Citrus Sinensis ID: 040870

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
MNENGFKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPEELLKGKPSLDTKLIAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKPAPVLMKRVQRY
ccccccccHHHHccccccccEEEEccHHHHHccccHHHHHHHHHHHHHHccccEEEEccHHHHHHHHccEEEEEEEcccHHHHHHHcccccEEEccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHcccccccccccccccccHHHHcccccHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHcc
ccccccccHHHHHcHHHcccEEEcccHHHHHHHHHHcccccccHHHHHHcccEEEEcccccccccHcccEEEEEEEcccHHHHHHHccccEEEEcccccEEEEEHEEcccccccHHHHccccccccHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHcccHcccccccHHHHHHccccccccHHHHHHHHHHHHHHHccccccHcccccc
mnengfkdwkdlwlpelagrismvnsprevigtQAAAGRIAVQQNLALLGnqvrlfdrtHYLKVFGIGDVWIAVGwssdvlpavkRMSNVAVVVPKSGASLWADLWAipaasrletkqiggrvrgpfplIHQWIEFCLQTAralpfntrvklpeellkgkpsldtkliagvppaeiLARCefleplseatLSDYEWLVANLQKPAPVLMKRVQRY
mnengfkdwkdlwLPELAGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPeellkgkpsldtKLIAGVPPAEILARCEFLEPLSEATLSDYEWLVANlqkpapvlmkrvqry
MNENGFKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPEELLKGKPSLDTKLIAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKPAPVLMKRVQRY
*****FKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPEELLKGKPSLDTKLIAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQK************
**ENGFKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPEELLKGKPSLDTKLIAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKPAPVL*******
MNENGFKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPEELLKGKPSLDTKLIAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKPAPVLMKRVQRY
***NGFKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLE****GGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPEELLKGKPSLDTKLIAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKPAPVLMK*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNENGFKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPEELLKGKPSLDTKLIAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKPAPVLMKRVQRY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query215 2.2.26 [Sep-21-2011]
P45168360 Spermidine/putrescine-bin yes no 0.8 0.477 0.252 2e-07
P44731350 Spermidine/putrescine-bin no no 0.720 0.442 0.269 8e-07
P31133370 Putrescine-binding peripl N/A no 0.288 0.167 0.323 7e-05
>sp|P45168|POTD1_HAEIN Spermidine/putrescine-binding periplasmic protein 1 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=potD-B PE=3 SV=1 Back     alignment and function desciption
 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 26/198 (13%)

Query: 6   FKDWKDLWLPELAGRISMVNSPREVIG-----------TQAAAGRIAVQQNLALLGNQVR 54
           F  W DLW PE A ++ +++  REV             TQ  A      + L  L   V 
Sbjct: 160 FTSWADLWKPEFANKVQLLDDAREVFNIALLKIGQDPNTQDPAIIKQAYEELLKLRPNVL 219

Query: 55  LFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRL 114
            F+  +    F  G+V +   W+  V  A K  + + +V PK G  LW D  AIPA ++ 
Sbjct: 220 SFNSDNPANSFISGEVEVGQLWNGSVRIAKKEKAPLNMVFPKEGPVLWVDTLAIPATAK- 278

Query: 115 ETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPEELLKGKPSLDTKLI---AGV 171
                     G     H+ I + L    A      +  P   ++ K +L  ++    A  
Sbjct: 279 -------NSEG----AHKLINYMLGKKTAEKLTLAIGYPTSNIEAKKALPKEITEDPAIY 327

Query: 172 PPAEILARCEFLEPLSEA 189
           P A+IL    + + + +A
Sbjct: 328 PSADILKNSHWQDDVGDA 345
Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine. Polyamine binding protein.
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)
>sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding periplasmic protein 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=potD-A PE=3 SV=2 Back     alignment and function description
>sp|P31133|POTF_ECOLI Putrescine-binding periplasmic protein OS=Escherichia coli (strain K12) GN=potF PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
255557729 507 transporter, putative [Ricinus communis] 0.976 0.414 0.629 2e-82
224074577 424 predicted protein [Populus trichocarpa] 0.976 0.495 0.637 2e-81
449455671 549 PREDICTED: uncharacterized protein LOC10 0.972 0.380 0.630 5e-81
147822062 875 hypothetical protein VITISV_021806 [Viti 0.976 0.24 0.618 4e-79
225427562 553 PREDICTED: uncharacterized protein LOC10 0.976 0.379 0.618 2e-77
356559069 552 PREDICTED: uncharacterized protein LOC10 0.967 0.376 0.592 3e-75
357517389 786 RING-H2 finger protein ATL5F [Medicago t 0.976 0.267 0.583 3e-75
356560607 508 PREDICTED: uncharacterized protein LOC10 0.967 0.409 0.571 1e-72
115460340 367 Os04g0602200 [Oryza sativa Japonica Grou 0.925 0.542 0.563 1e-68
38344144 422 OSJNBa0041A02.11 [Oryza sativa Japonica 0.925 0.471 0.563 2e-68
>gi|255557729|ref|XP_002519894.1| transporter, putative [Ricinus communis] gi|223540940|gb|EEF42498.1| transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 151/240 (62%), Positives = 178/240 (74%), Gaps = 30/240 (12%)

Query: 6   FKDWKDLWLPELAGRISMVNSPREVIGT----------------QAAAGRIAVQQNLALL 49
            +DW DLW P+L GRISM++SPREV+G                 +   G+ AVQ+NLAL 
Sbjct: 251 IEDWADLWRPDLKGRISMIDSPREVVGAVLKYMGASYNAKDIELEVHGGKSAVQENLALF 310

Query: 50  GNQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIP 109
           G QVRLFD  HYLK FG+GDVW+AVGWSSDVLP  KRMSN+AVVVPKSG+SLWADLWAIP
Sbjct: 311 GKQVRLFDSMHYLKAFGVGDVWVAVGWSSDVLPVAKRMSNIAVVVPKSGSSLWADLWAIP 370

Query: 110 AASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPF--------------NTRVKLPEE 155
           AASRL T +IGGRVRGP PLIHQWIEFCLQ ARA+PF              +T V++PEE
Sbjct: 371 AASRLATNRIGGRVRGPSPLIHQWIEFCLQAARAMPFKQEVIPGASPSALESTPVEVPEE 430

Query: 156 LLKGKPSLDTKLIAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKPAPVLMKRVQRY 215
           L +GKP LDT LIAGVPP EIL+RCEFLEPLS+A L DY+WL+A++Q+P P L+ R+  Y
Sbjct: 431 LTRGKPRLDTNLIAGVPPPEILSRCEFLEPLSDAQLLDYKWLIASMQQPGPNLIHRIHPY 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224074577|ref|XP_002304393.1| predicted protein [Populus trichocarpa] gi|222841825|gb|EEE79372.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449455671|ref|XP_004145575.1| PREDICTED: uncharacterized protein LOC101211357 [Cucumis sativus] gi|449485058|ref|XP_004157059.1| PREDICTED: uncharacterized protein LOC101230567 [Cucumis sativus] Back     alignment and taxonomy information
>gi|147822062|emb|CAN68081.1| hypothetical protein VITISV_021806 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427562|ref|XP_002266662.1| PREDICTED: uncharacterized protein LOC100242504 [Vitis vinifera] gi|296085502|emb|CBI29234.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559069|ref|XP_003547824.1| PREDICTED: uncharacterized protein LOC100781794 [Glycine max] Back     alignment and taxonomy information
>gi|357517389|ref|XP_003628983.1| RING-H2 finger protein ATL5F [Medicago truncatula] gi|355523005|gb|AET03459.1| RING-H2 finger protein ATL5F [Medicago truncatula] Back     alignment and taxonomy information
>gi|356560607|ref|XP_003548582.1| PREDICTED: uncharacterized protein LOC100809061 [Glycine max] Back     alignment and taxonomy information
>gi|115460340|ref|NP_001053770.1| Os04g0602200 [Oryza sativa Japonica Group] gi|113565341|dbj|BAF15684.1| Os04g0602200, partial [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|38344144|emb|CAE01823.2| OSJNBa0041A02.11 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
TAIR|locus:2206194524 AT1G31410 [Arabidopsis thalian 0.916 0.375 0.572 2.1e-61
TIGR_CMR|BA_1300345 BA_1300 "spermidine/putrescine 0.488 0.304 0.310 1.7e-07
UNIPROTKB|Q9KKJ4343 VCA1113 "Spermidine/putrescine 0.827 0.518 0.230 0.00016
TIGR_CMR|VC_A1113343 VC_A1113 "spermidine/putrescin 0.827 0.518 0.230 0.00016
TAIR|locus:2206194 AT1G31410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 131/229 (57%), Positives = 157/229 (68%)

Query:     7 KDWKDLWLPELAGRISMVNSPREVIG----------------TQAAAGRIAVQQNLALLG 50
             +DW DLW PELAGRI+MVNSPREV+G                +Q   GR+AV++NLA L 
Sbjct:   262 EDWADLWRPELAGRIAMVNSPREVVGAVLKYMRASYNTTDLDSQVPGGRLAVEKNLASLM 321

Query:    51 NQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA 110
              Q+RLFD  +YLK F +GDVW+ VGWSSDV+P  KRMSNV V+VPKSGA+LWADLWAIPA
Sbjct:   322 KQIRLFDSNNYLKAFNVGDVWVTVGWSSDVIPVAKRMSNVTVIVPKSGATLWADLWAIPA 381

Query:   111 ASRL--ETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRV-------KL-------PE 154
              S    E +Q GGRVRGP PLI+QWIEFCLQ AR+LPF   V        L       PE
Sbjct:   382 VSDSGKEAEQRGGRVRGPSPLINQWIEFCLQPARSLPFTREVIPGASPSALDGPLVTEPE 441

Query:   155 ELLKGKPSLDTKLIAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQK 203
             +  K +  LDT L+ GVPP EIL++CEFLEPL EATLS+Y  L+  ++K
Sbjct:   442 KTKKDRTKLDTNLVTGVPPPEILSKCEFLEPLPEATLSEYRLLIETVRK 490
GO:0005215 "transporter activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
TIGR_CMR|BA_1300 BA_1300 "spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KKJ4 VCA1113 "Spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A1113 VC_A1113 "spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
COG0687363 COG0687, PotD, Spermidine/putrescine-binding perip 8e-15
pfam13343239 pfam13343, SBP_bac_6, Bacterial extracellular solu 9e-14
pfam13416281 pfam13416, SBP_bac_8, Bacterial extracellular solu 2e-06
PRK10682370 PRK10682, PRK10682, putrescine transporter subunit 3e-06
PRK09501348 PRK09501, potD, spermidine/putrescine ABC transpor 2e-04
>gnl|CDD|223759 COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism] Back     alignment and domain information 
 Score = 71.7 bits (176), Expect = 8e-15
 Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 40/219 (18%)

Query: 2   NENGFKDWKDLWLPE----LAGR-ISMVNSPREVIGTQAAA----GRIAVQQNL----AL 48
           +      W DL+ PE    L G+ +++++  REV G   A           ++L     L
Sbjct: 150 DAPPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTDPEDLKKAFDL 209

