Citrus Sinensis ID: 041195

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE
Secondary Structure (PSIPRED)
cccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccHHHEEEEEHccc
Coil and Loop (DISEMBL)
pwetykadlsinvtkhhkpenyrdkFAYWTVQAlkfpthlffQRRHMCHAMLLETvgavpgmvggMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDlengsfenapapaiaidywrlppdstlrDVVVVIRADE
Flexible Loop (DISEMBL)
pwetykadlsinvtkhhkpenyRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIaidywrlppdstLRDVVVVIRADE
Low Complexity Region (SEG)
PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE
Disordered region (IsUnstruct)
********LSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLK***************************************
Disordered Region (DISOPRED)
PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE
Disordered Region (DISEMBL)
PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE
Disordered Region (DISPRO)
PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q8LEE7	318	Ubiquinol oxidase 3, mito	yes	no	1.0	0.613	0.835	2e-97
Q40578	297	Ubiquinol oxidase 2, mito	N/A	no	1.0	0.656	0.805	4e-93
Q41224	353	Ubiquinol oxidase 1, mito	N/A	no	1.0	0.552	0.784	3e-91
Q39219	354	Ubiquinol oxidase 1a, mit	no	no	1.0	0.550	0.764	3e-90
O23913	325	Ubiquinol oxidase 1b, mit	no	no	1.0	0.6	0.764	2e-89
Q07185	321	Ubiquinol oxidase 1, mito	yes	no	1.0	0.607	0.748	1e-87
O22048	329	Ubiquinol oxidase 1c, mit	no	no	1.0	0.592	0.733	6e-86
P22185	349	Ubiquinol oxidase 1, mito	N/A	no	1.0	0.558	0.743	2e-85
Q40294	318	Ubiquinol oxidase, mitoch	N/A	no	1.0	0.613	0.723	1e-84
O22049	353	Ubiquinol oxidase 2, mito	no	no	1.0	0.552	0.723	3e-84

>sp|Q8LEE7|AOX3_ARATH Ubiquinol oxidase 3, mitochondrial OS=Arabidopsis thaliana GN=AOX3 PE=2 SV=2

 Score =  354 bits (909), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 163/195 (83%), Positives = 179/195 (91%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PW++YK D+SI+VTKHHKP N+ DKFAYWTVQ LK P  LFFQR+HMCHAMLLETV AVP
Sbjct: 94  PWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVP 153

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLH KSLR+FEHSGGWIKALLEEAENERMHLMTFIEL++P+WYERA+VF VQGV
Sbjct: 154 GMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGV 213

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFLAY+ SPKLAHRI GYLEEEAVNSYTEFLKD++ G FEN+PAPAIAIDYWRLP 
Sbjct: 214 FFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPK 273

Query: 181 DSTLRDVVVVIRADE 195
           D+TLRDVV VIRADE
Sbjct: 274 DATLRDVVYVIRADE 288

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q40578|AOX2_TOBAC Ubiquinol oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2 PE=1 SV=2

 Score =  340 bits (872), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 157/195 (80%), Positives = 178/195 (91%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETYKADLSI++TKHH P  + DKFAYWTV+AL++PT +FFQRR+ C AM+LETV AVP
Sbjct: 73  PWETYKADLSIDLTKHHAPTTFLDKFAYWTVKALRYPTDIFFQRRYGCRAMMLETVAAVP 132

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLHCKSLR+FE SGGWIKALLEEAENERMHLMTF+E+A+P WYERALVFAVQGV
Sbjct: 133 GMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYERALVFAVQGV 192

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           F NAYF+ YL SPKLAHRIVGYLEEEA++SYTEFLK+L+ G+ EN PAPAIAIDYWRLP 
Sbjct: 193 FINAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPK 252

Query: 181 DSTLRDVVVVIRADE 195
           DSTLRDVV+V+RADE
Sbjct: 253 DSTLRDVVLVVRADE 267

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q41224|AOX1_TOBAC Ubiquinol oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1

 Score =  334 bits (856), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 153/195 (78%), Positives = 176/195 (90%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETYKADLSI++TKHH P  + DKFAYWTV++L++PT +FFQRR+ C AM+LETV AVP
Sbjct: 129 PWETYKADLSIDLTKHHAPTTFLDKFAYWTVKSLRYPTDIFFQRRYGCRAMMLETVAAVP 188

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLHCKSLR+FE SGGWIK LL+EAENERMHLMTF+E+A+P WYERALVFAVQGV
Sbjct: 189 GMVGGMLLHCKSLRRFEQSGGWIKTLLDEAENERMHLMTFMEVAKPNWYERALVFAVQGV 248

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYF+ YL SPKLAHRIVGYLEEEA++SYTEFLK+L+ G+ EN PAPAIAIDY RLP 
Sbjct: 249 FFNAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYCRLPK 308

Query: 181 DSTLRDVVVVIRADE 195
           DSTL DVV+V+RADE
Sbjct: 309 DSTLLDVVLVVRADE 323

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q39219|AOX1A_ARATH Ubiquinol oxidase 1a, mitochondrial OS=Arabidopsis thaliana GN=AOX1A PE=1 SV=2

 Score =  330 bits (847), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 149/195 (76%), Positives = 175/195 (89%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETYKAD++I++ KHH P  + D+ AYWTV++L++PT LFFQRR+ C AM+LETV AVP
Sbjct: 130 PWETYKADITIDLKKHHVPTTFLDRIAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 189

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLHCKSLR+FE SGGWIKALLEEAENERMHLMTF+E+A+P+WYERALV  VQGV
Sbjct: 190 GMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGV 249

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFL YL SPK AHR+VGYLEEEA++SYTEFLK+L+ G+ EN PAPAIAIDYWRLP 
Sbjct: 250 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPA 309

Query: 181 DSTLRDVVVVIRADE 195
           D+TLRDVV+V+RADE
Sbjct: 310 DATLRDVVMVVRADE 324

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O23913|AOX1B_ARATH Ubiquinol oxidase 1b, mitochondrial OS=Arabidopsis thaliana GN=AOX1B PE=1 SV=1

 Score =  328 bits (841), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 149/195 (76%), Positives = 174/195 (89%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETYK+DL+I++ KHH P    DK AYWTV++L++PT LFFQRR+ C AM+LETV AVP
Sbjct: 101 PWETYKSDLTIDLKKHHVPSTLPDKLAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 160

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGML+HCKSLR+FE SGGWIKALLEEAENERMHLMTF+E+A+P WYERALV AVQG+
Sbjct: 161 GMVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYERALVIAVQGI 220

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFL YL SPK AHR+VGYLEEEA++SYTEFLK+L+NG+ EN PAPAIAIDYWRL  
Sbjct: 221 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAIDYWRLEA 280

Query: 181 DSTLRDVVVVIRADE 195
           D+TLRDVV+V+RADE
Sbjct: 281 DATLRDVVMVVRADE 295

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q07185|AOX1_SOYBN Ubiquinol oxidase 1, mitochondrial OS=Glycine max GN=AOX1 PE=1 SV=1

