Citrus Sinensis ID: 040951

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-
ARLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRFESFVPVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRAIQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY
ccHHHHHHHHHHccccHHHHHHHHHHccccccHHHHcccccccccHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHcc
ccHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHccccccccccHHHHHHHcHcccccHHHHHHHHcccccEEEEccccccccccccccccHHHHHHHHHHHHHcEHHccccccccccEEccccccccHHcccccccccHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccEEEEEc
ARLEEEiknyryknptiREEFVDLKGKLTTVKAkeweripeigdysrsnkrkrfesfvpvpdsLLQKARQEQQHVialdpssraaggaesVVTDltavgegrgKILTLKldgisdsvtgLTVVDLSGyltrmndlkittnSELRDILKARKIVRAIQAARLEELAKEEAAARKLITKgcnmcpkneDVWLEACRlarpdeakgvvakgvrqiPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKekwlagdvPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERelgnnaeergFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYqsgcnqcpncipLWYSLANLEEKRNGLNGLSKARAVLSVARlknplnpeIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKmvphhdrkskgkdalvksdrdpHVFAAVAKLFWHDRKVDKARNWFNkavsldpdtgdfwalyy
arleeeiknyryknptireefvdlkgklttvkakeweripeigdysrsnkrkrFESFVPVPDSLLQKARQEQQHVIALdpssraaggaESVVtdltavgegrgkiltlkldgisdsvtgLTVVDLsgyltrmndlkittnselrDILKARKIVRAIQAARLEELAKEEAAARKLItkgcnmcpkNEDVWLEACRLArpdeakgvvakgvrqiPKSVRLWLQAAeldhdkanksRVLRMAldeipdsvRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVlnkarkklpkERAIWIAAAkleeangntsmVGKIIERgiralqgeevvidrdTWMKEAEIaekagsdaeeckKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAkardmggtervWMKSAiverelgnnaeERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVarlknplnpeIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKdalvksdrdPHVFAAVAKLFWHDRKVDKARNWFnkavsldpdtGDFWALYY
ARLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRFESFVPVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRAIQaarleelakeeaaarklITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY
*********YRYKNPTIREEFVDLKGKLTTVKAKEWERIPEI************************************************VVTDLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRAIQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEA******************IETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA***********SFIAKALQKCPNSGILWAELIKMVP******************PHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALY*
**L**E*************EFVDLKGKLTTVKAKEWERIPEIGDYS**N**KRFESFVPVPDSLLQ***************************DLTAVGEGRGKILT***************VDLSGYLTRMNDLKITTNSELRDILKARKIVRAIQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY
ARLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRFESFVPVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRAIQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEI*************RGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAE*********DSFIAKALQKCPNSGILWAELIKMVP*************KSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY
ARLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRFESFVPVPDSLLQKARQEQQHVIALDP********ESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRAIQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY
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ARLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRFESFVPVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRAIQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKxxxxxxxxxxxxxxxxxxxxxGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query701 2.2.26 [Sep-21-2011]
Q2KJJ0941 Pre-mRNA-processing facto yes no 0.982 0.732 0.484 0.0
Q91YR7941 Pre-mRNA-processing facto yes no 0.982 0.732 0.482 0.0
A1A5S1941 Pre-mRNA-processing facto yes no 0.982 0.732 0.482 0.0
O94906941 Pre-mRNA-processing facto yes no 0.982 0.732 0.479 0.0
Q5RCC2941 Pre-mRNA-processing facto yes no 0.982 0.732 0.474 0.0
Q12381906 Pre-mRNA-splicing factor yes no 0.978 0.757 0.407 1e-150
P19735899 Pre-mRNA-splicing factor yes no 0.940 0.733 0.266 2e-62
Q7SGD2 695 Pre-mRNA-splicing factor N/A no 0.362 0.365 0.219 9e-11
Q5K654 677 Pre-mRNA-splicing factor N/A no 0.362 0.375 0.230 2e-10
Q5BDX1673 Pre-mRNA-splicing factor no no 0.566 0.589 0.246 8e-10
>sp|Q2KJJ0|PRP6_BOVIN Pre-mRNA-processing factor 6 OS=Bos taurus GN=PRPF6 PE=2 SV=1 Back     alignment and function desciption
 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/755 (48%), Positives = 480/755 (63%), Gaps = 66/755 (8%)

Query: 10  YRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRK-RFESFVPVPDSLLQKA 68
           YR + P I+++F DLK KL  V  +EW  IPE+GD     +R  R+E   PVPDS   K 
Sbjct: 131 YRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFAKH 190

Query: 69  RQEQQHVIALDPSSRAAGGAESVVT-----------------------DLTAVGEGRGKI 105
            Q  ++  ++DP     GG  +                          D+  +G+ R  +
Sbjct: 191 LQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMRKIGQARNTL 250

Query: 106 LTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRAIQ-------- 157
           + ++L  +SDSV+G TVVD  GYLT +N +  T   ++ DI KAR ++++++        
Sbjct: 251 MDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPP 310

Query: 158 ----AARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIP 213
               +ARLEE+  +   AR LI KG  MCPK+EDVWLEA RL   D AK VVA+ VR +P
Sbjct: 311 AWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLP 370

Query: 214 KSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECC 273
           +SVR++++AAEL+ D   K RVLR AL+ +P+SVRLWKA VE+   E+ARI+L RAVECC
Sbjct: 371 QSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECC 430

Query: 274 PLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERG 333
           P  VELWLALARLETY  AR VLNKAR+ +P +R IWI AAKLEEANGNT MV KII+R 
Sbjct: 431 PTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRA 490

Query: 334 IRALQGEEVVIDRDTWMKEAEIAEKAGS---------------------------DAEEC 366
           I +L+   V I+R+ W+++AE  +KAGS                           DA+ C
Sbjct: 491 ITSLRANGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSC 550

Query: 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVL 426
               ++E ARAI+++A  VF +KKS+WL+AA  EK HG+RESL ALL++AV + P+AEVL
Sbjct: 551 VAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVL 610

Query: 427 WLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARD 486
           WLMGAK KWLAGDVPAAR IL  A+   PNSEEIWLAA KLE EN E ERAR LLAKAR 
Sbjct: 611 WLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARS 670

Query: 487 MGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKE 546
              T RV+MKS  +E  LGN    +   EE LK +  F  LW+M GQ+EE+   +++A+E
Sbjct: 671 SAPTARVFMKSVKLEWVLGNLVAAQELCEEALKHYEDFPKLWMMKGQIEEQEELVEKARE 730

Query: 547 AYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAE 606
           AY  G  +CP+  PLW  L+ LEEK   +  L++ARA+L  +RLKNP NP +WL ++R E
Sbjct: 731 AYNQGLKKCPHSTPLWLLLSRLEEK---VGQLTRARAILEKSRLKNPKNPGLWLESVRLE 787

Query: 607 SKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAV 666
            + G K  A + +AKALQ+CPNSG+LW+E I +     RK+K  DAL K + DPHV  AV
Sbjct: 788 YRAGLKNIASTLMAKALQECPNSGVLWSEAIFLEARPQRKTKSVDALKKCEHDPHVLLAV 847