Query: 49  LG----NQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPA--VKRMSNVAVVVPKSGASLW 102
           L       V  FD + Y+++   G+V +A+GWS D   A   K  + +  V+PK G+ LW
Sbjct: 210 LDKLKPVNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEGSILW 269

Query: 103 ADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLP------EEL 156
            D  AIP  ++                 +++I F L    A      V          +L
Sbjct: 270 FDNLAIPKGAKNV------------DAAYKFINFLLDPEVAAKLAEFVGYAPPNKAARKL 317

Query: 157 LKGKPSLDTKLIAGVPPAEILARCEFLEPLSEATLSDYE 195
           L  +   D  +    P AEIL +    + L    L  Y 
Sbjct: 318 LPKEIKDDPAIY---PTAEILKKLFGQKDLGPEALRLYT 353

Length = 363
>gnl|CDD|222057 pfam13343, SBP_bac_6, Bacterial extracellular solute-binding protein Back     alignment and domain information
>gnl|CDD|222114 pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein Back     alignment and domain information
>gnl|CDD|182645 PRK10682, PRK10682, putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional Back     alignment and domain information
>gnl|CDD|181913 PRK09501, potD, spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 215
PRK09501348 potD spermidine/putrescine ABC transporter peripla 100.0
COG0687363 PotD Spermidine/putrescine-binding periplasmic pro 99.97
PRK10682370 putrescine transporter subunit: periplasmic-bindin 99.96
TIGR03261334 phnS2 putative 2-aminoethylphosphonate ABC transpo 99.9
PF13343242 SBP_bac_6: Bacterial extracellular solute-binding 99.88
TIGR03227367 PhnS 2-aminoethylphosphonate ABC transporter, peri 99.83
TIGR01254304 sfuA ABC transporter periplasmic binding protein, 99.83
TIGR01276309 thiB thiamine ABC transporter, periplasmic binding 99.82
PRK11622401 hypothetical protein; Provisional 99.81
PRK11205330 tbpA thiamine transporter substrate binding subuni 99.79
COG1840299 AfuA ABC-type Fe3+ transport system, periplasmic c 99.73
PRK15046349 2-aminoethylphosphonate ABC transporter substrate- 99.72
TIGR01256216 modA molybdenum ABC transporter, periplasmic molyb 99.56
COG4143336 TbpA ABC-type thiamine transport system, periplasm 99.54
PRK10752329 sulfate transporter subunit; Provisional 99.5
TIGR00971315 3a0106s03 sulfate/thiosulfate-binding protein. Thi 99.47
PF13416281 SBP_bac_8: Bacterial extracellular solute-binding 99.46
PRK10852338 thiosulfate transporter subunit; Provisional 99.43
PF13531230 SBP_bac_11: Bacterial extracellular solute-binding 99.19
PRK03537188 molybdate ABC transporter periplasmic molybdate-bi 98.9
PRK10677257 modA molybdate transporter periplasmic protein; Pr 98.86
COG4134384 ABC-type uncharacterized transport system, peripla 98.82
COG1613348 Sbp ABC-type sulfate transport system, periplasmic 98.63
COG0725258 ModA ABC-type molybdate transport system, periplas 97.92
PRK04168334 molybdate ABC transporter periplasmic substrate-bi 97.87
COG4150341 CysP ABC-type sulfate transport system, periplasmi 97.79
PF01547315 SBP_bac_1: Bacterial extracellular solute-binding 97.55
PRK09474396 malE maltose ABC transporter periplasmic protein; 97.53
TIGR03730273 tungstate_WtpA tungstate ABC transporter binding p 97.15
COG4588252 AcfC Accessory colonization factor AcfC, contains 97.08
TIGR03850437 bind_CPR_0540 carbohydrate ABC transporter substra 97.06
TIGR03851450 chitin_NgcE carbohydrate ABC transporter, N-acetyl 96.8
PF02030493 Lipoprotein_8: Hypothetical lipoprotein (MG045 fam 96.13
COG1653433 UgpB ABC-type sugar transport system, periplasmic 95.84
PRK10974438 glycerol-3-phosphate transporter periplasmic bindi 94.33
PRK11063271 metQ DL-methionine transporter substrate-binding s 88.89
PF12727193 PBP_like: PBP superfamily domain; InterPro: IPR024 86.33
TIGR00363258 lipoprotein, YaeC family. This family of putative 85.73
PRK09861272 cytoplasmic membrane lipoprotein-28; Provisional 84.22
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=1e-32  Score=245.93  Aligned_cols=189  Identities=24%  Similarity=0.359  Sum_probs=165.3

Q ss_pred             CCCCCChhhhcCccCCCceeeecChhHHHHHHH-Hc----------cHHHHHHHHHHhccccceeccchhhhhhhcCcEE
Q 040870            3 ENGFKDWKDLWLPELAGRISMVNSPREVIGTQA-AA----------GRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVW   71 (215)
Q Consensus         3 ~~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al-~~----------g~~~a~~~L~~l~~~v~~~~~~~~~~~~~~Gev~   71 (215)
                      +.+|+||+|||+|+|+|+|+|.++..+.+.+++ ..          +.+++.+.|.++++++..|+.+...+.|.+||++
T Consensus       145 ~~~~~sw~dL~~p~~~g~i~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~a~~~l~~l~~~v~~~~~~~~~~~l~~Gev~  224 (348)
T PRK09501        145 PKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVN  224 (348)
T ss_pred             CCCCCCHHHHhCHHHcCCeEEeCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhhhhhEEEcCcHHHHHHHcCCEE
Confidence            457899999999999999999998888777664 22          3567899999999999888776677899999999


