Citrus Sinensis ID: 041074

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
GTSAAVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEEQLLIGDDAVHGEEAYALWGDGEKYDST
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccHHccccccccccccEEEccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccHHHHccccccccccccccccc
cccccccHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccccccHHHHHcccEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHcccHHHHcccEEcccccEEEEcHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEHcHHEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHHcHHHHHHcccccccccc
gtsaavpdwlnkgdnAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMsfgdkllpfwgkagpalGQKFLikqsalpettqfhddgsvetamvlpfypmasMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTvgafslwgggflfhwgvmdysgGYVIHLssgiagftaaywvgprstkdrerfppnnVIMMLAGAGLLwmgwagfnggdpytanIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVcitpgaglvQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTglfaepklcslflpvtnsrggvyggsgGIQILKQLAGAAFIIGWNVVVTSIICVIInkviplrmteeqlligddavhgeeayalwgdgekydst
gtsaavpdwlnkgDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRstkdrerfppNNVIMMLAGAGLLWMGWAGFNGGDPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEEQLLIGDDAVHGEEAyalwgdgekydst
GTSAAVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVImmlagagllwmgwagFNGGDPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHavagllggvltglFAEPKLCSLFLPVTNSRggvyggsggIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEEQLLIGDDAVHGEEAYALWGDGEKYDST
*******DWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRST***ERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEEQLLIGDDAVHGEEAYALWG********
****AVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEEQLLIGDDAVHGEEAYALWG*G******
GTSAAVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEEQLLIGDDAVHGEEAYALWGDGEKYDST
******PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEEQLLIGDDAVHGEEAYALWGDG******
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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GTSAAVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEEQLLIGDDAVHGEEAYALWGDGEKYDST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query452 2.2.26 [Sep-21-2011]
Q84KJ6498 Ammonium transporter 3 me yes no 0.991 0.899 0.830 0.0
Q69T29480 Ammonium transporter 3 me no no 0.997 0.939 0.767 0.0
Q851M9479 Ammonium transporter 3 me no no 0.997 0.941 0.753 0.0
Q8S230501 Ammonium transporter 2 me no no 0.988 0.892 0.691 0.0
Q9M6N7475 Ammonium transporter 2 OS yes no 0.964 0.917 0.711 0.0
Q84KJ7486 Ammonium transporter 2 me no no 0.975 0.907 0.723 1e-180
Q8S233497 Ammonium transporter 2 me no no 0.988 0.899 0.696 1e-177
O26759412 Putative ammonium transpo yes no 0.889 0.975 0.347 5e-61
O66515423 Ammonia channel OS=Aquife yes no 0.880 0.940 0.350 1e-60
Q10CV4299 Putative ammonium transpo no no 0.480 0.725 0.517 2e-57
>sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/454 (83%), Positives = 409/454 (90%), Gaps = 6/454 (1%)

Query: 5   AVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICW 64
           AVP+WLNKGDNAWQMISATLVG+QSVPGLVILYGSIVKKKWAVNSAFMALYAFAAV +CW
Sbjct: 18  AVPEWLNKGDNAWQMISATLVGMQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVWLCW 77

Query: 65  ATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHD-----DGSVETAMVLPF 119
            TW Y MSFG KLLPFWGKA PALGQ FL+ Q+ LP+TTQF+      D  VET  V P 
Sbjct: 78  VTWGYNMSFGHKLLPFWGKARPALGQSFLLAQAVLPQTTQFYKGGGGADAVVETPWVNPL 137

Query: 120 YPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLF 179
           YPMA+MV+FQCVFAAITL++LAGS+LGRMNIKAWM FVPLWLTFSYTVGAFSLWGGGFLF
Sbjct: 138 YPMATMVYFQCVFAAITLILLAGSLLGRMNIKAWMLFVPLWLTFSYTVGAFSLWGGGFLF 197

Query: 180 HWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAG 239
           HWGVMDYSGGYVIHLSSG+AGFTAAYWVGPRSTKDRERFPPNNV++ML GAG+LWMGWAG
Sbjct: 198 HWGVMDYSGGYVIHLSSGVAGFTAAYWVGPRSTKDRERFPPNNVLLMLTGAGILWMGWAG 257

Query: 240 FNGGDPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITP 299
           FNGGDPY+ANIDSS+AVLNTNICAATSLLVWT LDVIFFKKPSVIGAVQGMITGLVCITP
Sbjct: 258 FNGGDPYSANIDSSLAVLNTNICAATSLLVWTCLDVIFFKKPSVIGAVQGMITGLVCITP 317

Query: 300 GAGLVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTG 359
           GAGLVQGWAAIVMGILSGS+PWFTMM +HKR  LLQ++DDTL VFHTHAVAG LGG  TG
Sbjct: 318 GAGLVQGWAAIVMGILSGSIPWFTMMVVHKRSRLLQQVDDTLGVFHTHAVAGFLGGATTG 377

Query: 360 LFAEPKLCSLFLPVTNSRGGVYGGS-GGIQILKQLAGAAFIIGWNVVVTSIICVIINKVI 418
           LFAEP LCSLFLPVTNSRG  Y G  GG+Q ++Q+AGA FII WNVVVTS++C+ +  V+
Sbjct: 378 LFAEPVLCSLFLPVTNSRGAFYPGRGGGLQFVRQVAGALFIICWNVVVTSLVCLAVRAVV 437

Query: 419 PLRMTEEQLLIGDDAVHGEEAYALWGDGEKYDST 452
           PLRM EE+L IGDDAVHGEEAYALWGDGEKYDST
Sbjct: 438 PLRMPEEELAIGDDAVHGEEAYALWGDGEKYDST 471
Involved in ammonium transport.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q69T29|AMT33_ORYSJ Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1 Back     alignment and function description
>sp|Q851M9|AMT32_ORYSJ Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1 Back     alignment and function description
>sp|Q8S230|AMT22_ORYSJ Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2 Back     alignment and function description
>sp|Q9M6N7|AMT2_ARATH Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2 Back     alignment and function description
>sp|Q84KJ7|AMT21_ORYSJ Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q8S233|AMT23_ORYSJ Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1 Back     alignment and function description
>sp|O26759|Y663_METTH Putative ammonium transporter MTH_663 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_663 PE=3 SV=1 Back     alignment and function description
>sp|O66515|AMT_AQUAE Ammonia channel OS=Aquifex aeolicus (strain VF5) GN=amt PE=1 SV=1 Back     alignment and function description
>sp|Q10CV4|AMT41_ORYSJ Putative ammonium transporter 4 member 1 OS=Oryza sativa subsp. japonica GN=AMT4-1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
225438309483 PREDICTED: ammonium transporter 3 member 0.993 0.929 0.886 0.0
225438311485 PREDICTED: ammonium transporter 3 member 0.993 0.925 0.877 0.0
255563776489 ammonium transporter, putative [Ricinus 1.0 0.924 0.907 0.0
224060485458 ammonium transporter [Populus trichocarp 1.0 0.986 0.911 0.0
225438302485 PREDICTED: ammonium transporter 3 member 0.997 0.929 0.840 0.0
357126077483 PREDICTED: ammonium transporter 3 member 0.991 0.927 0.835 0.0
357126081491 PREDICTED: ammonium transporter 3 member 0.991 0.912 0.832 0.0
115441305498 Os01g0870300 [Oryza sativa Japonica Grou 0.991 0.899 0.830 0.0
148909476487 unknown [Picea sitchensis] 0.991 0.919 0.825 0.0
357520195485 Ammonium transporter 3 member [Medicago 0.988 0.921 0.863 0.0
>gi|225438309|ref|XP_002271114.1| PREDICTED: ammonium transporter 3 member 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/449 (88%), Positives = 425/449 (94%)

Query: 3   SAAVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVI 62
           SA+VPDWLNKGDNAWQMI+ATLVGLQSVPGLVILYGS+VKKKWAVNSAFMALYAFAAVV+
Sbjct: 12  SASVPDWLNKGDNAWQMIAATLVGLQSVPGLVILYGSVVKKKWAVNSAFMALYAFAAVVL 71

Query: 63  CWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPM 122
           CW  WAYKMSFGDKLLPFWGK GPALGQK+L+KQSALP TT +H DG+VETAMV PFYPM
Sbjct: 72  CWVIWAYKMSFGDKLLPFWGKGGPALGQKYLLKQSALPATTHYHKDGTVETAMVTPFYPM 131

Query: 123 ASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWG 182
           A+MVWFQCVFAAIT+++LAGS+LGRMNI+AWM FVPLWLTF YTVGAFSLWGGGFLFHWG
Sbjct: 132 ATMVWFQCVFAAITVILLAGSLLGRMNIRAWMMFVPLWLTFCYTVGAFSLWGGGFLFHWG 191

Query: 183 VMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNG 242
           VMDYSGGYVIHLSSGIAGFT AYWVGPRSTKDRERFPPNNV++MLAGAGLLW+GWAGFNG
Sbjct: 192 VMDYSGGYVIHLSSGIAGFTTAYWVGPRSTKDRERFPPNNVLLMLAGAGLLWLGWAGFNG 251

Query: 243 GDPYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAG 302
           GDPY AN DSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITP AG
Sbjct: 252 GDPYAANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPAAG 311

Query: 303 LVQGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFA 362
           LVQGWAAIVMGILSGSVPWFTMM +HKRWTLL  IDDTL VFHTHAVAG LGG+LTG+FA
Sbjct: 312 LVQGWAAIVMGILSGSVPWFTMMILHKRWTLLHHIDDTLGVFHTHAVAGYLGGILTGIFA 371

Query: 363 EPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRM 422
           EP+LCSLFLPVTNSRG VYGGSGGIQ+LKQLAG AFIIGWN VVTSIIC+++  V+PLRM
Sbjct: 372 EPELCSLFLPVTNSRGAVYGGSGGIQVLKQLAGGAFIIGWNAVVTSIICLVVRVVLPLRM 431

Query: 423 TEEQLLIGDDAVHGEEAYALWGDGEKYDS 451
            EE+LLIGDDAVHGEEAYALWGDGEKYDS
Sbjct: 432 PEEELLIGDDAVHGEEAYALWGDGEKYDS 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225438311|ref|XP_002272735.1| PREDICTED: ammonium transporter 3 member 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255563776|ref|XP_002522889.1| ammonium transporter, putative [Ricinus communis] gi|223537874|gb|EEF39489.1| ammonium transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224060485|ref|XP_002300222.1| ammonium transporter [Populus trichocarpa] gi|222847480|gb|EEE85027.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225438302|ref|XP_002272503.1| PREDICTED: ammonium transporter 3 member 1 [Vitis vinifera] gi|296082640|emb|CBI21645.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357126077|ref|XP_003564715.1| PREDICTED: ammonium transporter 3 member 1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|357126081|ref|XP_003564717.1| PREDICTED: ammonium transporter 3 member 1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|115441305|ref|NP_001044932.1| Os01g0870300 [Oryza sativa Japonica Group] gi|75146874|sp|Q84KJ6.1|AMT31_ORYSJ RecName: Full=Ammonium transporter 3 member 1; Short=OsAMT3;1 gi|28875523|dbj|BAC65232.1| ammonium transporter [Oryza sativa Japonica Group] gi|113534463|dbj|BAF06846.1| Os01g0870300 [Oryza sativa Japonica Group] gi|125528525|gb|EAY76639.1| hypothetical protein OsI_04593 [Oryza sativa Indica Group] gi|125572792|gb|EAZ14307.1| hypothetical protein OsJ_04233 [Oryza sativa Japonica Group] gi|215767749|dbj|BAG99977.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|148909476|gb|ABR17836.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|357520195|ref|XP_003630386.1| Ammonium transporter 3 member [Medicago truncatula] gi|355524408|gb|AET04862.1| Ammonium transporter 3 member [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
UNIPROTKB|Q84KJ7486 AMT2-1 "Ammonium transporter 2 0.975 0.907 0.660 4.8e-158
TAIR|locus:2042917475 AMT2 "ammonium transporter 2" 0.964 0.917 0.644 2.6e-157
TIGR_CMR|CHY_0073438 CHY_0073 "ammonium transporter 0.694 0.716 0.325 3.7e-50
UNIPROTKB|P69681428 amtB "AmtB" [Escherichia coli 0.668 0.705 0.324 7.7e-48
TIGR_CMR|DET_1125408 DET_1125 "ammonium transporter 0.884 0.980 0.320 6.2e-46
ASPGD|ASPL0000068402544 meaA [Emericella nidulans (tax 0.907 0.753 0.293 1.1e-41
TIGR_CMR|SPO_2093431 SPO_2093 "ammonium transporter 0.688 0.721 0.310 5.2e-41
CGD|CAL0000712480 MEP2 [Candida albicans (taxid: 0.685 0.645 0.305 8.3e-39
UNIPROTKB|Q59UP8480 MEP2 "Putative uncharacterized 0.685 0.645 0.305 8.3e-39
UNIPROTKB|G4MMA1485 MGG_16392 "Uncharacterized pro 0.902 0.841 0.291 8.9e-38
UNIPROTKB|Q84KJ7 AMT2-1 "Ammonium transporter 2 member 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 1540 (547.2 bits), Expect = 4.8e-158, P = 4.8e-158
 Identities = 296/448 (66%), Positives = 344/448 (76%)

Query:     5 AVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICW 64
             AVPDWLNKGDNAWQ+ ++TLVG+QS+PGLV+LYGSIVKKKWAVNSAFMALYA+A+ ++ W
Sbjct:    13 AVPDWLNKGDNAWQLTASTLVGIQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASSLLVW 72

Query:    65 ATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMAS 124
                 ++M+FGD+LLPFWGKAG AL Q +L+ ++ LP T   H  G++      PFYP A+
Sbjct:    73 VLVGFRMAFGDQLLPFWGKAGVALTQSYLVGRATLPATA--H--GAIPRTE--PFYPEAT 126

Query:   125 MVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVM 184
             +V FQ  FAAITLV+LAGSVLGRMNIKAWMAF PLWL  SYTVGAFSLWGGGFL+ WGV+
Sbjct:   127 LVLFQFEFAAITLVLLAGSVLGRMNIKAWMAFTPLWLLLSYTVGAFSLWGGGFLYRWGVI 186

Query:   185 DYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGD 244
             DYSGGYVIHLSSGIAGFTAAYWVGPR   DRERF PNN++               FNGG 
Sbjct:   187 DYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFSPNNILLMIAGGGLLWMGWAGFNGGA 246

Query:   245 PYTANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLV 304
             PY ANI +S+AVLNTN+CAATSLL+WT LDVIFF+KPSVIGAVQGM+TGLVCITPGAGLV
Sbjct:   247 PYAANIAASVAVLNTNVCAATSLLMWTCLDVIFFRKPSVIGAVQGMMTGLVCITPGAGLV 306

Query:   305 QGWAAIVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEP 364
             Q WAA+VMGI +GSVPWFTMM +HK+  LL K+DDTL+VFHTH              A P
Sbjct:   307 QTWAAVVMGIFAGSVPWFTMMILHKKSALLMKVDDTLAVFHTHAVAGLLGGILTGLLATP 366

Query:   365 KLCSLFLPVTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTE 424
             +L SL   V   R          QI KQL GAAF+I WN+VVT+ I + I   IPLRM +
Sbjct:   367 ELFSLESTVPGLRGAFYGGGIK-QIGKQLGGAAFVIAWNLVVTTAILLGIGLFIPLRMPD 425

Query:   425 EQLLIGDDAVHGEEAYALWGDGEKYDST 452
             EQL+IGDDA HGEEAYALWGDGEK+D+T
Sbjct:   426 EQLMIGDDAAHGEEAYALWGDGEKFDAT 453
GO:0005886 "plasma membrane" evidence=TAS
GO:0015696 "ammonium transport" evidence=IGI
TAIR|locus:2042917 AMT2 "ammonium transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0073 CHY_0073 "ammonium transporter" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P69681 amtB "AmtB" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1125 DET_1125 "ammonium transporter" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
ASPGD|ASPL0000068402 meaA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2093 SPO_2093 "ammonium transporter" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
CGD|CAL0000712 MEP2 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59UP8 MEP2 "Putative uncharacterized protein MEP2" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|G4MMA1 MGG_16392 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q851M9AMT32_ORYSJNo assigned EC number0.75380.99770.9415nono
Q69T29AMT33_ORYSJNo assigned EC number0.76710.99770.9395nono
Q9M6N7AMT2_ARATHNo assigned EC number0.71140.96460.9178yesno
Q9C0V1AMT1_SCHPONo assigned EC number0.30380.89600.8148yesno
P63520AMT_MYCBONo assigned EC number0.32510.92690.8784yesno
Q07429NRGA_BACSUNo assigned EC number0.34100.87830.9826yesno
O66515AMT_AQUAENo assigned EC number0.35020.88050.9408yesno
P63519AMT_MYCTUNo assigned EC number0.32510.92690.8784yesno
Q84KJ6AMT31_ORYSJNo assigned EC number0.83030.99110.8995yesno
Q84KJ7AMT21_ORYSJNo assigned EC number0.72320.97560.9074nono
O26759Y663_METTHNo assigned EC number0.34790.88930.9757yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrAMT3-1
ammonium transporter (458 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_scaffold_2958000001
Predicted protein (112 aa)
• •   • 0.776
gw1.7911.2.1
annotation not avaliable (425 aa)
  •     0.409

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
TIGR00836403 TIGR00836, amt, ammonium transporter 1e-116
COG0004409 COG0004, AmtB, Ammonia permease [Inorganic ion tra 1e-106
pfam00909399 pfam00909, Ammonium_transp, Ammonium Transporter F 4e-68
PRK10666428 PRK10666, PRK10666, ammonium transporter; Provisio 2e-65
TIGR03644404 TIGR03644, marine_trans_1, probable ammonium trans 5e-36
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information 
 Score =  346 bits (889), Expect = e-116
 Identities = 158/430 (36%), Positives = 228/430 (53%), Gaps = 31/430 (7%)

Query: 15  NAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFG 74
            AW +I+A LV     PG  +LY  +V+ K  +N     L  FA   + W  + Y ++FG
Sbjct: 1   TAWLLIAAALVFFM-QPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFG 59

Query: 75  DKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAA 134
           +   P  G  G   G   L       + +            +    P      FQ +FAA
Sbjct: 60  EDN-PINGFIGT--GGFGLKNFLYPGKIS------------LAGTLPDLLFFLFQMMFAA 104

Query: 135 ITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWG-GGFLFHWGVMDYSGGYVIH 193
           I   I++G+V  RM   A++ F  LW T  Y   A  +WG GG+L+  GV+D++GG V+H
Sbjct: 105 IAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLDFAGGGVVH 164

Query: 194 LSSGIAGFTAAYWVGPRSTKDRE--RFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTANID 251
           +  G+AG  AA  +GPR  +        P+NV +++ G  +LW GW GFN G    AN  
Sbjct: 165 IVGGVAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGT 224

Query: 252 SSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIV 311
           ++ A +NTN+ AA   L W  +D +   KP+++GA  G++ GLV ITPG G+V  W AI+
Sbjct: 225 AAYAAVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAII 284

Query: 312 MGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFL 371
           +G+++G + +  +  + K+     KIDD L  F  H V G+ G + TGLFA PK+  +  
Sbjct: 285 IGLVAGVLCYLAVSKLKKK----LKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGV-- 338

Query: 372 PVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEEQLLIGD 431
                 GG+ GG+G  Q+  QL G A II W  VVT II  I++K I LR++EE+  IG 
Sbjct: 339 ----GTGGLLGGNGK-QLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSEEEEKIGL 393

Query: 432 D-AVHGEEAY 440
           D A HGE AY
Sbjct: 394 DLAEHGEFAY 403

The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf [Transport and binding proteins, Cations and iron carrying compounds]. Length = 403
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 452
COG0004409 AmtB Ammonia permease [Inorganic ion transport and 100.0
KOG0682500 consensus Ammonia permease [Inorganic ion transpor 100.0
PRK10666428 ammonium transporter; Provisional 100.0
TIGR00836403 amt ammonium transporter. The mechanism of energy 100.0
TIGR03644404 marine_trans_1 probable ammonium transporter, mari 100.0
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 100.0
KOG3796442 consensus Ammonium transporter RHBG [Intracellular 100.0
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-111  Score=855.22  Aligned_cols=406  Identities=37%  Similarity=0.687  Sum_probs=374.5

Q ss_pred             ccchhHHHHHHHHHHHHHHhHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccCCCccch
Q 041074           10 LNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALG   89 (452)
Q Consensus        10 ~~~~d~~w~l~~~~lV~~~m~~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~~~   89 (452)
                      +|++|++|+|+|+.|| ++||||++|+|+|++||||++|+++|+++++++++++|+++||+++||++.++|+|+...+  
T Consensus         1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~--   77 (409)
T COG0004           1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQF--   77 (409)
T ss_pred             CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHH--
Confidence            4789999999999999 9999999999999999999999999999999999999999999999998668999987532  


Q ss_pred             hhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccc
Q 041074           90 QKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGA  169 (452)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp~~a  169 (452)
                         +++.....++            ....++|++++++||++||++|++|++|+++||+|+++|++|+++|.+++|||++
T Consensus        78 ---~~~~~~~~~~------------~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~a  142 (409)
T COG0004          78 ---FLNGLGFAAV------------AGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVA  142 (409)
T ss_pred             ---hccCcccccc------------CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Confidence               1111111110            0113589999999999999999999999999999999999999999999999999


Q ss_pred             ceee-ccchhhcccccccCCCeehhhhHHHHHHHHHHHHcccCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCc
Q 041074          170 FSLW-GGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTA  248 (452)
Q Consensus       170 hwvW-~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~~~  248 (452)
                      ||+| ++|||.++|++|||||+|||..+|+.||++++++|||+++.+++++|||++++++|+.+||+||+|||+||+++.
T Consensus       143 hWvWggggwl~~~g~~DFAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~  222 (409)
T COG0004         143 HWVWGGGGWLALLGALDFAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAA  222 (409)
T ss_pred             eeEecCchHHHhcCceecCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhh
Confidence            9999 677999999999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHHHH
Q 041074          249 NIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIH  328 (452)
Q Consensus       249 ~~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~l~  328 (452)
                      +.++..+++||++|+++++++|++++++++||+|+..++||++||||+|||+|++|+||+|++||+++|++|+++.++++
T Consensus       223 ~~~a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk  302 (409)
T COG0004         223 NGVAALAFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLK  302 (409)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             HhhcccCccccccCccccccchhhhhhhhhhhccCcccccccCcccCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 041074          329 KRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTS  408 (452)
Q Consensus       329 ~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~~~~~G~~~g~~~~~ql~~Ql~g~~~~~~~s~~~~~  408 (452)
                      |+    +|+|||+|++++||++|+||++++|+|++++..       ...|.+++  +++|++.|+.+++++.+|++++|+
T Consensus       303 ~~----l~~DD~ld~f~vHGvgGi~G~i~~GiFa~~~~~-------~~~G~~~~--~~~~l~~Q~~~v~~~~~~~~v~t~  369 (409)
T COG0004         303 KK----LGVDDALDVFGVHGVGGIVGAILTGIFAAPAVG-------GGGGLFYG--GGVQLGVQLLGVLVTIVYAFVVTF  369 (409)
T ss_pred             Hh----cCCCCcccceeccchhhHHHHHHHHHhcCcccc-------ccCccccc--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65    699999999999999999999999999998651       12355553  789999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCChHHHhcC-ChhhcCcccccccCCC
Q 041074          409 IICVIINKVIPLRMTEEQLLIG-DDAVHGEEAYALWGDG  446 (452)
Q Consensus       409 i~~~il~~~~~lRv~~e~E~~G-D~~~hg~~ay~~~~~~  446 (452)
                      ++++++|++.+||||||||++| |.+||||++|++.+..
T Consensus       370 ii~~vl~~~~gLRvs~eeE~~GlD~~~Hge~aY~~~~~~  408 (409)
T COG0004         370 IILKVLKLIIGLRVSEEEELEGLDISEHGESAYSEEEAT  408 (409)
T ss_pred             HHHHHHHhccCCCCCHHHHhhCCChHHhccccccccccc
Confidence            9999999999999999999999 9999999999876543

>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10666 ammonium transporter; Provisional Back     alignment and domain information
>TIGR00836 amt ammonium transporter Back     alignment and domain information
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
1xqe_A418 The Mechanism Of Ammonia Transport Based On The Cry 8e-43
2nmr_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 8e-43
2ns1_A412 Crystal Structure Of The E. Coli Ammonia Channel Am 8e-43
2nuu_A415 Regulating The Escherichia Coli Ammonia Channel: Th 2e-42
2now_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 7e-42
3c1i_A424 Substrate Binding, Deprotonation And Selectivity At 8e-42
3c1h_A424 Substrate Binding, Deprotonation And Selectivity At 8e-42
2npc_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-41
2npe_A424 An Unusual Twin-his Arrangement In The Pore Of Ammo 1e-41
2npd_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-41
2npg_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-41
3c1j_A424 Substrate Binding, Deprotonation And Selectivity At 8e-41
2npk_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 2e-40
2b2f_A399 Ammonium Transporter Amt-1 From A.Fulgidus (Native) 1e-35
1u77_A385 Crystal Structure Of Ammonia Channel Amtb From E. C 2e-35
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal Structure Of Amtb Of E. Coli. Length = 418 Back     alignment and structure 
Iteration: 1

 Score =  171 bits (433), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 132/438 (30%), Positives = 199/438 (45%), Gaps = 39/438 (8%)
Query: 7   PDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWAT 66
           P   +K DNA+ MI   LV   ++PG+ + YG +++ K  ++        FA V I W  
Sbjct: 2   PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61
Query: 67  WAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMV 126
           + Y ++FG+             G  F    + L          ++E   V+        V
Sbjct: 62  YGYSLAFGE-------------GNNFFGNINWLMLK-------NIELTAVMGSIYQYIHV 101
Query: 127 WFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDY 186
            FQ  FA IT+ ++ G++  R+   A + FV +WLT SY   A  +WGGG L   G +D+
Sbjct: 102 AFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 187 SGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIXXXXXXXXXXXXXXXFNGGDPY 246
           +GG V+H+++ IAG   AY +G R    +E F P+N+                FN G   
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 247 TANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQG 306
           TAN  +++A +NT +  A ++L W + +     KPS++GA  G I GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 307 WAAIVMGILSGSVP-WFTMMFIHKRWTLLQKIDDTLSVFHTHXXXXXXXXXXXXXFAEPK 365
             A+++G+++G    W   M   KR   L ++DD   VF  H             FA   
Sbjct: 282 GGALIIGVVAGLAGLWGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASS 336
Query: 366 LCSLFLP--VTNSRXXXXXXXXXIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMT 423
           L  +     VT             Q+L QL   A  I W+ VV  I   + +  + LR+ 
Sbjct: 337 LGGVGFAEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVP 386
Query: 424 EEQLLIGDDA-VHGEEAY 440
           EEQ   G D   HGE AY
Sbjct: 387 EEQEREGLDVNSHGENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb Complexed With The Signal Transduction Protein Glnk Length = 412 Back     alignment and structure
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The Crystal Structure Of The Amtb-glnk Complex Length = 415 Back     alignment and structure
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native) Length = 399 Back     alignment and structure
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli Length = 385 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 1e-105
1u7g_A385 Probable ammonium transporter; right handed helica 1e-102
3b9w_A407 Ammonium transporter family; membrane protein, amm 8e-68
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 7e-56
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
 Score =  317 bits (814), Expect = e-105
 Identities = 135/441 (30%), Positives = 212/441 (48%), Gaps = 43/441 (9%)

Query: 10  LNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAY 69
           ++ G+ AW + S  LV +  VPG+   Y  +V++K AVN   ++  +    V+ W  + Y
Sbjct: 1   MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGY 59

Query: 70  KMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQ 129
            +SFG+ +    G          L+      +                        + +Q
Sbjct: 60  SVSFGNDISGIIGGL-----NYALLSGVKGEDLL---------------------FMMYQ 93

Query: 130 CVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGG 189
            +FAA+T+ IL  ++  R  + +++    LWLTF Y   A  LWGGG+L   G +D++GG
Sbjct: 94  MMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWGGGWLAKLGALDFAGG 153

Query: 190 YVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTAN 249
            V+H+SSG A    A  +G R+  +     P+++ + L GA LLW GW GFNGG    AN
Sbjct: 154 MVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAAN 213

Query: 250 IDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAA 309
             +  AV+ TN  AA +  VW  +  I   KP  +G V G I GL  ITP AG V    A
Sbjct: 214 DVAINAVVVTNTSAAVAGFVWMVIGWI-KGKPGSLGIVSGAIAGLAAITPAAGFVDVKGA 272

Query: 310 IVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSL 369
           IV+G+++G V +  M F  K+     KID++L  +  H + GL G V  G+ A P++   
Sbjct: 273 IVIGLVAGIVCYLAMDFRIKK-----KIDESLDAWAIHGIGGLWGSVAVGILANPEV--- 324

Query: 370 FLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRMTEEQLLI 429
                N   G+  G     ++ QL   A    +  +VT I+   ++  + LR++ ++  +
Sbjct: 325 -----NGYAGLLFG-NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYV 378

Query: 430 G-DDAVHGEEAYALWGDGEKY 449
           G D + H E AY L      +
Sbjct: 379 GLDLSQHEEVAYTLEHHHHHH 399
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385 Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query452
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 100.0
1u7g_A385 Probable ammonium transporter; right handed helica 100.0
3b9w_A407 Ammonium transporter family; membrane protein, amm 100.0
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 100.0
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Back     alignment and structure
Probab=100.00  E-value=6.1e-110  Score=855.43  Aligned_cols=397  Identities=34%  Similarity=0.608  Sum_probs=363.3

Q ss_pred             ccchhHHHHHHHHHHHHHHhHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccCCCccch
Q 041074           10 LNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALG   89 (452)
Q Consensus        10 ~~~~d~~w~l~~~~lV~~~m~~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~~~   89 (452)
                      +|++|++|+|+|++|| ++|||||+|+|+|++|+||++|+++||++++++++++||++||+++||++.++|||+.+.++ 
T Consensus         1 ~~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~-   78 (399)
T 2b2h_A            1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYAL-   78 (399)
T ss_dssp             CCHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGG-
T ss_pred             CCcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhh-
Confidence            4789999999999999 89999999999999999999999999999999999999999999999987678999854321 


Q ss_pred             hhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccc
Q 041074           90 QKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGA  169 (452)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp~~a  169 (452)
                          ++..  .                  .-| ..+++||++||++|++|++||++||+|+.+|++|+++|++++|||++
T Consensus        79 ----~~~~--~------------------~~~-~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~a  133 (399)
T 2b2h_A           79 ----LSGV--K------------------GED-LLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFA  133 (399)
T ss_dssp             ----GTTC--C------------------THH-HHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHH
T ss_pred             ----ccCC--C------------------CCc-hhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhh
Confidence                1110  0                  012 67999999999999999999999999999999999999999999999


Q ss_pred             ceeeccchhhcccccccCCCeehhhhHHHHHHHHHHHHcccCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCcC
Q 041074          170 FSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTAN  249 (452)
Q Consensus       170 hwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~~~~  249 (452)
                      ||+|++|||.++|++|||||++||++||++||++++++|||++|++++++|||++++++|+++||+||||||+||++..+
T Consensus       134 hwvW~~GwL~~lG~~DFAGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~  213 (399)
T 2b2h_A          134 HWLWGGGWLAKLGALDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAAN  213 (399)
T ss_dssp             HHHHSSCHHHHTTCCCSSCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSS
T ss_pred             hheECchhHHhcCCccccCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhcccc
Confidence            99999999999999999999999999999999999999999998888999999999999999999999999999999988


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHHHHH
Q 041074          250 IDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFIHK  329 (452)
Q Consensus       250 ~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~l~~  329 (452)
                      .+++++++||++|+++|+++|+++++++ ||+|+..++||+|||||+|||+|++++||+|++||+++|++|+++.+ +++
T Consensus       214 ~~a~~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~-l~~  291 (399)
T 2b2h_A          214 DVAINAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMD-FRI  291 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            8899999999999999999999999999 99999999999999999999999999999999999999999999883 333


Q ss_pred             hhcccCccccccCccccccchhhhhhhhhhhccCcccccccCcccCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 041074          330 RWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSI  409 (452)
Q Consensus       330 ~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~~~~~G~~~g~~~~~ql~~Ql~g~~~~~~~s~~~~~i  409 (452)
                          |+|||||||++++||+||+||++++|+|++++..       +.+|++|+  +.+|++.|++|++++++|+++.+++
T Consensus       292 ----kl~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~-------g~~Gl~~g--~~~ql~~Ql~g~~~~~~~~~v~~~i  358 (399)
T 2b2h_A          292 ----KKKIDESLDAWAIHGIGGLWGSVAVGILANPEVN-------GYAGLLFG--NPQLLVSQLIAVASTTAYAFLVTLI  358 (399)
T ss_dssp             ----HTTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHH-------SCCCGGGT--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HcCCCCCCCceeccchhhHHHHHHHHHHcccccc-------CCCccccC--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                4799999999999999999999999999987542       12577785  5799999999999999999999999


Q ss_pred             HHHHHHHhcCCCCChHHHhcC-ChhhcCcccccccCCCCC
Q 041074          410 ICVIINKVIPLRMTEEQLLIG-DDAVHGEEAYALWGDGEK  448 (452)
Q Consensus       410 ~~~il~~~~~lRv~~e~E~~G-D~~~hg~~ay~~~~~~~~  448 (452)
                      +++++|++.+||++||||++| |.+||||++||+.+.+.|
T Consensus       359 ~~~il~~~~glRv~~e~E~~GlD~~~hg~~ay~~~~~~~~  398 (399)
T 2b2h_A          359 LAKAVDAAVGLRVSSQEEYVGLDLSQHEEVAYTLEHHHHH  398 (399)
T ss_dssp             HHHHHHHHTCSBCCHHHHHHCHHHHHHCCCSCC-------
T ss_pred             HHHHHHhcccCCCCHHHHHhCCCHHHhCcccCCccccccC
Confidence            999999999999999999999 999999999998665443
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 452
d1u7ga_383 f.44.1.1 (A:) Ammonium transporter AmtB {Escherich 6e-58
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Length = 383 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

 Score =  193 bits (491), Expect = 6e-58
 Identities = 124/413 (30%), Positives = 204/413 (49%), Gaps = 32/413 (7%)

Query: 10  LNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAY 69
            +K DNA+ MI   LV   ++PG+ + YG +++ K  ++        FA V I W  + Y
Sbjct: 3   ADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGY 62

Query: 70  KMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQ 129
            ++ G+    F                        +    ++E   V+        V FQ
Sbjct: 63  SLASGEGNNFFGN--------------------INWLMLKNIELTAVMGSIYQYIHVAFQ 102

Query: 130 CVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGG 189
             FA IT+ ++ G++  R+   A + FV +WLT SY   A  +WGGG L   G +D++GG
Sbjct: 103 GSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGG 162

Query: 190 YVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYTAN 249
            V+H+++ IAG   AY +G R    +E F P+N+ M+  G  +L++GW GFN G   TAN
Sbjct: 163 TVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTAN 222

Query: 250 IDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAA 309
             +++A +NT +  A ++L W + +      PS++GA  G I GLV +TP  G +    A
Sbjct: 223 EIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGA 282

Query: 310 IVMGILSGSVPWFTMMFIHKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSL 369
           +++G+++G    + +  + +      ++DD   VF  H V G++G ++TG+FA   L   
Sbjct: 283 LIIGVVAGLAGLWGVTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL--- 335

Query: 370 FLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVTSIICVIINKVIPLRM 422
                   G   G + G Q+L QL   A  I W+ VV  I   + +  + LR+
Sbjct: 336 -----GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query452
d1u7ga_383 Ammonium transporter AmtB {Escherichia coli [TaxId 100.0
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-94  Score=735.68  Aligned_cols=381  Identities=33%  Similarity=0.592  Sum_probs=348.1

Q ss_pred             cccchhHHHHHHHHHHHHHHhH-HHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccCCCcc
Q 041074            9 WLNKGDNAWQMISATLVGLQSV-PGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPA   87 (452)
Q Consensus         9 ~~~~~d~~w~l~~~~lV~~~m~-~Gfalle~G~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~   87 (452)
                      ..|++|++|+++|++|| ++|| |||+|+|+|++|+||++|+++||++++++++++||++||+++||++ ++++|..++.
T Consensus         2 ~~d~~d~~~~l~~~~lV-~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~-~~~~g~~~~~   79 (383)
T d1u7ga_           2 VADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWL   79 (383)
T ss_dssp             CCCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTG
T ss_pred             CcCcccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHheeeEeEEeEcCCC-CCcCCCcchh
Confidence            46899999999999999 7786 8999999999999999999999999999999999999999999986 5677776543


Q ss_pred             chhhhhhhcCCCCCCccccCCCcccccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcc
Q 041074           88 LGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTV  167 (452)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~I~~GavaeR~~~~~~~i~~~l~~~~vYp~  167 (452)
                      ..     ..  .+.            ...+..+|++.+++||++||+++++|++|+++||+|+++|++|+++|++++|||
T Consensus        80 ~~-----~~--~~~------------~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~  140 (383)
T d1u7ga_          80 ML-----KN--IEL------------TAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIP  140 (383)
T ss_dssp             GG-----TT--CCT------------TCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHH
T ss_pred             hc-----cC--ccc------------ccccccchhhHHhHhhhhhhhhhccccccccccccceeEeeehhhHhhhhccch
Confidence            21     11  110            012345789999999999999999999999999999999999999999999999


Q ss_pred             ccceeeccchhhcccccccCCCeehhhhHHHHHHHHHHHHcccCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhccCCCCC
Q 041074          168 GAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSTKDRERFPPNNVIMMLAGAGLLWMGWAGFNGGDPYT  247 (452)
Q Consensus       168 ~ahwvW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~n~~~~~lG~~lLw~gW~gFN~gs~~~  247 (452)
                      ++||+|++|||+++|++||+||++||++||+++|++++++|||++|++++.+|||++++.+|+++||+||+|||+||+..
T Consensus       141 ~~hwvw~~g~l~~lG~~DfaGs~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~  220 (383)
T d1u7ga_         141 IAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGT  220 (383)
T ss_dssp             HHHHHHSSCHHHHHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSS
T ss_pred             HHheecCCCccccCCceeccCceeeeecccHHHHHHHHhcCCcccccccccccCChhhhhHHHHHHHHHHHHhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHhhhhhhhcccccccCCCCCcchHHHHHHHHhhchhhHHHHHHH
Q 041074          248 ANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSVPWFTMMFI  327 (452)
Q Consensus       248 ~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~a~~v~p~~A~iiG~iag~i~~~~~~~l  327 (452)
                      .+....++.+||.+|+++++++++..+++.+||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++++++
T Consensus       221 ~~~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l  300 (383)
T d1u7ga_         221 ANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTML  300 (383)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHhhcccCccccccCccccccchhhhhhhhhhhccCcccccccCcccCCCCccccCCchhHHHHHHHHHHHHHHHHHHHH
Q 041074          328 HKRWTLLQKIDDTLSVFHTHAVAGLLGGVLTGLFAEPKLCSLFLPVTNSRGGVYGGSGGIQILKQLAGAAFIIGWNVVVT  407 (452)
Q Consensus       328 ~~~l~~~l~IDD~~~v~~vHg~~Gi~G~i~~g~fa~~~~~~~~~~~~~~~G~~~g~~~~~ql~~Ql~g~~~~~~~s~~~~  407 (452)
                      ++|    +|||||+|++++||+||+||++++|+|++++..+..+        ..+...++|++.|++|++++++|+++.+
T Consensus       301 ~~~----~~iDD~~~~~~vHg~~Gi~G~l~~glfa~~~~~g~~~--------~~~~~~~~ql~~Ql~g~~v~~~~~~~~~  368 (383)
T d1u7ga_         301 KRL----LRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGF--------AEGVTMGHQLLVQLESIAITIVWSGVVA  368 (383)
T ss_dssp             HHH----HCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTCCCC--------CTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhh----cccccccceEeehhhhHHHHHHHHHHhcCcccccccc--------ccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            654    6999999999999999999999999999986543221        1122357899999999999999999999


Q ss_pred             HHHHHHHHHhcCCCC
Q 041074          408 SIICVIINKVIPLRM  422 (452)
Q Consensus       408 ~i~~~il~~~~~lRv  422 (452)
                      +++++++|++.+|||
T Consensus       369 ~ii~~il~~~~gLRV  383 (383)
T d1u7ga_         369 FIGYKLADLTVGLRV  383 (383)
T ss_dssp             HHHHHHHHHHTCSBC
T ss_pred             HHHHHHHHhCcCCcC
Confidence            999999999999997