Query: 667 AKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
           AKLFW +RK+ KAR WF++ V +D D GD WA +Y
Sbjct: 848 AKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFY 882
Involved in pre-mRNA splicing. May act in the tri-snRNP complex as a bridging factor between U5 and U4/U6 snRNPs in the late step of spliceosome assembly (By similarity). May be necessary for tri-snRNP formation (By similarity). Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but does not affect estrogen-induced transactivation.
Bos taurus (taxid: 9913)
>sp|Q91YR7|PRP6_MOUSE Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=2 SV=1 Back     alignment and function description
>sp|A1A5S1|PRP6_RAT Pre-mRNA-processing factor 6 OS=Rattus norvegicus GN=Prpf6 PE=2 SV=1 Back     alignment and function description
>sp|O94906|PRP6_HUMAN Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1 Back     alignment and function description
>sp|Q5RCC2|PRP6_PONAB Pre-mRNA-processing factor 6 OS=Pongo abelii GN=PRPF6 PE=2 SV=1 Back     alignment and function description
>sp|Q12381|PRP1_SCHPO Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp1 PE=1 SV=1 Back     alignment and function description
>sp|P19735|PRP6_YEAST Pre-mRNA-splicing factor 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP6 PE=1 SV=1 Back     alignment and function description
>sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=clf-1 PE=3 SV=1 Back     alignment and function description
>sp|Q5K654|CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis GN=CLF1 PE=3 SV=1 Back     alignment and function description
>sp|Q5BDX1|CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query701
255553813 1031 pre-mRNA splicing factor, putative [Rici 0.995 0.677 0.716 0.0
449445509 1023 PREDICTED: pre-mRNA-processing factor 6- 0.995 0.682 0.715 0.0
374095607 1023 putative pre-mRNA splicing factor [Camel 0.995 0.682 0.714 0.0
225446942 1023 PREDICTED: pre-mRNA-processing factor 6- 0.995 0.682 0.706 0.0
147774593 1023 hypothetical protein VITISV_024588 [Viti 0.995 0.682 0.704 0.0
224124556 820 predicted protein [Populus trichocarpa] 0.995 0.851 0.694 0.0
375174966 955 Prp1 protein [Hordeum vulgare subsp. vul 0.995 0.730 0.680 0.0
326526657 955 predicted protein [Hordeum vulgare subsp 0.995 0.730 0.680 0.0
242083614 963 hypothetical protein SORBIDRAFT_08g01667 0.995 0.724 0.681 0.0
414878219 962 TPA: hypothetical protein ZEAMMB73_41594 0.995 0.725 0.681 0.0
>gi|255553813|ref|XP_002517947.1| pre-mRNA splicing factor, putative [Ricinus communis] gi|223542929|gb|EEF44465.1| pre-mRNA splicing factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1058 bits (2736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/745 (71%), Positives = 605/745 (81%), Gaps = 47/745 (6%)

Query: 1   ARLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRFESFVPV 60
           ARL+EEI+ YR  NP I E+F DLK KL T+ A+EWE IP+IGDYS  NK+KRFESFVPV
Sbjct: 223 ARLKEEIEKYRASNPKITEQFADLKRKLHTLSAEEWESIPDIGDYSLRNKKKRFESFVPV 282

Query: 61  PDSLLQKARQEQQHVIALDPSSRAAGGAESV-----VTDLTAVGEGRGKILTLKLDGISD 115
           PD+LL+KARQEQ+HV ALDP SRAAGGAE+      VTDLTAVGEGRG +L+LKLD +SD
Sbjct: 283 PDTLLEKARQEQEHVTALDPKSRAAGGAETPWSQTPVTDLTAVGEGRGTVLSLKLDRLSD 342

Query: 116 SVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRA------------IQAARLEE 163
           SV+GLTVVD  GYLT +  +KIT+++E+ DI KAR ++++            I AARLEE
Sbjct: 343 SVSGLTVVDPKGYLTDLKSMKITSDAEISDIKKARLLLKSVTQTNPKHPPGWIAAARLEE 402

Query: 164 LAKEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAA 223
           +A +  AAR+LI +GC  CPKNEDVW+EACRLA PDEAK V+AKGV+ IP SV+LWLQAA
Sbjct: 403 VAGKIQAARQLIQRGCEECPKNEDVWIEACRLASPDEAKAVIAKGVKCIPNSVKLWLQAA 462

Query: 224 ELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLAL 283
           +L+HD  NKSRVLR  L+ IPDSVRLWKA+VE+++EE+AR LLHRAVECCPL VELWLAL
Sbjct: 463 KLEHDDVNKSRVLRKGLEHIPDSVRLWKAVVELANEEDARTLLHRAVECCPLHVELWLAL 522

Query: 284 ARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVV 343
           ARLETY  A+ VLN+AR+KLPKE AIWI AAKLEEANGNTS VGKIIERGIRALQ E +V
Sbjct: 523 ARLETYDSAKKVLNRAREKLPKEPAIWITAAKLEEANGNTSTVGKIIERGIRALQREGLV 582

Query: 344 IDRDTWMKEAEIAEKAGS---------------------------DAEECKKRGSIETAR 376
           IDR+ WMKEAE AE+AGS                           DAEECKKRGSIETAR
Sbjct: 583 IDREAWMKEAEAAERAGSVVTCQAIIKNTIGIGVEEEDRKRTWVADAEECKKRGSIETAR 642

Query: 377 AIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWL 436
           AI++HA TVFLTKKSIWLKAAQLEK+HG+RESL ALLRKAVTY PQAEVLWLMGAKEKWL
Sbjct: 643 AIYAHALTVFLTKKSIWLKAAQLEKSHGTRESLDALLRKAVTYRPQAEVLWLMGAKEKWL 702

Query: 437 AGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMK 496
           AGDVPAAR ILQEAYA IPNSEEIWLAAFKLEFEN E ERARMLLAKAR+ GGTERVWMK
Sbjct: 703 AGDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENHEPERARMLLAKARERGGTERVWMK 762

Query: 497 SAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCP 556
           SAIVERELGN  EER  ++EGLKRFPSFF LWLMLGQLEER+ HL +AKE Y+SG   CP
Sbjct: 763 SAIVERELGNTEEERRLLDEGLKRFPSFFKLWLMLGQLEERIFHLDKAKEVYESGLKHCP 822

Query: 557 NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEAD 616
           +CIPLW SLANLEEK   +NGLSKARAVL++AR KNP NPE+WLA +RAES+HGNKKE+D
Sbjct: 823 SCIPLWLSLANLEEK---MNGLSKARAVLTMARKKNPQNPELWLAAVRAESRHGNKKESD 879

Query: 617 SFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKV 676
             +AKALQ+CPNSGILWA  I+MVP   RK+K  DAL K D DPHV AAVAKLFWHDRKV
Sbjct: 880 ILMAKALQECPNSGILWAASIEMVPRPQRKTKSMDALKKCDHDPHVIAAVAKLFWHDRKV 939

Query: 677 DKARNWFNKAVSLDPDTGDFWALYY 701
           DKAR W N+AV+L PD GDFWALYY
Sbjct: 940 DKARTWLNRAVTLAPDIGDFWALYY 964

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449445509|ref|XP_004140515.1| PREDICTED: pre-mRNA-processing factor 6-like [Cucumis sativus] gi|449514699|ref|XP_004164455.1| PREDICTED: pre-mRNA-processing factor 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|374095607|gb|AEY85031.1| putative pre-mRNA splicing factor [Camellia sinensis] Back     alignment and taxonomy information
>gi|225446942|ref|XP_002267416.1| PREDICTED: pre-mRNA-processing factor 6-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147774593|emb|CAN65423.1| hypothetical protein VITISV_024588 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224124556|ref|XP_002319361.1| predicted protein [Populus trichocarpa] gi|222857737|gb|EEE95284.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|375174966|gb|AEO72346.2| Prp1 protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|326526657|dbj|BAK00717.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|242083614|ref|XP_002442232.1| hypothetical protein SORBIDRAFT_08g016670 [Sorghum bicolor] gi|241942925|gb|EES16070.1| hypothetical protein SORBIDRAFT_08g016670 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|414878219|tpg|DAA55350.1| TPA: hypothetical protein ZEAMMB73_415949 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query701
TAIR|locus:21287511029 EMB2770 "EMBRYO DEFECTIVE 2770 0.727 0.495 0.565 3.6e-198
UNIPROTKB|F1N9U0945 PRPF6 "Uncharacterized protein 0.716 0.531 0.450 1.7e-126
UNIPROTKB|E2RPW8941 PRPF6 "Uncharacterized protein 0.716 0.533 0.447 4.4e-126
MGI|MGI:1922946941 Prpf6 "PRP6 pre-mRNA splicing 0.714 0.532 0.450 5.6e-126
UNIPROTKB|Q2KJJ0941 PRPF6 "Pre-mRNA-processing fac 0.716 0.533 0.447 7.1e-126
RGD|1307103941 Prpf6 "PRP6 pre-mRNA processin 0.714 0.532 0.450 7.1e-126
ZFIN|ZDB-GENE-030131-2575944 prpf6 "PRP6 pre-mRNA processin 0.714 0.530 0.448 1e-124
UNIPROTKB|O94906941 PRPF6 "Pre-mRNA-processing fac 0.716 0.533 0.441 4.5e-124
FB|FBgn0036828931 CG6841 [Drosophila melanogaste 0.726 0.546 0.435 1.6e-104
ASPGD|ASPL0000068414941 AN7447 [Emericella nidulans (t 0.717 0.534 0.397 2.2e-96
TAIR|locus:2128751 EMB2770 "EMBRYO DEFECTIVE 2770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1468 (521.8 bits), Expect = 3.6e-198, Sum P(2) = 3.6e-198
 Identities = 308/545 (56%), Positives = 382/545 (70%)