Q ss_pred             EEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCCC
Q 040870           72 IAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVK  151 (215)
Q Consensus        72 ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~~  151 (215)
                      ++++|+++...++..+.++++++|+||+..|+|+++|+++++|++            +|++||||++|||.|..++...+
T Consensus       225 i~~~w~~~~~~~~~~g~~i~~~~P~eG~~~~~~~~~i~k~a~n~e------------~A~~Fi~~llspe~q~~~~~~~~  292 (348)
T PRK09501        225 LGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKE------------GALKLINFLLRPDVAKQVAETIG  292 (348)
T ss_pred             EEEeehHHHHHHHhcCCCceEEecCCCcceEEEeeeEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHHhC
Confidence            999999999888888899999999999999999999999999998            99999999999999988877777


Q ss_pred             ChhhhhcCCCCCchhh---hcCCCCHHHhhcccccCCCCHHHHHHHHHHHHHHhCC
Q 040870          152 LPEELLKGKPSLDTKL---IAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKP  204 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~l---~~~~p~~e~~~~~~~~~~~~~~~~~~~~~~W~~vk~~  204 (215)
                      +++.+..+.+.+++++   +.++|+++.+.+++++.++++ ..+.|+++|++||+.
T Consensus       293 ~~~~n~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~  347 (348)
T PRK09501        293 YPTPNLAARKLLSPEVANDKSLYPDAETIKKGEWQNDVGA-ASSIYEEYYQKLKAG  347 (348)
T ss_pred             CCChhHHHHHhCCHHHhcCCCcCcCHHHHhccEEecCCCH-HHHHHHHHHHHHhcc
Confidence            7777776666666665   248999999999999999986 468899999999974

>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional Back     alignment and domain information
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein Back     alignment and domain information
>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A Back     alignment and domain information
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein Back     alignment and domain information
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily Back     alignment and domain information
>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein Back     alignment and domain information
>PRK11622 hypothetical protein; Provisional Back     alignment and domain information
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional Back     alignment and domain information
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional Back     alignment and domain information
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein Back     alignment and domain information
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism] Back     alignment and domain information
>PRK10752 sulfate transporter subunit; Provisional Back     alignment and domain information
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein Back     alignment and domain information
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A Back     alignment and domain information
>PRK10852 thiosulfate transporter subunit; Provisional Back     alignment and domain information
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A Back     alignment and domain information
>PRK03537 molybdate ABC transporter periplasmic molybdate-binding protein; Provisional Back     alignment and domain information
>PRK10677 modA molybdate transporter periplasmic protein; Provisional Back     alignment and domain information
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only] Back     alignment and domain information
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK04168 molybdate ABC transporter periplasmic substrate-binding protein; Provisional Back     alignment and domain information
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA Back     alignment and domain information
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only] Back     alignment and domain information
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family Back     alignment and domain information
>TIGR03851 chitin_NgcE carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein Back     alignment and domain information
>PF02030 Lipoprotein_8: Hypothetical lipoprotein (MG045 family) Back     alignment and domain information
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional Back     alignment and domain information
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Back     alignment and domain information
>PF12727 PBP_like: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily [] Back     alignment and domain information
>TIGR00363 lipoprotein, YaeC family Back     alignment and domain information
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
3ttl_A340 Crystal Structure Of Apo-Spue Length = 340 4e-07
3ttn_A340 Crystal Structures Of Polyamine Receptors Spud And 8e-07
1a99_A344 Putrescine Receptor (Potf) From E. Coli Length = 34 5e-06
4gl0_A333 Putative SpermidinePUTRESCINE ABC TRANSPORTER FROM 1e-05
1poy_1323 SpermidinePUTRESCINE-Binding Protein Complexed With 1e-04
1pot_A325 Spermidine/putrescine-binding Protein Complexed Wit 1e-04
4edp_A351 1.85 Angstrom Resolution Crystal Structure Of An Ab 2e-04
2v84_A343 Crystal Structure Of The Tp0655 (Tppotd) Lipoprotei 9e-04
>pdb|3TTL|A Chain A, Crystal Structure Of Apo-Spue Length = 340 Back     alignment and structure 
Iteration: 1

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 53  VRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMS------NVAVVVPKSGASLWADLW 106
           V  F  + Y+     G++ +A G+S DV  A  R        ++  V+PK GA+LW DL 
Sbjct: 194 VSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLM 253
Query: 107 AIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALP-----FNTRVKLPEELLKGKP 161
           AIPA ++              P +   +   +  A A+P      +  V   EE+   + 
Sbjct: 254 AIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQA 313
Query: 162 SLDTKLIAGVPPAEIL 177
            LD   ++ V PA++L
Sbjct: 314 VLDKLYVSAVLPAKVL 329
>pdb|3TTN|A Chain A, Crystal Structures Of Polyamine Receptors Spud And Spue From Pseudomonas Aeruginosa Length = 340 Back     alignment and structure
>pdb|1A99|A Chain A, Putrescine Receptor (Potf) From E. Coli Length = 344 Back     alignment and structure
>pdb|4GL0|A Chain A, Putative SpermidinePUTRESCINE ABC TRANSPORTER FROM LISTERIA Monocytogenes Length = 333 Back     alignment and structure
>pdb|1POY|1 Chain 1, SpermidinePUTRESCINE-Binding Protein Complexed With Spermidine (Dimer Form) Length = 323 Back     alignment and structure
>pdb|1POT|A Chain A, Spermidine/putrescine-binding Protein Complexed With Spermidine (monomer Form) Length = 325 Back     alignment and structure
>pdb|4EDP|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of An Abc Transporter From Clostridium Perfringens Atcc 13124 Length = 351 Back     alignment and structure
>pdb|2V84|A Chain A, Crystal Structure Of The Tp0655 (Tppotd) Lipoprotein Of Treponema Pallidum Length = 343 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
4eqb_A330 Spermidine/putrescine ABC superfamily ATP binding 3e-30
1pot_A325 POTD, spermidine/putrescine-binding protein; polya 3e-29
2v84_A343 Spermidine/putrescine ABC transporter, periplasmi 5e-27
1a99_A344 POTF, putrescine-binding protein; transport, perip 6e-25
3ttn_A340 Polyamine transport protein; polyamine binding pro 2e-24
3ttm_A346 Polyamine transport protein; polyamine binding, pu 3e-24
4edp_A351 ABC transporter, substrate-binding protein; clostr 3e-21
3pu5_A333 Extracellular solute-binding protein; structural g 9e-18
3rpw_A365 ABC transporter; structural genomics, PSI-biology, 6e-16
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431} Length = 330 Back     alignment and structure
 Score =  112 bits (283), Expect = 3e-30
 Identities = 39/205 (19%), Positives = 62/205 (30%), Gaps = 28/205 (13%)

