Citrus Sinensis ID: 040943

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950

MERIYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTLQLKMQNEEISVMLLELENDQEMLEKSLRCQRHLEEQAKQIESDSERKLGEVSNALDIANLELAKEREKTASLSEVVESLDHIEEQRVLMEKELQKNKEKLEEASRYQLCIEEKAKQMESDSKRKLQEATDALDIANSELAEKTSEGHQIEFELWIWKSIAERLKFELEENQELRKELEASLLAQVEVGEVIKQENCGLTHSLEERDSRISKFQQQILSLEQDLKLKALEAASNARMETAMSFEIEKQRFSQITKEKDEILEDLQRQIGWLEEESLRRELESSLLTQICAERSFEHEKESLIQLLEEKNQKIDDLLQLVRSLEERFNSSLNSFSSQLAGKQAEISLAIEAWEKISAAETLAMLEIEEKKLMIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLEDVLKLSSERENLLGFLGGLGDRVSKFSDEDMQLMEMLGRLVQSLDSKSGLVLKGDDLFESVKENVNAHPSPATMKKVNTSLEERSPFK

cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHccccccccc

cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHcccccccccccccccccccccccc

MERIYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEaneknidqeQKVNVFKAEIEGLKGLLSASQKKCVKAEseakapkklRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTLQLKMQNEEISVMLLELENDQEMLEKSLRCQRHLEEQAKQIESDSERKLGEVSNALDIANLELAKEREKTASLSEVVESLDHIEEQRVLMEKELQKNKEKLEEASRYQLCIEEKAKQMESDSKRKLQEATDALDIANSelaektseghqIEFELWIWKSIAERLKFELEENQELRKELEASLLAQVEVGEVikqencglthslEERDSRISKFQQQILSLEQDLKLKALEAASNARMETAMSFEIEKQRFSQITKEKDEILEDLQRQIGWLEEESLRRELESSLLTQICAERSFEHEKESLIQLLEEKNQKIDDLLQLVRSLEERFNSSLNSFSSQLAGKQAEISLAIEAWEKISAAETLAMLEIEEKKLMIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLEDVLKLSSERENLLGFLGGLgdrvskfsdEDMQLMEMLGRLVQSldsksglvlkgddLFESVKenvnahpspatmKKVNTsleerspfk

MERIYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARElnekteeisevkqLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALdeaneknidqeqkvNVFKAEIEGLKGLLSASQKKCvkaeseakapkklrerDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALrhslgtketfyKEMEYQATKLERENQELLMSLKELQEAQIqkagsssslakLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTLQLKMQNEEISVMLLELENDQEMLEKSLRCQRHLEEQAKqiesdserklgevsNALDIANLELAKEREKTASLSEVVESLDHIEEQRVLMEKELQKNKEKLEEASRYQLCIEEKAKQMESDSKRKLQEATDALDIANSelaektseghqiEFELWIWKSIAERLKFELEENQELRKELEASLLAQVEVGEVIKQENCGLTHSLEERDSRISKFQQQILSLEQDLKLKALEAASNARMETAMSFEIEKQRFSQITKEKDEILEDLQRQIGWLEEESLRRELESSLLTQICAERSFEHEKESLIQLLEEKNQKIDDLLQLVRSLEERFNSSLNSFSSQLAGKQAEISLAIEAWEKISAAETLAMLEIEEKKLMIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQleenlttsdaLVIELRSENRKLLEDVLKLSSERENLLGFLGGLGDRVSKFSDEDMQLMEMLGRLVQSLDSKSGLVLKGDDLFESVKenvnahpspatmkkvntsleerspfk

MERIYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTLQLKMQNEEISVMLLELENDQEMLEKSLRCQRHLEEQAKQIESDSERKLGEVSNALDIANLELAKEREKTASLSEVVESLDHIEEQRVlmekelqknkekleeASRYQLCIEEKAKQMESDSKRKLQEATDALDIANSELAEKTSEGHQIEFELWIWKSIAERLKFELEENQELRKELEASLLAQVEVGEVIKQENCGLTHSLEERDSRISKFQQQILSLEQDLKLKALEAASNARMETAMSFEIEKQRFSQITKEKDEILEDLQRQIGWleeeslrrelessllTQICAERSFEHEKESLIQLLEEKNQKIDDLLQLVRSLEERfnsslnsfssqlAGKQAEISLAIEAWEKISAAETLAMLEIEEKKLMIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLEDVLKLSSERENLLGFLGGLGDRVSKFSDEDMQLMEMLGRLVQSLDSKSGLVLKGDDLFESVKENVNAHPSPATMKKVNTSLEERSPFK

*********************************************************************LFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEAN********KVNVFKAEIEGLKGL*******************************************************************************************************LC***********KYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYK***************************************************************************************************YHSLTLQLKM***EISVMLL************************************************************************************************************************************HQIEFELWIWKSIAERLKFELEENQELRKELEASLLAQVEVGEVIKQENCGLT***********************************************************ILEDLQRQIGWLEE*********SLLTQICAERSF******LIQLLE****KIDDLLQLVRSL******************QAEISLAIEAWEKISAAETLAMLEIEEKKLMIVELE*****************************************************ALVIELR***RKLLEDVLKLSSERENLLGFLGGLGDRVSKF******LMEMLGRLV********LVL************************************

