Citrus Sinensis ID: 040797

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MAMVYQPSTKPPLSTSFLSSSTHSLNFLSPNLRVGVRHHQYSYLIPKIPSPPCFRIRRNSSSSSSSSSNTPPLPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTEPGDEAIPGVYNDDSAKSFEPDAFCGEPSPP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccEEcEEccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccccccccccccccccccccccccHHHHcccccccccccEEEEccccccccccccccccccccccccHccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEcccHHHHHHHHEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mamvyqpstkpplstsflsssthslnflspnlrvgvrhhqysylipkipsppcfrirrnsssssssssntpplpetecpvpadqqpineyqnlsssfpfswasgdfveYCSRLFVTGASFALFVglpvawfgavgpdseplERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVeyeetgwydgqIWVKTAEVLARDrllgsfsvkpvLSRLKYTLITLGASLFVCALLLINleggqkgsyltptepgdeaipgvynddsaksfepdafcgepspp
Flexible Loop (DISEMBL)
mamvyqpstkpplstSFLSSSTHSLNFLSPNLRVGVRHHQYSYLipkipsppcFRIRRNSSsssssssntpplPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTEPGDEAIPGVYNDDSAKSFepdafcgepspp
Low Complexity Region (SEG)
MAMVYQpstkpplstsflsssthslnflspNLRVGVRHHQYSYLIPKIPSPPCFRIRRNsssssssssNTPPLPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTEPGDEAIPGVYNDDSAKSFEPDAFCGEPSPP
Disordered region (IsUnstruct)
************************LNFLSPNLRVGVRHHQYSYLIPKIPS**C*****************************************SSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQK**************************************
Disordered Region (DISOPRED)
**************TSFLSSSTHSLNFLSPNLRVGVRHH**************************************CPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKG************************FE****C******
Disordered Region (DISEMBL)
********************STHSLNFLSPNLRVGVRHHQYSYLIPKIPSPPCFRIR*********************PVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTEPGDEAIPGVYNDDSAKSFEPDA********
Disordered Region (DISPRO)
*A**Y*PSTKPPLSTSFLSSSTHSLNFLSPNLRVGVRHHQYSYLIPKIPSPPCFRIRRN****************TECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLT*******AI**********SFEPDAFCG*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMVYQPSTKPPLSTSFLSSSTHSLNFLSPNLRVGVRHHQYSYLIPKIPSPPCFRIRRNSSSSSSSSSNTPPLPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTEPGDEAIPGVYNDDSAKSFEPDAFCGEPSPP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
P48276	159	Uncharacterized protein y	N/A	no	0.542	0.955	0.443	2e-27
P51273	165	Uncharacterized protein y	N/A	no	0.517	0.878	0.402	5e-27
Q1XDL3	165	Uncharacterized protein y	N/A	no	0.517	0.878	0.395	6e-26
O78501	155	Uncharacterized protein y	yes	no	0.539	0.974	0.367	1e-22

>sp|P48276|YCF36_CYAPA Uncharacterized protein ycf36 OS=Cyanophora paradoxa GN=ycf36 PE=3 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 101/158 (63%), Gaps = 6/158 (3%)

Query: 76  TECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVG 135
           T CP+P +QQP+NEYQ L++S  F+W S     Y   LF T  S    +   + ++  + 
Sbjct: 3   TFCPIPTEQQPLNEYQILNNSVLFNWPSQKLKIYFFYLF-TIYSIGFLLTFLITFYNDLF 61

Query: 136 PDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTA 195
               P+   +  +  G  V+ L ++R+YLGW+Y+  RLLSATV YEE+GWYDGQIWVK++
Sbjct: 62  I-VHPVNIFVHGIIGGNFVLILDLLRLYLGWSYICQRLLSATVSYEESGWYDGQIWVKSS 120

Query: 196 EVLARDRLLGSFSVKPVLSRLKYTL----ITLGASLFV 229
           EVL +DRL+G + V+PVL+RLK TL    + LG +L +
Sbjct: 121 EVLIQDRLIGIYQVRPVLNRLKQTLGVVILILGFTLLI 158

Cyanophora paradoxa (taxid: 2762)

>sp|P51273|YCF36_PORPU Uncharacterized protein ycf36 OS=Porphyra purpurea GN=ycf36 PE=3 SV=1

 Score =  121 bits (304), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 4/149 (2%)

Query: 73  LPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFG 132
           L   +CPVP +QQP+NEY +L +S+ F W +     Y  ++ +T  +    V  PV    
Sbjct: 3   LYNNQCPVPLEQQPVNEYNSLKNSWFFCWPTLSSHSYNKKITITLIATCFLVS-PV--LL 59

Query: 133 AVGPDSE-PLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIW 191
           ++ P ++ PL+          ++    ++R+YLGW+YV  RL+SATV YEE+GWYDGQIW
Sbjct: 60  SIFPIAKLPLKFFFSEFIISSLITCFILIRLYLGWSYVVKRLMSATVFYEESGWYDGQIW 119

Query: 192 VKTAEVLARDRLLGSFSVKPVLSRLKYTL 220
           VK +E+L +DR +G + V P+L+++K TL
Sbjct: 120 VKPSEILVKDRFIGLYEVFPLLNKIKNTL 148

Porphyra purpurea (taxid: 2787)

>sp|Q1XDL3|YCF36_PORYE Uncharacterized protein ycf36 OS=Porphyra yezoensis GN=ycf36 PE=3 SV=1

 Score =  118 bits (295), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 94/149 (63%), Gaps = 4/149 (2%)

Query: 73  LPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFG 132
           L  T+CPVP +QQP++EY +L +S+ F W +     Y  ++ +      L V  P+    
Sbjct: 3   LYNTQCPVPKEQQPVHEYTSLKNSWFFCWPTLSRRSYNKKITIALLLNCLLVS-PIL--L 59

Query: 133 AVGPDSE-PLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIW 191
           ++ P ++ PL+       +  ++    ++R+YLGW+YV  RL+SATV YEE+GWYDGQIW
Sbjct: 60  SIFPITKLPLKFFFSEFITSSLMTGFILIRLYLGWSYVVKRLMSATVFYEESGWYDGQIW 119

Query: 192 VKTAEVLARDRLLGSFSVKPVLSRLKYTL 220
           VK +E+L +DR +G + V P+L+++K TL
Sbjct: 120 VKPSEILLKDRFIGLYEVFPLLNKIKNTL 148

Porphyra yezoensis (taxid: 2788)

>sp|O78501|YCF36_GUITH Uncharacterized protein ycf36 OS=Guillardia theta GN=ycf36 PE=3 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 7/158 (4%)

Query: 76  TECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVG 135
             CPVP +Q PINEY  L+S++ FSWA      Y    F+      LF+   +     + 
Sbjct: 1   MNCPVPENQLPINEYNKLTSAWDFSWACKIGKLYYK--FLLKMQLCLFLFFCIC----LN 54

Query: 136 PDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTA 195
                 E  L ++    + + L  +R YLG+ Y+  RLL + + YEE+ WYDGQ+WVK  
Sbjct: 55  FLDSKYETGLYSLILSTLFICLICLRTYLGFRYIYVRLLKSALPYEESSWYDGQVWVKNI 114

Query: 196 EVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALL 233
             L +DRL+  ++V P+LSRLK +  T+  S  +C LL
Sbjct: 115 NYLIKDRLVADYTVLPILSRLKISF-TINFSFLICLLL 151

Guillardia theta (taxid: 55529)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
224088842	259	predicted protein [Populus trichocarpa]	0.828	0.895	0.778	1e-104
225429556	268	PREDICTED: uncharacterized protein ycf36	0.921	0.962	0.725	1e-102
255550800	267	conserved hypothetical protein [Ricinus	0.903	0.947	0.661	1e-88
357437475	252	hypothetical protein MTR_1g016360 [Medic	0.814	0.904	0.687	8e-86
356552348	257	PREDICTED: uncharacterized protein ycf36	0.714	0.778	0.758	2e-84
449486658	297	PREDICTED: uncharacterized protein LOC10	0.775	0.730	0.696	2e-83
240256276	265	uncharacterized protein [Arabidopsis tha	0.725	0.766	0.725	1e-82
297811297	265	hypothetical protein ARALYDRAFT_350377 [	0.839	0.886	0.661	3e-82
449447116	270	PREDICTED: uncharacterized protein ycf36	0.896	0.929	0.608	3e-82
7573351	255	putative protein [Arabidopsis thaliana]	0.689	0.756	0.672	1e-73

>gi|224088842|ref|XP_002308564.1| predicted protein [Populus trichocarpa] gi|222854540|gb|EEE92087.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/244 (77%), Positives = 204/244 (83%), Gaps = 12/244 (4%)

Query: 37  RHHQYSYLIPKIPSPPCFRIRRNSSSSSSSSSNTPPLPETECPVPADQQPINEYQNLSSS 96
            HH Y   +PKIPS          SS  + SSNTPP  ETECPVP DQQPINEYQNLS+S
Sbjct: 26  HHHNYKNTLPKIPS----------SSFRNGSSNTPP--ETECPVPLDQQPINEYQNLSTS 73

Query: 97  FPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIVVT 156
           FPFSWASGD VEYCSRLFVTGASFAL + LPVAWFG V P +EPL+ +L A+SSGV VV+
Sbjct: 74  FPFSWASGDIVEYCSRLFVTGASFALLIALPVAWFGTVAPKTEPLKPVLAALSSGVFVVS 133

Query: 157 LAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRL 216
           LAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRL
Sbjct: 134 LAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRL 193

Query: 217 KYTLITLGASLFVCALLLINLEGGQKGSYLTPTEPGDEAIPGVYNDDSAKSFEPDAFCGE 276
           KYTL+TL ASLFVC +L IN+EGGQKGSY    E G  AIPGVYNDDSA+SFEPDAFCGE
Sbjct: 194 KYTLVTLAASLFVCVVLFINIEGGQKGSYTPFEEAGGRAIPGVYNDDSARSFEPDAFCGE 253

Query: 277 PSPP 280
           P+PP
Sbjct: 254 PAPP 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429556|ref|XP_002279783.1| PREDICTED: uncharacterized protein ycf36 [Vitis vinifera]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/270 (72%), Positives = 213/270 (78%), Gaps = 12/270 (4%)

Query: 8   STKPPLSTSFLSSSTHSLNFLSPNLRVGVRHHQYSYLIPKIPSPPCFRIRRNSSSSSSSS 67
           STK    T F  S  + L  ++P     + +     LI +IP           SSS ++ 
Sbjct: 8   STKSTQLTFFFPSKPNFLPPINPIKNPSLHYRDQKILISRIPL----------SSSFTNG 57

Query: 68  SNTPPLPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLP 127
           SNTPP  ETECPVP DQQPINEYQ LS+SFPFSWASGDFVEYCSRL VTG SFALF+GLP
Sbjct: 58  SNTPP--ETECPVPLDQQPINEYQTLSTSFPFSWASGDFVEYCSRLAVTGVSFALFIGLP 115

Query: 128 VAWFGAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYD 187
           VAWFGAVGPDSEPL+RILGAVSSG+ VVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYD
Sbjct: 116 VAWFGAVGPDSEPLKRILGAVSSGIFVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYD 175

Query: 188 GQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLT 247
           GQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTL+TL ASLFVCA LLIN+EG Q+   + 
Sbjct: 176 GQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLVTLAASLFVCAFLLINIEGSQRNLNIV 235

Query: 248 PTEPGDEAIPGVYNDDSAKSFEPDAFCGEP 277
               G  AIPGVYNDDSA+SFEPDAFCGEP
Sbjct: 236 SNGGGGRAIPGVYNDDSARSFEPDAFCGEP 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550800|ref|XP_002516448.1| conserved hypothetical protein [Ricinus communis] gi|223544268|gb|EEF45789.1| conserved hypothetical protein [Ricinus communis]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 176/266 (66%), Positives = 202/266 (75%), Gaps = 13/266 (4%)

Query: 12  PLSTSFLSSSTHSLNFLSPNLRVGVRHHQYSYLIPKIPSPPCFRIRRNSSSSSSSSSNTP 71
           PL   F  S+ + L+ + P  +          LIPK+P            SS  + SNTP
Sbjct: 12  PLPIFFFPSTPNLLSPIFPFSKPKFNQRHCRNLIPKLPL-----------SSFRNGSNTP 60

Query: 72  PLPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWF 131
              ETECPVP +QQPINEYQ+LS+SFPFSW + + VEYCSRLFVTGASFALF+GLPVAWF
Sbjct: 61  S--ETECPVPLEQQPINEYQSLSTSFPFSWPASNIVEYCSRLFVTGASFALFIGLPVAWF 118

Query: 132 GAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIW 191
           G+V P+SEP + I+ A SSG+++V+LAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIW
Sbjct: 119 GSVRPESEPFKPIIAAASSGILLVSLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIW 178

Query: 192 VKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTEP 251
           VKTAEVLARDRLLGSFSVKPVLSRLKYTL+TL   L  C +L IN+EG QKG Y+T    
Sbjct: 179 VKTAEVLARDRLLGSFSVKPVLSRLKYTLLTLATLLLGCVVLFINIEGAQKGVYVTSEAT 238

Query: 252 GDEAIPGVYNDDSAKSFEPDAFCGEP 277
            D  IPGVYNDDSA+SFEPDAFCGEP
Sbjct: 239 RDRTIPGVYNDDSARSFEPDAFCGEP 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437475|ref|XP_003589013.1| hypothetical protein MTR_1g016360 [Medicago truncatula] gi|355478061|gb|AES59264.1| hypothetical protein MTR_1g016360 [Medicago truncatula]

 Score =  322 bits (826), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 167/243 (68%), Positives = 185/243 (76%), Gaps = 15/243 (6%)

Query: 46  PKIPSPPC---FRIRRNSSSSSSSSSNTPPLP--------ETECPVPADQQPINEYQNLS 94
           PK+ SP     F I  N S + +++SN   L          TECPVP +QQPINEYQ+LS
Sbjct: 10  PKLFSPSTKTLFPIHTNKSITITNNSNRTKLSLLYLSSRNGTECPVPLEQQPINEYQSLS 69

Query: 95  SSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIV 154
           +SFPFSWA+GD VEY SRLFV G SFAL VGLPVAWFG VG   EP +RI+ A SSGV+ 
Sbjct: 70  TSFPFSWAAGDVVEYGSRLFVVGFSFALLVGLPVAWFGTVGAQYEPAKRIVCAASSGVLA 129

Query: 155 VTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLS 214
           VT AVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLS
Sbjct: 130 VTFAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLS 189

Query: 215 RLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTEPGDEAIPGVYNDDSAKSFEPDAFC 274
           RLK TL+ L A L  CAL+ IN++     SYLT  E G  AIPG YND+SA+SFEPDAFC
Sbjct: 190 RLKITLVGLAACLVTCALIFINID----ESYLTSRETGVRAIPGAYNDESARSFEPDAFC 245

Query: 275 GEP 277
           GEP
Sbjct: 246 GEP 248

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552348|ref|XP_003544530.1| PREDICTED: uncharacterized protein ycf36-like [Glycine max]

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 154/203 (75%), Positives = 171/203 (84%), Gaps = 3/203 (1%)

Query: 74  PETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGA 133
           PETECPVP +QQPINEYQ+LS+SFPFSWA+GD VEY SRLFVTGASFAL +GLPVAWFG+
Sbjct: 54  PETECPVPHEQQPINEYQSLSTSFPFSWAAGDVVEYASRLFVTGASFALLLGLPVAWFGS 113

Query: 134 VGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVK 193
            G  +EP +R+L A SSG+  VTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVK
Sbjct: 114 AGAQAEPAKRLLCAASSGLFAVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVK 173

Query: 194 TAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQKGSYLTPTEPGD 253
           TAEVLARDRLLGSF VKPVL RLK TL++L  SL VCAL+LIN++G Q    LT  EP  
Sbjct: 174 TAEVLARDRLLGSFFVKPVLGRLKITLVSLATSLLVCALILINIDGDQN---LTSKEPRV 230

Query: 254 EAIPGVYNDDSAKSFEPDAFCGE 276
             +PGVYNDDSA+ FEPDAF  E
Sbjct: 231 RVVPGVYNDDSARLFEPDAFRDE 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449486658|ref|XP_004157359.1| PREDICTED: uncharacterized protein LOC101226963 [Cucumis sativus]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 156/224 (69%), Positives = 184/224 (82%), Gaps = 7/224 (3%)

Query: 57  RRNSSSSSSSSSNTPPLPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVT 116
           R   S S    SN PP  ET CPVP +Q PINEYQ LS+SFPFSWA+GD VE+CSRL  T
Sbjct: 68  RMTLSFSFRKGSNVPP--ETGCPVPPEQLPINEYQTLSASFPFSWAAGDIVEFCSRLVAT 125

Query: 117 GASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSA 176
           GASFALF+GLPVAWFG VG +S+PL+R L AVSSG++ VT+AV+RMYLGWAYVGNRLLSA
Sbjct: 126 GASFALFIGLPVAWFGTVGVESDPLKRSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSA 185

Query: 177 TVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLIN 236
           TVEYEETGWYDGQIWVKTA+VLARDRLLGS++VKPVL+RLKYTL++L ASLFV  ++LIN
Sbjct: 186 TVEYEETGWYDGQIWVKTAQVLARDRLLGSYTVKPVLNRLKYTLVSLAASLFVSIVVLIN 245

Query: 237 LEGGQ-KGSYLT----PTEPGDEAIPGVYNDDSAKSFEPDAFCG 275
           ++GG+  G + T      + G   IPGVY+D+SA+SFEPDAFCG
Sbjct: 246 IDGGELLGPFFTGKSAANDGGGRVIPGVYSDESARSFEPDAFCG 289

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256276|ref|NP_196745.4| uncharacterized protein [Arabidopsis thaliana] gi|209863164|gb|ACI88740.1| At5g11840 [Arabidopsis thaliana] gi|332004343|gb|AED91726.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 153/211 (72%), Positives = 180/211 (85%), Gaps = 8/211 (3%)

Query: 72  PLPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWF 131
           PLPET+CPVP +QQPINEYQ+LS+SFPFSWASGD +EY +RLF+TGASFA FVGLPV+WF
Sbjct: 55  PLPETDCPVPPEQQPINEYQSLSTSFPFSWASGDLIEYSTRLFLTGASFAFFVGLPVSWF 114

Query: 132 GAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIW 191
           G++GP+ EP++RIL A SSG+ VVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQ+W
Sbjct: 115 GSIGPEYEPVKRILAASSSGIFVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQVW 174

Query: 192 VKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINL-EGGQKGSYLTPTE 250
           VKT EVLARDRLLGSFSVKPVL+RLK TL+ LG SL    +L+INL +     SY T  +
Sbjct: 175 VKTPEVLARDRLLGSFSVKPVLARLKNTLVILGLSL----ILVINLGDSPIATSYRTYRD 230

Query: 251 PGDEA---IPGVYNDDSAKSFEPDAFCGEPS 278
           P D +   IPG YND++A++FEP+AFCGEPS
Sbjct: 231 PRDRSSLPIPGAYNDETARTFEPEAFCGEPS 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811297|ref|XP_002873532.1| hypothetical protein ARALYDRAFT_350377 [Arabidopsis lyrata subsp. lyrata] gi|297319369|gb|EFH49791.1| hypothetical protein ARALYDRAFT_350377 [Arabidopsis lyrata subsp. lyrata]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/248 (66%), Positives = 194/248 (78%), Gaps = 13/248 (5%)

Query: 37  RHHQYSY--LIPKIPSPPCFRIRRNSSSSSSSSSNTPPLPETECPVPADQQPINEYQNLS 94
           RH ++ +  L PKIP P    I+  + +S         LPET+CPVP +QQPINEYQ+LS
Sbjct: 21  RHRRFLHHNLFPKIPLPSSL-IKFGAENSEPQPPPP--LPETDCPVPPEQQPINEYQSLS 77

Query: 95  SSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIV 154
           +SFPFSWASGD VEY +RLF TGASFA FVGLPV+WFG+VGP+ EP++RIL A SSG+ V
Sbjct: 78  TSFPFSWASGDLVEYSTRLFFTGASFAFFVGLPVSWFGSVGPEYEPVKRILAASSSGIFV 137

Query: 155 VTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLS 214
           VTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQ+WVKT EVL+RDRLLGSFSVKPVL+
Sbjct: 138 VTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQVWVKTPEVLSRDRLLGSFSVKPVLA 197

Query: 215 RLKYTLITLGASLFVCALLLINL-EGGQKGSYLTPTEPGDEA---IPGVYNDDSAKSFEP 270
           RLK TL+ LG SL    +L+INL +     SY T  +P D +   IPG YND++A++FEP
Sbjct: 198 RLKNTLVILGLSL----ILVINLGDSPIATSYRTYKDPRDRSSLPIPGAYNDETARTFEP 253

Query: 271 DAFCGEPS 278
           DAFCGEPS
Sbjct: 254 DAFCGEPS 261

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447116|ref|XP_004141315.1| PREDICTED: uncharacterized protein ycf36-like [Cucumis sativus]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 166/273 (60%), Positives = 202/273 (73%), Gaps = 22/273 (8%)

Query: 8   STKPPLSTSFLSSSTHSLNFLSPNLRVGVRHHQYSYLIPKIPSPPCFRIRRNSSSSSSSS 67
           S  PP   +FL S  +S   +SP     + H + S  + ++P    FR            
Sbjct: 7   SASPP---TFLLSVPNSRPLISPFTNTRLLHLRNS--VSRMPLSFSFR----------KG 51

Query: 68  SNTPPLPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLP 127
           SN PP  ET CPVP +Q PINEYQ LS+SFPFSWA+GD VE+CSRL  TGASFALF+GLP
Sbjct: 52  SNVPP--ETGCPVPPEQLPINEYQTLSASFPFSWAAGDIVEFCSRLVATGASFALFIGLP 109

Query: 128 VAWFGAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYD 187
           VAWFG VG +S+PL+  L AVSSG++ VT+AV+RMYLGWAYVGNRLLSATVEYEETGWYD
Sbjct: 110 VAWFGTVGVESDPLKLSLCAVSSGILFVTIAVLRMYLGWAYVGNRLLSATVEYEETGWYD 169

Query: 188 GQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINLEGGQ-KGSYL 246
           GQIWVKTA+VLARDRLLGS++VKPVL+RLKYTL++L ASLFV  ++LIN++GG+  G + 
Sbjct: 170 GQIWVKTAQVLARDRLLGSYTVKPVLNRLKYTLVSLAASLFVSIVVLINIDGGELLGPFF 229

Query: 247 T----PTEPGDEAIPGVYNDDSAKSFEPDAFCG 275
           T      + G   IPGVY+D+SA+SFEPDAFCG
Sbjct: 230 TGKSAANDGGGRVIPGVYSDESARSFEPDAFCG 262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7573351|emb|CAB87657.1| putative protein [Arabidopsis thaliana]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/211 (67%), Positives = 169/211 (80%), Gaps = 18/211 (8%)

Query: 72  PLPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWF 131
           PLPET+CPVP +QQPINEYQ+LS+SFPFSWASGD +EY +RLF+TGASFA FVGLPV+WF
Sbjct: 55  PLPETDCPVPPEQQPINEYQSLSTSFPFSWASGDLIEYSTRLFLTGASFAFFVGLPVSWF 114

Query: 132 GAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIW 191
           G++GP+ EP++RIL A SSG+ VVTLAVVRMYLGWAYV           EETGWYDGQ+W
Sbjct: 115 GSIGPEYEPVKRILAASSSGIFVVTLAVVRMYLGWAYVD----------EETGWYDGQVW 164

Query: 192 VKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINL-EGGQKGSYLTPTE 250
           VKT EVLARDRLLGSFSVKPVL+RLK TL+ LG SL    +L+INL +     SY T  +
Sbjct: 165 VKTPEVLARDRLLGSFSVKPVLARLKNTLVILGLSL----ILVINLGDSPIATSYRTYRD 220

Query: 251 PGDEA---IPGVYNDDSAKSFEPDAFCGEPS 278
           P D +   IPG YND++A++FEP+AFCGEPS
Sbjct: 221 PRDRSSLPIPGAYNDETARTFEPEAFCGEPS 251

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
TAIR|locus:2142999	265	AT5G11840 "AT5G11840" [Arabido	0.725	0.766	0.725	7.6e-80
TAIR|locus:2158197	327	CGLD27 "AT5G67370" [Arabidopsi	0.560	0.480	0.509	9.2e-36

TAIR|locus:2142999 AT5G11840 "AT5G11840" [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 153/211 (72%), Positives = 180/211 (85%)

Query:    72 PLPETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWF 131
             PLPET+CPVP +QQPINEYQ+LS+SFPFSWASGD +EY +RLF+TGASFA FVGLPV+WF
Sbjct:    55 PLPETDCPVPPEQQPINEYQSLSTSFPFSWASGDLIEYSTRLFLTGASFAFFVGLPVSWF 114

Query:   132 GAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIW 191
             G++GP+ EP++RIL A SSG+ VVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQ+W
Sbjct:   115 GSIGPEYEPVKRILAASSSGIFVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQVW 174

Query:   192 VKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLLINL-EGGQKGSYLTPTE 250
             VKT EVLARDRLLGSFSVKPVL+RLK TL+ LG SL    +L+INL +     SY T  +
Sbjct:   175 VKTPEVLARDRLLGSFSVKPVLARLKNTLVILGLSL----ILVINLGDSPIATSYRTYRD 230

Query:   251 PGDEA---IPGVYNDDSAKSFEPDAFCGEPS 278
             P D +   IPG YND++A++FEP+AFCGEPS
Sbjct:   231 PRDRSSLPIPGAYNDETARTFEPEAFCGEPS 261

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2158197 CGLD27 "AT5G67370" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 83/163 (50%), Positives = 107/163 (65%)

Query:    74 PETECPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALF--VGLPVAWF 131
             P +E  VP+DQ+P+NEY +L     +SW      E+  RL   G     F  +G+PVA  
Sbjct:    80 PSSEIEVPSDQRPVNEYSSLKEGMLYSWGELGPSEFFIRL--GGLWLVTFTVLGVPVA-A 136

Query:   132 GAVGPDSEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIW 191
              +  P  EPL  IL A +  + +V+L V+R+YLGW+YVG+RLLSA + YEE+GWYDGQ+W
Sbjct:   137 ASFNPSREPLRFILAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMW 196

Query:   192 VKTAEVLARDRLLGSFSVKPVLSRLKYTLITLGASLFVCALLL 234
             VK  EVLARDRLLGS+ VKPV+  LK TLI  GA L V A +L
Sbjct:   197 VKPPEVLARDRLLGSYKVKPVIKMLKQTLIGTGA-LLVSAFVL 238


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.435    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      280       247   0.00078  114 3  11 22  0.44    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  201 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.15u 0.19s 21.34t   Elapsed:  00:00:01
  Total cpu time:  21.15u 0.19s 21.34t   Elapsed:  00:00:01
  Start:  Sat May 11 12:29:26 2013   End:  Sat May 11 12:29:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00061626	hypothetical protein (259 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_IX0151	hypothetical protein (290 aa)			•	•					0.522
	estExt_fgenesh4_pg.C_LG_X1514	hypothetical protein (233 aa)			•	•					0.517
	eugene3.00150423	SubName- Full=Putative uncharacterized protein; (206 aa)			•	•					0.514
	gw1.IV.2885.1	photosystem II reaction center protein H PsbH (56 aa)			•						0.506
	gw1.I.8641.1	annotation not avaliable (113 aa)			•						0.506
	grail3.0003001601	hypothetical protein (149 aa)			•						0.506
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•						0.506
	estExt_fgenesh4_pg.C_LG_II1804	SubName- Full=Putative uncharacterized protein; (127 aa)			•						0.506
	estExt_Genewise1_v1.C_LG_XIV2304	hypothetical protein (126 aa)			•						0.506
	estExt_Genewise1_v1.C_LG_XIII0363	hypothetical protein (158 aa)			•						0.506

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	280
pfam06799	145	pfam06799, DUF1230, Protein of unknown function (D	5e-60

>gnl|CDD|191610 pfam06799, DUF1230, Protein of unknown function (DUF1230)

 Score =  187 bits (476), Expect = 5e-60
 Identities = 70/147 (47%), Positives = 94/147 (63%), Gaps = 2/147 (1%)

Query: 78  CPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPD 137
           CPVP +Q+P+NEY+ L  S+ FSW + +   Y  +L       +  V  P+A  G+    
Sbjct: 1   CPVPPEQRPLNEYEELKDSWFFSWPTLEKKGYYRKLLKI-WLISFPVFGPIAS-GSFPLR 58

Query: 138 SEPLERILGAVSSGVIVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEV 197
             PL  IL A    +++  L ++R+YLGW+YV  RLLS TVEYEE+GWYDGQ+WVK  E 
Sbjct: 59  KSPLRLILSAALGALLIPLLILLRLYLGWSYVRKRLLSETVEYEESGWYDGQVWVKPPEW 118

Query: 198 LARDRLLGSFSVKPVLSRLKYTLITLG 224
           LARDRL+ S+ VKP+L+RLK TL  L 
Sbjct: 119 LARDRLIASYQVKPILNRLKQTLAILA 145

This family consists of several hypothetical plant and photosynthetic bacterial proteins of around 160 residues in length. The function of this family is unknown although looking at the species distribution the protein may play a part in photosynthesis. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
PF06799	144	DUF1230: Protein of unknown function (DUF1230); In	100.0

>PF06799 DUF1230: Protein of unknown function (DUF1230); InterPro: IPR009631 This family represents Ycf36, which is found in plants, encoded in the genomes of algal chloroplasts and in cyanobacteria

Probab=100.00  E-value=5.4e-76  Score=498.93  Aligned_cols=144  Identities=55%  Similarity=1.000  Sum_probs=140.8

Q ss_pred             CCCCCCCCchHHHHHhhcCCCcccCCCChHHHHHHHHHHHHHhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHH
Q 040797           78 CPVPADQQPINEYQNLSSSFPFSWASGDFVEYCSRLFVTGASFALFVGLPVAWFGAVGPDSEPLERILGAVSSGVIVVTL  157 (280)
Q Consensus        78 CPVP~EQrPvNEY~eLk~SwfFsW~tl~~~~Y~~rL~~~w~~~~~li~~PIAa~~Sf~p~~~pl~~il~a~~ga~~lv~L  157 (280)
                      ||||.||||+|||+|||+||||+||+++..+|.+||+++|. +++++++|||+ +||+++++|+|++++|++||+++++|
T Consensus         1 CPVP~eQqP~nEy~~L~~S~~FsW~~~~~~~y~~~l~~~w~-~~~~~~~pia~-~S~~~~~~~~~~~l~~~~ga~~~~~l   78 (144)
T PF06799_consen    1 CPVPPEQQPLNEYQELKESWFFSWPTLELKSYLKRLLWIWL-ISFLVFGPIAA-GSFPPEKDPLEFILSGAVGALLLLLL   78 (144)
T ss_pred             CccCccccCHHHHHHHhhCcCccCccCChHHHHHHHHHHHH-HHHHHHHhhhe-eecCccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999976 88889999999 99999999999999999999999999


Q ss_pred             HHHHHHhChHHHHhhhccCceeccccCccCCcccccCHHHHhhhhhccccchhhHHHHHHHHHHHH
Q 040797          158 AVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLITL  223 (280)
Q Consensus       158 vlLRLYLGWsYV~dRLlSatVeYEESGWYDGQvWvKP~EvLaRDRLI~sYqVkPIL~RLk~Tl~~l  223 (280)
                      +++||||||+||+|||+|||||||||||||||+|+||+|+|+|||||++|||||||+|||+|+.++
T Consensus        79 ~llRlyLGW~YV~~RL~s~tV~YEESGWYDGQ~W~Kp~e~l~rDrLi~~yqVkPiL~RL~~tl~~l  144 (144)
T PF06799_consen   79 VLLRLYLGWSYVGDRLLSATVEYEESGWYDGQVWVKPPEVLARDRLIGSYQVKPILSRLKQTLSIL  144 (144)
T ss_pred             HHHHHHhChHHHHhhhccCcccccccCccCCccccCCHHHHHHHHHHhhhhhhHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999753

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00