Query: 6   FKDWKDLWLPELAGRISMVNSPREVIG-----------TQAAAGRIAVQQNLALLGNQVR 54
            + W DLW  E    I + +  REV+G           ++           L  L   ++
Sbjct: 128 PEHWDDLWKLEYKNSIMLFDGAREVLGLGLNSLGYSLNSKDPQQLEETVDKLYKLTPNIK 187

Query: 55  LFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA-ASR 113
                         +V I V +S +    +++  N+  VVP   ++LW D   IP     
Sbjct: 188 AIVADEMKGYMIQNNVAIGVTFSGEASQMLEKNENLRYVVPTEASNLWFDNMVIPKTVKN 247

Query: 114 LETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPEELLKGKPSLDTKLIAG--- 170
            +               + +I F L+   AL     V      L  K  L  +       
Sbjct: 248 QD-------------SAYAFINFMLKPENALQNAEYVGYSTPNLPAKELLPEETKEDKAF 294

Query: 171 VPPAEILARCEFLEPLSEATLSDYE 195
            P  E +   E  E         Y 
Sbjct: 295 YPDVETMKHLEVYEKFDHKWTGKYS 319
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1* Length = 325 Back     alignment and structure
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum} Length = 343 Back     alignment and structure
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1 Length = 344 Back     alignment and structure
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A* Length = 340 Back     alignment and structure
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A Length = 346 Back     alignment and structure
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens} Length = 351 Back     alignment and structure
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis} Length = 333 Back     alignment and structure
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris} Length = 365 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
4gl0_A333 LMO0810 protein; structural genomics, IDP05673, sp 100.0
4eqb_A330 Spermidine/putrescine ABC superfamily ATP binding 99.96
3ttm_A346 Polyamine transport protein; polyamine binding, pu 99.95
3ttn_A340 Polyamine transport protein; polyamine binding pro 99.94
1pot_A325 POTD, spermidine/putrescine-binding protein; polya 99.94
2v84_A343 Spermidine/putrescine ABC transporter, periplasmi 99.88
4i1d_A324 ABC transporter substrate-binding protein; structu 99.88
4euo_A320 ABC transporter, substrate binding protein (polya; 99.88
1a99_A344 POTF, putrescine-binding protein; transport, perip 99.86
3rpw_A365 ABC transporter; structural genomics, PSI-biology, 99.86
3pu5_A333 Extracellular solute-binding protein; structural g 99.82
3c9h_A355 ABC transporter, substrate binding protein; struct 99.75
4edp_A351 ABC transporter, substrate-binding protein; clostr 99.75
3e13_X322 Putative iron-uptake ABC transport system, peripla 99.69
2qry_A330 Thiamine-binding periplasmic protein; thiamin bind 99.68
1xvx_A312 YFUA; periplasmic iron binding protein, iron bindi 99.62
1q35_A320 Iron binding protein FBPA; metal binding protein; 99.61
2voz_A346 FUTA2, periplasmic iron-binding protein; ferric bi 99.61
1nnf_A309 Iron-utilization periplasmic protein; iron-binding 99.61
3cg1_A296 UPF0100 protein PF0080; ABC transporter, binding p 99.58
2pt1_A334 Iron transport protein; C-clamp, iron-binding prot 99.56
1y9u_A323 Putative iron binding protein; periplasmic binding 99.55
1sbp_A310 Sulfate-binding protein; 1.70A {Salmonella typhimu 99.53
2hxw_A237 Major antigenic peptide PEB3; periplasmic binding 99.37
3cfx_A296 UPF0100 protein MA_0280; ABC transporter, binding 99.31
3cij_A295 UPF0100 protein AF_0094; archaeal periplasmic bind 99.31
3r26_A237 Molybdate-binding periplasmic protein; protein bin 99.24
3cfz_A292 UPF0100 protein MJ1186; ABC transporter, binding p 99.09
3gzg_A253 Molybdate-binding periplasmic protein; permease; m 99.06
1atg_A231 MODA, periplasmic molybdate-binding protein; tungs 99.03
3quf_A414 Extracellular solute-binding protein, family 1; st 98.83
4dxb_A 637 RG13, maltose-binding periplasmic protein, beta-la 98.78
2gha_A382 Maltose ABC transporter, periplasmic maltose-BIND 98.77
3osr_A 653 Maltose-binding periplasmic protein, green fluore 98.68
2xd3_A416 MALX, maltose/maltodextrin-binding protein; solute 98.68
3uor_A458 ABC transporter sugar binding protein; ALFA/beta p 98.67
1urs_A402 Maltose-binding protein; maltodextrin-binding prot 98.64
2zyo_A397 Solute-binding protein; open form, sugar binding p 98.64
3k01_A412 Acarbose/maltose binding protein GACH; ABC transpo 98.62
1hsj_A 487 Fusion protein consisting of staphylococcus access 98.6
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 98.58
2xz3_A463 Maltose ABC transporter periplasmic protein, ENVE 98.58
1y4c_A 494 Maltose binding protein fused with designed helica 98.57
3csg_A 461 MBP, maltose-binding protein monobody YS1 fusion, 98.57
2vgq_A477 Maltose-binding periplasmic protein, mitochondrial 98.57
3ob4_A 500 Conglutin, maltose ABC transporter periplasmic pro 98.55
4hs7_A420 Bacterial extracellular solute-binding protein, P; 98.54
2zxt_A 465 Maltose-binding periplasmic protein, linker, MITO 98.5
3n94_A 475 Fusion protein of maltose-binding periplasmic Pro 98.49
3py7_A 523 Maltose-binding periplasmic protein,paxillin LD1, 98.48
3oai_A 507 Maltose-binding periplasmic protein, myelin prote; 98.47
1r6z_P 509 Chimera of maltose-binding periplasmic protein AN 98.47
3iot_A449 Maltose-binding protein, huntingtin fusion protei; 98.46
3o3u_N 581 Maltose-binding periplasmic protein, advanced Gly 98.39
3f5f_A 658 Maltose-binding periplasmic protein, heparan sulfa 98.38
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 98.38
4hw8_A420 Bacterial extracellular solute-binding protein, P; 98.37
3h4z_A 568 Maltose-binding periplasmic protein fused with Al 98.36
3h3g_A 539 Fusion protein of maltose-binding periplasmic DOM 98.33
1elj_A381 Maltodextrin-binding protein; protein-carbohydrate 98.28
2gh9_A386 Maltose/maltodextrin-binding protein; MBP, maltose 98.23
3k6v_A354 Solute-binding protein MA_0280; MODA, molybdate, p 98.22
3thi_A371 Protein (thiaminase I); thiamin degradation, trans 98.16
3oo8_A415 ABC transporter binding protein ACBH; class 2 SBP 98.15
2heu_A401 Sugar ABC transporter, sugar-binding protein; peri 98.13
4h1g_A 715 Maltose binding protein-cakar3 motor domain fusio; 98.13
3mp6_A 522 MBP, SGF29, maltose-binding periplasmic protein, l 98.12
4b3n_A 602 Maltose-binding periplasmic protein, tripartite mo 98.12
2b3f_A400 Glucose-binding protein; protein-carbohydrate comp 98.04
3osq_A661 Maltose-binding periplasmic protein, green fluore 97.96
3i3v_A405 Probable secreted solute-binding lipoprotein; tran 97.9
2w7y_A430 FCSSBP, probable sugar ABC transporter, sugar-bind 97.71
4exk_A 487 Maltose-binding periplasmic protein, uncharacteri 97.69
4g68_A456 ABC transporter; transport protein; HET: XYS; 1.80 97.68
2z8f_A412 Galacto-N-biose/lacto-N-biose I transporter subst 97.65
2nvu_B 805 Maltose binding protein/NEDD8-activating enzyme E1 97.61
1eu8_A409 Trehalose/maltose binding protein; protein-carbohy 97.46
3omb_A535 Extracellular solute-binding protein, family 1; PS 97.33
3a09_A490 ALGQ1; sugar binding protein, alginate; HET: MAW B 97.26
2uvj_A408 TOGB, ABC type periplasmic sugar-binding protein; 97.12
3dm0_A 694 Maltose-binding periplasmic protein fused with RAC 96.75
4aq4_A419 SN-glycerol-3-phosphate-binding periplasmic prote; 96.53
3vlv_A502 ALGQ1; sugar binding protein, alginate; HET: MAW L 96.45
4gqo_A433 LMO0859 protein; virulence, pathogenesis, vaccine 95.86
3muq_A237 Uncharacterized conserved protein; structural geno 95.43
4gd5_A279 Phosphate ABC transporter, phosphate-binding PROT; 93.17
3lr1_A236 Tungstate ABC transporter, periplasmic tungstate- 91.25
3kn3_A242 Putative periplasmic protein; alpha-beta structure 89.88
1twy_A290 ABC transporter, periplasmic substrate-binding PR; 82.55
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes} Back     alignment and structure
Probab=100.00  E-value=2.6e-34  Score=250.85  Aligned_cols=190  Identities=23%  Similarity=0.335  Sum_probs=165.5

Q ss_pred             CCCCCChhhhcCccCCCceeeecChhHHHHHHHH-----------ccHHHHHHHHHHhccccceeccchhhhhhhcCcEE
Q 040870            3 ENGFKDWKDLWLPELAGRISMVNSPREVIGTQAA-----------AGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVW   71 (215)
Q Consensus         3 ~~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al~-----------~g~~~a~~~L~~l~~~v~~~~~~~~~~~~~~Gev~   71 (215)
                      ..+|+||+|||||+|+|++++.++.++.+++++.           .+...+.+.+..+++++..+++++..+.+++||++
T Consensus       128 ~~~~~sw~dl~dp~~kg~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~  207 (333)
T 4gl0_A          128 DKNFDTWNALFDPELKNQILLIDGAREVMGLGLNSLGYSLNDTNKAHLQAARDKLETMTPNVKAIVGDEIKLLMADNEAG  207 (333)
T ss_dssp             TCCTTSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHHGGGEEEEESTTHHHHTSCC-CC
T ss_pred             cCCcccHHhhcCHHhhhccccCCcHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhhccccceecchhhhhhhhccchh
Confidence            3578999999999999999999999998888752           13557788889999999888888888999999999


Q ss_pred             EEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCCC
Q 040870           72 IAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVK  151 (215)
Q Consensus        72 ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~~  151 (215)
                      ++++|++++..++.++.++.+++|+||+.+|+|+++|+|+|+|++            +|++||||++|||+|+.++..++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~p~eG~~~~~~~~~I~k~a~n~e------------~A~~fi~fllspe~q~~~~~~~g  275 (333)
T 4gl0_A          208 VAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDNMVIPKTAKNVD------------GAHKFINFMLKPENAAINAEYVG  275 (333)
T ss_dssp             EEEEEHHHHHHHHHHCTTEEEECCSSCEEEEEEEEECBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHHHC
T ss_pred             eehhhhHHHHHHHhhccccccccCCCCCccccceEEEEcCCCCHH------------HHHHHHHHhcCHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999998            89999999999999988777666


Q ss_pred             ChhhhhcCCCCCchhhh---cCCCCHHHhhcccccCCCCHHHHHHHHHHHHHHhCC
Q 040870          152 LPEELLKGKPSLDTKLI---AGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKP  204 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~l~---~~~p~~e~~~~~~~~~~~~~~~~~~~~~~W~~vk~~  204 (215)
                      |++.+..+.+.+++++.   .++|+.+.+.+++++.+++++..+.|+++|++||..
T Consensus       276 y~~~n~~a~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~K~~  331 (333)
T 4gl0_A          276 YATPNAKAVELLPKEISSDERFYPDMDELNNLEVYDNLGKRMLSYYNELFLEFKMY  331 (333)
T ss_dssp             CBCCBHHHHHHSCHHHHTCTTTSCCGGGGTTEECCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHhCCHHHHhCcccCCCHHHHhhCeehhcCCHHHHHHHHHHHHHHHhh
Confidence            66655554444555442   478899999999999999999999999999999964
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431} Back     alignment and structure
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A Back     alignment and structure
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A* Back     alignment and structure
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1* Back     alignment and structure
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum} Back     alignment and structure
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum} Back     alignment and structure
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A Back     alignment and structure
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1 Back     alignment and structure
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris} Back     alignment and structure
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis} Back     alignment and structure
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens} Back     alignment and structure
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A Back     alignment and structure
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli} Back     alignment and structure
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A* Back     alignment and structure
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A Back     alignment and structure
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* Back     alignment and structure
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A Back     alignment and structure
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A Back     alignment and structure
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A Back     alignment and structure
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A Back     alignment and structure
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1 Back     alignment and structure
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A* Back     alignment and structure
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans} Back     alignment and structure
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A Back     alignment and structure
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A Back     alignment and structure
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A Back     alignment and structure
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1 Back     alignment and structure
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp} Back     alignment and structure
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A Back     alignment and structure
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A* Back     alignment and structure
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli} Back     alignment and structure
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A* Back     alignment and structure
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV} Back     alignment and structure
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A* Back     alignment and structure
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A* Back     alignment and structure
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A* Back     alignment and structure
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A* Back     alignment and structure
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli} Back     alignment and structure
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A* Back     alignment and structure
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli} Back     alignment and structure
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli} Back     alignment and structure
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp} Back     alignment and structure
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli} Back     alignment and structure
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A* Back     alignment and structure
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli} Back     alignment and structure
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli} Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A Back     alignment and structure
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12} Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A* Back     alignment and structure
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli} Back     alignment and structure
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A* Back     alignment and structure
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1 Back     alignment and structure
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus} Back     alignment and structure
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A Back     alignment and structure
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A Back     alignment and structure
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A Back     alignment and structure
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A Back     alignment and structure
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} Back     alignment and structure
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A* Back     alignment and structure
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A Back     alignment and structure
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A* Back     alignment and structure
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli} Back     alignment and structure
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor} Back     alignment and structure
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} Back     alignment and structure
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ... Back     alignment and structure
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B* Back     alignment and structure
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A* Back     alignment and structure
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Back     alignment and structure
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1 Back     alignment and structure
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp} Back     alignment and structure
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A Back     alignment and structure
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli} Back     alignment and structure
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A Back     alignment and structure
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes} Back     alignment and structure
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus} Back     alignment and structure
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens} Back     alignment and structure
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens} Back     alignment and structure
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes} Back     alignment and structure
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 215
d1pota_322 c.94.1.1 (A:) Spermidine/putrescine-binding protei 6e-09
d1a99a_341 c.94.1.1 (A:) Putrescine receptor (PotF) {Escheric 2e-07
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]} Length = 322 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Spermidine/putrescine-binding protein PotD
species: Escherichia coli [TaxId: 562]

 Score = 52.4 bits (124), Expect = 6e-09
 Identities = 42/204 (20%), Positives = 69/204 (33%), Gaps = 26/204 (12%)

Query: 1   MNENGFKDWKDLWLPELAGRISMVNSPREVIGTQAAA-----------GRIAVQQNLALL 49
           ++      W DLW PE  G + + +  REV                     A    L  L
Sbjct: 118 VDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKL 177

Query: 50  GNQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIP 109
              V  F+  +    +  G+V + + W+     A +  + + VV PK G   W D  AIP
Sbjct: 178 MPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIP 237

Query: 110 AASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPEELLKGKPSLDTKLIA 169
           A ++                  + I F L+   A      +  P   L  +  L  ++  
Sbjct: 238 ANAK------------NKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVAN 285

Query: 170 G---VPPAEILARCEFLEPLSEAT 190
                P AE +   E+   +  A+
Sbjct: 286 DKTLYPDAETIKNGEWQNDVGAAS 309
>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli [TaxId: 562]} Length = 341 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
d1pota_322 Spermidine/putrescine-binding protein PotD {Escher 99.95
d1a99a_341 Putrescine receptor (PotF) {Escherichia coli [TaxI 99.8
d1xvxa_311 Ferric-binding protein FbpA {Yersinia enterocoliti 99.7
d1q35a_318 Ferric-binding protein FbpA {Mannheimia haemolytic 99.69
d1nnfa_308 Ferric-binding protein FbpA {Haemophilus influenza 99.62
d1y4ta_317 Ferric-binding protein FbpA {Campylobacter jejuni 99.51
d1y9ua_318 Ferric-binding protein FbpA {Bordetella pertussis 99.44
d1atga_231 Molybdate-binding protein, ModA {Azotobacter vinel 99.41
d1sbpa_309 Sulphate-binding protein {Salmonella typhimurium [ 99.35
d1amfa_231 Molybdate-binding protein, ModA {Escherichia coli 99.32
d1elja_380 D-maltodextrin-binding protein, MBP {Archaeon Pyro 98.36
d1ursa_367 D-maltodextrin-binding protein, MBP {Alicyclobacil 98.34
d3thia_362 Thiaminase I {Paenibacillus thiaminolyticus [TaxId 98.03
d2onsa1311 Molybdate-binding protein, ModA {Archaeoglobus ful 97.72
d1laxa_369 D-maltodextrin-binding protein, MBP {Escherichia c 97.61
d1eu8a_407 D-maltodextrin-binding protein, MBP {Archaeon Ther 97.33
d1j1na_492 Alginate-binding periplasmic protein AlgQ2 {Sphing 96.22
d1twya_249 ABC transporter, periplasmic substrate-binding pro 93.77
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Spermidine/putrescine-binding protein PotD
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.8e-28  Score=207.70  Aligned_cols=190  Identities=24%  Similarity=0.357  Sum_probs=165.4

Q ss_pred             CCCCCCChhhhcCccCCCceeeecChhHHHHHHHH-----------ccHHHHHHHHHHhccccceeccchhhhhhhcCcE
Q 040870            2 NENGFKDWKDLWLPELAGRISMVNSPREVIGTQAA-----------AGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDV   70 (215)
Q Consensus         2 ~~~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al~-----------~g~~~a~~~L~~l~~~v~~~~~~~~~~~~~~Gev   70 (215)
                      ++.+|+||+|||+++++|++.+.+.+...++.+..           .+.....+.+..+.+++..|.+++..+.+.+|++
T Consensus       119 ~~~~p~sw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  198 (322)
T d1pota_         119 DPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEV  198 (322)
T ss_dssp             CTTTCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHTGGGEEEECSSCTHHHHHTTSC
T ss_pred             CccccCcHHHHhChHhhhcccccCchhhhhHHHHHHhccCccccchhhHHHHHHHHHHhccccceeeccccccccccCcE
Confidence            46689999999999999999999988877766531           1245677888899999999888788899999999


Q ss_pred             EEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCC
Q 040870           71 WIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRV  150 (215)
Q Consensus        71 ~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~  150 (215)
                      .+++.|++.+..+.+.+.++.+.+|++|+..|+++++|+|+|+|++            +|++|||||+|||.|..++...
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~I~k~a~n~~------------~A~~fi~fl~s~e~q~~~~~~~  266 (322)
T d1pota_         199 NLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKE------------GALKLINFLLRPDVAKQVAETI  266 (322)
T ss_dssp             SEEEEEHHHHHHHHTTSCCEEEECCTTCCEEEEEEEBCBTTCTTHH------------HHHHHHHHHHSHHHHHHHHHHH
T ss_pred             EEEEEechhHHHHHhhccccceeeccCCceeeeeeeEEecCCCCHH------------HHHHHHHHHcCHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999998            9999999999999999888777


Q ss_pred             CChhhhhcCCCCCchhh---hcCCCCHHHhhcccccCCCCHHHHHHHHHHHHHHhCC
Q 040870          151 KLPEELLKGKPSLDTKL---IAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKP  204 (215)
Q Consensus       151 ~~~~~~~~~~~~~~~~l---~~~~p~~e~~~~~~~~~~~~~~~~~~~~~~W~~vk~~  204 (215)
                      ++++.+..+...+++++   +.++|+++.+.+++++.++++ ..+.|+++|++||+.
T Consensus       267 g~~p~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ag  322 (322)
T d1pota_         267 GYPTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGA-ASSIYEEYYQKLKAG  322 (322)
T ss_dssp             CCCCSBSTTTTTSCHHHHTCTTTSCCHHHHHHSEECCCCGG-GHHHHHHHHHHHTTC
T ss_pred             CCCCcCHHHHhhCCHHHHhCcccCCCHHHHhhCchhhcCHH-HHHHHHHHHHHHhCC
Confidence            77777777666666665   247888999999999999864 578999999999973
>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]} Back     information, alignment and structure
>d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia haemolytica [TaxId: 75985]} Back     information, alignment and structure
>d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella pertussis [TaxId: 520]} Back     information, alignment and structure
>d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1amfa_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1elja_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ursa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus [TaxId: 49283]} Back     information, alignment and structure
>d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2 {Sphingomonas sp. [TaxId: 28214]} Back     information, alignment and structure
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure