311111    1235555677777


Q ss_pred             HcccHHHHHhcC
Q 040780           84 ELKEWEQCLSML   95 (95)
Q Consensus        84 ~l~~~~eal~~L   95 (95)
                      ..|+|++|+..|
T Consensus        97 ~~~~~d~Al~~L  108 (145)
T PF09976_consen   97 QQGQYDEALATL  108 (145)
T ss_pred             HcCCHHHHHHHH
Confidence            777777777653

>PRK12370 invasion protein regulator; Provisional

Probab=97.32  E-value=0.00086  Score=53.40  Aligned_cols=75  Identities=15%  Similarity=0.076  Sum_probs=64.1

Q ss_pred             CChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           20 HLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        20 ~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +.++.|+-.++|++.++| +++....+|.++...|++..|...+++. .+.+.++...+..|.++...|+++||+..
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~  394 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT  394 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            347899999999999997 6667778899999999999999988764 34456777888899999999999999865

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.29  E-value=0.00054  Score=39.36  Aligned_cols=56  Identities=16%  Similarity=0.143  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCC-CHHHHHHHHhc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGR-HYRRAFHLLNA   64 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~-~~~~A~~ll~~   64 (95)
                      +...=..+...++|+.|+-.-++.+..+| ++.-.+.+|.|++..| ++.+|+..+++
T Consensus         6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen    6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            34444555666777777777777777665 4555566677777776 56666665554

...

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.28  E-value=0.0007  Score=43.31  Aligned_cols=65  Identities=22%  Similarity=0.347  Sum_probs=53.2

Q ss_pred             HHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           30 DKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        30 ekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ++++..+| +.+..+.+|.+++..|++..|...++.. ...+.++...+..|.|+++.+++++|+..
T Consensus         7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~   73 (135)
T TIGR02552         7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDA   73 (135)
T ss_pred             HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666675 5678899999999999999999988763 22356778899999999999999999864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.27  E-value=0.0086  Score=40.20  Aligned_cols=88  Identities=13%  Similarity=-0.121  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc----hhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDP----ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAK   80 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~----~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~   80 (95)
                      ...+-.+...+..+++|+.|+-+.++.+.+.+++    ...+-+|.++...|++..|+..+++. .+.+.........|.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            4445566778889999999999999999887543    25677899999999999999988764 122233333333344


Q ss_pred             HH-------HHcccHHHHHh
Q 040780           81 CL-------EELKEWEQCLS   93 (95)
Q Consensus        81 c~-------~~l~~~~eal~   93 (95)
                      ..       .++|++++|+.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~  134 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEA  134 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHH
Confidence            44       48888886653

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.25  E-value=0.0097  Score=39.21  Aligned_cols=83  Identities=14%  Similarity=0.087  Sum_probs=67.5

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcCCch----hHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHccc
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTNDPA----DVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKE   87 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~~~----~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~   87 (95)
                      +.....+.+.|+.|+=.=+++....++++    ..+.+|.+++..|+|..|...++...-....+....+.|.++.+.|+
T Consensus        54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~  133 (145)
T PF09976_consen   54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGD  133 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCC
Confidence            34567789999999999999888765433    56778999999999999999998753333456678899999999999


Q ss_pred             HHHHHhc
Q 040780           88 WEQCLSM   94 (95)
Q Consensus        88 ~~eal~~   94 (95)
                      +++|+.+
T Consensus       134 ~~~A~~~  140 (145)
T PF09976_consen  134 YDEARAA  140 (145)
T ss_pred             HHHHHHH
Confidence            9999864

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.24  E-value=0.0011  Score=38.03  Aligned_cols=57  Identities=14%  Similarity=0.232  Sum_probs=47.4

Q ss_pred             CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc-cHHHHHhc
Q 040780           38 DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK-EWEQCLSM   94 (95)
Q Consensus        38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~-~~~eal~~   94 (95)
                      ++...+.+|.+++..|+|..|+..+++. .+.+.++...+-.|.|+.++| ++++|+..
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~   60 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIED   60 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHH
Confidence            3456778899999999999999988764 344667888999999999999 79999863

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.22  E-value=0.00042  Score=39.64  Aligned_cols=47  Identities=21%  Similarity=0.352  Sum_probs=38.3

Q ss_pred             HhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhcC
Q 040780           49 LFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSML   95 (95)
Q Consensus        49 l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~L   95 (95)
                      ++..|+|..|+.++++. ...+.+...++..|+|+++.|++++|...|
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l   48 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELL   48 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46789999999998864 234568889999999999999999998753

...

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.22  E-value=0.0057  Score=45.34  Aligned_cols=87  Identities=14%  Similarity=0.080  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC----CchhHHHHHHHHhhCCCHHHHHHHH----hcCcccccChhhHHHHHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN----DPADVYMQAQALFLGRHYRRAFHLL----NASKIVLRDLRFRYLAAK   80 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~----~~~~~~llA~~l~~~~~~~~A~~ll----~~~~l~~~~~~c~yL~A~   80 (95)
                      +-..-.+.+..+.|++|.=---.-+.--|    .++.-|||++|+|..|+|.+|....    ++++-..+.+...+=.|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            44444555666668887632222222223    5889999999999999999996644    455555678888999999


Q ss_pred             HHHHcccHHHHHhcC
Q 040780           81 CLEELKEWEQCLSML   95 (95)
Q Consensus        81 c~~~l~~~~eal~~L   95 (95)
                      |..++++-++|-..|
T Consensus       224 ~~~~l~~~d~A~atl  238 (262)
T COG1729         224 SLGRLGNTDEACATL  238 (262)
T ss_pred             HHHHhcCHHHHHHHH
Confidence            999999999987653

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.20  E-value=0.00062  Score=39.45  Aligned_cols=51  Identities=24%  Similarity=0.374  Sum_probs=43.0

Q ss_pred             HHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhcC
Q 040780           45 QAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSML   95 (95)
Q Consensus        45 lA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~L   95 (95)
                      |.+.++.+++|..|...++.. .+.+.++...+..|.|+.++|+|++|+..+
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l   52 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDL   52 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHH
Confidence            457899999999999998864 344678888999999999999999998753

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.19  E-value=0.0038  Score=50.85  Aligned_cols=77  Identities=16%  Similarity=0.077  Sum_probs=40.2

Q ss_pred             HHhCChhh----HHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780           17 VSKHLYSS----AIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ   90 (95)
Q Consensus        17 l~~~~y~~----AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e   90 (95)
                      ...+.++.    |+.+.++++.++| ++.....+|..+...|++..|...+++. .+.+.++...+..|.++.+.|++++
T Consensus       257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e  336 (656)
T PRK15174        257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA  336 (656)
T ss_pred             HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            44455553    5555566555554 3444455566666666666665555432 1223344445555555555555555


Q ss_pred             HHh
Q 040780           91 CLS   93 (95)
Q Consensus        91 al~   93 (95)
                      |+.
T Consensus       337 A~~  339 (656)
T PRK15174        337 ASD  339 (656)
T ss_pred             HHH
Confidence            554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.18  E-value=0.0008  Score=54.91  Aligned_cols=80  Identities=14%  Similarity=0.153  Sum_probs=64.6

Q ss_pred             HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      ++.+.+++.|.|.-.|++.++| +.-=+-.++..+.+.|+...|+.++++. -++.+++.|+|=-|+.++.+++|+||+.
T Consensus       499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~  578 (638)
T KOG1126|consen  499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ  578 (638)
T ss_pred             eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence            5678889999999999988887 3444555688888999999999888875 3567888899999999999999999886


Q ss_pred             cC
Q 040780           94 ML   95 (95)
Q Consensus        94 ~L   95 (95)
                      .|
T Consensus       579 ~L  580 (638)
T KOG1126|consen  579 EL  580 (638)
T ss_pred             HH
Confidence            54

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.17  E-value=0.0025  Score=51.91  Aligned_cols=86  Identities=8%  Similarity=0.031  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      -++..+...+.++.++.|+=..+.+++..| +++..+.++.+....|++..|...+++- .+.+.++...+..|..+.+.
T Consensus        44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~  123 (656)
T PRK15174         44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS  123 (656)
T ss_pred             CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            345555555555555555555555555553 4445555555555555555555544432 11223344444445555555


Q ss_pred             ccHHHHHh
Q 040780           86 KEWEQCLS   93 (95)
Q Consensus        86 ~~~~eal~   93 (95)
                      |++++|+.
T Consensus       124 g~~~~Ai~  131 (656)
T PRK15174        124 KQYATVAD  131 (656)
T ss_pred             CCHHHHHH
Confidence            55555443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.12  E-value=0.0062  Score=45.17  Aligned_cols=79  Identities=11%  Similarity=0.038  Sum_probs=43.4

Q ss_pred             HHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcc-cccC-hhhHHHHHHHHHHcccHHHH
Q 040780           15 DCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKI-VLRD-LRFRYLAAKCLEELKEWEQC   91 (95)
Q Consensus        15 ~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l-~~~~-~~c~yL~A~c~~~l~~~~ea   91 (95)
                      .+..+++++.|+-+.+++...+| +....+.+|.++...|++.+|+..+++..- .+.+ .......+.++.+.|++++|
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A  268 (389)
T PRK11788        189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG  268 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence            34556666666666666666654 344556666666667777666666654310 0011 11223445555666666666


Q ss_pred             Hh
Q 040780           92 LS   93 (95)
Q Consensus        92 l~   93 (95)
                      +.
T Consensus       269 ~~  270 (389)
T PRK11788        269 LE  270 (389)
T ss_pred             HH
Confidence            54

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.09  E-value=0.0015  Score=39.23  Aligned_cols=55  Identities=24%  Similarity=0.303  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +-.+..-+...++|+.|+-+.++ ...++ +++..+++|.|++..|+|..|+..+++
T Consensus        28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   28 LYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            44467788999999999999999 55554 568889999999999999999998875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.08  E-value=0.0084  Score=44.47  Aligned_cols=86  Identities=15%  Similarity=0.111  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcCCchh------HHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTNDPAD------VYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC   81 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~------~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c   81 (95)
                      +..++.-+...++|+.|+-..+++....+.+..      ...+|.+++..|++..|...+++. ...+.+....+..|..
T Consensus       144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  223 (389)
T PRK11788        144 LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDL  223 (389)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHH
Confidence            444555666777888888888877766643221      124677777888888887777653 1223455677778888


Q ss_pred             HHHcccHHHHHhc
Q 040780           82 LEELKEWEQCLSM   94 (95)
Q Consensus        82 ~~~l~~~~eal~~   94 (95)
                      +.+.|++++|+..
T Consensus       224 ~~~~g~~~~A~~~  236 (389)
T PRK11788        224 ALAQGDYAAAIEA  236 (389)
T ss_pred             HHHCCCHHHHHHH
Confidence            8888888888764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.0035  Score=51.09  Aligned_cols=59  Identities=20%  Similarity=0.242  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      +.+=+-|..+..++-|+.|+=-++|++...| ++++++..--|+...++|..|+.+++.+
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~   72 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKN   72 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc
Confidence            3444555556666666666666666666654 3344444455555555555555555444

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.06  E-value=0.0075  Score=40.06  Aligned_cols=76  Identities=16%  Similarity=0.169  Sum_probs=60.0

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      .+-.-+...++|+.|+.+-++++.++| +++..+-+|.|+...|++..|+..++.. .+.+.++.-..+.+..+..++
T Consensus        63 ~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         63 ALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            344446789999999999999999996 7889999999999999999999988764 233455666666666665544

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.04  E-value=0.0048  Score=45.46  Aligned_cols=76  Identities=12%  Similarity=-0.075  Sum_probs=42.7

Q ss_pred             HhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           18 SKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        18 ~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      ..+.++.|+-.-++++.++| +++..+.+|..+...|++..|....++. .+.+.+....+-.|.+++..|++++|+.
T Consensus        76 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~  153 (296)
T PRK11189         76 SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD  153 (296)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            44566666666666666664 4455555666666666666666555442 1223344444555666666666666654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.01  E-value=0.0061  Score=50.46  Aligned_cols=82  Identities=6%  Similarity=-0.158  Sum_probs=68.3

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQ   90 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~e   90 (95)
                      ..-......++.|+.++++++..+| +++..+.+|.++-..|+|.+|..+.++-- ..........=.|.++-+.|+.++
T Consensus       127 a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~  206 (694)
T PRK15179        127 LRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWR  206 (694)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence            3344568999999999999999997 78899999999999999999999887642 123456677778999999999999


Q ss_pred             HHhc
Q 040780           91 CLSM   94 (95)
Q Consensus        91 al~~   94 (95)
                      |..+
T Consensus       207 A~~~  210 (694)
T PRK15179        207 ARDV  210 (694)
T ss_pred             HHHH
Confidence            9865

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.93  E-value=0.0082  Score=51.65  Aligned_cols=85  Identities=15%  Similarity=0.003  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHccc
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKE   87 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~   87 (95)
                      ..........++++.|+-+-++++.++| ++...+.+|.+++..|++..|...+++. ...+.++...|..|..+.+.++
T Consensus       465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~  544 (1157)
T PRK11447        465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR  544 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCC
Confidence            3445567789999999999999999997 6777889999999999999999988763 1234567777888888888999


Q ss_pred             HHHHHhc
Q 040780           88 WEQCLSM   94 (95)
Q Consensus        88 ~~eal~~   94 (95)
                      +++|+..
T Consensus       545 ~~~Al~~  551 (1157)
T PRK11447        545 DRAALAH  551 (1157)
T ss_pred             HHHHHHH
Confidence            9999764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.84  E-value=0.01  Score=39.03  Aligned_cols=80  Identities=20%  Similarity=0.074  Sum_probs=63.3

Q ss_pred             HHHhCChhhHHHHHHHHhhhcCC----chhHHHHHHHHhhCCCHHHHHHHHhcCcc-ccc---ChhhHHHHHHHHHHccc
Q 040780           16 CVSKHLYSSAIFFADKVAALTND----PADVYMQAQALFLGRHYRRAFHLLNASKI-VLR---DLRFRYLAAKCLEELKE   87 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~~~----~~~~~llA~~l~~~~~~~~A~~ll~~~~l-~~~---~~~c~yL~A~c~~~l~~   87 (95)
                      +=..|..+.|+-+-++..+...+    ...+.-+|.++...|++.+|..++++.-. .+.   +...+++.|-++..+|+
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr   90 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR   90 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence            34568899999999999886522    34677899999999999999999986421 122   55678889999999999


Q ss_pred             HHHHHhcC
Q 040780           88 WEQCLSML   95 (95)
Q Consensus        88 ~~eal~~L   95 (95)
                      ++||+..+
T Consensus        91 ~~eAl~~~   98 (120)
T PF12688_consen   91 PKEALEWL   98 (120)
T ss_pred             HHHHHHHH
Confidence            99998753

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.75  E-value=0.014  Score=50.05  Aligned_cols=81  Identities=12%  Similarity=0.004  Sum_probs=56.8

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHH
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQC   91 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~ea   91 (95)
                      .-+...+.++.|+-+.++++.++| ++.....+|.++...|++..|+..+++. .+.+.++...+-.|.++..+|++++|
T Consensus       617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA  696 (987)
T PRK09782        617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT  696 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            345566777777777777777775 5566666777777777777777766653 23345667777778888888888877


Q ss_pred             Hhc
Q 040780           92 LSM   94 (95)
Q Consensus        92 l~~   94 (95)
                      +..
T Consensus       697 ~~~  699 (987)
T PRK09782        697 QHY  699 (987)
T ss_pred             HHH
Confidence            754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.74  E-value=0.0044  Score=44.65  Aligned_cols=80  Identities=19%  Similarity=0.018  Sum_probs=33.4

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcc-cccChhhHHHHHHHHHHcccHHHH
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKI-VLRDLRFRYLAAKCLEELKEWEQC   91 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l-~~~~~~c~yL~A~c~~~l~~~~ea   91 (95)
                      .-+...|+++.|+-.-++++..+| +++-...++..+...|++.++..+++...- ..+++....-+|.++..+|++++|
T Consensus       154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A  233 (280)
T PF13429_consen  154 EIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA  233 (280)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence            334445555555555555555554 233333344444444555444443332210 022333333344555555555544


Q ss_pred             Hh
Q 040780           92 LS   93 (95)
Q Consensus        92 l~   93 (95)
                      +.
T Consensus       234 l~  235 (280)
T PF13429_consen  234 LE  235 (280)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.73  E-value=0.014  Score=44.36  Aligned_cols=80  Identities=19%  Similarity=0.176  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +..+-.-++..+.|+.|+-.+++++.++| ++...+.+|.+++..|+|..|+..+++. .+...+.......++|-.+++
T Consensus        39 ~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         39 YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            33445567888999999999999999997 6778888999999999999999988764 345667888888899977775


Q ss_pred             cH
Q 040780           87 EW   88 (95)
Q Consensus        87 ~~   88 (95)
                      +.
T Consensus       119 ~~  120 (356)
T PLN03088        119 EE  120 (356)
T ss_pred             hh
Confidence            43

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.69  E-value=0.0081  Score=49.03  Aligned_cols=86  Identities=19%  Similarity=0.203  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcc
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +-+|.-|---|....|++|+-+-++-.+..-..---|-.|-|.|+.|+...|...++.  +.........|.|+.||+++
T Consensus        47 ~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~--~~~~~~~ll~L~AQvlYrl~  124 (652)
T KOG2376|consen   47 DAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKG--LDRLDDKLLELRAQVLYRLE  124 (652)
T ss_pred             hhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhc--ccccchHHHHHHHHHHHHHh
Confidence            4467777777889999999977777655432111116889999999999999999994  44556678899999999999


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      +|+||+++
T Consensus       125 ~ydealdi  132 (652)
T KOG2376|consen  125 RYDEALDI  132 (652)
T ss_pred             hHHHHHHH
Confidence            99999875

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.68  E-value=0.022  Score=47.16  Aligned_cols=85  Identities=16%  Similarity=0.041  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHccc
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKE   87 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~   87 (95)
                      .....-....+.++.|+-..+++....| +++-.+.+|.++...|++.+|...+++. .+.+.++...+..|....++++
T Consensus       363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~  442 (765)
T PRK10049        363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE  442 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence            3445566788999999999999999997 6778888899999999999999999874 2345678889999999999999


Q ss_pred             HHHHHhc
Q 040780           88 WEQCLSM   94 (95)
Q Consensus        88 ~~eal~~   94 (95)
                      |++|+.+
T Consensus       443 ~~~A~~~  449 (765)
T PRK10049        443 WRQMDVL  449 (765)
T ss_pred             HHHHHHH
Confidence            9999875

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.68  E-value=0.013  Score=38.32  Aligned_cols=62  Identities=16%  Similarity=0.173  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +..++-++.++..++..+.++.|+-++++++..+| ++.....+-.+|...|++..|....++
T Consensus        59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~  121 (146)
T PF03704_consen   59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER  121 (146)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            34466778888889999999999999999999999 555666679999999999999888765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.66  E-value=0.0062  Score=43.90  Aligned_cols=88  Identities=16%  Similarity=0.120  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhc-CCchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHH
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALT-NDPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~-~~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~   84 (95)
                      +-+..+++-.++.+.++.|.-.-+++.... ++|.-...+|.+++..|++..|...+++.- ..+.++.....+|.++..
T Consensus       181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~  260 (280)
T PF13429_consen  181 DARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ  260 (280)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence            346678888899999999888888887776 466666778999999999999999887642 235678888888999999


Q ss_pred             cccHHHHHhc
Q 040780           85 LKEWEQCLSM   94 (95)
Q Consensus        85 l~~~~eal~~   94 (95)
                      .|++++|..+
T Consensus       261 ~g~~~~A~~~  270 (280)
T PF13429_consen  261 AGRKDEALRL  270 (280)
T ss_dssp             ----------
T ss_pred             cccccccccc
Confidence            9999998865

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.63  E-value=0.023  Score=41.79  Aligned_cols=83  Identities=19%  Similarity=-0.016  Sum_probs=60.5

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccH
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      .+-.-+...++|+.|+-..++++.++| ++...+.+|.+++..|++..|+..+++.- +.+.++ .+.+........+++
T Consensus       103 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-~~~~~~~l~~~~~~~  181 (296)
T PRK11189        103 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-YRALWLYLAESKLDP  181 (296)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHccCCH
Confidence            344566788999999999999999997 45566788999999999999999887641 122232 234444444556778


Q ss_pred             HHHHhc
Q 040780           89 EQCLSM   94 (95)
Q Consensus        89 ~eal~~   94 (95)
                      ++|+..
T Consensus       182 ~~A~~~  187 (296)
T PRK11189        182 KQAKEN  187 (296)
T ss_pred             HHHHHH
Confidence            888764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.59  E-value=0.006  Score=37.47  Aligned_cols=56  Identities=11%  Similarity=0.093  Sum_probs=45.1

Q ss_pred             chhHHHHHHHHhhCCCHHHHHHHHhcCc-cccc---ChhhHHHHHHHHHHcccHHHHHhc
Q 040780           39 PADVYMQAQALFLGRHYRRAFHLLNASK-IVLR---DLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        39 ~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~---~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ++.+|-+|..++..|++..|...+...- ..+.   .....+..|.++.+.+++++|+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~   61 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKA   61 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHH
Confidence            5788999999999999999999886531 1111   245789999999999999999875

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.55  E-value=0.028  Score=48.27  Aligned_cols=76  Identities=11%  Similarity=-0.011  Sum_probs=63.5

Q ss_pred             hCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           19 KHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .++++.|+-+.++++.++|+++..+-+|.++...|++..|...+++. .+.+.++...+-.|.++.+.|+++||+..
T Consensus       589 ~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~  665 (987)
T PRK09782        589 PGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM  665 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            38999999999999999888777788899999999999998888764 34466777888888999999999998764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.55  E-value=0.022  Score=47.13  Aligned_cols=84  Identities=10%  Similarity=-0.054  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +..+..-+...++++.|+-.-+++++.+| +++..+.+|.++...|++.+|...+++. ...+.+.. .+..|..+...+
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g  130 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG  130 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence            33444455556666666666666666654 3444555566666666666666555542 12233444 555566666666


Q ss_pred             cHHHHHh
Q 040780           87 EWEQCLS   93 (95)
Q Consensus        87 ~~~eal~   93 (95)
                      ++++|+.
T Consensus       131 ~~~~Al~  137 (765)
T PRK10049        131 RHWDELR  137 (765)
T ss_pred             CHHHHHH
Confidence            6666554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.43  E-value=0.027  Score=43.89  Aligned_cols=49  Identities=20%  Similarity=0.395  Sum_probs=25.3

Q ss_pred             HHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           46 AQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        46 A~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      |..+...|+|.-|..+.++. .+.+..-.+-|..|+|+.++|+|++|+.+
T Consensus       241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla  290 (395)
T PF09295_consen  241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA  290 (395)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            44444444444444444432 11222334566667777777777777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.42  E-value=0.0059  Score=35.80  Aligned_cols=54  Identities=13%  Similarity=0.064  Sum_probs=37.1

Q ss_pred             hHHHHHHHHhhCCCHHHHHHHHhcC-------ccc-ccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           41 DVYMQAQALFLGRHYRRAFHLLNAS-------KIV-LRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        41 ~~~llA~~l~~~~~~~~A~~ll~~~-------~l~-~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ....+|.+++..|+|.+|+...++.       +-. .....+.+-.|.|+..+|++++|+..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~   68 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEY   68 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4566788888888888887777643       111 11255777788888888888888764

...

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.42  E-value=0.024  Score=45.59  Aligned_cols=81  Identities=20%  Similarity=0.200  Sum_probs=63.0

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHH---HHHccc
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKC---LEELKE   87 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c---~~~l~~   87 (95)
                      +.+++-..++|+.|+.+.|+.+..+|. ++--++.|.++-+.|++..|...++...  .-.+.=|||-.+|   +++.|+
T Consensus       200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar--~LD~~DRyiNsK~aKy~LRa~~  277 (517)
T PF12569_consen  200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR--ELDLADRYINSKCAKYLLRAGR  277 (517)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hCChhhHHHHHHHHHHHHHCCC
Confidence            345566778999999999999999984 6666677999999999999999998753  2334456665555   568999


Q ss_pred             HHHHHhc
Q 040780           88 WEQCLSM   94 (95)
Q Consensus        88 ~~eal~~   94 (95)
                      .++|+..
T Consensus       278 ~e~A~~~  284 (517)
T PF12569_consen  278 IEEAEKT  284 (517)
T ss_pred             HHHHHHH
Confidence            9999864

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.38  E-value=0.045  Score=39.61  Aligned_cols=80  Identities=8%  Similarity=-0.069  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCch----hHHHHHHHHhhCCCHHHHHHHHhc----CcccccChhhHHHH
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPA----DVYMQAQALFLGRHYRRAFHLLNA----SKIVLRDLRFRYLA   78 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~----~~~llA~~l~~~~~~~~A~~ll~~----~~l~~~~~~c~yL~   78 (95)
                      +.+-......+..++|+.|+-.=+++....|.++    ..+++|.++|..|+|..|....++    ++-++..+...|+.
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~  112 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR  112 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence            3344556677889999999999999999987433    459999999999999999876654    44344556788999


Q ss_pred             HHHHHHcc
Q 040780           79 AKCLEELK   86 (95)
Q Consensus        79 A~c~~~l~   86 (95)
                      |.|...++
T Consensus       113 g~~~~~~~  120 (243)
T PRK10866        113 GLTNMALD  120 (243)
T ss_pred             HHhhhhcc
Confidence            99976654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=96.36  E-value=0.05  Score=41.65  Aligned_cols=83  Identities=14%  Similarity=0.152  Sum_probs=66.0

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcCCch-hHH-HHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTNDPA-DVY-MQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWE   89 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~~~~-~~~-llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~   89 (95)
                      ..-+...++++.|.-+-+++...+|++. .+. +.+..+...|++..|...+++- ...++|+....+.+..+.+.|+|+
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~  204 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS  204 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence            3445889999999999999988777553 332 4488999999999999988763 344678889999999999999999


Q ss_pred             HHHhcC
Q 040780           90 QCLSML   95 (95)
Q Consensus        90 eal~~L   95 (95)
                      +++.+|
T Consensus       205 ~a~~~l  210 (398)
T PRK10747        205 SLLDIL  210 (398)
T ss_pred             HHHHHH
Confidence            998653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.28  E-value=0.049  Score=47.00  Aligned_cols=83  Identities=10%  Similarity=-0.069  Sum_probs=60.3

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHH
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWE   89 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~   89 (95)
                      +-.-+...++++.|+-.-++++..+| +++..+-+|.++...|++..|...+++.. ..+.++......|.+..+.|+++
T Consensus       609 La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~  688 (1157)
T PRK11447        609 LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA  688 (1157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH
Confidence            34456677888888888888888886 66777778888888888888888777531 12234555566778888888888


Q ss_pred             HHHhc
Q 040780           90 QCLSM   94 (95)
Q Consensus        90 eal~~   94 (95)
                      +|+..
T Consensus       689 eA~~~  693 (1157)
T PRK11447        689 AAQRT  693 (1157)
T ss_pred             HHHHH
Confidence            88754

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.16  E-value=0.058  Score=37.66  Aligned_cols=81  Identities=16%  Similarity=0.104  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC----CchhHHHHHHHHhhCCCHHHHHHHHhc----CcccccChhhHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN----DPADVYMQAQALFLGRHYRRAFHLLNA----SKIVLRDLRFRY   76 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~----~~~~~~llA~~l~~~~~~~~A~~ll~~----~~l~~~~~~c~y   76 (95)
                      ..+.+-..-...+..++|+.|+-.=+++....|    .++..+++|.++|..|+|..|...+++    ++-....+...|
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            344566677889999999999999999998876    366999999999999999999887654    333334456889


Q ss_pred             HHHHHHHHc
Q 040780           77 LAAKCLEEL   85 (95)
Q Consensus        77 L~A~c~~~l   85 (95)
                      +.|.|.++.
T Consensus        84 ~~g~~~~~~   92 (203)
T PF13525_consen   84 MLGLSYYKQ   92 (203)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.09  E-value=0.017  Score=32.16  Aligned_cols=54  Identities=13%  Similarity=0.156  Sum_probs=43.3

Q ss_pred             hHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           41 DVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        41 ~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ..+.+|.+++..|++..|...++.. ...+.+....+..|.++...+++++|+..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   56 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALED   56 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999988763 22344556778899999999999999864

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.97  E-value=0.043  Score=42.03  Aligned_cols=83  Identities=14%  Similarity=0.210  Sum_probs=66.6

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc---Ccc---------------------
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA---SKI---------------------   67 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~---~~l---------------------   67 (95)
                      .+-++.+++++.|+=..+++....| +++-..+++.++...|++.+|..++..   .+.                     
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~  239 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA  239 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999997 788889999999999999999855532   110                     


Q ss_pred             -------------------cccChhhHHHHHHHHHHcccHHHHHhcC
Q 040780           68 -------------------VLRDLRFRYLAAKCLEELKEWEQCLSML   95 (95)
Q Consensus        68 -------------------~~~~~~c~yL~A~c~~~l~~~~eal~~L   95 (95)
                                         ..+++.....+|+.+...|+.++|..+|
T Consensus       240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L  286 (398)
T PRK10747        240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII  286 (398)
T ss_pred             HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                               1124556677899999999999988753

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=95.87  E-value=0.094  Score=41.93  Aligned_cols=82  Identities=24%  Similarity=0.102  Sum_probs=67.4

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHH
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWE   89 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~   89 (95)
                      .++-.+..+.++.|+-..+|+++++|+ +-=...+|+.|+..|++.+|+.+|+... -++..+..-.+.|+.+-++|+-.
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~  425 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA  425 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence            445578899999999999999999984 6667788999999999999999998753 23456778888999999988877


Q ss_pred             HHHh
Q 040780           90 QCLS   93 (95)
Q Consensus        90 eal~   93 (95)
                      ++..
T Consensus       426 ~a~~  429 (484)
T COG4783         426 EALL  429 (484)
T ss_pred             HHHH
Confidence            7654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.82  E-value=0.098  Score=35.54  Aligned_cols=82  Identities=15%  Similarity=0.096  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC----CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccCh---hhHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN----DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDL---RFRYL   77 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~----~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~---~c~yL   77 (95)
                      .+.|-+--.+.++.++|+.|+-.=|.+-+-.|    .+..-..++.++|.+|+|..|+..+++. +++++|+   -..|+
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            44566677889999999999999999887775    4668899999999999999999887763 3444554   45778


Q ss_pred             HHHHHHHccc
Q 040780           78 AAKCLEELKE   87 (95)
Q Consensus        78 ~A~c~~~l~~   87 (95)
                      .|.+.++...
T Consensus        90 ~gL~~~~~~~   99 (142)
T PF13512_consen   90 RGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHhh
Confidence            8888887654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.64  E-value=0.095  Score=36.48  Aligned_cols=83  Identities=14%  Similarity=0.143  Sum_probs=59.7

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcCC-ch---hHHHHHHHHhhC--------CCHHHHHHHHhcCc-ccccChhh----
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTND-PA---DVYMQAQALFLG--------RHYRRAFHLLNASK-IVLRDLRF----   74 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~---~~~llA~~l~~~--------~~~~~A~~ll~~~~-l~~~~~~c----   74 (95)
                      +-.-+...++++.|+-..++++..+|+ ++   ..|.+|.|++..        |++..|...+++.- ..+.+...    
T Consensus        76 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  155 (235)
T TIGR03302        76 LAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK  155 (235)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence            344567789999999999999999973 43   578999999986        88999988887531 01122111    


Q ss_pred             -------------HHHHHHHHHHcccHHHHHhc
Q 040780           75 -------------RYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        75 -------------~yL~A~c~~~l~~~~eal~~   94 (95)
                                   .+-.|..+++.|++++|+..
T Consensus       156 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  188 (235)
T TIGR03302       156 KRMDYLRNRLAGKELYVARFYLKRGAYVAAINR  188 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence                         12346778888999998864

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=95.57  E-value=0.14  Score=40.03  Aligned_cols=78  Identities=23%  Similarity=0.217  Sum_probs=62.4

Q ss_pred             HHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           15 DCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        15 ~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      -.-..+.|+.|+-+-|++...+  |+...++|.++...++-..|+.++++.= ..+.+.....+.|+.+++.++++.|+.
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~~--pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~  255 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRERD--PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE  255 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhcC--CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            3344678999999999987665  6788899999999999999999998741 112345566778999999999999987


Q ss_pred             c
Q 040780           94 M   94 (95)
Q Consensus        94 ~   94 (95)
                      +
T Consensus       256 i  256 (395)
T PF09295_consen  256 I  256 (395)
T ss_pred             H
Confidence            5

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.50  E-value=0.42  Score=32.94  Aligned_cols=85  Identities=15%  Similarity=0.057  Sum_probs=69.7

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhcCcccc-cChhhHHHHHH
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNASKIVL-RDLRFRYLAAK   80 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~-~~~~c~yL~A~   80 (95)
                      ++.+.-|.+.++..+.....+++.-+=|-+..+-|+ ++--..-+--+...|+|..|++++++-.-.. ..+.|+=|.|.
T Consensus         7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~   86 (153)
T TIGR02561         7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL   86 (153)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence            567788889999999999999999999999999974 4433334666899999999999998753333 34889999999


Q ss_pred             HHHHccc
Q 040780           81 CLEELKE   87 (95)
Q Consensus        81 c~~~l~~   87 (95)
                      |++.+++
T Consensus        87 CL~al~D   93 (153)
T TIGR02561        87 CLNAKGD   93 (153)
T ss_pred             HHHhcCC
Confidence            9999987

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.44  E-value=0.13  Score=39.90  Aligned_cols=91  Identities=22%  Similarity=0.267  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHhCChhhHHHHHHHHhh-hcCCch-hHHHH---HHHHhhCCCHHHHHHHHhc-CcccccChhhHHH
Q 040780            4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAA-LTNDPA-DVYMQ---AQALFLGRHYRRAFHLLNA-SKIVLRDLRFRYL   77 (95)
Q Consensus         4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a-~~~~~~-~~~ll---A~~l~~~~~~~~A~~ll~~-~~l~~~~~~c~yL   77 (95)
                      |..+-.++-=..+...-.|+.|+..--+-++ -+++++ +.-+|   |-|.+..|+|.+|+.=.+. ..+.++|..|.|=
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            3334444444455666678888755555444 445444 44444   6699999999999885544 3456899999999


Q ss_pred             HHHHHHHcccHHHHHhc
Q 040780           78 AAKCLEELKEWEQCLSM   94 (95)
Q Consensus        78 ~A~c~~~l~~~~eal~~   94 (95)
                      -|+|+++|+++.+|+++
T Consensus       159 ~Akc~~eLe~~~~a~nw  175 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNW  175 (390)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            99999999999988764

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=95.42  E-value=0.059  Score=43.33  Aligned_cols=54  Identities=13%  Similarity=0.186  Sum_probs=46.6

Q ss_pred             hHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           41 DVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        41 ~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ..|.+|+.+-..|++..|+..|++. ...++.+...++.|+.+-..|++++|...
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~  250 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA  250 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3477899999999999999999864 34567789999999999999999999764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR00540 hemY_coli hemY protein

Probab=95.36  E-value=0.12  Score=39.50  Aligned_cols=79  Identities=14%  Similarity=0.122  Sum_probs=48.6

Q ss_pred             HHHhCChhhHHHHHHHHhhhcCCch-hHHH-HHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780           16 CVSKHLYSSAIFFADKVAALTNDPA-DVYM-QAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL   92 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~~~~~-~~~l-lA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal   92 (95)
                      +..+++++.|.-+=++.....|++. .+-+ .|..+...|++..|...++.- ...+.++....+.+..+.+.|+|++++
T Consensus       128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~  207 (409)
T TIGR00540       128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD  207 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence            4455666666666666655555443 3333 477777777777776655442 122456667777777777777777766


Q ss_pred             hc
Q 040780           93 SM   94 (95)
Q Consensus        93 ~~   94 (95)
                      ..
T Consensus       208 ~~  209 (409)
T TIGR00540       208 DI  209 (409)
T ss_pred             HH
Confidence            53

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=95.22  E-value=0.11  Score=36.27  Aligned_cols=76  Identities=8%  Similarity=0.023  Sum_probs=61.6

Q ss_pred             hCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH-HHccc--HHHHHh
Q 040780           19 KHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL-EELKE--WEQCLS   93 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~-~~l~~--~~eal~   93 (95)
                      ....+.++-.-++.+..+| +++.-+.+|.++...|++..|...+++. .+.+.++...+-.|.++ ...|+  +++|+.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            4566888888888888886 7888889999999999999999988764 34567788888889987 56777  478776


Q ss_pred             c
Q 040780           94 M   94 (95)
Q Consensus        94 ~   94 (95)
                      +
T Consensus       132 ~  132 (198)
T PRK10370        132 M  132 (198)
T ss_pred             H
Confidence            5

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.19  E-value=0.074  Score=37.13  Aligned_cols=57  Identities=12%  Similarity=0.172  Sum_probs=44.5

Q ss_pred             CchhHHHHHHHHhhCCCHHHHHHHHhcC----cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           38 DPADVYMQAQALFLGRHYRRAFHLLNAS----KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~----~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +++.+|..|...+..|+|..|+..++.-    +-....+...+..|.++++.|+|++|+..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~   64 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAA   64 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5678999999999999999999988752    22233456789999999999999999864

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=95.13  E-value=0.16  Score=39.35  Aligned_cols=76  Identities=16%  Similarity=0.179  Sum_probs=32.7

Q ss_pred             HhCChhhHHHHHHHHhhhcCCchhH------HHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780           18 SKHLYSSAIFFADKVAALTNDPADV------YMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ   90 (95)
Q Consensus        18 ~~~~y~~AiF~Aekl~a~~~~~~~~------~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e   90 (95)
                      ..-.|..||-.|+|+..+.+.+..+      .-||+.+....+..+|..++++. ..++++.....+.|+.....|+|+.
T Consensus       153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~  232 (389)
T COG2956         153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK  232 (389)
T ss_pred             HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence            3334555555555555554432221      11344444444455555444432 1122333334444444444444444


Q ss_pred             HHh
Q 040780           91 CLS   93 (95)
Q Consensus        91 al~   93 (95)
                      |++
T Consensus       233 AV~  235 (389)
T COG2956         233 AVE  235 (389)
T ss_pred             HHH
Confidence            443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.13  E-value=0.2  Score=42.63  Aligned_cols=93  Identities=15%  Similarity=0.196  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHH-HHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHH
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYM-QAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAA   79 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~l-lA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A   79 (95)
                      ++..+-+-++..-.++.+.|+.|+=+=..+....+ +...||+ +|.||...|+|.+|+....+. .+.+.+...|.-.|
T Consensus       411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La  490 (895)
T KOG2076|consen  411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA  490 (895)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence            45567778888999999999999998888887775 3344544 599999999999998766553 23356778888888


Q ss_pred             HHHHHcccHHHHHhcC
Q 040780           80 KCLEELKEWEQCLSML   95 (95)
Q Consensus        80 ~c~~~l~~~~eal~~L   95 (95)
                      --..++|+.++|+.+|
T Consensus       491 sl~~~~g~~EkalEtL  506 (895)
T KOG2076|consen  491 SLYQQLGNHEKALETL  506 (895)
T ss_pred             HHHHhcCCHHHHHHHH
Confidence            8889999999998765

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.07  E-value=0.037  Score=28.30  Aligned_cols=30  Identities=17%  Similarity=0.155  Sum_probs=25.3

Q ss_pred             HHHhhhcC-CchhHHHHHHHHhhCCCHHHHH
Q 040780           30 DKVAALTN-DPADVYMQAQALFLGRHYRRAF   59 (95)
Q Consensus        30 ekl~a~~~-~~~~~~llA~~l~~~~~~~~A~   59 (95)
                      +|.+.++| +++..+.||.+|...|++.+|.
T Consensus         3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            57777886 7888899999999999998875

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.00  E-value=0.26  Score=28.56  Aligned_cols=59  Identities=12%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhc---CC-----chhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALT---ND-----PADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~---~~-----~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      ..-+..+-.-+..+++|+.|+=+-++.+.+.   ++     ....+-+|.|+...|++.+|...+++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4455666677889999999999999998774   21     22567789999999999999998876

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.97  E-value=0.13  Score=38.09  Aligned_cols=81  Identities=14%  Similarity=0.060  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC----CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChh---hH
Q 040780            4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN----DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLR---FR   75 (95)
Q Consensus         4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~----~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~---c~   75 (95)
                      ...+.|-+-....|+.++|++|+=.=|++-+..|    ++.....++.++|.+|+|..|...+++. .+.++|+.   ..
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            3567888889999999999999999999998886    4668999999999999999999988764 23344544   46


Q ss_pred             HHHHHHHHH
Q 040780           76 YLAAKCLEE   84 (95)
Q Consensus        76 yL~A~c~~~   84 (95)
                      ||.|.+.+.
T Consensus       112 YlkgLs~~~  120 (254)
T COG4105         112 YLKGLSYFF  120 (254)
T ss_pred             HHHHHHHhc
Confidence            777777654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=94.90  E-value=0.099  Score=43.24  Aligned_cols=81  Identities=10%  Similarity=0.129  Sum_probs=71.4

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ   90 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e   90 (95)
                      +..+-+..||+..+=+++.++.=.| +++++-+.|..+...|+-..|+..++.. ..+.++.-|-.++|--...-++|+|
T Consensus        14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e   93 (700)
T KOG1156|consen   14 ALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE   93 (700)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence            4457789999999999999999666 7899999999999999999999988753 2356788999999999999999999


Q ss_pred             HHh
Q 040780           91 CLS   93 (95)
Q Consensus        91 al~   93 (95)
                      ||.
T Consensus        94 aiK   96 (700)
T KOG1156|consen   94 AIK   96 (700)
T ss_pred             HHH
Confidence            986

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.85  E-value=0.37  Score=36.51  Aligned_cols=90  Identities=16%  Similarity=0.053  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHH-HHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVY-MQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~-llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      ..++|+.-=...+....|..|+=.-++++.++|...-.| --|.+|-..|+|..|++=.++. .+++.+....-=.+..+
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~  159 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY  159 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            456677766778889999999999999999987533333 3489999999999999977764 23333333333457888


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      +.+|+|.+|+..
T Consensus       160 ~~~gk~~~A~~a  171 (304)
T KOG0553|consen  160 LALGKYEEAIEA  171 (304)
T ss_pred             HccCcHHHHHHH
Confidence            899999999875

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.80  E-value=0.098  Score=40.43  Aligned_cols=86  Identities=13%  Similarity=0.110  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHccc
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKE   87 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~   87 (95)
                      ...|..-|.-+.|.+||-.----..-+| +...+.+||.|||+..+|..|..--..-+ +.++-..-|+-.|+++++.+.
T Consensus        14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i   93 (459)
T KOG4340|consen   14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI   93 (459)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence            3456666778889999865433333333 56689999999999999998866554421 334555678889999999999


Q ss_pred             HHHHHhcC
Q 040780           88 WEQCLSML   95 (95)
Q Consensus        88 ~~eal~~L   95 (95)
                      |-+|+.++
T Consensus        94 ~ADALrV~  101 (459)
T KOG4340|consen   94 YADALRVA  101 (459)
T ss_pred             cHHHHHHH
Confidence            99998763

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.75  E-value=0.24  Score=42.33  Aligned_cols=90  Identities=14%  Similarity=0.079  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHH
Q 040780            4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKC   81 (95)
Q Consensus         4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c   81 (95)
                      .+.++--.=|++.++.+|++.|+=-.+++..-.|+ +-..-+.|.++++.|++..|..+++... +-.++..-.=.+-.|
T Consensus         7 a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~   86 (932)
T KOG2053|consen    7 AMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNV   86 (932)
T ss_pred             ccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHH
Confidence            34556566699999999999999999999999874 5567777999999999999999997643 222344445556778


Q ss_pred             HHHcccHHHHHh
Q 040780           82 LEELKEWEQCLS   93 (95)
Q Consensus        82 ~~~l~~~~eal~   93 (95)
                      +.++++++++..
T Consensus        87 y~d~~~~d~~~~   98 (932)
T KOG2053|consen   87 YRDLGKLDEAVH   98 (932)
T ss_pred             HHHHhhhhHHHH
Confidence            889999999864

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=94.74  E-value=0.37  Score=37.35  Aligned_cols=91  Identities=11%  Similarity=0.073  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccCh----hhHHH
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDL----RFRYL   77 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~----~c~yL   77 (95)
                      =++.+..-++.+.++-..+.+.|.+|-.|.+..+| .....-.+|......|+|..|+..+.+--  ..++    ...-.
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~--eQn~~yl~evl~~  254 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL--EQNPEYLSEVLEM  254 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH--HhChHHHHHHHHH
Confidence            35566777888999999999999999999999996 67778889999999999999998887631  2222    23344


Q ss_pred             HHHHHHHcccHHHHHhcC
Q 040780           78 AAKCLEELKEWEQCLSML   95 (95)
Q Consensus        78 ~A~c~~~l~~~~eal~~L   95 (95)
                      ...|+-++|+.+|+++.|
T Consensus       255 L~~~Y~~lg~~~~~~~fL  272 (389)
T COG2956         255 LYECYAQLGKPAEGLNFL  272 (389)
T ss_pred             HHHHHHHhCCHHHHHHHH
Confidence            578888999999988754

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.66  E-value=0.14  Score=42.21  Aligned_cols=77  Identities=22%  Similarity=0.204  Sum_probs=66.9

Q ss_pred             HHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           17 VSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        17 l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      -..+..|.|+-+-|+++.+++ +|-..|--|+.+|..++|+.|...++.-+ +.++...-.||.|+.+-++|+.+.|+.
T Consensus       534 ~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~  612 (638)
T KOG1126|consen  534 HQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL  612 (638)
T ss_pred             HHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence            356789999999999999996 99999999999999999999999998643 445666778999999999999988864

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=94.48  E-value=0.35  Score=38.73  Aligned_cols=83  Identities=12%  Similarity=0.113  Sum_probs=63.9

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ   90 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e   90 (95)
                      -......++++.|.=.=+-|++..| |+--.-+.++.+...|++++|..-+++. .+.+..+...+.+|+.+++.|+++|
T Consensus       313 A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         313 ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence            3445667788888877777777665 3444445588999999999999999875 2344557788999999999999999


Q ss_pred             HHhcC
Q 040780           91 CLSML   95 (95)
Q Consensus        91 al~~L   95 (95)
                      |+..|
T Consensus       393 ai~~L  397 (484)
T COG4783         393 AIRIL  397 (484)
T ss_pred             HHHHH
Confidence            99865

>PRK14574 hmsH outer membrane protein; Provisional

Probab=94.47  E-value=0.43  Score=40.47  Aligned_cols=88  Identities=18%  Similarity=0.121  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~   84 (95)
                      +..+..+...+..+.++.|+=..|+++...| +++=...+|..+...|.+.+|...++.. .+.+.....++-.|.+..+
T Consensus       417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~  496 (822)
T PRK14574        417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA  496 (822)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence            4455677788899999999999999999997 6777778899999999999999999764 3456777889999999999


Q ss_pred             cccHHHHHhc
Q 040780           85 LKEWEQCLSM   94 (95)
Q Consensus        85 l~~~~eal~~   94 (95)
                      +++|++|..+
T Consensus       497 l~e~~~A~~~  506 (822)
T PRK14574        497 LQEWHQMELL  506 (822)
T ss_pred             hhhHHHHHHH
Confidence            9999999543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=94.45  E-value=0.16  Score=34.17  Aligned_cols=69  Identities=12%  Similarity=0.088  Sum_probs=51.4

Q ss_pred             HHHHHHHhhhcC------CchhHHHHHHHHhhCCCHHHHHHHHhcCc-cccc---ChhhHHHHHHHHHHcccHHHHHhc
Q 040780           26 IFFADKVAALTN------DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLR---DLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        26 iF~Aekl~a~~~------~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~---~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .-|+|....+.+      .....+.+|..+...|++..|+..+++.- ....   .....+..|.++.++|++++|+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~   94 (172)
T PRK02603         16 TVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY   94 (172)
T ss_pred             HHHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            468888777663      23357888999999999999999887531 1111   235678889999999999999864

>PRK14574 hmsH outer membrane protein; Provisional

Probab=94.43  E-value=0.29  Score=41.49  Aligned_cols=82  Identities=10%  Similarity=-0.049  Sum_probs=49.1

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC-Cch--hHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPA--DVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~--~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      .++.-+...++++.|+-+++|.+  ++ +..  .+-.+|..+...|+|.+|+.++++. ...+.++...+..+....+.+
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~  150 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG  150 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC
Confidence            45555566677777777777777  33 222  2222355677778888877777653 122334444444466667777


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      +.++|+..
T Consensus       151 q~~eAl~~  158 (822)
T PRK14574        151 RGGVVLKQ  158 (822)
T ss_pred             CHHHHHHH
Confidence            77777654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=94.27  E-value=0.42  Score=41.03  Aligned_cols=89  Identities=13%  Similarity=0.105  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccCh-----------
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDL-----------   72 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~-----------   72 (95)
                      ..+-+..+|..+.+.++++.|+=.++..+..+| .+.-.|.+|..++..+++..+.-+ +--+......           
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve~~~~~  108 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVEHICDK  108 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHHHHHHH
Confidence            355677888999999999999999999999987 677788889999999998888665 2222222222           


Q ss_pred             --------hhHHHHHHHHHHcccHHHHHhc
Q 040780           73 --------RFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        73 --------~c~yL~A~c~~~l~~~~eal~~   94 (95)
                              ...+-.|.|+-++|+++++..+
T Consensus       109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~  138 (906)
T PRK14720        109 ILLYGENKLALRTLAEAYAKLNENKKLKGV  138 (906)
T ss_pred             HHhhhhhhHHHHHHHHHHHHcCChHHHHHH
Confidence                    4678889999999999998764

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.15  E-value=0.1  Score=27.73  Aligned_cols=25  Identities=24%  Similarity=-0.028  Sum_probs=15.8

Q ss_pred             hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           40 ADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        40 ~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +..+.+|..|...|++.+|..++++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~   26 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRR   26 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4455666666666666666666654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.10  E-value=1.3  Score=30.66  Aligned_cols=85  Identities=18%  Similarity=0.091  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcc-cccChhhHHHHHH
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKI-VLRDLRFRYLAAK   80 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l-~~~~~~c~yL~A~   80 (95)
                      ++.+.-|-+++.-.+..+..+++.-+=+-+..+.| .++--..-|.-+...|++..|..+++.-.- ....+.|+=|.|.
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~   86 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL   86 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            67888999999999999999999999999999997 455555568889999999999999987421 1346788999999


Q ss_pred             HHHHccc
Q 040780           81 CLEELKE   87 (95)
Q Consensus        81 c~~~l~~   87 (95)
                      |++.+++
T Consensus        87 CL~~~~D   93 (160)
T PF09613_consen   87 CLYALGD   93 (160)
T ss_pred             HHHHcCC
Confidence            9999887

>TIGR00540 hemY_coli hemY protein

Probab=93.81  E-value=0.44  Score=36.52  Aligned_cols=74  Identities=14%  Similarity=0.074  Sum_probs=44.5

Q ss_pred             hCChhhHHHHHHHHhhhcC-Cc--hhHHHHHHHHhhCCCHHHHHHHHhc---CcccccChhhHHHHHHHHHHcccHHHHH
Q 040780           19 KHLYSSAIFFADKVAALTN-DP--ADVYMQAQALFLGRHYRRAFHLLNA---SKIVLRDLRFRYLAAKCLEELKEWEQCL   92 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~-~~--~~~~llA~~l~~~~~~~~A~~ll~~---~~l~~~~~~c~yL~A~c~~~l~~~~eal   92 (95)
                      ..+.+.++-..|+.+...| +|  .-...+|..+++.|+|..|...+++   ....+.+.... -.|..+.++|+.++|.
T Consensus       312 ~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A~  390 (409)
T TIGR00540       312 PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEAA  390 (409)
T ss_pred             CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHHH
Confidence            3445666666677666665 44  3344667777777777777777772   22223333333 4577777777776665


Q ss_pred             h
Q 040780           93 S   93 (95)
Q Consensus        93 ~   93 (95)
                      +
T Consensus       391 ~  391 (409)
T TIGR00540       391 A  391 (409)
T ss_pred             H
Confidence            4

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.77  E-value=0.11  Score=25.44  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=20.5

Q ss_pred             hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           40 ADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        40 ~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +..+.+|.+++..|+|..|+..+++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~   26 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEK   26 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4568899999999999999988876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=93.45  E-value=0.33  Score=35.57  Aligned_cols=52  Identities=19%  Similarity=0.107  Sum_probs=39.1

Q ss_pred             HHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           43 YMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        43 ~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ..+|.++...|++.+|...+++. .+.+.++......|.++++.|+++||+..
T Consensus       118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~  170 (355)
T cd05804         118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAF  170 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence            45567889999999998877764 22344566677788899999999998764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=93.44  E-value=0.26  Score=34.05  Aligned_cols=49  Identities=18%  Similarity=0.312  Sum_probs=43.6

Q ss_pred             HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +-..++|..||..-.+...+++ +|...+-.|.|++..|+...|..-++.
T Consensus        79 ~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~  128 (157)
T PRK15363         79 CQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKA  128 (157)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3457899999999999999996 899999999999999999999877765

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.39  E-value=0.31  Score=36.23  Aligned_cols=53  Identities=15%  Similarity=0.159  Sum_probs=44.8

Q ss_pred             HHHHHHHHhhCCCHHHHHHHH----hcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           42 VYMQAQALFLGRHYRRAFHLL----NASKIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        42 ~~llA~~l~~~~~~~~A~~ll----~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .|--|.-++.+|+|..|....    ++++-....+...|..|.|.+..|+|++|..+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~  200 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYI  200 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHH
Confidence            799999999999999997655    45544456788999999999999999998754

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.03  E-value=0.41  Score=37.84  Aligned_cols=81  Identities=19%  Similarity=0.149  Sum_probs=55.0

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcCCch--hHHHHHHHHhhCCCHHHHHHHHhcC--cccccChhhHHHHHHHHHHcccH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTNDPA--DVYMQAQALFLGRHYRRAFHLLNAS--KIVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~~~~--~~~llA~~l~~~~~~~~A~~ll~~~--~l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      ..+.+.+..|+-|+-+-|--..++..++  --.|+|.|+|+.|+|++|...-+.-  +-+... ..-.=.|-|.+-+|.|
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~-el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA-ELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc-ccchhHHHHHHHHHHH
Confidence            4677889999999988887766664333  3468999999999999997755431  111111 1112235677789999


Q ss_pred             HHHHhc
Q 040780           89 EQCLSM   94 (95)
Q Consensus        89 ~eal~~   94 (95)
                      .||..+
T Consensus       108 ~eA~~~  113 (557)
T KOG3785|consen  108 IEAKSI  113 (557)
T ss_pred             HHHHHH
Confidence            998754

>PRK11906 transcriptional regulator; Provisional

Probab=92.97  E-value=0.52  Score=37.62  Aligned_cols=72  Identities=15%  Similarity=0.050  Sum_probs=59.6

Q ss_pred             hhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           23 SSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        23 ~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ..|.=.|+|.+.+++ ++-..+.+|..+...|++..|..++++.. +.+......|..|.-+.-.|+.++|+..
T Consensus       321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~  394 (458)
T PRK11906        321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC  394 (458)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            458889999999996 78899999999999999999999998764 4456677788888888889999888753

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=92.78  E-value=1.2  Score=35.13  Aligned_cols=85  Identities=15%  Similarity=0.126  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      +||+.+..+...+.+.+||-+-+.++.+++=..+++.+ |.||..-|+++.|++=++.. ++...+...-|=.++-+|..
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV  236 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence            56677777778889999999999999999855666665 99999999999999977643 34444445555566666666


Q ss_pred             ccHHHHH
Q 040780           86 KEWEQCL   92 (95)
Q Consensus        86 ~~~~eal   92 (95)
                      +.-++++
T Consensus       237 gd~~~sL  243 (504)
T KOG0624|consen  237 GDAENSL  243 (504)
T ss_pred             hhHHHHH
Confidence            6555544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=92.66  E-value=0.14  Score=24.78  Aligned_cols=25  Identities=16%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           40 ADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        40 ~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +..|.+|.|++..|++.+|...++.
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~   25 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQR   25 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3578899999999999999888775

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.64  E-value=0.76  Score=37.49  Aligned_cols=81  Identities=19%  Similarity=0.233  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~   83 (95)
                      ++-+.=+--.+++..-++.||-+-||..-+.|+ ..--...|.|+.++|+|++|+.+.+.- .-.+..+.|.-...|-|-
T Consensus       626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~  705 (840)
T KOG2003|consen  626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG  705 (840)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence            344444556899999999999999999888764 344456699999999999999988652 123457788777777777


Q ss_pred             Hcc
Q 040780           84 ELK   86 (95)
Q Consensus        84 ~l~   86 (95)
                      ++|
T Consensus       706 dlg  708 (840)
T KOG2003|consen  706 DLG  708 (840)
T ss_pred             ccc
Confidence            655

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=92.57  E-value=0.34  Score=38.60  Aligned_cols=52  Identities=17%  Similarity=0.125  Sum_probs=34.7

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcCCch----hHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTNDPA----DVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~~~~----~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      .-+...+.|+.|+-..++.+.++|+..    ..|-+|-||-..|++..|+..+++.
T Consensus        83 ~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         83 LSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344556777777777777777776433    2567777777777777777777664

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.01  E-value=1.7  Score=34.15  Aligned_cols=81  Identities=12%  Similarity=0.081  Sum_probs=58.0

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHH--HHHHHHcccHH
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLA--AKCLEELKEWE   89 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~--A~c~~~l~~~~   89 (95)
                      +-+.++..|++..|.=.----+...+.++.-.+|+.+|.+-+|+.+|..++... ++...-.-.|+.  ||..-++++++
T Consensus       229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~g-ld~fP~~VT~l~g~ARi~eam~~~~  307 (478)
T KOG1129|consen  229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEG-LDSFPFDVTYLLGQARIHEAMEQQE  307 (478)
T ss_pred             HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhh-hhcCCchhhhhhhhHHHHHHHHhHH
Confidence            445688899999876544444444478888888999999999999999988753 333333344444  56666799998


Q ss_pred             HHHh
Q 040780           90 QCLS   93 (95)
Q Consensus        90 eal~   93 (95)
                      +|++
T Consensus       308 ~a~~  311 (478)
T KOG1129|consen  308 DALQ  311 (478)
T ss_pred             HHHH
Confidence            8875

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.71  E-value=0.96  Score=30.71  Aligned_cols=58  Identities=17%  Similarity=0.225  Sum_probs=46.9

Q ss_pred             CCchhHHHHHHHHhhCCCHHHHHHHHhc----CcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           37 NDPADVYMQAQALFLGRHYRRAFHLLNA----SKIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        37 ~~~~~~~llA~~l~~~~~~~~A~~ll~~----~~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .++..+|.-|+-.+.+|+|..|+..++.    ++.-........-.+.+.++.++|.+|+..
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~   69 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAA   69 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence            4678999999999999999999988864    222233456777889999999999999864

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.87  E-value=2.2  Score=34.80  Aligned_cols=87  Identities=13%  Similarity=0.145  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHH--HHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVY--MQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~--llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      ...++..=..+-.++.|++||=+-+....++|++ .+|  -.|-||-..|++...+.-.++. .+.+++....+=-|+..
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~  193 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH  193 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence            3455666677888999999999999999999874 343  3588999999999998877664 34455556666667788


Q ss_pred             HHcccHHHHHh
Q 040780           83 EELKEWEQCLS   93 (95)
Q Consensus        83 ~~l~~~~eal~   93 (95)
                      -.+|+++||+.
T Consensus       194 E~lg~~~eal~  204 (606)
T KOG0547|consen  194 EQLGKFDEALF  204 (606)
T ss_pred             HhhccHHHHHH
Confidence            88999999974

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=90.81  E-value=2  Score=32.44  Aligned_cols=81  Identities=19%  Similarity=0.165  Sum_probs=62.2

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHH---HHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYR---RAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~---~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      +-++.++.+++|.---.+.+-+.| +++-.-.+|.+++.+..-+   .+-.++++. .++..++..+++.|...++.++|
T Consensus       164 ~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~  243 (287)
T COG4235         164 RAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDY  243 (287)
T ss_pred             HHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence            457888999999988888888886 6777777888887765443   334455543 34567899999999999999999


Q ss_pred             HHHHhc
Q 040780           89 EQCLSM   94 (95)
Q Consensus        89 ~eal~~   94 (95)
                      .+|+..
T Consensus       244 ~~A~~~  249 (287)
T COG4235         244 AEAAAA  249 (287)
T ss_pred             HHHHHH
Confidence            999753

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=90.66  E-value=0.97  Score=32.65  Aligned_cols=57  Identities=12%  Similarity=0.110  Sum_probs=44.0

Q ss_pred             CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccCh---hhHHHHHHHHHHcccHHHHHhc
Q 040780           38 DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDL---RFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~---~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +++..|..|.-.+..|+|..|+..++.-. ..+.++   ...+-.|.++++.++|++|+..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~   91 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAA   91 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            56688999999999999999999887531 112222   2347889999999999999864

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.65  E-value=1.4  Score=35.56  Aligned_cols=53  Identities=13%  Similarity=0.261  Sum_probs=46.3

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCc
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASK   66 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~   66 (95)
                      +.--.+|.|..+.+++.=+..+.|+|...-++|.|++-+.+|.+|...+++-+
T Consensus       470 EyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  470 EYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             HHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            34456899999999999999999999999999999999999999999998754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=90.57  E-value=1  Score=29.46  Aligned_cols=57  Identities=21%  Similarity=0.166  Sum_probs=44.5

Q ss_pred             chhHHHHHHHHhhCCCHHHHHHHHhcC---ccccc-ChhhHHHHHHHHHHcccHHHHHhcC
Q 040780           39 PADVYMQAQALFLGRHYRRAFHLLNAS---KIVLR-DLRFRYLAAKCLEELKEWEQCLSML   95 (95)
Q Consensus        39 ~~~~~llA~~l~~~~~~~~A~~ll~~~---~l~~~-~~~c~yL~A~c~~~l~~~~eal~~L   95 (95)
                      |.-.|..|-++-..|++.+|+.+.++.   ++... ...+..-.|.++..+|+++||+.+|
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L   61 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALL   61 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            345788999999999999999988763   33221 2356677899999999999999764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=90.52  E-value=1.3  Score=32.60  Aligned_cols=51  Identities=8%  Similarity=-0.014  Sum_probs=44.7

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcC----CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTN----DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~----~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      .-+...++|+.|+...++++...|    .++.++.+|.++...|++..|...+++
T Consensus       188 ~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~  242 (263)
T PRK10803        188 QLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQ  242 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            456788999999999999998775    477889999999999999999998875

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=90.22  E-value=0.52  Score=41.08  Aligned_cols=81  Identities=12%  Similarity=0.033  Sum_probs=67.0

Q ss_pred             HHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHcccHHHHH
Q 040780           15 DCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEELKEWEQCL   92 (95)
Q Consensus        15 ~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l~~~~eal   92 (95)
                      .+++.++...|+=|.--.+-.+| +-+.---+++.|-.+|.|..|....++.. +.+.|...+|.-|-.--++|+|.|++
T Consensus       571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL  650 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence            35778889999988888777776 45555568999999999999999997764 45667888999999999999999999


Q ss_pred             hcC
Q 040780           93 SML   95 (95)
Q Consensus        93 ~~L   95 (95)
                      +++
T Consensus       651 d~l  653 (1238)
T KOG1127|consen  651 DAL  653 (1238)
T ss_pred             HHH
Confidence            864

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.15  E-value=2.2  Score=33.50  Aligned_cols=54  Identities=22%  Similarity=0.205  Sum_probs=47.8

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      +--.++....|+.|+=+++|++.+++ |...+|.-|+++...|+|.-|...+++.
T Consensus       263 lA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka  317 (397)
T KOG0543|consen  263 LAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKA  317 (397)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            33456778899999999999999995 8999999999999999999999988764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=90.06  E-value=1.4  Score=35.46  Aligned_cols=74  Identities=9%  Similarity=0.093  Sum_probs=50.9

Q ss_pred             hCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780           19 KHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL   92 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal   92 (95)
                      .-.|.+|+.++||..-.++ +.+..-+.|..+...|++..|+.-.+.. .+.+..+.|.=-.-.|+++.|++.||.
T Consensus       313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~  388 (564)
T KOG1174|consen  313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN  388 (564)
T ss_pred             hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence            4457788888888877774 6777777788888888888877666543 233344555545556777788888775

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=90.06  E-value=0.75  Score=34.34  Aligned_cols=93  Identities=16%  Similarity=0.228  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHHHHHHhc-CcccccChhhHHHHHH
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRAFHLLNA-SKIVLRDLRFRYLAAK   80 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A~~ll~~-~~l~~~~~~c~yL~A~   80 (95)
                      +++.+++.+--..+-..-.|++||=---|.++.+|.+.+-|.- |.|++..+++..+-.=.++ -.++.....--|..+.
T Consensus         7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~   86 (284)
T KOG4642|consen    7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ   86 (284)
T ss_pred             chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence            4566777776667777778899998777888888876555554 8899999988876553333 2344556677799999


Q ss_pred             HHHHcccHHHHHhcC
Q 040780           81 CLEELKEWEQCLSML   95 (95)
Q Consensus        81 c~~~l~~~~eal~~L   95 (95)
                      +....+.|.+||..|
T Consensus        87 ~~l~s~~~~eaI~~L  101 (284)
T KOG4642|consen   87 WLLQSKGYDEAIKVL  101 (284)
T ss_pred             HHHhhccccHHHHHH
Confidence            999999999999765

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=89.91  E-value=1.2  Score=35.64  Aligned_cols=58  Identities=16%  Similarity=0.123  Sum_probs=46.9

Q ss_pred             CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccCh---hhHHHHHHHHHHcccHHHHHhcC
Q 040780           38 DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDL---RFRYLAAKCLEELKEWEQCLSML   95 (95)
Q Consensus        38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~---~c~yL~A~c~~~l~~~~eal~~L   95 (95)
                      +++.-+-+|..|+..|+|..|+..+++. .+.+.+.   ...|-.|-|+.++|+++||+..|
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L  135 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCL  135 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5778888999999999999999998774 2334444   24788999999999999998753

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.87  E-value=1.3  Score=21.24  Aligned_cols=29  Identities=17%  Similarity=0.112  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcCC
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTND   38 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~~   38 (95)
                      ..+=.-+..+++|+.|+++.++.+.++|+
T Consensus         5 ~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    5 YYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34456678899999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=89.84  E-value=1.3  Score=37.48  Aligned_cols=75  Identities=15%  Similarity=0.143  Sum_probs=59.0

Q ss_pred             CChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-c-cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           20 HLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-I-VLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        20 ~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l-~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      -..+.+++-=|+.+..++ ||+.+|-+|.=|-..++...|...++..- + ...++.+-.|.|.|.-..+++.+|+++
T Consensus       458 ~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v  535 (799)
T KOG4162|consen  458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV  535 (799)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence            345677888888888886 78888888888888888888888776531 2 245788888899999899999988875

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=89.78  E-value=1.2  Score=23.45  Aligned_cols=39  Identities=21%  Similarity=0.072  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQ   47 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~   47 (95)
                      ...+-+-+..+++++.|+=+-++++..+| +++..+.+|+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            34566778999999999999999999997 5555555543

>PRK15331 chaperone protein SicA; Provisional

Probab=89.59  E-value=0.71  Score=32.12  Aligned_cols=50  Identities=22%  Similarity=0.221  Sum_probs=43.5

Q ss_pred             HHHHhCChhhHHHHHHHHhhhc-CCchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           15 DCVSKHLYSSAIFFADKVAALT-NDPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        15 ~~l~~~~y~~AiF~Aekl~a~~-~~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      -+-.+.+|+.|+..-.....++ ++|.-.|..|+|++..|+...|...+..
T Consensus        80 ~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~  130 (165)
T PRK15331         80 VCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFEL  130 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHH
Confidence            3445788999999999999998 4888999999999999999999887665

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.40  E-value=1.1  Score=36.03  Aligned_cols=66  Identities=18%  Similarity=0.267  Sum_probs=48.7

Q ss_pred             HHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           28 FADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        28 ~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      +.+++++.++ ..+-+|.-++.+|-.++|.||..+..+. .+..+|.....+.|+.++.+++.++|+-
T Consensus       288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I  355 (564)
T KOG1174|consen  288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI  355 (564)
T ss_pred             HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence            3344444442 3445566677888899999998887664 4557788889999999999999999864

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.82  E-value=6.6  Score=29.89  Aligned_cols=80  Identities=15%  Similarity=0.101  Sum_probs=57.3

Q ss_pred             HHHhCChhhHHHHHHHHhhhc-CCchhHHHHHHHHhhCCCHHHHHHHHhcCc----------------------------
Q 040780           16 CVSKHLYSSAIFFADKVAALT-NDPADVYMQAQALFLGRHYRRAFHLLNASK----------------------------   66 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~-~~~~~~~llA~~l~~~~~~~~A~~ll~~~~----------------------------   66 (95)
                      .+..+.+..|.=.-+-+.... .+.+-...||.||...|+...|..++..-+                            
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~  223 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ  223 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence            344566766666444444444 478899999999999999998888886421                            


Q ss_pred             -------ccccChhhHHHHHHHHHHcccHHHHHhcC
Q 040780           67 -------IVLRDLRFRYLAAKCLEELKEWEQCLSML   95 (95)
Q Consensus        67 -------l~~~~~~c~yL~A~c~~~l~~~~eal~~L   95 (95)
                             .++.+...++-.|.-+...|+.++|++.|
T Consensus       224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~L  259 (304)
T COG3118         224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHL  259 (304)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                   11224567888899988999999887643

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.80  E-value=0.76  Score=23.94  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             chhHHHHHHHHhhCCCHHHHHHHHh
Q 040780           39 PADVYMQAQALFLGRHYRRAFHLLN   63 (95)
Q Consensus        39 ~~~~~llA~~l~~~~~~~~A~~ll~   63 (95)
                      ++.+|-+|-+++..|+|..|.++.+
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~   25 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQ   25 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4678889999999999999988844

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.51  E-value=0.95  Score=35.58  Aligned_cols=55  Identities=11%  Similarity=0.174  Sum_probs=42.8

Q ss_pred             hHHHHHHHHhhCCCHHHHHHHHhcCccccc---------ChhhHHHHHHHHHHcccHHHHHhcC
Q 040780           41 DVYMQAQALFLGRHYRRAFHLLNASKIVLR---------DLRFRYLAAKCLEELKEWEQCLSML   95 (95)
Q Consensus        41 ~~~llA~~l~~~~~~~~A~~ll~~~~l~~~---------~~~c~yL~A~c~~~l~~~~eal~~L   95 (95)
                      ++--|...+.+.|+|+.|+..+++-.+..+         |..-.|=.|-|...+++|.||++++
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f  187 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTF  187 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHH
Confidence            444567789999999999999987544332         2334788899999999999999763

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=88.19  E-value=3.4  Score=35.94  Aligned_cols=76  Identities=13%  Similarity=0.280  Sum_probs=57.0

Q ss_pred             HHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcc--cccC--hhhHHHHHHHHHHcccHHHH
Q 040780           17 VSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKI--VLRD--LRFRYLAAKCLEELKEWEQC   91 (95)
Q Consensus        17 l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l--~~~~--~~c~yL~A~c~~~l~~~~ea   91 (95)
                      .+...|+.|+=.--+.+.+++ +|.-+-.||.=+|--|+|.++.++....-.  ..++  ....|..|||..+.|+|++|
T Consensus       247 ~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA  326 (1018)
T KOG2002|consen  247 NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA  326 (1018)
T ss_pred             cchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence            344567778888888888886 788888899999999999999888764311  1112  23468999999999999887


Q ss_pred             H
Q 040780           92 L   92 (95)
Q Consensus        92 l   92 (95)
                      -
T Consensus       327 ~  327 (1018)
T KOG2002|consen  327 F  327 (1018)
T ss_pred             H
Confidence            4

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.14  E-value=1.2  Score=21.02  Aligned_cols=22  Identities=27%  Similarity=0.147  Sum_probs=12.8

Q ss_pred             HHHHHHHHhhCCCHHHHHHHHh
Q 040780           42 VYMQAQALFLGRHYRRAFHLLN   63 (95)
Q Consensus        42 ~~llA~~l~~~~~~~~A~~ll~   63 (95)
                      .+.+|..+...|++.+|..+++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHh
Confidence            4555666666666666655543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PLN03218 maturation of RBCL 1; Provisional

Probab=88.10  E-value=5.3  Score=34.99  Aligned_cols=85  Identities=11%  Similarity=0.155  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhc--CCchhHHHHHHHHhhCCCHHHHHHHHhc---CcccccChhhHHHHHHHHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALT--NDPADVYMQAQALFLGRHYRRAFHLLNA---SKIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--~~~~~~~llA~~l~~~~~~~~A~~ll~~---~~l~~~~~~c~yL~A~c~~   83 (95)
                      ...+|.-+...+.++.|+-+-+++....  |+...--.+...|...|++.+|..+++.   .++.+. .......-.+|.
T Consensus       687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~  765 (1060)
T PLN03218        687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASE  765 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Confidence            4556666777777777777777765543  3444444566777778888888777763   222222 222222235666


Q ss_pred             HcccHHHHHhc
Q 040780           84 ELKEWEQCLSM   94 (95)
Q Consensus        84 ~l~~~~eal~~   94 (95)
                      +.+++++|..+
T Consensus       766 k~G~le~A~~l  776 (1060)
T PLN03218        766 RKDDADVGLDL  776 (1060)
T ss_pred             HCCCHHHHHHH
Confidence            77777777654

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=88.04  E-value=5.1  Score=30.76  Aligned_cols=80  Identities=13%  Similarity=0.126  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcCC--ch-hHHHHHHHHhhCCCHHHHHHHHhcCcc------cccChhhHHHHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTND--PA-DVYMQAQALFLGRHYRRAFHLLNASKI------VLRDLRFRYLAA   79 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~--~~-~~~llA~~l~~~~~~~~A~~ll~~~~l------~~~~~~c~yL~A   79 (95)
                      |-.-|+.-...|.|.||.-||--+++++|.  |- .++++=.--.+++||+--+.+.++...      ...-|+..|=.|
T Consensus       106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~a  185 (360)
T PF04910_consen  106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIA  185 (360)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHH
Confidence            445567777899999999999999999974  33 445555556788999988888876432      123567888889


Q ss_pred             HHHHHcccH
Q 040780           80 KCLEELKEW   88 (95)
Q Consensus        80 ~c~~~l~~~   88 (95)
                      -+.+.+++-
T Consensus       186 LA~~~l~~~  194 (360)
T PF04910_consen  186 LAYFRLEKE  194 (360)
T ss_pred             HHHHHhcCc
Confidence            999988876

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PLN03077 Protein ECB2; Provisional

Probab=87.98  E-value=6.8  Score=32.75  Aligned_cols=54  Identities=7%  Similarity=0.121  Sum_probs=32.0

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhc---CCchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALT---NDPADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~---~~~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      ++.-+-..+.++.|.-+-+.+....   |+.+.-..+...+.+.|++.+|..++++-
T Consensus       595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            4455555666666666666655322   33344455566677777777777776653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.98  E-value=3.6  Score=30.59  Aligned_cols=53  Identities=19%  Similarity=0.184  Sum_probs=24.7

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      ||.-......|.+|.++-|-+..-.+ ++.-+.-+|.|+...|+|..|..++..
T Consensus       173 wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~  226 (290)
T PF04733_consen  173 WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE  226 (290)
T ss_dssp             HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            34433334445555555555433332 333444455555555555555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.76  E-value=5.7  Score=29.50  Aligned_cols=89  Identities=16%  Similarity=0.106  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHh--hCC--CHHHHHHHHhcCcc-cccChhhHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALF--LGR--HYRRAFHLLNASKI-VLRDLRFRYLAAK   80 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~--~~~--~~~~A~~ll~~~~l-~~~~~~c~yL~A~   80 (95)
                      ++-+--.|+-+|..+++|-|.=--+++-.. .+.+-+..+|++..  ..|  +++.|+.+.+.-.- ...++......|-
T Consensus       131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~  209 (290)
T PF04733_consen  131 LELLALAVQILLKMNRPDLAEKELKNMQQI-DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV  209 (290)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            445556788999999999987666665443 34466777777543  344  69999888765211 1245666777889


Q ss_pred             HHHHcccHHHHHhcC
Q 040780           81 CLEELKEWEQCLSML   95 (95)
Q Consensus        81 c~~~l~~~~eal~~L   95 (95)
                      |...+|+|+||+.+|
T Consensus       210 ~~l~~~~~~eAe~~L  224 (290)
T PF04733_consen  210 CHLQLGHYEEAEELL  224 (290)
T ss_dssp             HHHHCT-HHHHHHHH
T ss_pred             HHHHhCCHHHHHHHH
Confidence            999999999998764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=87.73  E-value=2.2  Score=28.38  Aligned_cols=52  Identities=10%  Similarity=-0.147  Sum_probs=41.0

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHh-------hCCCHHHHHHHHhc
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALF-------LGRHYRRAFHLLNA   64 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~-------~~~~~~~A~~ll~~   64 (95)
                      -.-+...++++.|+...++++.+.+ .++....+|.++.       ..|++..|...+++
T Consensus        79 g~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033         79 GLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            3445668999999999999999986 5666777788888       88888877666654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=87.66  E-value=0.98  Score=25.54  Aligned_cols=25  Identities=20%  Similarity=0.204  Sum_probs=21.2

Q ss_pred             hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           40 ADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        40 ~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +-+|.+|..+|+.|+|..|...++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~   26 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDA   26 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4689999999999999999888775

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=87.63  E-value=9.4  Score=28.30  Aligned_cols=60  Identities=10%  Similarity=-0.131  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHH-HHHHHHhhCCCHHHHHHHHh
Q 040780            4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVY-MQAQALFLGRHYRRAFHLLN   63 (95)
Q Consensus         4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~-llA~~l~~~~~~~~A~~ll~   63 (95)
                      +..+.--++--.++.+|++..|.---||++..+|+...++ .+|..|-..|+..-|-+-.+
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yr   93 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYR   93 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHH
Confidence            4444455677789999999999999999999998655554 45888888887776655444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=87.51  E-value=1.1  Score=36.13  Aligned_cols=82  Identities=15%  Similarity=0.227  Sum_probs=53.1

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcC-------CchhHHHH--HHHHhhCCCHHHHHH---HHhcCcccccChhhHHH
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTN-------DPADVYMQ--AQALFLGRHYRRAFH---LLNASKIVLRDLRFRYL   77 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-------~~~~~~ll--A~~l~~~~~~~~A~~---ll~~~~l~~~~~~c~yL   77 (95)
                      +..-.+.+..++.+- +|+-|..+...+       +.+=.-.|  |+=+|..|+|+.|+.   ++.+-   ..++..+=|
T Consensus       425 Kq~Y~qaLs~~~~~r-LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i---aPS~~~~RL  500 (549)
T PF07079_consen  425 KQAYKQALSMHAIPR-LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI---APSPQAYRL  500 (549)
T ss_pred             HHHHHHHHhhhhHHH-HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh---CCcHHHHHH
Confidence            333445555555543 455555555443       12212222  556899999999976   44442   358889999


Q ss_pred             HHHHHHHcccHHHHHhcC
Q 040780           78 AAKCLEELKEWEQCLSML   95 (95)
Q Consensus        78 ~A~c~~~l~~~~eal~~L   95 (95)
                      .|-|++..++|+||.+.|
T Consensus       501 lGl~l~e~k~Y~eA~~~l  518 (549)
T PF07079_consen  501 LGLCLMENKRYQEAWEYL  518 (549)
T ss_pred             HHHHHHHHhhHHHHHHHH
Confidence            999999999999997653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>smart00028 TPR Tetratricopeptide repeats

Probab=86.77  E-value=1.1  Score=19.73  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=20.1

Q ss_pred             hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           40 ADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        40 ~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +..+.+|.+++..|++..|...++.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~   26 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEK   26 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3467789999999999999887765

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.72  E-value=2.7  Score=33.09  Aligned_cols=75  Identities=19%  Similarity=0.172  Sum_probs=60.1

Q ss_pred             HHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhh--------HHHHHHHHHHccc
Q 040780           17 VSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRF--------RYLAAKCLEELKE   87 (95)
Q Consensus        17 l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c--------~yL~A~c~~~l~~   87 (95)
                      ++.+-|++|.-.|+|.+.+++ +.=+.+.+|.++-++|+++.+..+..+..   ....|        -.=.|-|+++-.+
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te---d~Wr~s~mlasHNyWH~Al~~iE~ae  262 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE---DDWRQSWMLASHNYWHTALFHIEGAE  262 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc---cchhhhhHHHhhhhHHHHHhhhcccc
Confidence            467889999999999999997 56689999999999999999999998752   22222        2335778888888


Q ss_pred             HHHHHhc
Q 040780           88 WEQCLSM   94 (95)
Q Consensus        88 ~~eal~~   94 (95)
                      |+.|+.+
T Consensus       263 ye~aleI  269 (491)
T KOG2610|consen  263 YEKALEI  269 (491)
T ss_pred             hhHHHHH
Confidence            8888764

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=86.61  E-value=4.8  Score=32.22  Aligned_cols=82  Identities=17%  Similarity=0.157  Sum_probs=58.6

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcCC--chhHHHH---HHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTND--PADVYMQ---AQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~--~~~~~ll---A~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      -=.+.-.+|.|..|--.---.+.++|+  ..++.+|   |.+..+.|+...|+.-.+.. .++..-+......|+|...+
T Consensus       255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l  334 (486)
T KOG0550|consen  255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL  334 (486)
T ss_pred             hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence            334566778888877666666677762  2233333   67888899999998877664 34455566777889999999


Q ss_pred             ccHHHHHh
Q 040780           86 KEWEQCLS   93 (95)
Q Consensus        86 ~~~~eal~   93 (95)
                      ++|++|+.
T Consensus       335 e~~e~AV~  342 (486)
T KOG0550|consen  335 EKWEEAVE  342 (486)
T ss_pred             HHHHHHHH
Confidence            99999974

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=86.47  E-value=2.3  Score=28.74  Aligned_cols=64  Identities=25%  Similarity=0.158  Sum_probs=46.8

Q ss_pred             HHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHH
Q 040780           26 IFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWE   89 (95)
Q Consensus        26 iF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~   89 (95)
                      .--|.+++.+-++.+.|.--|+-.+..|+|.-|.++++.- ...+.+...+.|.|.++.+++.-.
T Consensus        57 ~~~A~~~v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   57 EEEAKRYVELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            3457778888888899999999999999999998888752 123456778888898888876543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=86.17  E-value=2.5  Score=34.04  Aligned_cols=47  Identities=15%  Similarity=-0.015  Sum_probs=25.7

Q ss_pred             HhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           18 SKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        18 ~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      ..++++.|.-..+|..++.++...-.++|.++...|++.+|....++
T Consensus       432 ~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~  478 (517)
T PRK10153        432 VKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYST  478 (517)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34555555555555555555544555555555555555555555543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.75  E-value=3.5  Score=32.78  Aligned_cols=48  Identities=13%  Similarity=0.091  Sum_probs=30.4

Q ss_pred             hHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccH
Q 040780           41 DVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus        41 ~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      ...+||.||.++|++.-|..+.-+..-........=|.|.-|++.++|
T Consensus       430 Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eF  477 (557)
T KOG3785|consen  430 YKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEF  477 (557)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence            455789999999999999887654321111222334567777776664

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=85.16  E-value=7.8  Score=31.40  Aligned_cols=88  Identities=10%  Similarity=-0.000  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhh--------cCCchhHH-HHHHHHhhCCCHHHHHHHHhcCcc------ccc
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAAL--------TNDPADVY-MQAQALFLGRHYRRAFHLLNASKI------VLR   70 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~--------~~~~~~~~-llA~~l~~~~~~~~A~~ll~~~~l------~~~   70 (95)
                      ..-++.+...+-.+++|+.|+=+....+-.        .+...+.- .+|..|...++|..|+.+.++.--      =..
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            445666899999999999999999998877        22222333 489999999999999999876310      023


Q ss_pred             Chhh--HHH-HHHHHHHcccHHHHHh
Q 040780           71 DLRF--RYL-AAKCLEELKEWEQCLS   93 (95)
Q Consensus        71 ~~~c--~yL-~A~c~~~l~~~~eal~   93 (95)
                      |+.-  .+. .|..+++.|||.||..
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~  304 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEE  304 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHH
Confidence            3322  111 2556689999999864

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.16  E-value=1.6  Score=21.23  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=18.1

Q ss_pred             hHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           41 DVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        41 ~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      ..+.+|.+++..|+|..|+...++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~   26 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQR   26 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHH
Confidence            456778888888888888887765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.90  E-value=3  Score=34.12  Aligned_cols=75  Identities=16%  Similarity=0.192  Sum_probs=49.1

Q ss_pred             HHhCChhhHHHHHHHHhhhcCCchhHHH---HHHHHhhCCCHHHHHHHHhcCcc-cccChhhHHHHHHHHHHcccHHHHH
Q 040780           17 VSKHLYSSAIFFADKVAALTNDPADVYM---QAQALFLGRHYRRAFHLLNASKI-VLRDLRFRYLAAKCLEELKEWEQCL   92 (95)
Q Consensus        17 l~~~~y~~AiF~Aekl~a~~~~~~~~~l---lA~~l~~~~~~~~A~~ll~~~~l-~~~~~~c~yL~A~c~~~l~~~~eal   92 (95)
                      +-.++|+.|+==-||..+++|  +++|-   +|-.+|+.+++..+++..+.... .++.+.|--+||..+.+.++|+.|+
T Consensus       405 flL~q~e~A~aDF~Kai~L~p--e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~  482 (606)
T KOG0547|consen  405 FLLQQYEEAIADFQKAISLDP--ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV  482 (606)
T ss_pred             HHHHHHHHHHHHHHHHhhcCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH
Confidence            445566666666666666654  33333   34467777777777776654321 2567778888999999988888886


Q ss_pred             h
Q 040780           93 S   93 (95)
Q Consensus        93 ~   93 (95)
                      .
T Consensus       483 k  483 (606)
T KOG0547|consen  483 K  483 (606)
T ss_pred             H
Confidence            4

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=84.32  E-value=3.1  Score=33.54  Aligned_cols=78  Identities=17%  Similarity=0.138  Sum_probs=53.3

Q ss_pred             HHHHhCChhhHHHHHHHHhhhcC----CchhHHHH--------HHHHhhCCCHHHHHHHHhcC-cccccChhhHHH-HHH
Q 040780           15 DCVSKHLYSSAIFFADKVAALTN----DPADVYMQ--------AQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYL-AAK   80 (95)
Q Consensus        15 ~~l~~~~y~~AiF~Aekl~a~~~----~~~~~~ll--------A~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL-~A~   80 (95)
                      ....-+++.+|+-+++|-.++++    +++|++-.        ..||.+.++++-|..=..+. .+.+.+ .+-.| -|-
T Consensus       192 ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~-frnHLrqAa  270 (569)
T PF15015_consen  192 YAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY-FRNHLRQAA  270 (569)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch-hhHHHHHHH
Confidence            34566889999999999988883    56677655        56999999999997655432 221222 22222 355


Q ss_pred             HHHHcccHHHHHh
Q 040780           81 CLEELKEWEQCLS   93 (95)
Q Consensus        81 c~~~l~~~~eal~   93 (95)
                      |-..+.+|.||-.
T Consensus       271 vfR~LeRy~eAar  283 (569)
T PF15015_consen  271 VFRRLERYSEAAR  283 (569)
T ss_pred             HHHHHHHHHHHHH
Confidence            6667899998753

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=84.21  E-value=12  Score=30.56  Aligned_cols=50  Identities=10%  Similarity=-0.023  Sum_probs=28.3

Q ss_pred             HHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           43 YMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        43 ~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      -.+..+|...|++..|..+++.-.  .++.........++.+.|++++|+.+
T Consensus       162 n~Li~~y~k~g~~~~A~~lf~~m~--~~~~~t~n~li~~~~~~g~~~~A~~l  211 (697)
T PLN03081        162 NRVLLMHVKCGMLIDARRLFDEMP--ERNLASWGTIIGGLVDAGNYREAFAL  211 (697)
T ss_pred             HHHHHHHhcCCCHHHHHHHHhcCC--CCCeeeHHHHHHHHHHCcCHHHHHHH
Confidence            344556666666666666666532  23333344445555666777776654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=84.09  E-value=12  Score=27.26  Aligned_cols=91  Identities=14%  Similarity=0.097  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHhC-ChhhHHHHHHHHhhhc----C----Cch-------hHHHHHHHHhhCCCHHHH---HHHHhc
Q 040780            4 EEIEKLRGVVRDCVSKH-LYSSAIFFADKVAALT----N----DPA-------DVYMQAQALFLGRHYRRA---FHLLNA   64 (95)
Q Consensus         4 ~~~~~Lr~~v~~~l~~~-~y~~AiF~Aekl~a~~----~----~~~-------~~~llA~~l~~~~~~~~A---~~ll~~   64 (95)
                      ++...+-..-.+.+... .|++|+||=++.+.+.    +    +++       -+..+|.++...+.+...   ..+++-
T Consensus        33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~  112 (278)
T PF08631_consen   33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRL  112 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            44555666667778888 9999999999998883    1    222       566789999998887644   333321


Q ss_pred             C-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           65 S-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        65 ~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      - +..+.++...+|.-+.+.+....+++.++
T Consensus       113 l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~  143 (278)
T PF08631_consen  113 LESEYGNKPEVFLLKLEILLKSFDEEEYEEI  143 (278)
T ss_pred             HHHhCCCCcHHHHHHHHHHhccCChhHHHHH
Confidence            1 11245677777888888885555555443

It is also involved in sporulation [].

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=84.02  E-value=9  Score=24.63  Aligned_cols=81  Identities=20%  Similarity=0.156  Sum_probs=57.1

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcCC-----------------------chhHHHHHHHHhhCCCHHHHHHHHhcC-cccc
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTND-----------------------PADVYMQAQALFLGRHYRRAFHLLNAS-KIVL   69 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~~-----------------------~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~   69 (95)
                      ......+..+.++-..++++++-++                       .+.+-.++..+...|++..|..++++. ..++
T Consensus        14 ~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP   93 (146)
T PF03704_consen   14 RAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDP   93 (146)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence            3446677889999999998888731                       114455677889999999999988764 2334


Q ss_pred             cChhhHHHHHHHHHHcccHHHHHhc
Q 040780           70 RDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        70 ~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+........+++...|+..+|+.+
T Consensus        94 ~~E~~~~~lm~~~~~~g~~~~A~~~  118 (146)
T PF03704_consen   94 YDEEAYRLLMRALAAQGRRAEALRV  118 (146)
T ss_dssp             T-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCcCHHHHHHH
Confidence            5667778889999999999999864

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03218 maturation of RBCL 1; Provisional

Probab=83.88  E-value=14  Score=32.44  Aligned_cols=83  Identities=16%  Similarity=0.124  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhc--CCchhHHHHHHHHhhCCCHHHHHHHHhcC---cccccChhhHHHHHHHHHH
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALT--NDPADVYMQAQALFLGRHYRRAFHLLNAS---KIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~--~~~~~~~llA~~l~~~~~~~~A~~ll~~~---~l~~~~~~c~yL~A~c~~~   84 (95)
                      ..+|.-+...+.++.|+.+-+++....  |+....-.+...+...|++..|..+++.-   +. ..+.........+|.+
T Consensus       618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-~pd~~tynsLI~ay~k  696 (1060)
T PLN03218        618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI-KLGTVSYSSLMGACSN  696 (1060)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHh
Confidence            344555555666666666666655443  22223334455566666666666555431   11 1122233333445555


Q ss_pred             cccHHHHHh
Q 040780           85 LKEWEQCLS   93 (95)
Q Consensus        85 l~~~~eal~   93 (95)
                      .|++++|+.
T Consensus       697 ~G~~eeA~~  705 (1060)
T PLN03218        697 AKNWKKALE  705 (1060)
T ss_pred             CCCHHHHHH
Confidence            566665554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=83.60  E-value=12  Score=32.01  Aligned_cols=91  Identities=19%  Similarity=0.138  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHH------------------HHHHhhhc-CCchhHHHHHHHHhhCCCHHHHHHHHh
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFF------------------ADKVAALT-NDPADVYMQAQALFLGRHYRRAFHLLN   63 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~------------------Aekl~a~~-~~~~~~~llA~~l~~~~~~~~A~~ll~   63 (95)
                      |.++.++..+++.-....+++.|||=                  -|+..-.+ +..+..+.+|.|+-..|+-..|..+++
T Consensus       302 d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~  381 (799)
T KOG4162|consen  302 DAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLR  381 (799)
T ss_pred             HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence            55667777778888888888888771                  12211111 357899999999999999999999998


Q ss_pred             cCc-cc--ccChhhHHHHHHHHH-HcccHHHHHh
Q 040780           64 ASK-IV--LRDLRFRYLAAKCLE-ELKEWEQCLS   93 (95)
Q Consensus        64 ~~~-l~--~~~~~c~yL~A~c~~-~l~~~~eal~   93 (95)
                      +.- ..  +.++.-..++++-|+ .++..+||++
T Consensus       382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegld  415 (799)
T KOG4162|consen  382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLD  415 (799)
T ss_pred             hhcccccCCCcchHHHHHHHHHHhchhhhhhHHH
Confidence            752 21  222333344455444 6999999986

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=83.44  E-value=2.4  Score=21.39  Aligned_cols=23  Identities=9%  Similarity=0.101  Sum_probs=18.6

Q ss_pred             HHHHHHHHhhCCCHHHHHHHHhc
Q 040780           42 VYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        42 ~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      ...+|..+...|+|.+|+.+.++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            45689999999999999988876

>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion)

Probab=83.26  E-value=11  Score=24.88  Aligned_cols=87  Identities=18%  Similarity=0.027  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHH
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKC   81 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c   81 (95)
                      -++...|-++---....|..+.|.-.||=+-..++..+.|-+. ..++...|+|.+|..+-..    ...|..--++|.|
T Consensus         3 ~~l~~lLAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~----~~~pdL~p~~AL~   78 (116)
T PF09477_consen    3 RELRRLLAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQC----HCYPDLEPWAALC   78 (116)
T ss_dssp             HHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTT----S--GGGHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhccc----CCCccHHHHHHHH
Confidence            3455566666666778899999999999998888766665554 8899999999999333222    3455666688999


Q ss_pred             HHHcccHHHHHh
Q 040780           82 LEELKEWEQCLS   93 (95)
Q Consensus        82 ~~~l~~~~eal~   93 (95)
                      -.++|--.++..
T Consensus        79 a~klGL~~~~e~   90 (116)
T PF09477_consen   79 AWKLGLASALES   90 (116)
T ss_dssp             HHHCT-HHHHHH
T ss_pred             HHhhccHHHHHH
Confidence            999887776654

The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=83.09  E-value=5.7  Score=32.44  Aligned_cols=56  Identities=7%  Similarity=0.051  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      ...++.-+-.+++++.|...++++..+.| +...-..++..|...|++..|..+.+.
T Consensus       497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~  553 (697)
T PLN03081        497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET  553 (697)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence            55667777789999999999999988886 455666778999999999999888753

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=83.01  E-value=12  Score=30.63  Aligned_cols=87  Identities=16%  Similarity=0.162  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH---HHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ---AQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKC   81 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll---A~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c   81 (95)
                      .+.-|.-=.++...+.|.+|+-.-++.+..+  |+|.-++   |.||...|++.+|+.=.+... +++..+..-.=.|.|
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~a  435 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAA  435 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            4455566678888999999999999955554  4444444   779999999999988655432 333444444445888


Q ss_pred             HHHcccHHHHHhc
Q 040780           82 LEELKEWEQCLSM   94 (95)
Q Consensus        82 ~~~l~~~~eal~~   94 (95)
                      +..+++|+.|+++
T Consensus       436 l~~mk~ydkAlea  448 (539)
T KOG0548|consen  436 LRAMKEYDKALEA  448 (539)
T ss_pred             HHHHHHHHHHHHH
Confidence            8999999988764

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=82.38  E-value=11  Score=24.61  Aligned_cols=81  Identities=17%  Similarity=0.021  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      .|-++.-----+|..+.|.-.||=+.......+-|-+. ..++...|+|..|..+.+..    ..|..--++|.|-.++|
T Consensus         7 lLAE~AL~gTG~HcHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~rlG   82 (115)
T TIGR02508         7 LLAEIALIGTGHHCHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEWRLG   82 (115)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHHhhc
Confidence            34444444456788899999999987776555655554 67889999999999998875    25556667899988888


Q ss_pred             cHHHHH
Q 040780           87 EWEQCL   92 (95)
Q Consensus        87 ~~~eal   92 (95)
                      .-.+..
T Consensus        83 l~s~l~   88 (115)
T TIGR02508        83 LGSALE   88 (115)
T ss_pred             cHHHHH
Confidence            765543

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=82.32  E-value=3.2  Score=31.54  Aligned_cols=50  Identities=10%  Similarity=0.017  Sum_probs=39.7

Q ss_pred             HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780           16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      +...++|++|+==||+.+.++| ....--.++.+++..|+|..|+...++.
T Consensus       125 y~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKa  175 (304)
T KOG0553|consen  125 YSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKA  175 (304)
T ss_pred             HHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhh
Confidence            4566777777777777777776 4557778899999999999999986654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.04  E-value=12  Score=28.21  Aligned_cols=41  Identities=17%  Similarity=0.097  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc--CCchhHH
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALT--NDPADVY   43 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--~~~~~~~   43 (95)
                      .|.++..+..+.-+.++|..++|.---||..-..  .+|++..
T Consensus        88 sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~Al  130 (308)
T KOG1585|consen   88 SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDAL  130 (308)
T ss_pred             HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHH
Confidence            5778888999999999999999999999976655  3566443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=81.46  E-value=2.3  Score=24.03  Aligned_cols=21  Identities=24%  Similarity=0.192  Sum_probs=18.1

Q ss_pred             hhHHHHHHHHHHcccHHHHHh
Q 040780           73 RFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        73 ~c~yL~A~c~~~l~~~~eal~   93 (95)
                      .|.|..|-.++++|+|++|..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~   22 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARR   22 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHH
Confidence            488999999999999999975

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=81.43  E-value=3.6  Score=19.78  Aligned_cols=24  Identities=13%  Similarity=0.130  Sum_probs=19.3

Q ss_pred             hHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           41 DVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        41 ~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      ..+.+|.++...|++..|...+++
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~   26 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEK   26 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            457788888888888888887765

...

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=81.21  E-value=3.2  Score=20.57  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=19.9

Q ss_pred             hHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           41 DVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        41 ~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +...+|.+|...|++.+|..+.++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~   27 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEE   27 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHH
Confidence            566789999999999999998876

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=80.86  E-value=21  Score=26.63  Aligned_cols=47  Identities=17%  Similarity=0.093  Sum_probs=25.6

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHH
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRA   58 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A   58 (95)
                      .+...+.+++|..|+=..-|+..++| +.+-.-.+|-+|-+.|+...|
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~A  153 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEA  153 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHH
Confidence            44555556666666666666666654 444444455555555554444

>PLN03077 Protein ECB2; Provisional

Probab=80.69  E-value=20  Score=29.96  Aligned_cols=85  Identities=9%  Similarity=0.038  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhc--CCchhHHHHHHHHhhCCCHHHHHHHHhc----CcccccChhhHHHHHHHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALT--NDPADVYMQAQALFLGRHYRRAFHLLNA----SKIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--~~~~~~~llA~~l~~~~~~~~A~~ll~~----~~l~~~~~~c~yL~A~c~   82 (95)
                      ...+|.-+..+++.+.|+-+-+++....  |+....-.+-..+...|...+|..+++.    +++. .+..........+
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~-P~~~~y~~lv~~l  635 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT-PNLKHYACVVDLL  635 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHH
Confidence            4567778888899999999888887654  3333333445667888999999888764    3322 2223334456677


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      .+.|+++||++.
T Consensus       636 ~r~G~~~eA~~~  647 (857)
T PLN03077        636 GRAGKLTEAYNF  647 (857)
T ss_pred             HhCCCHHHHHHH
Confidence            788999998764

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=80.38  E-value=3.7  Score=25.35  Aligned_cols=32  Identities=28%  Similarity=0.322  Sum_probs=24.9

Q ss_pred             HHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHH
Q 040780           31 KVAALTN-DPADVYMQAQALFLGRHYRRAFHLL   62 (95)
Q Consensus        31 kl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll   62 (95)
                      +.++.+| +++..|-+|..+...|++..|+..+
T Consensus        13 ~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~L   45 (90)
T PF14561_consen   13 AALAANPDDLDARYALADALLAAGDYEEALDQL   45 (90)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3455565 6789999999999999999998855

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=80.26  E-value=3.3  Score=32.57  Aligned_cols=85  Identities=12%  Similarity=0.084  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcC-----Cch-----------hHHHHHHHHhhCCCHHHHHHHHhcC-cccccCh
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTN-----DPA-----------DVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDL   72 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-----~~~-----------~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~   72 (95)
                      |.-=..+...+.|..|+---||++..-+     +++           .-.=+|-|+...++|..|+....+. .+.+.+.
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~  291 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV  291 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence            3333456677888888888888555432     111           2233688999999999999887765 2345678


Q ss_pred             hhHHHHHHHHHHcccHHHHHhc
Q 040780           73 RFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        73 ~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ...|=-|+++..+++|+.|++.
T Consensus       292 KALyRrG~A~l~~~e~~~A~~d  313 (397)
T KOG0543|consen  292 KALYRRGQALLALGEYDLARDD  313 (397)
T ss_pred             hHHHHHHHHHHhhccHHHHHHH
Confidence            8888899999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
2xpi_A	597	Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1		5e-06

>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1 Length = 597

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 15  DCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRF 74
           D + +  Y  A F  +KV  +T +P D +  AQ       Y RA  LL    +  R    
Sbjct: 93  DALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSAC 152
Query: 75  RYLAAKCLEELKEWEQCLSML 95
           RYLAA CL +L +W+  L++L
Sbjct: 153 RYLAAFCLVKLYDWQGALNLL 173

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-26

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 98.4 bits (245), Expect = 8e-26
 Identities = 29/93 (31%), Positives = 42/93 (45%)

Query: 2   REEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHL 61
                + LR    D + +  Y  A F  +KV  +T +P D +  AQ       Y RA  L
Sbjct: 80  SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCL 139

Query: 62  LNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM 94
           L    +  R    RYLAA CL +L +W+  L++
Sbjct: 140 LTKEDLYNRSSACRYLAAFCLVKLYDWQGALNL 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	99.45
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.72
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.71
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.7
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.67
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.65
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.63
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.62
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.61
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.59
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.56
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.53
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.51
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.5
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.45
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.41
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.39
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.38
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.38
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.35
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.35
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.32
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.3
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.27
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.27
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.27
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.26
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.24
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.22
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.21
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.21
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.14
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.11
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.1
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.1
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.06
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.02
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.02
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.01
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.99
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.99
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.99
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.98
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.97
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.97
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.97
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.96
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.95
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.95
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.92
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.92
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.9
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.89
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.89
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.88
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.88
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.87
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.85
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.84
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.83
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.83
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.82
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.82
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.81
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.77
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.76
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.75
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.73
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.73
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.71
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.69
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.68
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.65
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.65
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.64
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.62
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.62
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.61
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.57
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.57
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.57
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.55
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.55
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.54
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.54
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.54
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.54
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.52
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.52
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.51
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.51
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.5
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.48
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.47
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.47
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.45
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.41
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.38
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.37
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.34
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.34
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.32
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.29
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.28
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.28
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.27
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.23
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.2
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.19
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.17
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.17
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.16
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.16
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.13
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.03
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.02
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.0
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.0
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.95
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.94
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.93
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.91
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.88
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.88
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.86
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.86
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.85
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.83
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.79
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.78
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.78
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.69
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.69
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.69
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.66
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.58
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.53
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.49
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.44
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.44
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.24
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.18
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.01
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	95.99
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	95.8
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.75
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.74
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.71
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	95.64
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.61
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.6
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.54
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	95.52
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.5
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.49
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	95.44
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.4
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.23
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.03
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	94.65
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	94.54
4g1t_A	472	Interferon-induced protein with tetratricopeptide	94.37
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	94.32
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.18
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	93.79
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	93.41
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	93.34
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	93.29
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.04
1klx_A	138	Cysteine rich protein B; structural genomics, heli	92.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.55
4g1t_A	472	Interferon-induced protein with tetratricopeptide	91.66
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	91.59
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.25
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.21
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	90.93
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	90.42
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	90.24
2p58_C	116	Putative type III secretion protein YSCG; type III	89.9
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	89.65
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.13
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	88.98
1pc2_A	152	Mitochondria fission protein; unknown function; NM	87.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	87.79
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	87.66
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	85.79
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	85.1
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.35
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	83.5
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	83.13
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	82.59
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	80.8
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	80.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	80.17

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=99.45  E-value=1.7e-13  Score=93.98  Aligned_cols=88  Identities=24%  Similarity=0.412  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-Cch---------hHHHHHHHHhhCCCHHHHHHHHhc----CcccccC--
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPA---------DVYMQAQALFLGRHYRRAFHLLNA----SKIVLRD--   71 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~---------~~~llA~~l~~~~~~~~A~~ll~~----~~l~~~~--   71 (95)
                      -|++.|+..++.++|++|++.+++++++++ +++         .++++|+++|..|+|.||....++    .+...+.  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            478899999999999999999999999995 333         569999999999999999988875    2221111  


Q ss_pred             --------------------hhhHHHHHHHHHHcccHHHHHhcC
Q 040780           72 --------------------LRFRYLAAKCLEELKEWEQCLSML   95 (95)
Q Consensus        72 --------------------~~c~yL~A~c~~~l~~~~eal~~L   95 (95)
                                          ..++|..|+|+.+++++++|+.+|
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~L  145 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAIL  145 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence                                158999999999999999999764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.72  E-value=1.9e-07  Score=57.33  Aligned_cols=90  Identities=17%  Similarity=0.062  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      ..+.+...-..+...+.|+.|+-+-++++.++| ++...+.+|.|++..|+|..|+..+++. .+.+.++...+..|.++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            345677777888999999999999999999997 6777888999999999999999988764 23456788899999999


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      ..+|++++|+..
T Consensus        83 ~~~~~~~~A~~~   94 (126)
T 3upv_A           83 IAVKEYASALET   94 (126)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHHhCHHHHHHH
Confidence            999999999864

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.71  E-value=1.8e-07  Score=59.00  Aligned_cols=90  Identities=13%  Similarity=0.154  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      ..+..+..=..+..+++|+.|+-.-++++.++| ++...+.+|.|++..|++..|+..+++. .+.+.++...+..|.|+
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            345556666778899999999999999999997 6677778999999999999999988764 34467788899999999


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      ..+|+|++|+..
T Consensus        92 ~~~~~~~~A~~~  103 (126)
T 4gco_A           92 VAMREWSKAQRA  103 (126)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHCCCHHHHHHH
Confidence            999999999864

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.71  E-value=1.8e-07  Score=59.19  Aligned_cols=91  Identities=15%  Similarity=0.148  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780            4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC   81 (95)
Q Consensus         4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c   81 (95)
                      +..+.+..+-...+..++|+.|+-+.++++..+| ++...+.+|.|++..|+|..|+..+++. .+.+.++...+..|.|
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   95 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            3455666777888999999999999999999997 6777888999999999999999988764 2345678888999999


Q ss_pred             HHHcccHHHHHhc
Q 040780           82 LEELKEWEQCLSM   94 (95)
Q Consensus        82 ~~~l~~~~eal~~   94 (95)
                      +..+|++++|+..
T Consensus        96 ~~~~g~~~~A~~~  108 (142)
T 2xcb_A           96 HLQLGDLDGAESG  108 (142)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHH
Confidence            9999999999864

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.70  E-value=1.6e-07  Score=61.78  Aligned_cols=90  Identities=12%  Similarity=0.088  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      ..+.+..+-..+...+.|+.|+-+-++++.++| +++..+.+|.|++..|+|..|+...++. .+.+.++...|-.|.|+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~  114 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            455566777788899999999999999999997 6777788999999999999999988764 34567888999999999


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      .++|++++|+..
T Consensus       115 ~~lg~~~eA~~~  126 (151)
T 3gyz_A          115 LRLKAPLKAKEC  126 (151)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHH
Confidence            999999999864

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.67  E-value=2.3e-07  Score=54.72  Aligned_cols=89  Identities=13%  Similarity=0.036  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~   83 (95)
                      .+.+......+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45677788889999999999999999999997 6777888999999999999999988764 223457788899999999


Q ss_pred             HcccHHHHHhc
Q 040780           84 ELKEWEQCLSM   94 (95)
Q Consensus        84 ~l~~~~eal~~   94 (95)
                      .+|++++|+..
T Consensus        84 ~~~~~~~A~~~   94 (118)
T 1elw_A           84 FLNRFEEAKRT   94 (118)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HHhhHHHHHHH
Confidence            99999999864

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.65  E-value=3.2e-07  Score=58.97  Aligned_cols=91  Identities=12%  Similarity=0.085  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780            4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC   81 (95)
Q Consensus         4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c   81 (95)
                      +..+.+..+-..+...++|+.|+-+.++++.++| ++...+.+|.|++..|+|..|+..+++. .+.+.+....+..|.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4456777888889999999999999999999997 6777888999999999999999988764 2345678889999999


Q ss_pred             HHHcccHHHHHhc
Q 040780           82 LEELKEWEQCLSM   94 (95)
Q Consensus        82 ~~~l~~~~eal~~   94 (95)
                      +..++++++|+..
T Consensus        89 ~~~~g~~~~A~~~  101 (164)
T 3sz7_A           89 RFDMADYKGAKEA  101 (164)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHccCHHHHHHH
Confidence            9999999999864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.63  E-value=2.7e-07  Score=69.05  Aligned_cols=90  Identities=32%  Similarity=0.495  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~   84 (95)
                      .+..++.++..++.+++|+.|+.+.+++....|++.+.+.++.+++..|++.+|..++++......++...+..+.++.+
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (597)
T 2xpi_A           83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK  162 (597)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence            45678999999999999999999999999888988899999999999999999999999864456788899999999999


Q ss_pred             cccHHHHHhc
Q 040780           85 LKEWEQCLSM   94 (95)
Q Consensus        85 l~~~~eal~~   94 (95)
                      .|++++|+.+
T Consensus       163 ~g~~~~A~~~  172 (597)
T 2xpi_A          163 LYDWQGALNL  172 (597)
T ss_dssp             TTCHHHHHHH
T ss_pred             HhhHHHHHHH
Confidence            9999999875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.62  E-value=4.2e-07  Score=58.64  Aligned_cols=90  Identities=19%  Similarity=0.202  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      ..+.+..+-......+.|+.|+-.-++++..+| +++..+.+|.|++..|+|..|+..+++. .+.+.++...+-.|.|+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            455566777788999999999999999999997 6777788999999999999999988764 23456788889999999


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      ..+|++++|+..
T Consensus       100 ~~~g~~~~A~~~  111 (148)
T 2vgx_A          100 LQXGELAEAESG  111 (148)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHH
Confidence            999999999864

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.61  E-value=4.7e-07  Score=54.70  Aligned_cols=90  Identities=12%  Similarity=0.087  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      ....+..+...+...+.|+.|+-+.++++..++ +++..+.+|.+++..|++..|...+++. ...+.++...+..|.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            456677888889999999999999999999986 6778888999999999999999988763 22345778889999999


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      ..++++++|+..
T Consensus        95 ~~~~~~~~A~~~  106 (133)
T 2lni_A           95 EAMKDYTKAMDV  106 (133)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHHhhHHHHHHH
Confidence            999999999864

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.59  E-value=6.2e-07  Score=54.58  Aligned_cols=85  Identities=9%  Similarity=-0.029  Sum_probs=70.3

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcC-Cc---hhHHHHHHHHhhCCCHHHHHHHHhcC-cccccC---hhhHHHHHHH
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DP---ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRD---LRFRYLAAKC   81 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~---~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~---~~c~yL~A~c   81 (95)
                      -.....++..++|+.|+-..++++...| ++   +..+.+|.+++..|+|..|...+++. ...+.+   +...+..|.|
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            3455677889999999999999999987 44   58889999999999999999887653 122344   6778999999


Q ss_pred             HHHcccHHHHHhc
Q 040780           82 LEELKEWEQCLSM   94 (95)
Q Consensus        82 ~~~l~~~~eal~~   94 (95)
                      +.++|++++|+..
T Consensus        86 ~~~~g~~~~A~~~   98 (129)
T 2xev_A           86 QYGEGKNTEAQQT   98 (129)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHH
Confidence            9999999999864

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.58  E-value=6.8e-07  Score=54.93  Aligned_cols=89  Identities=8%  Similarity=0.104  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~   83 (95)
                      .+.+...-..+...++|+.|+-..++++..+| ++...+.+|.|++..|++..|...+++. .+.+.++...+..|.++.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            45566777888999999999999999999997 5778888999999999999999888764 234567888999999999


Q ss_pred             HcccHHHHHhc
Q 040780           84 ELKEWEQCLSM   94 (95)
Q Consensus        84 ~l~~~~eal~~   94 (95)
                      .+|++++|+..
T Consensus        89 ~~~~~~~A~~~   99 (137)
T 3q49_B           89 EMESYDEAIAN   99 (137)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HHhhHHHHHHH
Confidence            99999999864

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.56  E-value=1.1e-06  Score=52.39  Aligned_cols=90  Identities=16%  Similarity=0.091  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      ....+..+...+...+.|+.|+-+.++++...| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            345666777888899999999999999999986 6677788999999999999999888753 22345678889999999


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      ..++++++|+..
T Consensus        91 ~~~~~~~~A~~~  102 (131)
T 2vyi_A           91 SSLNKHVEAVAY  102 (131)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHhCCHHHHHHH
Confidence            999999999864

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=1e-06  Score=54.27  Aligned_cols=89  Identities=17%  Similarity=0.108  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC----chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTND----PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAK   80 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~----~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~   80 (95)
                      .+.+......+...++|+.|+-+.++++..+|+    +...+.+|.+++..|+|..|...+++. .+.+.++...+..|.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            456777888899999999999999999999886    567788999999999999999888653 233457788899999


Q ss_pred             HHHHcccHHHHHhc
Q 040780           81 CLEELKEWEQCLSM   94 (95)
Q Consensus        81 c~~~l~~~~eal~~   94 (95)
                      ++..++++++|+..
T Consensus       108 ~~~~~~~~~~A~~~  121 (148)
T 2dba_A          108 ALEKLGRLDQAVLD  121 (148)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHH
Confidence            99999999999864

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.51  E-value=1.5e-06  Score=54.49  Aligned_cols=90  Identities=17%  Similarity=0.137  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      ..+.+..+-..+...++|+.|+-+.++++..+| ++...+.+|.+++..|+|..|...+++. .+.+.++...+..|.++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            345666777788889999999999999998886 6677788899999999999998877653 22345677788889999


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      ..+|++++|+..
T Consensus        92 ~~~~~~~~A~~~  103 (166)
T 1a17_A           92 MALGKFRAALRD  103 (166)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHhccHHHHHHH
Confidence            999999998764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.50  E-value=7.5e-07  Score=55.61  Aligned_cols=84  Identities=10%  Similarity=-0.077  Sum_probs=73.2

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      ......+..++++.|+-..++++..+| +++..+.+|.++...|++..|+..+++. .+.+.++...+..|.++..+|++
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~  101 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  101 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            445667889999999999999999997 7788889999999999999999988764 34456788889999999999999


Q ss_pred             HHHHhc
Q 040780           89 EQCLSM   94 (95)
Q Consensus        89 ~eal~~   94 (95)
                      ++|+..
T Consensus       102 ~~A~~~  107 (121)
T 1hxi_A          102 NAALAS  107 (121)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.48  E-value=1.4e-06  Score=52.13  Aligned_cols=90  Identities=13%  Similarity=0.138  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccC-------hhhH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRD-------LRFR   75 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~-------~~c~   75 (95)
                      ..+.+..+...+...+.|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++.- +.+.+       ....
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            345567777888999999999999999999986 66677889999999999999998887531 11222       6678


Q ss_pred             HHHHHHHHHcccHHHHHhc
Q 040780           76 YLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        76 yL~A~c~~~l~~~~eal~~   94 (95)
                      +..|.++..+|++++|+..
T Consensus        83 ~~la~~~~~~~~~~~A~~~  101 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHF  101 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHH
Confidence            8899999999999999864

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.45  E-value=7.1e-07  Score=52.23  Aligned_cols=84  Identities=14%  Similarity=0.052  Sum_probs=70.9

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-ccccc--ChhhHHHHHHHHHHc-
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLR--DLRFRYLAAKCLEEL-   85 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~--~~~c~yL~A~c~~~l-   85 (95)
                      .+...+...++|+.|+-+.++++..++ ++...+.+|.+++..|++..|...+++. ...+.  +....+..|.++.++ 
T Consensus        11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~   90 (112)
T 2kck_A           11 LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIE   90 (112)
T ss_dssp             GHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence            345567789999999999999999996 5667788999999999999999988764 22345  678889999999999 


Q ss_pred             ccHHHHHhc
Q 040780           86 KEWEQCLSM   94 (95)
Q Consensus        86 ~~~~eal~~   94 (95)
                      |++++|+..
T Consensus        91 ~~~~~A~~~   99 (112)
T 2kck_A           91 GKEVEAEIA   99 (112)
T ss_dssp             SCSHHHHHH
T ss_pred             CCHHHHHHH
Confidence            999999874

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.41  E-value=1.2e-06  Score=58.80  Aligned_cols=89  Identities=15%  Similarity=0.132  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHH----------------HHHHHhhCCCHHHHHHHHhcC-cc
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYM----------------QAQALFLGRHYRRAFHLLNAS-KI   67 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~l----------------lA~~l~~~~~~~~A~~ll~~~-~l   67 (95)
                      ++.+-......+..++|+.|+-+.++++.++| +++..++                +|.+++..|+|..|+..+++. .+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34445555667889999999999999999997 5667778                999999999999999888764 23


Q ss_pred             cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           68 VLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        68 ~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+.++...+..|.++...|++++|+..
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~  110 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRM  110 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            456788889999999999999999864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.39  E-value=5.3e-06  Score=49.00  Aligned_cols=89  Identities=12%  Similarity=0.179  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~   83 (95)
                      ...+..+...+...++++.|+-+.+++....| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            34556677788899999999999999999886 5667788999999999999999888753 122456677788999999


Q ss_pred             HcccHHHHHhc
Q 040780           84 ELKEWEQCLSM   94 (95)
Q Consensus        84 ~l~~~~eal~~   94 (95)
                      ..+++++|+..
T Consensus        89 ~~~~~~~A~~~   99 (125)
T 1na0_A           89 KQGDYDEAIEY   99 (125)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HhcCHHHHHHH
Confidence            99999999864

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.38  E-value=1.2e-06  Score=51.89  Aligned_cols=88  Identities=15%  Similarity=0.178  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccC------hhhHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRD------LRFRYL   77 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~------~~c~yL   77 (95)
                      .+.+..+-..+...++|+.|+-+.++++.++| ++...+.+|.|++..|+|..|...+++. .+.+.+      ....+.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            34566677788899999999999999999997 6778889999999999999999988764 233344      667788


Q ss_pred             HHHHHHHcccHHHHHh
Q 040780           78 AAKCLEELKEWEQCLS   93 (95)
Q Consensus        78 ~A~c~~~l~~~~eal~   93 (95)
                      .|.+...+|++++|+.
T Consensus        84 ~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHhHhhhHh
Confidence            8999999888877664

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.38  E-value=5e-06  Score=54.82  Aligned_cols=90  Identities=11%  Similarity=0.000  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-Cc----------------hhHHHHHHHHhhCCCHHHHHHHHhcC-c
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DP----------------ADVYMQAQALFLGRHYRRAFHLLNAS-K   66 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~----------------~~~~llA~~l~~~~~~~~A~~ll~~~-~   66 (95)
                      ..+.+...-..+...+.|+.|+-+-++++.+.+ ++                ...+.+|.|++..|+|..|+..+++. .
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            455667777888899999999999999999886 44                56677899999999999998887753 2


Q ss_pred             ccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           67 IVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        67 l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +.+.+....+..|.++..+++|++|+..
T Consensus       117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~  144 (198)
T 2fbn_A          117 IDKNNVKALYKLGVANMYFGFLEEAKEN  144 (198)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence            3356778889999999999999999864

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.35  E-value=2e-06  Score=55.09  Aligned_cols=90  Identities=12%  Similarity=-0.044  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhh------------------cC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAAL------------------TN-DPADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~------------------~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      ..+.++..-..+...+.|+.|+-.-++.+.+                  ++ .+...+-+|.|++..|+|..|+..+++.
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4566777778889999999999999999988                  22 2235566799999999999998877653


Q ss_pred             -cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           66 -KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        66 -~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                       .+.+.++...|..|.++..+|+|++|+..
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~  119 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEED  119 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHH
Confidence             23466788899999999999999999864

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.35  E-value=3.4e-07  Score=56.14  Aligned_cols=76  Identities=20%  Similarity=0.137  Sum_probs=55.9

Q ss_pred             hCChhhHHHHHHHHhhh---cC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           19 KHLYSSAIFFADKVAAL---TN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~---~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      .++|+.|+-+-++++.+   +| ++...+.+|.+++..|+|..|+..+++. .+.+.++...+..|.|+..+|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            57788888888888888   33 4566778888888888888888877653 2334567788888888888888888876


Q ss_pred             c
Q 040780           94 M   94 (95)
Q Consensus        94 ~   94 (95)
                      .
T Consensus        83 ~   83 (117)
T 3k9i_A           83 L   83 (117)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.32  E-value=4.1e-06  Score=60.99  Aligned_cols=92  Identities=11%  Similarity=0.082  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC   81 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c   81 (95)
                      .+..+.+...-..+...++|+.|+-+-++++..+|++...+.+|.|++..|++..|...+++. .+.+.++...+..|.+
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~   82 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence            456677888888999999999999999999999998888999999999999999999988763 2345677889999999


Q ss_pred             HHHcccHHHHHhc
Q 040780           82 LEELKEWEQCLSM   94 (95)
Q Consensus        82 ~~~l~~~~eal~~   94 (95)
                      +.++|++++|+..
T Consensus        83 ~~~~g~~~~A~~~   95 (514)
T 2gw1_A           83 NEGLGKFADAMFD   95 (514)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHHhhHHHHHHH
Confidence            9999999999864

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.30  E-value=7.8e-06  Score=52.69  Aligned_cols=84  Identities=11%  Similarity=-0.070  Sum_probs=67.3

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      .........++++.|+-..+++..++| +++..+.+|.+++..|+|..|+..+++. .+.+.++...+-.|.++.++|++
T Consensus        78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence            344556778888999999999888886 6777888899999999999998887754 23456777888889999999999


Q ss_pred             HHHHhc
Q 040780           89 EQCLSM   94 (95)
Q Consensus        89 ~eal~~   94 (95)
                      ++|+..
T Consensus       158 ~~A~~~  163 (184)
T 3vtx_A          158 DEAVKY  163 (184)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.27  E-value=1.1e-05  Score=47.83  Aligned_cols=85  Identities=13%  Similarity=0.185  Sum_probs=60.9

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHccc
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKE   87 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~   87 (95)
                      ..+..-+...++++.|+-+.+++....+ ++...+.+|.+++..|++..|...+++. ...+..+...+..|.++...|+
T Consensus        39 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  118 (136)
T 2fo7_A           39 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD  118 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc
Confidence            3445556677888888888888887775 4556667788888888888888777653 1223456667777888888888


Q ss_pred             HHHHHhc
Q 040780           88 WEQCLSM   94 (95)
Q Consensus        88 ~~eal~~   94 (95)
                      +++|+..
T Consensus       119 ~~~A~~~  125 (136)
T 2fo7_A          119 YDEAIEY  125 (136)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888754

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.27  E-value=2.1e-06  Score=55.19  Aligned_cols=82  Identities=11%  Similarity=0.001  Sum_probs=69.2

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHH
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWE   89 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~   89 (95)
                      +-.-+...++|+.|+-+-++++.++| +++..+.+|.+++..|++..|+..+++. .+.+.++...+-.|.++.+.++++
T Consensus        37 la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  116 (150)
T 4ga2_A           37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD  116 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence            34557889999999999999999997 6778888999999999999999988764 344677888888999999999987


Q ss_pred             HHHh
Q 040780           90 QCLS   93 (95)
Q Consensus        90 eal~   93 (95)
                      ||+.
T Consensus       117 ~aa~  120 (150)
T 4ga2_A          117 GRAK  120 (150)
T ss_dssp             SHHH
T ss_pred             HHHH
Confidence            7653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.27  E-value=5.6e-06  Score=57.16  Aligned_cols=89  Identities=10%  Similarity=0.015  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~   83 (95)
                      ++.+..+...++..++|+.|+-..++++..+| +++..+.+|.+++..|++..|...+++. .+.+.++...+..|.++.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            45667778889999999999999999999997 6788889999999999999999988764 223457788999999999


Q ss_pred             HcccHHHHHhc
Q 040780           84 ELKEWEQCLSM   94 (95)
Q Consensus        84 ~l~~~~eal~~   94 (95)
                      ..|++++|+..
T Consensus        83 ~~~~~~~A~~~   93 (359)
T 3ieg_A           83 KQGKLDEAEDD   93 (359)
T ss_dssp             HHTCHHHHHHH
T ss_pred             HcCChHHHHHH
Confidence            99999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.27  E-value=9.4e-06  Score=57.14  Aligned_cols=88  Identities=8%  Similarity=0.108  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~   84 (95)
                      +.+...-..+...++|+.|+-..++++..+| ++...+.+|.|++..|+|..|...+++. .+.+.+....+..|.++..
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4566777788899999999999999999997 6777788999999999999999988764 3456678889999999999


Q ss_pred             cccHHHHHhc
Q 040780           85 LKEWEQCLSM   94 (95)
Q Consensus        85 l~~~~eal~~   94 (95)
                      +|+|++|+..
T Consensus        85 ~g~~~~A~~~   94 (281)
T 2c2l_A           85 MESYDEAIAN   94 (281)
T ss_dssp             TTCHHHHHHH
T ss_pred             cCCHHHHHHH
Confidence            9999999864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.26  E-value=7.7e-06  Score=54.55  Aligned_cols=88  Identities=15%  Similarity=0.129  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC--CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN--DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~--~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~   83 (95)
                      +.+...-..+...++|+.|+-+-++++.++|  ++...+.+|.|++..|+|..|+..+++. .+.+.++...+..|.++.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            4455666778899999999999999999994  6677888999999999999999988764 234567788899999999


Q ss_pred             HcccHHHHHhc
Q 040780           84 ELKEWEQCLSM   94 (95)
Q Consensus        84 ~l~~~~eal~~   94 (95)
                      .+|++++|+..
T Consensus        88 ~~~~~~~A~~~   98 (228)
T 4i17_A           88 DMKNNQEYIAT   98 (228)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HcccHHHHHHH
Confidence            99999999874

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.24  E-value=1.2e-05  Score=53.92  Aligned_cols=89  Identities=10%  Similarity=-0.145  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~   83 (95)
                      ..-+..+..-+...++|+.|+-+.++++..+| +++..+.+|.+++..|++..|...+++. .+.+.++...+..|.++.
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  122 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  122 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence            44556667778889999999999999999987 5677788999999999999999988764 123456778888999999


Q ss_pred             HcccHHHHHhc
Q 040780           84 ELKEWEQCLSM   94 (95)
Q Consensus        84 ~l~~~~eal~~   94 (95)
                      .+|++++|+..
T Consensus       123 ~~g~~~~A~~~  133 (275)
T 1xnf_A          123 YGGRDKLAQDD  133 (275)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HhccHHHHHHH
Confidence            99999999864

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.22  E-value=1.3e-05  Score=47.59  Aligned_cols=86  Identities=13%  Similarity=0.180  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +..+...+...+.++.|+-+.+++...++ ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++...|
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG   83 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence            34556677889999999999999999886 5667778899999999999999988753 122345667788899999999


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      ++++|+..
T Consensus        84 ~~~~A~~~   91 (136)
T 2fo7_A           84 DYDEAIEY   91 (136)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.21  E-value=8.7e-06  Score=54.91  Aligned_cols=86  Identities=16%  Similarity=0.061  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc-
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL-   85 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l-   85 (95)
                      +..+-......++++.|+-..++++..+| +++..+.+|.++...|++..|...+++. .+.+.++...+..|.++.+. 
T Consensus         8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~   87 (217)
T 2pl2_A            8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALY   87 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Confidence            44555667889999999999999999997 7888899999999999999999988764 23456788899999999999 


Q ss_pred             ----------ccHHHHHhc
Q 040780           86 ----------KEWEQCLSM   94 (95)
Q Consensus        86 ----------~~~~eal~~   94 (95)
                                |++++|+..
T Consensus        88 ~~~~~~~~~~g~~~~A~~~  106 (217)
T 2pl2_A           88 RQAEDRERGKGYLEQALSV  106 (217)
T ss_dssp             HTCSSHHHHHHHHHHHHHH
T ss_pred             hhhhhhcccccCHHHHHHH
Confidence                      999999864

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.21  E-value=1.4e-05  Score=50.06  Aligned_cols=47  Identities=13%  Similarity=0.035  Sum_probs=19.1

Q ss_pred             HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHH
Q 040780           16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLL   62 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll   62 (95)
                      +...+.++.|+-+.+++...+| ++...+.+|.+++..|++..|...+
T Consensus        52 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   99 (186)
T 3as5_A           52 YVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLL   99 (186)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3344444444444444444433 2223333344444444444444433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.16  E-value=2.5e-05  Score=48.92  Aligned_cols=86  Identities=15%  Similarity=0.052  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +..+..-+...++++.|+-+.+++....| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++.+.|
T Consensus        79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  158 (186)
T 3as5_A           79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG  158 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence            44456667889999999999999999986 6677788999999999999999988763 223456788899999999999


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      ++++|+..
T Consensus       159 ~~~~A~~~  166 (186)
T 3as5_A          159 RHEEALPH  166 (186)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999864

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.15  E-value=2.3e-05  Score=51.83  Aligned_cols=90  Identities=14%  Similarity=0.076  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccC-------hhhHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRD-------LRFRY   76 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~-------~~c~y   76 (95)
                      ..+.+..+-..+...++|+.|+-+.++++..++++...+.+|.+++..|++..|...+++.- +.+..       +...+
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            45667888888999999999999999999988777888999999999999999999887631 11222       57788


Q ss_pred             HHHHHHHHcccHHHHHhc
Q 040780           77 LAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        77 L~A~c~~~l~~~~eal~~   94 (95)
                      ..|.++..++++++|+..
T Consensus        84 ~l~~~~~~~~~~~~A~~~  101 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEY  101 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHH
Confidence            999999999999999864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.15  E-value=2.9e-05  Score=48.47  Aligned_cols=87  Identities=8%  Similarity=0.078  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccC-------hhhHHHH
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRD-------LRFRYLA   78 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~-------~~c~yL~   78 (95)
                      ..+.+=..+..+++|+.|+-+-++++.++| ++...+-+|.|++..|+|..|+..+++.- +.+.+       ..+.+-.
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            445555678889999999999999999998 45566678999999999999998776531 11111       1245567


Q ss_pred             HHHHHHcccHHHHHhc
Q 040780           79 AKCLEELKEWEQCLSM   94 (95)
Q Consensus        79 A~c~~~l~~~~eal~~   94 (95)
                      |.++.++++|++|+..
T Consensus        90 g~~~~~~~~~~~A~~~  105 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQW  105 (127)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            8899999999999863

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.14  E-value=1.6e-05  Score=51.11  Aligned_cols=87  Identities=8%  Similarity=0.058  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHH-HhhCCCH--HHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQA-LFLGRHY--RRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~-l~~~~~~--~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      -+..+-.-+...++|+.|+-+.++++.++| ++...+.+|.+ ++..|++  ..|...+++. ...+.++...+..|.++
T Consensus        46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  125 (177)
T 2e2e_A           46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDA  125 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            345566677889999999999999999997 67777888999 7799999  9998888753 22356678889999999


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      ...|++++|+..
T Consensus       126 ~~~g~~~~A~~~  137 (177)
T 2e2e_A          126 FMQANYAQAIEL  137 (177)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHcccHHHHHHH
Confidence            999999999864

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.14  E-value=2e-05  Score=50.66  Aligned_cols=83  Identities=11%  Similarity=-0.027  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      .-.+=.-+..+++|+.|+-+-++++.++| +++..+.+|.+++..|++..|...+++. ...+.++...+..|.++...+
T Consensus         8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (184)
T 3vtx_A            8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMID   87 (184)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcC
Confidence            33444556778888888888888888886 6667777888888888888887766542 111223333334444444444


Q ss_pred             cHHHH
Q 040780           87 EWEQC   91 (95)
Q Consensus        87 ~~~ea   91 (95)
                      +++++
T Consensus        88 ~~~~a   92 (184)
T 3vtx_A           88 EKQAA   92 (184)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            44433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.13  E-value=9.7e-06  Score=59.58  Aligned_cols=90  Identities=10%  Similarity=0.069  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      ..+.+...-..+...++|+.|+-+-++++..+| ++...+.+|.|++..|++..|...+++. .+.+.++...+..|.++
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            456778888899999999999999999999997 7778888999999999999999988764 23456788899999999


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      ..+|++++|+..
T Consensus       104 ~~~g~~~~A~~~  115 (537)
T 3fp2_A          104 ESLGNFTDAMFD  115 (537)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHH
Confidence            999999999864

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.12  E-value=3.2e-05  Score=51.13  Aligned_cols=87  Identities=16%  Similarity=0.049  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      -+..+..-+...+.|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++.++
T Consensus       141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  220 (258)
T 3uq3_A          141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV  220 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            344556667889999999999999999997 6777888999999999999999988764 22345677888899999999


Q ss_pred             ccHHHHHhc
Q 040780           86 KEWEQCLSM   94 (95)
Q Consensus        86 ~~~~eal~~   94 (95)
                      |++++|+..
T Consensus       221 g~~~~A~~~  229 (258)
T 3uq3_A          221 KEYASALET  229 (258)
T ss_dssp             TCHHHHHHH
T ss_pred             hhHHHHHHH
Confidence            999999864

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.12  E-value=3.1e-05  Score=50.18  Aligned_cols=80  Identities=4%  Similarity=-0.133  Sum_probs=38.5

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhC-CCHHHHHHHHhcCc---ccccChhhHHHHHHHHHHcccH
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLG-RHYRRAFHLLNASK---IVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~-~~~~~A~~ll~~~~---l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      .-+...+.++.|+-+.++++..+| ++...+.+|.+++.. |++..|...+++.-   .........+..|.++.+.|++
T Consensus        50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  129 (225)
T 2vq2_A           50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF  129 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence            334445555555555555555553 333444455555555 55555555444321   1111234445555555555555


Q ss_pred             HHHHh
Q 040780           89 EQCLS   93 (95)
Q Consensus        89 ~eal~   93 (95)
                      ++|+.
T Consensus       130 ~~A~~  134 (225)
T 2vq2_A          130 GLAEA  134 (225)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.11  E-value=1.3e-05  Score=53.96  Aligned_cols=79  Identities=13%  Similarity=0.055  Sum_probs=40.9

Q ss_pred             HHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhC-----------CCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780           15 DCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLG-----------RHYRRAFHLLNAS-KIVLRDLRFRYLAAKC   81 (95)
Q Consensus        15 ~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~-----------~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c   81 (95)
                      -+...+.++.|+-..++++.++| +++..+.+|.++...           |++.+|...+++. .+.+.++...+..|.+
T Consensus        48 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~  127 (217)
T 2pl2_A           48 TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV  127 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            34455555555555555555554 344445555555555           5555555554432 1223344445555555


Q ss_pred             HHHcccHHHHHh
Q 040780           82 LEELKEWEQCLS   93 (95)
Q Consensus        82 ~~~l~~~~eal~   93 (95)
                      +..+|++++|+.
T Consensus       128 ~~~~g~~~~A~~  139 (217)
T 2pl2_A          128 YALLGERDKAEA  139 (217)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHHcCChHHHHH
Confidence            555555555543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.10  E-value=2.3e-05  Score=53.43  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-C---chhHHHHHHHHhhCCCHHHHHHHHhcC----cccccChhhHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-D---PADVYMQAQALFLGRHYRRAFHLLNAS----KIVLRDLRFRYL   77 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~---~~~~~llA~~l~~~~~~~~A~~ll~~~----~l~~~~~~c~yL   77 (95)
                      .+.+-..-..++..++|+.|+-+-++++...| +   ++..+.+|.|++..|+|..|+..+++.    +-....+...|.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            44566677788999999999999999999987 4   567899999999999999999988763    111233567889


Q ss_pred             HHHHHHH--------cccHHHHHhc
Q 040780           78 AAKCLEE--------LKEWEQCLSM   94 (95)
Q Consensus        78 ~A~c~~~--------l~~~~eal~~   94 (95)
                      .|.|++.        .|++++|+..
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHH
Confidence            9999999        9999999864

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.10  E-value=3.4e-05  Score=51.49  Aligned_cols=87  Identities=11%  Similarity=-0.046  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~   84 (95)
                      +.+..+...+...++++.|+-+.++++..++ ++...+.+|.+++..|++..|...+++. ...+.+....+..|.++..
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  117 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE  117 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence            3444555556666666666666666666664 4455556666666666666666655542 1122344555556666666


Q ss_pred             cccHHHHHh
Q 040780           85 LKEWEQCLS   93 (95)
Q Consensus        85 l~~~~eal~   93 (95)
                      .|++++|+.
T Consensus       118 ~g~~~~A~~  126 (252)
T 2ho1_A          118 QKRYEEAYQ  126 (252)
T ss_dssp             TTCHHHHHH
T ss_pred             HhHHHHHHH
Confidence            666666654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.09  E-value=2.9e-05  Score=50.79  Aligned_cols=86  Identities=10%  Similarity=0.018  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-----------------cccc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-----------------IVLR   70 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-----------------l~~~   70 (95)
                      +..+..-+...++|+.|+-+.++++.++| ++...+.+|.+++..|+|..|+..+++.-                 ....
T Consensus        40 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  119 (213)
T 1hh8_A           40 CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF  119 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEE
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCcc
Confidence            34445556778888888888888888875 55666777888888888888877765431                 1112


Q ss_pred             ChhhHHHHHHHHHHcccHHHHHhc
Q 040780           71 DLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        71 ~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .....+..|.++.++|++++|+..
T Consensus       120 ~~~~~~~l~~~~~~~g~~~~A~~~  143 (213)
T 1hh8_A          120 ACEVLYNIAFMYAKKEEWKKAEEQ  143 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHccCHHHHHHH
Confidence            336677788888888888888753

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.09  E-value=3.4e-05  Score=55.72  Aligned_cols=86  Identities=9%  Similarity=0.018  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc----------------hhHHHHHHHHhhCCCHHHHHHHHhcC-ccccc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTNDP----------------ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLR   70 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~----------------~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~   70 (95)
                      .+..+-..+...++|+.|+-.-++++.+.|+.                ...+.+|.|++..|+|..|+..+++. .+.+.
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  228 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN  228 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34445555566667777777777776666532                45555677777777777776665543 12334


Q ss_pred             ChhhHHHHHHHHHHcccHHHHHh
Q 040780           71 DLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        71 ~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      ++...+..|.++..+++|++|+.
T Consensus       229 ~~~a~~~lg~~~~~~g~~~~A~~  251 (336)
T 1p5q_A          229 NEKGLSRRGEAHLAVNDFELARA  251 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHH
Confidence            55666666677777777766654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.09  E-value=2.5e-05  Score=51.16  Aligned_cols=85  Identities=7%  Similarity=-0.070  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      .+...-..+...+.|+.|+-..+++.  .+++...+.+|.+++..|+|..|+..+++. .+.+.++...+..|.++..+|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence            44556677889999999999999984  567788899999999999999999988764 233567788889999999999


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      ++++|+..
T Consensus        86 ~~~~A~~~   93 (213)
T 1hh8_A           86 KYDLAIKD   93 (213)
T ss_dssp             CHHHHHHH
T ss_pred             cHHHHHHH
Confidence            99999864

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.06  E-value=4.9e-05  Score=47.33  Aligned_cols=86  Identities=15%  Similarity=0.154  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH--HHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC--LEE   84 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c--~~~   84 (95)
                      +..+..-+...++|+.|+-+.++++.++| ++...+.+|.+++..|++..|...+++. .+.+.+.......+.+  ..+
T Consensus        50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~  129 (166)
T 1a17_A           50 YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  129 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            44455667889999999999999999997 6778889999999999999999988764 1223455555455555  778


Q ss_pred             cccHHHHHhc
Q 040780           85 LKEWEQCLSM   94 (95)
Q Consensus        85 l~~~~eal~~   94 (95)
                      .+++++|+..
T Consensus       130 ~~~~~~A~~~  139 (166)
T 1a17_A          130 QKAFERAIAG  139 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            8999999864

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.05  E-value=2.7e-05  Score=52.42  Aligned_cols=83  Identities=13%  Similarity=-0.037  Sum_probs=47.0

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccC----hhhHHHHHHHHHHc
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRD----LRFRYLAAKCLEEL   85 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~----~~c~yL~A~c~~~l   85 (95)
                      .....+...++|+.|+-..++++..+| +++..+.+|.+++..|+|..|...+++.--...+    ..+.+..|.++...
T Consensus         8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~   87 (272)
T 3u4t_A            8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK   87 (272)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence            334455566666666666666666664 4556666666666666666666655542111111    22345566666666


Q ss_pred             ccHHHHHh
Q 040780           86 KEWEQCLS   93 (95)
Q Consensus        86 ~~~~eal~   93 (95)
                      |++++|+.
T Consensus        88 ~~~~~A~~   95 (272)
T 3u4t_A           88 GQDSLAIQ   95 (272)
T ss_dssp             TCHHHHHH
T ss_pred             ccHHHHHH
Confidence            66666654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.04  E-value=2.4e-05  Score=57.73  Aligned_cols=89  Identities=19%  Similarity=0.138  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhh----------------hcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cc
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAA----------------LTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KI   67 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a----------------~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l   67 (95)
                      .+.+..+-..+...++|+.|+-.-++++.                +++ .+...+.+|.|++..|+|..|+..+++. .+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            33455556666677777777777777766                332 3345556677777777777777666543 22


Q ss_pred             cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           68 VLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        68 ~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+.+....|..|.++..+++|++|+..
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~  329 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALAD  329 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHH
Confidence            344566667777777777777777653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.04  E-value=5.2e-05  Score=49.93  Aligned_cols=80  Identities=16%  Similarity=0.214  Sum_probs=35.8

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ   90 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e   90 (95)
                      ..-+...++++.|+-..+++....+ ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++...|++++
T Consensus        64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  143 (243)
T 2q7f_A           64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKL  143 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence            3334444555555555555544443 3333344455555555555554444332 1112233444444455555555544


Q ss_pred             HH
Q 040780           91 CL   92 (95)
Q Consensus        91 al   92 (95)
                      |+
T Consensus       144 A~  145 (243)
T 2q7f_A          144 AL  145 (243)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.04  E-value=3.4e-05  Score=50.83  Aligned_cols=85  Identities=20%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHccc
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKE   87 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~   87 (95)
                      ..+..-+...++++.|+-+.+++....+ +++..+.+|.+++..|++..|...+++. ...+.++...+..|.++.+.|+
T Consensus        95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  174 (243)
T 2q7f_A           95 YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM  174 (243)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC
Confidence            3344555666777777777777777665 4555566677777777777776666542 1123445566666667777777


Q ss_pred             HHHHHhc
Q 040780           88 WEQCLSM   94 (95)
Q Consensus        88 ~~eal~~   94 (95)
                      +++|+..
T Consensus       175 ~~~A~~~  181 (243)
T 2q7f_A          175 LDEALSQ  181 (243)
T ss_dssp             CHHHHHH
T ss_pred             HHHHHHH
Confidence            6666543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.02  E-value=4.9e-05  Score=54.72  Aligned_cols=90  Identities=10%  Similarity=0.032  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      ..+.+..+...+...++|+.|+-+-++++..+| ++...+.+|.+++..|++..|...+++. .+.+.+....+..|.++
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  104 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL  104 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            345677788889999999999999999999986 6778888999999999999999988763 12345677888899999


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      .++|++++|+..
T Consensus       105 ~~~g~~~~A~~~  116 (450)
T 2y4t_A          105 LKQGKLDEAEDD  116 (450)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHH
Confidence            999999999864

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.02  E-value=3.6e-05  Score=54.27  Aligned_cols=86  Identities=8%  Similarity=-0.026  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +-.....+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. .+.+.++...+..|.++..+|
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  147 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS  147 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence            44556778889999999999999999997 6778889999999999999999988764 233566788899999999999


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      ++++|+..
T Consensus       148 ~~~~A~~~  155 (365)
T 4eqf_A          148 HQQDACEA  155 (365)
T ss_dssp             CHHHHHHH
T ss_pred             cHHHHHHH
Confidence            99999864

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.01  E-value=6e-05  Score=51.56  Aligned_cols=78  Identities=10%  Similarity=0.083  Sum_probs=37.5

Q ss_pred             HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCC-CHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780           16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGR-HYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL   92 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~-~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal   92 (95)
                      ....++++.|+-+.+++...+| ++...+.+|.+++..| ++..|...+++. .+.+.++...+..|.++...|++++|+
T Consensus        66 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  145 (330)
T 3hym_B           66 LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAM  145 (330)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHH
Confidence            3444555555555555555543 3444445555555555 555555544432 112233444445555555555555554


Q ss_pred             h
Q 040780           93 S   93 (95)
Q Consensus        93 ~   93 (95)
                      .
T Consensus       146 ~  146 (330)
T 3hym_B          146 A  146 (330)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.00  E-value=4.4e-05  Score=53.41  Aligned_cols=86  Identities=6%  Similarity=-0.114  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +-.+...+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. .+.+.++...+..|.++...|
T Consensus        67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  146 (368)
T 1fch_A           67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  146 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence            33556677889999999999999999986 6778888999999999999999988764 233457788889999999999


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      ++++|+..
T Consensus       147 ~~~~A~~~  154 (368)
T 1fch_A          147 LQRQACEI  154 (368)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999864

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.99  E-value=8.9e-05  Score=50.70  Aligned_cols=86  Identities=10%  Similarity=-0.050  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +..+..-+...++++.|+-..+++....| ++...+.+|.++...|++..|...+++. ...+.++...+..|.++...|
T Consensus       128 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  207 (330)
T 3hym_B          128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG  207 (330)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence            34455556677777777777777777775 4566667777777777777777776653 223455666777777888888


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      ++++|+..
T Consensus       208 ~~~~A~~~  215 (330)
T 3hym_B          208 EWKTAEKW  215 (330)
T ss_dssp             CHHHHHHH
T ss_pred             cHHHHHHH
Confidence            88777653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.99  E-value=4.9e-06  Score=53.41  Aligned_cols=77  Identities=12%  Similarity=0.059  Sum_probs=64.5

Q ss_pred             HhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           18 SKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        18 ~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .++.++.|+-..++....+| ++...|.+|.+|+..|+|..|+..+++. .+.+.++...+..|.|+.++|++++|+..
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~   87 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC   87 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence            35667888888888877775 5667789999999999999999988764 34567888999999999999999999864

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.99  E-value=5.7e-05  Score=52.83  Aligned_cols=87  Identities=13%  Similarity=-0.004  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      -+..+..-+...++++.|+-+.++++.++| ++...+.+|.++...|++..|...+++. .+.+.++...+..|.++.++
T Consensus       219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL  298 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            345566677788999999999999998886 5677788899999999999998888763 22345677888889999999


Q ss_pred             ccHHHHHhc
Q 040780           86 KEWEQCLSM   94 (95)
Q Consensus        86 ~~~~eal~~   94 (95)
                      |++++|+..
T Consensus       299 g~~~~A~~~  307 (368)
T 1fch_A          299 GAHREAVEH  307 (368)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            999998764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.98  E-value=6.9e-05  Score=51.18  Aligned_cols=87  Identities=15%  Similarity=0.062  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      -+..+..-+...++++.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++.++
T Consensus       174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  253 (327)
T 3cv0_A          174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM  253 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            344556667889999999999999999986 5667788899999999999999888763 22345677888899999999


Q ss_pred             ccHHHHHhc
Q 040780           86 KEWEQCLSM   94 (95)
Q Consensus        86 ~~~~eal~~   94 (95)
                      |++++|+..
T Consensus       254 g~~~~A~~~  262 (327)
T 3cv0_A          254 SQYDLAAKQ  262 (327)
T ss_dssp             TCHHHHHHH
T ss_pred             ccHHHHHHH
Confidence            999999864

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.97  E-value=0.0001  Score=50.71  Aligned_cols=83  Identities=23%  Similarity=0.221  Sum_probs=72.1

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHH
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWE   89 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~   89 (95)
                      ....+...++++.|+-+-+++....| +++..+.+|.++...|++..|...+++. ...+.++...+..|.++...|+++
T Consensus       126 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  205 (359)
T 3ieg_A          126 QALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE  205 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            35778899999999999999999997 6777888999999999999999988764 234567888999999999999999


Q ss_pred             HHHhc
Q 040780           90 QCLSM   94 (95)
Q Consensus        90 eal~~   94 (95)
                      +|+..
T Consensus       206 ~A~~~  210 (359)
T 3ieg_A          206 LSLSE  210 (359)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.97  E-value=6.5e-05  Score=50.52  Aligned_cols=84  Identities=8%  Similarity=-0.079  Sum_probs=58.9

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcCCchh----HHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTNDPAD----VYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~----~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      .+..-+...++|+.|+-+.++++...++++.    .+.+|.++...|++..|+..+++. ...+.++...+..|.++...
T Consensus        42 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  121 (272)
T 3u4t_A           42 RRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK  121 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence            3444567778888888888888774333333    577888888888888888777653 12344566777788888888


Q ss_pred             ccHHHHHhc
Q 040780           86 KEWEQCLSM   94 (95)
Q Consensus        86 ~~~~eal~~   94 (95)
                      |++++|+..
T Consensus       122 ~~~~~A~~~  130 (272)
T 3u4t_A          122 GNFPLAIQY  130 (272)
T ss_dssp             TCHHHHHHH
T ss_pred             cCHHHHHHH
Confidence            888888754

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.97  E-value=4.4e-05  Score=53.50  Aligned_cols=80  Identities=21%  Similarity=0.397  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      +..-|..|+.--.|+||+|++--+.+  ..++--.+++.++|.+|+|.||.-++.+-    ...-..|-.+.|+.++++|
T Consensus         5 ~~~kI~Ks~kY~dYdt~~fLsa~L~~--~~~eY~lL~~I~LyyngEY~R~Lf~L~~l----NT~Ts~YYk~LCy~klKdY   78 (242)
T 3kae_A            5 LIGKICKSIRYRDYETAIFLAACLLP--CKPEYRMLMSIVLYLNGEYTRALFHLHKL----NTCTSKYYESLCYKKKKDY   78 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC------CTHHHHHHHHHHTTCHHHHHHHHHTC----CBHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhhcccccHHHHHHHHHcc--CChHHHhhhhhhhhhcchHhHHHHHHHhc----chHHHHHHHHHHHHHHHHH
Confidence            45567788889999999999977654  35588899999999999999999999884    3456778899999999999


Q ss_pred             HHHHhc
Q 040780           89 EQCLSM   94 (95)
Q Consensus        89 ~eal~~   94 (95)
                      ..|+..
T Consensus        79 kkA~~~   84 (242)
T 3kae_A           79 KKAIKS   84 (242)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.96  E-value=0.00011  Score=48.88  Aligned_cols=83  Identities=14%  Similarity=0.091  Sum_probs=45.1

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      .+..-+...++++.|+-+.++++...| ++...+.+|.+++..|++..|...+++. ...+.+....+..+.++.+.|++
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  225 (252)
T 2ho1_A          146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR  225 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCH
Confidence            334445555666666666666665554 3445555566666666666665555442 11223444555556666666666


Q ss_pred             HHHHh
Q 040780           89 EQCLS   93 (95)
Q Consensus        89 ~eal~   93 (95)
                      ++|+.
T Consensus       226 ~~A~~  230 (252)
T 2ho1_A          226 DTAAS  230 (252)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.95  E-value=6.6e-05  Score=56.48  Aligned_cols=89  Identities=12%  Similarity=0.056  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc----------------hhHHHHHHHHhhCCCHHHHHHHHhcC-ccc
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDP----------------ADVYMQAQALFLGRHYRRAFHLLNAS-KIV   68 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~----------------~~~~llA~~l~~~~~~~~A~~ll~~~-~l~   68 (95)
                      ...++..-..+...++|+.|+-.-++++.+.++.                ...+.+|.|++..|+|..|+..+++. .+.
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            3455566667777888888888888888887643                45566788888888888888777653 233


Q ss_pred             ccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           69 LRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        69 ~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +.+....|-.|.++..+++|++|+..
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~  373 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGD  373 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHH
Confidence            45677778888888888888888753

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.95  E-value=5.2e-05  Score=50.40  Aligned_cols=83  Identities=10%  Similarity=-0.046  Sum_probs=68.6

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccCh-------hhHHHHHHHH
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDL-------RFRYLAAKCL   82 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~-------~c~yL~A~c~   82 (95)
                      +-.-+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. .+.+.++       ...+..|.+.
T Consensus        48 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  127 (228)
T 4i17_A           48 CGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF  127 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH
Confidence            45567789999999999999999997 5667888999999999999999988764 1223444       4577889999


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      ..+|++++|+..
T Consensus       128 ~~~~~~~~A~~~  139 (228)
T 4i17_A          128 QQAGNIEKAEEN  139 (228)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHhccHHHHHHH
Confidence            999999999864

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.92  E-value=0.00012  Score=51.81  Aligned_cols=86  Identities=14%  Similarity=0.116  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc--C-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALT--N-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKC   81 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c   81 (95)
                      ...-++.+.......+.++.|+-.-+++++..  | ++...+.+|.++...|++..|...+++    +.++.+.+..|++
T Consensus        64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~  139 (291)
T 3mkr_A           64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQI  139 (291)
T ss_dssp             HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHH
Confidence            34567778888888899999999999998764  5 566778889999999999999999998    4678899999999


Q ss_pred             HHHcccHHHHHhc
Q 040780           82 LEELKEWEQCLSM   94 (95)
Q Consensus        82 ~~~l~~~~eal~~   94 (95)
                      +.++|++++|+..
T Consensus       140 ~~~~g~~~~A~~~  152 (291)
T 3mkr_A          140 LLKLDRLDLARKE  152 (291)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHCCCHHHHHHH
Confidence            9999999999864

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.92  E-value=3.3e-05  Score=46.54  Aligned_cols=70  Identities=9%  Similarity=-0.063  Sum_probs=39.0

Q ss_pred             hHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           24 SAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        24 ~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      .|+-.-++++..+| ++...+.+|.+++..|++..|...+++. .+.+.+....+..|.++..+|++++|+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~   74 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ   74 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            34445555555554 4455556666666666666666655442 1223344555566666666666666654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.90  E-value=0.00023  Score=40.29  Aligned_cols=81  Identities=12%  Similarity=0.126  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~   83 (95)
                      ...+..+-..+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. .+.+.++...+..|.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34455666778899999999999999999986 6777889999999999999999988764 223456666677777766


Q ss_pred             Hcc
Q 040780           84 ELK   86 (95)
Q Consensus        84 ~l~   86 (95)
                      ++|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.89  E-value=9.3e-05  Score=43.78  Aligned_cols=80  Identities=9%  Similarity=-0.039  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      ...+..-+...++++.|+-+.++++...| ++...+.+|.+++..|++..|...+++. .+.+.+....+..+.++.+++
T Consensus        49 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           49 FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            34455667889999999999999999986 5778888999999999999999988764 233456778888999999888


Q ss_pred             cH
Q 040780           87 EW   88 (95)
Q Consensus        87 ~~   88 (95)
                      ++
T Consensus       129 ~~  130 (131)
T 2vyi_A          129 EA  130 (131)
T ss_dssp             TC
T ss_pred             cC
Confidence            75

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.89  E-value=0.00014  Score=46.98  Aligned_cols=85  Identities=7%  Similarity=-0.039  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc-
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL-   85 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l-   85 (95)
                      +..+...+...++++.|+-+.++++..+| +++..+.+|.++...|++..|...+++. ...+.+....+..|.++... 
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~   90 (225)
T 2vq2_A           11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL   90 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence            34444455555555555555555555554 3444445555555555555555555432 11123344445555555555 


Q ss_pred             ccHHHHHh
Q 040780           86 KEWEQCLS   93 (95)
Q Consensus        86 ~~~~eal~   93 (95)
                      |++++|+.
T Consensus        91 ~~~~~A~~   98 (225)
T 2vq2_A           91 NRPAESMA   98 (225)
T ss_dssp             CCHHHHHH
T ss_pred             CcHHHHHH
Confidence            55555544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.88  E-value=8.9e-05  Score=56.30  Aligned_cols=86  Identities=12%  Similarity=0.033  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +..+-.-+...++|+.|+-..++++.++| +++..+.+|.+++..|++..|...+++. .+.+.+....+..|.++.++|
T Consensus        26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  105 (568)
T 2vsy_A           26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG  105 (568)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence            34445556667777777777777777775 4556666777777777777777766543 122345566677777777777


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      ++++|+..
T Consensus       106 ~~~~A~~~  113 (568)
T 2vsy_A          106 QAEAAAAA  113 (568)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            77777653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.88  E-value=0.00012  Score=52.78  Aligned_cols=87  Identities=10%  Similarity=0.060  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~   84 (95)
                      .-+..+-.-++..++|+.|+-+.++++.++| ++...+.+|.+++..|+|..|...+++. .+.+.+....+..+.++.+
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            4455566677889999999999999999997 7888999999999999999999988764 2345677888999999999


Q ss_pred             cccHHHHHh
Q 040780           85 LKEWEQCLS   93 (95)
Q Consensus        85 l~~~~eal~   93 (95)
                      +++++++..
T Consensus       277 ~~~~~~a~~  285 (336)
T 1p5q_A          277 IRRQLAREK  285 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998854

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.87  E-value=0.00014  Score=49.56  Aligned_cols=86  Identities=8%  Similarity=-0.075  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-cccc------------Chhh
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLR------------DLRF   74 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~------------~~~c   74 (95)
                      +..+..-+...++++.|+-+.++++...| ++...+.+|.+++..|++..|...+++.- +.+.            ....
T Consensus       209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  288 (327)
T 3cv0_A          209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM  288 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence            45566677889999999999999999986 67788889999999999999998887531 1222            4677


Q ss_pred             HHHHHHHHHHcccHHHHHhc
Q 040780           75 RYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        75 ~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+..|.++.++|++++|+.+
T Consensus       289 ~~~l~~~~~~~g~~~~A~~~  308 (327)
T 3cv0_A          289 WDFFRMLLNVMNRPDLVELT  308 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHH
Confidence            88899999999999999865

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.85  E-value=9.7e-05  Score=52.04  Aligned_cols=86  Identities=15%  Similarity=0.035  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +..+..-+...+.++.|+-+.++++...| ++...+.+|.++...|++..|...+++. .+.+.++...+..|.++.++|
T Consensus       216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  295 (365)
T 4eqf_A          216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG  295 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence            44455667778899999999999988886 5667778899999999999998887753 223456777888899999999


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      ++++|+..
T Consensus       296 ~~~~A~~~  303 (365)
T 4eqf_A          296 AYREAVSN  303 (365)
T ss_dssp             CCHHHHHH
T ss_pred             CHHHHHHH
Confidence            99988764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.84  E-value=3.7e-05  Score=58.40  Aligned_cols=77  Identities=16%  Similarity=0.116  Sum_probs=49.2

Q ss_pred             HHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           17 VSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        17 l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      ..+++|+.|+-..++++.++| ++...+.+|.+++..|+|..|...+++. .+.+.++...+..|.++.++|++++|+.
T Consensus        17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~   95 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR   95 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            456667777777777777665 4555666677777777777776666543 2234455666666777777777777664

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.83  E-value=3.5e-05  Score=55.80  Aligned_cols=89  Identities=12%  Similarity=0.019  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCch------------------hHHHHHHHHhhCCCHHHHHHHHhcC-c
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPA------------------DVYMQAQALFLGRHYRRAFHLLNAS-K   66 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~------------------~~~llA~~l~~~~~~~~A~~ll~~~-~   66 (95)
                      ...++..-..+...++|+.|+-.-++++.+.++..                  ..+.+|.|++..|+|..|+..+++. .
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44556666677788889999999999888876422                  4567899999999999998877653 2


Q ss_pred             ccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           67 IVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        67 l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +.+.+....|-.|.++..+++|++|+..
T Consensus       259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~  286 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAELGQMDSARDD  286 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3345677888889999999999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.83  E-value=0.00029  Score=49.46  Aligned_cols=88  Identities=16%  Similarity=0.080  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-------------------
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-------------------   66 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-------------------   66 (95)
                      +.+...-...+..+.++.|+-.-++++..+| +++..+.+|.++...|++..|...+++..                   
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~  197 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX  197 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence            3445566677899999999999999999997 67788899999999999999998887631                   


Q ss_pred             ----------------ccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           67 ----------------IVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        67 ----------------l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                                      ..+.++..++-.|.++...|++++|+..
T Consensus       198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~  241 (287)
T 3qou_A          198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALEL  241 (287)
T ss_dssp             HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHH
Confidence                            1234566788889999999999999875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.82  E-value=0.00011  Score=49.43  Aligned_cols=88  Identities=7%  Similarity=-0.045  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC----chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccCh---hhHHHH
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTND----PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDL---RFRYLA   78 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~----~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~---~c~yL~   78 (95)
                      +.+-......+..++|+.|+-.-++++...|+    ++..+.+|.+++..|+|..|+..+++. ...+.++   ...|..
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~   84 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence            34455667789999999999999999998863    257899999999999999999887653 1122333   367888


Q ss_pred             HHHHHH------------------cccHHHHHhc
Q 040780           79 AKCLEE------------------LKEWEQCLSM   94 (95)
Q Consensus        79 A~c~~~------------------l~~~~eal~~   94 (95)
                      |.|..+                  .|++++|+..
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  118 (225)
T 2yhc_A           85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD  118 (225)
T ss_dssp             HHHHHHHHC--------------CCHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence            998886                  4678888754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.82  E-value=0.00019  Score=51.64  Aligned_cols=85  Identities=6%  Similarity=-0.038  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcCCc-----hhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTNDP-----ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~~~-----~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~   83 (95)
                      ......+...++++.|+-+-++++...|+.     ...+.+|.++...|++..|...+++. .+.+.++...+..|.++.
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  340 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL  340 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            344778889999999999999999998752     35677899999999999999998864 233557788899999999


Q ss_pred             HcccHHHHHhc
Q 040780           84 ELKEWEQCLSM   94 (95)
Q Consensus        84 ~l~~~~eal~~   94 (95)
                      +.|++++|+..
T Consensus       341 ~~~~~~~A~~~  351 (450)
T 2y4t_A          341 IEEMYDEAIQD  351 (450)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HhcCHHHHHHH
Confidence            99999999864

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.81  E-value=0.00018  Score=52.78  Aligned_cols=86  Identities=10%  Similarity=0.003  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +..+..-+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++...|
T Consensus       313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  392 (537)
T 3fp2_A          313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG  392 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence            44555667788899999999999998886 6777888899999999999998888653 223456677888899999999


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      ++++|+..
T Consensus       393 ~~~~A~~~  400 (537)
T 3fp2_A          393 DFDTAIKQ  400 (537)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99998764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.77  E-value=0.00023  Score=52.39  Aligned_cols=86  Identities=13%  Similarity=0.066  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +..+-.-++..++|+.|+-+.++++.++| ++...+.+|.+++..|+|..|...+++. .+.+.+.......+.+..+++
T Consensus       276 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          276 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            34455567889999999999999999996 6788899999999999999999988764 234567788899999999999


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      +++++...
T Consensus       356 ~~~~a~k~  363 (370)
T 1ihg_A          356 AQKDKEKA  363 (370)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99998754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.76  E-value=0.00011  Score=49.94  Aligned_cols=86  Identities=16%  Similarity=0.115  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-C---chhHHHHHHHHhh--------CCCHHHHHHHHhcCc-ccccChhhH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-D---PADVYMQAQALFL--------GRHYRRAFHLLNASK-IVLRDLRFR   75 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~---~~~~~llA~~l~~--------~~~~~~A~~ll~~~~-l~~~~~~c~   75 (95)
                      +-.+-.-+...+.|+.|+-+-++++...| +   ++..|.+|.|++.        .|++..|+..+++.- ..+.++...
T Consensus        55 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A           55 QFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence            34455567889999999999999999986 3   4468899999999        999999999887531 112233333


Q ss_pred             -----------------HHHHHHHHHcccHHHHHhc
Q 040780           76 -----------------YLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        76 -----------------yL~A~c~~~l~~~~eal~~   94 (95)
                                       +..|.++.+.|+|++|+..
T Consensus       135 ~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A          135 DATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence                             7789999999999999864

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.75  E-value=0.00019  Score=57.67  Aligned_cols=85  Identities=13%  Similarity=0.007  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +..+=.-+.++++|+.|+-.-+|++.++| +++..+.+|.+|...|++..|+..+++. .+...+....+-.|.++.++|
T Consensus        12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g   91 (723)
T 4gyw_A           12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ   91 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            33444445566666666666666666665 4455555666666666666666655542 223344555555666666666


Q ss_pred             cHHHHHh
Q 040780           87 EWEQCLS   93 (95)
Q Consensus        87 ~~~eal~   93 (95)
                      ++++|+.
T Consensus        92 ~~~~A~~   98 (723)
T 4gyw_A           92 DVQGALQ   98 (723)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            6666654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.73  E-value=0.00028  Score=42.09  Aligned_cols=80  Identities=10%  Similarity=-0.016  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      -+..+..-+...++++.|+.+.++++..++ ++...+.+|.+++..|++..|...+++. ...+.+....+..+.+....
T Consensus        52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           52 LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            344555667889999999999999999986 6778889999999999999999988764 22345567778888888776


Q ss_pred             cc
Q 040780           86 KE   87 (95)
Q Consensus        86 ~~   87 (95)
                      ++
T Consensus       132 ~~  133 (133)
T 2lni_A          132 YN  133 (133)
T ss_dssp             TC
T ss_pred             cC
Confidence            53

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.73  E-value=0.00017  Score=47.25  Aligned_cols=85  Identities=19%  Similarity=0.112  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      -+..+-.-++..++|+.|+-+.++++.++| ++...+.+|.+++..|+|..|...+++. .+.+.+.......+.|...+
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            344555667889999999999999999996 6788899999999999999999988764 23456778888999999999


Q ss_pred             ccHHHHH
Q 040780           86 KEWEQCL   92 (95)
Q Consensus        86 ~~~~eal   92 (95)
                      ++.+++.
T Consensus       170 ~~~~~~~  176 (198)
T 2fbn_A          170 KEARKKD  176 (198)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHH
Confidence            8887765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.71  E-value=0.0002  Score=43.53  Aligned_cols=87  Identities=14%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC---C----chhHHHHHHHHhhCCCHHHHHHHHhcC-------cccccChh
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN---D----PADVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLR   73 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~---~----~~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~   73 (95)
                      -+..+-.-+...++|+.|+-+.++.+.+.+   +    ....+.+|.+++..|++..|...+++.       +.......
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            445566677788899999999998887763   2    235667788999999998888777543       11112245


Q ss_pred             hHHHHHHHHHHcccHHHHHhc
Q 040780           74 FRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        74 c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +.+..|.++...|++++|+..
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~  151 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHF  151 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHH
Confidence            677788888899999888754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.69  E-value=0.00018  Score=43.78  Aligned_cols=89  Identities=7%  Similarity=0.039  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC-c------hhHHHHHHHHhhCCCHHHHHHHHhcCc-------ccccC
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-P------ADVYMQAQALFLGRHYRRAFHLLNASK-------IVLRD   71 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~------~~~~llA~~l~~~~~~~~A~~ll~~~~-------l~~~~   71 (95)
                      ..-+..+-.-+...++|+.|+-+.++.+.+.+. +      ...+.+|.+++..|++..|...+++.-       -....
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            334556667778899999999999999988742 1      267788999999999999998887531       11112


Q ss_pred             hhhHHHHHHHHHHcccHHHHHhc
Q 040780           72 LRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        72 ~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ..+.+..|.++...+++++|+..
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~  111 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDY  111 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHH
Confidence            45677889999999999999864

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.68  E-value=0.00036  Score=46.66  Aligned_cols=86  Identities=15%  Similarity=-0.095  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHHHc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l   85 (95)
                      -+..+..-+...++|+.|+-+.++++.++| ++...+.+|.+++..|++..|...+++.- +.+.+..... ....+...
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~  157 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL-WLYLAEQK  157 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHh
Confidence            344566677889999999999999999997 68888999999999999999999887642 2233333333 33444777


Q ss_pred             ccHHHHHhc
Q 040780           86 KEWEQCLSM   94 (95)
Q Consensus        86 ~~~~eal~~   94 (95)
                      +++++|+..
T Consensus       158 ~~~~~A~~~  166 (275)
T 1xnf_A          158 LDEKQAKEV  166 (275)
T ss_dssp             HCHHHHHHH
T ss_pred             cCHHHHHHH
Confidence            889888764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.65  E-value=0.00033  Score=53.17  Aligned_cols=87  Identities=8%  Similarity=0.003  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      -+..+-.-+...++++.|+-+.++++.++| +++..+.+|.+++..|++..|...+++. .+...+....+..|.++..+
T Consensus        59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            344556677889999999999999999997 6778889999999999999999988764 23345677888999999999


Q ss_pred             ---ccHHHHHhc
Q 040780           86 ---KEWEQCLSM   94 (95)
Q Consensus        86 ---~~~~eal~~   94 (95)
                         +++++|+..
T Consensus       139 ~~~g~~~~A~~~  150 (568)
T 2vsy_A          139 CDWRALDVLSAQ  150 (568)
T ss_dssp             TCCTTHHHHHHH
T ss_pred             hccccHHHHHHH
Confidence               999998764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.65  E-value=0.0004  Score=52.18  Aligned_cols=86  Identities=15%  Similarity=0.188  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      -+..+-.-++..++|+.|+-..++++.++| ++...|.+|.+++..|+|..|...+++. .+.+.+....+..+.+..++
T Consensus       319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~  398 (457)
T 1kt0_A          319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA  398 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            344556667889999999999999999996 7888999999999999999999988764 24455667888899999999


Q ss_pred             ccHHHHHh
Q 040780           86 KEWEQCLS   93 (95)
Q Consensus        86 ~~~~eal~   93 (95)
                      ++++++..
T Consensus       399 ~~~~~a~~  406 (457)
T 1kt0_A          399 KEHNERDR  406 (457)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.64  E-value=0.00035  Score=49.69  Aligned_cols=82  Identities=11%  Similarity=-0.014  Sum_probs=48.4

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHH
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWE   89 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~   89 (95)
                      +..-+...++++.|+-+-++++..+| +++....+|.++...|++..|...+++. .+.+.+....+..|.++.+.|+++
T Consensus       277 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  356 (388)
T 1w3b_A          277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ  356 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence            34445556666666666666666664 4455555666666666666666666543 122334455566666666666666


Q ss_pred             HHHh
Q 040780           90 QCLS   93 (95)
Q Consensus        90 eal~   93 (95)
                      +|+.
T Consensus       357 ~A~~  360 (388)
T 1w3b_A          357 EALM  360 (388)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.62  E-value=5.2e-05  Score=48.65  Aligned_cols=79  Identities=6%  Similarity=0.022  Sum_probs=61.6

Q ss_pred             HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH-HHHcccH--HH
Q 040780           16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC-LEELKEW--EQ   90 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c-~~~l~~~--~e   90 (95)
                      .+..++|+.|+-+.++++..+| +++..+.+|.+++..|++..|...+++. .+.+.++...+..|.+ +...+++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            3467899999999999999997 6778889999999999999999988764 2334567788888999 7789998  98


Q ss_pred             HHhc
Q 040780           91 CLSM   94 (95)
Q Consensus        91 al~~   94 (95)
                      |+..
T Consensus       100 A~~~  103 (177)
T 2e2e_A          100 TRAM  103 (177)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.62  E-value=3e-05  Score=50.73  Aligned_cols=82  Identities=12%  Similarity=0.140  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~   84 (95)
                      +.....+.+.+..+..      -++++.++| +++..|.+|.+++..|+|..|...+++. .+.+.++...+-.|.|+..
T Consensus         9 ~~~~~~l~~~~~~~~~------l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~   82 (151)
T 3gyz_A            9 ESISTAVIDAINSGAT------LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI   82 (151)
T ss_dssp             CHHHHHHHHHHHTSCC------TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCC------HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3444555555554432      244555665 6778999999999999999999988764 2346778888899999999


Q ss_pred             cccHHHHHhc
Q 040780           85 LKEWEQCLSM   94 (95)
Q Consensus        85 l~~~~eal~~   94 (95)
                      +|+|++|+..
T Consensus        83 ~g~~~~Ai~~   92 (151)
T 3gyz_A           83 KEQFQQAADL   92 (151)
T ss_dssp             TTCHHHHHHH
T ss_pred             HccHHHHHHH
Confidence            9999999874

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.61  E-value=0.00038  Score=44.19  Aligned_cols=83  Identities=10%  Similarity=-0.077  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccCh-hhHHHHHHHHHH
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDL-RFRYLAAKCLEE   84 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~-~c~yL~A~c~~~   84 (95)
                      -+..+-.-++..+.|+.|+-++++++.++| ++...+.+|.+++..|+|..|...+++. .+.+.+. ...-..+.+..+
T Consensus        65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            344555667889999999999999999997 6788899999999999999999988764 2334444 455566666666


Q ss_pred             cccHHH
Q 040780           85 LKEWEQ   90 (95)
Q Consensus        85 l~~~~e   90 (95)
                      ++++++
T Consensus       145 ~~~~~~  150 (162)
T 3rkv_A          145 RAEKKA  150 (162)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
Confidence            655544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.57  E-value=0.00087  Score=45.21  Aligned_cols=89  Identities=11%  Similarity=0.067  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc-----hhHHHHHHHHhhCCCHHHHHHHHhcC-------cccccChh
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDP-----ADVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLR   73 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~-----~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~   73 (95)
                      ...+...-..+...++|+.|+-+.++++...|+.     ...+.+|.+++..|++..|...+++.       +.......
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            3455566677889999999999999999998642     45668899999999999999887653       11123355


Q ss_pred             hHHHHHHHHHHcccHHHHHhc
Q 040780           74 FRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        74 c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ..+..|.++...|++++|+..
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~  105 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVC  105 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHH
Confidence            677889999999999999864

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.57  E-value=0.00014  Score=43.47  Aligned_cols=57  Identities=7%  Similarity=-0.013  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      +..+-.-+...++|+.|+-+-++++.++| +++..+.+|.+++..|++..|...+++.
T Consensus        10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A           10 RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34455567788999999999999998886 5677788899999999999998888763

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.57  E-value=0.0003  Score=46.72  Aligned_cols=89  Identities=8%  Similarity=-0.017  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhc--------C-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-c--------
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALT--------N-DPADVYMQAQALFLGRHYRRAFHLLNASK-I--------   67 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--------~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l--------   67 (95)
                      ..-+..+..-+...++|+.|+-+.++++.+.        + .....+.+|.+++..|++..|...+++.- +        
T Consensus        85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  164 (283)
T 3edt_B           85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD  164 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            4455667777888999999999999999883        1 24466778999999999999998886531 1        


Q ss_pred             cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           68 VLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        68 ~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ........+..|.++...|++++|+..
T Consensus       165 ~~~~~~~~~~la~~~~~~g~~~~A~~~  191 (283)
T 3edt_B          165 DPNVAKTKNNLASCYLKQGKYQDAETL  191 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            223456778889999999999999864

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.00051  Score=49.83  Aligned_cols=86  Identities=12%  Similarity=0.030  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +..+..-+...++++.|+-+.++++...| ++...+.+|.+++..|++..|...+++. ...+.++...+..|.++...|
T Consensus       307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  386 (514)
T 2gw1_A          307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN  386 (514)
T ss_dssp             HHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Confidence            34455667778889999999999888886 6677788889999999999988877653 122345667788889999999


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      ++++|+..
T Consensus       387 ~~~~A~~~  394 (514)
T 2gw1_A          387 DFDKALKQ  394 (514)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99988764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.55  E-value=0.00098  Score=44.79  Aligned_cols=88  Identities=14%  Similarity=0.038  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc-------h------hHHHHHHHHhhCCCHHHHHHHHhcCc-c-----
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTNDP-------A------DVYMQAQALFLGRHYRRAFHLLNASK-I-----   67 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~-------~------~~~llA~~l~~~~~~~~A~~ll~~~~-l-----   67 (95)
                      +.+...-......+.|+.|+..-+|.+.++|+.       .      .-+-+|.|+...|+|..|+...++.- +     
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            344455556678999999999999999999861       1      34556999999999999988776541 2     


Q ss_pred             --cccChhhH----HHHHHHHHHcccHHHHHhc
Q 040780           68 --VLRDLRFR----YLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        68 --~~~~~~c~----yL~A~c~~~l~~~~eal~~   94 (95)
                        .+......    |-.|.++..+|+++||+..
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~  124 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPE  124 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH
Confidence              34455566    7889999999999999864

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.54  E-value=0.00094  Score=41.68  Aligned_cols=80  Identities=16%  Similarity=0.026  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHccc
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKE   87 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~   87 (95)
                      ..+-.-+...++|+.|+-+.++++.++| +++..+.+|.|++..|++..|...+++. .+.+.++....+..++...++.
T Consensus        56 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  135 (142)
T 2xcb_A           56 LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA  135 (142)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence            3444556789999999999999999997 7788889999999999999999988764 1223455566666776666555


Q ss_pred             HH
Q 040780           88 WE   89 (95)
Q Consensus        88 ~~   89 (95)
                      .+
T Consensus       136 l~  137 (142)
T 2xcb_A          136 VT  137 (142)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.54  E-value=0.00025  Score=47.13  Aligned_cols=89  Identities=12%  Similarity=-0.056  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhc-----C----CchhHHHHHHHHhhCCCHHHHHHHHhcCcc---------
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALT-----N----DPADVYMQAQALFLGRHYRRAFHLLNASKI---------   67 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~-----~----~~~~~~llA~~l~~~~~~~~A~~ll~~~~l---------   67 (95)
                      ..-+..+-.-+...++|+.|+-+.++++.+.     +    .....+.+|.+++..|++..|...+++.--         
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            4456667778889999999999999999884     2    234677889999999999999988875311         


Q ss_pred             cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           68 VLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        68 ~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+......+..|.++..+|++++|+..
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~  149 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYY  149 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            123456678889999999999999864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.54  E-value=0.00017  Score=46.70  Aligned_cols=87  Identities=13%  Similarity=0.093  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc--------------------
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK--------------------   66 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~--------------------   66 (95)
                      .+-......+..++++.|+-..++++..+| +++..+.+|.++...|++..|...+++.-                    
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence            345566778889999999999999999996 67788899999999999999988775431                    


Q ss_pred             ---------------ccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           67 ---------------IVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        67 ---------------l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                                     ..+.++...+..|.++...|++++|+..
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~  130 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL  130 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence                           0122455677788888888888888754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.54  E-value=0.00027  Score=47.82  Aligned_cols=88  Identities=8%  Similarity=0.050  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhc--------C-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-----------
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALT--------N-DPADVYMQAQALFLGRHYRRAFHLLNASK-----------   66 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--------~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-----------   66 (95)
                      .-+..+..-+...++++.|+-+.++++.+.        + .....+.+|.+++..|++..|...+++.-           
T Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  233 (311)
T 3nf1_A          154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV  233 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            335556667788999999999999999882        1 23456778999999999999988876531           


Q ss_pred             ---------------------------------------ccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           67 ---------------------------------------IVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        67 ---------------------------------------l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                                                             .........+..|.++.+.|++++|+..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  300 (311)
T 3nf1_A          234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL  300 (311)
T ss_dssp             ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence                                                   1123345677889999999999999864

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.53  E-value=0.00076  Score=47.90  Aligned_cols=75  Identities=9%  Similarity=-0.048  Sum_probs=30.1

Q ss_pred             HhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780           18 SKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL   92 (95)
Q Consensus        18 ~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal   92 (95)
                      ..+.++.|+-..++.+.++| ++...+.+|.+++..|++..|...+++. .+.+.++...+..|.++.+.|++++|+
T Consensus       215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  291 (388)
T 1w3b_A          215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE  291 (388)
T ss_dssp             TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            33444444444444444443 2233333444444444444444443321 111223333344444444444444443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.52  E-value=0.00029  Score=52.99  Aligned_cols=82  Identities=17%  Similarity=0.037  Sum_probs=46.2

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhC---------CCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLG---------RHYRRAFHLLNAS-KIVLRDLRFRYLAAKC   81 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~---------~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c   81 (95)
                      +-.-+...++|+.|+-+.++++.++|++...+.+|.++...         |++..|...+++. .+.+.+....+..|.+
T Consensus       143 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  222 (474)
T 4abn_A          143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA  222 (474)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            33444555666666666666666665555555566666666         6666666555442 1223445555566666


Q ss_pred             HHHc--------ccHHHHHh
Q 040780           82 LEEL--------KEWEQCLS   93 (95)
Q Consensus        82 ~~~l--------~~~~eal~   93 (95)
                      +..+        +++++|+.
T Consensus       223 ~~~~~~~~~~~~g~~~~A~~  242 (474)
T 4abn_A          223 YLSLYFNTGQNPKISQQALS  242 (474)
T ss_dssp             HHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHhhccccchHHHHHH
Confidence            6666        66666654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.52  E-value=0.00016  Score=54.82  Aligned_cols=86  Identities=15%  Similarity=0.154  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH--HHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC--LEE   84 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c--~~~   84 (95)
                      +..+-.-+..+++|+.|+-..++++.++| ++...+.+|.+++..|++.+|...+++. .+.+.+....+..+.+  +.+
T Consensus        43 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  122 (477)
T 1wao_1           43 YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  122 (477)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            44555667889999999999999999997 6778889999999999999999988764 2234556677778888  888


Q ss_pred             cccHHHHHhc
Q 040780           85 LKEWEQCLSM   94 (95)
Q Consensus        85 l~~~~eal~~   94 (95)
                      .++|++|+..
T Consensus       123 ~g~~~~A~~~  132 (477)
T 1wao_1          123 QKAFERAIAG  132 (477)
T ss_dssp             HHHHCCC---
T ss_pred             HHHHHHHhcc
Confidence            8999988764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.51  E-value=0.00011  Score=47.11  Aligned_cols=65  Identities=14%  Similarity=0.237  Sum_probs=53.1

Q ss_pred             HHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           30 DKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        30 ekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ++++.++| +++..+.+|.+++..|+|..|+..+++. .+.+.++...+..|.|+..+|+|++|+..
T Consensus        11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~   77 (148)
T 2vgx_A           11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS   77 (148)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence            55666665 6678888999999999999999988763 23356777888899999999999999864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.51  E-value=0.0014  Score=38.13  Aligned_cols=77  Identities=12%  Similarity=0.126  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      +..+..-+...++++.|+-+.+++....| ++...+.+|.+++..|++..|...+++. ...+.++...+..+.+....
T Consensus        46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            44566677889999999999999999986 6677788999999999999999988763 22345666677777766554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.50  E-value=0.00047  Score=46.61  Aligned_cols=90  Identities=13%  Similarity=0.057  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc--------C-CchhHHHHHHHHhhCCCHHHHHHHHhcCcc--------
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALT--------N-DPADVYMQAQALFLGRHYRRAFHLLNASKI--------   67 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--------~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l--------   67 (95)
                      ..+-+..+...+...++|+.|+-+.++++.+.        + .....+.+|.+++..|++..|...+++.--        
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            45667788888999999999999999999862        1 345677889999999999999988865310        


Q ss_pred             -cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           68 -VLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        68 -~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                       ........+..|.++...|++++|+..
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~  133 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPL  133 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence             123456778889999999999999864

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.48  E-value=0.00068  Score=54.51  Aligned_cols=81  Identities=6%  Similarity=-0.069  Sum_probs=59.5

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHH
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQC   91 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~ea   91 (95)
                      .-+..+++++.|+-.-++++.++| +++..+.+|.++...|++..|+..+++. .+...+....+-.|.++.++|+++||
T Consensus        51 ~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA  130 (723)
T 4gyw_A           51 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA  130 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            345667888888888888888886 5667777888888888888887777653 23345666777778888888888887


Q ss_pred             Hhc
Q 040780           92 LSM   94 (95)
Q Consensus        92 l~~   94 (95)
                      +..
T Consensus       131 i~~  133 (723)
T 4gyw_A          131 IAS  133 (723)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.47  E-value=0.00081  Score=41.82  Aligned_cols=73  Identities=12%  Similarity=0.041  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC   81 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c   81 (95)
                      +..+-.-+...++|+.|+-..++++.++| +++..+.+|.+++..|+|..|...+++. .+.+.+...+.-.++|
T Consensus        50 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           50 YSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            33445567789999999999999999997 6778889999999999999999988764 2344566655555554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.47  E-value=0.00077  Score=47.92  Aligned_cols=90  Identities=10%  Similarity=0.011  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC-c----hhHHHHHHHHhhCCCHHHHHHHHhcC-------cccccCh
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTND-P----ADVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDL   72 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~----~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~   72 (95)
                      ....+...-..+...++|+.|+-+.++++.+.++ +    ...+.+|.+++..|++..|...+++.       +-.....
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            3455666777889999999999999999999864 3    35678899999999999999887653       1123445


Q ss_pred             hhHHHHHHHHHHcccHHHHHhc
Q 040780           73 RFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        73 ~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+.+..|.++...|++++|+..
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~  148 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAIC  148 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHH
Confidence            6788899999999999999864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.45  E-value=0.00068  Score=50.51  Aligned_cols=87  Identities=16%  Similarity=0.009  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhc------CC--chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHH
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALT------ND--PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLA   78 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~------~~--~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~   78 (95)
                      -+..++.-+...++++.|+-+-+++....      |+  ....+.++.++...|++..|...+++. .+.+.++...+..
T Consensus       477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  556 (597)
T 2xpi_A          477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI  556 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            35567778889999999999999999883      22  345678899999999999999988763 2234577889999


Q ss_pred             HHHHHHcccHHHHHhc
Q 040780           79 AKCLEELKEWEQCLSM   94 (95)
Q Consensus        79 A~c~~~l~~~~eal~~   94 (95)
                      |.++.+.|++++|+..
T Consensus       557 ~~~~~~~g~~~~A~~~  572 (597)
T 2xpi_A          557 ALVYLHKKIPGLAITH  572 (597)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHH
Confidence            9999999999999864

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.41  E-value=0.00093  Score=44.46  Aligned_cols=53  Identities=9%  Similarity=0.083  Sum_probs=46.4

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +-.-+...++|+.|+-+.++++.++| +++..+.+|.+++..|++..|...+++
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  113 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK  113 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55567789999999999999999997 677888899999999999999888775

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.41  E-value=0.00098  Score=40.23  Aligned_cols=60  Identities=17%  Similarity=0.019  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      ..-+..+-.-+...++|+.|+-+.++++.++| +++..+.+|.|++..|++..|...+++.
T Consensus        27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   87 (117)
T 3k9i_A           27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI   87 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34455666778899999999999999999997 6778889999999999999999988763

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.00025  Score=41.49  Aligned_cols=56  Identities=23%  Similarity=0.172  Sum_probs=46.6

Q ss_pred             chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           39 PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        39 ~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+..+.+|.+++..|+|..|+...++. .+.+.++...+..|.|+..+|+|++|+..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~   60 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM   60 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence            456778999999999999999988764 23356778889999999999999999864

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.37  E-value=0.00043  Score=52.06  Aligned_cols=83  Identities=8%  Similarity=-0.039  Sum_probs=67.2

Q ss_pred             HHHHHHHhCCh-hhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHc----
Q 040780           12 VVRDCVSKHLY-SSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEEL----   85 (95)
Q Consensus        12 ~v~~~l~~~~y-~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l----   85 (95)
                      +-.-+...++| +.|+-+.++++.++| +++..+.+|.+++..|++..|...+++.--........+..|.++..+    
T Consensus       108 lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~  187 (474)
T 4abn_A          108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDS  187 (474)
T ss_dssp             HHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSC
T ss_pred             HHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCC
Confidence            33455677899 999999999999997 677888999999999999999998876421123357778889999999    


Q ss_pred             -----ccHHHHHhc
Q 040780           86 -----KEWEQCLSM   94 (95)
Q Consensus        86 -----~~~~eal~~   94 (95)
                           +++++|+..
T Consensus       188 ~~~~~g~~~~A~~~  201 (474)
T 4abn_A          188 GDEHSRHVMDSVRQ  201 (474)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHH
Confidence                 999999864

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.34  E-value=0.0018  Score=38.35  Aligned_cols=57  Identities=21%  Similarity=0.206  Sum_probs=48.2

Q ss_pred             CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           38 DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ++...+.+|.+++..|+|..|+..+++. .+.+..+...+..|.|+.++|++++|+..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~   63 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT   63 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5667889999999999999999988764 23355677888999999999999999864

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.0018  Score=39.04  Aligned_cols=75  Identities=15%  Similarity=0.034  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-cc------ccChhhHHHHHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IV------LRDLRFRYLAAK   80 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~------~~~~~c~yL~A~   80 (95)
                      +..+-.-+...++|+.|+-..++++.++| ++...+.+|.+++..|++..|...+++.- +.      +.+.......++
T Consensus        41 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~  120 (126)
T 3upv_A           41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK  120 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence            34455567789999999999999999997 67788899999999999999999887631 22      334445555555


Q ss_pred             HHH
Q 040780           81 CLE   83 (95)
Q Consensus        81 c~~   83 (95)
                      |.-
T Consensus       121 ~~~  123 (126)
T 3upv_A          121 ASQ  123 (126)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.32  E-value=0.0014  Score=43.88  Aligned_cols=85  Identities=14%  Similarity=0.092  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcCCch----hHHHHHHHHhh------------------CCCHHHHHHHHhcCc-
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTNDPA----DVYMQAQALFL------------------GRHYRRAFHLLNASK-   66 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~----~~~llA~~l~~------------------~~~~~~A~~ll~~~~-   66 (95)
                      -.+..-+...++|+.|+-..++++...|+..    ..|.+|.+++.                  .|++..|+..+++.- 
T Consensus        45 ~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  124 (225)
T 2yhc_A           45 LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR  124 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH
Confidence            3345567789999999999999999997433    67899999986                  679999988776521 


Q ss_pred             ccccChhhH-----------------HHHHHHHHHcccHHHHHhc
Q 040780           67 IVLRDLRFR-----------------YLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        67 l~~~~~~c~-----------------yL~A~c~~~l~~~~eal~~   94 (95)
                      ..+.+....                 +..|.++++.|+|++|+..
T Consensus       125 ~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~  169 (225)
T 2yhc_A          125 GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNR  169 (225)
T ss_dssp             TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            112222211                 5668899999999999864

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.29  E-value=0.0013  Score=47.05  Aligned_cols=86  Identities=12%  Similarity=0.107  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcCC-c------hhHHHHHHHHhhCCCHHHHHHHHhcC-------cccccChhh
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTND-P------ADVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLRF   74 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~------~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~c   74 (95)
                      +..+-.-+...++|+.|+-+.++.+.+.+. +      ...+-+|.+++..|+|..|...+++.       +..+..+.+
T Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  266 (383)
T 3ulq_A          187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA  266 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence            344456677889999999999999988742 1      26777899999999999998877653       111345677


Q ss_pred             HHHHHHHHHHcccHHHHHhc
Q 040780           75 RYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        75 ~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+..|.++.++|++++|+..
T Consensus       267 ~~~l~~~~~~~g~~~~A~~~  286 (383)
T 3ulq_A          267 YFLITQIHYKLGKIDKAHEY  286 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHH
Confidence            88899999999999999864

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.28  E-value=0.0041  Score=35.79  Aligned_cols=73  Identities=14%  Similarity=-0.030  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKC   81 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c   81 (95)
                      +..+..-+...++|+.|+-+.++++...| ++...+.+|.+++..|++..|...+++. ...+.++...+..+++
T Consensus        41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           41 YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            44555667889999999999999999997 6778889999999999999999988764 2233455555544443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.28  E-value=0.0022  Score=44.55  Aligned_cols=84  Identities=18%  Similarity=0.064  Sum_probs=59.2

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcCC-ch------hHHHHHHHHhhCCCHHHHHHHHhcC--------cccccChhhH
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTND-PA------DVYMQAQALFLGRHYRRAFHLLNAS--------KIVLRDLRFR   75 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~------~~~llA~~l~~~~~~~~A~~ll~~~--------~l~~~~~~c~   75 (95)
                      .+..-+...++|+.|+..-++++.+... ++      ....+|.+++..|+|..|....++.        +.........
T Consensus       120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  199 (293)
T 3u3w_A          120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR  199 (293)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence            3445556677889999999998887632 22      3567788999999999888776653        1111223466


Q ss_pred             HHHHHHHHHcccHHHHHhc
Q 040780           76 YLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        76 yL~A~c~~~l~~~~eal~~   94 (95)
                      +-.|.++.++|+|++|+..
T Consensus       200 ~nlg~~y~~~~~y~~A~~~  218 (293)
T 3u3w_A          200 YNHAKALYLDSRYEESLYQ  218 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHH
Confidence            7788899999999998753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.27  E-value=0.0032  Score=44.02  Aligned_cols=87  Identities=11%  Similarity=0.083  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcCCc-----hhHHHHHHHHhhCCCHHHHHHHHhcC-------cccccChhhH
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTNDP-----ADVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLRFR   75 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~-----~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~c~   75 (95)
                      .+...-..+...++|+.|+-+.++++...|+.     ...+.+|.+++..|+|..|...+++.       +-......+.
T Consensus        11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   90 (406)
T 3sf4_A           11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   90 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            34555667889999999999999999998643     35678899999999999999877642       1112335577


Q ss_pred             HHHHHHHHHcccHHHHHhc
Q 040780           76 YLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        76 yL~A~c~~~l~~~~eal~~   94 (95)
                      +..|.++...|++++|+..
T Consensus        91 ~~la~~~~~~g~~~~A~~~  109 (406)
T 3sf4_A           91 GNLGNTLKVLGNFDEAIVC  109 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHH
Confidence            8889999999999999864

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.23  E-value=0.0035  Score=42.47  Aligned_cols=80  Identities=8%  Similarity=0.054  Sum_probs=43.1

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhh----CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH---
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFL----GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE---   84 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~----~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~---   84 (95)
                      +-..+...+.++.|+-+-++... .++++..+.+|.++..    .|++..|...+++.- ...++...+..|.++..   
T Consensus        12 lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~~~~g~~   89 (273)
T 1ouv_A           12 LGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLNYSNGCHLLGNLYYSGQG   89 (273)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHhCCCC
Confidence            33444555566666666666555 2344555556666666    666666665555431 12244555555666665   


Q ss_pred             -cccHHHHHh
Q 040780           85 -LKEWEQCLS   93 (95)
Q Consensus        85 -l~~~~eal~   93 (95)
                       .+++++|+.
T Consensus        90 ~~~~~~~A~~   99 (273)
T 1ouv_A           90 VSQNTNKALQ   99 (273)
T ss_dssp             SCCCHHHHHH
T ss_pred             cccCHHHHHH
Confidence             556655554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.22  E-value=0.0014  Score=48.70  Aligned_cols=78  Identities=10%  Similarity=-0.012  Sum_probs=52.1

Q ss_pred             HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCC-HHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780           16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRH-YRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL   92 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~-~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal   92 (95)
                      ....+.++.|+-..++++.++| +....+.+|.++...|+ +..|+..+++. .+.+++....+-.|.++..+|++++|+
T Consensus       107 ~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl  186 (382)
T 2h6f_A          107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL  186 (382)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHH
Confidence            3456777777777777777776 44455566777777776 77777766653 233456666666777777777776665


Q ss_pred             h
Q 040780           93 S   93 (95)
Q Consensus        93 ~   93 (95)
                      .
T Consensus       187 ~  187 (382)
T 2h6f_A          187 E  187 (382)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.20  E-value=0.0006  Score=39.26  Aligned_cols=57  Identities=14%  Similarity=0.421  Sum_probs=47.1

Q ss_pred             CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           38 DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +++..+.+|.+++..|++.+|...+++. .+.+.+....+..|.++..+|+|++|+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~   62 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC   62 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHH
Confidence            5667788999999999999999988764 22345677788899999999999999864

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.19  E-value=0.0022  Score=44.88  Aligned_cols=86  Identities=7%  Similarity=0.075  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-Cch------hHHHHHHHHhhCCCHHHHHHHHhcCc-cccc------Chhh
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPA------DVYMQAQALFLGRHYRRAFHLLNASK-IVLR------DLRF   74 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~------~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~------~~~c   74 (95)
                      +..+..-+...++|+.|+-+.++.+.+.+ .++      ..+.+|.+++..|++..|...+++.- +...      ....
T Consensus       190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  269 (406)
T 3sf4_A          190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS  269 (406)
T ss_dssp             HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence            44555666778888888888888887763 222      56677888888888888877776431 1011      1445


Q ss_pred             HHHHHHHHHHcccHHHHHhc
Q 040780           75 RYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        75 ~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+..|.++...|++++|+..
T Consensus       270 ~~~la~~~~~~g~~~~A~~~  289 (406)
T 3sf4_A          270 CYSLGNTYTLLQDYEKAIDY  289 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHH
Confidence            66678888888888887653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.17  E-value=0.00054  Score=53.95  Aligned_cols=80  Identities=18%  Similarity=0.039  Sum_probs=51.5

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      .+..-++..++|+.|+-..++++.++| +++..+.+|.+++..|+|..|+..+++. .+.+.++...+-.|.++.++|+|
T Consensus       438 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~  517 (681)
T 2pzi_A          438 MEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT  517 (681)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Confidence            344556778888888888888888886 5666777788888888888887766542 12223344444444444444444


Q ss_pred             HH
Q 040780           89 EQ   90 (95)
Q Consensus        89 ~e   90 (95)
                      ++
T Consensus       518 ~~  519 (681)
T 2pzi_A          518 DE  519 (681)
T ss_dssp             CT
T ss_pred             HH
Confidence            33

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.17  E-value=0.00079  Score=53.01  Aligned_cols=79  Identities=10%  Similarity=-0.060  Sum_probs=67.0

Q ss_pred             HHHhCChhhHHHHHHHHh--------hhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHc
Q 040780           16 CVSKHLYSSAIFFADKVA--------ALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~--------a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l   85 (95)
                      .+..++++.|+-..+++.        ..+| +.+..+.+|.+++..|+|..|...+++. .+...+....+..|.++..+
T Consensus       401 a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          401 ATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             HTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            377899999999999998        7765 6778888999999999999999988764 23456788899999999999


Q ss_pred             ccHHHHHhc
Q 040780           86 KEWEQCLSM   94 (95)
Q Consensus        86 ~~~~eal~~   94 (95)
                      |+|++|+..
T Consensus       481 g~~~~A~~~  489 (681)
T 2pzi_A          481 GDYDSATKH  489 (681)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            999999864

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.16  E-value=0.0016  Score=37.67  Aligned_cols=54  Identities=7%  Similarity=0.134  Sum_probs=47.0

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-Cch-hHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-DPA-DVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~-~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      ....++..++|+.|+-..++++..+| ++. ..+.+|.+++..|++..|...+++.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34567789999999999999999997 566 7888999999999999999988763

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.16  E-value=0.0016  Score=38.29  Aligned_cols=79  Identities=16%  Similarity=0.149  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-C-------chhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-D-------PADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAK   80 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~-------~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~   80 (95)
                      +..+..-+...++|+.|+-+.++++...+ +       +...+.+|.+++..|++..|...+++.--...++......++
T Consensus        41 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~  120 (131)
T 1elr_A           41 ITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ  120 (131)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            44556667889999999999999999985 3       567788999999999999999988764222235666666677


Q ss_pred             HHHHccc
Q 040780           81 CLEELKE   87 (95)
Q Consensus        81 c~~~l~~   87 (95)
                      +...+++
T Consensus       121 ~~~~~~~  127 (131)
T 1elr_A          121 AEKILKE  127 (131)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.13  E-value=0.0021  Score=43.31  Aligned_cols=87  Identities=11%  Similarity=0.113  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcCC-------chhHHHHHHHHhhCCCHHHHHHHHhcCc-------ccccChh
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTND-------PADVYMQAQALFLGRHYRRAFHLLNASK-------IVLRDLR   73 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-------~~~~~llA~~l~~~~~~~~A~~ll~~~~-------l~~~~~~   73 (95)
                      -+..+..-+...++++.|+-+.++.+.+.+.       ....+.+|.+++..|++..|...+++.-       -......
T Consensus       225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  304 (338)
T 3ro2_A          225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  304 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            3445556677788889998888888877631       3456678889999999998888776531       0111234


Q ss_pred             hHHHHHHHHHHcccHHHHHhc
Q 040780           74 FRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        74 c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +.+..|.++.+.|++++|+..
T Consensus       305 ~~~~la~~~~~~g~~~~A~~~  325 (338)
T 3ro2_A          305 ACWSLGNAYTALGNHDQAMHF  325 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHH
Confidence            667788888899999888764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.08  E-value=0.0035  Score=37.44  Aligned_cols=57  Identities=7%  Similarity=-0.063  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-C---chhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-D---PADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~---~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      +..+..-+...++|+.|+-+.++++...| +   ++..+.+|.+++..|++..|...+++.
T Consensus        42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  102 (129)
T 2xev_A           42 LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV  102 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33455567889999999999999999987 4   567899999999999999999988763

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.03  E-value=0.0024  Score=45.28  Aligned_cols=87  Identities=7%  Similarity=0.011  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-Cch------hHHHHHHHHhhCCCHHHHHHHHhcCc-ccc------cChh
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPA------DVYMQAQALFLGRHYRRAFHLLNASK-IVL------RDLR   73 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~------~~~llA~~l~~~~~~~~A~~ll~~~~-l~~------~~~~   73 (95)
                      -+..+..-+...++|+.|+-+.++.+.+.+ ..+      ..+.+|.+++..|++..|...+++.- +..      ....
T Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  304 (411)
T 4a1s_A          225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ  304 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            344455667788889999999888888774 222      56778889999999888888776531 001      1245


Q ss_pred             hHHHHHHHHHHcccHHHHHhc
Q 040780           74 FRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        74 c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ..+..|.++...|++++|+..
T Consensus       305 ~~~~la~~~~~~g~~~~A~~~  325 (411)
T 4a1s_A          305 SCYSLGNTYTLLHEFNTAIEY  325 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHH
Confidence            667778888888888888753

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.02  E-value=0.00075  Score=47.67  Aligned_cols=52  Identities=15%  Similarity=0.040  Sum_probs=29.4

Q ss_pred             HHHHHHHhhCCCHHHHHHHHhc---CcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           43 YMQAQALFLGRHYRRAFHLLNA---SKIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        43 ~llA~~l~~~~~~~~A~~ll~~---~~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      -.+|+.+...|++..|+..+++   .+..+.++...++.|..+...|++++|+..
T Consensus        69 ~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~  123 (291)
T 3mkr_A           69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT  123 (291)
T ss_dssp             HHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3334444444444444444432   111244566777888888888888888764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.00  E-value=0.0043  Score=39.22  Aligned_cols=57  Identities=12%  Similarity=-0.054  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      +..+-.-+...++|+.|+-+.++++.++| ++...+.+|.+++..|++..|...+++.
T Consensus        48 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           48 LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            44556667889999999999999999997 6778899999999999999999988753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.00  E-value=0.0013  Score=48.75  Aligned_cols=79  Identities=8%  Similarity=0.021  Sum_probs=62.7

Q ss_pred             HHHhCC-hhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHH
Q 040780           16 CVSKHL-YSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCL   92 (95)
Q Consensus        16 ~l~~~~-y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal   92 (95)
                      ....+. |+.|+-+.++++.++| ++...+.+|.++...|++..|+..+++. .+..++..+.+-.|.++..+|+|++|+
T Consensus       141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl  220 (382)
T 2h6f_A          141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL  220 (382)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence            445676 9999999999999986 6667777899999999999998887764 234567778888888888889888887


Q ss_pred             hc
Q 040780           93 SM   94 (95)
Q Consensus        93 ~~   94 (95)
                      ..
T Consensus       221 ~~  222 (382)
T 2h6f_A          221 QY  222 (382)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.00  E-value=0.0075  Score=40.79  Aligned_cols=73  Identities=8%  Similarity=0.093  Sum_probs=43.6

Q ss_pred             hCChhhHHHHHHHHhhhcCCchhHHHHHHHHhh----CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH----cccHHH
Q 040780           19 KHLYSSAIFFADKVAALTNDPADVYMQAQALFL----GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE----LKEWEQ   90 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~----~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~----l~~~~e   90 (95)
                      .++++.|+-|-++..... +++..+.+|.++..    .|++..|+..+++.- ...++...+..|.++..    .+++++
T Consensus        55 ~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~~~~~~~~~~~~~~  132 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLKYAEGCASLGGIYHDGKVVTRDFKK  132 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcCCccHHHHHHHHHHcCCCcccCHHH
Confidence            566666666666665553 55666666666666    666666666665431 12345555566666666    666666


Q ss_pred             HHh
Q 040780           91 CLS   93 (95)
Q Consensus        91 al~   93 (95)
                      |+.
T Consensus       133 A~~  135 (273)
T 1ouv_A          133 AVE  135 (273)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.95  E-value=0.0069  Score=41.95  Aligned_cols=84  Identities=17%  Similarity=0.198  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhc---CCc-----hhHHHHHHHHhhCCCHHHHHHHHhcCccc-------ccCh
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALT---NDP-----ADVYMQAQALFLGRHYRRAFHLLNASKIV-------LRDL   72 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~---~~~-----~~~~llA~~l~~~~~~~~A~~ll~~~~l~-------~~~~   72 (95)
                      -+..+-.-+...++|+.|+-+-++++.+.   ++.     ...+-+|.+++..|+|..|...+++.--.       ..-.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            44555667788999999999999988553   321     35677899999999999998887653100       1114


Q ss_pred             hhHHHHHHHHHHcccHHHH
Q 040780           73 RFRYLAAKCLEELKEWEQC   91 (95)
Q Consensus        73 ~c~yL~A~c~~~l~~~~ea   91 (95)
                      .+.+..|.++.++|++++|
T Consensus       237 ~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHHcCCcHHH
Confidence            5667889999999999988

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.94  E-value=0.0059  Score=36.87  Aligned_cols=74  Identities=18%  Similarity=0.048  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHH
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAK   80 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~   80 (95)
                      .-+..+..-+...++|+.|+-+.++++..+| ++...+.+|.+++..|++..|...+++. .+.+.+.......++
T Consensus        66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (148)
T 2dba_A           66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN  141 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            3455566678899999999999999999986 6677889999999999999999988764 122334444444333

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.93  E-value=0.0037  Score=44.59  Aligned_cols=84  Identities=10%  Similarity=0.051  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcC-Cc-------hhHHHHHHHHhhCCCHHHHHHHHhcCc-c------cccChhh
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DP-------ADVYMQAQALFLGRHYRRAFHLLNASK-I------VLRDLRF   74 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~-------~~~~llA~~l~~~~~~~~A~~ll~~~~-l------~~~~~~c   74 (95)
                      ..+-.-+...++|+.|+-+.++.+.+.+ .+       .....+|.++...|+|..|...+++.- +      .......
T Consensus       147 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  226 (383)
T 3ulq_A          147 FKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRT  226 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            3334444455566666666666555542 11       134445556666666666555444320 0      0011124


Q ss_pred             HHHHHHHHHHcccHHHHHh
Q 040780           75 RYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        75 ~yL~A~c~~~l~~~~eal~   93 (95)
                      .+-.|.++..+|++++|+.
T Consensus       227 ~~~lg~~y~~~g~~~~A~~  245 (383)
T 3ulq_A          227 LYNIGLCKNSQSQYEDAIP  245 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHH
Confidence            4445666666666666554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.91  E-value=0.0066  Score=36.53  Aligned_cols=56  Identities=11%  Similarity=0.033  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +..+-.-+...++|+.|+-+.++++.++| ++...+.+|.+++..|++..|...+++
T Consensus        46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  102 (137)
T 3q49_B           46 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR  102 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            44455667789999999999999999997 677889999999999999999988865

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.88  E-value=0.0055  Score=36.43  Aligned_cols=57  Identities=5%  Similarity=-0.083  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      +..+-.-+...++|+.|+-+.++++.++| +++..+.+|.++...|++..|...+++.
T Consensus        22 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A           22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34455667889999999999999999997 6778889999999999999999988763

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.88  E-value=0.0016  Score=40.03  Aligned_cols=56  Identities=5%  Similarity=-0.144  Sum_probs=47.8

Q ss_pred             chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           39 PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        39 ~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+..+.+|..++..|++..|+..+++. ...+.+....+..|.++...|++++|+..
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~   73 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIA   73 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            357889999999999999999988764 23456888899999999999999999865

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.86  E-value=0.0021  Score=39.80  Aligned_cols=52  Identities=13%  Similarity=0.244  Sum_probs=43.3

Q ss_pred             HHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           43 YMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        43 ~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .-+|.++|..|+|..|+...++. .+.+.++...+-.|.|+.++|+|++|+..
T Consensus        12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~   64 (127)
T 4gcn_A           12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF   64 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHH
Confidence            35799999999999999988764 24456777888889999999999999863

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.86  E-value=0.0022  Score=36.00  Aligned_cols=56  Identities=9%  Similarity=0.191  Sum_probs=45.6

Q ss_pred             chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           39 PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        39 ~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +...+.+|.+++..|++..|...+++. ...+.++...+..|.++.+.+++++|+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~   65 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY   65 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            456778899999999999999888753 22345677788999999999999999864

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.85  E-value=0.023  Score=39.24  Aligned_cols=90  Identities=11%  Similarity=-0.005  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCch-------hHHHHHHHHhhCCCHHHHHHHHhcCc-cccc------
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPA-------DVYMQAQALFLGRHYRRAFHLLNASK-IVLR------   70 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~-------~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~------   70 (95)
                      .++.+...+..++.+++|+.|+-+.++.....+...       ..+.+|.++...|+|..|+..+++.- +..+      
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            345667778889999999999999999888775322       24567888899999999999876431 1011      


Q ss_pred             ChhhHHHHHHHHHHcccHHHHHhc
Q 040780           71 DLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        71 ~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ...+.+-.|.++...|+|++|+..
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~  177 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDL  177 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHH
Confidence            134667789999999999999864

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.83  E-value=0.0065  Score=38.72  Aligned_cols=86  Identities=14%  Similarity=-0.105  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhc---C-Cc----hhHHHHHHHHhhCCCHHHHHHHHhcCc-------ccccChh
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALT---N-DP----ADVYMQAQALFLGRHYRRAFHLLNASK-------IVLRDLR   73 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~---~-~~----~~~~llA~~l~~~~~~~~A~~ll~~~~-------l~~~~~~   73 (95)
                      +..+-.-+...++|+.|+-+.++.+.+.   + ++    ...+.+|.+++..|++..|...+++.-       -......
T Consensus        69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  148 (203)
T 3gw4_A           69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC  148 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            4455566778899999999999988884   3 22    246677999999999999988776531       0011123


Q ss_pred             hHHHHHHHHHHcccHHHHHhc
Q 040780           74 FRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        74 c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +....|.++...|++++|+..
T Consensus       149 ~~~~la~~~~~~g~~~~A~~~  169 (203)
T 3gw4_A          149 AFRGLGDLAQQEKNLLEAQQH  169 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHH
Confidence            456778999999999998764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.79  E-value=0.0047  Score=39.42  Aligned_cols=89  Identities=4%  Similarity=-0.155  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-------CchhHHHHHHHHhhCCCHHHHHHHHhcC-------cccc-c
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-------DPADVYMQAQALFLGRHYRRAFHLLNAS-------KIVL-R   70 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-------~~~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~-~   70 (95)
                      ..-+..+-.-+...++|+.|+-+.++.+.+..       .....+.+|.++...|++..|...+++.       +-.. .
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  105 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA  105 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            34455666778889999999999999988652       2335677899999999999998877653       1011 2


Q ss_pred             ChhhHHHHHHHHHHcccHHHHHhc
Q 040780           71 DLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        71 ~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ...+.+..|.++...|++++|+..
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~  129 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQE  129 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHH
Confidence            245677789999999999999764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.78  E-value=0.0018  Score=37.49  Aligned_cols=53  Identities=15%  Similarity=0.214  Sum_probs=43.8

Q ss_pred             HHHHHHHHhhCCCHHHHHHHHhcC-cccccChh-hHHHHHHHHHHcccHHHHHhc
Q 040780           42 VYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLR-FRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        42 ~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~-c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+-.|.+++..|+|..|+..+++. ...+.++. ..+..|.|+..+|++++|+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~   57 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNN   57 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            467899999999999999988763 22345677 888999999999999999864

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.78  E-value=0.0023  Score=38.74  Aligned_cols=55  Identities=5%  Similarity=0.101  Sum_probs=26.9

Q ss_pred             chhHHHHHHHHhhCCCHHHHHHHHhcCc--------ccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           39 PADVYMQAQALFLGRHYRRAFHLLNASK--------IVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        39 ~~~~~llA~~l~~~~~~~~A~~ll~~~~--------l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      +++-|-+|..+|..|+|.+|+.+++..-        .......+.+..|.|++++|++++|+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~   67 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL   67 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHH
Confidence            3455555555555555555555554310        001233444555556666665555543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.76  E-value=0.0027  Score=38.32  Aligned_cols=43  Identities=12%  Similarity=0.190  Sum_probs=31.2

Q ss_pred             hhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           22 YSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        22 y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      .+.|.-+-++.+.++| ++...+++|..+|..|+|..|+...++
T Consensus        25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~   68 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVL   68 (93)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5677777777777775 666777777777777777777776554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.69  E-value=0.0055  Score=39.32  Aligned_cols=74  Identities=15%  Similarity=-0.058  Sum_probs=58.3

Q ss_pred             CChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-cccc--ChhhHHHHHHHHHHcccHHHHHh
Q 040780           20 HLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLR--DLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        20 ~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~--~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      .....|+-..++++..+| +++..+.+|.++...|++..|...+++.- ..+.  .....+..+.++..+|++++|+.
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            344457888899999987 67888999999999999999999887531 1122  24577888999999999998875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.69  E-value=0.0083  Score=41.74  Aligned_cols=86  Identities=10%  Similarity=-0.028  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHh-CChhhHHHHHHHHhhhcCC-------chhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccCh-------
Q 040780            9 LRGVVRDCVSK-HLYSSAIFFADKVAALTND-------PADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDL-------   72 (95)
Q Consensus         9 Lr~~v~~~l~~-~~y~~AiF~Aekl~a~~~~-------~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~-------   72 (95)
                      +..+-.-+... ++|+.|+-+-++.+.+.++       ......+|.++...|+|..|+..+++.. +.+.+.       
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  199 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence            34444455565 9999999999999998752       1235567999999999999999887631 111111       


Q ss_pred             hhHHHHHHHHHHcccHHHHHhc
Q 040780           73 RFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        73 ~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ...+-.|.|+..+|++++|+..
T Consensus       200 ~~~~~lg~~~~~~g~~~~A~~~  221 (292)
T 1qqe_A          200 DYFLKKGLCQLAATDAVAAART  221 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHH
Confidence            1334568999999999999864

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.69  E-value=0.013  Score=41.86  Aligned_cols=87  Identities=8%  Similarity=-0.011  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC---C----chhHHHHHHHHhhCCCHHHHHHHHhcCc------ccccChhh
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN---D----PADVYMQAQALFLGRHYRRAFHLLNASK------IVLRDLRF   74 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~---~----~~~~~llA~~l~~~~~~~~A~~ll~~~~------l~~~~~~c   74 (95)
                      -+..+-.-+...++|+.|+-+.++.+.+.+   +    ....+-+|.+++..|++..|...+++.-      ..+..+.+
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  263 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV  263 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence            344555667889999999999999998863   2    2245668999999999999988876531      12334678


Q ss_pred             HHHHHHHHHHcccHHHHHhc
Q 040780           75 RYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        75 ~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+..|.++.++|++++|+..
T Consensus       264 ~~~la~~~~~~g~~~~A~~~  283 (378)
T 3q15_A          264 LFGLSWTLCKAGQTQKAFQF  283 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHH
Confidence            88999999999999999864

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.66  E-value=0.036  Score=38.26  Aligned_cols=91  Identities=12%  Similarity=0.009  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchh------H-HHHHHHHhhCCCHHHHHHHHhcCc-c--cccC--
Q 040780            4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPAD------V-YMQAQALFLGRHYRRAFHLLNASK-I--VLRD--   71 (95)
Q Consensus         4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~------~-~llA~~l~~~~~~~~A~~ll~~~~-l--~~~~--   71 (95)
                      +....+...+...+.+++|+.|+-..+++....+...+      . +.++.+++..|+|..|+..+++.- +  ....  
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  152 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence            34566777789999999999999999999887753222      1 237888888999999998776531 0  0111  


Q ss_pred             --hhhHHHHHHHHHHcccHHHHHhc
Q 040780           72 --LRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        72 --~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                        ..+..-.|.++..+|+|++|+..
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~  177 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDL  177 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence              33567789999999999999863

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.58  E-value=0.012  Score=39.22  Aligned_cols=77  Identities=21%  Similarity=0.213  Sum_probs=51.9

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCC----CHHHHHHHHhcCcccccChhhHHHHHHHHHH----c
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGR----HYRRAFHLLNASKIVLRDLRFRYLAAKCLEE----L   85 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~----~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~----l   85 (95)
                      .-+...++++.|+-|-+|.... ++++..+.+|.+|.. |    ++.+|+.++++. ....++...+-.|.++..    .
T Consensus        26 ~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A-~~~g~~~a~~~Lg~~y~~g~g~~  102 (212)
T 3rjv_A           26 DTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEKA-VEAGSKSGEIVLARVLVNRQAGA  102 (212)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHTCGGGSS
T ss_pred             HHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHcCCCCc
Confidence            3444567778888888877554 567777777777776 5    777777777654 234566666777777766    6


Q ss_pred             ccHHHHHh
Q 040780           86 KEWEQCLS   93 (95)
Q Consensus        86 ~~~~eal~   93 (95)
                      +++++|+.
T Consensus       103 ~d~~~A~~  110 (212)
T 3rjv_A          103 TDVAHAIT  110 (212)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence            66776664

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.53  E-value=0.0085  Score=43.08  Aligned_cols=75  Identities=15%  Similarity=0.077  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~   84 (95)
                      ..+-.-++..++|+.|+-..++++.++| ++...+.+|.+++..|+|..|...+++. .+.+.+.......+++...
T Consensus       234 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          234 LNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            3445566788999999999999999997 6788899999999999999999999875 2334555566666666444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.49  E-value=0.0078  Score=36.27  Aligned_cols=55  Identities=7%  Similarity=0.067  Sum_probs=44.6

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC--------CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN--------DPADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~--------~~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      .+=..+.+++.|+.|++|-++++...+        .++-...||.|++..|++..|+...++.
T Consensus        10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A           10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            455678899999999999999887641        2334568899999999999999988764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.44  E-value=0.018  Score=44.34  Aligned_cols=90  Identities=11%  Similarity=0.029  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc----C--Cch---hHHHHHHHHhhCCCHHHHHHHHhcCc------ccc
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALT----N--DPA---DVYMQAQALFLGRHYRRAFHLLNASK------IVL   69 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~----~--~~~---~~~llA~~l~~~~~~~~A~~ll~~~~------l~~   69 (95)
                      +..-+..+..-+.+++.|+.|+-+.+|.+++.    |  +|+   ++.-+|..|...|+|..|..++++.-      +-.
T Consensus       350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~  429 (490)
T 3n71_A          350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP  429 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            34556677778889999999999999999886    2  333   66778999999999999998887531      112


Q ss_pred             cChh---hHHHHHHHHHHcccHHHHHhc
Q 040780           70 RDLR---FRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        70 ~~~~---c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .|+.   ..-+.++|..++++|++|+..
T Consensus       430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~  457 (490)
T 3n71_A          430 SHPITKDLEAMRMQTEMELRMFRQNEFM  457 (490)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3443   345678888999999998753

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.44  E-value=0.013  Score=40.70  Aligned_cols=87  Identities=7%  Similarity=-0.054  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC---C----chhHHHHHHHHhhC-CCHHHHHHHHhcCc-cccc------Ch
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN---D----PADVYMQAQALFLG-RHYRRAFHLLNASK-IVLR------DL   72 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~---~----~~~~~llA~~l~~~-~~~~~A~~ll~~~~-l~~~------~~   72 (95)
                      -+..+-.-+...++|+.|+-.-++.+.+.+   +    .....-+|.++... |+|..|+...++.- +.+.      ..
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~  158 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            344455556677888888888888888773   2    22455678888885 89888887776531 1111      13


Q ss_pred             hhHHHHHHHHHHcccHHHHHhc
Q 040780           73 RFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        73 ~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+..-.|.++.++|+|++|+..
T Consensus       159 ~~~~~lg~~~~~~g~~~~A~~~  180 (292)
T 1qqe_A          159 KCFIKCADLKALDGQYIEASDI  180 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHH
Confidence            4556678888899999988764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.24  E-value=0.0048  Score=41.38  Aligned_cols=76  Identities=8%  Similarity=0.058  Sum_probs=60.8

Q ss_pred             hCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHH----------HHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780           19 KHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYR----------RAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~----------~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      ..+|+.|+=.+++.+.++| +++..+.++.++...|++.          .|+..+++. .+.+......|-.|.++..++
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            4568899999999999998 5566666999999998864          888887764 345667788888999999875


Q ss_pred             -----------cHHHHHhc
Q 040780           87 -----------EWEQCLSM   94 (95)
Q Consensus        87 -----------~~~eal~~   94 (95)
                                 +|++|+..
T Consensus        95 ~l~P~~~~a~g~~~eA~~~  113 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQF  113 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHH
T ss_pred             ccCcchhhhhccHHHHHHH
Confidence                       78888763

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.18  E-value=0.023  Score=37.86  Aligned_cols=57  Identities=19%  Similarity=0.186  Sum_probs=45.3

Q ss_pred             CCchhHHHHHHHHhhCC---CHHHHHHHHhcCc-cc-c-cChhhHHHHHHHHHHcccHHHHHh
Q 040780           37 NDPADVYMQAQALFLGR---HYRRAFHLLNASK-IV-L-RDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        37 ~~~~~~~llA~~l~~~~---~~~~A~~ll~~~~-l~-~-~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      ++++..|-||.||.+++   +..+++.+++.-- .. + .+..|.|..|-.++++++|++|..
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            47889999999999999   5569988876421 11 1 356899999999999999999875

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.13  E-value=0.071  Score=37.92  Aligned_cols=55  Identities=15%  Similarity=0.158  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhc-----C-CchhHHHHHHHHhhCCCHHHHHHHHh
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALT-----N-DPADVYMQAQALFLGRHYRRAFHLLN   63 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~-----~-~~~~~~llA~~l~~~~~~~~A~~ll~   63 (95)
                      +..+-.-+...++|+.|+-+.++.+.+.     + .+...+.+|.+++..|++..|...++
T Consensus       225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  285 (378)
T 3q15_A          225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE  285 (378)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3344444555566666666666655522     1 23345555666666666665555544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.01  E-value=0.036  Score=38.75  Aligned_cols=84  Identities=10%  Similarity=0.114  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC---Cc----hhHHHHHHHHhhCCCHHHHHHHHhcCc-cc------ccChhh
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN---DP----ADVYMQAQALFLGRHYRRAFHLLNASK-IV------LRDLRF   74 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~---~~----~~~~llA~~l~~~~~~~~A~~ll~~~~-l~------~~~~~c   74 (95)
                      +..+-.-+...++|+.|+-+-++.+.+.+   ++    ....-+|.++.. |+|..|+...++.- +.      .....+
T Consensus        79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~  157 (307)
T 2ifu_A           79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL  157 (307)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence            34444455566777777777777766642   22    234456777766 77777766665421 00      011345


Q ss_pred             HHHHHHHHHHcccHHHHHh
Q 040780           75 RYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        75 ~yL~A~c~~~l~~~~eal~   93 (95)
                      ..-.|.++.++|+|++|+.
T Consensus       158 ~~~lg~~~~~~g~~~~A~~  176 (307)
T 2ifu_A          158 IGKASRLLVRQQKFDEAAA  176 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHH
Confidence            5556777777777777765

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=95.99  E-value=0.0098  Score=43.70  Aligned_cols=70  Identities=11%  Similarity=0.032  Sum_probs=55.8

Q ss_pred             HHHHHHHHhhhc-CCchhHHHHHHHHhhCCCHHHHHHHHhcC-ccc--ccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           25 AIFFADKVAALT-NDPADVYMQAQALFLGRHYRRAFHLLNAS-KIV--LRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        25 AiF~Aekl~a~~-~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~--~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      |+=.-+++++.. +++..++.+|+.+...|++..|..++.+. +..  ..++.+..+.+++++++|+.++|.+.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~  158 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI  158 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            444556666554 45667899999999999999999999875 222  26889999999999999999999865

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=95.80  E-value=0.031  Score=41.01  Aligned_cols=88  Identities=11%  Similarity=-0.016  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-----CchhHHHHHHH--HhhCC--CHHHHHHHHhcCcccccChh--
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-----DPADVYMQAQA--LFLGR--HYRRAFHLLNASKIVLRDLR--   73 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-----~~~~~~llA~~--l~~~~--~~~~A~~ll~~~~l~~~~~~--   73 (95)
                      .++-..-.|+-++..++.+.|.=..+++...++     +..-+..++..  .+..|  ++..|+.+++.-  ..+.+.  
T Consensus       135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El--~~~~p~~~  212 (310)
T 3mv2_B          135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL--SQTFPTWK  212 (310)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH--HTTSCSHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH--HHhCCCcc
Confidence            445556677778888888888888888777766     23445566555  55555  888888877762  223322  


Q ss_pred             -hHHHHHHHHHHcccHHHHHhcC
Q 040780           74 -FRYLAAKCLEELKEWEQCLSML   95 (95)
Q Consensus        74 -c~yL~A~c~~~l~~~~eal~~L   95 (95)
                       -..|.+ |...+|+|+||...|
T Consensus       213 ~~~lLln-~~~~~g~~~eAe~~L  234 (310)
T 3mv2_B          213 TQLGLLN-LHLQQRNIAEAQGIV  234 (310)
T ss_dssp             HHHHHHH-HHHHHTCHHHHHHHH
T ss_pred             cHHHHHH-HHHHcCCHHHHHHHH
Confidence             334555 888999999988753

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.75  E-value=0.07  Score=40.19  Aligned_cols=87  Identities=5%  Similarity=-0.088  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC---Cc------hhHHHHHHHHhhCCCHHHHHHHHhcCc------ccccCh
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN---DP------ADVYMQAQALFLGRHYRRAFHLLNASK------IVLRDL   72 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~---~~------~~~~llA~~l~~~~~~~~A~~ll~~~~------l~~~~~   72 (95)
                      .+-..+...-.++.|+.|+-..+++++...   .+      .+..-+|.+|...|+|.+|..+.++.-      +-..||
T Consensus       289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp  368 (429)
T 3qwp_A          289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP  368 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence            344456667789999999999999998762   22      256677999999999999988876520      112333


Q ss_pred             ---hhHHHHHHHHHHcccHHHHHhc
Q 040780           73 ---RFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        73 ---~c~yL~A~c~~~l~~~~eal~~   94 (95)
                         ...+=.|..+..+|+|+||+..
T Consensus       369 ~~a~~l~nLa~~~~~~g~~~eA~~~  393 (429)
T 3qwp_A          369 VRGVQVMKVGKLQLHQGMFPQAMKN  393 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence               3455678888999999999864

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.74  E-value=0.056  Score=33.84  Aligned_cols=73  Identities=12%  Similarity=0.009  Sum_probs=57.8

Q ss_pred             CChhhHHHHHHHHhhhcCCchhHHHHHHHHhh----CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH----cccHHHH
Q 040780           20 HLYSSAIFFADKVAALTNDPADVYMQAQALFL----GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE----LKEWEQC   91 (95)
Q Consensus        20 ~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~----~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~----l~~~~ea   91 (95)
                      ..++.|+.|-+|.... ++++..+.+|.+|+.    .+++.+|+.++++.- ...++...+-.|.++..    .+++++|
T Consensus        39 ~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g~~~a~~~Lg~~y~~G~g~~~d~~~A  116 (138)
T 1klx_A           39 INKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GLNDQDGCLILGYKQYAGKGVVKNEKQA  116 (138)
T ss_dssp             SCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             CCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-cCCCHHHHHHHHHHHHCCCCCCcCHHHH
Confidence            3455688888888765 788899999999998    899999999888752 23577778888998888    7888888


Q ss_pred             Hhc
Q 040780           92 LSM   94 (95)
Q Consensus        92 l~~   94 (95)
                      +..
T Consensus       117 ~~~  119 (138)
T 1klx_A          117 VKT  119 (138)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.71  E-value=0.04  Score=38.72  Aligned_cols=81  Identities=9%  Similarity=-0.049  Sum_probs=60.4

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcCCch------hHHHHHHHHhhCCCHHHHHHHHhcC-------cccccChhhHHHHHH
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTNDPA------DVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLRFRYLAAK   80 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~~~~------~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~c~yL~A~   80 (95)
                      .-.+..+.++.|+-+.++.+...+..+      ....+|.+++..|++.+|...+++.       +.......+....|.
T Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            345678999999999999988875332      3567799999999999998887653       111111234566788


Q ss_pred             HHHHcccHHHHHhc
Q 040780           81 CLEELKEWEQCLSM   94 (95)
Q Consensus        81 c~~~l~~~~eal~~   94 (95)
                      ++...|++++|+..
T Consensus       102 ~~~~~G~~~~A~~~  115 (373)
T 1hz4_A          102 ILFAQGFLQTAWET  115 (373)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHCCCHHHHHHH
Confidence            99999999999764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=95.64  E-value=0.089  Score=40.46  Aligned_cols=81  Identities=12%  Similarity=0.008  Sum_probs=60.7

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcC------Cc---hhHHHHHHHHhhCCCHHHHHHHHhcC------cccccCh---hhH
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTN------DP---ADVYMQAQALFLGRHYRRAFHLLNAS------KIVLRDL---RFR   75 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~------~~---~~~~llA~~l~~~~~~~~A~~ll~~~------~l~~~~~---~c~   75 (95)
                      .....++.|+.|+=+.++.+++..      +|   .+..-+|.+|...|+|.+|..+.++.      -+-..|+   ...
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            345679999999999999998862      22   26677899999999999998877652      0112343   345


Q ss_pred             HHHHHHHHHcccHHHHHhc
Q 040780           76 YLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        76 yL~A~c~~~l~~~~eal~~   94 (95)
                      .=.|..+..+|+|+||+..
T Consensus       397 ~nLa~~~~~~G~~~eA~~~  415 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGM  415 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHH
Confidence            5678888999999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.61  E-value=0.056  Score=37.52  Aligned_cols=56  Identities=11%  Similarity=0.033  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +..+-.-+...++|+.|+-..++++.++| ++...+.+|.+++..|++..|...+++
T Consensus        41 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   97 (281)
T 2c2l_A           41 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR   97 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33445567789999999999999999996 677889999999999999999988765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.60  E-value=0.03  Score=33.56  Aligned_cols=58  Identities=10%  Similarity=0.019  Sum_probs=49.0

Q ss_pred             CCchhHHHHHHHHhhCCC---HHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           37 NDPADVYMQAQALFLGRH---YRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        37 ~~~~~~~llA~~l~~~~~---~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ++++..+.+|++++..++   ...|..++++. .+++.++...++.|...++.|+|++|+..
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~   65 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDT   65 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            378888999999987766   68888888764 35678899999999999999999999874

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.54  E-value=0.11  Score=39.34  Aligned_cols=77  Identities=6%  Similarity=-0.041  Sum_probs=57.1

Q ss_pred             HhCChhhHHHHHHHHhhhcC------Cc---hhHHHHHHHHhhCCCHHHHHHHHhcCc------ccccChh---hHHHHH
Q 040780           18 SKHLYSSAIFFADKVAALTN------DP---ADVYMQAQALFLGRHYRRAFHLLNASK------IVLRDLR---FRYLAA   79 (95)
Q Consensus        18 ~~~~y~~AiF~Aekl~a~~~------~~---~~~~llA~~l~~~~~~~~A~~ll~~~~------l~~~~~~---c~yL~A   79 (95)
                      ..+.|+.|+=+.+|.+++..      +|   .+..-+|.+|...|+|.+|..+.++.-      +-..|+.   ...=.|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            45679999999999998762      22   255678999999999999988887530      1123433   445568


Q ss_pred             HHHHHcccHHHHHhc
Q 040780           80 KCLEELKEWEQCLSM   94 (95)
Q Consensus        80 ~c~~~l~~~~eal~~   94 (95)
                      ..+..+|+|+||+..
T Consensus       390 ~~~~~qg~~~eA~~~  404 (433)
T 3qww_A          390 RLYMGLENKAAGEKA  404 (433)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHhccCHHHHHHH
Confidence            888999999999864

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=95.52  E-value=0.12  Score=38.16  Aligned_cols=74  Identities=8%  Similarity=0.006  Sum_probs=53.2

Q ss_pred             hCChhhHHHHHHHHhhhcCCchhHHHHHHHHhh----CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH----cccHHH
Q 040780           19 KHLYSSAIFFADKVAALTNDPADVYMQAQALFL----GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE----LKEWEQ   90 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~----~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~----l~~~~e   90 (95)
                      ...++.|+-|-++.... ++++..+.+|..++.    .+++.+|..++++.- ...++...+..|.++..    .+++++
T Consensus        56 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~g~~~~~~~  133 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKGLPQAQQNLGVMYHEGNGVKVDKAE  133 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            57788888888887655 667788888888887    788888887776641 23466667777777777    667777


Q ss_pred             HHhc
Q 040780           91 CLSM   94 (95)
Q Consensus        91 al~~   94 (95)
                      |+..
T Consensus       134 A~~~  137 (490)
T 2xm6_A          134 SVKW  137 (490)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.50  E-value=0.14  Score=33.14  Aligned_cols=57  Identities=19%  Similarity=0.119  Sum_probs=45.7

Q ss_pred             CCchhHHHHHHHHhhCCCHHH---HHHHHhcCc-cc--ccChhhHHHHHHHHHHcccHHHHHh
Q 040780           37 NDPADVYMQAQALFLGRHYRR---AFHLLNASK-IV--LRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        37 ~~~~~~~llA~~l~~~~~~~~---A~~ll~~~~-l~--~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      +++++.|-||-||.++++...   .+.++..-- -.  ...-.|.|..|-.++++|+|++|..
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            588999999999999998877   787776521 00  1344799999999999999999975

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.49  E-value=0.038  Score=38.44  Aligned_cols=78  Identities=18%  Similarity=0.015  Sum_probs=58.4

Q ss_pred             HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccC--hhhHHHHHHHHHHcccHHHH
Q 040780           16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRD--LRFRYLAAKCLEELKEWEQC   91 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~--~~c~yL~A~c~~~l~~~~ea   91 (95)
                      ....+..+.|+=.-++++..+| +++..+.+|.++...|++..|...+.+.- ..+.+  ...+...+.++..+|+.++|
T Consensus       195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL  274 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred             HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence            3345556666666677788886 67888999999999999999998887531 11233  56678889999999998887


Q ss_pred             Hh
Q 040780           92 LS   93 (95)
Q Consensus        92 l~   93 (95)
                      +.
T Consensus       275 ~~  276 (287)
T 3qou_A          275 AS  276 (287)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=95.44  E-value=0.035  Score=38.76  Aligned_cols=80  Identities=10%  Similarity=0.012  Sum_probs=56.5

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcCC-------chhHHHHHHHHhhCCCHHHHHHHHhcCc-ccc----cC--hhhHHHHH
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTND-------PADVYMQAQALFLGRHYRRAFHLLNASK-IVL----RD--LRFRYLAA   79 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~~-------~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~----~~--~~c~yL~A   79 (95)
                      .-+.. ++|+.|+-+-++.+.+.+.       .....-+|.++...|+|..|+..+++.- +..    ..  ....+-.+
T Consensus       124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g  202 (307)
T 2ifu_A          124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV  202 (307)
T ss_dssp             HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            33444 8999999999999988742       2355667999999999999998887531 000    11  12344456


Q ss_pred             HHHHHcccHHHHHhc
Q 040780           80 KCLEELKEWEQCLSM   94 (95)
Q Consensus        80 ~c~~~l~~~~eal~~   94 (95)
                      .|++.+|++++|+..
T Consensus       203 ~~~~~~g~~~~A~~~  217 (307)
T 2ifu_A          203 LVQLHRADYVAAQKC  217 (307)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHH
Confidence            778888999999864

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.40  E-value=0.1  Score=36.62  Aligned_cols=85  Identities=15%  Similarity=0.054  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcC---C---ch---hHHHHHHHHhhCCCHHHHHHHHhcCc-----c-cccChhh
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTN---D---PA---DVYMQAQALFLGRHYRRAFHLLNASK-----I-VLRDLRF   74 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~---~---~~---~~~llA~~l~~~~~~~~A~~ll~~~~-----l-~~~~~~c   74 (95)
                      ..+-.-+...++|+.|+-+.++.+.+.+   +   +.   ....+|.+++..|++.+|...+++.-     . ......+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            3445567789999999999999988762   2   22   33458999999999999998886531     0 0113356


Q ss_pred             HHHHHHHHHHcccHHHHHhc
Q 040780           75 RYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        75 ~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+..|++....|++++|+..
T Consensus       177 ~~~la~~~~~~g~~~~A~~~  196 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQ  196 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHH
Confidence            67789999999999999764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.23  E-value=0.045  Score=39.61  Aligned_cols=51  Identities=8%  Similarity=-0.091  Sum_probs=22.0

Q ss_pred             HHHHHHHhhCCCHHHHHHHHhcCccccc----ChhhHHHHHHHHHHcccHHHHHh
Q 040780           43 YMQAQALFLGRHYRRAFHLLNASKIVLR----DLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        43 ~llA~~l~~~~~~~~A~~ll~~~~l~~~----~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      +.+|.++-..|++..|...+++...-..    .+...|-.|.|+.++|+.+||..
T Consensus       175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~  229 (282)
T 4f3v_A          175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA  229 (282)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence            4445555555555555544443210000    12234444555555555555543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.03  E-value=0.092  Score=34.77  Aligned_cols=66  Identities=12%  Similarity=0.020  Sum_probs=36.6

Q ss_pred             hCChhhHHHHHHHHhhhcCC---chhHHHHHHHHhh----CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH
Q 040780           19 KHLYSSAIFFADKVAALTND---PADVYMQAQALFL----GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~~---~~~~~llA~~l~~----~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~   84 (95)
                      ..+++.|+-|-++.....++   ++..+.+|.+|..    .+++..|..++++.--...++...+-.|.++..
T Consensus       102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence            34566666666666555443   5666666666666    556666666665531112344455555665554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=94.65  E-value=0.058  Score=39.02  Aligned_cols=82  Identities=6%  Similarity=-0.025  Sum_probs=63.5

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccC---hhhHHHHHHHHHHcccHH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRD---LRFRYLAAKCLEELKEWE   89 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~---~~c~yL~A~c~~~l~~~~   89 (95)
                      ..-.++.++|+.|.=.-+.+....|+....|.+|..++..|+|..|...+++..-....   ....|..|.++..+|+++
T Consensus       109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~  188 (282)
T 4f3v_A          109 AACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFT  188 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHH
Confidence            44567789999998888777766653227889999999999999999999865321111   236788899999999999


Q ss_pred             HHHhc
Q 040780           90 QCLSM   94 (95)
Q Consensus        90 eal~~   94 (95)
                      ||+..
T Consensus       189 eAl~~  193 (282)
T 4f3v_A          189 EAERR  193 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=94.54  E-value=0.17  Score=35.08  Aligned_cols=72  Identities=11%  Similarity=-0.014  Sum_probs=45.6

Q ss_pred             hhHHHHHHHHhh-hcCCc-hhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChh-hHHHHHHHHHHcccHHHHHhc
Q 040780           23 SSAIFFADKVAA-LTNDP-ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLR-FRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        23 ~~AiF~Aekl~a-~~~~~-~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~-c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +.|+-.-+|.+. +.|+. .--..+|..+...|++.+|..+.++. .+.+.++. ...-+|..+.+.|++++|+.+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~  156 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence            778888888777 56533 33445677777788888887776653 11223333 445567777777777777653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=94.37  E-value=0.21  Score=35.89  Aligned_cols=40  Identities=15%  Similarity=0.041  Sum_probs=18.0

Q ss_pred             hHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHh
Q 040780           24 SAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLN   63 (95)
Q Consensus        24 ~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~   63 (95)
                      .|+..-+++..++| .+...+.+|.++...|+|..|....+
T Consensus       318 ~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  358 (472)
T 4g1t_A          318 HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ  358 (472)
T ss_dssp             HHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence            33333344433332 23334444555555555555554444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=94.32  E-value=0.16  Score=39.20  Aligned_cols=73  Identities=16%  Similarity=0.169  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      ...+-..+-+.++|+.|.-+=++.       ++-..+|.|+++.|+|..|+...++.+    ++..---...+|.+.|+|
T Consensus       125 ~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA~----~~~~Wk~v~~aCv~~~ef  193 (449)
T 1b89_A          125 IQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKAN----STRTWKEVCFACVDGKEF  193 (449)
T ss_dssp             ------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHHT----CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHcC----CchhHHHHHHHHHHcCcH
Confidence            344455667778888888777755       567788999999999999988887753    222111223444555555


Q ss_pred             HHHH
Q 040780           89 EQCL   92 (95)
Q Consensus        89 ~eal   92 (95)
                      ++|.
T Consensus       194 ~lA~  197 (449)
T 1b89_A          194 RLAQ  197 (449)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.18  E-value=0.1  Score=34.54  Aligned_cols=58  Identities=14%  Similarity=0.043  Sum_probs=44.5

Q ss_pred             cCCchhHHHHHHHHhhCCCHH---HHHHHHhcCc--ccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           36 TNDPADVYMQAQALFLGRHYR---RAFHLLNASK--IVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        36 ~~~~~~~~llA~~l~~~~~~~---~A~~ll~~~~--l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      .+++++.|-+|-||.++.+..   +.+.+++.--  -....-.|.|..|-.++++|+|++|..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~   98 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR   98 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHH
Confidence            368899999999999999876   5666665410  001344799999999999999999875

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.06  E-value=0.49  Score=34.83  Aligned_cols=42  Identities=12%  Similarity=-0.083  Sum_probs=18.0

Q ss_pred             ChhhHHHHHHHHhhhcCCchhHHHHHHHHhh----CCCHHHHHHHHh
Q 040780           21 LYSSAIFFADKVAALTNDPADVYMQAQALFL----GRHYRRAFHLLN   63 (95)
Q Consensus        21 ~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~----~~~~~~A~~ll~   63 (95)
                      .++.|+-|-++.... ++++..+.+|.++..    .+++..|..+++
T Consensus       166 d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  211 (490)
T 2xm6_A          166 DYVMAREWYSKAAEQ-GNVWSCNQLGYMYSRGLGVERNDAISAQWYR  211 (490)
T ss_dssp             CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence            344444444444332 334444444444444    444444444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=93.79  E-value=0.12  Score=34.35  Aligned_cols=49  Identities=20%  Similarity=0.063  Sum_probs=41.9

Q ss_pred             HHHhCChhhHHHHHHHHhhh-------cCC-chhH----HHHHHHHhhCCCHHHHHHHHhc
Q 040780           16 CVSKHLYSSAIFFADKVAAL-------TND-PADV----YMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~-------~~~-~~~~----~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      ....++|+.|+-.+||.+.+       +|+ ....    |-.|.++...|+|..|+.-.++
T Consensus        67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k  127 (159)
T 2hr2_A           67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK  127 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence            45579999999999999999       874 4445    7899999999999999988875

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=93.41  E-value=0.32  Score=36.52  Aligned_cols=61  Identities=15%  Similarity=0.300  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc----C--Cch---hHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALT----N--DPA---DVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~----~--~~~---~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      +..-+..+..-+..++.|+.|+-+.+|++.+.    |  +|+   .++-+|..|...|+|.+|..++++.
T Consensus       328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            34556677778889999999999999999886    2  333   6778899999999999999988753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=93.34  E-value=0.48  Score=32.74  Aligned_cols=18  Identities=11%  Similarity=0.222  Sum_probs=7.7

Q ss_pred             hCChhhHHHHHHHHhhhc
Q 040780           19 KHLYSSAIFFADKVAALT   36 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~   36 (95)
                      .++++.|+-.-+|++.+.
T Consensus       112 ~~~~~~A~~~~~~al~~~  129 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIE  129 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSS
T ss_pred             cCCHHHHHHHHHHHHhcc
Confidence            344444444444444443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=93.29  E-value=0.37  Score=36.42  Aligned_cols=60  Identities=7%  Similarity=0.017  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhc----C--Cch---hHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALT----N--DPA---DVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~----~--~~~---~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      ..-+..+..-+.+++.|+.|+-+.+|.+++-    |  +|+   ++.-+|..|...|+|..|..++++.
T Consensus       340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            4456667777889999999999999999886    2  333   6777899999999999999988763

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.04  E-value=0.42  Score=35.32  Aligned_cols=60  Identities=8%  Similarity=-0.063  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      .++-+..++...+..+.++.|+-+++++++.+| +++-...+-.+|++.|+...|....+.
T Consensus       170 ~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~  230 (388)
T 2ff4_A          170 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR  230 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345566777888999999999999999999998 555666778999999999999877664

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=92.83  E-value=0.4  Score=29.79  Aligned_cols=70  Identities=13%  Similarity=0.032  Sum_probs=56.4

Q ss_pred             ChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHH----cccHHHHHhc
Q 040780           21 LYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE----LKEWEQCLSM   94 (95)
Q Consensus        21 ~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~----l~~~~eal~~   94 (95)
                      .++.|+.|-+|..... +++..  +|.++...+.+.+|+.++++.- ...++...+-.|.++..    .+++++|+..
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~--lg~~y~~g~~~~~A~~~~~~Aa-~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC--LSLVSNSQINKQKLFQYLSKAC-ELNSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH--HHHHTCTTSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh--HHHHHHcCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            5788999999987664 44444  9999999999999999888752 24678888999999998    7889988764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.55  E-value=0.34  Score=42.60  Aligned_cols=69  Identities=17%  Similarity=0.145  Sum_probs=50.7

Q ss_pred             HhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           18 SKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        18 ~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ..++|+.|+=+++|+    .+++--+.+|.++...|+++.|+....+.    .++...+=.|.|+.++|+|+|++..
T Consensus      1088 ~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred             HHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHH
Confidence            456677777777766    45667778888888888888888877664    3444555568888888888888764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=91.66  E-value=0.81  Score=32.75  Aligned_cols=53  Identities=13%  Similarity=0.116  Sum_probs=39.9

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcCCchhH----HHHHH-HHhhCCCHHHHHHHHhcC
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTNDPADV----YMQAQ-ALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~----~llA~-~l~~~~~~~~A~~ll~~~   65 (95)
                      -.-+...++|+.|+-+-+|++.+.+++.+.    +.++. .++..|++..|+...++.
T Consensus       341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka  398 (472)
T 4g1t_A          341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG  398 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            345677899999999999999988755432    33443 456889999999888764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=91.59  E-value=0.84  Score=33.75  Aligned_cols=62  Identities=10%  Similarity=0.099  Sum_probs=27.8

Q ss_pred             hCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCC-----CHHHHHHHHhcCcccccChhhHHHHHHHHHH
Q 040780           19 KHLYSSAIFFADKVAALTNDPADVYMQAQALFLGR-----HYRRAFHLLNASKIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~-----~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~   84 (95)
                      .+.++.|+-|-+|.... ++++..+.+|.+|+ .|     ++..|+.++++.-  ..++...|-.|.++..
T Consensus       264 ~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          264 LGDVEQMMKYLDNGRAA-DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYRR  330 (452)
T ss_dssp             GCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHC
Confidence            44444555554444322 34444445554444 33     4555555544432  3344444444444433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.25  E-value=1  Score=36.68  Aligned_cols=58  Identities=17%  Similarity=0.156  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcCC-chhHHHHHHHHhhCCCHHHHHHHHhcCc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTND-PADVYMQAQALFLGRHYRRAFHLLNASK   66 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~~~~llA~~l~~~~~~~~A~~ll~~~~   66 (95)
                      |..-++-.+.++.|+-|+=.|.|.+...|+ -..=+.||.||...|+|..|.-.|.+.+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            445566678899999999999999999984 5677899999999999999999998864

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.21  E-value=0.79  Score=29.92  Aligned_cols=57  Identities=12%  Similarity=0.018  Sum_probs=43.8

Q ss_pred             CCchhHHHHHHHHhhCCCHH---HHHHHHhcCc-c-cccChhhHHHHHHHHHHcccHHHHHh
Q 040780           37 NDPADVYMQAQALFLGRHYR---RAFHLLNASK-I-VLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        37 ~~~~~~~llA~~l~~~~~~~---~A~~ll~~~~-l-~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      +++.+.|-+|-|+.++++..   +++.++..-- . ....-.|.|..|-.++++|+|++|..
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~   99 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR   99 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHH
Confidence            58889999999999998773   5677765410 0 11235799999999999999999875

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=90.93  E-value=1.5  Score=32.33  Aligned_cols=60  Identities=18%  Similarity=0.045  Sum_probs=25.7

Q ss_pred             ChhhHHHHHHHHhhhcCCchhHHHHHHH-H--hhCCCHHHHHHHHhcCcccccChhhHHHHHHHHH
Q 040780           21 LYSSAIFFADKVAALTNDPADVYMQAQA-L--FLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus        21 ~y~~AiF~Aekl~a~~~~~~~~~llA~~-l--~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~   83 (95)
                      .++.|+.|-++..  .++++..+.+|.+ +  ...|++.+|+.++++. ....++...+-.|.++.
T Consensus       232 d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A-a~~g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          232 DEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNG-RAADQPRAELLLGKLYY  294 (452)
T ss_dssp             CHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHH
Confidence            3444444444443  3344444444444 2  2344445554444432 11223444444444444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.42  E-value=0.48  Score=33.55  Aligned_cols=76  Identities=14%  Similarity=0.220  Sum_probs=53.2

Q ss_pred             hCChhhHHHHHHHHhhhcC---C----chhHHHHHHHHhhCCCHHHHHHHHhcC-----ccc--ccChhhHHHHHHHHHH
Q 040780           19 KHLYSSAIFFADKVAALTN---D----PADVYMQAQALFLGRHYRRAFHLLNAS-----KIV--LRDLRFRYLAAKCLEE   84 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~---~----~~~~~llA~~l~~~~~~~~A~~ll~~~-----~l~--~~~~~c~yL~A~c~~~   84 (95)
                      .+.++.|+.+.++.....+   +    ......+|.+++..|+|..|..++++.     +..  .........-++++..
T Consensus       108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
T 4b4t_Q          108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK  187 (434)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            3567777777777766652   1    124456899999999999999888642     111  1123466777999999


Q ss_pred             cccHHHHHhc
Q 040780           85 LKEWEQCLSM   94 (95)
Q Consensus        85 l~~~~eal~~   94 (95)
                      +|+|++|...
T Consensus       188 ~~~~~~A~~~  197 (434)
T 4b4t_Q          188 LRNLAKSKAS  197 (434)
T ss_dssp             TTCHHHHHHH
T ss_pred             hCcHHHHHHH
Confidence            9999998754

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=90.24  E-value=2.3  Score=26.87  Aligned_cols=86  Identities=14%  Similarity=0.056  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHH
Q 040780            3 EEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKC   81 (95)
Q Consensus         3 ~~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c   81 (95)
                      -++...|-++---.--.|..+.|.-.||=+-.... .+-|-+. ..++...|.|.+|..+.+...    .|..--++|.|
T Consensus         3 ~~l~~lLAE~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc   77 (115)
T 2uwj_G            3 TSLIRELAELALAGSGQHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC   77 (115)
T ss_dssp             CHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH
Confidence            34555566666666778999999999999877766 5555544 778999999999999998852    56666788999


Q ss_pred             HHHcccHHHHHh
Q 040780           82 LEELKEWEQCLS   93 (95)
Q Consensus        82 ~~~l~~~~eal~   93 (95)
                      -.++|.-.++..
T Consensus        78 e~rlGl~s~le~   89 (115)
T 2uwj_G           78 EWHLGLGAALDR   89 (115)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHhcccHHHHHH
Confidence            999998777654

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=89.90  E-value=2.5  Score=26.75  Aligned_cols=85  Identities=15%  Similarity=-0.010  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHH
Q 040780            4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~   82 (95)
                      ++...|-++---.--.|..+.|.-.||=+-.... .+-|-+. ..++...|.|.+|..+.+...    .|..--++|.|-
T Consensus         5 ~l~~lLAE~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce   79 (116)
T 2p58_C            5 KLNVLLAEIALIGTGNHYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE   79 (116)
T ss_dssp             CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH
Confidence            3444555666666678999999999999877766 5555544 778999999999999999852    566667889999


Q ss_pred             HHcccHHHHHh
Q 040780           83 EELKEWEQCLS   93 (95)
Q Consensus        83 ~~l~~~~eal~   93 (95)
                      .++|.-.++..
T Consensus        80 ~rlGl~s~le~   90 (116)
T 2p58_C           80 YRLGLGSALES   90 (116)
T ss_dssp             HHHTCHHHHHH
T ss_pred             HhcccHHHHHH
Confidence            99998777654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=89.65  E-value=1.3  Score=33.24  Aligned_cols=50  Identities=8%  Similarity=-0.071  Sum_probs=41.5

Q ss_pred             HHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780           16 CVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      .+-.++++.|+=+.+|.++++++.....++|.++...|++.+|...+.+.
T Consensus       287 ~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~A  336 (372)
T 3ly7_A          287 ALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTA  336 (372)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45579999999999999999877666678899999999999998887653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.13  E-value=1.4  Score=36.34  Aligned_cols=54  Identities=22%  Similarity=0.172  Sum_probs=40.3

Q ss_pred             CCchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           37 NDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        37 ~~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      ..++....++..+...|+|.-|..++.=.   ..++...|+.|+|+++.|++++|..
T Consensus       808 ~~~~~~~~l~~~L~~~~~~~~a~eL~~~~---~~t~~~~yv~gr~~L~~ge~~~A~~  861 (950)
T 4gq2_M          808 TENDLVTELVEKLFLFKQYNACMQLIGWL---NSDPIAVYLKALIYLKSKEAVKAVR  861 (950)
T ss_dssp             SSCCHHHHHHHHHHHTTCHHHHHHHGGGC---CSSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCccHHHHHHHHHHhcHHHHHHHHHhhc---CCChHHHHHHHHHHHHcCCHHHHHH
Confidence            34555555667777788888777766543   3566778999999999999999875

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.98  E-value=2.1  Score=30.19  Aligned_cols=88  Identities=10%  Similarity=-0.017  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHhhhcCCch-------hHHHHHHHHhhCCCHHHHHHHHhcC-------cccccCh
Q 040780            7 EKLRGVVRDCVSKHLYSSAIFFADKVAALTNDPA-------DVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDL   72 (95)
Q Consensus         7 ~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~-------~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~   72 (95)
                      +-+..+..-+..+++|+.|+-+-.++....+...       -...++.++...|++..|+.+.+..       +-...-.
T Consensus        56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  135 (434)
T 4b4t_Q           56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH  135 (434)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence            3467788889999999999999988887764221       1234577778889999998877542       1111123


Q ss_pred             hhHHHHHHHHHHcccHHHHHhc
Q 040780           73 RFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        73 ~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+..-.|..+.+.|+|++|+..
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~  157 (434)
T 4b4t_Q          136 SLSIKLATLHYQKKQYKDSLAL  157 (434)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHccChHHHHHH
Confidence            4556679999999999999865

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=87.83  E-value=0.6  Score=30.88  Aligned_cols=45  Identities=11%  Similarity=0.172  Sum_probs=38.0

Q ss_pred             ChhhHHHHHHHHhhhc-C--CchhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780           21 LYSSAIFFADKVAALT-N--DPADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus        21 ~y~~AiF~Aekl~a~~-~--~~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      ..+.||..=+.++..+ |  +.+.+|.+|..+++.|+|.+|...++.-
T Consensus        50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l   97 (152)
T 1pc2_A           50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL   97 (152)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            4557888888888887 4  5789999999999999999999988763

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=87.79  E-value=2.2  Score=37.74  Aligned_cols=71  Identities=17%  Similarity=0.155  Sum_probs=54.0

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHH-HHHh-hCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHH
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQA-QALF-LGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWE   89 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA-~~l~-~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~   89 (95)
                      +-.-+++.++|+.|+-.-+|.-        .+..| ..++ ..|++.+|+.+..+.    ..+..-+-.|+++.+.|+|+
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~--------~~~~A~~VLie~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFD--------VNTSAVQVLIEHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcC--------CHHHHHHHHHHHHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHH
Confidence            3445777888999888888851        23332 4445 889999999999874    34666778899999999999


Q ss_pred             HHHhc
Q 040780           90 QCLSM   94 (95)
Q Consensus        90 eal~~   94 (95)
                      ||++.
T Consensus      1123 EAIds 1127 (1630)
T 1xi4_A         1123 EAIDS 1127 (1630)
T ss_pred             HHHHH
Confidence            99874

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=87.66  E-value=6.9  Score=29.72  Aligned_cols=86  Identities=13%  Similarity=0.000  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhc--CCchhHHHHHHHHhhCCCHHHHHHHHhc---CcccccChhhHHHHHHHHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALT--NDPADVYMQAQALFLGRHYRRAFHLLNA---SKIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~--~~~~~~~llA~~l~~~~~~~~A~~ll~~---~~l~~~~~~c~yL~A~c~~   83 (95)
                      ...+|.-+...+.++.|.-+-+.+....  |+..+--.+-..+...|+...|..+++.   .|+. .+....-..-.+|.
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~-Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV-PEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHh
Confidence            5678888999999999998888887654  3433444556778899999999998864   3432 23334444556778


Q ss_pred             HcccHHHHHhcC
Q 040780           84 ELKEWEQCLSML   95 (95)
Q Consensus        84 ~l~~~~eal~~L   95 (95)
                      +.|++++|..+|
T Consensus       187 ~~g~~d~A~~ll  198 (501)
T 4g26_A          187 DTKNADKVYKTL  198 (501)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             hCCCHHHHHHHH
Confidence            899999998764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=85.79  E-value=2.2  Score=31.61  Aligned_cols=71  Identities=11%  Similarity=-0.033  Sum_probs=42.9

Q ss_pred             hHHHHHHHHhh-hcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccCh-hhHHHHHHHHHHcccHHHHHhc
Q 040780           24 SAIFFADKVAA-LTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDL-RFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        24 ~AiF~Aekl~a-~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~-~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .|+-..+|.+. ..| ++.--+.+|..+...|++.+|..+.++.- +.+.++ ..-..+++.....|++++|+.+
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~  378 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI  378 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence            67777788775 565 34444556777777888888877776531 112222 2334456666667777766553

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=85.10  E-value=0.92  Score=30.06  Aligned_cols=45  Identities=11%  Similarity=0.099  Sum_probs=39.2

Q ss_pred             ChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCC-----------CHHHHHHHHhcC
Q 040780           21 LYSSAIFFADKVAALTN-DPADVYMQAQALFLGR-----------HYRRAFHLLNAS   65 (95)
Q Consensus        21 ~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~-----------~~~~A~~ll~~~   65 (95)
                      +++.|+-.-++.+.++| .++..|.+|.+|+..|           ++..|+..+++.
T Consensus        61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA  117 (158)
T 1zu2_A           61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA  117 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH
Confidence            37899999999999997 6778889999999875           899999988764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.35  E-value=2.4  Score=35.47  Aligned_cols=53  Identities=23%  Similarity=0.172  Sum_probs=39.5

Q ss_pred             CchhHHHHHHHHhhCCCHHHHHHHHhcCcccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           38 DPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      ..+-+-.+...+...|+|.-+..++.=.   ..++..+|+.|+|+++.|++++|..
T Consensus       811 ~~~~~~~l~~~l~~~~~~~~~~~l~~~~---~~~~~~~yl~g~~~L~~ge~~~A~~  863 (1139)
T 4fhn_B          811 ENDLVTELVEKLFLFKQYNACMQLIGWL---NSDPIAVYLKALIYLKSKEAVKAVR  863 (1139)
T ss_dssp             CSCHHHHHHHHHHHHSCTTHHHHHHHHS---CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cchhHHHHHHHHHHhhhHHHHHHHhhhc---cCCcHHHHHHHHHHHhcCCHHHHHH
Confidence            3444556777788888888777766432   4567788999999999999999875

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=83.50  E-value=2  Score=27.50  Aligned_cols=40  Identities=13%  Similarity=0.251  Sum_probs=31.5

Q ss_pred             HHHHHHHHhhhc-C--CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           25 AIFFADKVAALT-N--DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        25 AiF~Aekl~a~~-~--~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +|.+=+.++..+ |  .-+-+|.+|..+|+.|+|.+|...++.
T Consensus        57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~   99 (126)
T 1nzn_A           57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG   99 (126)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            666666666654 2  456899999999999999999887765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=83.13  E-value=3.6  Score=31.60  Aligned_cols=61  Identities=10%  Similarity=0.089  Sum_probs=27.9

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhh
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRF   74 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c   74 (95)
                      .++.-|++.++|+-|.-.+..   +...|+.+--+..+|...|++..|+.++++. ++...|.+.
T Consensus       182 ~v~~aCv~~~ef~lA~~~~l~---L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~  243 (449)
T 1b89_A          182 EVCFACVDGKEFRLAQMCGLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM  243 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHTTTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHH---HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHH
Confidence            334444444444444322222   1123444444555566666666666655543 333444443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=82.59  E-value=8.8  Score=25.74  Aligned_cols=70  Identities=13%  Similarity=0.067  Sum_probs=50.4

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC----Cc----------------------hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN----DP----------------------ADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~----~~----------------------~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      -+..-...+++|..|+=.-++++.+.+    ++                      +=-|..|.|+...|++..|+..+++
T Consensus        68 ~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A           68 YHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            334445567777777777766544431    11                      3349999999999999999999999


Q ss_pred             CcccccChhhHHHHHH
Q 040780           65 SKIVLRDLRFRYLAAK   80 (95)
Q Consensus        65 ~~l~~~~~~c~yL~A~   80 (95)
                      -+...+.+..-.+.|+
T Consensus       148 Ip~k~Rt~kvnm~Lak  163 (167)
T 3ffl_A          148 IPSRQRTPKINMLLAN  163 (167)
T ss_dssp             SCGGGCCHHHHHHHHH
T ss_pred             CCchhcCHHHHHHHHH
Confidence            7666778887777766

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=80.80  E-value=5.8  Score=28.38  Aligned_cols=73  Identities=4%  Similarity=-0.096  Sum_probs=54.5

Q ss_pred             hhhHHHHHHHHhhhcCCchhHH-HHHHHHhhCCCHHHH-HHHHhcC-cc---cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           22 YSSAIFFADKVAALTNDPADVY-MQAQALFLGRHYRRA-FHLLNAS-KI---VLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        22 y~~AiF~Aekl~a~~~~~~~~~-llA~~l~~~~~~~~A-~~ll~~~-~l---~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ++.++-+.++++..+|+..+++ -+..++-..|+...+ ..+..+. .+   ..+++...++.|.++.+.|+.++|+.+
T Consensus       202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            8899999999999998777777 446677777775543 3355442 11   256778889999999999999999864

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=80.50  E-value=2.9  Score=27.50  Aligned_cols=41  Identities=7%  Similarity=0.059  Sum_probs=32.5

Q ss_pred             hHHHHHHHHhhhcC--CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           24 SAIFFADKVAALTN--DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        24 ~AiF~Aekl~a~~~--~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      .+|.+-|.++..++  .-+-+|.+|..+|+.|+|.+|...++.
T Consensus        60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~  102 (144)
T 1y8m_A           60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT  102 (144)
T ss_dssp             HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            45666666666554  467899999999999999999887765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=80.17  E-value=11  Score=29.03  Aligned_cols=78  Identities=4%  Similarity=-0.046  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcCCchhHHHH-HHHHhhCC-CHHHHHHHHhcC-cccccChhhHHHHHHHHHH
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTNDPADVYMQ-AQALFLGR-HYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEE   84 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~ll-A~~l~~~~-~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~   84 (95)
                      .-|.|+-..+....|+.|+-+.+|++.+++....+|-+ +-++...| .+.+++...++. ..+..+...-+-.+..+.+
T Consensus       111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence            34556665554447799999999999998755555544 66777778 888888877654 2223333333333444444


Q ss_pred             c
Q 040780           85 L   85 (95)
Q Consensus        85 l   85 (95)
                      +
T Consensus       191 l  191 (567)
T 1dce_A          191 L  191 (567)
T ss_dssp             H
T ss_pred             h
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.82
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.72
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.63
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.63
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.32
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.3
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.26
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.22
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.11
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.05
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.05
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.98
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.95
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.88
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.79
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.74
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.72
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.64
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.64
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.5
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.22
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.21
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.15
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.12
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.08
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.92
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.92
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.83
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.75
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.75
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.71
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.66
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.65
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	96.39
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	96.29
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.24
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.09
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	95.98
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	94.82
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	94.51
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	94.34
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.66
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	92.63
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	92.05
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	89.34
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	89.18
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	88.83
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	83.21

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.6e-08  Score=62.03  Aligned_cols=90  Identities=13%  Similarity=0.042  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      .++.|+..-..++..+.|+.|+..-++++..+| ++...+.+|.|++..|++..|+...++. .+.+.++...+-.|.|+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            467788889999999999999999999999998 6667788899999999999999987654 34467888899999999


Q ss_pred             HHcccHHHHHhc
Q 040780           83 EELKEWEQCLSM   94 (95)
Q Consensus        83 ~~l~~~~eal~~   94 (95)
                      ..+|+|++|+..
T Consensus        82 ~~~~~~~~A~~~   93 (117)
T d1elwa_          82 EFLNRFEEAKRT   93 (117)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHccCHHHHHHH
Confidence            999999999864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=7.1e-08  Score=61.87  Aligned_cols=89  Identities=8%  Similarity=0.104  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~   83 (95)
                      .+.|+..=..+...+.|+.|+-+-++++.++| ++...+-+|.||...|+|..|+..+++. .+.+.++...+-.|.++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            35677777888999999999999999999997 5666677899999999999999988765 345677888899999999


Q ss_pred             HcccHHHHHhc
Q 040780           84 ELKEWEQCLSM   94 (95)
Q Consensus        84 ~l~~~~eal~~   94 (95)
                      ++|+|++|+..
T Consensus        84 ~l~~~~~A~~~   94 (201)
T d2c2la1          84 EMESYDEAIAN   94 (201)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HCCCHHHHHHH
Confidence            99999999864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.8e-07  Score=59.40  Aligned_cols=89  Identities=17%  Similarity=0.137  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHH
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLE   83 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~   83 (95)
                      .+.|+..=..+...++|+.|+-+-++++.++| ++...+.+|.|++..|++..|+..+++. .+.+.+....+..|.|+.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            45677777788999999999999999999997 6777788999999999999999988764 345678888899999999


Q ss_pred             HcccHHHHHhc
Q 040780           84 ELKEWEQCLSM   94 (95)
Q Consensus        84 ~l~~~~eal~~   94 (95)
                      .+|+|++|+..
T Consensus        90 ~~g~~~eA~~~  100 (159)
T d1a17a_          90 ALGKFRAALRD  100 (159)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HcCCHHHHHHH
Confidence            99999999864

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.63  E-value=8.2e-08  Score=58.42  Aligned_cols=83  Identities=11%  Similarity=-0.051  Sum_probs=73.1

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ   90 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e   90 (95)
                      -..+..++.++.|+..-++++..+| +++..+.+|.++...|++..|+..+++. .+.+.++...+..|.++...|++++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~  102 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA  102 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHH
Confidence            4457889999999999999999997 6788888999999999999999988764 3456788899999999999999999


Q ss_pred             HHhcC
Q 040780           91 CLSML   95 (95)
Q Consensus        91 al~~L   95 (95)
                      |++.|
T Consensus       103 A~~~l  107 (112)
T d1hxia_         103 ALASL  107 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98753

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.2e-06  Score=59.03  Aligned_cols=82  Identities=9%  Similarity=-0.013  Sum_probs=70.6

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ   90 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e   90 (95)
                      -..+...|+|+.|+=..++++..+| +++..+.+|.+++..|+|..|...+++. .+.+.++...+..|.++.++|++++
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~   85 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence            3456788999999999999999997 6778899999999999999999988764 2345677888899999999999999


Q ss_pred             HHhc
Q 040780           91 CLSM   94 (95)
Q Consensus        91 al~~   94 (95)
                      |+..
T Consensus        86 A~~~   89 (388)
T d1w3ba_          86 AIEH   89 (388)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            9864

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=3.6e-06  Score=55.29  Aligned_cols=86  Identities=10%  Similarity=-0.145  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +-.+-.-+...++|+.|+-.-++++.++| +++..+.+|.++...|++..|+..+++. .+.+.++...+-.|.++..+|
T Consensus        40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  119 (259)
T d1xnfa_          40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG  119 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            33444567889999999999999999997 6777778999999999999999988764 234566777888899999999


Q ss_pred             cHHHHHhc
Q 040780           87 EWEQCLSM   94 (95)
Q Consensus        87 ~~~eal~~   94 (95)
                      ++++|+..
T Consensus       120 ~~~~A~~~  127 (259)
T d1xnfa_         120 RDKLAQDD  127 (259)
T ss_dssp             CHHHHHHH
T ss_pred             hHHHHHHH
Confidence            99999864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2e-06  Score=58.31  Aligned_cols=82  Identities=6%  Similarity=-0.087  Sum_probs=70.8

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ   90 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e   90 (95)
                      -..++..++|+.|+-..++++..+| +++..+.+|.+++..|++..|+..+++. .+.+.++...+..|.++...+++++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  105 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ  105 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            3457889999999999999999997 6778899999999999999999888763 2345677888889999999999999


Q ss_pred             HHhc
Q 040780           91 CLSM   94 (95)
Q Consensus        91 al~~   94 (95)
                      |+..
T Consensus       106 A~~~  109 (323)
T d1fcha_         106 ACEI  109 (323)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            9864

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3.8e-06  Score=52.05  Aligned_cols=86  Identities=19%  Similarity=0.095  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCH---HHHHHHHhcCcc-c--ccChhhHHHHHHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHY---RRAFHLLNASKI-V--LRDLRFRYLAAKC   81 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~---~~A~~ll~~~~l-~--~~~~~c~yL~A~c   81 (95)
                      +..++...+....++.|+-.-++.+.++| +++..|-+|.||..+++.   .+|+.++++.-. .  ..+..+.|..|.|
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            56778888899999999999999999997 789999999999986655   569998886311 1  2234588999999


Q ss_pred             HHHcccHHHHHhc
Q 040780           82 LEELKEWEQCLSM   94 (95)
Q Consensus        82 ~~~l~~~~eal~~   94 (95)
                      +.++|+|++|+..
T Consensus        82 y~~~g~~~~A~~~   94 (122)
T d1nzna_          82 NYRLKEYEKALKY   94 (122)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHHhhhHHHHHH
Confidence            9999999999864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.1e-05  Score=54.51  Aligned_cols=84  Identities=13%  Similarity=0.018  Sum_probs=70.2

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      .+..-+...++++.|+-+-++++..+| +++..+.+|.+++..|++..|+...++. .+.+.++...+-.|.++.++|++
T Consensus       177 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  256 (323)
T d1fcha_         177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH  256 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             hhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCH
Confidence            344556788999999999999999997 5666678999999999999999888763 23456788889999999999999


Q ss_pred             HHHHhc
Q 040780           89 EQCLSM   94 (95)
Q Consensus        89 ~eal~~   94 (95)
                      ++|+..
T Consensus       257 ~~A~~~  262 (323)
T d1fcha_         257 REAVEH  262 (323)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.6e-05  Score=49.95  Aligned_cols=81  Identities=9%  Similarity=0.012  Sum_probs=54.2

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcCC-ch--------------hHH-HHHHHHhhCCCHHHHHHHHhcC-cccccChhhHH
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTND-PA--------------DVY-MQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRY   76 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~~-~~--------------~~~-llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~y   76 (95)
                      ..+..++.|+.|+-+=++.+...+. +.              .+| -+|.|++..|+|.+|+..+++. .+.+.++.+.+
T Consensus        21 ~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~  100 (170)
T d1p5qa1          21 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS  100 (170)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhH
Confidence            3566777888888777777766541 10              222 2677888888888887766553 23356777777


Q ss_pred             HHHHHHHHcccHHHHHhc
Q 040780           77 LAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        77 L~A~c~~~l~~~~eal~~   94 (95)
                      ..|.|+..+|+|++|+..
T Consensus       101 ~~g~~~~~~g~~~~A~~~  118 (170)
T d1p5qa1         101 RRGEAHLAVNDFELARAD  118 (170)
T ss_dssp             HHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHH
Confidence            778888888888777653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.05  E-value=3.5e-05  Score=49.08  Aligned_cols=89  Identities=11%  Similarity=0.078  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcCC---c--h----------hHHH-HHHHHhhCCCHHHHHHHHhcC-ccc
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTND---P--A----------DVYM-QAQALFLGRHYRRAFHLLNAS-KIV   68 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~---~--~----------~~~l-lA~~l~~~~~~~~A~~ll~~~-~l~   68 (95)
                      ++.+++.=......+.|+.|+-.-++++...+.   .  +          .+|. +|.|++..|+|..|+...++. .+.
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            566777777888899999999998888766531   1  0          2222 789999999999998877664 345


Q ss_pred             ccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           69 LRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        69 ~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +.+..+.|..|.|+..+|+|++|+..
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~  120 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGD  120 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            67888899999999999999998763

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.98  E-value=4.1e-05  Score=48.49  Aligned_cols=82  Identities=13%  Similarity=0.056  Sum_probs=66.4

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ   90 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e   90 (95)
                      -.-+...++|+.|+...++++.++| ++...+.+|.+++..|+|..|...+++. .+.+.+.......++|..++++.++
T Consensus        84 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1          84 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3445678999999999999999997 7888999999999999999998887754 2334566677777888888888888


Q ss_pred             HHhc
Q 040780           91 CLSM   94 (95)
Q Consensus        91 al~~   94 (95)
                      ....
T Consensus       164 ~~k~  167 (169)
T d1ihga1         164 KEKA  167 (169)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            7654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4.9e-05  Score=48.59  Aligned_cols=79  Identities=11%  Similarity=0.085  Sum_probs=66.6

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQ   90 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~e   90 (95)
                      -.-++..++|+.|+-++++++.++| ++...+.+|.|++..|+|..|+..+++. .+.+.++......+.+.-++++..+
T Consensus        69 a~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  148 (170)
T d1p5qa1          69 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA  148 (170)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3447889999999999999999997 7889999999999999999999988875 3445688888888888777766554


Q ss_pred             H
Q 040780           91 C   91 (95)
Q Consensus        91 a   91 (95)
                      .
T Consensus       149 ~  149 (170)
T d1p5qa1         149 R  149 (170)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.2e-05  Score=51.30  Aligned_cols=79  Identities=6%  Similarity=-0.073  Sum_probs=65.8

Q ss_pred             HHHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHH
Q 040780           13 VRDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQC   91 (95)
Q Consensus        13 v~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~ea   91 (95)
                      -..+.+.+.|+.|+-.-+++  .++++...|-+|.|++..|+|..|+...++. .+.+.++...+..|.|+.++|+|++|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence            34568899999999777653  2357778899999999999999999988764 34567888889999999999999999


Q ss_pred             Hh
Q 040780           92 LS   93 (95)
Q Consensus        92 l~   93 (95)
                      +.
T Consensus        90 ~~   91 (192)
T d1hh8a_          90 IK   91 (192)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=5e-05  Score=46.41  Aligned_cols=87  Identities=14%  Similarity=0.150  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChh-------hHHHH
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLR-------FRYLA   78 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~-------c~yL~   78 (95)
                      +.+..=..+...++|+.|+-.-++++.++| ++...+-+|.|++..|+|..|+..++.. .+.+.++.       +.+-.
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            344555567889999999999999999997 5666677999999999999999887653 12223332       44456


Q ss_pred             HHHHHHcccHHHHHhc
Q 040780           79 AKCLEELKEWEQCLSM   94 (95)
Q Consensus        79 A~c~~~l~~~~eal~~   94 (95)
                      |.+...+++|++|+..
T Consensus        86 g~~~~~~~~~~~A~~~  101 (128)
T d1elra_          86 GNSYFKEEKYKDAIHF  101 (128)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHH
Confidence            6777888899998864

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=8.4e-05  Score=49.60  Aligned_cols=78  Identities=12%  Similarity=-0.023  Sum_probs=36.9

Q ss_pred             HHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           16 CVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        16 ~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      +...++++.|+-+-+++....| ++...+.++.++...|++..|+..+++. .+.+.++...+..|.++.++|++++|+.
T Consensus       281 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  360 (388)
T d1w3ba_         281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM  360 (388)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            3334444444444444444443 3334444455555555555555544432 1223344445555555555555555553

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.74  E-value=0.00023  Score=44.54  Aligned_cols=86  Identities=12%  Similarity=0.037  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC---C-ch------------hHH-HHHHHHhhCCCHHHHHHHHhcC-ccccc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN---D-PA------------DVY-MQAQALFLGRHYRRAFHLLNAS-KIVLR   70 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~---~-~~------------~~~-llA~~l~~~~~~~~A~~ll~~~-~l~~~   70 (95)
                      ++.-=......+.|+.|+-.-++++...+   + ++            ++| -+|.||+..|+|.+|+...++. .+.+.
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~   99 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN   99 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence            44444567788999999977777776553   1 11            122 2789999999999998877763 34467


Q ss_pred             ChhhHHHHHHHHHHcccHHHHHhc
Q 040780           71 DLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        71 ~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +..+.|-.|.|+..+|+|++|+..
T Consensus       100 ~~ka~~~~g~~~~~lg~~~~A~~~  123 (153)
T d2fbna1         100 NVKALYKLGVANMYFGFLEEAKEN  123 (153)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhHHhHHHHHHcCCHHHHHHH
Confidence            788899999999999999999864

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.72  E-value=0.00014  Score=45.94  Aligned_cols=89  Identities=18%  Similarity=0.130  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-----------------CchhHHHHHHHHhhCCCHHHHHHHHhcC-cc
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-----------------DPADVYMQAQALFLGRHYRRAFHLLNAS-KI   67 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-----------------~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l   67 (95)
                      .+.++.........+.|+.|+-.-++.+...+                 ......-+|.|++..|+|..|+...++. .+
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            44567777788889999999888888765431                 0112344799999999999999988764 34


Q ss_pred             cccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           68 VLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        68 ~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .+.++...+-.|.++..+|+|++|+..
T Consensus       107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~  133 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLKEYDQALAD  133 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhhhhHHHhHHHHHHHccCHHHHHHH
Confidence            567888999999999999999999864

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.64  E-value=0.00032  Score=44.35  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=64.7

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHH
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQC   91 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~ea   91 (95)
                      .-+...+.|+.|+-++++++.++| ++...|..|.|++..|+|.+|...+++. .+.+.+....-..+.+..+++++++.
T Consensus        72 ~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~  151 (168)
T d1kt1a1          72 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER  151 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHH
Confidence            346789999999999999999997 7889999999999999999999988764 24456777777778888777776653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00027  Score=44.01  Aligned_cols=86  Identities=14%  Similarity=0.130  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcCc-ccccChhhHHHHHHHHH--
Q 040780            8 KLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNASK-IVLRDLRFRYLAAKCLE--   83 (95)
Q Consensus         8 ~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~--   83 (95)
                      -+..+-.-++..++++.|+-..++++.++| ++...+.+|.|++..|+|.+|+..+++.- +.+.++.+....++|..  
T Consensus        46 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~  125 (159)
T d1a17a_          46 YYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  125 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            344566778889999999999999999997 66888999999999999999998887642 33456777777777754  


Q ss_pred             HcccHHHHHh
Q 040780           84 ELKEWEQCLS   93 (95)
Q Consensus        84 ~l~~~~eal~   93 (95)
                      +.+.+++++.
T Consensus       126 ~~~~~~~a~~  135 (159)
T d1a17a_         126 KQKAFERAIA  135 (159)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            4455777653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.57  E-value=0.00011  Score=46.01  Aligned_cols=77  Identities=21%  Similarity=0.178  Sum_probs=62.9

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccH
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEW   88 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~   88 (95)
                      +-..++..+.|+.|+-.+++++.++| +....|..|.|++..|+|..|+..+++. .+.+.+.......+.|.-++++.
T Consensus        73 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          73 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            44456889999999999999999997 7789999999999999999999988764 24456677777777777666543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00023  Score=46.16  Aligned_cols=83  Identities=11%  Similarity=0.076  Sum_probs=64.3

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-------ccc----------ccChh
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-------KIV----------LRDLR   73 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-------~l~----------~~~~~   73 (95)
                      +=.-+...++|+.|+-+-+|.+.++| .+...+.+|.|++..|+|..|..-.++.       ...          .....
T Consensus        42 lG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e  121 (192)
T d1hh8a_          42 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE  121 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH
T ss_pred             HHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHH
Confidence            33446789999999999999999997 6777788999999999999998765542       100          01123


Q ss_pred             hHHHHHHHHHHcccHHHHHhc
Q 040780           74 FRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        74 c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ..|-.|.++.++++|++|+..
T Consensus       122 ~~~n~a~~~~~~~~~~~A~~~  142 (192)
T d1hh8a_         122 VLYNIAFMYAKKEEWKKAEEQ  142 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHH
Confidence            456779999999999999864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00038  Score=43.68  Aligned_cols=59  Identities=20%  Similarity=0.219  Sum_probs=49.8

Q ss_pred             cCCchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           36 TNDPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        36 ~~~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      +|+.+.+--.|..+|..|+|..|+...++. .+.+.++...+-.|.|+.++|+|++|+..
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~   60 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD   60 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHH
Confidence            356677888899999999999999988764 34567888888899999999999999864

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00046  Score=40.06  Aligned_cols=56  Identities=5%  Similarity=0.093  Sum_probs=35.9

Q ss_pred             CchhHHHHHHHHhhCCCHHHHHHHHhcCc-c-------cccChhhHHHHHHHHHHcccHHHHHh
Q 040780           38 DPADVYMQAQALFLGRHYRRAFHLLNASK-I-------VLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        38 ~~~~~~llA~~l~~~~~~~~A~~ll~~~~-l-------~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      ++++.|-+|..+|..|+|..|+..+++.- +       ......+.+-.|.|+.++|++++|+.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~   67 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL   67 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHH
Confidence            35677778888888888887777665420 0       01113445556778888888887765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00048  Score=44.62  Aligned_cols=75  Identities=7%  Similarity=-0.101  Sum_probs=58.1

Q ss_pred             CChhhHHHHHHHHhhhcC-----CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           20 HLYSSAIFFADKVAALTN-----DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        20 ~~y~~AiF~Aekl~a~~~-----~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      .+++.|+--.+.+++..+     ..+..|.+|.+++..|+|..|+...++. .+.+.++...+..|.++.++|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            345566666677766543     2336677899999999999999987764 3456788899999999999999999986


Q ss_pred             c
Q 040780           94 M   94 (95)
Q Consensus        94 ~   94 (95)
                      .
T Consensus        93 ~   93 (259)
T d1xnfa_          93 A   93 (259)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.12  E-value=0.0014  Score=40.63  Aligned_cols=84  Identities=15%  Similarity=0.089  Sum_probs=61.9

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcCC-ch------------hHHHHHHHHhhCCCHHHHHHHHhcCc--------ccc
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTND-PA------------DVYMQAQALFLGRHYRRAFHLLNASK--------IVL   69 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~------------~~~llA~~l~~~~~~~~A~~ll~~~~--------l~~   69 (95)
                      ...+..+..+.|+.|+-.-++.+.+.++ |+            .-.-+|.||...|+|..|..-.+..-        ...
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            3466778899999999999999999863 21            22347999999999999987665420        000


Q ss_pred             ----cChhhHHHHHHHHHHcccHHHHHhc
Q 040780           70 ----RDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        70 ----~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                          ......+-.|.++.++|+++||+..
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~  122 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPE  122 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHH
Confidence                1122456679999999999999863

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.08  E-value=0.00061  Score=46.84  Aligned_cols=78  Identities=13%  Similarity=0.051  Sum_probs=58.8

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHH
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQC   91 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~ea   91 (95)
                      ++.+..++++.|+-..++.+..+| +++....|+++|...|++.+|...++.. .+.+.+......++......+..+++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            578899999999999999999997 7788899999999999999999888753 12234444444555555554444444

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.003  Score=40.98  Aligned_cols=86  Identities=12%  Similarity=-0.095  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcCC-ch----hHHHHHHHHhhCCCHHHHHHHHhcC-------cccccChhhHH
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTND-PA----DVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLRFRY   76 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~----~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~c~y   76 (95)
                      ......-....+.++.|+-+.++.....+. +.    ..+.+|.+++..|++..|...+++.       +.........+
T Consensus       216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  295 (366)
T d1hz4a_         216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL  295 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence            334455667889999999999998887742 22    3445799999999999999988753       33334456778


Q ss_pred             HHHHHHHHcccHHHHHhc
Q 040780           77 LAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        77 L~A~c~~~l~~~~eal~~   94 (95)
                      ..|.++...|++++|+..
T Consensus       296 ~la~~~~~~g~~~~A~~~  313 (366)
T d1hz4a_         296 LLNQLYWQAGRKSDAQRV  313 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHH
Confidence            889999999999999875

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.92  E-value=0.0082  Score=38.51  Aligned_cols=85  Identities=8%  Similarity=-0.132  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcCCc-----------------------hhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTNDP-----------------------ADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~~~-----------------------~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      +...-......+.++.|+=.-++.+++.+++                       +....++.++...|+|..|+..+++.
T Consensus        14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~a   93 (179)
T d2ff4a2          14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL   93 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            3333456667777777777777777765311                       13455677777777777777766653


Q ss_pred             -cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           66 -KIVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        66 -~l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                       .+++.+.......++++..+|++.||+.
T Consensus        94 l~~~P~~e~~~~~l~~al~~~Gr~~eAl~  122 (179)
T d2ff4a2          94 TFEHPYREPLWTQLITAYYLSDRQSDALG  122 (179)
T ss_dssp             HHHSTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence             2334556666777777777777777765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0075  Score=35.58  Aligned_cols=70  Identities=14%  Similarity=-0.026  Sum_probs=55.0

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHH
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAK   80 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~   80 (95)
                      .+-.-++..+.|+.|+-..++.+.++| ++...+.+|.|+...|+|..|+..+++. .+.+.++....-.++
T Consensus        42 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  113 (117)
T d1elwa_          42 NRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN  113 (117)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             cccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            344556789999999999999999997 7888999999999999999999988764 233455555444333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.75  E-value=0.0045  Score=39.81  Aligned_cols=61  Identities=8%  Similarity=-0.048  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780            4 EEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus         4 ~~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      ..++-+..+....+..+.|+.|+-++++++.++| +++.-..++.++...|++..|+...++
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~  126 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR  126 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4456677888899999999999999999999998 555666779999999999999887765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0039  Score=35.84  Aligned_cols=64  Identities=8%  Similarity=0.058  Sum_probs=48.3

Q ss_pred             HHHHHHHHhCChhhHHHHHHHHhhhcC-C-------chhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhh
Q 040780           11 GVVRDCVSKHLYSSAIFFADKVAALTN-D-------PADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRF   74 (95)
Q Consensus        11 ~~v~~~l~~~~y~~AiF~Aekl~a~~~-~-------~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c   74 (95)
                      .+=..+.+++.|+.|+-|-++++.+.+ +       .+..+-+|.|++..|+|.+|+...++. .+.+.++..
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence            334567889999999999999998873 2       234667999999999999999987764 233455443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0014  Score=39.56  Aligned_cols=51  Identities=8%  Similarity=0.216  Sum_probs=42.7

Q ss_pred             HHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           44 MQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        44 llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      -+|.++|..|+|..|+...++. .+.+.++.+.+-.|.|+..+++|++|+..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~   60 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL   60 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHH
Confidence            4789999999999999877654 34456788888899999999999999863

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.66  E-value=0.0011  Score=41.09  Aligned_cols=69  Identities=9%  Similarity=0.018  Sum_probs=54.3

Q ss_pred             hCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCH----------HHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780           19 KHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHY----------RRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~----------~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      ...|+.|+-..|+++.++| +++..+.+|.+++..+++          ..|+...++. .+.+.++.+.|-.|.++..++
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence            4459999999999999997 788888999999977666          4566655543 345678888899999998765


Q ss_pred             c
Q 040780           87 E   87 (95)
Q Consensus        87 ~   87 (95)
                      +
T Consensus        90 ~   90 (145)
T d1zu2a1          90 F   90 (145)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.65  E-value=0.0028  Score=37.33  Aligned_cols=56  Identities=18%  Similarity=-0.006  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780            9 LRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus         9 Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +..+-.-+...++++.|+-+-++++.++| +++..+.+|.++...|++..|+..+++
T Consensus        53 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~  109 (112)
T d1hxia_          53 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHH
Confidence            34444557889999999999999999997 688889999999999999999999886

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0012  Score=45.50  Aligned_cols=75  Identities=11%  Similarity=-0.000  Sum_probs=32.9

Q ss_pred             hCChhhHHHHHHHHhhhcCCc-hhHHHHHHHHhhCCC-HHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHh
Q 040780           19 KHLYSSAIFFADKVAALTNDP-ADVYMQAQALFLGRH-YRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~~~-~~~~llA~~l~~~~~-~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      +..++.|+-..++++.++|+. ..-+..|.++...|+ +..|+..+++. .+.+++...-+-.|.++.++|+++||+.
T Consensus        56 ~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~  133 (315)
T d2h6fa1          56 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE  133 (315)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             CCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHH
Confidence            344555555555555555422 222333445444432 45554444332 1223344444444444444554444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0097  Score=40.71  Aligned_cols=74  Identities=7%  Similarity=0.023  Sum_probs=63.9

Q ss_pred             ChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           21 LYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        21 ~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      .++.|+-+.++++.++| +....+..|.++...|++.+|+..+++. .+.+++...-+=.|.++.++++|++|+..
T Consensus        93 ~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~  168 (315)
T d2h6fa1          93 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY  168 (315)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHH
Confidence            58999999999999997 6777778899999999999999998875 34566777777789999999999999863

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0089  Score=38.62  Aligned_cols=80  Identities=9%  Similarity=-0.047  Sum_probs=60.1

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcCCch------hHHHHHHHHhhCCCHHHHHHHHhcC-------cccccChhhHHHHHH
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTNDPA------DVYMQAQALFLGRHYRRAFHLLNAS-------KIVLRDLRFRYLAAK   80 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~~~~------~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~~~~c~yL~A~   80 (95)
                      .-.+..|+++.|+-+.++.+...|+.+      ....+|.+++..|++..|...++..       +-........+..+.
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            446889999999999999999886432      4556899999999999999888643       111122345566778


Q ss_pred             HHHHcccHHHHHh
Q 040780           81 CLEELKEWEQCLS   93 (95)
Q Consensus        81 c~~~l~~~~eal~   93 (95)
                      ++...+++.+++.
T Consensus       100 ~~~~~~~~~~a~~  112 (366)
T d1hz4a_         100 ILFAQGFLQTAWE  112 (366)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888899888765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0054  Score=37.13  Aligned_cols=62  Identities=10%  Similarity=0.088  Sum_probs=46.4

Q ss_pred             ChhhHHHHHHHHhhhcCCc---hhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHH
Q 040780           21 LYSSAIFFADKVAALTNDP---ADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCL   82 (95)
Q Consensus        21 ~y~~AiF~Aekl~a~~~~~---~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~   82 (95)
                      .++.|+-.-++++..++++   +..|.+|.|++..|+|.+|...+++. .+.+.+...+.+.+.+-
T Consensus        51 d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          51 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            4456999999999888644   46789999999999999999988874 23455666655554443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.98  E-value=0.0064  Score=41.07  Aligned_cols=84  Identities=6%  Similarity=-0.059  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhCChhhHHHHHHHHhhhcCC-chh-HHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcc
Q 040780           10 RGVVRDCVSKHLYSSAIFFADKVAALTND-PAD-VYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELK   86 (95)
Q Consensus        10 r~~v~~~l~~~~y~~AiF~Aekl~a~~~~-~~~-~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~   86 (95)
                      +.++...+.+++++.|+-+.++.+.++|+ .+. .+..+.++...|++..|+..+++. .+.+.+...-+-.|.++..++
T Consensus       113 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            45555666667789999999999999864 444 356678888999999999888764 334566677777788889999


Q ss_pred             cHHHHHh
Q 040780           87 EWEQCLS   93 (95)
Q Consensus        87 ~~~eal~   93 (95)
                      ++++|+.
T Consensus       193 ~~~~A~~  199 (334)
T d1dcea1         193 PQPDSGP  199 (334)
T ss_dssp             CCCCSSS
T ss_pred             CHHHHHH
Confidence            8877654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.82  E-value=0.13  Score=34.00  Aligned_cols=90  Identities=12%  Similarity=0.054  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHHHHhhhc---CCch----hHHHHHHHHhhCCCHHHHHHHHhcC-------ccccc
Q 040780            5 EIEKLRGVVRDCVSKHLYSSAIFFADKVAALT---NDPA----DVYMQAQALFLGRHYRRAFHLLNAS-------KIVLR   70 (95)
Q Consensus         5 ~~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~---~~~~----~~~llA~~l~~~~~~~~A~~ll~~~-------~l~~~   70 (95)
                      -.+-+...-.-+-..++|+.|+..-+|+..+.   +++.    ...-.|.||...|++..|+...++.       +....
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence            34556666777788999999999999998886   2322    4566799999999999998887753       11111


Q ss_pred             ChhhHHHHHHHHHH-cccHHHHHhc
Q 040780           71 DLRFRYLAAKCLEE-LKEWEQCLSM   94 (95)
Q Consensus        71 ~~~c~yL~A~c~~~-l~~~~eal~~   94 (95)
                      ...+..-.|.++.. +++|++|+..
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~  140 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDC  140 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHH
Confidence            23344455666654 7999999864

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.51  E-value=0.021  Score=35.00  Aligned_cols=75  Identities=8%  Similarity=0.014  Sum_probs=55.1

Q ss_pred             hCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCC-----------HHHHHHHHhcCc-ccccChhhHHHHHHHHHHc
Q 040780           19 KHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRH-----------YRRAFHLLNASK-IVLRDLRFRYLAAKCLEEL   85 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~-----------~~~A~~ll~~~~-l~~~~~~c~yL~A~c~~~l   85 (95)
                      ...++.|+-..++++.++| +++..+.+|.+|+..|+           |..|....++.- +.+.+...+.-.+.|.-..
T Consensus        54 ~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          54 KQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence            3457889999999999997 78889999999987654           677877776642 3345555556666666667


Q ss_pred             ccHHHHHh
Q 040780           86 KEWEQCLS   93 (95)
Q Consensus        86 ~~~~eal~   93 (95)
                      +.+.|+..
T Consensus       134 ~~~~e~~k  141 (145)
T d1zu2a1         134 QLHAEAYK  141 (145)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.34  E-value=0.16  Score=33.54  Aligned_cols=89  Identities=8%  Similarity=-0.080  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhCChhhHHHHHHHHhhhcC---C----chhHHHHHHHHhh-CCCHHHHHHHHhcCc-c------ccc
Q 040780            6 IEKLRGVVRDCVSKHLYSSAIFFADKVAALTN---D----PADVYMQAQALFL-GRHYRRAFHLLNASK-I------VLR   70 (95)
Q Consensus         6 ~~~Lr~~v~~~l~~~~y~~AiF~Aekl~a~~~---~----~~~~~llA~~l~~-~~~~~~A~~ll~~~~-l------~~~   70 (95)
                      ..-+..+-.-+...+.++.|+-.-++.+.+.+   +    .....-+|.+++. .|+|..|+...++.. +      ...
T Consensus        77 a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~  156 (290)
T d1qqea_          77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence            34566666777889999999999999888763   2    2245566777766 599999988876531 0      011


Q ss_pred             ChhhHHHHHHHHHHcccHHHHHhc
Q 040780           71 DLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        71 ~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ...+..-.|.++.++|+|++|+..
T Consensus       157 ~~~~~~~la~~~~~~g~y~~A~~~  180 (290)
T d1qqea_         157 SNKCFIKCADLKALDGQYIEASDI  180 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHcChHHHHHHH
Confidence            233455579999999999999864

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.66  E-value=0.15  Score=31.35  Aligned_cols=57  Identities=14%  Similarity=0.051  Sum_probs=41.9

Q ss_pred             CCchhHHHHHHHHhhCCCH---HHHHHHHhcCc-ccc-cChhhHHHHHHHHHHcccHHHHHh
Q 040780           37 NDPADVYMQAQALFLGRHY---RRAFHLLNASK-IVL-RDLRFRYLAAKCLEELKEWEQCLS   93 (95)
Q Consensus        37 ~~~~~~~llA~~l~~~~~~---~~A~~ll~~~~-l~~-~~~~c~yL~A~c~~~l~~~~eal~   93 (95)
                      +++++-|-+|-|+..+.+.   .+++.+++.-- ..+ .+-.|.|..|-.++++|+|++|..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~   94 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR   94 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3677889999999988666   47777776521 111 234688999999999999998875

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.63  E-value=0.064  Score=35.84  Aligned_cols=83  Identities=10%  Similarity=-0.039  Sum_probs=57.2

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-CchhHHHHHHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHH
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-DPADVYMQAQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWE   89 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-~~~~~~llA~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~   89 (95)
                      .....+..+.++.|+-.-.+.+..++ ++.....++.++...|++..|+..+.+. ...+.+....+..|.++..+|+++
T Consensus       214 ~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  293 (334)
T d1dcea1         214 LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK  293 (334)
T ss_dssp             HHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHH
Confidence            44455667777777777777777764 5666667778888888888888766553 222344555667788888888888


Q ss_pred             HHHhc
Q 040780           90 QCLSM   94 (95)
Q Consensus        90 eal~~   94 (95)
                      +|++.
T Consensus       294 eA~~~  298 (334)
T d1dcea1         294 ETLQY  298 (334)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=92.05  E-value=0.093  Score=35.39  Aligned_cols=49  Identities=16%  Similarity=0.101  Sum_probs=41.0

Q ss_pred             HHHHhhCCCHHHHHHHHhcC-cccccChhhHHHHHHHHHHcccHHHHHhc
Q 040780           46 AQALFLGRHYRRAFHLLNAS-KIVLRDLRFRYLAAKCLEELKEWEQCLSM   94 (95)
Q Consensus        46 A~~l~~~~~~~~A~~ll~~~-~l~~~~~~c~yL~A~c~~~l~~~~eal~~   94 (95)
                      ++-.+..|++..|+..+++. +..+.+...+...++++...|+|++|+..
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~   52 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQ   52 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            34567899999999988764 34567899999999999999999999864

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=89.34  E-value=1.1  Score=26.00  Aligned_cols=73  Identities=12%  Similarity=0.018  Sum_probs=51.8

Q ss_pred             hCChhhHHHHHHHHhhhcCCchhHHHHHHHHhh----CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH----cccHHH
Q 040780           19 KHLYSSAIFFADKVAALTNDPADVYMQAQALFL----GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE----LKEWEQ   90 (95)
Q Consensus        19 ~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~----~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~----l~~~~e   90 (95)
                      ..+++.|+.|-+|.... +++++.+.+|..|+.    ..++.+|..++++.- ...++...+-.|.++..    -+++++
T Consensus        36 ~~~~~~a~~~~~~aa~~-g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~~g~~~a~~~Lg~~y~~G~gv~~d~~~  113 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GLNDQDGCLILGYKQYAGKGVVKNEKQ  113 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             ccCHHHHHHHHhhhhcc-cchhhhhhHHHhhhhccccchhhHHHHHHHhhhh-ccCcchHHHHHHHHHHcCCccCCCHHH
Confidence            34677888888887554 688889999988775    456899999887742 23566666777777766    345766


Q ss_pred             HHh
Q 040780           91 CLS   93 (95)
Q Consensus        91 al~   93 (95)
                      |+.
T Consensus       114 A~~  116 (133)
T d1klxa_         114 AVK  116 (133)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=89.18  E-value=0.51  Score=28.24  Aligned_cols=53  Identities=21%  Similarity=0.137  Sum_probs=42.1

Q ss_pred             HHHHHHHhCChhhHHHHHHHHhhhcC-----Cc-------hhHHHHHHHHhhCCCHHHHHHHHhc
Q 040780           12 VVRDCVSKHLYSSAIFFADKVAALTN-----DP-------ADVYMQAQALFLGRHYRRAFHLLNA   64 (95)
Q Consensus        12 ~v~~~l~~~~y~~AiF~Aekl~a~~~-----~~-------~~~~llA~~l~~~~~~~~A~~ll~~   64 (95)
                      +-.-+...++|+.|+...++.+.+.+     .+       ...+-+|.++...|++..|+...++
T Consensus        61 lg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~  125 (156)
T d2hr2a1          61 LAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK  125 (156)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            34456889999999999999998753     11       1356789999999999999888765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=88.83  E-value=0.37  Score=30.72  Aligned_cols=77  Identities=9%  Similarity=0.084  Sum_probs=54.2

Q ss_pred             HHHHHhCChhhHHHHHHHHhhhcCCchhHHHHHHHHhh----CCCHHHHHHHHhcCcccccChhhHHHHHHHHHH----c
Q 040780           14 RDCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFL----GRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEE----L   85 (95)
Q Consensus        14 ~~~l~~~~y~~AiF~Aekl~a~~~~~~~~~llA~~l~~----~~~~~~A~~ll~~~~l~~~~~~c~yL~A~c~~~----l   85 (95)
                      ......+.|+.|+=|-+|.... ++++..+.||.+++.    ..++..|...++... ...++...+..|.....    -
T Consensus        10 ~~~~~~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~-~~~~~~a~~~l~~~~~~~~~~~   87 (265)
T d1ouva_          10 AKSYKEKDFTQAKKYFEKACDL-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLNYSNGCHLLGNLYYSGQGVS   87 (265)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc-cccccchhhccccccccccccc
Confidence            4556688999999999998544 688899999999987    778999988887642 23455555555555543    2


Q ss_pred             ccHHHHH
Q 040780           86 KEWEQCL   92 (95)
Q Consensus        86 ~~~~eal   92 (95)
                      +..++|+
T Consensus        88 ~~~~~a~   94 (265)
T d1ouva_          88 QNTNKAL   94 (265)
T ss_dssp             CCHHHHH
T ss_pred             hhhHHHH
Confidence            3455554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.21  E-value=0.66  Score=28.24  Aligned_cols=46  Identities=7%  Similarity=-0.003  Sum_probs=37.1

Q ss_pred             CChhhHHHHHHHHhhhcC-C-chhHHHHHHHHhhCCCHHHHHHHHhcC
Q 040780           20 HLYSSAIFFADKVAALTN-D-PADVYMQAQALFLGRHYRRAFHLLNAS   65 (95)
Q Consensus        20 ~~y~~AiF~Aekl~a~~~-~-~~~~~llA~~l~~~~~~~~A~~ll~~~   65 (95)
                      ...+.||-.-+.++..+| + -+-+|.+|..++..|+|.+|...+++.
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~   99 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL   99 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            345668888888887775 3 368899999999999999999988763