Citrus Sinensis ID: 041172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MDVLGVQQMKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAHRFSDTNSADDQNSPKVVVDQGLACAVSGDDHQQGDLRSSPSMEDQFDDLFMPHGEGSFLGMFTSNLFHHDFNFQQDLAL
Secondary Structure (PSIPRED)
cccccHHHHHHccccccccccccccEEEEEcccEEEEEcHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHccccccccccccccccEEEEEEccccEEEccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDVLGVQQMKIRkhnnyykrckKDVKVVYISSPVKFETCASKFRALVQELtgkdsdadaaahrfsdtnsaddqnspkvvVDQGlacavsgddhqqgdlrsspsmedqfddlfmphgegsflgmftsnlfhhdfnfqqdlal
Flexible Loop (DISEMBL)
mdvlgvqqmkirkhnnyykrckkdVKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAHRFsdtnsaddqnspKVVVDQGLACAVSGDDHQQGDLRSSPSMEDQFDDLFMPHGEGSFLGMFTSNLFHHDFNFQQDLAL
Low Complexity Region (SEG)
MDVLGVQQMKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAHRFSDTNSADDQNSPKVVVDQGLACAVSGDDHQQGDLRSSPSMEDQFDDLFMPHGEGSFLGMFTSNLFHHDFNFQQDLAL
Disordered region (IsUnstruct)
********MKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQE*************************************************************LFMPHGEGSFLGMFTSNLFHHDFNF******
Disordered Region (DISOPRED)
**************************VVYISSPVKFETCASKFRALVQELTGK*********************************************************LFMPHGEGSFLGMFTSNLFHHDFNFQQDLAL
Disordered Region (DISEMBL)
MDVLGVQQMKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAHRFSDTNSADDQNSPKVVVDQGLACAVS************PSMEDQFDDLFMPHGEGSFLGMFTSNLFHHDFNFQQDLAL
Disordered Region (DISPRO)
*********************KKDVKVVYISSPVKFETCASKFRALVQELTGKD****************************************************QFDDLFMPHGEGSFLGMFTSNLFHHDFNFQQDLAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDVLGVQQMKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAHRFSDTNSADDQNSPKVVVDQGLACAVSGDDHQQGDLRSSPSMEDQFDDLFMPHGEGSFLGMFTSNLFHHDFNFQQDLAL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q9LDH1	151	Sigma factor binding prot	yes	no	0.723	0.675	0.369	4e-07
O80669	141	Sigma factor binding prot	no	no	0.234	0.234	0.666	7e-07

>sp|Q9LDH1|SIB1_ARATH Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 9/111 (8%)

Query: 23  KDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAHRFSDTNSADDQNSPKVVVDQ 82
           K +KV YIS+P++ +TCASKFR LVQELTG+D+  D         +S D   SP     +
Sbjct: 38  KPIKVRYISNPMRVQTCASKFRELVQELTGQDA-VDLQPEPIYSPSSDDHNLSPPA---E 93

Query: 83  GLACAVSGDDHQQ--GDLRSSPSMEDQFDDLFMPHGEGSFLGMFTSNLFHH 131
            LA  V    HQ+  G+  S        +D+F+P    +    F SN F++
Sbjct: 94  NLAPRVL---HQEPFGERDSDCYEPLNAEDMFLPDQMSAGFSGFFSNGFYN 141

Contributes to plant defense. May regulate chloroplast metabolism upon infection with necrotrophic pathogens such as Pseudomonas syringae.
Arabidopsis thaliana (taxid: 3702)

>sp|O80669|SIB2_ARATH Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 28/33 (84%)

Query: 23 KDVKVVYISSPVKFETCASKFRALVQELTGKDS 55
          K +KV YIS+P++ ETC SKFR LVQELTG+D+
Sbjct: 35 KPIKVRYISNPMRVETCPSKFRELVQELTGQDA 67

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
255543933	143	protein with unknown function [Ricinus c	0.872	0.860	0.455	2e-18
224072929	138	predicted protein [Populus trichocarpa]	0.914	0.934	0.457	3e-17
224137696	156	predicted protein [Populus trichocarpa]	0.886	0.801	0.375	1e-11
224089971	154	predicted protein [Populus trichocarpa]	0.907	0.831	0.364	6e-10
147774033	124	hypothetical protein VITISV_025656 [Viti	0.666	0.758	0.443	1e-08
388493616	120	unknown [Lotus japonicus]	0.460	0.541	0.5	2e-08
270309002	146	sigma factor binding protein 1 [Citrullu	0.851	0.821	0.372	1e-07
351721456	123	uncharacterized protein LOC100306482 [Gl	0.333	0.382	0.632	3e-07
356556796	122	PREDICTED: uncharacterized protein LOC10	0.333	0.385	0.612	8e-07
357515269	118	hypothetical protein MTR_8g040080 [Medic	0.319	0.381	0.644	9e-07

>gi|255543933|ref|XP_002513029.1| protein with unknown function [Ricinus communis] gi|223548040|gb|EEF49532.1| protein with unknown function [Ricinus communis]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 79/147 (53%), Gaps = 24/147 (16%)

Query: 1   MDVLGVQQMKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAA 60
           MDVLGV  MK RK  +  KR KK +KVVYISSP+K ET ASKFRALVQELTGKDSD    
Sbjct: 1   MDVLGVN-MKSRKQAS--KRSKKGIKVVYISSPMKVETSASKFRALVQELTGKDSD---- 53

Query: 61  AHRFSDTNSADDQNSPKVVVDQGLACAVSGDDHQQGDLRSSPSMEDQFD----------- 109
           A RF D N+  +  S +   D+  A +   D+H    L    S  +              
Sbjct: 54  AARFMDVNNGAENYSTETTPDRSRAAS---DEHGSVLLPLMSSYNEPSFSSSPDSDSSIF 110

Query: 110 ---DLFMPHGEGSFLGMFTSNLFHHDF 133
              D F+P  EGSF+ MF SN  H  F
Sbjct: 111 DPFDRFLPPMEGSFMSMFQSNFPHESF 137

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072929|ref|XP_002303937.1| predicted protein [Populus trichocarpa] gi|222841369|gb|EEE78916.1| predicted protein [Populus trichocarpa]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/140 (45%), Positives = 76/140 (54%), Gaps = 11/140 (7%)

Query: 1   MDVLGVQQMKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAA 60
           MDVLG   MK  K + + KR KK +KVVYISSP+K +T ASKFRALVQELTGKDSDA+  
Sbjct: 1   MDVLGAN-MKSGKRS-HTKRGKKAIKVVYISSPMKVKTSASKFRALVQELTGKDSDAE-- 56

Query: 61  AHRFSDTNSADDQ-NSPKVVVD----QGLACAVSGDDHQQGDLRSSPSMEDQFDDLFMPH 115
             RF D N A D    P    +      +    +  + Q     SS S     D  F P 
Sbjct: 57  --RFMDINGARDSLEIPHQTAEYDHHPSVFPLTNSCNDQSPSTTSSESFLGSLDGEFFPS 114

Query: 116 GEGSFLGMFTSNLFHHDFNF 135
            EGSF+GM   +LFH  F  
Sbjct: 115 MEGSFMGMLQPSLFHESFQL 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137696|ref|XP_002322621.1| predicted protein [Populus trichocarpa] gi|222867251|gb|EEF04382.1| predicted protein [Populus trichocarpa]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 71/141 (50%), Gaps = 16/141 (11%)

Query: 5   GVQQMKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAHRF 64
           GVQ+   RK     K  KK +KVVYIS+P+KF+  AS FRALVQELTG+DS+        
Sbjct: 12  GVQE---RKGTKIAKTKKKPMKVVYISNPMKFKISASGFRALVQELTGQDSELPDPTKIV 68

Query: 65  SD------TNSADDQNSPKVVVDQGLACAVSGDDHQQGDLRSSPSMED----QFDDLFMP 114
            D       N     N+ K VVD   A  V   D  Q      P+ +D     FDD+FMP
Sbjct: 69  DDDDHGVGGNYRTVSNASKTVVDDHCALEVPTKDPSQ---EQPPARQDAPFGSFDDVFMP 125

Query: 115 HGEGSFLGMFTSNLFHHDFNF 135
               +  G+  SN ++  +++
Sbjct: 126 QMLENVAGIMPSNSWYEAYSY 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089971|ref|XP_002308886.1| predicted protein [Populus trichocarpa] gi|222854862|gb|EEE92409.1| predicted protein [Populus trichocarpa]

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 5   GVQQMKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAHRF 64
           GVQ+ K  +      + KK +KVVYIS+P+KF+  AS+FRALVQELTG+DS+    + +F
Sbjct: 12  GVQEKKAHRIAGTGTK-KKPMKVVYISNPMKFKASASEFRALVQELTGQDSELPDPS-KF 69

Query: 65  SDTNSAD----------DQNSPKVVVDQGLACAVSGDDHQQGDLRSSPSMEDQFDDLFMP 114
            D++  D             S  VVVD G A  V  +D  Q       +  + FDD+FMP
Sbjct: 70  VDSDGHDRDVGGNYQTVPNASKSVVVDGGHAQEVPIEDPSQVQPERQDAPFESFDDVFMP 129

Query: 115 HGEGSFLGMFTSNLFHHDFN 134
                      S L++  +N
Sbjct: 130 QMLEDISEKMPSKLWYEAYN 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774033|emb|CAN69541.1| hypothetical protein VITISV_025656 [Vitis vinifera]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 60/106 (56%), Gaps = 12/106 (11%)

Query: 25  VKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAHRFSDTNSADDQNSPKVVVDQGL 84
           VKVVYISSP+K +T ASKFRALVQELTG+DSD +    R+ + N   +++   V+ DQGL
Sbjct: 12  VKVVYISSPMKVKTSASKFRALVQELTGRDSDVE----RYME-NKEREESRKMVMGDQGL 66

Query: 85  ACAVSGDDHQQGDLRSSPSMEDQFD-DLFMPHGEGSFLGMFTSNLF 129
                  DH      S   +   FD D FMP  E   +GM   + F
Sbjct: 67  GAV----DHSS--SSSESLLFGLFDMDSFMPREEEGSVGMMFPSSF 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493616|gb|AFK34874.1| unknown [Lotus japonicus]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 3  VLGVQQMKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAH 62
          +LGV    + K     K+ KK++KV YISSP+K +T AS FRALVQELTG+DS+    A 
Sbjct: 1  MLGVSNNHVMKGKRQGKKNKKEIKVTYISSPMKVKTSASNFRALVQELTGQDSN---VAE 57

Query: 63 RFSDTNSA 70
           F + N A
Sbjct: 58 TFVEANGA 65

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270309002|dbj|BAI52954.1| sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris]

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 71/145 (48%), Gaps = 25/145 (17%)

Query: 1   MDVLGVQQMKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAA 60
           M+V G +Q K  +     K    D KVVYISSP+K +T ASKFR+LVQ LTG+DSDA+  
Sbjct: 1   MNVTGKKQAKRSR-----KSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAE-- 53

Query: 61  AHRFSD--TNSADDQNSPKVVVDQGLACAVSGDDH-------QQGDLRSSPSMEDQFDDL 111
             RF +   ++A D+N             + GDD        +     SS +     DDL
Sbjct: 54  --RFMELTASAASDRNLQSSASATFFDYQLLGDDDLVVAGKVETAAYESSVAALPPPDDL 111

Query: 112 FMPHG-EGSFLGMFTSNLFHHDFNF 135
            + H  + SF GMF      H F F
Sbjct: 112 AVLHNLDASFGGMF------HGFWF 130

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721456|ref|NP_001235674.1| uncharacterized protein LOC100306482 [Glycine max] gi|255628679|gb|ACU14684.1| unknown [Glycine max]

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 38/49 (77%), Gaps = 2/49 (4%)

Query: 9  MKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDA 57
          MK ++ +N  KR KKD+KV YISSPVK +T AS FRALVQELTG+ S+ 
Sbjct: 1  MKNKRASN--KRDKKDIKVTYISSPVKVKTSASNFRALVQELTGQYSNV 47

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556796|ref|XP_003546708.1| PREDICTED: uncharacterized protein LOC100783939 [Glycine max]

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 38/49 (77%), Gaps = 2/49 (4%)

Query: 9  MKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDA 57
          MK ++ +N  KR KK++KV YISSPVK +T AS FRALVQELTG+ S+ 
Sbjct: 1  MKNKRASN--KRDKKEIKVTYISSPVKVKTSASNFRALVQELTGQYSNV 47

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515269|ref|XP_003627923.1| hypothetical protein MTR_8g040080 [Medicago truncatula] gi|355521945|gb|AET02399.1| hypothetical protein MTR_8g040080 [Medicago truncatula]

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 35/45 (77%)

Query: 13 KHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDA 57
          K+    K+ KKD+KV YISSPVK +T AS FRALVQELTG+DS+ 
Sbjct: 2  KNKRMSKKDKKDIKVTYISSPVKVKTNASNFRALVQELTGQDSNV 46

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2103580	151	SIB1 "sigma factor binding pro	0.730	0.682	0.379	3.2e-10
TAIR|locus:2063270	141	SIB2 "AT2G41180" [Arabidopsis	0.248	0.248	0.666	2.9e-07

TAIR|locus:2103580 SIB1 "sigma factor binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 44/116 (37%), Positives = 63/116 (54%)

Query:    23 KDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAHRFSDTNSADDQNSPKVVVDQ 82
             K +KV YIS+P++ +TCASKFR LVQELTG+D+  D         +S D   SP     +
Sbjct:    38 KPIKVRYISNPMRVQTCASKFRELVQELTGQDA-VDLQPEPIYSPSSDDHNLSPPA---E 93

Query:    83 GLACAVSGDDHQQ--GDLRSSPSMED-QFDDLFMPHG-EGSFLGMFTSNLFH-HDF 133
              LA  V    HQ+  G+ R S   E    +D+F+P      F G F++  ++ +DF
Sbjct:    94 NLAPRVL---HQEPFGE-RDSDCYEPLNAEDMFLPDQMSAGFSGFFSNGFYNVNDF 145

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

GO:0071482 "cellular response to light stimulus" evidence=IEP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2063270 SIB2 "AT2G41180" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query:    23 KDVKVVYISSPVKFETCASKFRALVQELTGKDSDAD 58
             K +KV YIS+P++ ETC SKFR LVQELTG+D+ AD
Sbjct:    35 KPIKVRYISNPMRVETCPSKFRELVQELTGQDA-AD 69


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      141       141   0.00091  102 3  11 22  0.43    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  139 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.87u 0.17s 16.04t   Elapsed:  00:00:01
  Total cpu time:  15.87u 0.17s 16.04t   Elapsed:  00:00:01
  Start:  Fri May 10 01:11:24 2013   End:  Fri May 10 01:11:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
pfam05678	31	pfam05678, VQ, VQ motif	7e-06

>gnl|CDD|114404 pfam05678, VQ, VQ motif

 Score = 40.1 bits (95), Expect = 7e-06
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 29 YISSPVKFETCASKFRALVQELTGKDSDADA 59
          Y + P    T  + FRALVQ LTG  +   A
Sbjct: 1  YRAPPTVIHTDPANFRALVQRLTGAPAAPAA 31

This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors (Bateman A pers. obs.). Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PF05678	31	VQ: VQ motif; InterPro: IPR008889 This short motif	99.32

>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins

Probab=99.32  E-value=1.2e-12  Score=79.53  Aligned_cols=30  Identities=50%  Similarity=0.627  Sum_probs=27.6

Q ss_pred             EecCceEEeechhhHHHHHHHHhCCCCCcc
Q 041172           29 YISSPVKFETCASKFRALVQELTGKDSDAD   58 (141)
Q Consensus        29 yI~np~~VkT~As~FRalVQeLTGkds~~~   58 (141)
                      |+.+|++|+||+++||+|||+|||+++.++
T Consensus         1 ~~~~p~vi~~d~~~Fr~lVQ~LTG~~~~~~   30 (31)
T PF05678_consen    1 YRSPPTVIHTDPSNFRALVQRLTGAPSAPA   30 (31)
T ss_pred             CCCCCEEEEeCHHHHHHHHHHhHCcCCCCC
Confidence            577999999999999999999999999763

These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00