Query:   175 ITKGCNMCPKNEDVWLEACRLARPDEAKG-VVAKGVRQIPKSVRLWLQAAELDHDKANKS 233
             I KG  + P +  +WLEA +L    E K  V+ KG+  IP SVRLW    EL +++  + 
Sbjct:   440 IAKGVKLIPNSVKLWLEAAKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVELANEEDARI 499

Query:   234 RVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLE------ 287
              +L  A++  P  + LW AL  + +  E++ +L++A E  P +  +W+  A+LE      
Sbjct:   500 -LLHRAVECCPLHLELWVALARLETYAESKKVLNKAREKLPKEPAIWITAAKLEEANGKL 558

Query:   288 -----TYGVARSVLNKARKKLPKERAI-----WIAAAKLEEANGNTSMVGKIIERGIRAL 337
                     +   ++++  K L +E  +     W++ A+  E  G+ +    II+  I   
Sbjct:   559 DEANDNTAMVGKIIDRGIKTLQREGVVIDRENWMSEAEACERVGSVATCQAIIKNTIGIG 618

Query:   338 QGEEVVIDRD-TWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKA 396
               EE   DR  TW+          +DA+ECKKRGSIETARAI++HA +VFLTKKSIWLKA
Sbjct:   619 VEEE---DRKRTWV----------ADADECKKRGSIETARAIYAHALSVFLTKKSIWLKA 665

Query:   397 AQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN 456
             AQLEK+HGSRESL ALLRKAVTY PQAEVLWLMGAKEKWLAGDVPAAR ILQEAYA IPN
Sbjct:   666 AQLEKSHGSRESLDALLRKAVTYVPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPN 725

Query:   457 SEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEE 516
             SEEIWLAAFKLEFEN+E ERARMLLAKAR+ GGTERVWMKSAIVERELGN  EER  + E
Sbjct:   726 SEEIWLAAFKLEFENKEPERARMLLAKARERGGTERVWMKSAIVERELGNVEEERRLLNE 785

Query:   517 GLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLN 576
             GLK+FP+FF LWLMLGQLEER  HL++A++AY +G   CP+CIPLW SLA+LEEK NGLN
Sbjct:   786 GLKQFPTFFKLWLMLGQLEERFKHLEQARKAYDTGLKHCPHCIPLWLSLADLEEKVNGLN 845

Query:   577 GLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAEL 636
                KARA+L+ AR KNP   E+WLA IRAE +H NK+EA+  ++KALQ CP SGILWA  
Sbjct:   846 ---KARAILTTARKKNPGGAELWLAAIRAELRHDNKREAEHLMSKALQDCPKSGILWAAD 902

Query:   637 IKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDF 696
             I+M P   RK+K  DA+ K DRDPHV  AVAKLFW D+KV+KAR WF +AV++ PD GDF
Sbjct:   903 IEMAPRPRRKTKSIDAMKKCDRDPHVTIAVAKLFWQDKKVEKARAWFERAVTVGPDIGDF 962

Query:   697 WALYY 701
             WAL+Y
Sbjct:   963 WALFY 967
GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0006396 "RNA processing" evidence=IEA
GO:0009409 "response to cold" evidence=IMP
UNIPROTKB|F1N9U0 PRPF6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPW8 PRPF6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1922946 Prpf6 "PRP6 pre-mRNA splicing factor 6 homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJJ0 PRPF6 "Pre-mRNA-processing factor 6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1307103 Prpf6 "PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2575 prpf6 "PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O94906 PRPF6 "Pre-mRNA-processing factor 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0036828 CG6841 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000068414 AN7447 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query701
pfam06424131 pfam06424, PRP1_N, PRP1 splicing factor, N-termina 1e-11
COG4783484 COG4783, COG4783, Putative Zn-dependent protease, 1e-08
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 2e-06
COG4783484 COG4783, COG4783, Putative Zn-dependent protease, 9e-05
COG5191 435 COG5191, COG5191, Uncharacterized conserved protei 6e-04
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 0.002
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 0.002
TIGR02917899 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system 0.002
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal Back     alignment and domain information 
 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 24/47 (51%), Positives = 33/47 (70%)

Query: 1   ARLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSR 47
            + +EEI+ YR +NP I+++F DLK  L TV   EW  IPE+GDY+R
Sbjct: 84  QKEKEEIEKYREENPKIQQQFADLKRNLATVTEDEWANIPEVGDYTR 130

This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression. Length = 131
>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>gnl|CDD|227518 COG5191, COG5191, Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 701
KOG0495913 consensus HAT repeat protein [RNA processing and m 100.0
KOG0495913 consensus HAT repeat protein [RNA processing and m 100.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
KOG1915677 consensus Cell cycle control protein (crooked neck 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 100.0
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 100.0
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 100.0
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 100.0
KOG1915677 consensus Cell cycle control protein (crooked neck 100.0
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 100.0
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 100.0
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 100.0
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 100.0
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 100.0
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.97
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.97
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.97
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.97
KOG2047 835 consensus mRNA splicing factor [RNA processing and 99.96
KOG0547606 consensus Translocase of outer mitochondrial membr 99.95
KOG0547606 consensus Translocase of outer mitochondrial membr 99.95
PLN03077 857 Protein ECB2; Provisional 99.94
PLN03077 857 Protein ECB2; Provisional 99.93
KOG2047 835 consensus mRNA splicing factor [RNA processing and 99.93
PRK14574 822 hmsH outer membrane protein; Provisional 99.93
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.93
PRK11788389 tetratricopeptide repeat protein; Provisional 99.93
KOG1126638 consensus DNA-binding cell division cycle control 99.92
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.92
KOG2076895 consensus RNA polymerase III transcription factor 99.92
PRK14574 822 hmsH outer membrane protein; Provisional 99.92
PRK11788389 tetratricopeptide repeat protein; Provisional 99.92
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 99.91
KOG1126638 consensus DNA-binding cell division cycle control 99.91
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.91
PLN03218 1060 maturation of RBCL 1; Provisional 99.9
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.9
PLN03218 1060 maturation of RBCL 1; Provisional 99.9
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 99.9
KOG2076 895 consensus RNA polymerase III transcription factor 99.89
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.88
KOG2003840 consensus TPR repeat-containing protein [General f 99.88
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.88
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.88
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.87
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 99.87
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.86
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.85
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.85
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.85
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.85
KOG0624 504 consensus dsRNA-activated protein kinase inhibitor 99.85
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 99.84
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.83
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.83
KOG2003840 consensus TPR repeat-containing protein [General f 99.83
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.82
PRK12370553 invasion protein regulator; Provisional 99.82
PF06424133 PRP1_N: PRP1 splicing factor, N-terminal; InterPro 99.82
PRK12370553 invasion protein regulator; Provisional 99.81
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.81
KOG1914656 consensus mRNA cleavage and polyadenylation factor 99.79
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.79
PRK11189296 lipoprotein NlpI; Provisional 99.79
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.78
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.78
PRK11189296 lipoprotein NlpI; Provisional 99.77
KOG1125579 consensus TPR repeat-containing protein [General f 99.77
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.77
KOG1129478 consensus TPR repeat-containing protein [General f 99.77
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.77
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.76
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.76
KOG1129478 consensus TPR repeat-containing protein [General f 99.74
KOG1125579 consensus TPR repeat-containing protein [General f 99.74
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.72
KOG1914656 consensus mRNA cleavage and polyadenylation factor 99.7
PLN02789320 farnesyltranstransferase 99.69
PLN02789320 farnesyltranstransferase 99.68
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.68
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.67
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 99.67
KOG2376652 consensus Signal recognition particle, subunit Srp 99.64
KOG1258577 consensus mRNA processing protein [RNA processing 99.64
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.63
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.61
KOG2376652 consensus Signal recognition particle, subunit Srp 99.61
KOG3785557 consensus Uncharacterized conserved protein [Funct 99.59
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.59
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.58
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.58
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.55
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.54
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.52
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.51
KOG3060289 consensus Uncharacterized conserved protein [Funct 99.51
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.5
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.5
KOG3060289 consensus Uncharacterized conserved protein [Funct 99.49
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.48
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 99.46
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 99.45
KOG1258577 consensus mRNA processing protein [RNA processing 99.45
PRK15359144 type III secretion system chaperone protein SscB; 99.44
PRK10370198 formate-dependent nitrite reductase complex subuni 99.43
PRK10370198 formate-dependent nitrite reductase complex subuni 99.43
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 99.42
PRK15359144 type III secretion system chaperone protein SscB; 99.42
PRK14720 906 transcript cleavage factor/unknown domain fusion p 99.4
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.4
KOG1128777 consensus Uncharacterized conserved protein, conta 99.37
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.36
PRK14720 906 transcript cleavage factor/unknown domain fusion p 99.36
KOG4340459 consensus Uncharacterized conserved protein [Funct 99.35
PRK04841 903 transcriptional regulator MalT; Provisional 99.35
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.32
KOG1128777 consensus Uncharacterized conserved protein, conta 99.31
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.31
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.3
KOG3785557 consensus Uncharacterized conserved protein [Funct 99.29
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.27
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 99.23
PRK04841903 transcriptional regulator MalT; Provisional 99.23
COG4783484 Putative Zn-dependent protease, contains TPR repea 99.19
COG4783484 Putative Zn-dependent protease, contains TPR repea 99.19
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 99.17
KOG0553304 consensus TPR repeat-containing protein [General f 99.1
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.05
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 99.04
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.04
COG3898531 Uncharacterized membrane-bound protein [Function u 99.03
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 99.02
COG3898531 Uncharacterized membrane-bound protein [Function u 99.01
KOG4340 459 consensus Uncharacterized conserved protein [Funct 98.99
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 98.98
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 98.98
KOG0553304 consensus TPR repeat-containing protein [General f 98.98
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.98
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 98.98
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 98.97
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 98.93
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 98.93
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.92
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 98.91
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 98.9
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.89
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.86
KOG0128 881 consensus RNA-binding protein SART3 (RRM superfami 98.86
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.86
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.85
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 98.85
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 98.85
COG0457291 NrfG FOG: TPR repeat [General function prediction 98.81
COG0457291 NrfG FOG: TPR repeat [General function prediction 98.79
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.79
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.78
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.77
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 98.77
KOG0128 881 consensus RNA-binding protein SART3 (RRM superfami 98.75
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.75
PRK02603172 photosystem I assembly protein Ycf3; Provisional 98.73
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.73
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 98.71
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.71
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.67
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.67
CHL00033168 ycf3 photosystem I assembly protein Ycf3 98.67
PRK10803263 tol-pal system protein YbgF; Provisional 98.67
PRK02603172 photosystem I assembly protein Ycf3; Provisional 98.66
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.66
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 98.65
PRK10803263 tol-pal system protein YbgF; Provisional 98.65
CHL00033168 ycf3 photosystem I assembly protein Ycf3 98.64
PRK11906458 transcriptional regulator; Provisional 98.64
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.63
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.59
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 98.59
PRK11906458 transcriptional regulator; Provisional 98.59
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.58
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.56
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.55
COG4105254 ComL DNA uptake lipoprotein [General function pred 98.54
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 98.52
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.52
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 98.51
COG4105254 ComL DNA uptake lipoprotein [General function pred 98.5
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.48
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.48
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.48
PRK15331165 chaperone protein SicA; Provisional 98.47
COG4700251 Uncharacterized protein conserved in bacteria cont 98.45
PRK15331165 chaperone protein SicA; Provisional 98.45
COG4700251 Uncharacterized protein conserved in bacteria cont 98.45
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 98.45
PF12688120 TPR_5: Tetratrico peptide repeat 98.41
KOG1941518 consensus Acetylcholine receptor-associated protei 98.41
COG1729262 Uncharacterized protein conserved in bacteria [Fun 98.4
COG1729262 Uncharacterized protein conserved in bacteria [Fun 98.4
KOG1941 518 consensus Acetylcholine receptor-associated protei 98.36
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 98.34
PF1337173 TPR_9: Tetratricopeptide repeat 98.34
PF12688120 TPR_5: Tetratrico peptide repeat 98.3
PF1337173 TPR_9: Tetratricopeptide repeat 98.3
PF13512142 TPR_18: Tetratricopeptide repeat 98.26
PF13512142 TPR_18: Tetratricopeptide repeat 98.21
KOG2300 629 consensus Uncharacterized conserved protein [Funct 98.2
KOG4648536 consensus Uncharacterized conserved protein, conta 98.19
KOG2471696 consensus TPR repeat-containing protein [General f 98.16
KOG4234271 consensus TPR repeat-containing protein [General f 98.15
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.13
KOG4234271 consensus TPR repeat-containing protein [General f 98.09
PF06552186 TOM20_plant: Plant specific mitochondrial import r 98.07
KOG1586288 consensus Protein required for fusion of vesicles 98.06
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 98.05
KOG2796366 consensus Uncharacterized conserved protein [Funct 98.05
KOG2796366 consensus Uncharacterized conserved protein [Funct 98.04
KOG2610491 consensus Uncharacterized conserved protein [Funct 97.98
KOG4648 536 consensus Uncharacterized conserved protein, conta 97.96
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 97.95
KOG2471696 consensus TPR repeat-containing protein [General f 97.95
PF1342844 TPR_14: Tetratricopeptide repeat 97.93
KOG4555175 consensus TPR repeat-containing protein [Function 97.86
PF1342844 TPR_14: Tetratricopeptide repeat 97.85
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 97.83
KOG4555175 consensus TPR repeat-containing protein [Function 97.83
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 97.77
KOG1585308 consensus Protein required for fusion of vesicles 97.76
KOG1585308 consensus Protein required for fusion of vesicles 97.76
PF13281374 DUF4071: Domain of unknown function (DUF4071) 97.74
KOG1586288 consensus Protein required for fusion of vesicles 97.74
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 97.72
COG5191435 Uncharacterized conserved protein, contains HAT (H 97.71
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 97.7
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 97.62
PF06552186 TOM20_plant: Plant specific mitochondrial import r 97.62
KOG0530318 consensus Protein farnesyltransferase, alpha subun 97.62
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 97.61
KOG2610 491 consensus Uncharacterized conserved protein [Funct 97.59
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 97.59
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 97.55
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 97.54
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 97.54
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 97.53
PF13281374 DUF4071: Domain of unknown function (DUF4071) 97.53
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 97.52
PF10345608 Cohesin_load: Cohesin loading factor; InterPro: IP 97.48
KOG4507 886 consensus Uncharacterized conserved protein, conta 97.47
COG3118304 Thioredoxin domain-containing protein [Posttransla 97.46
KOG0530318 consensus Protein farnesyltransferase, alpha subun 97.44
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 97.38
PF1343134 TPR_17: Tetratricopeptide repeat 97.35
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 97.34
COG3118304 Thioredoxin domain-containing protein [Posttransla 97.33
PF1343134 TPR_17: Tetratricopeptide repeat 97.32
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 97.31
COG2976207 Uncharacterized protein conserved in bacteria [Fun 97.29
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 97.29
COG5191 435 Uncharacterized conserved protein, contains HAT (H 97.19
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 97.17
KOG2300629 consensus Uncharacterized conserved protein [Funct 97.14
KOG4507 886 consensus Uncharacterized conserved protein, conta 97.11
COG2976207 Uncharacterized protein conserved in bacteria [Fun 97.03
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 97.0
PF03704146 BTAD: Bacterial transcriptional activator domain; 96.92
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 96.85
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 96.82
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 96.82
PF03704146 BTAD: Bacterial transcriptional activator domain; 96.78
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 96.76
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 96.73
PF07079549 DUF1347: Protein of unknown function (DUF1347); In 96.72
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 96.69
KOG3783546 consensus Uncharacterized conserved protein [Funct 96.67
KOG0376 476 consensus Serine-threonine phosphatase 2A, catalyt 96.66
KOG0376 476 consensus Serine-threonine phosphatase 2A, catalyt 96.63
PRK13184932 pknD serine/threonine-protein kinase; Reviewed 96.63
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 96.6
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 96.49
PF10345608 Cohesin_load: Cohesin loading factor; InterPro: IP 96.49
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 96.49
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 96.49
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 96.4
PF07079549 DUF1347: Protein of unknown function (DUF1347); In 96.39
KOG2041 1189 consensus WD40 repeat protein [General function pr 96.26
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 96.21
COG5159421 RPN6 26S proteasome regulatory complex component [ 95.94
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 95.92
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 95.85
KOG1464 440 consensus COP9 signalosome, subunit CSN2 [Posttran 95.8
KOG2422665 consensus Uncharacterized conserved protein [Funct 95.75
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 95.74
KOG2422665 consensus Uncharacterized conserved protein [Funct 95.73
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 95.69
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 95.64
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 95.56
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 95.5
KOG2041 1189 consensus WD40 repeat protein [General function pr 95.4
KOG1463411 consensus 26S proteasome regulatory complex, subun 95.37
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 95.37
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 95.22
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 95.19
PRK10941269 hypothetical protein; Provisional 95.16
KOG3824 472 consensus Huntingtin interacting protein HYPE [Gen 95.14
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 95.08
KOG15381081 consensus Uncharacterized conserved protein WDR10, 95.03
KOG3807556 consensus Predicted membrane protein ST7 (tumor su 94.96
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 94.91
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 94.91
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 94.85
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 94.85
COG1747 711 Uncharacterized N-terminal domain of the transcrip 94.82
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 94.67
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 94.66
KOG1550552 consensus Extracellular protein SEL-1 and related 94.6
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 94.6
PRK10941269 hypothetical protein; Provisional 94.56
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 94.55
KOG1550552 consensus Extracellular protein SEL-1 and related 94.35
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 94.34
PF09986214 DUF2225: Uncharacterized protein conserved in bact 94.33
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 94.32
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 94.07
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 93.71
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 93.64
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 93.37
PF0218432 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 93.06
KOG3783546 consensus Uncharacterized conserved protein [Funct 92.92
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 92.91
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 92.91
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 92.88
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 92.64
KOG3807556 consensus Predicted membrane protein ST7 (tumor su 92.61
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 92.49
COG3914 620 Spy Predicted O-linked N-acetylglucosamine transfe 92.39
COG4649221 Uncharacterized protein conserved in bacteria [Fun 92.38
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 92.34
COG4941415 Predicted RNA polymerase sigma factor containing a 92.19
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 92.11
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 92.1
COG5159421 RPN6 26S proteasome regulatory complex component [ 92.05
PF09986214 DUF2225: Uncharacterized protein conserved in bact 92.03
COG4976287 Predicted methyltransferase (contains TPR repeat) 92.0
COG3914 620 Spy Predicted O-linked N-acetylglucosamine transfe 91.95
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 91.91
KOG0529 421 consensus Protein geranylgeranyltransferase type I 91.65
PF0772036 TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 91.57
COG4649221 Uncharacterized protein conserved in bacteria [Fun 91.29
KOG0529 421 consensus Protein geranylgeranyltransferase type I 90.97
KOG1463411 consensus 26S proteasome regulatory complex, subun 90.89
COG4976287 Predicted methyltransferase (contains TPR repeat) 90.87
PF0218432 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 90.72
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 90.61
PRK11619644 lytic murein transglycosylase; Provisional 90.3
KOG3364149 consensus Membrane protein involved in organellar 89.79
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 89.77
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 89.75
KOG2581 493 consensus 26S proteasome regulatory complex, subun 89.63
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 89.56
PRK11619 644 lytic murein transglycosylase; Provisional 89.39
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 89.28
KOG3364149 consensus Membrane protein involved in organellar 88.99
COG3629280 DnrI DNA-binding transcriptional activator of the 88.24
COG2912269 Uncharacterized conserved protein [Function unknow 87.86
PF04190260 DUF410: Protein of unknown function (DUF410) ; Int 87.79
COG3629280 DnrI DNA-binding transcriptional activator of the 87.75
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 87.26
PRK12798421 chemotaxis protein; Reviewed 85.33
KOG1839 1236 consensus Uncharacterized protein CLU1/cluA/TIF31 84.87
PF15015569 NYD-SP12_N: Spermatogenesis-associated, N-terminal 84.72
KOG1310758 consensus WD40 repeat protein [General function pr 84.38
COG5536328 BET4 Protein prenyltransferase, alpha subunit [Pos 84.29
PF1051638 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat 83.22
KOG4814 872 consensus Uncharacterized conserved protein [Funct 83.14
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 82.49
KOG1310 758 consensus WD40 repeat protein [General function pr 81.9
KOG4814872 consensus Uncharacterized conserved protein [Funct 81.48
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 81.47
COG2912269 Uncharacterized conserved protein [Function unknow 80.94
PF1286294 Apc5: Anaphase-promoting complex subunit 5 80.84
PF1286294 Apc5: Anaphase-promoting complex subunit 5 80.49
KOG18391236 consensus Uncharacterized protein CLU1/cluA/TIF31 80.01
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-139  Score=1044.60  Aligned_cols=697  Identities=58%  Similarity=0.954  Sum_probs=682.2

Q ss_pred             chHHHHHHHHhcCCChhhhhhhhhhhccCCCHHHhccCcccccchhhhhhh-cccccccCchhHHHhhhhhhccccccCC
Q 040951            2 RLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRK-RFESFVPVPDSLLQKARQEQQHVIALDP   80 (701)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~f~~~k~~l~~~~~~~w~~~p~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~   80 (701)
                      ++++++|+||.+||||++||+||||+|++||+|||.+|||+||+++||||+ |.|+|||+|||+++++.+.++.++++|+
T Consensus       121 k~ke~iE~y~~e~pkv~~QFaDLKr~LatvTe~EW~~IPEvgD~r~r~krn~r~Ekf~p~pds~~~~~~~~~~~~~~ld~  200 (913)
T KOG0495|consen  121 KLKEEIEKYRKENPKVQQQFADLKRKLATVTEDEWDSIPEVGDYRNRNKRNPRAEKFTPVPDSLLASAINENEDSSSLDP  200 (913)
T ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHhhcCHHHhhcCCcccchhhhhhccchhhhcCCCchHHHHHhcccCccccccCc
Confidence            678999999999999999999999999999999999999999999999998 8899999999999999999999999998


Q ss_pred             CcccC-CCCcccccchhhhhhhhhhhhhhhcccccCCCCCccccChhhhHHhhhhcccccchhhhcHHHHHHHHHH----
Q 040951           81 SSRAA-GGAESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRA----  155 (701)
Q Consensus        81 ~~~~~-~~~~~~~~~~~~~~~~r~~~l~~~ld~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~d~~~ar~ll~~----  155 (701)
                      .++.. +-..+.+|..++||+||++||+.+|++++|+++|||++||+||||+|+++++.++++++||+|||.||+|    
T Consensus       201 ~~g~etp~~~g~~t~~~kig~ar~~l~~~kl~qvsdsvtgqtvvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvret  280 (913)
T KOG0495|consen  201 EGGLETPLQSGQMTPGVKIGQARNTLMDMKLNQVSDSVTGQTVVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRET  280 (913)
T ss_pred             cCCccCCCcCCCcCccchhhHHHHHHHhhhhhhccccCCCCcccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhc
Confidence            74332 1112357788899999999999999999999999999999999999999999999999999999999999    


Q ss_pred             --------HHHHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHhhcCcchHHHHHHHHHHhCCCcHHHHHHHHHccc
Q 040951          156 --------IQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDH  227 (701)
Q Consensus       156 --------i~~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l~~~~~A~~~l~~al~~~P~~~~lw~~~~~le~  227 (701)
                              |++|||||.+|++..|+.+|++||+.||+|+|+||+++||+.++.|+.++++|++++|+||.+|++++++|.
T Consensus       281 nP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~  360 (913)
T KOG0495|consen  281 NPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLES  360 (913)
T ss_pred             CCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhh
Confidence                    999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHHhccChHHHHHHHHHHHHhCCCCH
Q 040951          228 DKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKER  307 (701)
Q Consensus       228 ~~~~a~~~l~kal~~~P~~~~l~~~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l~~~~~A~~~l~~a~~~~p~~~  307 (701)
                      +...+.+|++|||+.+|+|+.||++.+++++.++|+.++.+|+++||.+.++|++|++++.|++|+++++++++..|+++
T Consensus       361 ~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~  440 (913)
T KOG0495|consen  361 DTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREIIPTDR  440 (913)
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCC--------------------------
Q 040951          308 AIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGS--------------------------  361 (701)
Q Consensus       308 ~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~--------------------------  361 (701)
                      .+|+..+.+++.+|+.+++.+++.+++..+..+++.+.++.|+..|+.|+..|+                          
T Consensus       441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~  520 (913)
T KOG0495|consen  441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL  520 (913)
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence            999999999999999999999999999999999999999999999999999988                          


Q ss_pred             -cHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 040951          362 -DAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDV  440 (701)
Q Consensus       362 -~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~  440 (701)
                       +++.+...+.++.|+.+|..+|+.+|....+|...+.+...+|..++...+|++++..+|..+.+|+|+++.++..||+
T Consensus       521 ~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv  600 (913)
T KOG0495|consen  521 DDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDV  600 (913)
T ss_pred             hhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCc
Confidence             7999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh
Q 040951          441 PAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKR  520 (701)
Q Consensus       441 ~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~  520 (701)
                      ..|+.++.++++.+|++.++|+...++...+.++++|+.+|.++....|+.++|+..+.+++.+++.++|+.+++++++.
T Consensus       601 ~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~  680 (913)
T KOG0495|consen  601 PAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS  680 (913)
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951          521 FPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWL  600 (701)
Q Consensus       521 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  600 (701)
                      +|.++++|+++|+++.++++.+.|++.|..+++.||.++++|+.++.+.+.   .|+..+|+.+++++..+||+++.+|+
T Consensus       681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk---~~~~~rAR~ildrarlkNPk~~~lwl  757 (913)
T KOG0495|consen  681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK---DGQLVRARSILDRARLKNPKNALLWL  757 (913)
T ss_pred             CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH---hcchhhHHHHHHHHHhcCCCcchhHH
Confidence            999999999999999999999999999999999999999999999999999   99999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHH
Q 040951          601 ATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKAR  680 (701)
Q Consensus       601 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  680 (701)
                      ..++++.+.|+.++|..++.+||+.||+++.+|...|+++.+.++++.+.+||++|.+||.++..+|.+||...++++|+
T Consensus       758 e~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar  837 (913)
T KOG0495|consen  758 ESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAR  837 (913)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCcccccccC
Q 040951          681 NWFNKAVSLDPDTGDFWALYY  701 (701)
Q Consensus       681 ~~~~~al~~~p~~~d~w~~~y  701 (701)
                      +||+||++.+|++||+|+|||
T Consensus       838 ~Wf~Ravk~d~d~GD~wa~fy  858 (913)
T KOG0495|consen  838 EWFERAVKKDPDNGDAWAWFY  858 (913)
T ss_pred             HHHHHHHccCCccchHHHHHH
Confidence            999999999999999999997

>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression) Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG3783 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>PRK13184 pknD serine/threonine-protein kinase; Reviewed Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG2422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>KOG2422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing Back     alignment and domain information
>KOG3783 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>PRK11619 lytic murein transglycosylase; Provisional Back     alignment and domain information
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>PRK11619 lytic murein transglycosylase; Provisional Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>COG2912 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK12798 chemotaxis protein; Reviewed Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG4814 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4814 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>COG2912 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query701
2fo7_A136 Crystal Structure Of An 8 Repeat Consensus Tpr Supe 3e-04
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 Back     alignment and structure 
Iteration: 1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Query: 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSV 587
           W  LG    + G   EA E YQ      P     WY+L N   K+   +   +A      
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD---EAIEYYQK 60
Query: 588 ARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAEL 636
           A   +P + E W     A  K G+  EA  +  KAL+  P S   W  L
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query701
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 1e-31
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 1e-28
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 2e-24
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 8e-20
2ooe_A 530 Cleavage stimulation factor 77 kDa subunit; HAT do 1e-13
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 2e-06
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 8e-25
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 4e-13
2uy1_A 493 Cleavage stimulation factor 77; RNA-binding protei 6e-13
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 1e-09
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 6e-04
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 9e-22
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 6e-21
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 2e-18
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 2e-09
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 1e-05
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 5e-17
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 2e-16
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 1e-15
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 7e-12
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
2gw1_A514 Mitochondrial precursor proteins import receptor; 2e-09
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 3e-09
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 9e-09
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 5e-08
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 1e-04
2xpi_A 597 Anaphase-promoting complex subunit CUT9; cell cycl 1e-07
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 1e-06
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 6e-06
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 1e-04
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 2e-07
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 2e-04
1w3b_A 388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 3e-07
1w3b_A 388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 9e-06
4g1t_A472 Interferon-induced protein with tetratricopeptide 1e-06
4g1t_A 472 Interferon-induced protein with tetratricopeptide 9e-06
4g1t_A472 Interferon-induced protein with tetratricopeptide 1e-05
4g1t_A472 Interferon-induced protein with tetratricopeptide 3e-05
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 1e-06
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 1e-04
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 2e-06
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 3e-06
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 4e-06
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 5e-06
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 7e-06
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 1e-05
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 8e-04
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 8e-06
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 1e-05
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 1e-05
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 1e-05
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 9e-04
4eqf_A 365 PEX5-related protein; accessory protein, tetratric 1e-05
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 2e-05
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 7e-04
1fch_A 368 Peroxisomal targeting signal 1 receptor; protein-p 2e-05
1fch_A 368 Peroxisomal targeting signal 1 receptor; protein-p 4e-04
3cv0_A 327 Peroxisome targeting signal 1 receptor PEX5; TPR m 2e-05
3ieg_A 359 DNAJ homolog subfamily C member 3; TPR motif, chap 4e-05
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 5e-04
2y4t_A 450 DNAJ homolog subfamily C member 3; chaperone, endo 5e-05
2y4t_A 450 DNAJ homolog subfamily C member 3; chaperone, endo 1e-04
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 2e-04
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 3e-04
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 1e-04
3u4t_A272 TPR repeat-containing protein; structural genomics 1e-04
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 2e-04
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 2e-04
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
 Score =  128 bits (323), Expect = 1e-31
 Identities = 54/472 (11%), Positives = 121/472 (25%), Gaps = 69/472 (14%)

Query: 265 LLHRAVECCPLDVELWLALARL---ETYGVARSVLNKARKKLPKERAIWIAAAKLEEANG 321
           +  + +E  P D++ W  L R    +    AR    +   + P     W    + E    
Sbjct: 1   MAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAK 60

Query: 322 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIA------------------------- 356
           N   V K+ +R +  +   ++     ++++E +                           
Sbjct: 61  NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS 120

Query: 357 ----------EKAGSDAEECKKRGSIETARAIFSHACTV-FLTKKSIWLKAAQLEKTHGS 405
                      K         +   I   R ++   C    +  + +W    + E+    
Sbjct: 121 YQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180

Query: 406 RESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAF 465
             +   +  ++  Y     V        K L      A  +  +         ++W    
Sbjct: 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLD---RNAPSVPPQNTPQEAQQVDMWKKYI 237

Query: 466 KLEFEN---------------RELERARMLLAKARD--------MGGTERVWMKSAIVER 502
           + E  N                  E+  ++L    D        +  + ++  +   +  
Sbjct: 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297

Query: 503 ELGNNAEERGFIEEGLKRF-PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPL 561
               + E     E  +         L+      EE     ++    Y            L
Sbjct: 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL 357

Query: 562 WYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKH-GNKKEADSFIA 620
            Y       +R    G+   R +   AR        +++     E     +K  A     
Sbjct: 358 VYIQYMKFARRAE--GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE 415

Query: 621 KALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWH 672
             L+K  +        I  + H +  +  +    +      +    +   W 
Sbjct: 416 LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 467
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query701
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 100.0
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 100.0
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 100.0
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 100.0
2gw1_A514 Mitochondrial precursor proteins import receptor; 100.0
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 100.0
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 100.0
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 100.0
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 100.0
2gw1_A514 Mitochondrial precursor proteins import receptor; 100.0
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 100.0
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 100.0
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 100.0
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.98
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.98
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.97
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.97
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.96
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.96
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.96
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.95
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.95
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.95
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.94
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.94
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.94
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.94
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.93
3u4t_A272 TPR repeat-containing protein; structural genomics 99.92
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 99.92
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.92
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 99.92
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.92
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.91
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.91
3u4t_A272 TPR repeat-containing protein; structural genomics 99.91
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.91
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.91
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.91
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.91
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.89
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.88
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.88
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.88
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.88
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.88
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.88
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.88
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.88
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.87
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.87
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.87
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.87
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.87
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.87
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.87
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.86
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.86
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.86
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.86
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.85
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.84
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.84
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.82
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.82
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.81
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.81
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.8
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.8
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.79
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.79
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.78
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.77
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.76
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.76
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.76
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.76
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.75
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 99.75
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.74
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.74
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.74
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.73
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.73
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.73
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.72
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.72
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.72
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.72
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 99.71
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.71
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.7
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.69
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.68
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.68
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.68
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 99.68
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 99.67
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 99.64
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.63
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 99.63
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.63
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.63
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.62
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.61
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.6
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.6
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.58
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.58
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.57
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.56
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.56
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 99.55
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.55
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 99.54
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.54
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.52
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.5
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.5
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.49
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.48
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.47
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.47
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.45
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.45
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.45
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.44
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.43
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.43
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.42
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.42
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.41
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.4
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 99.39
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 99.39
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.38
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 99.38
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 99.37
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.37
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.36
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.36
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 99.35
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 99.35
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 99.35
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 99.34
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 99.33
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 99.33
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 99.33
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.32
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 99.32
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 99.3
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 99.3
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 99.29
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.29
3q49_B137 STIP1 homology and U box-containing protein 1; E3 99.29
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 99.28
3q49_B137 STIP1 homology and U box-containing protein 1; E3 99.27
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.27
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 99.26
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.25
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 99.25
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 99.24
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.24
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 99.24
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 99.23
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 99.23
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 99.23
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.23
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 99.2
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 99.18
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.18
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 99.18
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 99.18
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 99.17
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.17
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 99.17
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 99.17
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 99.16
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 99.14
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.13
3k9i_A117 BH0479 protein; putative protein binding protein, 99.11
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 99.11
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 99.11
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 99.1
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 99.1
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.09
3k9i_A117 BH0479 protein; putative protein binding protein, 99.08
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 99.08
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 99.01
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.01
2kat_A115 Uncharacterized protein; NESG, structure, structur 98.87
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 98.82
2kat_A115 Uncharacterized protein; NESG, structure, structur 98.82
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 98.79
2l6j_A111 TPR repeat-containing protein associated with HSP; 98.77
2l6j_A111 TPR repeat-containing protein associated with HSP; 98.76
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 98.75
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 98.74
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 98.71
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 98.66
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 98.66
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 98.62
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 98.61
1klx_A138 Cysteine rich protein B; structural genomics, heli 98.57
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 98.56
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 98.49
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 98.49
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 98.46
1klx_A138 Cysteine rich protein B; structural genomics, heli 98.45
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 98.45
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.36
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 98.36
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.27
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 98.23
1pc2_A152 Mitochondria fission protein; unknown function; NM 98.08
1pc2_A152 Mitochondria fission protein; unknown function; NM 98.05
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 97.85
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 97.84
3qww_A433 SET and MYND domain-containing protein 2; methyltr 97.77
3qww_A433 SET and MYND domain-containing protein 2; methyltr 97.57
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 97.44
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 97.42
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 97.39
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 97.24
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 97.02
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 96.99
3txn_A 394 26S proteasome regulatory complex subunit P42B; PC 96.61
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 96.51
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.23
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 96.15
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 96.05
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 95.99
1qsa_A 618 Protein (soluble lytic transglycosylase SLT70); al 95.95
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 95.81
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 95.63
1qsa_A618 Protein (soluble lytic transglycosylase SLT70); al 95.5
3kae_A242 CDC27, possible protein of nuclear scaffold; tetra 95.35
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 95.34
4b4t_P 445 26S proteasome regulatory subunit RPN5; hydrolase, 95.25
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 95.2
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 94.92
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 94.48
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 94.43
4b4t_P 445 26S proteasome regulatory subunit RPN5; hydrolase, 94.18
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 94.17
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 94.07
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 94.04
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 93.26
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 92.61
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 92.47
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 92.39
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 91.7
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 91.7
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 91.4
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 90.78
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 89.54
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 89.5
4b4t_S 523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 89.34
1ya0_A 497 SMG-7 transcript variant 2; alpha-helical repeat, 88.91
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 88.61
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 88.36
3kae_A242 CDC27, possible protein of nuclear scaffold; tetra 88.23
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 88.2
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 87.59
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 86.62
1wy6_A172 Hypothetical protein ST1625; helical repeat protei 86.6
1ya0_A 497 SMG-7 transcript variant 2; alpha-helical repeat, 85.91
1wy6_A172 Hypothetical protein ST1625; helical repeat protei 84.19
3lpz_A336 GET4 (YOR164C homolog); protein targeting, tail-an 81.72
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
Probab=100.00  E-value=2.5e-38  Score=335.26  Aligned_cols=367  Identities=15%  Similarity=0.127  Sum_probs=227.3

Q ss_pred             HhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcH
Q 040951          284 ARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDA  363 (701)
Q Consensus       284 ~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a  363 (701)
                      .+.|++++|...++++++..|++..++..++.++...|++++|...++++++..|.+     ...|..++..+       
T Consensus        10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~-----~~~~~~lg~~~-------   77 (388)
T 1w3b_A           10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-----AEAYSNLGNVY-------   77 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHH-------
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----hHHHHHHHHHH-------
Confidence            334566666666666666666666666666666666666666666666666554443     34455554433       


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 040951          364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAA  443 (701)
Q Consensus       364 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A  443 (701)
                         ...|++++|+..|++++..+|++..+|..++.++...|++++|...|++++..+|++..++..++.++...|++++|
T Consensus        78 ---~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  154 (388)
T 1w3b_A           78 ---KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA  154 (388)
T ss_dssp             ---HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred             ---HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHH
Confidence               55666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCC
Q 040951          444 RDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFP  522 (701)
Q Consensus       444 ~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  522 (701)
                      +..|++++..+|++..+|..++.++...|++++|+..|++++...|+ ..++..+|.++...|++++|+..|++++...|
T Consensus       155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  234 (388)
T 1w3b_A          155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP  234 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            66666666666666666666666666666666666666666666665 55666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951          523 SFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLAT  602 (701)
Q Consensus       523 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  602 (701)
                      +++.++..+|.++...|++++|+..|++++...|+++.++..++.++..   .|++++|+..|++++..+|.++.+|..+
T Consensus       235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l  311 (388)
T 1w3b_A          235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE---KGSVAEAEDCYNTALRLCPTHADSLNNL  311 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666   6666666666666666666666666666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHH
Q 040951          603 IRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNW  682 (701)
Q Consensus       603 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  682 (701)
                      +.++...|++++|...++++++..|+                              ++.++..+|.++...|++++|...
T Consensus       312 ~~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~  361 (388)
T 1w3b_A          312 ANIKREQGNIEEAVRLYRKALEVFPE------------------------------FAAAHSNLASVLQQQGKLQEALMH  361 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSCTT------------------------------CHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC------------------------------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence            66666666666666666666555554                              355555566666666666666666


Q ss_pred             HHHHHHhCCCCccccc
Q 040951          683 FNKAVSLDPDTGDFWA  698 (701)
Q Consensus       683 ~~~al~~~p~~~d~w~  698 (701)
                      |+++++++|++.++|.
T Consensus       362 ~~~a~~~~p~~~~a~~  377 (388)
T 1w3b_A          362 YKEAIRISPTFADAYS  377 (388)
T ss_dssp             HHHHHTTCTTCHHHHH
T ss_pred             HHHHHhhCCCCHHHHH
Confidence            6666666666555543
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* Back     alignment and structure
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Back     alignment and structure
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Back     alignment and structure
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Back     alignment and structure
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 Back     alignment and structure
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 Back     alignment and structure
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 701
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 2e-16
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 1e-11
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 4e-11
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 9e-09
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 6e-14
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 7e-14
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 8e-12
d1w3ba_ 388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 6e-07
d1zbpa1264 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V 1e-08
d1dcea1334 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr 3e-07
d1ya0a1 497 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T 4e-05
d1xnfa_259 a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli 3e-04
d2c2la1201 a.118.8.1 (A:24-224) STIP1 homology and U box-cont 6e-04
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.5 bits (192), Expect = 2e-16
 Identities = 34/267 (12%), Positives = 80/267 (29%), Gaps = 33/267 (12%)

Query: 392 IWLKAAQLEKTHGSRESL--------IALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPA- 442
           +W K  Q EK++  R           +    + +        +W   A+    +  + A 
Sbjct: 10  MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 69

Query: 443 -------------ARDILQEAYATI-PNSEEIWLAAFKLEFENRELERARMLLAKA--RD 486
                        A +I + A +T+   +  ++ A    E    + E+   +  +    +
Sbjct: 70  KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 129

Query: 487 MGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKE-AK 545
                 V+++     R        R   ++  +   +  ++++    +E      K  A 
Sbjct: 130 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189

Query: 546 EAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPE----IWLA 601
           + ++ G  +  +      +  +       LN  +  R +         L PE    IW  
Sbjct: 190 KIFELGLKKYGDIPEYVLAYIDYLSH---LNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 246

Query: 602 TIRAESKHGNKKEADSFIAKALQKCPN 628
            +  ES  G+         +       
Sbjct: 247 FLAFESNIGDLASILKVEKRRFTAFRE 273
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query701
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.94
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.93
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.86
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.86
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.85
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.84
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.83
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.83
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.8
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.75
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.74
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.73
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.51
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.45
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.45
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.44
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.43
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.42
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.39
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.37
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.36
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.34
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.26
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.26
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.24
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.23
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 99.22
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.18
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.16
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.15
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 99.14
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 99.14
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.12
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.09
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.09
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 99.08
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 99.08
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.08
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.05
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.05
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 99.02
d1zbpa1 264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.77
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.74
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 98.65
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 98.65
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 98.63
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 98.47
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.34
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.33
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 97.76
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 97.66
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 97.51
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 97.44
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 97.29
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 97.17
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 97.11
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 96.9
d1wy6a1161 Hypothetical protein ST1625 {Archaeon Sulfolobus t 80.45
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=294.86  Aligned_cols=376  Identities=16%  Similarity=0.108  Sum_probs=332.2

Q ss_pred             HHHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHHh----ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHH
Q 040951          252 ALVEISSEEEARILLHRAVECCPLDVELWLALAR----LETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVG  327 (701)
Q Consensus       252 ~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~----l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~  327 (701)
                      .+...+++++|+..|+++++..|+++.+|..++.    .|++++|+..|+++++.+|+++.+|..+|.++...|++++|.
T Consensus         8 ~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~   87 (388)
T d1w3ba_           8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI   87 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccc
Confidence            3455679999999999999999999988876554    489999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 040951          328 KIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRE  407 (701)
Q Consensus       328 ~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  407 (701)
                      ..+..+....+..     ...+.......          ...+....+...........+................+...
T Consensus        88 ~~~~~~~~~~~~~-----~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (388)
T d1w3ba_          88 EHYRHALRLKPDF-----IDGYINLAAAL----------VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE  152 (388)
T ss_dssp             HHHHHHHHHCTTC-----HHHHHHHHHHH----------HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHH
T ss_pred             ccccccccccccc-----ccccccccccc----------cccccccccccccccccccccccccccccccccccccchhh
Confidence            9999998876655     33444433332          55666777777777888888888888888888888999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 040951          408 SLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDM  487 (701)
Q Consensus       408 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  487 (701)
                      .+...+.+.+...|.+..++..++..+...|++++|...+++++..+|++..++..++.++...|++++|+..++++...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  232 (388)
T d1w3ba_         153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q 040951          488 GGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLA  566 (701)
Q Consensus       488 ~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  566 (701)
                      .|. ...+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+.++...|.+...+..++
T Consensus       233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  312 (388)
T d1w3ba_         233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA  312 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHH
Confidence            887 8888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccch
Q 040951          567 NLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRK  646 (701)
Q Consensus       567 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~  646 (701)
                      .++..   .|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+                  
T Consensus       313 ~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~------------------  371 (388)
T d1w3ba_         313 NIKRE---QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------------------  371 (388)
T ss_dssp             HHHHT---TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT------------------
T ss_pred             HHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------
Confidence            99999   999999999999999999999999999999999999999999999999988887                  


Q ss_pred             hHHHHHHHhcCCChHHHHHHHHHHHhcCC
Q 040951          647 SKGKDALVKSDRDPHVFAAVAKLFWHDRK  675 (701)
Q Consensus       647 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~  675 (701)
                                  ++.++..+|.+|.+.|+
T Consensus       372 ------------~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         372 ------------FADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             ------------CHHHHHHHHHHHHHTCC
T ss_pred             ------------CHHHHHHHHHHHHHcCC
Confidence                        47788888888887775
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure