Citrus Sinensis ID: 040937

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
Protein Sequence
MANHLYGYSSSYGAGGGGGTPKSSAALSGVYTSRSLADAYHLSESTLRYDPDHSIYDSFRYSGYLSSQAQQPWPPGVDPTDHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMAISALDGTSTAVGEEVKGDEKESEVAPSTAV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccHHccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccHEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHHEcccEccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
manhlygysssygagggggtpkssaalsgvytsrsladayhlsestlrydpdhsiydsfrysgylssqaqqpwppgvdptdhlkrpsealyhptllgthtsigqseawystnslakrpriesasnlpvypqrpgekdcaYYMQtrtckfgdtckfdhpiwvpeggipdwkevpviasseslperpgepdcpyflktqrckfgskckfnhpkdkligssdsgngdvsalperpseppcafylkngtckfgatckfdhpkdfqlpsvgqengigeqnesviktdettgllnpgmslfshapamlhnskglpirpgeldcpfylktgsckygstcrynhpertainppaaaivhplitspaaslgisvvspaaslyqtidprlaqatlgvspslypqrpgqmecdyymktgvckfgekckfhhpidrsaaktpsqeTVKLTlaglprregavhcpyymktgtckygatckfdhpppgevmaisaldgtstavgeevkgdekesevapstav
Flexible Loop (DISEMBL)
MANHLYGYSSSYGAGGGGGTPKSSAALSGVYTSRSLADAYHLSESTLRYDPDHSIYDSFRYSGYLSSQAQQPWPPGVDPTDHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLakrpriesasnlpvypqrpGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASseslperpgepDCPYFLKTQRCKFGSKCkfnhpkdkligssdsGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPidrsaaktpsqetvkltlaglprregavHCPYYMKTGTCKYGATCKFDHPPPGEVMAISALDGTSTAVGeevkgdekesevapstav
Low Complexity Region (SEG)
MANHLygysssygagggggTPKSSAALSGVYTSRSLADAYHLSESTLRYDPDHSIYDSFRYSGYLSSQAQQPWPPGVDPTDHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMAISALDGTSTAVGEEVKGDEKESEVAPSTAV
Disordered region (IsUnstruct)
***********************************LADAYHLSESTLRYDPDHSIYDSFRYSGYL************************LYHPTLLGTHTSIGQSEAWYS*************************KDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIA*************CPYFLKTQRCKFGSKCKF*****************************CAFYLKNGTCKFGATCKFDHPKDF********************************SLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPID***********VKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDH**************************************
Disordered Region (DISOPRED)
****************************************************************************************************************************************DCAYYMQTRTCKFGDTCKFDHPI*******************************PYFLKTQRCKFGSK***************************PSEPPCAFYLKNGTCKFGAT***************************************************************LDCP**********************************************************************************************************************************VHCPYYMKTGTCKYGATCKF****************************************
Disordered Region (DISEMBL)
MANHLYGYSSSYGAGGGGGTPKSSAALSGVYTSRSLADAYHLSESTLRYDPDHSIYDSFRYSGY************VDPTDHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIAS********GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSS*************PSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMAISALDGTST*********************
Disordered Region (DISPRO)
*ANHLYGYSSSYGAGGGGGTPK***ALSGVYTSRSLADAYHLSESTLRYDPDHSIYDSFRYSGYLSSQAQQPWPPGVDPTDHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIES*SNLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPI*********************LPERPGEPDCPYFLKTQRCKFGSKCKFNHPK*************VSALPERPSEPPCAFYLKNGTCKFGATCKFDHP*************************************************GLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLY******************YPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDR*********TVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPP************************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANHLYGYSSSYGAGGGGGTPKSSAALSGVYTSRSLADAYHLSESTLRYDPDHSIYDSFRYSGYLSSQAQQPWPPGVDPTDHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMAISALDGTSTAVGEEVKGDEKESEVAPSTAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	508	2.2.26 [Sep-21-2011]
Q941Q3	524	Zinc finger CCCH domain-c	yes	no	0.767	0.744	0.644	1e-157
Q5ZDJ6	462	Zinc finger CCCH domain-c	yes	no	0.761	0.837	0.529	1e-123
Q84W91	468	Zinc finger CCCH domain-c	no	no	0.5	0.542	0.363	3e-51
Q8L7N8	375	Zinc finger CCCH domain-c	no	no	0.494	0.669	0.373	2e-50
Q9SWF9	417	Zinc finger CCCH domain-c	N/A	no	0.610	0.743	0.352	2e-47
Q5NAV3	466	Zinc finger CCCH domain-c	no	no	0.610	0.665	0.326	1e-43
Q6NPN3	465	Zinc finger CCCH domain-c	no	no	0.618	0.675	0.322	1e-42
Q9SQU4	462	Zinc finger CCCH domain-c	no	no	0.618	0.679	0.317	1e-41
Q8GXX7	397	Zinc finger CCCH domain-c	no	no	0.562	0.720	0.298	3e-41
Q5RJC5	435	Zinc finger CCCH domain-c	no	no	0.663	0.774	0.320	7e-40

>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana GN=HUA1 PE=1 SV=1

 Score =  556 bits (1434), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/416 (64%), Positives = 319/416 (76%), Gaps = 26/416 (6%)

Query: 66  SSQAQQPWPPGVDPTDHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASN 125
           ++ A +P PPGV      KR SEALY+PTLLG H +IGQ+EAWY+T+   KRP++ES S+
Sbjct: 114 AASAVEPLPPGV------KRTSEALYYPTLLGAHNTIGQTEAWYTTDYFTKRPKLESTSH 167

Query: 126 LPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERP 185
           LP+YPQR GEKDC +YMQTRTCKFG++C+FDHPIWVPEGGIPDWKE PV+  +E  PERP
Sbjct: 168 LPIYPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVP-NEEYPERP 226

Query: 186 GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGT 245
           GEPDCPY++KTQRCK+GSKCKFNHP+++   S ++ +    +LPERPSEP C FY+K G 
Sbjct: 227 GEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQD----SLPERPSEPMCTFYMKTGK 282

Query: 246 CKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNS 305
           CKFG +CKF HPKD QLPS  Q+ G      SV  T E     NP ++     PA+ HNS
Sbjct: 283 CKFGLSCKFHHPKDIQLPSSSQDIG-----SSVGLTSEPDATNNPHVTF---TPALYHNS 334

Query: 306 KGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISV 365
           KGLP+R GE+DCPFYLKTGSCKYG+TCRYNHPERTA  P AA + + L++S  A+L + +
Sbjct: 335 KGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLGL 394

Query: 366 VSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRS 425
           V+PA S YQT    L Q TLGV  + YPQRPGQ ECDYYMKTG CKFGE+CKFHHP DR 
Sbjct: 395 VTPATSFYQT----LTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRL 450

Query: 426 AAKT---PSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMA 478
           +A T   P Q  VKL+LAG PRREGA++CPYYMKTGTCKYGATCKFDHPPPGEVMA
Sbjct: 451 SAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPGEVMA 506

Involved in flower development. Functions in floral reproductive organ identity by binding AGAMOUS pre-mRNA and promoting its processing.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=Os01g0616400 PE=2 SV=2

 Score =  441 bits (1134), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/419 (52%), Positives = 284/419 (67%), Gaps = 32/419 (7%)

Query: 84  KRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYMQ 143
           +R    LYH  ++G+H+++ Q EA YS+N++ KRPR+ES+  LP+YPQRPGEKDCA+YM 
Sbjct: 59  RRSMGVLYHQPIMGSHSTVEQIEALYSSNTMTKRPRLESS--LPIYPQRPGEKDCAFYMM 116

Query: 144 TRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGS 203
           TRTCKFG +CKFDHP WVPEGGIP+WKE       ES PE+ GEPDCP+F+KT +CKFGS
Sbjct: 117 TRTCKFGGSCKFDHPQWVPEGGIPNWKEQ-AANVEESYPEQEGEPDCPFFMKTGKCKFGS 175

Query: 204 KCKFNHPKDKLIGSSDSGN-------GDVSALPERPSEPPCAFYLKNGTCKFGATCKFDH 256
           KCKFNHPK+K + +  SGN        D S LP RPSEP C+FY K G CKF A CKF+H
Sbjct: 176 KCKFNHPKEK-VNALASGNTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNH 234

Query: 257 PKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSH-----APAMLHNSKGLPIR 311
           PKD ++PS   E       ES +  +  T + +   S+ +      A A   NSKGLP+R
Sbjct: 235 PKDIEIPSSQNE------PESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMR 288

Query: 312 PGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAAS 371
           PGE+DCPFY+K GSCK+GSTCR+NHP+R  +N P   +   ++ +P + L    ++ +A+
Sbjct: 289 PGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFP-LPLGQTILPTPESML----LNSSAN 343

Query: 372 LYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAK--- 428
             Q  D   A   +G  P  YPQRPG   CD+YMKTG CKF ++CKFHHPIDRSA     
Sbjct: 344 FMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSA 403

Query: 429 --TPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMAISALDGT 485
              P++E+V+LTLAGLPRRE AV C +YMKTG CK+G  CKFDHPPP E +A  +  G+
Sbjct: 404 NWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQEAIAKVSNSGS 462

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2

 Score =  203 bits (516), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 178/363 (49%), Gaps = 109/363 (30%)

Query: 178 SESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPC 237
           S+S PERPG PDC Y+++T  C +G++C++NHP+D+   S ++        PER  EPPC
Sbjct: 39  SDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDR--ASVEATVRATGQYPERFGEPPC 96

Query: 238 AFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSH 297
            FYLK GTCKFGA+CKF HPK                              N G S+ SH
Sbjct: 97  QFYLKTGTCKFGASCKFHHPK------------------------------NAGGSM-SH 125

Query: 298 APAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPE--RTAINPPAAAI--VHPL 353
            P  ++   G P+R G+ +C +YLKTG CK+G TC+++HP+   T + PP A+    +P 
Sbjct: 126 VPLNIY---GYPVREGDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFYPS 182

Query: 354 ITS--------PAASLGISV---------------------------------VSP---- 368
           + S        P++SL ++                                  VSP    
Sbjct: 183 VQSLMPDQYGGPSSSLRVARTLLPGSYMQGAYGPMLLTPGVVPIPGWSPYSAPVSPALSP 242

Query: 369 -------AASLYQTIDPRLAQATL-GVSPSL------------YPQRPGQMECDYYMKTG 408
                  A SLY          +L GV PSL            +P+RPG+ EC YY+KTG
Sbjct: 243 GAQHAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTG 302

Query: 409 VCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKF 468
            CKFG  CKFHHP DR     P +    L+  GLP R G   C +Y++ G CK+G+TCKF
Sbjct: 303 DCKFGTSCKFHHPRDR----VPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKF 358

Query: 469 DHP 471
           DHP
Sbjct: 359 DHP 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2

 Score =  200 bits (509), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/319 (37%), Positives = 165/319 (51%), Gaps = 68/319 (21%)

Query: 180 SLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKD-KLIGSSDSGNGDVSALPERPSEPPCA 238
           S PER GEPDC Y+++T  C+FGS C+FNHP D KL+ ++    G+    PER  +P C 
Sbjct: 38  SYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGE---YPERIGQPECE 94

Query: 239 FYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHA 298
           FYLK GTCKFG TCKF HP+                N++ I    +  +L+         
Sbjct: 95  FYLKTGTCKFGVTCKFHHPR----------------NKAGIDGSVSVNVLS--------- 129

Query: 299 PAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPA 358
                     P+RP E DC ++L+ G CK+G TC++NHP+  + N   +    P+ ++  
Sbjct: 130 ---------YPLRPNEDDCSYFLRIGQCKFGGTCKFNHPQTQSTNLMVSVRGSPVYSALQ 180

Query: 359 ASLGISVVSPAASLYQTIDPRL---------AQATLGVS-----------------PSLY 392
           +  G    S + + +    PRL         +Q  L  S                  +++
Sbjct: 181 SLTGQPSYSWSRTSFVANPPRLQDPSGFASGSQGGLFSSGFHSGNSVPLGFYALPRENVF 240

Query: 393 PQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCP 452
           P+RPGQ EC +YMKTG CKFG  CKFHHP DR   +TP  + V L+  GLP R G   C 
Sbjct: 241 PERPGQPECQFYMKTGDCKFGTVCKFHHPRDR---QTPPPDCV-LSSVGLPLRPGEPLCV 296

Query: 453 YYMKTGTCKYGATCKFDHP 471
           +Y + G CK+G +CKFDHP
Sbjct: 297 FYSRYGICKFGPSCKFDHP 315

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1

 Score =  190 bits (483), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/357 (35%), Positives = 181/357 (50%), Gaps = 47/357 (13%)

Query: 129 YPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSE-SLPERPGE 187
           YP+ PGE DC+YY++T  C+FG TC+F+HP        P+ K     A  +   PER G+
Sbjct: 27  YPEHPGEPDCSYYIRTGLCRFGATCRFNHP--------PNRKLAIATARMKGEFPERLGQ 78

Query: 188 PDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCK 247
           P+C Y+LKT  CKFG+ C+F+HPKDK  G +     ++   P RP+E   A+YL+ G CK
Sbjct: 79  PECQYYLKTGTCKFGATCRFHHPKDK-AGVAGRVALNILGYPLRPNESERAYYLRTGQCK 137

Query: 248 FGATCKFDHPKDFQL----------PSVGQENGIGEQNESVIKTDETTGLLNPG---MSL 294
           FG TCKF HP+   +          P+V      G+Q+ +   T+ ++    P       
Sbjct: 138 FGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYAAGITNWSSSSYVPSPRWQGP 197

Query: 295 FSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLI 354
            S+AP +L          G +  P     G   YG       P++T  N       H   
Sbjct: 198 SSYAPLILPQ--------GVVSVP-----GWSTYGGQMGSESPQQTMRNDQTYGTSH--- 241

Query: 355 TSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGE 414
                 L  + +  A S Y++    +    L    +++P+RP Q EC +YMKTG CKFG 
Sbjct: 242 ---QGELENAGLQGAYSQYRSGSVPVGFYALQRD-NIFPERPDQPECQFYMKTGDCKFGA 297

Query: 415 KCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHP 471
            C+FHHP +R   + P+ + V L+  GLP R G   C +Y + G CK+G +CKFDHP
Sbjct: 298 VCRFHHPRER---QIPAPDCV-LSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 350

Pisum sativum (taxid: 3888)

>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1

 Score =  177 bits (450), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 169/355 (47%), Gaps = 45/355 (12%)

Query: 130 PQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPD 189
           P+RPGE DC YY++T  C +G+ C+++HP       + +         S   PERPG+P 
Sbjct: 49  PERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAVLNGGGK--TTHSAEYPERPGQPV 106

Query: 190 CPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFG 249
           C Y++K   CKFGS CK++HP++   GS  +   + S  P R  E  C +Y+K G CKFG
Sbjct: 107 CEYYMKNGTCKFGSNCKYDHPRE---GSVQAVMLNSSGYPLRSGEKDCTYYVKTGHCKFG 163

Query: 250 ATCKFDHPK--------DFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAM 301
           +TCKF HP+        +   P   Q        + +         + PG  L    P M
Sbjct: 164 STCKFHHPEIGGVSETPNMYPPVQPQPISSSHPYQHLAGWQMGRPPVLPGSFLSGSYPPM 223

Query: 302 LHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASL 361
           +  S  +P++                      +N P  + +N  A+A  H  + +     
Sbjct: 224 MLPSTVVPMQ---------------------GWN-PYISPVNQVASAGGHQTVQA-GPFY 260

Query: 362 GISVVSPAASL-----YQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKC 416
           G+S   P+A++     Y  +      ++       +P RPGQ EC YY+KTG CKFG  C
Sbjct: 261 GLSHQGPSAAVTYGSQYAPLSSSTMPSSSSKQEPAFPARPGQPECQYYLKTGSCKFGSAC 320

Query: 417 KFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHP 471
           K+HHP   +  K+       L+  GLP R G+  C YY + G CK+G TCKFDHP
Sbjct: 321 KYHHPQYLNTPKS----NCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHP 371

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1

 Score =  175 bits (443), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 177/353 (50%), Gaps = 39/353 (11%)

Query: 128 VYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSES----LPE 183
            +P+RP E DC YY++T  C +G  C+F+HP              PV+    +     PE
Sbjct: 47  TFPERPDEPDCIYYLRTGVCGYGSRCRFNHP----------RNRAPVLGGLRTEAGEFPE 96

Query: 184 RPGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDS-GNGDVSALPERPSEPPCAFYLK 242
           R G+P C +F++T  CKFG+ CK++HP+    G S +  + +    P RP E  C+++++
Sbjct: 97  RMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMR 156

Query: 243 NGTCKFGATCKFDH--PKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPA 300
            G CKFG+TC++ H  P   Q PS  Q+  +             T   +    +    P 
Sbjct: 157 TGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPSLQSQTVPSSQQYGVVLARPQ 216

Query: 301 MLHNS-KGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAA 359
           +L  S    P   G++     L  G   Y       +P + +++   +    P + + ++
Sbjct: 217 LLPGSYVQSPYGYGQM----VLPPGMVPYSGW----NPYQASVSAMPSPGTQPSMGT-SS 267

Query: 360 SLGISVVSPAASLYQTIDPRLAQATLGVS--PSLYPQRPGQMECDYYMKTGVCKFGEKCK 417
             GI+ +SP+A  YQ+       ++ GVS     +PQRP Q EC Y+M+TG CKFG  C+
Sbjct: 268 VYGITPLSPSAPAYQS-----GPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCR 322

Query: 418 FHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDH 470
           FHHP++ +     S E   L+  GLP R GAV C ++ + G CK+G  CKFDH
Sbjct: 323 FHHPMEAA-----SPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDH 370

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2

 Score =  171 bits (432), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 171/356 (48%), Gaps = 42/356 (11%)

Query: 129 YPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEP 188
           YP+RP E DC YY++T  C +G  C+F+HP     G +       V   + +LPER G P
Sbjct: 51  YPERPDEPDCIYYLRTGVCGYGSRCRFNHP--RDRGAVIGG----VRGEAGALPERMGHP 104

Query: 189 DCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSAL-------PERPSEPPCAFYL 241
            C +F++T  CKFG+ CK++HP+         G G V+ +       P RP E  C++YL
Sbjct: 105 VCQHFMRTGTCKFGASCKYHHPRQ------GGGGGSVAPVSLSYLGYPLRPGEKECSYYL 158

Query: 242 KNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMS------LF 295
           + G CKFG TC+F+HP    +    Q+    +             L +  +       L 
Sbjct: 159 RTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQSQSIPSSQQYGLV 218

Query: 296 SHAPAMLHNSK-GLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLI 354
              P+ L  S    P  P     P  L  G   Y       +P + +++   +    P I
Sbjct: 219 LTRPSFLTGSYLQSPYGP-----PMVLPPGMVPYSGW----NPYQASLSAMPSPGTQPSI 269

Query: 355 TSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGE 414
            S ++  G++ +SP+A+ Y      +  +    +   +PQRP Q EC Y+M+TG CKFG 
Sbjct: 270 GS-SSIYGLTPLSPSATAYTGTYQSVPSSN--STSKEFPQRPDQPECQYFMRTGDCKFGS 326

Query: 415 KCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDH 470
            C++HHP+D      P +  + L+  GLP R G   C ++ + G CK+G  CKFDH
Sbjct: 327 SCRYHHPVD----AVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1

 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 187/415 (45%), Gaps = 129/415 (31%)

Query: 102 IGQSEAWYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWV 161
           + Q   W    +L+    +E+ S    YP+RPGE DC+YY++T  C+FG TC+F+H    
Sbjct: 16  MNQDAMW--QMNLSSDETMETGS----YPERPGEPDCSYYIRTGLCRFGSTCRFNH---- 65

Query: 162 PEGGIPDWKEVPVIASSE---SLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSS 218
                P  +E+ VIA++      PER G+P+C Y+LKT  CKFG  CKF+HP++K  G +
Sbjct: 66  -----PRDREL-VIATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNK-AGIA 118

Query: 219 DSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPK----DFQLPSVGQE------ 268
              + ++   P R +E  CA++L+ G CKFG TCKF+HP+    +  +P+ GQ+      
Sbjct: 119 GRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWSR 178

Query: 269 ------------------------------------------NGIG-EQNESVIKTDETT 285
                                                     +G G +QN   ++ +ET 
Sbjct: 179 ASFIASPRWQDPSSYASLIMPQGVVPVQGWNPYSGQLGSVSPSGTGNDQNYRNLQQNETI 238

Query: 286 ----------GLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYN 335
                        NPG S+       L      P RPG+ +C FY+KTG CK+G+ C+++
Sbjct: 239 ESGSQSQGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFH 298

Query: 336 HPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQR 395
           HP      PP   +         +S+G+                             P R
Sbjct: 299 HPRDRQAPPPDCLL---------SSIGL-----------------------------PLR 320

Query: 396 PGQMECDYYMKTGVCKFGEKCKFHHPI-----DRSAAKTPSQETVKLTLAGLPRR 445
           PG+  C +Y + G+CKFG  CKF HP+     D +A++T   + V  T  G  RR
Sbjct: 321 PGEPLCVFYTRYGICKFGPSCKFDHPMRVFTYDNTASET---DEVVETSTGKSRR 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2

 Score =  165 bits (418), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 176/377 (46%), Gaps = 40/377 (10%)

Query: 126 LPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERP 185
           + VYP RP  +DC++YM+T +CK+G +CKF+HP+      +   +E   +   +   E P
Sbjct: 95  MMVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPV---RRKLQIGRER--VRERDEDVENP 149

Query: 186 GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGT 245
              +C Y+ +T  CK+G  C+F+H K+    +S     +   LP RP E  C FY++NG+
Sbjct: 150 KLMECKYYFRTGGCKYGESCRFSHMKEHNSPAS-VPELNFLGLPIRPGEKECPFYMRNGS 208

Query: 246 CKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNS 305
           CKFG+ CKF+HP             IG  +  + +        N G S    AP+   ++
Sbjct: 209 CKFGSDCKFNHP---------DPTAIGGVDSPLYRG-------NNGGSFSPKAPSQASST 252

Query: 306 KGLPIR--PGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGI 363
                R   G    PF         G T     P+ +  N   A+  +P   SP A    
Sbjct: 253 SWSSTRHMNGTGTAPFIPSMFPHSRGVT-----PQASDWNGYQASSAYPPERSPLAPSSY 307

Query: 364 SVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPID 423
            V +   SL +T     +Q    +S   +P+RP Q EC YY+KTG CKF  KCK+HHP +
Sbjct: 308 QVNN---SLAETSS--FSQYQHQMSVEEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKN 362

Query: 424 RSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMAISALD 483
           R     P Q        GLP R     C +Y + G CK+G  C+FDH  P      S+  
Sbjct: 363 R----LPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDHSIPPTFSPSSSQT 418

Query: 484 GTSTAVGEEVKGDEKES 500
             +  VG    G+E +S
Sbjct: 419 VEARQVG--ANGNEDDS 433

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	508
225462348	535	PREDICTED: zinc finger CCCH domain-conta	0.966	0.917	0.607	0.0
255575514	500	conserved hypothetical protein [Ricinus	0.828	0.842	0.704	1e-178
224109138	532	predicted protein [Populus trichocarpa]	0.927	0.885	0.625	1e-178
449461124	527	PREDICTED: zinc finger CCCH domain-conta	0.966	0.931	0.586	1e-168
356554798	507	PREDICTED: zinc finger CCCH domain-conta	0.799	0.800	0.659	1e-160
224101283	474	predicted protein [Populus trichocarpa]	0.781	0.837	0.685	1e-159
356523523	508	PREDICTED: zinc finger CCCH domain-conta	0.795	0.795	0.660	1e-159
297834072	519	enhancer of ag-4 1 [Arabidopsis lyrata s	0.767	0.751	0.644	1e-156
22331028	524	zinc finger CCCH domain-containing prote	0.767	0.744	0.644	1e-156
110738176	522	floral homeotic protein HUA1 [Arabidopsi	0.767	0.747	0.644	1e-156

>gi|225462348|ref|XP_002269152.1| PREDICTED: zinc finger CCCH domain-containing protein 37 [Vitis vinifera] gi|297736083|emb|CBI24121.3| unnamed protein product [Vitis vinifera]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/542 (60%), Positives = 393/542 (72%), Gaps = 51/542 (9%)

Query: 1   MANHLYGYSSSYGAGGGGGTPKSSAALSGVYTSRSLADAY----------------HLSE 44
           MAN LYGY+ SYGA        +++ LS VY SRS+ D +                HLS 
Sbjct: 1   MANQLYGYNPSYGA--------AASNLSSVYPSRSVTDPFLSDSSLLSSSRYLSSDHLSS 52

Query: 45  STLRY---DPDHSIYDSFRYS-----GYLSSQAQQPWPPGVDPTDH-------------- 82
               Y   +   S++D  R+S     G  +  ++ P   G   + H              
Sbjct: 53  DPSYYSVTERHSSMFDGLRFSASDIGGAGAFSSRIPGGIGASVSTHGVDVGASVDPLVAG 112

Query: 83  LKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYM 142
           LKR SEALYHP++LG H +IGQSEAW+STNSLAKRPR ESASNLP+YPQRPGEKDCA+YM
Sbjct: 113 LKRSSEALYHPSVLGAHNTIGQSEAWFSTNSLAKRPRFESASNLPIYPQRPGEKDCAHYM 172

Query: 143 QTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFG 202
            TRTCKFGD+CKFDHPIWVPEGGIPDWKEVP++A++E LP+RPGEPDCPYF+KTQ+CKFG
Sbjct: 173 LTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPIVAANEFLPQRPGEPDCPYFMKTQKCKFG 232

Query: 203 SKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQL 262
            KCKFNHPKD++I      N DV  LPERPSE PCAFY+K G CKFGATCKF HPKD Q+
Sbjct: 233 HKCKFNHPKDQIISLGAPENTDVFVLPERPSELPCAFYVKTGKCKFGATCKFHHPKDIQI 292

Query: 263 PSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLK 322
            S G+ N  GEQ E+  K   TTG +   +S+    PA++HNSKGLP+R GE+DCPFYLK
Sbjct: 293 ASTGKNNADGEQAETGAKGAGTTGDVKLPVSV---TPALVHNSKGLPMRLGEVDCPFYLK 349

Query: 323 TGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQ 382
           TGSCKYG+TCRYNHP+R AINPPAAAI H ++ SPAA+L + VV+P  S+   IDPRL+Q
Sbjct: 350 TGSCKYGATCRYNHPDRNAINPPAAAIGHAIVASPAANLNVGVVNPVTSILHPIDPRLSQ 409

Query: 383 ATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSA-AKTPSQETVKLTLAG 441
            T+GV P++YPQRPGQMECD+YMKTG CKFGE+CKFHHPIDRSA   T  Q+ ++LTLAG
Sbjct: 410 -TMGVGPTIYPQRPGQMECDFYMKTGECKFGERCKFHHPIDRSAPTATKLQQNIRLTLAG 468

Query: 442 LPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMAISALDGTSTAVGEEVKGDEKESE 501
            PRREG + CP+Y+KTGTCKYG TCKFDHPPPGEVMA++   G ST+ GEE  GDEKE E
Sbjct: 469 FPRREGTIICPFYLKTGTCKYGVTCKFDHPPPGEVMAMATSQGASTSAGEEANGDEKEDE 528

Query: 502 VA 503
            A
Sbjct: 529 TA 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575514|ref|XP_002528658.1| conserved hypothetical protein [Ricinus communis] gi|223531909|gb|EEF33724.1| conserved hypothetical protein [Ricinus communis]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 310/440 (70%), Positives = 352/440 (80%), Gaps = 19/440 (4%)

Query: 72  PW--PPGVDP---------TDHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRI 120
           PW  PPGVD             LKR SE LYHPT++G H +IGQ+EAWYSTN L KR R 
Sbjct: 59  PWTPPPGVDVPPASIEPHLLAGLKRSSEVLYHPTVMGAHNTIGQTEAWYSTNYLTKRSRF 118

Query: 121 ESASNLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSES 180
           ESASN  +YPQRPGEKDCA+YM TRTCKFGD+CKFDHP+WVPEGGIP+WKEVP+ A++E 
Sbjct: 119 ESASNYSIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPNWKEVPLAATTEP 178

Query: 181 LPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL-IGSSDSGNGDVSALPERPSEPPCAF 239
           LPERPGEPDCPYFLKTQRCK+GSKCKFNHPKD+L +GSS S   DV ALPERPSEP CAF
Sbjct: 179 LPERPGEPDCPYFLKTQRCKYGSKCKFNHPKDELALGSSQS--NDVFALPERPSEPICAF 236

Query: 240 YLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAP 299
           Y K G CKFGATCKF HPKD Q+ ++GQEN    QNE+   T  TTG +N   +  S   
Sbjct: 237 YAKTGRCKFGATCKFHHPKDIQI-ALGQENCNIMQNEAAAMTHGTTGDVNAVKACISFNQ 295

Query: 300 AMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAA 359
           A+LHNSKGLPIRPGE+DCPFYLKTGSCKYG+TCRYNHP+R AINPPAAAI HPL+ SPAA
Sbjct: 296 ALLHNSKGLPIRPGEVDCPFYLKTGSCKYGATCRYNHPDRNAINPPAAAIGHPLLASPAA 355

Query: 360 SLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFH 419
           +L +  ++PAAS+YQ I P  +   LGV P++YPQRPG  ECDYYMKTG CKFGE+C+FH
Sbjct: 356 NLNLGDINPAASIYQAIYPSFSSPMLGVGPTIYPQRPGHAECDYYMKTGECKFGERCRFH 415

Query: 420 HPIDRSA--AKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVM 477
           HPIDRSA  A    Q+ VKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVM
Sbjct: 416 HPIDRSAPTATQAQQQAVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVM 475

Query: 478 AISALDGTSTAVGEEVKGDE 497
           AI++  GTST+ G +V+G E
Sbjct: 476 AIAS-QGTSTSAG-DVEGAE 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109138|ref|XP_002315096.1| predicted protein [Populus trichocarpa] gi|222864136|gb|EEF01267.1| predicted protein [Populus trichocarpa]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 323/516 (62%), Positives = 370/516 (71%), Gaps = 45/516 (8%)

Query: 2   ANHLYGYSSSYGAGGGGGTPKSSAALSGVYTSRSLADAY--------------------- 40
           AN LYGY      G    T  +S +L+  Y + S+   Y                     
Sbjct: 16  ANQLYGY------GATATTTSASRSLTDSYLTDSVLTRYSGTGSDPLSSDSSKYSVSSSM 69

Query: 41  --HLSESTLRYDPDHSIYDSFRYSGYLSSQAQQPWPPGVDP-------TDHLKRPSEALY 91
               S++ LRY  D  I  +   +      +  P PPGVD           LKR  E LY
Sbjct: 70  YLKQSDTALRYSVDRGIASASAAATSPHFSSWTP-PPGVDVPPAVESLVPGLKRTPEVLY 128

Query: 92  HPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYMQTRTCKFGD 151
           HPTLLG H++IGQSE WYSTNSLAKR R E+ S+ P+YPQRPGEKDCA+YM TRTCKFGD
Sbjct: 129 HPTLLGAHSTIGQSEDWYSTNSLAKRVRFETTSHFPIYPQRPGEKDCAHYMLTRTCKFGD 188

Query: 152 TCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPK 211
           TCKFDHP+WVPEGGIPDWKEVP+IA+SE+ PERPGEPDCPYFLKTQRCK+G  CKFNHPK
Sbjct: 189 TCKFDHPVWVPEGGIPDWKEVPLIATSETFPERPGEPDCPYFLKTQRCKYGLNCKFNHPK 248

Query: 212 DKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGI 271
           +KL    DS N  VSALPERPSEPPCAFY+K G CKFGA+CKF HPKD Q+P  G  N  
Sbjct: 249 EKL-SLGDSENSSVSALPERPSEPPCAFYMKTGKCKFGASCKFHHPKDIQIPLSGLGNDN 307

Query: 272 GEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGST 331
           G Q +SV+K +  TG ++   S  +  PA+ HNSKGLPIR GE+DCPFYLKTGSCKYG+T
Sbjct: 308 GVQTDSVVKNEGITGDVDVIYSPVT--PALHHNSKGLPIRLGEVDCPFYLKTGSCKYGAT 365

Query: 332 CRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSL 391
           CRYNHPERTAINPPAAAI HP++    A+L   V +PAAS+YQTIDPRL+   LGV P+ 
Sbjct: 366 CRYNHPERTAINPPAAAIGHPIVAPSLANLNFGVFNPAASIYQTIDPRLSM--LGVGPTF 423

Query: 392 YPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSA--AKTPSQETVKLTLAGLPRREGAV 449
           YPQRPGQ ECD+YMKTG CKFGE+CKFHHPIDRSA   K   Q+TVKLTLAGLPRREGAV
Sbjct: 424 YPQRPGQTECDFYMKTGECKFGERCKFHHPIDRSAPTEKQIQQQTVKLTLAGLPRREGAV 483

Query: 450 HCPYYMKTGTCKYGATCKFDHPPPGEVMAI-SALDG 484
           HCPYYMKTG CKYGATCKFDHPPPGEVMA+ ++LD 
Sbjct: 484 HCPYYMKTGACKYGATCKFDHPPPGEVMAVATSLDA 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461124|ref|XP_004148293.1| PREDICTED: zinc finger CCCH domain-containing protein 37-like [Cucumis sativus]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 314/535 (58%), Positives = 377/535 (70%), Gaps = 44/535 (8%)

Query: 1   MANHLYGYSSSYGAGGGGGTPKSSAALSGVY-TSRSLADA----YHLSES-TLRYDPDHS 54
           MAN L+ Y+S+YGA     T  +  +L   Y TSRSL+D     Y L +S +      HS
Sbjct: 1   MANQLHSYNSAYGAVSASATATAVPSLPTTYSTSRSLSDIVSGRYLLPDSLSSGISIKHS 60

Query: 55  IYDSFRYSGYLSSQAQQPWPPGVD---PTDHL----------------------KRPSEA 89
           + D  R +   S+Q + P     D    T HL                      KR S+ 
Sbjct: 61  VTD--RGTSMYSTQKEGPMLSSADIVPRTSHLVSQFSWPGSHVAAALDSVVSGIKRSSDV 118

Query: 90  LYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYMQTRTCKF 149
           LY  T+LG++ ++GQSEAWY++NSLAKRPR ES SNLPVYPQRPGEKDCA+YM TRTCKF
Sbjct: 119 LYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKF 178

Query: 150 GDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNH 209
           GD+CKFDHPIWVPEGGIPDWKEVP IA+SE LPER G+PDCPYFLKTQRCKFGS+CKFNH
Sbjct: 179 GDSCKFDHPIWVPEGGIPDWKEVPQIANSEDLPERLGDPDCPYFLKTQRCKFGSRCKFNH 238

Query: 210 PKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQEN 269
           PKD+   S  +   D S+LPERPSEP CAFY+K G CKFG  CKF HPKD Q+ S G+E 
Sbjct: 239 PKDR-SDSVGAEKSDASSLPERPSEPLCAFYVKTGNCKFGINCKFHHPKDIQILS-GEEY 296

Query: 270 GIGEQNESVIKTDETTG---LLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSC 326
           G  EQ   ++KT+E  G   L+ P +SL   +PA++HNSKGLPIRPGE+DCPFYLKTGSC
Sbjct: 297 GNSEQT-LMVKTEERAGDFKLVKPPISL---SPAIMHNSKGLPIRPGEVDCPFYLKTGSC 352

Query: 327 KYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLG 386
           KYG+TCRYNHP+R AINP   A+VHP + S  A++    V+P+ ++YQ +DPRL Q  LG
Sbjct: 353 KYGTTCRYNHPDRNAINPSTPAMVHPAMVS-TANMNTGFVNPSNAIYQAVDPRLIQPLLG 411

Query: 387 VSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRRE 446
              S+YPQRPGQ+ECD+YMKTG CKFGE+CKFHHPIDRSA K  +   VKLTLAGLPRRE
Sbjct: 412 SGSSIYPQRPGQIECDFYMKTGDCKFGERCKFHHPIDRSAPKQGALHNVKLTLAGLPRRE 471

Query: 447 GAVHCPYYMKTGTCKYGATCKFDHPPPGEVMAISALDGTSTAVGEEVKGDEKESE 501
            A+ CPYY+KTGTCKYG TCKFDHPPPGEVM ++A+       GE+ + DE   E
Sbjct: 472 EAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGED-RIDESVDE 525

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554798|ref|XP_003545729.1| PREDICTED: zinc finger CCCH domain-containing protein 37-like [Glycine max]

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/420 (65%), Positives = 323/420 (76%), Gaps = 14/420 (3%)

Query: 83  LKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYM 142
           LKR SEALYHPT+LGT   IGQSEAWYSTN LAKRPR ESASN+ +YPQRPGEKDCA+YM
Sbjct: 99  LKRSSEALYHPTILGT---IGQSEAWYSTNPLAKRPRYESASNMTIYPQRPGEKDCAHYM 155

Query: 143 QTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFG 202
            TRTCKFGD+CKFDHP+WVPEGGIPDWKEVP + +SE+ PERPGEPDCPYFLKTQRCKFG
Sbjct: 156 LTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFG 215

Query: 203 SKCKFNHPKDKLIGSSDSGNGDVSA-LPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQ 261
           SKCKFNHPK        S N DVS+ LPERPSEPPCAFY+K G C++G  CKF HPKD Q
Sbjct: 216 SKCKFNHPK------VSSENADVSSGLPERPSEPPCAFYMKTGKCRYGTACKFHHPKDIQ 269

Query: 262 LPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYL 321
           +      +    Q ++       TG   P  SL S +   L NSKGLP+R GE+DCPFY+
Sbjct: 270 IQLSDDLSQNVAQTQTNSMMGGATGDTQPIKSLISPS---LQNSKGLPVRLGEVDCPFYM 326

Query: 322 KTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLA 381
           KTGSCKYG +CRYNHP+R AINPP A +   ++ S AA+L I +++PA S YQ  +PRL+
Sbjct: 327 KTGSCKYGVSCRYNHPDRNAINPPIAGLGASILPSSAANLNIGLLNPAVSAYQAFEPRLS 386

Query: 382 QATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAG 441
              +G++ ++YPQRPGQ+ECD+YMKTGVCKFGE+CK+HHPIDRSA     Q TVKLT AG
Sbjct: 387 NPMVGIAETIYPQRPGQIECDFYMKTGVCKFGERCKYHHPIDRSALSLSKQATVKLTPAG 446

Query: 442 LPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMAISALDGTSTAVGEEVKGDEKESE 501
           LPRREG V CPYY+KTGTCK+GATCKFDHPPPGEVM ++   GTS A GEE +GD    E
Sbjct: 447 LPRREGDVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTS-ANGEEAEGDTSALE 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101283|ref|XP_002312214.1| predicted protein [Populus trichocarpa] gi|222852034|gb|EEE89581.1| predicted protein [Populus trichocarpa]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/416 (68%), Positives = 322/416 (77%), Gaps = 19/416 (4%)

Query: 43  SESTLRYDPDHSIYDSFRY--SGYLSSQAQQPWPPGVDP-------TDHLKRPSEALYHP 93
           S+S LRY  D  I  +     S +LSS    P PPGVD           LKR  E LYHP
Sbjct: 59  SDSALRYSVDRGIASAAAAATSPHLSSW---PPPPGVDAPSAVDSLVPGLKRTPEVLYHP 115

Query: 94  TLLGTHTSIGQSEAWYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYMQTRTCKFGDTC 153
           TLLG H++IGQSE WYSTN+LAKR R E+ S+LP+YPQRPGEKDCAYYM TRTCKFGDTC
Sbjct: 116 TLLGAHSTIGQSEDWYSTNALAKRARFETTSHLPIYPQRPGEKDCAYYMLTRTCKFGDTC 175

Query: 154 KFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDK 213
           KFDHP+WVPEGGIPDWKEVP IA+SE+ P+RPG PDCPYFLKTQRCK+G  CKFNHPK+K
Sbjct: 176 KFDHPVWVPEGGIPDWKEVPPIATSETFPDRPGVPDCPYFLKTQRCKYGLNCKFNHPKEK 235

Query: 214 L-IGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIG 272
           + +G S+  N  +SALPERPSEPPCAFY+K G CKFGATCKF HPKD Q+   GQ N  G
Sbjct: 236 MSLGVSE--NTSISALPERPSEPPCAFYMKTGICKFGATCKFHHPKDIQISLAGQGNDDG 293

Query: 273 EQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTC 332
            Q  SV+     TG +N   +L S  PA+LHNSKGLP+RPGE+DCPFYLKTGSCKYG+TC
Sbjct: 294 VQTNSVVDNGGITGDVNVIKALVSVTPALLHNSKGLPMRPGEVDCPFYLKTGSCKYGATC 353

Query: 333 RYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLY 392
           RYNHPERTAINPPAAAI HP+I    A+L + V SPAAS+YQTIDPRL  +TLGV P++Y
Sbjct: 354 RYNHPERTAINPPAAAIGHPIIAPSMANLNLGVFSPAASIYQTIDPRL--STLGVGPTVY 411

Query: 393 PQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSA--AKTPSQETVKLTLAGLPRRE 446
           PQRPGQ ECD+YMKTG CKFGE CKFHHPIDRSA  AK    +TVKLTLAGLPRRE
Sbjct: 412 PQRPGQAECDFYMKTGECKFGETCKFHHPIDRSAPTAKQTEPQTVKLTLAGLPRRE 467

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523523|ref|XP_003530387.1| PREDICTED: zinc finger CCCH domain-containing protein 37-like [Glycine max]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 278/421 (66%), Positives = 326/421 (77%), Gaps = 17/421 (4%)

Query: 83  LKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYM 142
           LKR S+ALYHPT+LGT   IGQSEAWYSTN LAKRPR ESASN+ +YPQRPGEKDCA+YM
Sbjct: 98  LKRSSDALYHPTILGT---IGQSEAWYSTNPLAKRPRYESASNMTIYPQRPGEKDCAHYM 154

Query: 143 QTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFG 202
            TRTCKFGD+CKFDHP WVPEGGIPDWKEVP++ +SE+ PERPGEPDCPYFLKTQRCKFG
Sbjct: 155 LTRTCKFGDSCKFDHPFWVPEGGIPDWKEVPIV-TSETPPERPGEPDCPYFLKTQRCKFG 213

Query: 203 SKCKFNHPKDKLIGSSDSGNGDVSA-LPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQ 261
           SKCKFNHPK        S N DVS+ LPERPSEPPCAFY+K G C++GA CKF HPKD Q
Sbjct: 214 SKCKFNHPK------VSSENADVSSGLPERPSEPPCAFYMKTGKCRYGAACKFHHPKDIQ 267

Query: 262 LPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYL 321
           +      +    Q ++       TG   P  SL S +   L NSKGLP+R GE+DCPFY+
Sbjct: 268 IQLSNDSSQTVAQTQTNSIMGWATGDTPPIQSLISPS---LQNSKGLPVRLGEVDCPFYM 324

Query: 322 KTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLA 381
           KTGSCKYG TCRYNHP+R AINPP A +   +  S AA+L I +++PA S+YQ  +PRL+
Sbjct: 325 KTGSCKYGVTCRYNHPDRNAINPPIAGLGASIFPSSAANLNIGLLNPAVSVYQAFEPRLS 384

Query: 382 Q--ATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTL 439
              + +G++ ++YPQRPGQ+ECD+YMKTG CKFGE+CK+HHPIDRSA     Q TVKLT 
Sbjct: 385 NPMSQVGIADTIYPQRPGQIECDFYMKTGECKFGERCKYHHPIDRSAPSLSKQATVKLTP 444

Query: 440 AGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMAISALDGTSTAVGEEVKGDEKE 499
           AGLPRREGAV CPYY+KTGTCK+GATCKFDHPPPGEVM ++   GTS A G E +GDE E
Sbjct: 445 AGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTS-ANGGEAEGDEIE 503

Query: 500 S 500
           +
Sbjct: 504 T 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834072|ref|XP_002884918.1| enhancer of ag-4 1 [Arabidopsis lyrata subsp. lyrata] gi|297330758|gb|EFH61177.1| enhancer of ag-4 1 [Arabidopsis lyrata subsp. lyrata]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 268/416 (64%), Positives = 318/416 (76%), Gaps = 26/416 (6%)

Query: 66  SSQAQQPWPPGVDPTDHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASN 125
           ++ A +P PPGV      KR SEALY+PTLLG H +IGQ+EAWY+T+   KRP++ES S+
Sbjct: 111 AASAVEPLPPGV------KRTSEALYYPTLLGAHNTIGQTEAWYTTDYFTKRPKLESTSH 164

Query: 126 LPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERP 185
           LP+YPQR GEKDC +YMQTRTCKFGD+CKFDHPIWVPEGGIPDWKE PV+  +E  PERP
Sbjct: 165 LPIYPQRAGEKDCTHYMQTRTCKFGDSCKFDHPIWVPEGGIPDWKEAPVVP-NEEYPERP 223

Query: 186 GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGT 245
           GEPDCPY++KTQRCK+GS+CKFNHP+++   S ++ +    ALPERPSEP C FY+K G 
Sbjct: 224 GEPDCPYYIKTQRCKYGSRCKFNHPREEAAVSVETQD----ALPERPSEPMCTFYMKTGK 279

Query: 246 CKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNS 305
           CKFG TCKF HPKD Q+PS  Q+NG      SV  T E     NP ++     PA+ HNS
Sbjct: 280 CKFGLTCKFHHPKDIQVPSSSQDNG-----SSVGLTSEPDATNNPHVTF---TPALYHNS 331

Query: 306 KGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISV 365
           KGLP+RPGE+DCPFYLKTGSCKYG+TCRYNHPERTA  P A  I + L++S  A+L + +
Sbjct: 332 KGLPVRPGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQATGINYSLVSSNTANLNLGM 391

Query: 366 VSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRS 425
           V+PA S YQT    L Q TLG   + YPQRPGQ ECDYYMKTG CKFGE+C+FHHP DR 
Sbjct: 392 VTPATSFYQT----LTQPTLGALSATYPQRPGQSECDYYMKTGECKFGERCRFHHPADRL 447

Query: 426 AA---KTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMA 478
           +A   +   Q  VKL+LAG PRREGA++CPYYMKTGTCKYGATCKFDHPPPGEVMA
Sbjct: 448 SATSNQASQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPGEVMA 503

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331028|ref|NP_187874.2| zinc finger CCCH domain-containing protein 37 [Arabidopsis thaliana] gi|75249536|sp|Q941Q3.1|C3H37_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 37; Short=AtC3H37; AltName: Full=ENHANCER OF AG-4 protein 1 gi|16797661|gb|AAK01470.1| floral homeotic protein HUA1 [Arabidopsis thaliana] gi|332641710|gb|AEE75231.1| zinc finger CCCH domain-containing protein 37 [Arabidopsis thaliana]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 268/416 (64%), Positives = 319/416 (76%), Gaps = 26/416 (6%)

Query: 66  SSQAQQPWPPGVDPTDHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASN 125
           ++ A +P PPGV      KR SEALY+PTLLG H +IGQ+EAWY+T+   KRP++ES S+
Sbjct: 114 AASAVEPLPPGV------KRTSEALYYPTLLGAHNTIGQTEAWYTTDYFTKRPKLESTSH 167

Query: 126 LPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERP 185
           LP+YPQR GEKDC +YMQTRTCKFG++C+FDHPIWVPEGGIPDWKE PV+  +E  PERP
Sbjct: 168 LPIYPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVP-NEEYPERP 226

Query: 186 GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGT 245
           GEPDCPY++KTQRCK+GSKCKFNHP+++   S ++ +    +LPERPSEP C FY+K G 
Sbjct: 227 GEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQD----SLPERPSEPMCTFYMKTGK 282

Query: 246 CKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNS 305
           CKFG +CKF HPKD QLPS  Q+ G      SV  T E     NP ++     PA+ HNS
Sbjct: 283 CKFGLSCKFHHPKDIQLPSSSQDIG-----SSVGLTSEPDATNNPHVTF---TPALYHNS 334

Query: 306 KGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISV 365
           KGLP+R GE+DCPFYLKTGSCKYG+TCRYNHPERTA  P AA + + L++S  A+L + +
Sbjct: 335 KGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLGL 394

Query: 366 VSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRS 425
           V+PA S YQT    L Q TLGV  + YPQRPGQ ECDYYMKTG CKFGE+CKFHHP DR 
Sbjct: 395 VTPATSFYQT----LTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRL 450

Query: 426 AAKT---PSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMA 478
           +A T   P Q  VKL+LAG PRREGA++CPYYMKTGTCKYGATCKFDHPPPGEVMA
Sbjct: 451 SAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPGEVMA 506

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110738176|dbj|BAF01019.1| floral homeotic protein HUA1 [Arabidopsis thaliana]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 268/416 (64%), Positives = 319/416 (76%), Gaps = 26/416 (6%)

Query: 66  SSQAQQPWPPGVDPTDHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASN 125
           ++ A +P PPGV      KR SEALY+PTLLG H +IGQ+EAWY+T+   KRP++ES S+
Sbjct: 112 AASAVEPLPPGV------KRTSEALYYPTLLGAHNTIGQTEAWYTTDYFTKRPKLESTSH 165

Query: 126 LPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERP 185
           LP+YPQR GEKDC +YMQTRTCKFG++C+FDHPIWVPEGGIPDWKE PV+  +E  PERP
Sbjct: 166 LPIYPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVP-NEEYPERP 224

Query: 186 GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGT 245
           GEPDCPY++KTQRCK+GSKCKFNHP+++   S ++ +    +LPERPSEP C FY+K G 
Sbjct: 225 GEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQD----SLPERPSEPMCTFYMKTGK 280

Query: 246 CKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNS 305
           CKFG +CKF HPKD QLPS  Q+ G      SV  T E     NP ++     PA+ HNS
Sbjct: 281 CKFGLSCKFHHPKDIQLPSSSQDIG-----SSVGLTSEPDATNNPHVTF---TPALYHNS 332

Query: 306 KGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISV 365
           KGLP+R GE+DCPFYLKTGSCKYG+TCRYNHPERTA  P AA + + L++S  A+L + +
Sbjct: 333 KGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLGL 392

Query: 366 VSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRS 425
           V+PA S YQT    L Q TLGV  + YPQRPGQ ECDYYMKTG CKFGE+CKFHHP DR 
Sbjct: 393 VTPATSFYQT----LTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRL 448

Query: 426 AAKT---PSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMA 478
           +A T   P Q  VKL+LAG PRREGA++CPYYMKTGTCKYGATCKFDHPPPGEVMA
Sbjct: 449 SAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPGEVMA 504

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	508
TAIR|locus:2087775	524	HUA1 "ENHANCER OF AG-4 1" [Ara	0.767	0.744	0.644	7.6e-151
TAIR|locus:2075477	397	ZFN1 "zinc finger protein 1" [	0.255	0.327	0.439	1.1e-54
TAIR|locus:2171407	375	ZFN3 "zinc finger nuclease 3"	0.238	0.322	0.473	2.9e-54
TAIR|locus:2043368	468	AT2G47850 [Arabidopsis thalian	0.240	0.260	0.453	1.2e-50
TAIR|locus:2081066	462	AT3G06410 [Arabidopsis thalian	0.627	0.690	0.341	4.7e-48
TAIR|locus:2182988	465	AT5G18550 [Arabidopsis thalian	0.616	0.673	0.335	9.8e-48
TAIR|locus:2101170	448	AT3G48440 [Arabidopsis thalian	0.486	0.551	0.327	4.4e-27
TAIR|locus:2010562	404	AT1G04990 [Arabidopsis thalian	0.543	0.683	0.323	6.3e-37
TAIR|locus:1006230718	82	AT1G48195 [Arabidopsis thalian	0.157	0.975	0.452	7.4e-17
TAIR|locus:2013763	321	AT1G29570 [Arabidopsis thalian	0.098	0.155	0.44	1.3e-05

TAIR|locus:2087775 HUA1 "ENHANCER OF AG-4 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1472 (523.2 bits), Expect = 7.6e-151, P = 7.6e-151
 Identities = 268/416 (64%), Positives = 319/416 (76%)

Query:    66 SSQAQQPWPPGVDPTDHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLAKRPRIESASN 125
             ++ A +P PPGV      KR SEALY+PTLLG H +IGQ+EAWY+T+   KRP++ES S+
Sbjct:   114 AASAVEPLPPGV------KRTSEALYYPTLLGAHNTIGQTEAWYTTDYFTKRPKLESTSH 167

Query:   126 LPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERP 185
             LP+YPQR GEKDC +YMQTRTCKFG++C+FDHPIWVPEGGIPDWKE PV+ + E  PERP
Sbjct:   168 LPIYPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEE-YPERP 226

Query:   186 GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGT 245
             GEPDCPY++KTQRCK+GSKCKFNHP+++   S ++ +    +LPERPSEP C FY+K G 
Sbjct:   227 GEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQD----SLPERPSEPMCTFYMKTGK 282

Query:   246 CKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNS 305
             CKFG +CKF HPKD QLPS  Q+ G      SV  T E     NP ++     PA+ HNS
Sbjct:   283 CKFGLSCKFHHPKDIQLPSSSQDIG-----SSVGLTSEPDATNNPHVTF---TPALYHNS 334

Query:   306 KGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISV 365
             KGLP+R GE+DCPFYLKTGSCKYG+TCRYNHPERTA  P AA + + L++S  A+L + +
Sbjct:   335 KGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLGL 394

Query:   366 VSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRS 425
             V+PA S YQT    L Q TLGV  + YPQRPGQ ECDYYMKTG CKFGE+CKFHHP DR 
Sbjct:   395 VTPATSFYQT----LTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRL 450

Query:   426 AAKT---PSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMA 478
             +A T   P Q  VKL+LAG PRREGA++CPYYMKTGTCKYGATCKFDHPPPGEVMA
Sbjct:   451 SAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPGEVMA 506

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0003723 "RNA binding" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2075477 ZFN1 "zinc finger protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 65/148 (43%), Positives = 97/148 (65%)

Query:   129 YPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSE---SLPERP 185
             YP+RPGE DC+YY++T  C+FG TC+F+HP         D +E+ VIA++      PER 
Sbjct:    37 YPERPGEPDCSYYIRTGLCRFGSTCRFNHP--------RD-REL-VIATARMRGEYPERI 86

Query:   186 GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGT 245
             G+P+C Y+LKT  CKFG  CKF+HP++K  G +   + ++   P R +E  CA++L+ G 
Sbjct:    87 GQPECEYYLKTGTCKFGVTCKFHHPRNKA-GIAGRVSLNMLGYPLRSNEVDCAYFLRTGH 145

Query:   246 CKFGATCKFDHPK----DFQLPSVGQEN 269
             CKFG TCKF+HP+    +  +P+ GQ++
Sbjct:   146 CKFGGTCKFNHPQPQPTNMMVPTSGQQS 173

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0010313 "phytochrome binding" evidence=IPI

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0048027 "mRNA 5'-UTR binding" evidence=IPI

TAIR|locus:2171407 ZFN3 "zinc finger nuclease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
 Identities = 62/131 (47%), Positives = 86/131 (65%)

Query:   129 YPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSES-LPERPGE 187
             YP+R GE DCAYY++T  C+FG TC+F+HP         D K V   A  +   PER G+
Sbjct:    39 YPERHGEPDCAYYIRTGLCRFGSTCRFNHP--------HDRKLVIATARIKGEYPERIGQ 90

Query:   188 PDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCK 247
             P+C ++LKT  CKFG  CKF+HP++K  G   S + +V + P RP+E  C+++L+ G CK
Sbjct:    91 PECEFYLKTGTCKFGVTCKFHHPRNKA-GIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCK 149

Query:   248 FGATCKFDHPK 258
             FG TCKF+HP+
Sbjct:   150 FGGTCKFNHPQ 160

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

TAIR|locus:2043368 AT2G47850 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 1.2e-50, Sum P(2) = 1.2e-50
 Identities = 59/130 (45%), Positives = 80/130 (61%)

Query:   129 YPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEP 188
             YP+RPG  DCAYYM+T  C +G+ C+++HP       +    E  V A+ +  PER GEP
Sbjct:    42 YPERPGAPDCAYYMRTGVCGYGNRCRYNHPR--DRASV----EATVRATGQ-YPERFGEP 94

Query:   189 DCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKF 248
              C ++LKT  CKFG+ CKF+HPK+   GS      ++   P R  +  C++YLK G CKF
Sbjct:    95 PCQFYLKTGTCKFGASCKFHHPKNAG-GSMSHVPLNIYGYPVREGDNECSYYLKTGQCKF 153

Query:   249 GATCKFDHPK 258
             G TCKF HP+
Sbjct:   154 GITCKFHHPQ 163

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2081066 AT3G06410 [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 120/351 (34%), Positives = 181/351 (51%)

Query:   129 YPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEP 188
             YP+RP E DC YY++T  C +G  C+F+HP     G +       V   + +LPER G P
Sbjct:    51 YPERPDEPDCIYYLRTGVCGYGSRCRFNHPR--DRGAVIGG----VRGEAGALPERMGHP 104

Query:   189 DCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSAL--PERPSEPPCAFYLKNGTC 246
              C +F++T  CKFG+ CK++HP+    G S +    +S L  P RP E  C++YL+ G C
Sbjct:   105 VCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVS-LSYLGYPLRPGEKECSYYLRTGQC 163

Query:   247 KFGATCKFDHPKDFQL---PSVGQENGIGEQNE--SVIKTDETTGLLNPGM-SLFSHAPA 300
             KFG TC+F+HP    +   P   Q+     Q +  ++  T ++  + +     L    P+
Sbjct:   164 KFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQSQSIPSSQQYGLVLTRPS 223

Query:   301 MLHNSK-GLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAA 359
              L  S    P  P     P  L  G   Y     +N P + +++   +    P I S ++
Sbjct:   224 FLTGSYLQSPYGP-----PMVLPPGMVPYSG---WN-PYQASLSAMPSPGTQPSIGS-SS 273

Query:   360 SLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFH 419
               G++ +SP+A+ Y T   +   ++   S   +PQRP Q EC Y+M+TG CKFG  C++H
Sbjct:   274 IYGLTPLSPSATAY-TGTYQSVPSSNSTSKE-FPQRPDQPECQYFMRTGDCKFGSSCRYH 331

Query:   420 HPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDH 470
             HP+D    KT     + L+  GLP R G   C ++ + G CK+G  CKFDH
Sbjct:   332 HPVDAVPPKTG----IVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2182988 AT5G18550 [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 118/352 (33%), Positives = 178/352 (50%)

Query:   129 YPQRPGEKDCAYYMQTRTCKFGDTCKFDHPI-WVPE-GGIPDWKEVPVIASSESLPERPG 186
             +P+RP E DC YY++T  C +G  C+F+HP    P  GG+           +   PER G
Sbjct:    48 FPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLR--------TEAGEFPERMG 99

Query:   187 EPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNG---DVSALPERPSEPPCAFYLKN 243
             +P C +F++T  CKFG+ CK++HP+    G  DS      +    P RP E  C+++++ 
Sbjct:   100 QPVCQHFMRTGTCKFGASCKYHHPRQG--GGGDSVTPVSLNYMGFPLRPGEKECSYFMRT 157

Query:   244 GTCKFGATCKFDHP--KDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAM 301
             G CKFG+TC++ HP     Q PS  Q+  +             T   +    +    P +
Sbjct:   158 GQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPSLQSQTVPSSQQYGVVLARPQL 217

Query:   302 LHNSK-GLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAAS 360
             L  S    P   G++  P     G   Y     +N P + +++   +    P + + +  
Sbjct:   218 LPGSYVQSPYGYGQMVLP----PGMVPYSG---WN-PYQASVSAMPSPGTQPSMGTSSV- 268

Query:   361 LGISVVSPAASLYQTIDPRLAQATLGVS--PSLYPQRPGQMECDYYMKTGVCKFGEKCKF 418
              GI+ +SP+A  YQ+       ++ GVS     +PQRP Q EC Y+M+TG CKFG  C+F
Sbjct:   269 YGITPLSPSAPAYQS-----GPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRF 323

Query:   419 HHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDH 470
             HHP++   A +P   T  L+  GLP R GAV C ++ + G CK+G  CKFDH
Sbjct:   324 HHPME---AASPEAST--LSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDH 370

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2101170 AT3G48440 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 4.4e-27, P = 4.4e-27
 Identities = 94/287 (32%), Positives = 137/287 (47%)

Query:   216 GSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHP--KDFQLPSVGQENGIGE 273
             G   S N   +  P RP    C+FY++ G+CKFG++CKF+HP  + FQ   + ++N + E
Sbjct:    95 GDGWSENESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQ---IARDNKVRE 151

Query:   274 QNES-----VI--KTDETTGLLNPGMSL-FSH-------APAMLHNSKGLPIRPGELDCP 318
             + +      +I  K    TG    G +  F+H       A A   N  GLP+RPGE++CP
Sbjct:   152 KEDDGGKLGLIDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECP 211

Query:   319 FYLKTGSCKYGSTCRYNHPERTAI-----------NPPAAAIVHPLITSPAASLGISVVS 367
             +Y++ GSCKYG+ C++NHP+ T I           N  +     P  T  A+S   S   
Sbjct:   212 YYMRNGSCKYGAECKFNHPDPTTIGGTDSPSFRGNNGVSIGTFSPKATFQASSTSWSSPR 271

Query:   368 PAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAA 427
                     I   L+Q T GV+ S  P+  G     Y  + GV  F     +   ++ S+A
Sbjct:   272 HVNGTSPFIPVMLSQ-THGVT-SQNPEWNGYQASVYSSERGV--FSPSTTYL--MNNSSA 325

Query:   428 KTP---SQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHP 471
             +T    SQ   ++     P R     C YYMKTG CK+   CK+ HP
Sbjct:   326 ETSMLLSQYRHQMPAEEFPERPDQPECSYYMKTGDCKFKFNCKYHHP 372

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2010562 AT1G04990 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 100/309 (32%), Positives = 145/309 (46%)

Query:   129 YPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEP 188
             YP RPGE+DC +Y++T  C +G +C+++HP  +P+          V    E LPER G+P
Sbjct:    44 YPDRPGERDCQFYLRTGLCGYGSSCRYNHPTHLPQD---------VAYYKEELPERIGQP 94

Query:   189 DCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKF 248
             DC YFLKT  CK+G  CK++HPKD+    +     +V  LP R  E PC +YL+ GTC+F
Sbjct:    95 DCEYFLKTGACKYGPTCKYHHPKDR--NGAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRF 152

Query:   249 GATCKFDHPKDFQLPSVGQENGIGEQN--------ESVIKTDETTGLLNPGMSLFSHAPA 300
             G  CKF HP+    P  G     G  +         S +    T G L       S+ P 
Sbjct:   153 GVACKFHHPQ----PDNGHSTAYGMSSFPAADLRYASGLTMMSTYGTLPRPQVPQSYVPI 208

Query:   301 MLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITS---P 357
             ++  S+G    P +   P Y+   +  Y    +  +   +A    A A+   L  S   P
Sbjct:   209 LVSPSQGF--LPPQGWAP-YMAASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQP 265

Query:   358 AASLGISVVSPAAS---LYQTIDPRLAQATLG-VSPSLYPQRPGQMECDYYMKTGVCKFG 413
                  ++  +        Y     R++Q     ++P + P RPGQ  C  +   G CKFG
Sbjct:   266 ECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFG 325

Query:   414 EKCKFHHPI 422
               CKF HP+
Sbjct:   326 PNCKFDHPM 334

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:1006230718 AT1G48195 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 7.4e-17, P = 7.4e-17
 Identities = 38/84 (45%), Positives = 51/84 (60%)

Query:   387 VSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRRE 446
             +S   +P+RPG+ EC YY++TG C   + CK+HHP +     TPS+    L   GLP R 
Sbjct:     1 MSEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNI----TPSEPQCTLNDKGLPLRP 56

Query:   447 GAVHCPYYMKTGTCKYGATCKFDH 470
             G   CP+Y + G C+ G TCKFDH
Sbjct:    57 GQAICPHYSRFGICRSGPTCKFDH 80

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2013763 AT1G29570 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query:   302 LHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVH 351
             +  S   P+RPG+ DC FYLK G C+Y S+CR+NHP +     P     H
Sbjct:    46 MRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKH 95

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q941Q3	C3H37_ARATH	No assigned EC number	0.6442	0.7677	0.7442	yes	no
Q5ZDJ6	C3H8_ORYSJ	No assigned EC number	0.5298	0.7618	0.8376	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	508
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	2e-07
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	4e-07
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	2e-06
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	2e-06
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	3e-06
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	7e-06
smart00356	27	smart00356, ZnF_C3H1, zinc finger	6e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	8e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.001
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.001
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.001

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 451 CPYYMKTGTCKYGATCKFDHPP 472
           C ++ +TGTCKYG  CKF H  
Sbjct: 6   CRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 400 ECDYYMKTGVCKFGEKCKFHHP 421
            C ++ +TG CK+G++CKF H 
Sbjct: 5   LCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 185 PGEPDCPYFLKTQRCKFGSKCKFNHPK 211
                C +F +T  CK+G +CKF H +
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 232 PSEPPCAFYLKNGTCKFGATCKFDHPK 258
                C F+ + GTCK+G  CKF H +
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 312 PGELDCPFYLKTGSCKYGSTCRYNHPE 338
                C F+ +TG+CKYG  C++ H +
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 133 PGEKDCAYYMQTRTCKFGDTCKFDHP 158
              + C ++ +T TCK+GD CKF H 
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 184 RPGEPDCPYFLKTQRCKFGSKCKFNHPK 211
           +     C +F K   C  G +CKF HP 
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 395 RPGQMECDYYMKTGVCKFGEKCKFHHP 421
           +     C ++ K G C  G++CKF HP
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)

Query: 451 CPYYMKTGTCKYGATCKFDHPP 472
           C ++ K G C  G  CKF HP 
Sbjct: 7   CKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 311 RPGELDCPFYLKTGSCKYGSTCRYNHPE 338
           +     C F+ K G C  G  C++ HP 
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 231 RPSEPPCAFYLKNGTCKFGATCKFDHPK 258
           +     C F+ K G C  G  CKF HP 
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	508
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.71
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.53
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	99.49
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.47
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	99.45
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.4
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	99.23
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	99.1
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.99
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.84
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.76
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	98.73
KOG4791	667	consensus Uncharacterized conserved protein [Funct	98.6
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	98.51
KOG4791	667	consensus Uncharacterized conserved protein [Funct	98.19
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.1
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.06
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.02
KOG1763	343	consensus Uncharacterized conserved protein, conta	97.83
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	97.68
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	97.58
smart00356	27	ZnF_C3H1 zinc finger.	97.53
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	97.51
smart00356	27	ZnF_C3H1 zinc finger.	97.44
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.37
KOG1763	343	consensus Uncharacterized conserved protein, conta	97.01
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	96.32
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.25
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	96.05
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.66
KOG2333	614	consensus Uncharacterized conserved protein [Gener	95.53
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.33
KOG2185	486	consensus Predicted RNA-processing protein, contai	95.16
COG5152	259	Uncharacterized conserved protein, contains RING a	94.03
COG5152	259	Uncharacterized conserved protein, contains RING a	91.16
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	90.99
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	90.05
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	87.98
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	86.1
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	82.84
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	82.52

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.71  E-value=2.5e-16  Score=162.78  Aligned_cols=128  Identities=31%  Similarity=0.669  Sum_probs=100.6

Q ss_pred             CCCCCCCCCCCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCC-CC
Q 040937          125 NLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKF-GS  203 (508)
Q Consensus       125 ~~~~~p~r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~-G~  203 (508)
                      ....|+.++....|.+|.+++.|.++..|+|.|+......      ++.........+++.++++|++|.++|.|++ |+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~------~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge  149 (332)
T KOG1677|consen   76 GSSPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRP------RPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGE  149 (332)
T ss_pred             ccCcCCCCCCccccccccccCCCCCCCCCCccCccccccc------CCccccccccCcccccCCcceeeecCccccccCc
Confidence            3455888888899999999999999999999998622111      0000124567788999999999999999999 99