*E**YEE*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

MERIYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLL*****************KKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQ***********SLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTLQLKMQNEEISVMLLELENDQEMLEKSLRCQRHLEEQAKQIESDSERKLGEVSNALDIANLELAKEREKTASLSEVVESLDHIEEQRVLMEKELQKNKEKLEEASRYQLCIEEKA***********QEATDALDIANSELAEKTSEGHQIEFELWIWKSIAERLKFELEENQELRKELEASLLAQVEVGEVIKQENCGLTHSLEERDSRISKFQQQILSLEQDLKLKALEAASNARMETAMSFEIEKQRFSQITKEKDEILEDLQRQIGWLEEESLRRELESSLLTQICAERSFEHEKESLIQLLEEKNQKIDDLLQLVRSLEERFNSSLNSFSSQLAGKQAEISLAIEAWEKISAAETLAMLEIEEKKLMIVELEDEISNVQQKLELQ************KIEAELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLEDVLKLSSERENLLGFLGGLGDRVSKFSDEDMQLMEMLGRLVQSLDSKSGLVLKGDDLFESVKENVNAHPSPATMKKV***********

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		950	2.2.26 [Sep-21-2011]
P0CB23		1050	Uncharacterized protein A	yes	no	0.581	0.525	0.507	1e-137

>sp\|P0CB23\|Y4862_ARATH Uncharacterized protein At4g38062 OS=Arabidopsis thaliana GN=At4g38062 PE=2 SV=1	Back alignment and function desciption

 Score =  490 bits (1261), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 289/569 (50%), Positives = 413/569 (72%), Gaps = 17/569 (2%)

Query: 1   MERIYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEK 60
           ME++YEELDE+KA NEKLR D ++K+EL  NLKK  NE L++I+EA L  EK   E+ EK
Sbjct: 1   MEKVYEELDEVKAVNEKLRIDYRNKTELLENLKKVQNEQLIEIREARLVNEKHGFEIEEK 60

Query: 61  TEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEA 120
           + EI+E+K+  E L+R L EK+S++K +   NDKLR +  +K R+ EE+ R ++  LDEA
Sbjct: 61  SREIAELKRANEELQRCLREKDSVVKRVNDVNDKLRANGEDKYREFEEEKRNMMSGLDEA 120

Query: 121 NEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENS 180
           +EKNID EQK NV++AEIEGLKGLL+ ++ K ++AE   K  K++R RDD+++K+E+E S
Sbjct: 121 SEKNIDLEQKNNVYRAEIEGLKGLLAVAETKRIEAEKTVKGMKEMRGRDDVVVKMEEEKS 180

Query: 181 KFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISG 240
           + E +LKWKKEQFKHLEEA+EKLK+ F+  KKEWE E+S LLD I SLQT LDS TRIS 
Sbjct: 181 QVEEKLKWKKEQFKHLEEAYEKLKNLFKDSKKEWEEEKSKLLDEIYSLQTKLDSVTRISE 240

Query: 241 DLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIA 300
           DLQ +LQ+CN AL+ EE+RRK+LE+QVSEF+  Y++ FAE QDA++QL+ L  +RD E+A
Sbjct: 241 DLQKKLQMCNGALTQEETRRKHLEIQVSEFKAKYEDAFAECQDARTQLDDLAGKRDWEVA 300

Query: 301 ALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRS 360
            LR +L  K+ ++KEM+Y+  KLE+EN+ELL SLKELQEA IQ +G +S+L+KL+NK R+
Sbjct: 301 ELRQTLSMKDAYFKEMKYENGKLEQENRELLGSLKELQEATIQGSG-NSALSKLKNKFRN 359

Query: 361 VEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTLQ 420
           +E +H++CSANLR+KEAEWSSQ+++M  E+N Y+ +L+ K+AALKE+++ELE+  S T +
Sbjct: 360 LENIHKNCSANLRSKEAEWSSQVEKMVEEINDYKLQLQSKEAALKEVELELENCRSSTAK 419

Query: 421 LKMQNEEISVMLLELENDQEMLEKSLRCQRHLEEQAKQIESDSER----------KLGEV 470
           +++Q EEIS+M L L   + + E   R     ++Q K    D +R          +L + 
Sbjct: 420 MRLQYEEISIMFLVL--SRTVSEAQSRLANAKDKQIK----DEKREGNCYSLLMEQLDQK 473

Query: 471 SNALDIANLELAKEREKTASLSEVVESLDHIEEQRVLMEKELQKNKEKLEEASRYQLCIE 530
           + AL  A +E+ +ERE  A L + +E LD  E Q + M+KE+++ KE +EE+SR+Q  ++
Sbjct: 474 NAALAKAQMEIKEERESVACLLKRIEMLDLFENQNIQMQKEVERFKEMVEESSRFQTQMQ 533

Query: 531 EKAKQMESDSKRKLQEATDALDIANSELA 559
           EK K+ E+D + KL +  DALD  N +L 
Sbjct: 534 EKMKEAENDYEEKLLQVCDALDNTNIDLV 562

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		950
297744853		892	unnamed protein product [Vitis vinifera]	0.894	0.952	0.544	0.0
449499874		994	PREDICTED: uncharacterized protein At4g3	0.982	0.938	0.448	0.0
224126269		1024	predicted protein [Populus trichocarpa]	0.584	0.541	0.614	1e-171
224117384		1187	predicted protein [Populus trichocarpa]	0.582	0.465	0.602	1e-170
356566189		984	PREDICTED: uncharacterized protein At4g3	0.943	0.910	0.410	1e-160
255586026		1058	ATP binding protein, putative [Ricinus c	0.538	0.483	0.560	1e-148
359496380		988	PREDICTED: uncharacterized protein At4g3	0.547	0.526	0.567	1e-139
356557587		910	PREDICTED: uncharacterized protein LOC10	0.942	0.983	0.369	1e-136
257096919		1050	RecName: Full=Uncharacterized protein At	0.581	0.525	0.507	1e-135
42567496		1513	basic helix-loop-helix domain-containing	0.587	0.368	0.511	1e-135

>gi\|297744853\|emb\|CBI38267.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/900 (54%), Positives = 626/900 (69%), Gaps = 50/900 (5%)

Query: 88  LGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSA 147
           L AANDKLR D +EK  K EE+NR  VLALDEANEKN+DQEQK++ FK EIEGLK LLS 
Sbjct: 2   LKAANDKLRVDCDEKFWKWEEENRKQVLALDEANEKNMDQEQKIHFFKEEIEGLKRLLSV 61

Query: 148 SQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQF 207
           S+KKC++AE  AKA ++LR+RDDML+K E++  + E+QLKWKKEQF HLEEAHEKL++QF
Sbjct: 62  SKKKCLEAEKNAKASEELRQRDDMLVKSEEQYRRVEDQLKWKKEQFNHLEEAHEKLRNQF 121

Query: 208 RTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQV 267
            T KKEWE E STLLD I +LQ+ LDSQTRIS  LQ +LQ+CNQAL+ EE +RKYLE+Q+
Sbjct: 122 WTSKKEWEQEISTLLDKICALQSKLDSQTRISEGLQRQLQMCNQALAQEERQRKYLEIQL 181

Query: 268 SEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLEREN 327
           SE +T ++N F+E QDAKS++E L+ QRDKEIAALR+SL TKET YKE +++A KLE+EN
Sbjct: 182 SESKTCFENVFSECQDAKSKIEHLSIQRDKEIAALRNSLSTKETIYKEADFRARKLEQEN 241

Query: 328 QELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMD 387
           Q+LL+SLKELQE +I  AG+SSSLAKLRNKL+S+E MHRDCS NLRAKEA+WSSQ +++ 
Sbjct: 242 QDLLISLKELQEERIHGAGASSSLAKLRNKLKSLEHMHRDCSENLRAKEAQWSSQQEKLT 301

Query: 388 AEMNGYRSELERKDAALKELKMELEDYHSLTLQLKMQNEEISVMLLELENDQEMLEKSL- 446
           +++N Y  ++E KDA +KEL +ELE  HS  +QLK QNEE+ +   +LE D + L+ SL 
Sbjct: 302 SDLNDYMLKIESKDADIKELGLELEGCHSSIMQLKSQNEELKLRATKLEKDNQELQTSLE 361

Query: 447 ---RCQRH----------------LEEQAKQIESDSERKLGEVSNALDIANLELAKEREK 487
                Q H                LE   +   S+   K  E S+ L+    +L+  R K
Sbjct: 362 ELQEQQIHESGVSSLEGLQNKVESLEHMHRDCSSNLRAKEAEWSSQLEKLTGDLSDYRSK 421

Query: 488 TASLSEVVESLDHIEEQRVLMEKE-----LQKNKEKLEEASRYQLCIEEKAKQMESDSKR 542
             S   V++ L         ME E     L + K   EEAS   L +    K   S+++ 
Sbjct: 422 VESKDAVIKELS--------MELEGCYSSLVQLKLHSEEASLMVLVL----KLGLSEAQL 469

Query: 543 KLQEATDALDIANSELAEKTS--------EGHQIEFELWIWKSIAERLKFELEENQELRK 594
           KL    D + + N E  E  S        +  + EFEL IWKSIA+ LK EL+EN E+RK
Sbjct: 470 KLASEKDEMALQNKEREENVSHLMNKLEMKRSETEFELQIWKSIADHLKAELQENLEMRK 529

Query: 595 ELEASLLAQVEVGEVIKQENCGLTHSLEERDSRISKFQQQILSLEQDLKLKALEAASNAR 654
            +EASLLAQ+EV E +KQE   L  +LEE+D  I  FQ+QI SL+Q++K + +  AS AR
Sbjct: 530 SIEASLLAQIEVEETLKQERDALIIALEEKDRMIDDFQRQIRSLDQEMKAREIGTASFAR 589

Query: 655 METAMSFEIEKQRFSQITKEKDEILEDLQRQIGWLEEESLRRELESSLLTQICAERSFEH 714
            E  M+FE EK+ F Q TKEKD ILE LQ +I  LE ESLRRELE S+L +I  ER+FE 
Sbjct: 590 TEAVMAFESEKEIFLQTTKEKDRILEKLQEEIERLEHESLRRELEGSMLARIVTERTFEL 649

Query: 715 EKESLIQLLEEKNQKIDDLLQLVRSLEERFNSSLNSFSSQLAGKQAEISLAIEAWEKISA 774
           EK +LIQL+EEK ++++DL +LVRSLE+ FNSS+ SFSSQL  KQAEI+L  EAWEKI+ 
Sbjct: 650 EKSNLIQLMEEKEERVEDLQKLVRSLEQNFNSSMISFSSQLVQKQAEINLVHEAWEKIAT 709

Query: 775 AETLAMLEIEEKKLMIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKN 834
           AE LA LEIEEKK+MI+ELED+I ++QQKLE QEKSLSHSK QA +IEAEL  KQ E+K 
Sbjct: 710 AEILAQLEIEEKKVMIMELEDDIHSIQQKLEFQEKSLSHSKQQALEIEAELEAKQLEVKK 769

Query: 835 LTNQLEENLTTSDALVIELRSENRKLLEDVLKLSSERENLLGFLGGLGDRVSKFSDEDMQ 894
           LT ++E N + S+ LV EL S+N+ L+E++ KLSSERENLLGF+G + D + KFS EDMQ
Sbjct: 770 LTTEMETNWSNSEGLVNELESKNKNLVEELAKLSSERENLLGFIGDMCDGIDKFSCEDMQ 829

Query: 895 LMEMLGRLVQSLDSKS-GLVLK---GDDLFESVKENVNAHPSPATMKKVNTSLEERSPFK 950
           L   L R++ + D+ S G  LK    D  F   KEN + H SP T+KK     +ERSPF+
Sbjct: 830 LTRSLERIMHTFDTYSPGNELKRRDDDTPFNPNKENFSTHLSP-TLKKFEAIPDERSPFR 888

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449499874\|ref\|XP_004160940.1\| PREDICTED: uncharacterized protein At4g38062-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224126269\|ref\|XP_002319798.1\| predicted protein [Populus trichocarpa] gi\|222858174\|gb\|EEE95721.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224117384\|ref\|XP_002317561.1\| predicted protein [Populus trichocarpa] gi\|222860626\|gb\|EEE98173.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356566189\|ref\|XP_003551317.1\| PREDICTED: uncharacterized protein At4g38062-like [Glycine max]	Back alignment and taxonomy information

>gi\|255586026\|ref\|XP_002533681.1\| ATP binding protein, putative [Ricinus communis] gi\|223526416\|gb\|EEF28697.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359496380\|ref\|XP_002265270.2\| PREDICTED: uncharacterized protein At4g38062-like, partial [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356557587\|ref\|XP_003547097.1\| PREDICTED: uncharacterized protein LOC100781062 [Glycine max]	Back alignment and taxonomy information

>gi\|257096919\|sp\|P0CB23.1\|Y4862_ARATH RecName: Full=Uncharacterized protein At4g38062	Back alignment and taxonomy information

>gi\|42567496\|ref\|NP_195520.2\| basic helix-loop-helix domain-containing protein [Arabidopsis thaliana] gi\|332661471\|gb\|AEE86871.1\| basic helix-loop-helix domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		950
ZFIN\|ZDB-GENE-050531-1		1974	myh11a "myosin, heavy polypept	0.911	0.438	0.225	2.1e-28
UNIPROTKB\|F1P3W7		1928	Gga.27660 "Uncharacterized pro	0.908	0.447	0.218	1.5e-27
UNIPROTKB\|F1P493		1935	Gga.27660 "Uncharacterized pro	0.910	0.447	0.216	1.5e-27
MGI\|MGI:1339709		1940	Myh3 "myosin, heavy polypeptid	0.898	0.440	0.230	1.5e-27
UNIPROTKB\|F1SS61		1943	MYH3 "Uncharacterized protein"	0.903	0.441	0.234	1.5e-27
UNIPROTKB\|P13538		1939	P13538 "Myosin heavy chain, sk	0.914	0.448	0.217	1.9e-27
UNIPROTKB\|F1N775		1937	MYH8 "Uncharacterized protein"	0.914	0.448	0.220	2.4e-27
UNIPROTKB\|F1NZF5		1940	Gga.27138 "Uncharacterized pro	0.908	0.444	0.221	2.4e-27
UNIPROTKB\|F1P3W8		1946	MYH2 "Uncharacterized protein"	0.905	0.441	0.219	5.1e-27
UNIPROTKB\|F1M789		1812	Myh13 "Protein Myh13" [Rattus	0.848	0.444	0.235	5.9e-27

ZFIN\|ZDB-GENE-050531-1 myh11a "myosin, heavy polypeptide 11, smooth muscle a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 357 (130.7 bits), Expect = 2.1e-28, P = 2.1e-28
 Identities = 216/959 (22%), Positives = 416/959 (43%)

Query:     1 MERIYEELD-EIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNE 59
             +E I  E++  ++ E ++  A    K ++   +K    EHL + ++A  K++ +    + 
Sbjct:   918 LEEILHEMEARLEEEEDRGAALQMEKKKMHEQIKDLE-EHLEEEEDARQKLQLEKVTCDA 976

Query:    60 KTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCR---KLEEQNRVLVLA 116
             K +++ +   + +     L ++  I++   A       +  EK +   KL+ ++  ++  
Sbjct:   977 KIKKLEDDILIMDDQNNKLQKERKILEERIADFSSNLAEEEEKSKNLTKLKNKHESMISE 1036

Query:   117 LDEANEKNIDQEQKVNVFKAEIEGLKGLLSA--SQKKCVKAESEAKAPKKLRERDDMLLK 174
             L+   +K     Q+++  K ++E     L    +  +   A+ +A+  KK  E    L +
Sbjct:  1037 LEVRLKKEEKTRQELDKAKRKLEAESNDLQEQIADLQAQIADLKAQLAKKEEELQAALAR 1096

Query:   175 LEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTL---LDAISS-LQT 230
             LEDE  +  N LK  +E   H+ +  E L+ + R  + + E  +  L   L+A+ S L+ 
Sbjct:  1097 LEDETGQKNNALKKIRELEGHISDLQEDLESE-RAARNKAEKTKRDLGEELEALKSELED 1155

Query:   231 SLDS---QTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQ 287
             +LD+   Q  +    +  + L  +A+  +ESR    E QV E R          Q     
Sbjct:  1156 TLDTTATQQELRAKREQEVTLLKRAIE-DESRVH--EAQVQEMR----------QKHTQA 1202

Query:   288 LECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKEL----QEAQIQ 343
             LE LT Q       L  S   K    K    QA  LE+E  EL + L+ L    Q+ + +
Sbjct:  1203 LEELTEQ-------LEQSKRVKVNLEKAK--QA--LEKETSELHVELRSLTQGKQDVEHK 1251

Query:   344 KAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAA 403
             K      LA L+++    E+   +    +     E  S    ++ E  G   +L  KD A
Sbjct:  1252 KKKLEGQLADLQSRFNDSERHKAELGDRVSKITVELESVTNLLN-EAEGKNIKLS-KDVA 1309

Query:   404 LKELKMELEDYHSLTLQLKMQNEEISVMLLELEND----QEMLEKSLRCQRHLEEQAKQI 459
                L  +++D   L  +   Q  ++S  L ++E+D    QE L++    +R++E     +
Sbjct:  1310 --SLSSQVQDTQELLAEETRQKLQLSTKLRQIEDDRNALQEQLDEEAEAKRNVERHVSTL 1367

Query:   460 E---SDSERKLGEVSNALDIANLELAKEREKTASLSEVVESLDHIEEQRVXXXXXXXXXX 516
                 SD ++KL E++      N+EL +E +K   L   +E+ +   E++           
Sbjct:  1368 NIQLSDFKKKLEEMTG-----NVELLEEGKKR--LQRDLEAANTQFEEKAAAYDKLEKTK 1420

Query:   517 XXXXXASRYQLCIEEKAKQMESDSKRKLQEATDALDIANSELAEK-TSEGHQIEFELWIW 575
                       L   +  +Q+ S+ ++K Q+  D +      ++ K   E  + E E    
Sbjct:  1421 NRLQQELEDTLMDLDNQRQLVSNLEKK-QKKFDQMLAEEKSISSKYADERDRAEAEAREK 1479

Query:   576 KSIAERLKFELEENQELRKELE-ASLLAQVEVGEVIK-QENCGLT-HSLEER----DSRI 628
             ++ A  L   LEE QE R+E E A+   + E+ +++  +++ G   H LE+     ++++
Sbjct:  1480 ETKALSLARALEEAQEAREEFERANKALRAEMEDLVSSKDDVGKNVHELEKSKRGLEAQV 1539

Query:   629 SKFQQQILSLEQDLKLKALEAASNARMETAMSFEIEKQRFSQITKEKDEILEDLQRQ-IG 687
              + + Q+  LE +L     +AA +A++   ++ +  K +F +  + +DE  E+ +RQ + 
Sbjct:  1540 EEMKTQLEELEDEL-----QAAEDAKLRLEVNMQALKAQFERDLQGRDEQGEEKKRQLVK 1594

Query:   688 WXXXXXXXXXXXXXXXTQICA-ERSFEHEKESLIQLLEEKNQKIDDLLQLVRSLEERXXX 746
                             T + A ++  E + + L   +E  N+  D+ ++ +R L+ +   
Sbjct:  1595 QVRELETELEDERKQRTALAASKKKLEGDLKDLEGQIETSNKGRDEAIKQLRKLQAQMKD 1654

Query:   747 XXXXXXXXXAGKQAEISLAIEAWEKISA--AETLAMLE----IEEKKLMIV----ELEDE 796
                      A ++  +S A E   K     AE L + E     E  K  +     EL DE
Sbjct:  1655 FQRELDDAHAAREEVLSSAKENERKAKTLEAELLQLQEDLAAAERAKKQVEAERDELADE 1714

Query:   797 I-SNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQLEENLTTSDALVIELRS 855
             + SN   K  L ++     + + Q++E EL  +Q  M+ L ++L ++    D L  EL++
Sbjct:  1715 LASNASGKSALSDEK-RRLEAKIQQLEEELEEEQGNMEMLNDRLRKSAQQVDQLTNELQA 1773

Query:   856 ENRKLLE-DVLKLSSEREN--LLGFLGGLGDRV-SKFSDEDMQLMEMLGRLVQSLDSKS 910
             E     + +  +   ER+N  L   L  + ++V SKF      L   + +L + L+ +S
Sbjct:  1774 ERTTSQKNESARQLMERQNKELKAKLQEMENQVKSKFKSSISALEAKVAQLEEQLEQES 1832

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030860 "regulation of polarized epithelial cell differentiation" evidence=IMP

GO:0048546 "digestive tract morphogenesis" evidence=IMP

GO:0048565 "digestive tract development" evidence=IMP

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB\|F1P3W7 Gga.27660 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P493 Gga.27660 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1339709 Myh3 "myosin, heavy polypeptide 3, skeletal muscle, embryonic" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SS61 MYH3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|P13538 P13538 "Myosin heavy chain, skeletal muscle, adult" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N775 MYH8 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NZF5 Gga.27138 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P3W8 MYH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1M789 Myh13 "Protein Myh13" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		950
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-05
COG1269		660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	7e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	0.003
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

 Score = 64.7 bits (158), Expect = 2e-10
 Identities = 128/705 (18%), Positives = 265/705 (37%), Gaps = 53/705 (7%)

Query: 182 FENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGD 241
              +L+  +E+ K  EE  E+L  + +  +++ E     L   +S L+  ++   +    
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLE----ELRLEVSELEEEIEELQKELYA 292

Query: 242 LQNRLQLCNQALSHEESRRKYLE---VQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKE 298
           L N +    Q       R   LE    ++       ++   E  +  ++LE    +  +E
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352

Query: 299 IAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQE------AQIQKAGSS-SSL 351
           + +L   L   E   +E+E +  +LE + + L   + +L+        +I++  +    L
Sbjct: 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL 412

Query: 352 AKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMEL 411
              R +L+   +          A+  E  +++++++ E+   + ELER + AL+EL+ EL
Sbjct: 413 EDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470

Query: 412 EDYHSLTLQLKMQNEEISVMLLELENDQEMLEKSLRCQRHLEEQAKQIESDSERKLGEVS 471
           E+        + +  ++   L  LE  QE LE          E  K +  +     G + 
Sbjct: 471 EEAEQALDAAERELAQLQARLDSLERLQENLEG-------FSEGVKALLKNQSGLSGILG 523

Query: 472 NALDIANLELAKEREKTASLSEVVESLDHIEEQRVLMEKELQKNKEKLEEASRYQLCIE- 530
              ++ +++   E    A+L   ++++               K  E      R       
Sbjct: 524 VLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNEL----GRVTFLPLD 579

Query: 531 -EKAKQMESDSKRKLQEATDALDIANSELAEKTSEGHQIEFELWIWKS-IAERLKFELEE 588
             K  +++ + +  L+     L +A      K     +      +    + + L    + 
Sbjct: 580 SIKGTEIQGNDREILKNIEGFLGVAKD--LVKFDPKLRKALSYLLGGVLVVDDL----DN 633

Query: 589 NQELRKELEASLLAQVEVGEVIK------QENCGLTHSLEERDSRISKFQQQILSLEQDL 642
             EL K+L          G++++        +     S+ ER   I + +++I  LE+ +
Sbjct: 634 ALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKI 693

Query: 643 KLKALEAASNARMETAMSFEIEKQRFSQITKEKDEILEDLQRQIGWLEEESLRRELESSL 702
                     A  E     E  ++   Q+ KE +E+   +      L       E     
Sbjct: 694 -----AELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748

Query: 703 LTQICAERS-FEHEKESLIQLLEEKNQKIDDLLQLVRSLEER---FNSSLNSFSSQLAGK 758
           + Q+  E +  E E E L + LEE  +++ +    +  LE +       L +    L   
Sbjct: 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL 808

Query: 759 QAEIS-LAIEAWEKISAAETLAMLEIEEKKLMIVELEDEISNVQQKLELQEKSLSHSKHQ 817
           +AE++ L  EA       E+L    I   +  + +LE++I  + + +E     +   +  
Sbjct: 809 RAELTLLNEEAANLRERLESLER-RIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867

Query: 818 AQKIEAELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLE 862
            +++E+EL     E  +L   L    +  + L  ELR    K  E
Sbjct: 868 IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		950
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	99.62
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.43
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.01
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	98.94
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	98.92
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	98.78
PRK02224		880	chromosome segregation protein; Provisional	98.77
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	98.77
PRK02224		880	chromosome segregation protein; Provisional	98.68
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	98.53
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	98.3
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	98.23
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	98.21
PRK03918		880	chromosome segregation protein; Provisional	98.11
PRK03918		880	chromosome segregation protein; Provisional	98.02
PF00038		312	Filament: Intermediate filament protein; InterPro:	97.97
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.96
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	97.59
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	97.44
PF00038		312	Filament: Intermediate filament protein; InterPro:	97.35
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.04
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	96.91
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	96.86
PRK01156		895	chromosome segregation protein; Provisional	96.86
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	96.85
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	96.78
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.76
PRK04778		569	septation ring formation regulator EzrA; Provision	96.65
PHA02562		562	46 endonuclease subunit; Provisional	96.45
PRK04863		1486	mukB cell division protein MukB; Provisional	96.36
PHA02562		562	46 endonuclease subunit; Provisional	96.25
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	95.97
PF14662		193	CCDC155: Coiled-coil region of CCDC155	95.78
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.73
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.66
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	95.56
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	95.45
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	95.21
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	94.92
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.28
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	94.27
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	94.04
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	94.0
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.9
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	93.87
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	93.82
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	93.75
PRK10869		553	recombination and repair protein; Provisional	93.08
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	92.93
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	92.81
KOG0996		1293	consensus Structural maintenance of chromosome pro	92.14
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	92.1
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	91.64
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	91.46
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	91.41
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	91.37
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	91.19
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	91.13
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	91.05
KOG0971		1243	consensus Microtubule-associated protein dynactin	90.9
KOG0933		1174	consensus Structural maintenance of chromosome pro	90.84
PF05769		181	DUF837: Protein of unknown function (DUF837); Inte	89.94
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	89.53
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	88.99
PRK01156		895	chromosome segregation protein; Provisional	88.53
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	88.49
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	88.37
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	88.33
PRK09039		343	hypothetical protein; Validated	87.92
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	86.93
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	86.74
PF15290		305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	86.12
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	85.79
PF10212		518	TTKRSYEDQ: Predicted coiled-coil domain-containing	85.41
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	84.06
PRK09039		343	hypothetical protein; Validated	83.71
KOG0971		1243	consensus Microtubule-associated protein dynactin	83.6
KOG0962		1294	consensus DNA repair protein RAD50, ABC-type ATPas	82.96
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	81.75
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	80.89

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

Probab=99.62  E-value=1.9e-07  Score=119.21  Aligned_cols=543  Identities=22%  Similarity=0.258  Sum_probs=306.4

Q ss_pred             hhHHHHHHHHHHHHhhh----hhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHH
Q 040943           62 EEISEVKQLFEGLKRSL----TEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAE  137 (950)
Q Consensus        62 eEi~~~k~~~e~L~~~L----~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~e  137 (950)
                      +++..++...+++...+    .+|.....++....+.+-. |++.+.++-.+++.+=.++.+.....+..+.+++....-
T Consensus       936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~-~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~ 1014 (1930)
T KOG0161|consen  936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS-LDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKA 1014 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555543    3566666667766776665 777887777777776666666555555555555555555


Q ss_pred             HhhhhhhhhhhhhHhhhhhhhhhcchhhhhh-hHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q 040943          138 IEGLKGLLSASQKKCVKAESEAKAPKKLRER-DDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEH  216 (950)
Q Consensus       138 i~~lk~~ls~~ekkc~eaek~a~a~ke~~~r-ddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~  216 (950)
                      .+++...+..-+.              ...+ .-....+|-..+++++.|+=.+++-.-+..--.++..++  .+++|  
T Consensus      1015 ~~kle~~l~~le~--------------~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l--~kke~-- 1076 (1930)
T KOG0161|consen 1015 KAKLEQQLDDLEV--------------TLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQL--KKKES-- 1076 (1930)
T ss_pred             HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HHHHH--
Confidence            5555544443322              2221 123355667777888888766666555444444444442  33444  


Q ss_pred             hHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHH---hHHHHHhhh
Q 040943          217 ERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDA---KSQLECLTN  293 (950)
Q Consensus       217 ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ea---rs~ie~Lt~  293 (950)
                      |.+.+.-.+.-++.-+---++...+|+.|+.-=.+-|..|...|.-+|-..+++.+.|..+-.++++.   -.....++.
T Consensus      1077 El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~ 1156 (1930)
T KOG0161|consen 1077 ELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNK 1156 (1930)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34444444444444444455566777777777777888888888899999999999999999999887   445567889


Q ss_pred             hchhHHHHHHhhhhhhhH----HHHHH--------HHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHH
Q 040943          294 QRDKEIAALRHSLGTKET----FYKEM--------EYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSV  361 (950)
Q Consensus       294 ~rd~eIa~LR~sL~~Ket----~~kE~--------ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~L  361 (950)
                      +|+-|++.||..|.+...    ...++        .+--+-+++.-+.=....|+.+..|...++-..-+..+-      
T Consensus      1157 k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~------ 1230 (1930)
T KOG0161|consen 1157 KREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLS------ 1230 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence            999999999988865432    22222        222222333333333333444443333222111111110      


Q ss_pred             HHhhHHHHHhhhhhHH---HHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhH
Q 040943          362 EQMHRDCSANLRAKEA---EWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTLQLKMQNEEISVMLLELEND  438 (950)
Q Consensus       362 Eq~Hr~Cs~~LraKEa---EW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~c~s~~~Ql~~qNeE~s~mllvl~k~  438 (950)
                       .--.++...-|.-|+   +-...+.+++..++++-.+..-.-..+.++...|+.....+.++   +...+.+-.-++.+
T Consensus      1231 -~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~---~r~~~~~~~qle~~ 1306 (1930)
T KOG0161|consen 1231 -SEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSAL---SRDKQALESQLEEL 1306 (1930)
T ss_pred             -hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence             000011111122221   11111222222222222222222222222222222211111111   22222333344456


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhhhH---HHHHhhhhhHHH-------HhHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHH
Q 040943          439 QEMLEKSLRCQRHLEEQAKQIESDS---ERKLGEVSNALD-------IANLELAKEREKTASLSEVVESLDHIEEQRVLM  508 (950)
Q Consensus       439 ~E~le~S~r~Ql~lqeq~~q~E~~~---~eqLee~~~aL~-------~aqaelaeerEkvAsL~rriEsld~~Eeq~~lM  508 (950)
                      +.-++.-+|....+.....+.+++.   .+++++--.+..       .++++.++-+-+...+..+  .++-+++.+..+
T Consensus      1307 k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~--~~eelee~kk~l 1384 (1930)
T KOG0161|consen 1307 KRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQ--RLEELEELKKKL 1384 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            7777788888888888888888765   566666555443       4555555544444333222  244556777788


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhHHHHHHHHhHHhhhhHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 040943          509 EKELQKNKEKLEEASRYQLCIEEKAKQMESDSKRKLQEATDALDIANSELAEKTSEGHQIEFELWIWKSIAERLKFELEE  588 (950)
Q Consensus       509 QkELd~yKEMLEeSSr~Ql~Lkeq~lq~E~dlKekL~e~~daLD~AnsELaek~~E~s~~Efel~~wKs~~e~LK~~leE  588 (950)
                      +..+..+.+.++.++..-.-|+.--    +.++-.+..+..++++..+..+.---...+++--|--||...+.|-..++.
T Consensus      1385 ~~~lq~~qe~~e~~~~~~~~Lek~k----~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~ 1460 (1930)
T KOG0161|consen 1385 QQRLQELEEQIEAANAKNASLEKAK----NRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDA 1460 (1930)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999998876666554433    234444677777787776555554445666788899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 040943          589 NQELRKELEASLLAQVEVGEVIKQENCGLTHSLEERDSRISKFQQQILSLE  639 (950)
Q Consensus       589 n~~lrreleaSLLaqvE~ee~lkqEke~L~~~LeE~~~~i~~lq~qi~~lE  639 (950)
                      .+.--|.+++.++.-...-+.+..+.+.+...-+.....|.++-.++..++
T Consensus      1461 aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~ 1511 (1930)
T KOG0161|consen 1461 AQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGG 1511 (1930)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888877666666555554444444433444444444444333

>TIGR00606 rad50 rad50	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PRK10869 recombination and repair protein; Provisional	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		950
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	9e-14
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-13
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-12
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	9e-12
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-10
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-09
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-09
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-07
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-07
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	4e-06
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-04
3ghg_C		411	Fibrinogen gamma chain; triple-stranded coiled coi	4e-04
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-04
1w1w_A		430	Structural maintenance of chromosome 1; cohesin, c	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 93.4 bits (231), Expect = 2e-19
 Identities = 106/648 (16%), Positives = 215/648 (33%), Gaps = 152/648 (23%)

Query: 1   MERIYEELDEIKAENEKLRADCKSKSELCGN-LKKAHNEHLLKIQEANLKVEKQARELNE 59
            +  Y+++  +  +      DCK   ++  + L K   +H++  ++A     +    L  
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 60  KTEEISEVKQLFEGLKRS----LTEK---ESIIKCLGAAN-----DKLRFDFNEKCRKLE 107
           K EE+  V++  E + R     L      E     +         D+L  D N+   K  
Sbjct: 74  KQEEM--VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQVFAKYN 130

Query: 108 EQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAES------EAKA 161
                  L L +A    +   + V +      G+ G    S K  V  +       + K 
Sbjct: 131 VSRLQPYLKLRQA-LLELRPAKNVLID-----GVLG----SGKTWVALDVCLSYKVQCKM 180

Query: 162 P--------KKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKE 213
                    K     + +L  L+    + +     + +   +++     ++ + R   K 
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 214 WEHERSTL-LDAISS-------------LQTSLDSQ--TRISGDLQNRLQL--CNQALSH 255
             +E   L L  + +             L T+   Q    +S      + L   +  L+ 
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 256 EESRR---KYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTN-QRDKEIAA-LRHSLGTKE 310
           +E +    KYL+ +               QD   ++   TN +R   IA  +R  L T +
Sbjct: 301 DEVKSLLLKYLDCRP--------------QDLPREV-LTTNPRRLSIIAESIRDGLATWD 345

Query: 311 TFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCS- 369
             +K +     KL    +    SL  L+ A+ +                   +M    S 
Sbjct: 346 -NWKHVNCD--KLTTIIE---SSLNVLEPAEYR-------------------KMFDRLSV 380

Query: 370 ----ANLRAK--EAEWSSQMQQMDAE--MNGYRSELERKDAALKELKMELEDYHSLTLQL 421
               A++        W   + + D    +N    +L +     K+ K       S+ L+L
Sbjct: 381 FPPSAHIPTILLSLIWF-DVIKSDVMVVVN----KLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 422 KMQNEEISVM---LLELENDQEMLEK---SLRCQ---------RHLEEQAKQIESDSE-R 465
           K++ E    +   +++  N  +  +                   HL +  +  E  +  R
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL-KNIEHPERMTLFR 494

Query: 466 KLGEVSNALDIANLELAKEREKTASLSEVVESLDHIEEQRVLMEKELQKNKEKLEEASRY 525
            +      LD   LE  K R  + + +     L+ +++ +   +  +  N  K E   R 
Sbjct: 495 MV-----FLDFRFLE-QKIRHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYE---RL 544

Query: 526 QLCIEEKAKQMESDSKRKLQEATDALDIA----NSELAEKTSEGHQIE 569
              I +   ++E +      + TD L IA    +  + E+  +  Q++
Sbjct: 545 VNAILDFLPKIEENLIC--SKYTDLLRIALMAEDEAIFEEAHK--QVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		950
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	97.97
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	97.83
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.09
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	90.8
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	90.67
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	90.21
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	86.27
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	86.27
2v66_B		111	Nuclear distribution protein NUDE-like 1; structur	81.65

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

Probab=97.97  E-value=0.014  Score=56.06  Aligned_cols=59  Identities=12%  Similarity=0.138  Sum_probs=31.6

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 040943            1 MERIYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNE   59 (950)
Q Consensus         1 Me~v~eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~   59 (950)
                      |+.+-+.|.-++.+++.+...+..-..-+..+.......-..+..+...+..+...+..
T Consensus         1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (284)
T 1c1g_A            1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDK   59 (284)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666677777777766666665555555555544444444444444444444333333

PyMOL of 1c1g

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00