Q ss_pred             CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCC
Q 040937          204 KCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQ  261 (508)
Q Consensus       204 ~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~  261 (508)
                      +|+|.|...+.....   ..+....+.+.++++|.+|+++|.|+||..|+|.|+....
T Consensus       150 ~crfah~~~e~r~~~---~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~  204 (332)
T KOG1677|consen  150 QCRFAHGLEELRLPS---SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPED  204 (332)
T ss_pred             hhhhcCCcccccccc---cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccc
Confidence            999999987762110   1234556677899999999999999999999999998754

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.53  E-value=1.5e-14  Score=149.51  Aligned_cols=125  Identities=38%  Similarity=0.796  Sum_probs=97.4

Q ss_pred             CCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcCCCCCcccCCCcccCCccccCccccCCCcccccccCccccccccC
Q 040937          307 GLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLG  386 (508)
Q Consensus       307 ~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~~~p~~~~~~~p~~~s~~~~~~~~~~~P~~~~~~~~~p~~s~~~~g  386 (508)
                      .+|.+++...|.+|..++.|.++..|+|.|+..........           .                           
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~-----------~---------------------------  120 (332)
T KOG1677|consen   79 PYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVR-----------R---------------------------  120 (332)
T ss_pred             cCCCCCCccccccccccCCCCCCCCCCccCcccccccCCcc-----------c---------------------------
Confidence            46777777899999999999999999999997322210000           0                           


Q ss_pred             CCCCCCCCCCCCcCchhhhcCCCCCC-CCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCC
Q 040937          387 VSPSLYPQRPGQMECDYYMKTGVCKF-GEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGAT  465 (508)
Q Consensus       387 ~~p~~~p~r~k~~~C~~y~~~G~C~~-G~~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~  465 (508)
                      ......+++.++++|++|.+.|.|+| |++|+|+|+..+++...      .+...+.+.++++++|.+|.++|.|+||.+
T Consensus       121 ~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~------~~~~~~~~~~~kt~lC~~f~~tG~C~yG~r  194 (332)
T KOG1677|consen  121 SRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS------SENQVGNPPKYKTKLCPKFQKTGLCKYGSR  194 (332)
T ss_pred             cccccCcccccCCcceeeecCccccccCchhhhcCCcccccccc------cchhhcCCCCCCCcCCCccccCCCCCCCCc
Confidence            01123356788999999999999999 99999999998877321      123456888999999999999999999999


Q ss_pred             CCCCCCCCCc
Q 040937          466 CKFDHPPPGE  475 (508)
Q Consensus       466 C~f~H~~p~~  475 (508)
                      |+|.|+.+..
T Consensus       195 C~F~H~~~~~  204 (332)
T KOG1677|consen  195 CRFIHGEPED  204 (332)
T ss_pred             CeecCCCccc
Confidence            9999997644

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=99.49  E-value=8e-15  Score=140.71  Aligned_cols=130  Identities=28%  Similarity=0.640  Sum_probs=106.5

Q ss_pred             cccCCCCCCCcccccCCCCCCCCCCCCCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCC
Q 040937          108 WYSTNSLAKRPRIESASNLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGE  187 (508)
Q Consensus       108 ~~~~~~~~kr~r~e~~s~~~~~p~r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~  187 (508)
                      |.+...+.|++|+-++     +...|....|+||...|.|.+|..|+|+|...                         ..
T Consensus       184 wnnksyllkkkrflke-----vgnspsavycryynangicgkgaacrfvhept-------------------------rk  233 (377)
T KOG1492|consen  184 WNNKSYLLKKKRFLKE-----VGNSPSAVYCRYYNANGICGKGAACRFVHEPT-------------------------RK  233 (377)
T ss_pred             EcChhHHHHHHHHHHH-----hCCCCceeEEEEecCCCcccCCceeeeecccc-------------------------cc
Confidence            4444557888888776     34556778999999999999999999999531                         12


Q ss_pred             CCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCCC
Q 040937          188 PDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQ  267 (508)
Q Consensus       188 ~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~~  267 (508)
                      .+|..|++ |+|.+.+.|.++|..+..                  ..+.|+||+- |.|. ..+|+|.|..-..      
T Consensus       234 ticpkfln-grcnkaedcnlsheldpr------------------ripacryfll-gkcn-npncryvhihyse------  286 (377)
T KOG1492|consen  234 TICPKFLN-GRCNKAEDCNLSHELDPR------------------RIPACRYFLL-GKCN-NPNCRYVHIHYSE------  286 (377)
T ss_pred             ccChHHhc-CccCchhcCCcccccCcc------------------ccchhhhhhh-ccCC-CCCceEEEEeecC------
Confidence            58999999 999999999999987643                  3578999997 9998 8999999976321      


Q ss_pred             CCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 040937          268 ENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPER  339 (508)
Q Consensus       268 ~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~  339 (508)
                                                                   ..++|.-|.|.|+|..|..|+-.|...
T Consensus       287 ---------------------------------------------napicfefakygfcelgtscknqhilq  313 (377)
T KOG1492|consen  287 ---------------------------------------------NAPICFEFAKYGFCELGTSCKNQHILQ  313 (377)
T ss_pred             ---------------------------------------------CCceeeeehhcceeccccccccceeee
Confidence                                                         236899999999999999999999643

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.47  E-value=6.8e-14  Score=143.50  Aligned_cols=143  Identities=27%  Similarity=0.628  Sum_probs=112.0

Q ss_pred             CCCCcCccccccC-CCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCC
Q 040937          132 RPGEKDCAYYMQT-RTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHP  210 (508)
Q Consensus       132 r~~~~~C~~f~~t-G~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~  210 (508)
                      +.+...|.++.+. -.|.+|..|.+.|....                     ...++.+|++|++ |.|++||.|.|+|+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~vcK~~l~-glC~kgD~C~Flhe   99 (325)
T KOG1040|consen   42 ESGRATCEFNESREKPCERGPICPKSHNDVS---------------------DSRGKVVCKHWLR-GLCKKGDQCEFLHE   99 (325)
T ss_pred             ccccchhcccccCCCCccCCCCCccccCCcc---------------------ccCCceeehhhhh-hhhhccCcCcchhh
Confidence            3445688887632 46888899999996421                     1225679999999 99999999999998


Q ss_pred             CCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccccccccccccCcCCC
Q 040937          211 KDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNP  290 (508)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~~~~~~~~q~~s~~~~~~~~g~~~~  290 (508)
                      .+..                  ..+.|.||..+|.|.++.+|.|.|.....                             
T Consensus       100 ~~~~------------------k~rec~ff~~~g~c~~~~~c~y~h~dpqt-----------------------------  132 (325)
T KOG1040|consen  100 YDLT------------------KMRECKFFSLFGECTNGKDCPYLHGDPQT-----------------------------  132 (325)
T ss_pred             hhhc------------------ccccccccccccccccccCCcccCCChhh-----------------------------
Confidence            7322                  45789999999999999999999977410                             


Q ss_pred             CCcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcCCCCCcccCCCcccCCccccCccccCCCc
Q 040937          291 GMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAA  370 (508)
Q Consensus       291 ~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~~~p~~~~~~~p~~~s~~~~~~~~~~~P~~  370 (508)
                                            ..++|.+|.+ |+|+-|+.|++.|...                               
T Consensus       133 ----------------------~~k~c~~~~~-g~c~~g~~c~~~h~~~-------------------------------  158 (325)
T KOG1040|consen  133 ----------------------AIKKCKWYKE-GFCRGGPSCKKRHERK-------------------------------  158 (325)
T ss_pred             ----------------------hhhccchhhh-ccCCCcchhhhhhhcc-------------------------------
Confidence                                  2367999966 9999999999999643                               


Q ss_pred             ccccccCccccccccCCCCCCCCCCCCCcCchhhhcCCCCCCCCC-CCCCCCCCccc
Q 040937          371 SLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEK-CKFHHPIDRSA  426 (508)
Q Consensus       371 ~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~~G~C~~G~~-C~f~H~~~~~~  426 (508)
                                                  ++|..|. .|+|..|.+ |.+.|+...+.
T Consensus       159 ----------------------------~~c~~y~-~gfC~~g~q~c~~~hp~~~~~  186 (325)
T KOG1040|consen  159 ----------------------------VLCPPYN-AGFCPKGPQRCDMLHPEFQQP  186 (325)
T ss_pred             ----------------------------cCCCchh-hhhccCCCCcccccCCCCCCC
Confidence                                        3678888 599999988 99999877655

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=99.45  E-value=7.3e-14  Score=134.13  Aligned_cols=141  Identities=26%  Similarity=0.613  Sum_probs=113.9

Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCC
Q 040937          186 GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSV  265 (508)
Q Consensus       186 ~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~  265 (508)
                      ....|+||...|.|-+|..|+|.|.+...                    .+|.-|++ |.|....+|.+.|..+..    
T Consensus       205 savycryynangicgkgaacrfvheptrk--------------------ticpkfln-grcnkaedcnlsheldpr----  259 (377)
T KOG1492|consen  205 SAVYCRYYNANGICGKGAACRFVHEPTRK--------------------TICPKFLN-GRCNKAEDCNLSHELDPR----  259 (377)
T ss_pred             ceeEEEEecCCCcccCCceeeeecccccc--------------------ccChHHhc-CccCchhcCCcccccCcc----
Confidence            34579999999999999999999987543                    68999998 999999999999987521    


Q ss_pred             CCCCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcCCCC
Q 040937          266 GQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPP  345 (508)
Q Consensus       266 ~~~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~~~p~  345 (508)
                                                                     ..+.|+||+- |.|. ..+|||.|..-..    
T Consensus       260 -----------------------------------------------ripacryfll-gkcn-npncryvhihyse----  286 (377)
T KOG1492|consen  260 -----------------------------------------------RIPACRYFLL-GKCN-NPNCRYVHIHYSE----  286 (377)
T ss_pred             -----------------------------------------------ccchhhhhhh-ccCC-CCCceEEEEeecC----
Confidence                                                           2356999986 9996 6999999964311    


Q ss_pred             CcccCCCcccCCccccCccccCCCcccccccCccccccccCCCCCCCCCCCCCcCchhhhcCCCCCCCCCCCCCCCCCcc
Q 040937          346 AAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRS  425 (508)
Q Consensus       346 ~~~~~~p~~~s~~~~~~~~~~~P~~~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~  425 (508)
                                                                         ..++|-.|.+.|+|..|..|+-.|.+   
T Consensus       287 ---------------------------------------------------napicfefakygfcelgtscknqhil---  312 (377)
T KOG1492|consen  287 ---------------------------------------------------NAPICFEFAKYGFCELGTSCKNQHIL---  312 (377)
T ss_pred             ---------------------------------------------------CCceeeeehhcceeccccccccceee---
Confidence                                                               13589999999999999999999953   


Q ss_pred             ccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCCCCcccccccCC
Q 040937          426 AAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMAISALD  483 (508)
Q Consensus       426 ~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~p~~~~~~~~s~  483 (508)
                                              .|..|...|.|.. +.|-+.|-.....+.+.+.-
T Consensus       313 ------------------------qctdyamfgscnn-pqcslyhgavsadvpeqtea  345 (377)
T KOG1492|consen  313 ------------------------QCTDYAMFGSCNN-PQCSLYHGAVSADVPEQTEA  345 (377)
T ss_pred             ------------------------eecchhhhcCCCC-CcceeecceeccCCcccccC
Confidence                                    5888988899998 89999997654444444433

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.40  E-value=5.5e-13  Score=136.81  Aligned_cols=154  Identities=25%  Similarity=0.429  Sum_probs=117.3

Q ss_pred             CCCCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCC
Q 040937          132 RPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPK  211 (508)
Q Consensus       132 r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~  211 (508)
                      ..+..+|+||++ |.|++||.|.|+|....                       .+.+.|.||..+|.|..+..|.|.|..
T Consensus        74 ~~~~~vcK~~l~-glC~kgD~C~Flhe~~~-----------------------~k~rec~ff~~~g~c~~~~~c~y~h~d  129 (325)
T KOG1040|consen   74 SRGKVVCKHWLR-GLCKKGDQCEFLHEYDL-----------------------TKMRECKFFSLFGECTNGKDCPYLHGD  129 (325)
T ss_pred             cCCceeehhhhh-hhhhccCcCcchhhhhh-----------------------cccccccccccccccccccCCcccCCC
Confidence            355689999997 99999999999997531                       134589999999999999999999987


Q ss_pred             CcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccccccccccccCcCCCC
Q 040937          212 DKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPG  291 (508)
Q Consensus       212 ~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~~~~~~~~q~~s~~~~~~~~g~~~~~  291 (508)
                      .+.                  ....|.+|.. |.|..|+.|++.|...                                
T Consensus       130 pqt------------------~~k~c~~~~~-g~c~~g~~c~~~h~~~--------------------------------  158 (325)
T KOG1040|consen  130 PQT------------------AIKKCKWYKE-GFCRGGPSCKKRHERK--------------------------------  158 (325)
T ss_pred             hhh------------------hhhccchhhh-ccCCCcchhhhhhhcc--------------------------------
Confidence            432                  2468999988 9999999999999764                                


Q ss_pred             CcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCC-CCCCCCCCCcCCCCCcccCCCcccCCccccCccccCCCc
Q 040937          292 MSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGST-CRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAA  370 (508)
Q Consensus       292 ~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~-Crf~Hp~~~~~~p~~~~~~~p~~~s~~~~~~~~~~~P~~  370 (508)
                                             +.|..|+. |+|+.|.. |-+.|+.......                          
T Consensus       159 -----------------------~~c~~y~~-gfC~~g~q~c~~~hp~~~~~~~--------------------------  188 (325)
T KOG1040|consen  159 -----------------------VLCPPYNA-GFCPKGPQRCDMLHPEFQQPPF--------------------------  188 (325)
T ss_pred             -----------------------cCCCchhh-hhccCCCCcccccCCCCCCChh--------------------------
Confidence                                   35888976 99999998 9999997532100                          


Q ss_pred             ccccccCccccccccCCCCCCCCCCCCCcCchhhhcCCCCCCCCCCCCCCCCCcc
Q 040937          371 SLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRS  425 (508)
Q Consensus       371 ~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~  425 (508)
                                    .......-+++.++..+.++.. ..+.....|.+.+...+.
T Consensus       189 --------------~~~~~q~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~~  228 (325)
T KOG1040|consen  189 --------------HQGSVQHPPQRQSQQPGKISGE-EKIHKLLQDKQLPQQHEE  228 (325)
T ss_pred             --------------hccccCCCCCCCCcCccccccc-cccchhhhhhhhhHHHHH
Confidence                          0001122244566777888884 778888888888765543

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=99.23  E-value=1e-11  Score=125.47  Aligned_cols=211  Identities=27%  Similarity=0.463  Sum_probs=123.1

Q ss_pred             CCccccccCCCCCCCCC-CCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCC
Q 040937          188 PDCPYFLKTQRCKFGSK-CKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVG  266 (508)
Q Consensus       188 ~~C~~f~~tG~C~~G~~-C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~  266 (508)
                      ++||.|++ |.|++||. |+|.|+.....   ++.          -.-.-|.+|+| |.|. .++|+|.|+......   
T Consensus        38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~---V~~----------g~v~aC~Ds~k-grCs-R~nCkylHpp~hlkd---   98 (331)
T KOG2494|consen   38 EVCREFLR-NTCSRGDRECKFAHPPKNCQ---VSN----------GRVIACFDSQK-GRCS-RENCKYLHPPQHLKD---   98 (331)
T ss_pred             HHHHHHHh-ccccCCCccccccCCCCCCC---ccC----------CeEEEEecccc-CccC-cccceecCCChhhhh---
Confidence            58999999 99999999 99999976431   110          12346999999 9999 888999998752100   


Q ss_pred             CCCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCC--CCCCcccCCCC-CCCCCCCCCCCcCC
Q 040937          267 QENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCP--FYLKTGSCKYG-STCRYNHPERTAIN  343 (508)
Q Consensus       267 ~~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~--~y~ktG~Ck~G-~~Crf~Hp~~~~~~  343 (508)
                             |.       ..++.++..  .....-+.+.....   -+++++|.  .| .++-|.-| ..|+|.|.....  
T Consensus        99 -------ql-------~ingrn~l~--lq~~~aA~~~q~~~---~~g~Pi~~v~~f-~~~~~~~g~~~~s~~~y~~~~--  156 (331)
T KOG2494|consen   99 -------QL-------KINGRNNLI--LQKTAAAMLAQQMQ---GPGTPICSVPMF-ATGPCLGGNTACSYWPYLPPV--  156 (331)
T ss_pred             -------hh-------hhcccccHH--HHHHHHhhhccccc---CCCccccccccc-cccccccCCCccccccccCCC--
Confidence                   00       011111110  00000011111111   15778888  44 56778765 479999975421  


Q ss_pred             CCCcccCCCcccCCccccCccccCCCcccccccCccccccccCCCCCCCCCCCCCcCchhhhcCCCCCCC-CCCCCCCCC
Q 040937          344 PPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFG-EKCKFHHPI  422 (508)
Q Consensus       344 p~~~~~~~p~~~s~~~~~~~~~~~P~~~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~~G~C~~G-~~C~f~H~~  422 (508)
                      | .-.+             +....|..+.+-...|.+ ....++++..+....+.++|+. . .|.|.++ .+|.|+|+.
T Consensus       157 P-g~~v-------------p~~~~p~~~~~~~g~p~v-~~~~~~~~~k~~r~~~~e~~~~-~-~gn~~r~e~d~~f~~~~  219 (331)
T KOG2494|consen  157 P-GGLV-------------PADGLPTTPVFVPGGPGV-PGPGLVGGQKLLRSDRLEVCRE-Q-RGNCRRGEQDAQFAHPA  219 (331)
T ss_pred             C-CCCC-------------CCcCCCCCccccCCCCcc-cccccccccccccCCCCCCCcc-c-ccccccchhHHHHhhhh
Confidence            0 0000             001111111111111111 1123345566666778899999 3 5899888 789999998


Q ss_pred             CccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCC
Q 040937          423 DRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPP  472 (508)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~  472 (508)
                      +.+......+              ...+|..+.+ |.|.- ++|++.|..
T Consensus       220 k~~~~~s~~~--------------t~~~~~~~t~-~~~~~-en~~~~~~~  253 (331)
T KOG2494|consen  220 KSIMIDSNDN--------------TVEVCLRYTK-GRCET-ENCKYFHAP  253 (331)
T ss_pred             hhhhcccCCC--------------cchhcccccc-ceech-hcccccCch
Confidence            7766432211              2567888888 88887 788888864

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=99.10  E-value=1.6e-09  Score=109.26  Aligned_cols=198  Identities=25%  Similarity=0.496  Sum_probs=134.2

Q ss_pred             cCccccccCCCCCCCCCCCccCCCCCCCCCCCCC--------------------CcccccccCCCCCCCC-CCCCccccc
Q 040937          136 KDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDW--------------------KEVPVIASSESLPERP-GEPDCPYFL  194 (508)
Q Consensus       136 ~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~--------------------~~~~~~~~~~~~p~r~-~~~~C~~f~  194 (508)
                      .+|.+++ .|.|..+..|.+.|-......+-..|                    +....+....-.+.-+ .+..|.+++
T Consensus         3 ~~~~~~~-~g~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~qi~p~~s~~~f~n~~~l~~~~~~~~~~gn~~~~~~~~   81 (285)
T COG5084           3 NVCSFAI-DGKCNLGSGCTYNHSNYTSLNDGLQSVSSKYMGAKQISPSLSSPTFKNKANLMQNTNDNFVPGNTVACISRN   81 (285)
T ss_pred             chhhhhc-ccccccccccceeeeccccccccccchhhcccchhhcCccccccccccccccccccccccCcCccccccccc
Confidence            5899998 59999999999888643211100000                    0001111111111111 345699998


Q ss_pred             cCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCccc
Q 040937          195 KTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQ  274 (508)
Q Consensus       195 ~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~~~~~~~~q  274 (508)
                      ..+.+.....|++.|.....                 ...++|++|+. |.|+.+..|.|+|..+..-            
T Consensus        82 ~~~~~~~~~s~~~~~~~~~~-----------------~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~------------  131 (285)
T COG5084          82 FNSIRGSRLSTPNNHVNPVL-----------------SSSVVCKFFLR-GLCKSGFSCEFLHEYDLRS------------  131 (285)
T ss_pred             ccCCccccccCCccccCccc-----------------cCCcccchhcc-ccCcCCCccccccCCCccc------------
Confidence            86666555589999975432                 23578999998 9999999999999876420            


Q ss_pred             cccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcCCCCCcccCCCcc
Q 040937          275 NESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLI  354 (508)
Q Consensus       275 ~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~~~p~~~~~~~p~~  354 (508)
                                                           .-.+.|++|...|.|..|..|.|.|.+....            
T Consensus       132 -------------------------------------s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~------------  162 (285)
T COG5084         132 -------------------------------------SQGPPCRSFSLKGSCSSGPSCGYSHIDPDSF------------  162 (285)
T ss_pred             -------------------------------------ccCCCcccccccceeccCCCCCccccCcccc------------
Confidence                                                 0124699997779999999999999873210            


Q ss_pred             cCCccccCccccCCCcccccccCccccccccCCCCCCCCCCCCCcCchhhhc--CCCCCCCCCCCCCCCCCccccCCCch
Q 040937          355 TSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMK--TGVCKFGEKCKFHHPIDRSAAKTPSQ  432 (508)
Q Consensus       355 ~s~~~~~~~~~~~P~~~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~--~G~C~~G~~C~f~H~~~~~~~~~~~~  432 (508)
                                                                 ...|.+|..  .+.|+.|..|++.|......      
T Consensus       163 -------------------------------------------~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~~------  193 (285)
T COG5084         163 -------------------------------------------AGNCDQYSGATYGFCPLGASCKFSHTLKRVS------  193 (285)
T ss_pred             -------------------------------------------cccccccCcccccccCCCCcccccccccccc------
Confidence                                                       124666663  59999999999999865322      


Q ss_pred             hhhhhcccCCCCCCCCCCcccccCccccCCCCC--------------CCCCCCCCCcc
Q 040937          433 ETVKLTLAGLPRREGAVHCPYYMKTGTCKYGAT--------------CKFDHPPPGEV  476 (508)
Q Consensus       433 ~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~--------------C~f~H~~p~~~  476 (508)
                                   .....|..|.. +.|+-|..              |.+.||.-...
T Consensus       194 -------------~~~~p~~~y~~-~fsP~g~~~~~~~~~~~~~~~~~~~~~ps~~~~  237 (285)
T COG5084         194 -------------YGSSPCGNYTP-PFSPPGTPSESVSSWGYGKGTSCSLSHPSLNID  237 (285)
T ss_pred             -------------ccccccccCcC-CcCCCCCCccccccccccccccccCCCccccCC
Confidence                         11338999998 99999999              99999875443

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.99  E-value=2.1e-09  Score=107.57  Aligned_cols=215  Identities=16%  Similarity=0.240  Sum_probs=130.8

Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCC-
Q 040937          186 GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPS-  264 (508)
Q Consensus       186 ~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~-  264 (508)
                      ++++|+.-...+.|++++.|.|+|.....         ....++.+.++..|..|++-+.|.++.+|-|.|-....+.. 
T Consensus       114 kt~~l~ss~~~~~~~~p~~n~fahs~~is---------sl~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q  184 (351)
T COG5063         114 KTEMLRSSTEIPYCRYPDKNPFAHSKAIS---------SLAQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQ  184 (351)
T ss_pred             cchhhhccccccccccCCCCcCCCccccc---------cccccCccccccceeEEecCCccccccccccccccccccCcc
Confidence            56777765444789999999999986543         11223344567789999999999999999999977654321 


Q ss_pred             --CCCCCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCC-CCCCCCCCCcccCCC---CCCCCCC---
Q 040937          265 --VGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPG-ELDCPFYLKTGSCKY---GSTCRYN---  335 (508)
Q Consensus       265 --~~~~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg-~~~C~~y~ktG~Ck~---G~~Crf~---  335 (508)
                        .+..+....+..+..  .+......|..+.....  +..|   .+.+-+ --+|.-|...|.|++   |+.|.|.   
T Consensus       185 ~l~~rkpks~~~~~s~t--~~kes~a~P~~~~~~~~--~e~n---~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~  257 (351)
T COG5063         185 PLSQRKPKSGKNCTSYT--LGKESDAHPHDELIYQK--QEQN---KPLYKTNPELCESFTRKGTCPYWISGVKCQFACRG  257 (351)
T ss_pred             hhhccCcccCcCccccc--cccccccCchhhhhhhh--hhcc---chhhcCCHHHhhccCcCCCCccccccccccccccc
Confidence              111111111111100  00111111111110000  0001   111111 136999998899999   9999999   


Q ss_pred             CCCCCcCCCCCcccCCCcccCCccccCccccCCCcccccccCccccccccCCCCCCCCCCCCCcCchhhhcCCCCCCCCC
Q 040937          336 HPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEK  415 (508)
Q Consensus       336 Hp~~~~~~p~~~~~~~p~~~s~~~~~~~~~~~P~~~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~~G~C~~G~~  415 (508)
                      |+-.. ..+                                             ..--+..+++.|..|.+.|.|++|..
T Consensus       258 HGlN~-l~~---------------------------------------------k~k~~~frTePcinwe~sGyc~yg~R  291 (351)
T COG5063         258 HGLNE-LKS---------------------------------------------KKKKQNFRTEPCINWEKSGYCPYGLR  291 (351)
T ss_pred             ccccc-ccc---------------------------------------------cccccccccCCccchhhcccCccccc
Confidence            87331 100                                             00012245789999999999999999


Q ss_pred             CCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCC
Q 040937          416 CKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPP  472 (508)
Q Consensus       416 C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~  472 (508)
                      |.|.|.-+.....      ......    ......|+-++.+|.|++|.+|.|.|.+
T Consensus       292 c~F~hgd~~~ie~------~~~~~~----~y~~~~crt~~~~g~~p~g~~~c~~~dk  338 (351)
T COG5063         292 CCFKHGDDSDIEM------YEEASL----GYLDGPCRTRAKGGAFPSGGAVCKSFDK  338 (351)
T ss_pred             cccccCChhhccc------cccccc----cccccccccccccCccCCCCchhhcccc
Confidence            9999987654310      000001    1235789999999999999999999976

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.84  E-value=5.1e-08  Score=98.55  Aligned_cols=116  Identities=24%  Similarity=0.471  Sum_probs=89.2

Q ss_pred             CCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCc
Q 040937          134 GEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDK  213 (508)
Q Consensus       134 ~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~  213 (508)
                      .+..|.+++.-+.+.....|.+.|...+                      -...++|++|+. |.|+.+..|.|+|..+.
T Consensus        73 n~~~~~~~~~~~~~~~~~s~~~~~~~~~----------------------~~s~V~c~~~~~-g~c~s~~~c~~lh~~d~  129 (285)
T COG5084          73 NTVACISRNFNSIRGSRLSTPNNHVNPV----------------------LSSSVVCKFFLR-GLCKSGFSCEFLHEYDL  129 (285)
T ss_pred             cccccccccccCCccccccCCccccCcc----------------------ccCCcccchhcc-ccCcCCCccccccCCCc
Confidence            3457999987677777678999985311                      012368999999 99999999999999765


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccccccccccccCcCCCCCc
Q 040937          214 LIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMS  293 (508)
Q Consensus       214 ~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~~~~~~~~q~~s~~~~~~~~g~~~~~~~  293 (508)
                      .                ++-.+.|++|...|.|..|..|.+.|.++..                                
T Consensus       130 ~----------------~s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~--------------------------------  161 (285)
T COG5084         130 R----------------SSQGPPCRSFSLKGSCSSGPSCGYSHIDPDS--------------------------------  161 (285)
T ss_pred             c----------------cccCCCcccccccceeccCCCCCccccCccc--------------------------------
Confidence            4                1125789999555999999999999987421                                


Q ss_pred             ccccCcccccCCCCCCCCCCCCCCCCCCC--cccCCCCCCCCCCCCCC
Q 040937          294 LFSHAPAMLHNSKGLPIRPGELDCPFYLK--TGSCKYGSTCRYNHPER  339 (508)
Q Consensus       294 ~~~~~Pa~~~~s~~~P~rpg~~~C~~y~k--tG~Ck~G~~Crf~Hp~~  339 (508)
                                         ....|.+|..  +|+|++|..|++.|...
T Consensus       162 -------------------~~~~~~~~~~~~~~f~p~g~~c~~~H~~~  190 (285)
T COG5084         162 -------------------FAGNCDQYSGATYGFCPLGASCKFSHTLK  190 (285)
T ss_pred             -------------------ccccccccCcccccccCCCCccccccccc
Confidence                               1235777764  69999999999999875

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.76  E-value=1e-07  Score=95.64  Aligned_cols=240  Identities=19%  Similarity=0.283  Sum_probs=143.7

Q ss_pred             cccccccCcCCCcchhhcccccccccccc--CCCCCC-CCCCC--CCCCCCCcccccccccCccccCCCCcccccCCCCC
Q 040937           41 HLSESTLRYDPDHSIYDSFRYSGYLSSQA--QQPWPP-GVDPT--DHLKRPSEALYHPTLLGTHTSIGQSEAWYSTNSLA  115 (508)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~--~~~~r~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~  115 (508)
                      |+|-++.+=..+++|=+++|..-.|++-+  -.+|++ +..+.  .|+--+ +.++-.++++ ..+.+.. ..|.-    
T Consensus        65 ~~s~s~dn~~~ss~e~~q~~~~ssass~SP~~~pw~~~~~~a~~p~g~~kt-~~l~ss~~~~-~~~~p~~-n~fah----  137 (351)
T COG5063          65 HLSASLDNKEQSSSEKRQKAEDSSASSNSPQNYPWSPRGSNANKPYGLYKT-EMLRSSTEIP-YCRYPDK-NPFAH----  137 (351)
T ss_pred             cccccccccccccccccccccccchhccCCcCCCCCCCCCCccCccccccc-hhhhcccccc-ccccCCC-CcCCC----
Confidence            56666667778888989999876666555  567776 33332  332211 1222333444 2222222 11111    


Q ss_pred             CCcccccCCCCCCCCCCCCCcCccccccCCCCCCCCCCCccCCCCCCCCCC------CCC----CcccccccCCC-----
Q 040937          116 KRPRIESASNLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGI------PDW----KEVPVIASSES-----  180 (508)
Q Consensus       116 kr~r~e~~s~~~~~p~r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~------~~~----~~~~~~~~~~~-----  180 (508)
                        +.  .++....-+.|.+++-|..|+--+.|+++.+|-|.|-.-+..+-.      ++.    ..+++......     
T Consensus       138 --s~--~issl~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~l~~rkpks~~~~~s~t~~kes~a~P~~~  213 (351)
T COG5063         138 --SK--AISSLAQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQPLSQRKPKSGKNCTSYTLGKESDAHPHDE  213 (351)
T ss_pred             --cc--ccccccccCccccccceeEEecCCccccccccccccccccccCcchhhccCcccCcCccccccccccccCchhh
Confidence              11  222344456667778898888789999999999988532111100      000    00111100000     


Q ss_pred             --------CCCCCCC--CCccccccCCCCCC---CCCCCCC---CCCCcccCCCCCCCCCCCCCCCCCCCcccccccccC
Q 040937          181 --------LPERPGE--PDCPYFLKTQRCKF---GSKCKFN---HPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNG  244 (508)
Q Consensus       181 --------~p~r~~~--~~C~~f~~tG~C~~---G~~C~f~---H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG  244 (508)
                              ...-+++  .+|.-|-..|.|++   |+.|.|.   |...++...         ..-...++.+|..|.+.|
T Consensus       214 ~~~~~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k---------~k~~~frTePcinwe~sG  284 (351)
T COG5063         214 LIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSK---------KKKQNFRTEPCINWEKSG  284 (351)
T ss_pred             hhhhhhhccchhhcCCHHHhhccCcCCCCcccccccccccccccccccccccc---------ccccccccCCccchhhcc
Confidence                    0011133  68999999999999   9999999   987665111         111223567899999999


Q ss_pred             CCCCCCCCcCCCCCCCCCCCCCCCCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcc
Q 040937          245 TCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTG  324 (508)
Q Consensus       245 ~C~~G~~C~F~H~~~~~~~~~~~~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG  324 (508)
                      .|.+|..|.|.|..+..+.....+                                    +.+|    ....|+-+++.|
T Consensus       285 yc~yg~Rc~F~hgd~~~ie~~~~~------------------------------------~~~y----~~~~crt~~~~g  324 (351)
T COG5063         285 YCPYGLRCCFKHGDDSDIEMYEEA------------------------------------SLGY----LDGPCRTRAKGG  324 (351)
T ss_pred             cCccccccccccCChhhccccccc------------------------------------cccc----cccccccccccC
Confidence            999999999999987654331100                                    0000    123599999999


Q ss_pred             cCCCCCCCCCCCCCCC
Q 040937          325 SCKYGSTCRYNHPERT  340 (508)
Q Consensus       325 ~Ck~G~~Crf~Hp~~~  340 (508)
                      .|+.|-+|.+.|.+..
T Consensus       325 ~~p~g~~~c~~~dkkn  340 (351)
T COG5063         325 AFPSGGAVCKSFDKKN  340 (351)
T ss_pred             ccCCCCchhhccccch
Confidence            9999999999998763

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=1e-08  Score=106.41  Aligned_cols=226  Identities=17%  Similarity=0.304  Sum_probs=122.9

Q ss_pred             cccccccccCCCCCCCCCcCCCCCCC-CCCCCCCCCCCccccccccccccccCcCCCCCccc-----ccC--cccccCCC
Q 040937          235 PPCAFYLKNGTCKFGATCKFDHPKDF-QLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLF-----SHA--PAMLHNSK  306 (508)
Q Consensus       235 ~~C~~f~ktG~C~~G~~C~F~H~~~~-~~~~~~~~~~~~~q~~s~~~~~~~~g~~~~~~~~~-----~~~--Pa~~~~s~  306 (508)
                      .+|+||++ |.|++|+.|+|.|..+. .......+-.+......+  ......+.++.++..     ...  +.....+.
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~s~   85 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAASTG--LSQSLIWANAVADASATMSVSSRPVLTAIRASS   85 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCchhhccccccccccccccccc--cchhhcccchhhccccccchhcccchhhhhhhh
Confidence            79999999 99999999999999873 111100000000000000  000000111100000     000  00111111


Q ss_pred             CCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcCCCCCcccCCCcccCCcccc-CccccCCCcccccccCcccccccc
Q 040937          307 GLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASL-GISVVSPAASLYQTIDPRLAQATL  385 (508)
Q Consensus       307 ~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~~~p~~~~~~~p~~~s~~~~~-~~~~~~P~~~~~~~~~p~~s~~~~  385 (508)
                      ..-.--..++|.+ ++.|.|.+|..|.+.|.....+  ......+|+...+..+. ..+.     ....         ..
T Consensus        86 ~~~~~s~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~--c~l~~~~pi~~~~~~~~~~~~~-----~~~~---------~~  148 (344)
T KOG1039|consen   86 SISEPSSTQENPY-SNHGQCRFGNGDVTLNGNNPES--CGLGTQHPICKRQYKNSMKRGS-----SCAL---------SS  148 (344)
T ss_pred             ccccccccccCcc-ccccccccCCcccccccccccc--cccccccchhHHHHhhhhcccc-----cccc---------hH
Confidence            1111123467875 4569999999999999754332  12233444443322221 0000     0000         01


Q ss_pred             CCCCCCCCCCCCCcCchhhhcCCCCCC------C--CCCCCCCCCCccccCCC--c------------------------
Q 040937          386 GVSPSLYPQRPGQMECDYYMKTGVCKF------G--EKCKFHHPIDRSAAKTP--S------------------------  431 (508)
Q Consensus       386 g~~p~~~p~r~k~~~C~~y~~~G~C~~------G--~~C~f~H~~~~~~~~~~--~------------------------  431 (508)
                      .+.-.+.+++.+.++|.+.|....++.      |  ++|.+.+.+..++.+..  +                        
T Consensus       149 ~~e~~~a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~  228 (344)
T KOG1039|consen  149 AMERSFALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSF  228 (344)
T ss_pred             hhhhccCcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccce
Confidence            112245566788899999998777665      4  78999988888874320  0                        


Q ss_pred             ----hhhhhhcccCCCCCCCCCCcccccC-ccccCCCCCCCCCCCCCCcccccc
Q 040937          432 ----QETVKLTLAGLPRREGAVHCPYYMK-TGTCKYGATCKFDHPPPGEVMAIS  480 (508)
Q Consensus       432 ----~~~~~~~~~~~p~~~~~~~C~~y~~-~G~C~fG~~C~f~H~~p~~~~~~~  480 (508)
                          .++...++..+...++.+.|.||.+ .|.|+||..|.|.|-.|.+.....
T Consensus       229 Wv~t~~~k~~li~e~~~~~s~~~c~yf~~~~g~cPf~s~~~y~h~~~~~~~~~~  282 (344)
T KOG1039|consen  229 WVETKEEKQKLIEEYEAEMSAKDCKYFSQGLGSCPFGSKCFYKHLLPSGASTDP  282 (344)
T ss_pred             eeeecccccccHHHHHHHhhccchhhhcCCCCCCCCCCcccccccccccccccc
Confidence                0122234444555678899999986 579999999999999998875544

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=2.1e-08  Score=105.41  Aligned_cols=136  Identities=23%  Similarity=0.402  Sum_probs=86.0

Q ss_pred             cCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCccc
Q 040937          136 KDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKLI  215 (508)
Q Consensus       136 ~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~  215 (508)
                      .+|.||+. ..|++++.|.|.|...-                      +....+|++|+..-.|+.  .|+|.|..-.. 
T Consensus         4 ~dcyff~y-s~cKk~d~c~~rh~E~a----------------------l~n~t~C~~w~~~~~C~k--~C~YRHSe~~~-   57 (667)
T KOG4791|consen    4 EDCYFFFY-STCKKGDSCPFRHCEAA----------------------LGNETVCTLWQEGRCCRK--VCRYRHSEIDK-   57 (667)
T ss_pred             ccchhhhh-hhhhccCcCcchhhHHH----------------------hcCcchhhhhhhcCcccc--cccchhhHHhh-
Confidence            58999985 89999999999996421                      012258999999545654  99999986443 


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccccccCC-CCCCCCCcCCCCCCC--C-CCCCCCCCCCccccccccccccccCcCCCC
Q 040937          216 GSSDSGNGDVSALPERPSEPPCAFYLKNGT-CKFGATCKFDHPKDF--Q-LPSVGQENGIGEQNESVIKTDETTGLLNPG  291 (508)
Q Consensus       216 ~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~-C~~G~~C~F~H~~~~--~-~~~~~~~~~~~~q~~s~~~~~~~~g~~~~~  291 (508)
                                     -.....|.||++ +. |. .++|-|.|..+.  . ++..+-++.-.++..      .++      
T Consensus        58 ---------------kr~e~~CYwe~~-p~gC~-k~~CgfRH~~pPLkg~l~~~p~~pe~ev~~~------~~S------  108 (667)
T KOG4791|consen   58 ---------------KRSEIPCYWENQ-PTGCQ-KLNCGFRHNRPPLKGVLPTVPESPEEEVKAS------QLS------  108 (667)
T ss_pred             ---------------hcCcccceeecC-CCccC-CCccccccCCCchhhhccCCCCCcccccccc------ccc------
Confidence                           014578999998 76 99 899999995521  1 111000000001100      000      


Q ss_pred             CcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q 040937          292 MSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERT  340 (508)
Q Consensus       292 ~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~  340 (508)
                              |+...-..     .-..|-||+| +.|..+|.|-|.|+.++
T Consensus       109 --------Aq~~sV~~-----~p~P~l~~~K-~~e~~~D~~s~Lh~P~A  143 (667)
T KOG4791|consen  109 --------AQQNSVQS-----NPSPQLRSVK-KVESSEDVPSPLHPPVA  143 (667)
T ss_pred             --------CCCccccc-----CCchHHHHhh-hhhhhccccccCCCCcc
Confidence                    00000000     1135889988 99999999999998754

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=98.51  E-value=1.5e-07  Score=95.69  Aligned_cols=102  Identities=26%  Similarity=0.517  Sum_probs=67.6

Q ss_pred             cCccccccCCCCCCCCC-CCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 040937          136 KDCAYYMQTRTCKFGDT-CKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL  214 (508)
Q Consensus       136 ~~C~~f~~tG~C~~G~~-CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~  214 (508)
                      ++||-|++ |.|++||. |||+|+.....     +.+             -+...|..|++ |+|.+ ++|+|+|...++
T Consensus        38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~-----V~~-------------g~v~aC~Ds~k-grCsR-~nCkylHpp~hl   96 (331)
T KOG2494|consen   38 EVCREFLR-NTCSRGDRECKFAHPPKNCQ-----VSN-------------GRVIACFDSQK-GRCSR-ENCKYLHPPQHL   96 (331)
T ss_pred             HHHHHHHh-ccccCCCccccccCCCCCCC-----ccC-------------CeEEEEecccc-CccCc-ccceecCCChhh
Confidence            79999998 99999998 99999864321     111             12246999999 99975 789999998765


Q ss_pred             cCCC---CCCC--------CCCCCCCCCCCCcccc--cccccCCCCCC-CCCcCCCCCC
Q 040937          215 IGSS---DSGN--------GDVSALPERPSEPPCA--FYLKNGTCKFG-ATCKFDHPKD  259 (508)
Q Consensus       215 ~~~~---~~~~--------~~~~~~P~r~~~~~C~--~f~ktG~C~~G-~~C~F~H~~~  259 (508)
                      ...-   ....        .-.......+.+++|.  .|.- +.|.-| ..|+|.|...
T Consensus        97 kdql~ingrn~l~lq~~~aA~~~q~~~~~g~Pi~~v~~f~~-~~~~~g~~~~s~~~y~~  154 (331)
T KOG2494|consen   97 KDQLKINGRNNLILQKTAAAMLAQQMQGPGTPICSVPMFAT-GPCLGGNTACSYWPYLP  154 (331)
T ss_pred             hhhhhhcccccHHHHHHHHhhhcccccCCCccccccccccc-cccccCCCccccccccC
Confidence            2110   0000        0000112225678888  6664 788866 4699998765

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=9.3e-07  Score=93.26  Aligned_cols=141  Identities=20%  Similarity=0.357  Sum_probs=86.6

Q ss_pred             CCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCCCCCCCCC
Q 040937          188 PDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQ  267 (508)
Q Consensus       188 ~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~~~~~~~~  267 (508)
                      +.|.+|+. -.|++++.|.|.|...-.                 .....|.+|+. +.|- .+.|+|.|..-...     
T Consensus         4 ~dcyff~y-s~cKk~d~c~~rh~E~al-----------------~n~t~C~~w~~-~~~C-~k~C~YRHSe~~~k-----   58 (667)
T KOG4791|consen    4 EDCYFFFY-STCKKGDSCPFRHCEAAL-----------------GNETVCTLWQE-GRCC-RKVCRYRHSEIDKK-----   58 (667)
T ss_pred             ccchhhhh-hhhhccCcCcchhhHHHh-----------------cCcchhhhhhh-cCcc-cccccchhhHHhhh-----
Confidence            57999988 789999999999987544                 23578999998 5544 34999999763210     


Q ss_pred             CCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcCCCCCc
Q 040937          268 ENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAA  347 (508)
Q Consensus       268 ~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~~~p~~~  347 (508)
                                                                  ..+-+|.|+.+..-|. .++|-|.|.....-   .+
T Consensus        59 --------------------------------------------r~e~~CYwe~~p~gC~-k~~CgfRH~~pPLk---g~   90 (667)
T KOG4791|consen   59 --------------------------------------------RSEIPCYWENQPTGCQ-KLNCGFRHNRPPLK---GV   90 (667)
T ss_pred             --------------------------------------------cCcccceeecCCCccC-CCccccccCCCchh---hh
Confidence                                                        0234799999833496 59999999542110   11


Q ss_pred             ccCCCcccCCccccCccccCCCcccccccCccccccccCCCCCCCCCCCCCcCchhhhcCCCCCCCCCCCCCCCCCcc
Q 040937          348 AIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRS  425 (508)
Q Consensus       348 ~~~~p~~~s~~~~~~~~~~~P~~~~~~~~~p~~s~~~~g~~p~~~p~r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~  425 (508)
                      +.+.|..+.  ..    +..+     +...+..   .+         ..-...|-+|.+ ++|..++.|-|.|+....
T Consensus        91 l~~~p~~pe--~e----v~~~-----~~SAq~~---sV---------~~~p~P~l~~~K-~~e~~~D~~s~Lh~P~A~  144 (667)
T KOG4791|consen   91 LPTVPESPE--EE----VKAS-----QLSAQQN---SV---------QSNPSPQLRSVK-KVESSEDVPSPLHPPVAI  144 (667)
T ss_pred             ccCCCCCcc--cc----cccc-----cccCCCc---cc---------ccCCchHHHHhh-hhhhhccccccCCCCccc
Confidence            111111100  00    0000     0000000   00         111247999996 999999999999988443

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.10  E-value=5.3e-07  Score=59.76  Aligned_cols=25  Identities=40%  Similarity=1.105  Sum_probs=20.6

Q ss_pred             CCCCcccccCccccCCCCCCCCCCC
Q 040937          447 GAVHCPYYMKTGTCKYGATCKFDHP  471 (508)
Q Consensus       447 ~~~~C~~y~~~G~C~fG~~C~f~H~  471 (508)
                      ++.+|++|+++|.|+||++|+|.|+
T Consensus         2 k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    2 KTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             ccccChhhccCCccCCCCCcCccCC
Confidence            5789999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.06  E-value=1e-06  Score=58.43  Aligned_cols=25  Identities=48%  Similarity=1.112  Sum_probs=20.3

Q ss_pred             CCcCccccccCCCCCCCCCCCccCC
Q 040937          134 GEKDCAYYMQTRTCKFGDTCKFDHP  158 (508)
Q Consensus       134 ~~~~C~~f~~tG~C~~G~~CkF~H~  158 (508)
                      ++++|++|+++|.|++|++|+|+|+
T Consensus         2 k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    2 KTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             ccccChhhccCCccCCCCCcCccCC
Confidence            4679999999999999999999996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.02  E-value=2e-05  Score=85.05  Aligned_cols=58  Identities=29%  Similarity=0.628  Sum_probs=48.0

Q ss_pred             CcCchhhhcCCCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCCCC
Q 040937          398 QMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPG  474 (508)
Q Consensus       398 ~~~C~~y~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~p~  474 (508)
                      -..|..|.+ |.|+.||.|.|+|...+.-          +    .|.++++..|+.-   |.|+. .-|+|+|.+.+
T Consensus       236 ~tpCPefrk-G~C~rGD~CEyaHgvfEcw----------L----HPa~YRT~~CkDg---~~C~R-rvCfFAH~~eq  293 (528)
T KOG1595|consen  236 STPCPEFRK-GSCERGDSCEYAHGVFECW----------L----HPARYRTRKCKDG---GYCPR-RVCFFAHSPEQ  293 (528)
T ss_pred             CccCccccc-CCCCCCCccccccceehhh----------c----CHHHhccccccCC---CCCcc-ceEeeecChHH
Confidence            468999996 9999999999999976533          1    4567779999987   88999 89999997543

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=97.83  E-value=3.7e-06  Score=84.26  Aligned_cols=83  Identities=28%  Similarity=0.687  Sum_probs=59.8

Q ss_pred             CCCCcCchhhhcCCCCCCCCCCCCCCCCCccccCCC---------c------hhhhhhcccCCCCCCCCCCcccccC---
Q 040937          395 RPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTP---------S------QETVKLTLAGLPRREGAVHCPYYMK---  456 (508)
Q Consensus       395 r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~~~~~~---------~------~~~~~~~~~~~p~~~~~~~C~~y~~---  456 (508)
                      +++..+|-+|. .|.|..|+.|+|+|++...+...-         +      ...+++.--+-|.-....+|.||+.   
T Consensus        89 DPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE  167 (343)
T KOG1763|consen   89 DPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVE  167 (343)
T ss_pred             CchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHh
Confidence            57889999999 599999999999999876653211         0      1123333334444445678999964   


Q ss_pred             ---cc---ccCCCC-CCCCCCCCCCcccc
Q 040937          457 ---TG---TCKYGA-TCKFDHPPPGEVMA  478 (508)
Q Consensus       457 ---~G---~C~fG~-~C~f~H~~p~~~~~  478 (508)
                         +|   .|++|. .|.|.|-+|.+.+.
T Consensus       168 ~~kYGWfW~CPnGg~~C~YrHaLP~GyVL  196 (343)
T KOG1763|consen  168 NGKYGWFWECPNGGDKCIYRHALPEGYVL  196 (343)
T ss_pred             cCCccceeECCCCCCeeeeeecCCcchhh
Confidence               45   899975 89999999988644

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=97.68  E-value=3.5e-05  Score=83.18  Aligned_cols=83  Identities=25%  Similarity=0.448  Sum_probs=62.8

Q ss_pred             CCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCC--CCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCC
Q 040937          146 TCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERP--GEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNG  223 (508)
Q Consensus       146 ~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~--~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~  223 (508)
                      .|.-+..|.|+|+-.+               .+...|.|+  .-+.|.-|-+ |.|++||.|.|.|..-+.         
T Consensus       208 ~shDwteCPf~HpgEk---------------ARRRDPRkyhYs~tpCPefrk-G~C~rGD~CEyaHgvfEc---------  262 (528)
T KOG1595|consen  208 RSHDWTECPFAHPGEK---------------ARRRDPRKYHYSSTPCPEFRK-GSCERGDSCEYAHGVFEC---------  262 (528)
T ss_pred             cCCCcccCCccCCCcc---------------cccCCcccccccCccCccccc-CCCCCCCccccccceehh---------
Confidence            4556689999996432               122234433  3468999998 999999999999987654         


Q ss_pred             CCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937          224 DVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD  259 (508)
Q Consensus       224 ~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~  259 (508)
                        ---|+++++..|++=   |.|++ .-|-|+|...
T Consensus       263 --wLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~e  292 (528)
T KOG1595|consen  263 --WLHPARYRTRKCKDG---GYCPR-RVCFFAHSPE  292 (528)
T ss_pred             --hcCHHHhccccccCC---CCCcc-ceEeeecChH
Confidence              234778888999997   78996 9999999875

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=97.58  E-value=1.5e-05  Score=77.82  Aligned_cols=93  Identities=23%  Similarity=0.431  Sum_probs=63.4

Q ss_pred             CCCCCcCchhhhcCCCCCCCCCCCCCCCCCccccCCC----chhhhhhcccC---CCCCCCCCCcccccC------cc--
Q 040937          394 QRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTP----SQETVKLTLAG---LPRREGAVHCPYYMK------TG--  458 (508)
Q Consensus       394 ~r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~~~~~~----~~~~~~~~~~~---~p~~~~~~~C~~y~~------~G--  458 (508)
                      ..++.++|-.|. .+.|..|+.|+|+|.....+...-    ++.........   .|.-....+|.||+.      +|  
T Consensus        81 vdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~  159 (299)
T COG5252          81 VDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWG  159 (299)
T ss_pred             cCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccce
Confidence            457899999999 699999999999999776663221    11111111122   233234578999964      33  


Q ss_pred             -ccCCC-CCCCCCCCCCCcccccccCCCCCc
Q 040937          459 -TCKYG-ATCKFDHPPPGEVMAISALDGTST  487 (508)
Q Consensus       459 -~C~fG-~~C~f~H~~p~~~~~~~~s~~~s~  487 (508)
                       .|++| ++|.|.|.+|.+.+-....+.-++
T Consensus       160 W~CPng~~~C~y~H~Lp~GyVLsrdk~Kd~t  190 (299)
T COG5252         160 WTCPNGNMRCSYIHKLPDGYVLSRDKIKDST  190 (299)
T ss_pred             eeCCCCCceeeeeeccCccceeccccccccc
Confidence             89997 799999999998766555544443

>smart00356 ZnF_C3H1 zinc finger

Probab=97.53  E-value=6.4e-05  Score=49.06  Aligned_cols=25  Identities=44%  Similarity=1.092  Sum_probs=21.8

Q ss_pred             CCCCcccccCccccCCCCCCCCCCCC
Q 040937          447 GAVHCPYYMKTGTCKYGATCKFDHPP  472 (508)
Q Consensus       447 ~~~~C~~y~~~G~C~fG~~C~f~H~~  472 (508)
                      ++.+|++| ++|.|++|++|+|.|..
T Consensus         3 k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        3 KTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            46789999 55999999999999973

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=97.51  E-value=0.00094  Score=73.75  Aligned_cols=22  Identities=32%  Similarity=0.810  Sum_probs=18.1

Q ss_pred             cccccccccCCCCCCCCCcCCCCCCC
Q 040937          235 PPCAFYLKNGTCKFGATCKFDHPKDF  260 (508)
Q Consensus       235 ~~C~~f~ktG~C~~G~~C~F~H~~~~  260 (508)
                      ..|++|..   |. ++.|.|.|+...
T Consensus       545 ~~Cky~~~---Ct-~a~Ce~~HPtaa  566 (681)
T KOG3702|consen  545 TRCKYGPA---CT-SAECEFAHPTAA  566 (681)
T ss_pred             ccccCCCc---CC-chhhhhcCCcch
Confidence            57999987   88 899999997753

>smart00356 ZnF_C3H1 zinc finger

Probab=97.44  E-value=0.0001  Score=48.14  Aligned_cols=25  Identities=36%  Similarity=0.983  Sum_probs=21.5

Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCC
Q 040937          186 GEPDCPYFLKTQRCKFGSKCKFNHPK  211 (508)
Q Consensus       186 ~~~~C~~f~~tG~C~~G~~C~f~H~~  211 (508)
                      ++.+|++|.+ |.|.+|++|+|+|+.
T Consensus         3 k~~~C~~~~~-g~C~~g~~C~~~H~~   27 (27)
T smart00356        3 KTELCKFFKR-GYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCcCcCccC-CCCCCCCCcCCCCcC
Confidence            4568999955 999999999999973

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.37  E-value=6.6e-05  Score=80.15  Aligned_cols=60  Identities=28%  Similarity=0.695  Sum_probs=49.0

Q ss_pred             CCcCchhhhcC--CCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCC
Q 040937          397 GQMECDYYMKT--GVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDH  470 (508)
Q Consensus       397 k~~~C~~y~~~--G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H  470 (508)
                      ...+|+-....  ..|.||++|+|.|+.+...+....+.              ...|+.|...|.|+||-+|||.-
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Di--------------g~~Cp~f~s~G~Cp~G~~CRFl~  136 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDI--------------GPSCPVFESLGFCPYGFKCRFLG  136 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCccc--------------CCccceeeccccCCccceeehhh
Confidence            35689998875  47999999999999987765443332              46799999999999999999974

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=97.01  E-value=0.00013  Score=73.43  Aligned_cols=78  Identities=26%  Similarity=0.540  Sum_probs=50.4

Q ss_pred             CCCCCCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCC----CCCC--------------CCCCCCCCCcccccccc-
Q 040937          182 PERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSG----NGDV--------------SALPERPSEPPCAFYLK-  242 (508)
Q Consensus       182 p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~----~~~~--------------~~~P~r~~~~~C~~f~k-  242 (508)
                      ...+++.+|.+|.. |.|..|+.|+|+|+...........    ..+.              .+.|......+|+||+- 
T Consensus        87 gvDPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeA  165 (343)
T KOG1763|consen   87 GVDPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEA  165 (343)
T ss_pred             CCCchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHH
Confidence            34557789999998 9999999999999986542111000    0000              01111123458999984 


Q ss_pred             -----cC---CCCCCC-CCcCCCCCCC
Q 040937          243 -----NG---TCKFGA-TCKFDHPKDF  260 (508)
Q Consensus       243 -----tG---~C~~G~-~C~F~H~~~~  260 (508)
                           .|   .|++|- .|.|.|-.+.
T Consensus       166 vE~~kYGWfW~CPnGg~~C~YrHaLP~  192 (343)
T KOG1763|consen  166 VENGKYGWFWECPNGGDKCIYRHALPE  192 (343)
T ss_pred             HhcCCccceeECCCCCCeeeeeecCCc
Confidence                 22   599875 8999998763

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=96.32  E-value=0.015  Score=64.47  Aligned_cols=21  Identities=33%  Similarity=0.846  Sum_probs=16.6

Q ss_pred             CcCccccccCCCCCCCCCCCccCCC
Q 040937          135 EKDCAYYMQTRTCKFGDTCKFDHPI  159 (508)
Q Consensus       135 ~~~C~~f~~tG~C~~G~~CkF~H~~  159 (508)
                      ...|.||..   |. +..|.|.|+.
T Consensus       544 l~~Cky~~~---Ct-~a~Ce~~HPt  564 (681)
T KOG3702|consen  544 LTRCKYGPA---CT-SAECEFAHPT  564 (681)
T ss_pred             eccccCCCc---CC-chhhhhcCCc
Confidence            368888874   88 7889999975

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.25  E-value=0.002  Score=67.68  Aligned_cols=32  Identities=31%  Similarity=0.896  Sum_probs=26.7

Q ss_pred             CCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q 040937          308 LPIRPGELDCPFYLKTGSCKYGSTCRYNHPERT  340 (508)
Q Consensus       308 ~P~rpg~~~C~~y~ktG~Ck~G~~Crf~Hp~~~  340 (508)
                      +|......+|+||+. |.|+|+++|||.|+...
T Consensus       134 ~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~V  165 (486)
T KOG2185|consen  134 TPTHESMKPCKFFLE-GRCRFGENCRFSHGLDV  165 (486)
T ss_pred             cCcchhhccchHhhc-cccccCcccccccCccc
Confidence            344456788999998 99999999999998754

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=96.05  E-value=0.0013  Score=64.52  Aligned_cols=77  Identities=26%  Similarity=0.563  Sum_probs=50.9

Q ss_pred             CCCCCCCccccccCCCCCCCCCCCCCCCCCcccCCCCC----------CCCCCCCCCCCCCCcccccccc---cC-----
Q 040937          183 ERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDS----------GNGDVSALPERPSEPPCAFYLK---NG-----  244 (508)
Q Consensus       183 ~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~----------~~~~~~~~P~r~~~~~C~~f~k---tG-----  244 (508)
                      ..+++.+|..|+. +.|..|+.|+|+|+..+.......          ++.....-|-.....+|+||+-   +|     
T Consensus        81 vdpK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~  159 (299)
T COG5252          81 VDPKTVVCALFLN-KTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWG  159 (299)
T ss_pred             cCchhHHHHHhcc-CccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccce
Confidence            3457889999998 999999999999997654221110          0111111121124568999974   23     


Q ss_pred             -CCCCC-CCCcCCCCCCC
Q 040937          245 -TCKFG-ATCKFDHPKDF  260 (508)
Q Consensus       245 -~C~~G-~~C~F~H~~~~  260 (508)
                       .|++| ..|.|.|..+.
T Consensus       160 W~CPng~~~C~y~H~Lp~  177 (299)
T COG5252         160 WTCPNGNMRCSYIHKLPD  177 (299)
T ss_pred             eeCCCCCceeeeeeccCc
Confidence             49998 57999998764

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.66  E-value=0.0084  Score=36.52  Aligned_cols=19  Identities=37%  Similarity=1.046  Sum_probs=16.6

Q ss_pred             CCCCCCCcccCCCCCCCCCCCC
Q 040937          316 DCPFYLKTGSCKYGSTCRYNHP  337 (508)
Q Consensus       316 ~C~~y~ktG~Ck~G~~Crf~Hp  337 (508)
                      .|+|+..   |+++++|.|.||
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            4898864   999999999996

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=95.53  E-value=0.0059  Score=65.69  Aligned_cols=61  Identities=25%  Similarity=0.755  Sum_probs=45.7

Q ss_pred             CCCccccccC--CCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCC
Q 040937          187 EPDCPYFLKT--QRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPK  258 (508)
Q Consensus       187 ~~~C~~f~~t--G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~  258 (508)
                      ..+|.-....  ..|++|++|+|.|+...-.+....         +  -.+.|.+|...|.|.+|-.|+|+-..
T Consensus        76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~---------D--ig~~Cp~f~s~G~Cp~G~~CRFl~aH  138 (614)
T KOG2333|consen   76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAP---------D--IGPSCPVFESLGFCPYGFKCRFLGAH  138 (614)
T ss_pred             hccChHhhcCCCccCcccccccccccHHHHHhccCc---------c--cCCccceeeccccCCccceeehhhcc
Confidence            3589988885  369999999999997644121111         0  13679999999999999999997544

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.33  E-value=0.012  Score=35.93  Aligned_cols=19  Identities=37%  Similarity=1.022  Sum_probs=16.9

Q ss_pred             CcccccCccccCCCCCCCCCCC
Q 040937          450 HCPYYMKTGTCKYGATCKFDHP  471 (508)
Q Consensus       450 ~C~~y~~~G~C~fG~~C~f~H~  471 (508)
                      +|+|+..   |++|++|.|.||
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            4888866   999999999997

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=95.16  E-value=0.009  Score=62.85  Aligned_cols=34  Identities=32%  Similarity=0.968  Sum_probs=27.8

Q ss_pred             CCCCCCCCcCccccccCCCCCCCCCCCccCCCCCC
Q 040937          128 VYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVP  162 (508)
Q Consensus       128 ~~p~r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~  162 (508)
                      .+|.-..-++|+||+. |.|+|+++|+|.|...++
T Consensus       133 l~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~V~  166 (486)
T KOG2185|consen  133 LTPTHESMKPCKFFLE-GRCRFGENCRFSHGLDVP  166 (486)
T ss_pred             ecCcchhhccchHhhc-cccccCcccccccCcccc
Confidence            3555556689999995 999999999999997653

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.03  E-value=0.023  Score=54.72  Aligned_cols=25  Identities=40%  Similarity=0.789  Sum_probs=23.0

Q ss_pred             cCccccccCCCCCCCCCCCccCCCC
Q 040937          136 KDCAYYMQTRTCKFGDTCKFDHPIW  160 (508)
Q Consensus       136 ~~C~~f~~tG~C~~G~~CkF~H~~~  160 (508)
                      .+|+.|-.||.|.+||.|+|+|...
T Consensus       142 dVCKdyk~TGYCGYGDsCKflH~R~  166 (259)
T COG5152         142 DVCKDYKETGYCGYGDSCKFLHDRS  166 (259)
T ss_pred             ccccchhhcccccCCchhhhhhhhh
Confidence            6899999999999999999999753

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=91.16  E-value=0.075  Score=51.27  Aligned_cols=26  Identities=31%  Similarity=0.754  Sum_probs=24.0

Q ss_pred             CCccccccCCCCCCCCCCCCCCCCCc
Q 040937          188 PDCPYFLKTQRCKFGSKCKFNHPKDK  213 (508)
Q Consensus       188 ~~C~~f~~tG~C~~G~~C~f~H~~~~  213 (508)
                      .+|+.|-.||.|-+||.|+|+|...+
T Consensus       142 dVCKdyk~TGYCGYGDsCKflH~R~D  167 (259)
T COG5152         142 DVCKDYKETGYCGYGDSCKFLHDRSD  167 (259)
T ss_pred             ccccchhhcccccCCchhhhhhhhhh
Confidence            58999999999999999999999764

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.99  E-value=0.097  Score=55.01  Aligned_cols=25  Identities=44%  Similarity=1.157  Sum_probs=23.9

Q ss_pred             CCcccccCccccCCCCCCCCCCCCCC
Q 040937          449 VHCPYYMKTGTCKYGATCKFDHPPPG  474 (508)
Q Consensus       449 ~~C~~y~~~G~C~fG~~C~f~H~~p~  474 (508)
                      ++|+||.+ |.|+||..|+|.|.+|.
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCch
Confidence            79999999 99999999999999995

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=90.05  E-value=0.07  Score=53.39  Aligned_cols=29  Identities=34%  Similarity=0.870  Sum_probs=24.9

Q ss_pred             CCCCCCCCCCcccCCCCCCCCCCCCCCCc
Q 040937          313 GELDCPFYLKTGSCKYGSTCRYNHPERTA  341 (508)
Q Consensus       313 g~~~C~~y~ktG~Ck~G~~Crf~Hp~~~~  341 (508)
                      .+.-|+||.|+|.|++|+.|-=.|..++.
T Consensus        14 dKv~c~fy~k~gacR~gdrcsR~h~kpt~   42 (260)
T KOG2202|consen   14 DKVNCSFYFKIGACRHGDRCSRLHEKPTF   42 (260)
T ss_pred             cccccchHHhhcccccccHHHHhhccccc
Confidence            34679999999999999999999987653

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=87.98  E-value=0.28  Score=49.24  Aligned_cols=28  Identities=25%  Similarity=0.740  Sum_probs=23.7

Q ss_pred             CCCCcCccccccCCCCCCCCCCCccCCC
Q 040937          132 RPGEKDCAYYMQTRTCKFGDTCKFDHPI  159 (508)
Q Consensus       132 r~~~~~C~~f~~tG~C~~G~~CkF~H~~  159 (508)
                      ...+.-|.||+++|.|..|+.|.=+|..
T Consensus        12 ekdKv~c~fy~k~gacR~gdrcsR~h~k   39 (260)
T KOG2202|consen   12 EKDKVNCSFYFKIGACRHGDRCSRLHEK   39 (260)
T ss_pred             cccccccchHHhhcccccccHHHHhhcc
Confidence            3455789999999999999999877863

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.10  E-value=0.23  Score=50.72  Aligned_cols=24  Identities=42%  Similarity=0.855  Sum_probs=22.7

Q ss_pred             cCccccccCCCCCCCCCCCccCCC
Q 040937          136 KDCAYYMQTRTCKFGDTCKFDHPI  159 (508)
Q Consensus       136 ~~C~~f~~tG~C~~G~~CkF~H~~  159 (508)
                      -+|+-|-.||.|.||++|+|+|+.
T Consensus       187 DicKdykeTgycg~gdSckFlh~r  210 (313)
T KOG1813|consen  187 DICKDYKETGYCGYGDSCKFLHDR  210 (313)
T ss_pred             hhhhhhHhhCcccccchhhhhhhh
Confidence            689999999999999999999985

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=82.84  E-value=0.83  Score=29.30  Aligned_cols=22  Identities=41%  Similarity=0.887  Sum_probs=18.2

Q ss_pred             CCccccccCCCCCCCCCCCCCCC
Q 040937          188 PDCPYFLKTQRCKFGSKCKFNHP  210 (508)
Q Consensus       188 ~~C~~f~~tG~C~~G~~C~f~H~  210 (508)
                      ++|.|-++.|.| ..+.|.|.|-
T Consensus         1 ~lC~yEl~Gg~C-nd~~C~~QHf   22 (23)
T PF10650_consen    1 PLCPYELTGGVC-NDPDCEFQHF   22 (23)
T ss_pred             CCCccccCCCee-CCCCCCcccc
Confidence            379999995599 5789999994

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.52  E-value=0.38  Score=49.18  Aligned_cols=28  Identities=39%  Similarity=0.762  Sum_probs=24.9

Q ss_pred             CCCcccccCccccCCCCCCCCCCCCCCc
Q 040937          448 AVHCPYYMKTGTCKYGATCKFDHPPPGE  475 (508)
Q Consensus       448 ~~~C~~y~~~G~C~fG~~C~f~H~~p~~  475 (508)
                      .-+|..|..||+|-||+.|+|.|..-+.
T Consensus       186 pDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  186 PDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             chhhhhhHhhCcccccchhhhhhhhhhc
Confidence            4579999999999999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	508
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-14
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	6e-14
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	4e-11
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-09
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	6e-09
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-04
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	3e-04
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	3e-08
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	1e-06
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	2e-04
2rhk_C	72	Cleavage and polyadenylation specificity factor su	6e-07
2rhk_C	72	Cleavage and polyadenylation specificity factor su	3e-06
2rhk_C	72	Cleavage and polyadenylation specificity factor su	1e-04
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	6e-06
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	8e-05
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	2e-04
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	2e-04

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 67.3 bits (164), Expect = 2e-14
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 12/72 (16%)

Query: 401 CDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTC 460
           C  Y ++G C++G KC+F H +              L  A    +     C  +   G C
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLGE------------LRQANRHPKYKTELCHKFKLQGRC 62

Query: 461 KYGATCKFDHPP 472
            YG+ C F H P
Sbjct: 63  PYGSRCHFIHNP 74

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 66.1 bits (161), Expect = 6e-14
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 190 CPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFG 249
           C  + ++ RC++G+KC+F H   +L  ++            +     C  +   G C +G
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLGELRQANR---------HPKYKTELCHKFKLQGRCPYG 65

Query: 250 ATCKFDHPKD 259
           + C F H   
Sbjct: 66  SRCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 58.0 bits (140), Expect = 4e-11
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 14/75 (18%)

Query: 138 CAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQ 197
           C  Y ++  C++G  C+F H                      +   +     C  F    
Sbjct: 15  CRTYSESGRCRYGAKCQFAHG--------------LGELRQANRHPKYKTELCHKFKLQG 60

Query: 198 RCKFGSKCKFNHPKD 212
           RC +GS+C F H   
Sbjct: 61  RCPYGSRCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 46/107 (42%)

Query: 317 CPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTI 376
           C  Y ++G C+YG+ C++ H                                        
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLGELRQAN------------------------------- 43

Query: 377 DPRLAQATLGVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPID 423
                             +     C  +   G C +G +C F H   
Sbjct: 44  ---------------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 51.9 bits (124), Expect = 6e-09
 Identities = 20/104 (19%), Positives = 28/104 (26%), Gaps = 42/104 (40%)

Query: 236 PCAFYLKNGTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLF 295
            C  Y ++G C++GA C+F H         G             KT+             
Sbjct: 14  LCRTYSESGRCRYGAKCQFAH---------GLGELRQANRHPKYKTEL------------ 52

Query: 296 SHAPAMLHNSKGLPIRPGELDCPFYLKTGSCKYGSTCRYNHPER 339
                                C  +   G C YGS C + H   
Sbjct: 53  ---------------------CHKFKLQGRCPYGSRCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 450 HCPYYMKTGTCKYGATCKFDHPP 472
            C  Y ++G C+YGA C+F H  
Sbjct: 14  LCRTYSESGRCRYGAKCQFAHGL 36

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 6/38 (15%), Positives = 10/38 (26%)

Query: 121 ESASNLPVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHP 158
                      +   + C  +     C +G  C F H 
Sbjct: 36  LGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHN 73

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 22/89 (24%), Positives = 27/89 (30%), Gaps = 28/89 (31%)

Query: 388 SPSLYPQRPGQME-CDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRRE 446
           S     + P + E C +Y+ TG C   E C + H                          
Sbjct: 2   SSGSSGELPKKRELCKFYI-TGFCARAENCPYMHGDFP---------------------- 38

Query: 447 GAVHCPYYMKTGTCKYGATCKFDHPPPGE 475
               C  Y  TG C  G  C F H P  E
Sbjct: 39  ----CKLYHTTGNCINGDDCMFSHDPLTE 63

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 25/82 (30%)

Query: 176 ASSESLPERPGEPD-CPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSE 234
            SS S  E P + + C +++ T  C     C + H                         
Sbjct: 1   GSSGSSGELPKKRELCKFYI-TGFCARAENCPYMHGDF---------------------- 37

Query: 235 PPCAFYLKNGTCKFGATCKFDH 256
            PC  Y   G C  G  C F H
Sbjct: 38  -PCKLYHTTGNCINGDDCMFSH 58

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 29/72 (40%)

Query: 138 CAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQ 197
           C +Y+    C   + C + H                             +  C  +  T 
Sbjct: 16  CKFYITGF-CARAENCPYMHG----------------------------DFPCKLYHTTG 46

Query: 198 RCKFGSKCKFNH 209
            C  G  C F+H
Sbjct: 47  NCINGDDCMFSH 58

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 46.0 bits (109), Expect = 6e-07
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 20/70 (28%)

Query: 190 CPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFG 249
           C ++L+   CK G +C+F H  D                  +     C FY K G C   
Sbjct: 19  CKHWLRG-LCKKGDQCEFLHEYD----------------MTK--MSECYFYSKFGECS-N 58

Query: 250 ATCKFDHPKD 259
             C F H   
Sbjct: 59  KECPFLHIDP 68

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 23/73 (31%)

Query: 401 CDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTC 460
           C ++++ G+CK G++C+F H  D    K                      C +Y K G C
Sbjct: 19  CKHWLR-GLCKKGDQCEFLHEYD--MTKMS-------------------ECYFYSKFGEC 56

Query: 461 KYGATCKFDHPPP 473
                C F H  P
Sbjct: 57  S-NKECPFLHIDP 68

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 27/86 (31%)

Query: 129 YPQRPGEKD--CAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPG 186
           +    GEK   C ++++   CK GD C+F H                     E    +  
Sbjct: 8   HSHMSGEKTVVCKHWLRGL-CKKGDQCEFLH---------------------EYDMTK-- 43

Query: 187 EPDCPYFLKTQRCKFGSKCKFNHPKD 212
             +C ++ K   C    +C F H   
Sbjct: 44  MSECYFYSKFGECS-NKECPFLHIDP 68

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 20/70 (28%)

Query: 190 CPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFG 249
           C ++L+   CK G +C+F H  D                  +   P C FY K G C   
Sbjct: 13  CKHWLRG-LCKKGDQCEFLHEYD----------------MTK--MPECYFYSKFGEC-SN 52

Query: 250 ATCKFDHPKD 259
             C F H   
Sbjct: 53  KECPFLHIDP 62

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 40.3 bits (94), Expect = 8e-05
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 23/73 (31%)

Query: 401 CDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTC 460
           C ++++ G+CK G++C+F H  D +                         C +Y K G C
Sbjct: 13  CKHWLR-GLCKKGDQCEFLHEYDMTKMP---------------------ECYFYSKFGEC 50

Query: 461 KYGATCKFDHPPP 473
                C F H  P
Sbjct: 51  S-NKECPFLHIDP 62

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 18/74 (24%)

Query: 401 CDYYMKTGVCKFGE-KCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGT 459
           C  Y + G C  GE  C+F HP D S     +  TV +             C  Y+K   
Sbjct: 9   CREYQR-GNCNRGENDCRFAHPAD-STMIDTNDNTVTV-------------CMDYIKGRC 53

Query: 460 CKYGATCKFDHPPP 473
            +    CK+ HPP 
Sbjct: 54  SR--EKCKYFHPPA 65

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 15/69 (21%)

Query: 190 CPYFLKTQRCKFG-SKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKF 248
           C  + +   C  G + C+F HP D                    +   C  Y+K    + 
Sbjct: 9   CREYQR-GNCNRGENDCRFAHPAD-----------STMIDTNDNTVTVCMDYIKGRCSR- 55

Query: 249 GATCKFDHP 257
              CK+ HP
Sbjct: 56  -EKCKYFHP 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	508
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.4
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.35
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.33
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.29
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.27
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.16
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.1
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.09
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.96
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.9
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.87
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.85
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.75
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.7
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.66
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.54
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	98.36
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	98.19
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	97.03
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	96.98
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	96.63
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	96.37
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	95.62
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	95.26
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	90.73
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	89.36

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.5e-13  Score=110.92  Aligned_cols=55  Identities=35%  Similarity=0.690  Sum_probs=48.1

Q ss_pred             CCCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937          185 PGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD  259 (508)
Q Consensus       185 ~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~  259 (508)
                      .++++|+||++ |.|++|++|+|+|+....                  .+++|+||+++|.|. |++|+|.|..+
T Consensus         8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~------------------~~~~C~~f~~~G~C~-~~~C~f~H~~~   62 (77)
T 2d9n_A            8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT------------------KMPECYFYSKFGECS-NKECPFLHIDP   62 (77)
T ss_dssp             CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT------------------TSCBCHHHHHTCCCC-CSSCSSBCCCT
T ss_pred             CcceeCHhHcc-CcCCCCCCCCCccccccC------------------cCCCCcccCCCCccC-CCCeeccCCCc
Confidence            36689999999 999999999999987532                  356899999889999 99999999875

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=7.7e-13  Score=108.03  Aligned_cols=68  Identities=24%  Similarity=0.530  Sum_probs=56.1

Q ss_pred             CCCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCC
Q 040937          133 PGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKD  212 (508)
Q Consensus       133 ~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~  212 (508)
                      ..+.+|+||++ |.|++|+.|+|+|+...                       .++++|++|++.|.|. |+.|+|.|...
T Consensus         8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~-----------------------~~~~~C~~f~~~G~C~-~~~C~f~H~~~   62 (77)
T 2d9n_A            8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM-----------------------TKMPECYFYSKFGECS-NKECPFLHIDP   62 (77)
T ss_dssp             CTTSBCHHHHT-TCCSCTTSSSSBCSCCT-----------------------TTSCBCHHHHHTCCCC-CSSCSSBCCCT
T ss_pred             CcceeCHhHcc-CcCCCCCCCCCcccccc-----------------------CcCCCCcccCCCCccC-CCCeeccCCCc
Confidence            44589999997 99999999999997531                       1346899999989998 99999999875


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCcccccccccC
Q 040937          213 KLIGSSDSGNGDVSALPERPSEPPCAFYLKNG  244 (508)
Q Consensus       213 ~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG  244 (508)
                      ..                  .+++|.+|++ |
T Consensus        63 ~~------------------~~~~C~~f~~-g   75 (77)
T 2d9n_A           63 ES------------------KIKDCPWSGP-S   75 (77)
T ss_dssp             TS------------------SCSSSSCCTT-T
T ss_pred             cc------------------cCCCCccccc-C
Confidence            43                  4579999987 5

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.33  E-value=5.6e-13  Score=108.33  Aligned_cols=67  Identities=28%  Similarity=0.667  Sum_probs=29.6

Q ss_pred             CCCCcCchhhhcCCCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCCC
Q 040937          395 RPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPP  473 (508)
Q Consensus       395 r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~p  473 (508)
                      +.++.+|++|++.|.|++|++|+|+|+..+++...            .....++.+|++|..+|.|++|.+|+|+|...
T Consensus         9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~------------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A            9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN------------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------------------
T ss_pred             CccchhCHHhhhCCCcCCCCCccCCCCChhhcccc------------ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence            46789999998789999999999999988766321            11234578999988889999999999999864

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.29  E-value=1.2e-12  Score=106.38  Aligned_cols=70  Identities=24%  Similarity=0.552  Sum_probs=27.4

Q ss_pred             CCCCCCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCC
Q 040937          130 PQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNH  209 (508)
Q Consensus       130 p~r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H  209 (508)
                      ..+.++.+|++|+++|.|++|++|+|+|+.....              ......+.++.+|++|+.+|.|++|++|+|+|
T Consensus         7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~--------------~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H   72 (77)
T 1m9o_A            7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR--------------QANRHPKYKTELCHKFKLQGRCPYGSRCHFIH   72 (77)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG--------------GTC-----------------------------
T ss_pred             CCCccchhCHHhhhCCCcCCCCCccCCCCChhhc--------------cccccccccCCcccchhhCcCCCCcCcCCCCC
Confidence            3456778999998889999999999999864210              00112345678999888779999999999999


Q ss_pred             CCCc
Q 040937          210 PKDK  213 (508)
Q Consensus       210 ~~~~  213 (508)
                      ...+
T Consensus        73 ~~~e   76 (77)
T 1m9o_A           73 NPTE   76 (77)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            8654

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.27  E-value=8.8e-13  Score=112.58  Aligned_cols=51  Identities=25%  Similarity=0.691  Sum_probs=45.2

Q ss_pred             CCCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937          185 PGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD  259 (508)
Q Consensus       185 ~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~  259 (508)
                      .++.+|++|++ |.|++|++|+|+|+                       ..+|++|+++|.|++|+.|+|.|...
T Consensus        11 ~k~~lC~~f~~-G~C~~G~~C~f~H~-----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           11 KKRELCKFYIT-GFCARAENCPYMHG-----------------------DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             CCCSBCTTTTT-TCCSCSTTCSSBSS-----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CCCccCccccc-CcCCCCCCCCCCCC-----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            46789999986 99999999999998                       15799997569999999999999864

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.16  E-value=7.7e-12  Score=100.86  Aligned_cols=55  Identities=33%  Similarity=0.626  Sum_probs=47.8

Q ss_pred             CCCCCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937          185 PGEPDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD  259 (508)
Q Consensus       185 ~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~  259 (508)
                      .++++|+||++ |.|++|++|+|+|+....                  .+++|+||++.|.|.+ ++|+|.|..+
T Consensus        14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~------------------~~~~C~~f~~~G~C~~-~~C~y~H~~p   68 (72)
T 2rhk_C           14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT------------------KMSECYFYSKFGECSN-KECPFLHIDP   68 (72)
T ss_dssp             CCCSBCHHHHT-TCCCCGGGSSSBCSCCTT------------------SCCBCHHHHHHSCCSB-TTCCSBCCCC
T ss_pred             CcCeeCHHHhc-CCCCCCCCCCCccccccc------------------cCCcccccCCCCCCCC-CCeeccCCCc
Confidence            35679999999 999999999999986432                  3578999998899998 9999999875

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.10  E-value=2.5e-11  Score=97.89  Aligned_cols=58  Identities=31%  Similarity=0.757  Sum_probs=49.3

Q ss_pred             CCCcCchhhhcCCCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCCCCc
Q 040937          396 PGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGE  475 (508)
Q Consensus       396 ~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~p~~  475 (508)
                      .++++|++|++ |.|++|++|+|+|+.+..                     +..+|+||+++|.|.+ ++|+|.|..|..
T Consensus        14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~---------------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT---------------------KMSECYFYSKFGECSN-KECPFLHIDPES   70 (72)
T ss_dssp             CCCSBCHHHHT-TCCCCGGGSSSBCSCCTT---------------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred             CcCeeCHHHhc-CCCCCCCCCCCccccccc---------------------cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence            56789999997 999999999999986432                     2578999999999999 999999999865


Q ss_pred             c
Q 040937          476 V  476 (508)
Q Consensus       476 ~  476 (508)
                      .
T Consensus        71 k   71 (72)
T 2rhk_C           71 K   71 (72)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.09  E-value=6.7e-11  Score=100.89  Aligned_cols=58  Identities=22%  Similarity=0.481  Sum_probs=48.4

Q ss_pred             CCCCCCCCCcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCC
Q 040937          127 PVYPQRPGEKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCK  206 (508)
Q Consensus       127 ~~~p~r~~~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~  206 (508)
                      ..+..+..+.+|+||+ +|.|++|+.|+|+|+.                            .+|++|+..|.|++|+.|+
T Consensus         5 H~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~~----------------------------~~C~~f~~~G~C~~G~~C~   55 (98)
T 2cqe_A            5 SSGELPKKRELCKFYI-TGFCARAENCPYMHGD----------------------------FPCKLYHTTGNCINGDDCM   55 (98)
T ss_dssp             CCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSSS----------------------------SBCSHHHHTSCCSSCTTCS
T ss_pred             ccCCCCCCCccCcccc-cCcCCCCCCCCCCCCC----------------------------CcCcCcccCCcCCCCCCCc
Confidence            3445556778999997 6999999999999962                            4899997569999999999


Q ss_pred             CCCCCCc
Q 040937          207 FNHPKDK  213 (508)
Q Consensus       207 f~H~~~~  213 (508)
                      |+|....
T Consensus        56 f~H~~~~   62 (98)
T 2cqe_A           56 FSHDPLT   62 (98)
T ss_dssp             SBCCCCC
T ss_pred             ccCCCCc
Confidence            9998643

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.96  E-value=1.2e-10  Score=93.21  Aligned_cols=59  Identities=29%  Similarity=0.651  Sum_probs=46.1

Q ss_pred             CCCccccccCCCCCCCC-CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937          187 EPDCPYFLKTQRCKFGS-KCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD  259 (508)
Q Consensus       187 ~~~C~~f~~tG~C~~G~-~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~  259 (508)
                      .++|++|++ |.|++|+ .|+|+|+......           -+.....++|++|++ |.|.++ +|+|.|+..
T Consensus         6 ~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~-----------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A            6 LEVCREYQR-GNCNRGENDCRFAHPADSTMI-----------DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA   65 (70)
T ss_dssp             EEBCHHHHT-TCCSSCTTTCSSBCCCTTSCC-----------BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred             chhCHHHhc-CCCCCCCCCCCCccCcccccc-----------cccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence            358999998 9999999 5999998754310           011124679999999 999988 999999763

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=1.3e-10  Score=99.10  Aligned_cols=60  Identities=30%  Similarity=0.625  Sum_probs=47.9

Q ss_pred             CCCCccccccCCCCCCCC-CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937          186 GEPDCPYFLKTQRCKFGS-KCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD  259 (508)
Q Consensus       186 ~~~~C~~f~~tG~C~~G~-~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~  259 (508)
                      +.++|++|++ |.|++|+ .|+|+|+......           .+.....++|.+|++ |.|.++ +|+|.|+..
T Consensus        19 k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~-----------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~   79 (98)
T 2e5s_A           19 KLEVCREFQR-GNCARGETDCRFAHPADSTMI-----------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPA   79 (98)
T ss_dssp             EEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC-----------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred             hhhhhHHHhc-CcCCCCCCCCCCcCCchhccc-----------cccCCccccchhhcc-CCCCCC-CcCccCChH
Confidence            3469999999 9999999 7999999865310           011224679999999 999988 999999874

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=3.1e-10  Score=96.78  Aligned_cols=68  Identities=29%  Similarity=0.652  Sum_probs=52.9

Q ss_pred             CCCCCCCCCcCchhhhcCCCCCCCC-CCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCC
Q 040937          390 SLYPQRPGQMECDYYMKTGVCKFGE-KCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKF  468 (508)
Q Consensus       390 ~~~p~r~k~~~C~~y~~~G~C~~G~-~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f  468 (508)
                      ..+....+..+|++|++ |.|.+|+ .|+|+|+.+.....              +......+|.+|++ |.|.+| +|+|
T Consensus        12 ~K~~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~--------------~~~~~~~vC~~flk-G~C~r~-~C~y   74 (98)
T 2e5s_A           12 QKLLRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMID--------------TSDNTVTVCMDYIK-GRCMRE-KCKY   74 (98)
T ss_dssp             CCCCCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC--------------TTTCEEEBCHHHHH-TCCCCT-TCCS
T ss_pred             ccccChhhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc--------------ccCCccccchhhcc-CCCCCC-CcCc
Confidence            33334456789999997 9999998 89999998754321              11234789999999 999998 9999


Q ss_pred             CCCCCC
Q 040937          469 DHPPPG  474 (508)
Q Consensus       469 ~H~~p~  474 (508)
                      .|+++.
T Consensus        75 ~H~~~~   80 (98)
T 2e5s_A           75 FHPPAH   80 (98)
T ss_dssp             BCCCHH
T ss_pred             cCChHH
Confidence            999753

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.85  E-value=7.3e-10  Score=88.73  Aligned_cols=60  Identities=35%  Similarity=0.800  Sum_probs=47.8

Q ss_pred             CCcCchhhhcCCCCCCCC-CCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCcccccCccccCCCCCCCCCCCCC
Q 040937          397 GQMECDYYMKTGVCKFGE-KCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPP  473 (508)
Q Consensus       397 k~~~C~~y~~~G~C~~G~-~C~f~H~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~C~~y~~~G~C~fG~~C~f~H~~p  473 (508)
                      +..+|++|++ |.|.+|+ .|+|+|+.+.....              +...++.+|.+|++ |.|..| +|+|.|+++
T Consensus         5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~--------------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A            5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMID--------------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA   65 (70)
T ss_dssp             EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB--------------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred             cchhCHHHhc-CCCCCCCCCCCCccCccccccc--------------ccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence            3569999985 9999999 59999997654311              11234789999999 999998 999999964

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.75  E-value=3.4e-09  Score=87.66  Aligned_cols=57  Identities=30%  Similarity=0.546  Sum_probs=45.8

Q ss_pred             CCCccccccCCCCCCCC-CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937          187 EPDCPYFLKTQRCKFGS-KCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD  259 (508)
Q Consensus       187 ~~~C~~f~~tG~C~~G~-~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~  259 (508)
                      .++|++|++ |.|.+|+ .|+|+|+......         .    ....++|.+|++ |.|.++ .|+|.|+..
T Consensus         9 ~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~---------~----~~~~~vC~dflk-G~C~r~-~C~y~H~~~   66 (83)
T 3d2n_A            9 LEVCREFQR-GTCSRPDTECKFAHPSKSCQV---------E----NGRVIACFDSLK-GRCSRE-NCKYLHPPP   66 (83)
T ss_dssp             EEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE---------E----TTEEECCHHHHT-TCCCCS-SCSSCCCCH
T ss_pred             chhcHHHhc-CCCCCCCCCCCCcCCCccccc---------c----CCceeehhHhhh-ccccCC-CcceeCChH
Confidence            368999999 9999997 9999999754200         0    113579999999 999987 999999874

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.70  E-value=5.5e-09  Score=87.44  Aligned_cols=57  Identities=30%  Similarity=0.563  Sum_probs=46.1

Q ss_pred             CCCccccccCCCCCCCC-CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937          187 EPDCPYFLKTQRCKFGS-KCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD  259 (508)
Q Consensus       187 ~~~C~~f~~tG~C~~G~-~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~  259 (508)
                      .++|++|++ |.|.+|+ .|+|+|+.......             ....++|.+|++ |.|.++ .|+|.|+..
T Consensus        17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~-------------~~~~~vC~dflk-G~C~r~-~Cky~H~~~   74 (89)
T 2rpp_A           17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE-------------NGRVIACFDSLK-GRCSRE-NCKYLHPPT   74 (89)
T ss_dssp             ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB-------------TTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred             hhhchHHhc-CCCCCCCCCCCCcCCCcccccc-------------CCceeeehhhhh-CcCCCC-CcceecCHH
Confidence            469999999 9999998 99999997643100             113578999999 999966 999999874

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.66  E-value=7e-09  Score=85.75  Aligned_cols=58  Identities=34%  Similarity=0.615  Sum_probs=45.6

Q ss_pred             cCccccccCCCCCCCC-CCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 040937          136 KDCAYYMQTRTCKFGD-TCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL  214 (508)
Q Consensus       136 ~~C~~f~~tG~C~~G~-~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~  214 (508)
                      ++|++|++ |.|.+|| .|+|+|+.....           +       .....++|.+|++ |.|.++ .|+|.|.....
T Consensus        10 ~VCr~Flr-G~C~r~d~~C~f~H~~~~~~-----------~-------~~~~~~vC~dflk-G~C~r~-~C~y~H~~~~l   68 (83)
T 3d2n_A           10 EVCREFQR-GTCSRPDTECKFAHPSKSCQ-----------V-------ENGRVIACFDSLK-GRCSRE-NCKYLHPPPHL   68 (83)
T ss_dssp             EBCTTGGG-TCCCSCTTTCSSBCCCTTCC-----------E-------ETTEEECCHHHHT-TCCCCS-SCSSCCCCHHH
T ss_pred             hhcHHHhc-CCCCCCCCCCCCcCCCcccc-----------c-------cCCceeehhHhhh-ccccCC-CcceeCChHHH
Confidence            69999998 9999997 999999863210           0       0112468999999 999998 99999997654

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.54  E-value=2.2e-08  Score=83.77  Aligned_cols=58  Identities=33%  Similarity=0.586  Sum_probs=45.8

Q ss_pred             cCccccccCCCCCCCC-CCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 040937          136 KDCAYYMQTRTCKFGD-TCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL  214 (508)
Q Consensus       136 ~~C~~f~~tG~C~~G~-~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~  214 (508)
                      ++|++|++ |.|.+|+ .|+|+|+.....     +.             .....+|.+|++ |.|.++ .|+|.|.....
T Consensus        18 ~VCrdFlr-G~C~r~d~~CrfsH~~~~~~-----v~-------------~~~~~vC~dflk-G~C~r~-~Cky~H~~~hl   76 (89)
T 2rpp_A           18 EVCRQFQR-GTCSRSDEECKFAHPPKSCQ-----VE-------------NGRVIACFDSLK-GRCSRE-NCKYLHPPTHL   76 (89)
T ss_dssp             CBCHHHHH-TCCCCCTTTSSSBCCCSSSC-----CB-------------TTBEEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred             hhchHHhc-CCCCCCCCCCCCcCCCcccc-----cc-------------CCceeeehhhhh-CcCCCC-CcceecCHHHH
Confidence            69999998 9999998 999999864210     00             113468999999 999887 99999997654

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=98.36  E-value=9.9e-08  Score=91.78  Aligned_cols=89  Identities=21%  Similarity=0.547  Sum_probs=63.9

Q ss_pred             cCccccccCCCCC----CCCCCCccCCCCCCCC-------CCCCCCccc---ccccCCC--CCCCCCCCCccccccC---
Q 040937          136 KDCAYYMQTRTCK----FGDTCKFDHPIWVPEG-------GIPDWKEVP---VIASSES--LPERPGEPDCPYFLKT---  196 (508)
Q Consensus       136 ~~C~~f~~tG~C~----~G~~CkF~H~~~~~~g-------g~~~~~~~~---~~~~~~~--~p~r~~~~~C~~f~~t---  196 (508)
                      .+|++|+. |.|.    .+..|+|.|++..+++       ++....+..   ++-.+.+  +|     ++|.+| +.   
T Consensus        90 HLCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLP-----eiC~~Y-kG~g~  162 (229)
T 3u9g_A           90 HLCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLP-----EICKSY-KGEGR  162 (229)
T ss_dssp             CCCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSC-----CBCTTC-CCSSS
T ss_pred             eechhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCc-----hHHHHh-CCCCC
Confidence            79999995 9993    3578999999865332       222222110   1111111  23     699999 72   


Q ss_pred             -CCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 040937          197 -QRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKD  259 (508)
Q Consensus       197 -G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~  259 (508)
                       |.|++++.|..+|                          +|++|++ |.|+| ..|+-+|...
T Consensus       163 ~g~C~~~~~C~kLH--------------------------IC~~Fl~-G~C~f-~~CkRsH~~~  198 (229)
T 3u9g_A          163 KQTCGQPQPCERLH--------------------------ICEHFTR-GNCSY-LNCLRSHNLM  198 (229)
T ss_dssp             CCSCSSSSCCCSBC--------------------------SCHHHHT-TCCCC-SSCSSCCCTT
T ss_pred             CCcCCCCCCCccee--------------------------ccchhhc-CCcCC-CCccCccCcc
Confidence             5899999999999                          6999998 99999 8999999874

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=98.19  E-value=4.9e-07  Score=86.99  Aligned_cols=83  Identities=28%  Similarity=0.472  Sum_probs=61.8

Q ss_pred             CccccccCCCC----CCCCCCCCCCCCCcccCCCCCC-----------------CCCCCCCCCCCCCcccccccc----c
Q 040937          189 DCPYFLKTQRC----KFGSKCKFNHPKDKLIGSSDSG-----------------NGDVSALPERPSEPPCAFYLK----N  243 (508)
Q Consensus       189 ~C~~f~~tG~C----~~G~~C~f~H~~~~~~~~~~~~-----------------~~~~~~~P~r~~~~~C~~f~k----t  243 (508)
                      +|++|+- |.|    ..+..|+|+|+.....+.....                 .+|..-+|     .+|.+| +    .
T Consensus        91 LCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLP-----eiC~~Y-kG~g~~  163 (229)
T 3u9g_A           91 LCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLP-----EICKSY-KGEGRK  163 (229)
T ss_dssp             CCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSC-----CBCTTC-CCSSSC
T ss_pred             echhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCc-----hHHHHh-CCCCCC
Confidence            8999998 999    3457899999986542111000                 11222334     489999 7    3


Q ss_pred             CCCCCCCCCcCCCCCCCCCCCCCCCCCCccccccccccccccCcCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCc
Q 040937          244 GTCKFGATCKFDHPKDFQLPSVGQENGIGEQNESVIKTDETTGLLNPGMSLFSHAPAMLHNSKGLPIRPGELDCPFYLKT  323 (508)
Q Consensus       244 G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~q~~s~~~~~~~~g~~~~~~~~~~~~Pa~~~~s~~~P~rpg~~~C~~y~kt  323 (508)
                      |.|++++.|...|                                                           +|++|++ 
T Consensus       164 g~C~~~~~C~kLH-----------------------------------------------------------IC~~Fl~-  183 (229)
T 3u9g_A          164 QTCGQPQPCERLH-----------------------------------------------------------ICEHFTR-  183 (229)
T ss_dssp             CSCSSSSCCCSBC-----------------------------------------------------------SCHHHHT-
T ss_pred             CcCCCCCCCccee-----------------------------------------------------------ccchhhc-
Confidence            5899999999999                                                           5999998 


Q ss_pred             ccCCCCCCCCCCCCCC
Q 040937          324 GSCKYGSTCRYNHPER  339 (508)
Q Consensus       324 G~Ck~G~~Crf~Hp~~  339 (508)
                      |.|+| ..|+-.|.-.
T Consensus       184 G~C~f-~~CkRsH~~~  198 (229)
T 3u9g_A          184 GNCSY-LNCLRSHNLM  198 (229)
T ss_dssp             TCCCC-SSCSSCCCTT
T ss_pred             CCcCC-CCccCccCcc
Confidence            99999 8999999753

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=97.03  E-value=2.6e-06  Score=69.71  Aligned_cols=66  Identities=29%  Similarity=0.622  Sum_probs=52.8

Q ss_pred             CcCccccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 040937          135 EKDCAYYMQTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPVIASSESLPERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL  214 (508)
Q Consensus       135 ~~~C~~f~~tG~C~~G~~CkF~H~~~~~~gg~~~~~~~~~~~~~~~~p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~  214 (508)
                      .+.|+||.   .|+. ..|.|.|+..                          ...|+++..   |+. ..|.|.|+.   
T Consensus         9 ~e~CKf~~---~Ctn-~~C~f~Hp~~--------------------------~~~Cr~g~~---C~~-~~C~f~HP~---   51 (80)
T 2lhn_A            9 LEQCKFGT---HCTN-KRCKYRHARS--------------------------HIMCREGAN---CTR-IDCLFGHPI---   51 (80)
Confidence            47999997   4999 9999999641                          137999876   986 789999973   


Q ss_pred             cCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCCC
Q 040937          215 IGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHPKDF  260 (508)
Q Consensus       215 ~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~~~~  260 (508)
                                         ...|+|+..   |++ ..|.|.|+...
T Consensus        52 -------------------~~~Crf~~~---C~n-~~C~F~Hp~g~   74 (80)
T 2lhn_A           52 -------------------NEDCRFGVN---CKN-IYCLFRHPPGR   74 (80)
Confidence                               246999876   995 89999997654

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=96.98  E-value=3.2e-06  Score=69.13  Aligned_cols=41  Identities=27%  Similarity=0.708  Sum_probs=34.3

Q ss_pred             CCccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCcCCCC
Q 040937          188 PDCPYFLKTQRCKFGSKCKFNHPKDKLIGSSDSGNGDVSALPERPSEPPCAFYLKNGTCKFGATCKFDHP  257 (508)
Q Consensus       188 ~~C~~f~~tG~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~P~r~~~~~C~~f~ktG~C~~G~~C~F~H~  257 (508)
                      +.|+||..   |.. ..|+|.|...                     .++|+++..   |++ .+|.|.|+
T Consensus        10 e~CKf~~~---Ctn-~~C~f~Hp~~---------------------~~~Cr~g~~---C~~-~~C~f~HP   50 (80)
T 2lhn_A           10 EQCKFGTH---CTN-KRCKYRHARS---------------------HIMCREGAN---CTR-IDCLFGHP   50 (80)
Confidence            58999987   988 9999999742                     248999976   995 88999996

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.63  E-value=0.0005  Score=54.41  Aligned_cols=23  Identities=48%  Similarity=0.974  Sum_probs=20.9

Q ss_pred             CCCcccccCccccCCCCCCCCCCC
Q 040937          448 AVHCPYYMKTGTCKYGATCKFDHP  471 (508)
Q Consensus       448 ~~~C~~y~~~G~C~fG~~C~f~H~  471 (508)
                      ..+|..|+. |.|+||++|.|+|-
T Consensus        20 ~~LC~~~~~-G~C~~G~~C~FAHG   42 (69)
T 2d9m_A           20 FSICDRYMN-GTCPEGNSCKFAHG   42 (69)
T ss_dssp             CSBCHHHHH-SCCSSCSSCSSBSS
T ss_pred             cccCcccCc-CCCCCCCccCCcCC
Confidence            589999954 99999999999996

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.37  E-value=0.00064  Score=53.80  Aligned_cols=28  Identities=29%  Similarity=0.611  Sum_probs=24.8

Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCCCcc
Q 040937          186 GEPDCPYFLKTQRCKFGSKCKFNHPKDKL  214 (508)
Q Consensus       186 ~~~~C~~f~~tG~C~~G~~C~f~H~~~~~  214 (508)
                      +..+|+.|++ |.|++|+.|.|+|...++
T Consensus        19 k~~LC~~~~~-G~C~~G~~C~FAHG~~EL   46 (69)
T 2d9m_A           19 YFSICDRYMN-GTCPEGNSCKFAHGNAEL   46 (69)
T ss_dssp             CCSBCHHHHH-SCCSSCSSCSSBSSHHHH
T ss_pred             CcccCcccCc-CCCCCCCccCCcCCHHHH
Confidence            4479999966 999999999999998776

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=95.62  E-value=0.0067  Score=44.68  Aligned_cols=28  Identities=29%  Similarity=0.617  Sum_probs=25.7

Q ss_pred             CCCcCchhhhcCCCCCCCCCCCCCCCCC
Q 040937          396 PGQMECDYYMKTGVCKFGEKCKFHHPID  423 (508)
Q Consensus       396 ~k~~~C~~y~~~G~C~~G~~C~f~H~~~  423 (508)
                      .++.+|..|...|+|+.|.+|.+.|+.+
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            4578999999999999999999999876

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=95.26  E-value=0.0047  Score=45.50  Aligned_cols=27  Identities=22%  Similarity=0.477  Sum_probs=24.8

Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCCC
Q 040937          186 GEPDCPYFLKTQRCKFGSKCKFNHPKD  212 (508)
Q Consensus       186 ~~~~C~~f~~tG~C~~G~~C~f~H~~~  212 (508)
                      .+.+|..|...|+|++|..|+++|+.+
T Consensus        19 ~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           19 PTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             ccchhhhccccccCCCCCCCCccccCC
Confidence            567999999999999999999999975

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=90.73  E-value=0.061  Score=52.46  Aligned_cols=27  Identities=33%  Similarity=0.861  Sum_probs=24.8

Q ss_pred             CCCcccccCccccCCCCCCCCCCCCCCc
Q 040937          448 AVHCPYYMKTGTCKYGATCKFDHPPPGE  475 (508)
Q Consensus       448 ~~~C~~y~~~G~C~fG~~C~f~H~~p~~  475 (508)
                      ..+|.||.+ |.|+.|..|.|.|..|..
T Consensus        70 ~~~C~ffak-G~C~~G~~C~y~H~lPt~   96 (240)
T 3u1l_A           70 LFFCLFFAK-GMCCLGPKCEYLHHIPDE   96 (240)
T ss_dssp             CSBCHHHHT-TCCSCGGGCSSBBSCCCH
T ss_pred             CeEcCcccc-CCCCCCCCCCccCCCCCc
Confidence            469999999 999999999999998875

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=89.36  E-value=0.1  Score=50.92  Aligned_cols=25  Identities=32%  Similarity=0.675  Sum_probs=22.6

Q ss_pred             CCccccccCCCCCCCCCCCCCCCCCc
Q 040937          188 PDCPYFLKTQRCKFGSKCKFNHPKDK  213 (508)
Q Consensus       188 ~~C~~f~~tG~C~~G~~C~f~H~~~~  213 (508)
                      .+|.||.+ |.|++|+.|+|+|....
T Consensus        71 ~~C~ffak-G~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           71 FFCLFFAK-GMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             SBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred             eEcCcccc-CCCCCCCCCCccCCCCC
Confidence            58999999 99999999999998644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	508
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.001
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.002
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.002
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.002
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.004
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.001
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.002
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.002
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.002
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	0.002

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 451 CPYYMKTGTCKYGATCKFDH 470
           C  + ++GTCKYG  C+F H
Sbjct: 9   CRPFEESGTCKYGEKCQFAH 28

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 190 CPYFLKTQRCKFGSKCKFNHPKDKL 214
           C  F ++  CK+G KC+F H   +L
Sbjct: 9   CRPFEESGTCKYGEKCQFAHGFHEL 33

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 401 CDYYMKTGVCKFGEKCKFHHPID 423
           C  + ++G CK+GEKC+F H   
Sbjct: 9   CRPFEESGTCKYGEKCQFAHGFH 31

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 317 CPFYLKTGSCKYGSTCRYNHPER 339
           C  + ++G+CKYG  C++ H   
Sbjct: 9   CRPFEESGTCKYGEKCQFAHGFH 31

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.004
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 236 PCAFYLKNGTCKFGATCKFDHPKD 259
            C  + ++GTCK+G  C+F H   
Sbjct: 8   LCRPFEESGTCKYGEKCQFAHGFH 31

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 451 CPYYMKTGTCKYGATCKFDH 470
           C  Y ++G C+YGA C+F H
Sbjct: 12  CRTYSESGRCRYGAKCQFAH 31

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 190 CPYFLKTQRCKFGSKCKFNHPKDKL 214
           C  + ++ RC++G+KC+F H   +L
Sbjct: 12  CRTYSESGRCRYGAKCQFAHGLGEL 36

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 401 CDYYMKTGVCKFGEKCKFHHPID 423
           C  Y ++G C++G KC+F H + 
Sbjct: 12  CRTYSESGRCRYGAKCQFAHGLG 34

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 317 CPFYLKTGSCKYGSTCRYNHPER 339
           C  Y ++G C+YG+ C++ H   
Sbjct: 12  CRTYSESGRCRYGAKCQFAHGLG 34

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 0.002
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 401 CDYYMKTGVCKFGEKCKFHHPID 423
           C  +   G C +G +C F H  D
Sbjct: 11  CRTFHTIGFCPYGPRCHFIHNAD 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	508
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.15
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.12
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.07
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.02
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.0
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.92
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.55
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.38
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.43
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.33
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	92.91
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	87.68

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=6.8e-07  Score=62.02  Aligned_cols=33  Identities=30%  Similarity=0.728  Sum_probs=29.9

Q ss_pred             CCCCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 040937          182 PERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL  214 (508)
Q Consensus       182 p~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~  214 (508)
                      +.++|+.+|++|++.|.|++|+.|.|+|...++
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~EL   36 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGEL   36 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHh
Confidence            457899999999988999999999999998876

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=8.9e-07  Score=61.41  Aligned_cols=34  Identities=29%  Similarity=0.706  Sum_probs=30.7

Q ss_pred             CCCCCcCchhhhcCCCCCCCCCCCCCCCCCcccc
Q 040937          394 QRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAA  427 (508)
Q Consensus       394 ~r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~~~  427 (508)
                      .+.|+.+|++|.+.|.|++|++|.|+|..++++.
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   38 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ   38 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHHhcC
Confidence            4578999999998999999999999999988764

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.9e-07  Score=61.62  Aligned_cols=29  Identities=28%  Similarity=0.626  Sum_probs=26.8

Q ss_pred             CCCCCCccccccCCCCCCCCCCCCCCCCC
Q 040937          184 RPGEPDCPYFLKTQRCKFGSKCKFNHPKD  212 (508)
Q Consensus       184 r~~~~~C~~f~~tG~C~~G~~C~f~H~~~  212 (508)
                      ++||.+|+.|..+|.|++|++|.|+|...
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCC
Confidence            57899999999999999999999999865

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=4.2e-07  Score=61.65  Aligned_cols=32  Identities=34%  Similarity=0.751  Sum_probs=29.1

Q ss_pred             CCCCcCchhhhcCCCCCCCCCCCCCCCCCccc
Q 040937          395 RPGQMECDYYMKTGVCKFGEKCKFHHPIDRSA  426 (508)
Q Consensus       395 r~k~~~C~~y~~~G~C~~G~~C~f~H~~~~~~  426 (508)
                      +.|+.+|++|.+.|.|++|++|.|+|..++++
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHcc
Confidence            57889999999889999999999999988775

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=4.7e-07  Score=61.39  Aligned_cols=32  Identities=34%  Similarity=0.679  Sum_probs=28.8

Q ss_pred             CCCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 040937          183 ERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL  214 (508)
Q Consensus       183 ~r~~~~~C~~f~~tG~C~~G~~C~f~H~~~~~  214 (508)
                      .++||.+|++|...|.|++|++|.|+|...++
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~EL   33 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHEL   33 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHc
Confidence            36789999999887999999999999998876

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.1e-06  Score=58.81  Aligned_cols=29  Identities=28%  Similarity=0.732  Sum_probs=26.7

Q ss_pred             CCCCcCchhhhcCCCCCCCCCCCCCCCCC
Q 040937          395 RPGQMECDYYMKTGVCKFGEKCKFHHPID  423 (508)
Q Consensus       395 r~k~~~C~~y~~~G~C~~G~~C~f~H~~~  423 (508)
                      +.|+.+|+.|.+.|.|++|++|.|+|..+
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCC
Confidence            57899999999999999999999999865

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2e-05  Score=49.32  Aligned_cols=24  Identities=17%  Similarity=0.587  Sum_probs=21.8

Q ss_pred             CCCCccccccCCCCCCCCCCCCCCC
Q 040937          186 GEPDCPYFLKTQRCKFGSKCKFNHP  210 (508)
Q Consensus       186 ~~~~C~~f~~tG~C~~G~~C~f~H~  210 (508)
                      +.++|+||+. |.|.+|++|.|.|.
T Consensus         5 kkelCKfYvq-GyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYIT-GFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTTT-TCCSCSTTCSSBSS
T ss_pred             hhhhhhhhee-eeecCCcCcccccC
Confidence            3469999998 99999999999996

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=4.3e-05  Score=47.78  Aligned_cols=24  Identities=29%  Similarity=0.794  Sum_probs=21.8

Q ss_pred             CCcccccccccCCCCCCCCCcCCCC
Q 040937          233 SEPPCAFYLKNGTCKFGATCKFDHP  257 (508)
Q Consensus       233 ~~~~C~~f~ktG~C~~G~~C~F~H~  257 (508)
                      +..+|+||++ |.|.+|++|.|.|.
T Consensus         5 kkelCKfYvq-GyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYIT-GFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTTT-TCCSCSTTCSSBSS
T ss_pred             hhhhhhhhee-eeecCCcCcccccC
Confidence            4568999998 99999999999996

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0022  Score=46.46  Aligned_cols=24  Identities=38%  Similarity=0.905  Sum_probs=21.1

Q ss_pred             ccccccccCCCCCCCCCcCCCCCC
Q 040937          236 PCAFYLKNGTCKFGATCKFDHPKD  259 (508)
Q Consensus       236 ~C~~f~ktG~C~~G~~C~F~H~~~  259 (508)
                      +|+||..++.|..|++|+|+|...
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~pL   25 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDPL   25 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CcceeecCCcccCCCcccccCCcc
Confidence            699999867999999999999653

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0024  Score=46.25  Aligned_cols=25  Identities=28%  Similarity=0.640  Sum_probs=21.7

Q ss_pred             CccccccCCCCCCCCCCCCCCCCCc
Q 040937          189 DCPYFLKTQRCKFGSKCKFNHPKDK  213 (508)
Q Consensus       189 ~C~~f~~tG~C~~G~~C~f~H~~~~  213 (508)
                      .|+||..++.|-.|++|+|+|.+..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~pLt   26 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDPLT   26 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             CcceeecCCcccCCCcccccCCccC
Confidence            4999998779999999999997643

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.032  Score=36.46  Aligned_cols=27  Identities=30%  Similarity=0.634  Sum_probs=24.0

Q ss_pred             CCCcCchhhhcCCCCCCCCCCCCCCCC
Q 040937          396 PGQMECDYYMKTGVCKFGEKCKFHHPI  422 (508)
Q Consensus       396 ~k~~~C~~y~~~G~C~~G~~C~f~H~~  422 (508)
                      ..+.+|..|.-.|+|+.|.+|..+|++
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCcC
Confidence            346799999999999999999999963

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.68  E-value=0.1  Score=34.07  Aligned_cols=26  Identities=23%  Similarity=0.539  Sum_probs=23.5

Q ss_pred             CCCCCcccccCccccCCCCCCCCCCC
Q 040937          446 EGAVHCPYYMKTGTCKYGATCKFDHP  471 (508)
Q Consensus       446 ~~~~~C~~y~~~G~C~fG~~C~f~H~  471 (508)
                      ..+.+|..|..+|.|+.|..|-..|.
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCc
Confidence            34789999999999999999999886