 Score =  322 bits (824), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 146/195 (74%), Positives = 170/195 (87%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PW TYKADLSI++ KH  P  + DK A+WTV+ L++PT +FFQRR+ C AM+LETV AVP
Sbjct: 97  PWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKVLRYPTDVFFQRRYGCRAMMLETVAAVP 156

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMV GMLLHCKSLR+FEHSGGW KALLEEAENERMHLMTF+E+A+P+WYERALV  VQGV
Sbjct: 157 GMVAGMLLHCKSLRRFEHSGGWFKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGV 216

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFL YL SPK AHR+ GYLEEEA++SYTEFLK+L+ G+ EN PAPAIAIDYW+LPP
Sbjct: 217 FFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWQLPP 276

Query: 181 DSTLRDVVVVIRADE 195
            STLRDVV+V+RADE
Sbjct: 277 GSTLRDVVMVVRADE 291

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O22048|AOX1C_ARATH Ubiquinol oxidase 1c, mitochondrial OS=Arabidopsis thaliana GN=AOX1C PE=1 SV=1

 Score =  316 bits (810), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 143/195 (73%), Positives = 172/195 (88%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETYKADL+I++ KHH P    DK AYW V++L++PT LFFQRR+ C A++LETV AVP
Sbjct: 105 PWETYKADLTIDLKKHHVPSTLPDKIAYWMVKSLRWPTDLFFQRRYGCRAIMLETVAAVP 164

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGML+H KSLR+FE SGGWIKALLEEAENERMHLMTF+E+A+P+WYERALV +VQGV
Sbjct: 165 GMVGGMLMHFKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVISVQGV 224

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAY + Y+ SPK AHR+VGYLEEEA++SYTEFLK+L+NG+ EN PAPAIA+DYWRL  
Sbjct: 225 FFNAYLIGYIISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAVDYWRLEA 284

Query: 181 DSTLRDVVVVIRADE 195
           D+TLRDVV+V+RADE
Sbjct: 285 DATLRDVVMVVRADE 299

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P22185|AOX1_TYPVN Ubiquinol oxidase 1, mitochondrial OS=Typhonium venosum GN=AOX1 PE=1 SV=1

 Score =  315 bits (806), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 145/195 (74%), Positives = 172/195 (88%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETY+ADLSI++ KHH P    DK A  TV+AL++PT +FFQRR+ C AM+LETV AVP
Sbjct: 125 PWETYQADLSIDLHKHHVPTTILDKLALRTVKALRWPTDIFFQRRYACRAMMLETVAAVP 184

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGG+LLH KSLR+FEHSGGWI+ALLEEAENERMHLMTF+E+A+P+WYERALV AVQGV
Sbjct: 185 GMVGGVLLHLKSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAQPRWYERALVLAVQGV 244

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFL YL SPK AHR+VGYLEEEA++SYTEFLKD+++G+ ++ PAPAIA+DYWRLP 
Sbjct: 245 FFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLKDIDSGAIQDCPAPAIALDYWRLPQ 304

Query: 181 DSTLRDVVVVIRADE 195
            STLRDVV V+RADE
Sbjct: 305 GSTLRDVVTVVRADE 319

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures. In S.guttatum the alternative respiratory pathway is thermogenic.

Typhonium venosum (taxid: 4463)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q40294|AOX1_MANIN Ubiquinol oxidase, mitochondrial OS=Mangifera indica GN=AOMI 1 PE=1 SV=2

 Score =  311 bits (798), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 141/195 (72%), Positives = 170/195 (87%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETY++DLSI++ KHH P  + DKFAY TV+ L+ PT +FFQRR+ C AM+LETV AVP
Sbjct: 94  PWETYRSDLSIDLKKHHVPRTFMDKFAYRTVKILRVPTDIFFQRRYGCRAMMLETVAAVP 153

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLH KSLRK E SGGWIKALLEEAENERMHLMT +EL +P+WYER LV AVQGV
Sbjct: 154 GMVGGMLLHLKSLRKLEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERLLVLAVQGV 213

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFN++F+ Y+ SPKLAHRIVGYLEEEA++SYTE+LKD+++G+ +N PAPAIAIDYWRLP 
Sbjct: 214 FFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTEYLKDIDSGAIKNIPAPAIAIDYWRLPK 273

Query: 181 DSTLRDVVVVIRADE 195
           D+TL+DV+ V+RADE
Sbjct: 274 DATLKDVITVVRADE 288

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Mangifera indica (taxid: 29780)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O22049|AOX2_ARATH Ubiquinol oxidase 2, mitochondrial OS=Arabidopsis thaliana GN=AOX2 PE=1 SV=2

 Score =  310 bits (795), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 141/195 (72%), Positives = 168/195 (86%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETY+A+LSI++ KHH P+N  DK AY  V+ L+ PT +FFQRR+ C AM+LETV AVP
Sbjct: 129 PWETYQANLSIDLKKHHVPKNIADKVAYRIVKLLRIPTDIFFQRRYGCRAMMLETVAAVP 188

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLH KS+RKFEHSGGWIKALLEEAENERMHLMT +EL +P+WYER LV  VQG+
Sbjct: 189 GMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTMMELVKPKWYERLLVMLVQGI 248

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFN++F+ Y+ SP+LAHR+VGYLEEEA++SYTEFLKD++NG  EN  APAIAIDYWRLP 
Sbjct: 249 FFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLKDIDNGKIENVAAPAIAIDYWRLPK 308

Query: 181 DSTLRDVVVVIRADE 195
           D+TL+DVV VIRADE
Sbjct: 309 DATLKDVVTVIRADE 323

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
208436644	205	mitochondrial alternative oxidase 1b, pa	1.0	0.951	0.876	4e-99
208436662	201	mitochondrial alternative oxidase 1b [Vi	0.994	0.965	0.876	3e-98
224074535	253	predicted protein [Populus trichocarpa]	1.0	0.770	0.866	3e-98
147782375	285	hypothetical protein VITISV_001908 [Viti	1.0	0.684	0.866	3e-98
208436648	199	mitochondrial alternative oxidase 1b, pa	1.0	0.979	0.866	4e-98
225427480	322	PREDICTED: alternative oxidase 3, mitoch	1.0	0.605	0.866	6e-98
350539127	318	alternative oxidase 1b [Solanum lycopers	1.0	0.613	0.861	1e-97
6967043	294	alternative oxidase [Populus tremula x P	1.0	0.663	0.866	5e-97
18398395	318	alternative oxidase 3 [Arabidopsis thali	1.0	0.613	0.835	8e-96
297851678	315	At1g32350/F5D14.4 [Arabidopsis lyrata su	1.0	0.619	0.830	2e-95

>gi|208436644|gb|ACI28868.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]

 Score =  365 bits (938), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 171/195 (87%), Positives = 182/195 (93%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETYKAD+SI+V KHHKP  + DKFAYWTVQALK PTH+FFQR+HMCHAMLLETV AVP
Sbjct: 7   PWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVP 66

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLHC+SLR+FE SGGWIKALLEEAENERMHLMTFIELA+PQWYERALVFAVQGV
Sbjct: 67  GMVGGMLLHCQSLRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERALVFAVQGV 126

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFL YLASPK+AHRI GYLEEEAV SYTEFLKDL+NGSFEN PAPAIAIDYWRLP 
Sbjct: 127 FFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPA 186

Query: 181 DSTLRDVVVVIRADE 195
           +STLRDVV VIRADE
Sbjct: 187 ESTLRDVVEVIRADE 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|208436662|gb|ACI28877.1| mitochondrial alternative oxidase 1b [Vitis vinifera]

 Score =  362 bits (930), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 170/194 (87%), Positives = 181/194 (93%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETYKAD+SI+V KHHKP  + DKFAYWTVQALK PTH+FFQR+HMCHAMLLETV AVP
Sbjct: 8   PWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKVPTHMFFQRKHMCHAMLLETVAAVP 67

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLHC+SLR+FE SGGWIKALLEEAENERMHLMTFIELA+PQWYERALVFAVQGV
Sbjct: 68  GMVGGMLLHCQSLRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERALVFAVQGV 127

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFL YLASPK+AHRI GYLEEEAV SYTEFLKDL+NGSFEN PAPAIAIDYWRLP 
Sbjct: 128 FFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPA 187

Query: 181 DSTLRDVVVVIRAD 194
           +STLRDVV VIRAD
Sbjct: 188 ESTLRDVVEVIRAD 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074535|ref|XP_002304386.1| predicted protein [Populus trichocarpa] gi|222841818|gb|EEE79365.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (930), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 169/195 (86%), Positives = 183/195 (93%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWE+YK D+SI+V KHHKP    DKFAYWTVQ LK+PT+LFFQRRHMCHAMLLETV AVP
Sbjct: 29  PWESYKPDISIDVKKHHKPGTTMDKFAYWTVQVLKYPTYLFFQRRHMCHAMLLETVAAVP 88

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLHCKSLR+FE SGGWIKALLEEAENERMHLMTF+E+A+PQWYERALVFAVQG 
Sbjct: 89  GMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFVEIAKPQWYERALVFAVQGA 148

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFLAYLASPKLAHRIVGYLEEEAVNSY+EFL+DL+NG+FEN PAPAIAIDYWRLPP
Sbjct: 149 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYSEFLEDLDNGNFENVPAPAIAIDYWRLPP 208

Query: 181 DSTLRDVVVVIRADE 195
           +STLRDVV VIRADE
Sbjct: 209 NSTLRDVVFVIRADE 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782375|emb|CAN70584.1| hypothetical protein VITISV_001908 [Vitis vinifera]

 Score =  362 bits (930), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 169/195 (86%), Positives = 181/195 (92%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETYKAD+SI+V KHHKP  + DKFAYWTVQALK PTH+FFQR+HMCHAMLLETV AVP
Sbjct: 61  PWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVP 120

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLHC+S R+FE SGGWIKALLEEAENERMHLMTFIELA+PQWYERAJVFAVQGV
Sbjct: 121 GMVGGMLLHCQSXRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAJVFAVQGV 180

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFL YLASPK+AHRI GYLEEEAV SYTEFLKDL+NGSFEN PAPAIAIDYWRLP 
Sbjct: 181 FFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPA 240

Query: 181 DSTLRDVVVVIRADE 195
           +STLRDVV VIRADE
Sbjct: 241 ESTLRDVVEVIRADE 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|208436648|gb|ACI28870.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]

 Score =  362 bits (929), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 169/195 (86%), Positives = 181/195 (92%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETYKAD+SI+V KHHKP  + DKFAYWTVQALK PTH+FFQR+HMCHAMLLETV AVP
Sbjct: 1   PWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVP 60

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLHC+S R+FE SGGWIKALLEEAENERMHLMTFIELA+PQWYERA+VFAVQGV
Sbjct: 61  GMVGGMLLHCQSPRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAIVFAVQGV 120

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFL YLASPK+AHRI GYLEEEAV SYTEFLKDL+NGSFEN PAPAIAIDYWRLP 
Sbjct: 121 FFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPA 180

Query: 181 DSTLRDVVVVIRADE 195
           +STLRDVV VIRADE
Sbjct: 181 ESTLRDVVEVIRADE 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427480|ref|XP_002262982.1| PREDICTED: alternative oxidase 3, mitochondrial [Vitis vinifera] gi|296088482|emb|CBI37473.3| unnamed protein product [Vitis vinifera]

 Score =  362 bits (928), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 169/195 (86%), Positives = 181/195 (92%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETYKAD+SI+V KHHKP  + DKFAYWTVQALK PTH+FFQR+HMCHAMLLETV AVP
Sbjct: 98  PWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVP 157

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLHC+S R+FE SGGWIKALLEEAENERMHLMTFIELA+PQWYERA+VFAVQGV
Sbjct: 158 GMVGGMLLHCQSPRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAIVFAVQGV 217

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFL YLASPK+AHRI GYLEEEAV SYTEFLKDL+NGSFEN PAPAIAIDYWRLP 
Sbjct: 218 FFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPA 277

Query: 181 DSTLRDVVVVIRADE 195
           +STLRDVV VIRADE
Sbjct: 278 ESTLRDVVEVIRADE 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539127|ref|NP_001234120.1| alternative oxidase 1b [Solanum lycopersicum] gi|29465624|gb|AAK58483.1| alternative oxidase 1b [Solanum lycopersicum]

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 168/195 (86%), Positives = 182/195 (93%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETY AD+SI+V KHH P N+ DKFAYWTVQ+LK+PT+LFFQRRHMCHAMLLETV AVP
Sbjct: 94  PWETYSADISIDVEKHHMPTNFMDKFAYWTVQSLKYPTYLFFQRRHMCHAMLLETVAAVP 153

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLHCKSLR+FEHSGGWIKALLEEAENERMHLMTFIEL+ P+WYERALVFAVQGV
Sbjct: 154 GMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSNPKWYERALVFAVQGV 213

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           F NAYF+AYLASPKLAHRIVGYLEEEAVNSYTEFL D+E G FEN+PAPAIAIDYWRLP 
Sbjct: 214 FVNAYFIAYLASPKLAHRIVGYLEEEAVNSYTEFLIDIEKGLFENSPAPAIAIDYWRLPA 273

Query: 181 DSTLRDVVVVIRADE 195
           D+TL+DVV VIRADE
Sbjct: 274 DATLKDVVTVIRADE 288

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6967043|emb|CAB72441.1| alternative oxidase [Populus tremula x Populus tremuloides]

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 169/195 (86%), Positives = 182/195 (93%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWE+YK D+SI+V KHHKP    DKFAYWTVQ LK+PT+LFFQRRHMCHAMLLETV AVP
Sbjct: 70  PWESYKPDISIDVKKHHKPGTTMDKFAYWTVQVLKYPTYLFFQRRHMCHAMLLETVAAVP 129

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLH KSLR+FE SGGWIKALLEEAENERMHLMTF+E+A+PQWYERALVFAVQGV
Sbjct: 130 GMVGGMLLHFKSLRRFEQSGGWIKALLEEAENERMHLMTFVEIAKPQWYERALVFAVQGV 189

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFLAYLASPKLAHRIVGYLEEEAVNSY+EFL+DL+N SFEN PAPAIAIDYWRLPP
Sbjct: 190 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYSEFLEDLDNCSFENVPAPAIAIDYWRLPP 249

Query: 181 DSTLRDVVVVIRADE 195
           +STLRDVV VIRADE
Sbjct: 250 NSTLRDVVFVIRADE 264

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398395|ref|NP_564395.1| alternative oxidase 3 [Arabidopsis thaliana] gi|85681032|sp|Q8LEE7.2|AOX3_ARATH RecName: Full=Ubiquinol oxidase 3, mitochondrial; AltName: Full=Alternative oxidase 3; Flags: Precursor gi|8920609|gb|AAF81331.1|AC007767_11 Strong similarity to alternative oxidase from Populus tremula x Populus tremuloides gb|AJ271889. It contains an alternative oxidase domain PF|01786 [Arabidopsis thaliana] gi|115311485|gb|ABI93923.1| At1g32350 [Arabidopsis thaliana] gi|332193346|gb|AEE31467.1| alternative oxidase 3 [Arabidopsis thaliana]

 Score =  354 bits (909), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 163/195 (83%), Positives = 179/195 (91%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PW++YK D+SI+VTKHHKP N+ DKFAYWTVQ LK P  LFFQR+HMCHAMLLETV AVP
Sbjct: 94  PWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVP 153

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLH KSLR+FEHSGGWIKALLEEAENERMHLMTFIEL++P+WYERA+VF VQGV
Sbjct: 154 GMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGV 213

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFLAY+ SPKLAHRI GYLEEEAVNSYTEFLKD++ G FEN+PAPAIAIDYWRLP 
Sbjct: 214 FFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPK 273

Query: 181 DSTLRDVVVVIRADE 195
           D+TLRDVV VIRADE
Sbjct: 274 DATLRDVVYVIRADE 288

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851678|ref|XP_002893720.1| At1g32350/F5D14.4 [Arabidopsis lyrata subsp. lyrata] gi|297339562|gb|EFH69979.1| At1g32350/F5D14.4 [Arabidopsis lyrata subsp. lyrata]

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 162/195 (83%), Positives = 178/195 (91%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PW++YK D+SI+VTKHHKP N+ DKFAYWTVQ LK P  LFFQR+HMCHAMLLETV AVP
Sbjct: 91  PWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVP 150

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLH KSLR+FEHSGGWIKALLEEAENERMHLMTFIEL++P+WYERA+VF VQG 
Sbjct: 151 GMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGA 210

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFLAY+ SPKLAHRI GYLEEEAVNSYTEFLKD++ G FEN+PAPAIAIDYWRLP 
Sbjct: 211 FFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPK 270

Query: 181 DSTLRDVVVVIRADE 195
           D+TLRDVV VIRADE
Sbjct: 271 DATLRDVVYVIRADE 285

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2028311	318	AOX1D "alternative oxidase 1D"	1.0	0.613	0.835	4e-90
TAIR|locus:2087807	354	AOX1A "alternative oxidase 1A"	1.0	0.550	0.764	2.4e-83
TAIR|locus:2087882	325	AOX1B "alternative oxidase 1B"	1.0	0.6	0.764	6.4e-83
UNIPROTKB|Q07185	321	AOX1 "Ubiquinol oxidase 1, mit	1.0	0.607	0.748	4.1e-81
UNIPROTKB|Q8W855	345	AOX1c "Alternative oxidase" [O	1.0	0.565	0.748	1.1e-80
TAIR|locus:2089124	329	AOX1C "alternative oxidase 1C"	1.0	0.592	0.733	7.6e-80
TAIR|locus:2173353	353	AOX2 "alternative oxidase 2" [	1.0	0.552	0.723	6.2e-78
DICTYBASE|DDB_G0280819	337	aoxA [Dictyostelium discoideum	0.912	0.528	0.480	6.4e-44
ASPGD|ASPL0000047182	354	AN2099 [Emericella nidulans (t	0.743	0.409	0.543	1.4e-41
UNIPROTKB|O93788	377	AOX1 "Alternative oxidase, mit	0.743	0.384	0.516	5.2e-41

TAIR|locus:2028311 AOX1D "alternative oxidase 1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 163/195 (83%), Positives = 179/195 (91%)

Query:     1 PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
             PW++YK D+SI+VTKHHKP N+ DKFAYWTVQ LK P  LFFQR+HMCHAMLLETV AVP
Sbjct:    94 PWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVP 153

Query:    61 GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
             GMVGGMLLH KSLR+FEHSGGWIKALLEEAENERMHLMTFIEL++P+WYERA+VF VQGV
Sbjct:   154 GMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGV 213

Query:   121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
             FFNAYFLAY+ SPKLAHRI GYLEEEAVNSYTEFLKD++ G FEN+PAPAIAIDYWRLP 
Sbjct:   214 FFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPK 273

Query:   181 DSTLRDVVVVIRADE 195
             D+TLRDVV VIRADE
Sbjct:   274 DATLRDVVYVIRADE 288

GO:0005739 "mitochondrion" evidence=ISM

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2087807 AOX1A "alternative oxidase 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 149/195 (76%), Positives = 175/195 (89%)

Query:     1 PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
             PWETYKAD++I++ KHH P  + D+ AYWTV++L++PT LFFQRR+ C AM+LETV AVP
Sbjct:   130 PWETYKADITIDLKKHHVPTTFLDRIAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 189

Query:    61 GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
             GMVGGMLLHCKSLR+FE SGGWIKALLEEAENERMHLMTF+E+A+P+WYERALV  VQGV
Sbjct:   190 GMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGV 249

Query:   121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
             FFNAYFL YL SPK AHR+VGYLEEEA++SYTEFLK+L+ G+ EN PAPAIAIDYWRLP 
Sbjct:   250 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPA 309

Query:   181 DSTLRDVVVVIRADE 195
             D+TLRDVV+V+RADE
Sbjct:   310 DATLRDVVMVVRADE 324

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=IGI;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0045333 "cellular respiration" evidence=IDA

GO:0009409 "response to cold" evidence=IMP

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IEP

TAIR|locus:2087882 AOX1B "alternative oxidase 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 149/195 (76%), Positives = 174/195 (89%)

Query:     1 PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
             PWETYK+DL+I++ KHH P    DK AYWTV++L++PT LFFQRR+ C AM+LETV AVP
Sbjct:   101 PWETYKSDLTIDLKKHHVPSTLPDKLAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 160

Query:    61 GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
             GMVGGML+HCKSLR+FE SGGWIKALLEEAENERMHLMTF+E+A+P WYERALV AVQG+
Sbjct:   161 GMVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYERALVIAVQGI 220

Query:   121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
             FFNAYFL YL SPK AHR+VGYLEEEA++SYTEFLK+L+NG+ EN PAPAIAIDYWRL  
Sbjct:   221 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAIDYWRLEA 280

Query:   181 DSTLRDVVVVIRADE 195
             D+TLRDVV+V+RADE
Sbjct:   281 DATLRDVVMVVRADE 295

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

UNIPROTKB|Q07185 AOX1 "Ubiquinol oxidase 1, mitochondrial" [Glycine max (taxid:3847)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 146/195 (74%), Positives = 170/195 (87%)

Query:     1 PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
             PW TYKADLSI++ KH  P  + DK A+WTV+ L++PT +FFQRR+ C AM+LETV AVP
Sbjct:    97 PWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKVLRYPTDVFFQRRYGCRAMMLETVAAVP 156

Query:    61 GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
             GMV GMLLHCKSLR+FEHSGGW KALLEEAENERMHLMTF+E+A+P+WYERALV  VQGV
Sbjct:   157 GMVAGMLLHCKSLRRFEHSGGWFKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGV 216

Query:   121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
             FFNAYFL YL SPK AHR+ GYLEEEA++SYTEFLK+L+ G+ EN PAPAIAIDYW+LPP
Sbjct:   217 FFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWQLPP 276

Query:   181 DSTLRDVVVVIRADE 195
              STLRDVV+V+RADE
Sbjct:   277 GSTLRDVVMVVRADE 291

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q8W855 AOX1c "Alternative oxidase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 146/195 (74%), Positives = 171/195 (87%)

Query:     1 PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
             PWETY  D +I++ KHH+P+   DK AYWTV+AL+ PT +FFQRR+ C AM+LETV AVP
Sbjct:   121 PWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRVPTDIFFQRRYGCRAMMLETVAAVP 180

Query:    61 GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
             GMVGGMLLH +SLR+FEHSGGWI+ALLEEAENERMHLMTF+E+A+P+WYERALV AVQGV
Sbjct:   181 GMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVLAVQGV 240

Query:   121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
             FFNAYFL YL SPKLAHR+VGYLEEEA++SYTE+LKD+E G  EN PAP IAIDYWRLP 
Sbjct:   241 FFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIENVPAPPIAIDYWRLPA 300

Query:   181 DSTLRDVVVVIRADE 195
              +TL+DVVVV+RADE
Sbjct:   301 GATLKDVVVVVRADE 315

GO:0005739 "mitochondrion" evidence=IC

TAIR|locus:2089124 AOX1C "alternative oxidase 1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 143/195 (73%), Positives = 172/195 (88%)

Query:     1 PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
             PWETYKADL+I++ KHH P    DK AYW V++L++PT LFFQRR+ C A++LETV AVP
Sbjct:   105 PWETYKADLTIDLKKHHVPSTLPDKIAYWMVKSLRWPTDLFFQRRYGCRAIMLETVAAVP 164

Query:    61 GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
             GMVGGML+H KSLR+FE SGGWIKALLEEAENERMHLMTF+E+A+P+WYERALV +VQGV
Sbjct:   165 GMVGGMLMHFKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVISVQGV 224

Query:   121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
             FFNAY + Y+ SPK AHR+VGYLEEEA++SYTEFLK+L+NG+ EN PAPAIA+DYWRL  
Sbjct:   225 FFNAYLIGYIISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAVDYWRLEA 284

Query:   181 DSTLRDVVVVIRADE 195
             D+TLRDVV+V+RADE
Sbjct:   285 DATLRDVVMVVRADE 299

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

TAIR|locus:2173353 AOX2 "alternative oxidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 141/195 (72%), Positives = 168/195 (86%)

Query:     1 PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
             PWETY+A+LSI++ KHH P+N  DK AY  V+ L+ PT +FFQRR+ C AM+LETV AVP
Sbjct:   129 PWETYQANLSIDLKKHHVPKNIADKVAYRIVKLLRIPTDIFFQRRYGCRAMMLETVAAVP 188

Query:    61 GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
             GMVGGMLLH KS+RKFEHSGGWIKALLEEAENERMHLMT +EL +P+WYER LV  VQG+
Sbjct:   189 GMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTMMELVKPKWYERLLVMLVQGI 248

Query:   121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
             FFN++F+ Y+ SP+LAHR+VGYLEEEA++SYTEFLKD++NG  EN  APAIAIDYWRLP 
Sbjct:   249 FFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLKDIDNGKIENVAAPAIAIDYWRLPK 308

Query:   181 DSTLRDVVVVIRADE 195
             D+TL+DVV VIRADE
Sbjct:   309 DATLKDVVTVIRADE 323

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA;IDA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0010230 "alternative respiration" evidence=ISS

DICTYBASE|DDB_G0280819 aoxA [Dictyostelium discoideum (taxid:44689)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 86/179 (48%), Positives = 128/179 (71%)

Query:    17 HKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKF 76
             ++ ++  D FA ++V  L+  ++LFF+ + + +A++LETV AVPG+V GM LH K+LR  
Sbjct:    98 YEAKSLSDNFAKFSVLFLRKFSNLFFKEKFLHYAIVLETVAAVPGLVAGMFLHLKTLRNM 157

Query:    77 EHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLA 136
             + S  WIK L++E ENERMHL++F+EL +P   ER +V   Q +++N + + Y+ SPK A
Sbjct:   158 Q-SNNWIKILMDEMENERMHLLSFMELTKPTLLERGMVAVTQAIYWNLFLVFYVLSPKTA 216

Query:   137 HRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE 195
             HR  GYLEE+AV +YT  L+D+++G   N  AP IAI+YW LP D+TLRD+++VIR DE
Sbjct:   217 HRFTGYLEEQAVVTYTHMLEDIDSGKVPNYKAPQIAIEYWGLPEDATLRDLILVIRQDE 275

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000047182 AN2099 [Emericella nidulans (taxid:162425)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 81/149 (54%), Positives = 110/149 (73%)

Query:    51 MLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYE 110
             + LE+V  VPGMVGGML H +SLR+ +   GWI+ LLEEA NERMHL+TF+++A P W+ 
Sbjct:   154 VFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMAEPGWFM 213

Query:   111 RALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGS---FENAP 167
             R +V   QGVFFN +FL+YL SP+  HR VGYLEEEAV +YT  +KDLE+G    +E   
Sbjct:   214 RLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEKLE 273

Query:   168 APAIAIDYWRLPPDS-TLRDVVVVIRADE 195
             AP IA+ YW++P  + T++D+++ +RADE
Sbjct:   274 APEIAVKYWKMPEGNRTMKDLLLYVRADE 302

GO:0005739 "mitochondrion" evidence=IDA

GO:0009916 "alternative oxidase activity" evidence=IEA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0010230 "alternative respiration" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

UNIPROTKB|O93788 AOX1 "Alternative oxidase, mitochondrial" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 409 (149.0 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 78/151 (51%), Positives = 105/151 (69%)

Query:    51 MLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYE 110
             + LE++ AVPGMV GML H  SLR+ +   GWI+ LLEEA NERMHL+TF+++  P W  
Sbjct:   153 IFLESIAAVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMCEPGWLM 212

Query:   111 RALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFE--NAP- 167
             + L+   QGV+FNA F+AYL SPK+ HR VGYLEEEAV++YT  +++LE G     + P 
Sbjct:   213 KILIIGAQGVYFNAMFVAYLISPKICHRFVGYLEEEAVHTYTRSIEELERGDLPKWSDPK 272

Query:   168 --APAIAIDYWRLPPDS-TLRDVVVVIRADE 195
                P IA+ YW +P    T+RD+++ IRADE
Sbjct:   273 FQVPEIAVSYWGMPEGHRTMRDLLLYIRADE 303

GO:0043581 "mycelium development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LEE7	AOX3_ARATH	1, ., -, ., -, ., -	0.8358	1.0	0.6132	yes	no
Q40578	AOX2_TOBAC	1, ., -, ., -, ., -	0.8051	1.0	0.6565	N/A	no
Q07185	AOX1_SOYBN	1, ., -, ., -, ., -	0.7487	1.0	0.6074	yes	no
Q40294	AOX1_MANIN	1, ., -, ., -, ., -	0.7230	1.0	0.6132	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
PLN02478	328	PLN02478, PLN02478, alternative oxidase	1e-144
pfam01786	214	pfam01786, AOX, Alternative oxidase	1e-102
cd01053	168	cd01053, AOX, Alternative oxidase, ferritin-like d	1e-84

>gnl|CDD|215265 PLN02478, PLN02478, alternative oxidase

 Score =  402 bits (1035), Expect = e-144
 Identities = 155/195 (79%), Positives = 173/195 (88%)

Query: 1   PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVP 60
           PWETYKADLSI++ KHH P+   DK AYWTV++L+ PT LFFQRR+ C AM+LETV AVP
Sbjct: 104 PWETYKADLSIDLKKHHVPKTLLDKIAYWTVKSLRVPTDLFFQRRYGCRAMMLETVAAVP 163

Query: 61  GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGV 120
           GMVGGMLLH KSLR+FEHSGGWIKALLEEAENERMHLMTF+E+A+P+WYERALV AVQGV
Sbjct: 164 GMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVIAVQGV 223

Query: 121 FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPP 180
           FFNAYFL YL SPK AHRIVGYLEEEA++SYTEFLKDL+ G  EN PAPAIAIDYWRLP 
Sbjct: 224 FFNAYFLGYLISPKFAHRIVGYLEEEAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRLPA 283

Query: 181 DSTLRDVVVVIRADE 195
           D+TLRDVV V+RADE
Sbjct: 284 DATLRDVVTVVRADE 298

Length = 328

>gnl|CDD|216699 pfam01786, AOX, Alternative oxidase

 Score =  294 bits (754), Expect = e-102
 Identities = 115/202 (56%), Positives = 141/202 (69%), Gaps = 9/202 (4%)

Query: 3   ETYKADLSINVT-KHHKPENYRDKFAYWTVQALKFPTHL-------FFQRRHMCHAMLLE 54
             Y  D   NV   H +P+   DK A++ V+ L++   L         + R +  A+ LE
Sbjct: 1   PIYTEDELENVKVTHREPKTLGDKVAFFLVKFLRWCFDLVTGYRYEMTEERWLHRAIFLE 60

Query: 55  TVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALV 114
           TV  VPGMVGGML H +SLR+ +  GGWI+ LLEEAENERMHL+TF+EL +P W+ER LV
Sbjct: 61  TVAGVPGMVGGMLRHLRSLRRLKRDGGWIETLLEEAENERMHLLTFLELGKPGWFERFLV 120

Query: 115 FAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAID 174
              QGVFFNA+FL YL SP++AHR VGYLEEEAV +YT FLKD+E G   N PAP IAID
Sbjct: 121 LLAQGVFFNAFFLLYLLSPRMAHRFVGYLEEEAVVTYTHFLKDIEAGKLPNVPAPEIAID 180

Query: 175 YWRLPP-DSTLRDVVVVIRADE 195
           YWRLP  D+TLRDV++VIRADE
Sbjct: 181 YWRLPELDATLRDVILVIRADE 202

The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transfered directly from reduced ubiquinol to oxygen forming water. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process. In rice the transcript levels of the alternative oxidase are increased by low temperature. Length = 214

>gnl|CDD|153112 cd01053, AOX, Alternative oxidase, ferritin-like diiron-binding domain

 Score =  247 bits (632), Expect = 1e-84
 Identities = 96/154 (62%), Positives = 111/154 (72%)

Query: 42  FQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFI 101
           ++ R +   + LETV  VPGMV GMLLH  SLR     GGWIK LLEEAENERMHL+ F 
Sbjct: 1   YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFE 60

Query: 102 ELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENG 161
           EL  P W+ R  V   Q VF+NAYFL YL SP+LAHR VGYLEEEAV++YTEFLKD+E G
Sbjct: 61  ELGGPGWWFRRFVAQHQAVFYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEG 120

Query: 162 SFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE 195
              + PAP IAI+Y+RL  D+TL DV V IRADE
Sbjct: 121 LKPDLPAPEIAIEYYRLGEDATLYDVFVAIRADE 154

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular disulfide bridge between monomeric subunits. The enzyme is non-proton-motive and does not contribute to the conservation of energy. The heat that dissipates from AOX activity is used in thermogenic plants to volatilize primary amines to attract pollinating insects. Other functions have been proposed: i) that the alternative oxidase allows Krebs-cycle turnover when the energy charge of the cell is high, and ii) that the enzyme protects against oxidative stress. The expression of AOX is induced when plants are exposed to a variety of stresses including chilling, pathogen attack, senescence and fruit ripening. Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
PLN02478	328	alternative oxidase	100.0
PF01786	207	AOX: Alternative oxidase; InterPro: IPR002680 The	100.0
cd01053	168	AOX Alternative oxidase, ferritin-like diiron-bind	100.0
PF03232	172	COQ7: Ubiquinone biosynthesis protein COQ7; InterP	95.5
cd07908	154	Mn_catalase_like Manganese catalase-like protein,	94.7
cd01042	165	DMQH Demethoxyubiquinone hydroxylase, ferritin-lik	94.55
cd01045	139	Ferritin_like_AB Uncharacterized family of ferriti	91.0
COG2941	204	CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzym	89.3
cd01051	156	Mn_catalase Manganese catalase, ferritin-like diir	83.47
cd01044	125	Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin	82.83

>PLN02478 alternative oxidase

Probab=100.00  E-value=8.5e-92  Score=621.36  Aligned_cols=195  Identities=79%  Similarity=1.324  Sum_probs=194.3

Q ss_pred             CCcccccccccccccCCCCCCcchHHHHHHHHHhhhhhhhhccccccchhhhhhhhcCCCchHHHHHHHHHHhhccccCc
Q 041195            1 PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSG   80 (195)
Q Consensus         1 p~~~y~~~~~i~~~~H~~P~~~~D~~A~~~vk~lr~~~D~~~~~r~~~R~~~LETVA~VPgmv~~~~~HL~slr~m~rd~   80 (195)
                      ||++|+.+.++++.+|++|++++||+|+++||+||+++|++|++||++||+||||||||||||++|++||+|||+|+||+
T Consensus       104 p~~~y~~~~~~~~~~H~~P~~~~Dk~A~~~Vk~lR~~~D~~f~~R~~~R~ifLETVA~VPGmV~gmlrHL~SLRr~krd~  183 (328)
T PLN02478        104 PWETYKADLSIDLKKHHVPKTLLDKIAYWTVKSLRVPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSG  183 (328)
T ss_pred             CCccccHhhhchhhcCCCCCchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCchHHHHHHHHHHHHhhhhccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHHHHHHHHHHHhhhC
Q 041195           81 GWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLEN  160 (195)
Q Consensus        81 gwI~~lleEaeNErmHLl~~~~l~~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~l~~i~~  160 (195)
                      ||||+|||||||||||||||+++++|+|++|++++++|++|||+||++|++|||+|||||||||||||+|||+||++||+
T Consensus       184 gWIrtLLeEAeNERMHLLtf~~l~~p~w~eR~lv~~aQgvf~~~ff~~YLiSPr~aHRfvGYLEEEAV~TYT~~L~eid~  263 (328)
T PLN02478        184 GWIKALLEEAENERMHLMTFMEVAKPKWYERALVIAVQGVFFNAYFLGYLISPKFAHRIVGYLEEEAIHSYTEFLKDLDA  263 (328)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195          161 GSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE  195 (195)
Q Consensus       161 g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE  195 (195)
                      |+++|+|||+||++||+||+++||||||++||+||
T Consensus       264 G~l~n~pAP~IAi~YW~LP~~atLrDVi~~IRaDE  298 (328)
T PLN02478        264 GKIENVPAPAIAIDYWRLPADATLRDVVTVVRADE  298 (328)
T ss_pred             CcccCCCCChHHHHHhCCCCCCcHHHHHHHHHhhh
Confidence            99999999999999999999999999999999998

>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []

Probab=100.00  E-value=1.4e-85  Score=558.18  Aligned_cols=191  Identities=55%  Similarity=1.014  Sum_probs=186.5

Q ss_pred             cccccccccc-cCCCCCCcchHHHHHHHHHhhhhhhhhccccccchhhhhhhhcCCCchHHHHHHHHHHhhccccCcchH
Q 041195            5 YKADLSINVT-KHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWI   83 (195)
Q Consensus         5 y~~~~~i~~~-~H~~P~~~~D~~A~~~vk~lr~~~D~~~~~r~~~R~~~LETVA~VPgmv~~~~~HL~slr~m~rd~gwI   83 (195)
                      ||.++..++. +|++|++++|++|+++||+||+++|++|++||++|++||||||||||||++|++||+|||+||||+|||
T Consensus         3 ~~~~~~~~v~~~h~~p~~~~d~~A~~~v~~lr~~~D~~~~~r~~~R~~~LEtVA~VPg~v~~~~~Hl~slr~~~rd~g~I   82 (207)
T PF01786_consen    3 YTEEELESVQVTHREPKTFSDRVAYGIVKFLRWFFDLLFEKRWLHRFIFLETVAGVPGMVGGMVRHLRSLRRMKRDGGWI   82 (207)
T ss_pred             CCHHHHhhcccccCCCCcHHHHHHHHHHHHHHHHHHHhccccchhheeeeeecccCChHHHHHHHHHHHHhCCCCCCcHH
Confidence            5666666666 799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHHHHHHHHHHHhhhCCCC
Q 041195           84 KALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSF  163 (195)
Q Consensus        84 ~~lleEaeNErmHLl~~~~l~~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~l~~i~~g~l  163 (195)
                      |+|+|||||||||||||++|+||+|++|++++++|++|||+|+++|++|||+|||||||+|||||+|||+||+|||+|++
T Consensus        83 ~~lleEaeNErmHLli~~~l~~p~~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEeeAv~tYt~~l~di~~g~l  162 (207)
T PF01786_consen   83 KTLLEEAENERMHLLIFEELGKPSWFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEEAVHTYTEFLEDIDEGKL  162 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHhhhCCCC-CCcHHHHHHHhhcCC
Q 041195          164 ENAPAPAIAIDYWRLPP-DSTLRDVVVVIRADE  195 (195)
Q Consensus       164 ~~~paP~iA~~Yw~lp~-~atl~Dvi~~IRaDE  195 (195)
                      +|+|||+||++||+||+ ++||||||++||+||
T Consensus       163 ~~~paP~iAi~Yw~l~~~~atlrDvi~~IRaDE  195 (207)
T PF01786_consen  163 PNMPAPEIAIDYWGLPELDATLRDVILAIRADE  195 (207)
T ss_pred             CCCCCCHHHHHHhCCCccCchHHHHHHHHHhhH
Confidence            99999999999999999 999999999999998

This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope

>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain

Probab=100.00  E-value=2e-78  Score=499.99  Aligned_cols=154  Identities=62%  Similarity=1.009  Sum_probs=152.7

Q ss_pred             ccccccchhhhhhhhcCCCchHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 041195           42 FQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVF  121 (195)
Q Consensus        42 ~~~r~~~R~~~LETVA~VPgmv~~~~~HL~slr~m~rd~gwI~~lleEaeNErmHLl~~~~l~~p~~~~R~lv~~~Q~vf  121 (195)
                      |++||++||+||||||||||||++|++||+|||+||||+||||+|||||||||||||||+++++|++++|.++..+|++|
T Consensus         1 ~~~r~~~R~~~LEtVA~vPgmv~~~~~HL~slr~~~rd~~wi~~lleEaeNErmHLltf~~l~~p~~~~r~~v~~~q~vf   80 (168)
T cd01053           1 YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFEELGGPGWWFRRFVAQHQAVF   80 (168)
T ss_pred             CCCcceehhhhhhHhccCcHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhChhhHHHhhhhhhhHHHHHHHHHHHhhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195          122 FNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE  195 (195)
Q Consensus       122 ~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~l~~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE  195 (195)
                      ||+|+++|++|||+|||||||||||||+|||+||++||+|+++|+|||+||++||++|+++||||||++||+||
T Consensus        81 y~~~~~~YlisPr~ahrfvgylEEeAV~TYt~~L~~id~g~~~~~paP~iAi~Yw~l~~~atl~Dvi~~IR~DE  154 (168)
T cd01053          81 YNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEGLKPDLPAPEIAIEYYRLGEDATLYDVFVAIRADE  154 (168)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhccccCCCCCCHHHHHHhCCCCCCcHHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular

>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]

Probab=95.50  E-value=0.092  Score=43.98  Aligned_cols=94  Identities=27%  Similarity=0.331  Sum_probs=68.5

Q ss_pred             HHHHHHHH-HHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHHHHHHHHHHH
Q 041195           83 IKALLEEA-ENERMHLMTFIELA-----RPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLK  156 (195)
Q Consensus        83 I~~lleEa-eNErmHLl~~~~l~-----~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~l~  156 (195)
                      ++..+.|. ++|..||..|.++-     .|+++.=+.   .-+. |.+=++.=++.++.+.-++.-+|+....-|.+-|+
T Consensus        34 ~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw---~~~g-~~LG~~tal~G~~~~~a~t~avE~~V~~Hy~~Ql~  109 (172)
T PF03232_consen   34 LRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLW---YVAG-FALGALTALLGDKAAMACTAAVETVVEEHYNDQLR  109 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHH---HHHH-HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555554 58999999999963     466543332   2233 33344566899999999999999999999999999


Q ss_pred             hhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195          157 DLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE  195 (195)
Q Consensus       157 ~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE  195 (195)
                      ++.+..               .++|..++++|..+|+||
T Consensus       110 ~L~~~~---------------~~~d~~l~~~i~~~r~DE  133 (172)
T PF03232_consen  110 ELPAMG---------------EEEDPELRAIIEQFRDDE  133 (172)
T ss_pred             HHHhcc---------------ccchHHHHHHHHHHHHHH
Confidence            986211               234455999999999998

It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain

Probab=94.70  E-value=0.092  Score=41.72  Aligned_cols=121  Identities=18%  Similarity=0.155  Sum_probs=82.4

Q ss_pred             hhhhhhcCCCchHHHHHHHHHHhhccccCcchHH-HHHHHHHHHHHHHHHHHHh----c-CCcHHHHHHHHHHHHHHHHH
Q 041195           51 MLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIK-ALLEEAENERMHLMTFIEL----A-RPQWYERALVFAVQGVFFNA  124 (195)
Q Consensus        51 ~~LETVA~VPgmv~~~~~HL~slr~m~rd~gwI~-~lleEaeNErmHLl~~~~l----~-~p~~~~R~lv~~~Q~vf~~~  124 (195)
                      +++|-++|.-|=..++...++.....+....-++ .+...|.-|.-|...+.++    + +|.+......   .+.++..
T Consensus        17 ~~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~---~~~~~~~   93 (154)
T cd07908          17 LLLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD---KFTYWTG   93 (154)
T ss_pred             HHHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc---cCCcCCc
Confidence            4678888888888888899998777765334454 5677999999999998886    2 5654332211   1111111


Q ss_pred             HHHHHHhChhhHHHhhhhhhhHHHHHHHHHHHhhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195          125 YFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE  195 (195)
Q Consensus       125 ~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~l~~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE  195 (195)
                      -.+....++..+-++.--+|+.|+..|.+.++.+                     +|...++++..|.+||
T Consensus        94 ~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~---------------------~d~~~r~ll~~I~~eE  143 (154)
T cd07908          94 KYVNYGESIKEMLKLDIASEKAAIAKYKRQAETI---------------------KDPYIRALLNRIILDE  143 (154)
T ss_pred             cccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHH
Confidence            1112334567799999999999999999998864                     3456777777777665

This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio

>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain

Probab=94.55  E-value=0.26  Score=41.07  Aligned_cols=93  Identities=27%  Similarity=0.342  Sum_probs=67.7

Q ss_pred             chHHHHHH-HHHHHHHHHHHHHHh----c-CCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHHHHHHHHH
Q 041195           81 GWIKALLE-EAENERMHLMTFIEL----A-RPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEF  154 (195)
Q Consensus        81 gwI~~lle-EaeNErmHLl~~~~l----~-~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~  154 (195)
                      .-++..++ =+..|.-||..|.++    + +|+++.=+.   --+. |.+=++.=++.++.++-|+.-+|+....-|..-
T Consensus        29 ~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW---~~~g-f~lG~~tal~G~~~a~~~~~avE~~V~~Hy~~q  104 (165)
T cd01042          29 PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLW---YVAG-FALGALTALLGKKAAMACTAAVETVVEEHYNDQ  104 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH---HHHH-HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Confidence            33554444 467899999999885    2 666543222   1223 333344556799999999999999999999999


Q ss_pred             HHhhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195          155 LKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE  195 (195)
Q Consensus       155 l~~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE  195 (195)
                      |++++.-                  +|..+++.|..+|+||
T Consensus       105 l~~L~~~------------------~d~~l~~~l~~~r~DE  127 (165)
T cd01042         105 LRELPAQ------------------PDKELRAIIEQFRDDE  127 (165)
T ss_pred             HHHhhcc------------------CCHHHHHHHHHHHHHH
Confidence            9998521                  3678999999999998

Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=91.00  E-value=5  Score=29.62  Aligned_cols=86  Identities=24%  Similarity=0.194  Sum_probs=51.7

Q ss_pred             hhccccCcchHHH-HHHHHHHHHHHHHHHHHhc-C------CcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhh
Q 041195           73 LRKFEHSGGWIKA-LLEEAENERMHLMTFIELA-R------PQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLE  144 (195)
Q Consensus        73 lr~m~rd~gwI~~-lleEaeNErmHLl~~~~l~-~------p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylE  144 (195)
                      +..+-++. -++. +..-|..|+.|..++.++- +      |...............+..-......++..+-+..--.|
T Consensus        20 ~a~~~~~~-~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E   98 (139)
T cd01045          20 LAEKAKDP-ELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKALESLMDPLEALRLAIEIE   98 (139)
T ss_pred             HHhHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence            33334333 3554 5568899999999888863 2      222111111111111111123456667788889999999


Q ss_pred             hHHHHHHHHHHHhhh
Q 041195          145 EEAVNSYTEFLKDLE  159 (195)
Q Consensus       145 EeAv~tYt~~l~~i~  159 (195)
                      ..|+..|.++++.++
T Consensus        99 ~~~~~~Y~~~~~~~~  113 (139)
T cd01045          99 KDAIEFYEELAEKAE  113 (139)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999998763

Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.

>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]

Probab=89.30  E-value=3.7  Score=35.55  Aligned_cols=90  Identities=29%  Similarity=0.310  Sum_probs=62.3

Q ss_pred             HHHHHHH-HHHHHHHHHHHHHh----c-CCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHHHHHHHHHHH
Q 041195           83 IKALLEE-AENERMHLMTFIEL----A-RPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLK  156 (195)
Q Consensus        83 I~~lleE-aeNErmHLl~~~~l----~-~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~l~  156 (195)
                      .|.++.| ++.|-.||-.|.+.    + .|+++-=+- .++   =|.+=.+.=++++++|.-|++-+|+--.+-|.+-|+
T Consensus        72 ~R~~l~em~d~E~~HL~~f~~~l~e~~vRPsll~P~W-~~~---~FalGA~a~Llgdk~am~~teavE~vIe~Hy~~ql~  147 (204)
T COG2941          72 PRIQLKEMADEEIDHLAWFEQRLLELGVRPSLLNPLW-YAA---AFALGAGAGLLGDKAAMGFTEAVETVIEKHYDGQLR  147 (204)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHH-HHH---HHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555 45677888888774    3 666543322 111   133444677999999999999999999999999888


Q ss_pred             hhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195          157 DLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE  195 (195)
Q Consensus       157 ~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE  195 (195)
                      .+.+                   .|+.++.-+...|.||
T Consensus       148 ~L~~-------------------~d~~lr~~l~qfR~DE  167 (204)
T COG2941         148 ELPN-------------------LDAELRAILAQFRDDE  167 (204)
T ss_pred             HHhh-------------------ccHHHHHHHHHHhhHH
Confidence            8852                   2336777888888876

>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain

Probab=83.47  E-value=4  Score=33.39  Aligned_cols=115  Identities=22%  Similarity=0.209  Sum_probs=73.6

Q ss_pred             hhhhhhcCCCchHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 041195           51 MLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYL  130 (195)
Q Consensus        51 ~~LETVA~VPgmv~~~~~HL~slr~m~rd~gwI~~lleEaeNErmHLl~~~~l~~p~~~~R~lv~~~Q~vf~~~~~~~Yl  130 (195)
                      .++|-++|.-|=..++++-++.-..++.+...-..+++.|..|..|+-++.++-..      +---..+..|   ...|+
T Consensus        24 ~l~~~~gG~~gEl~ai~qYl~q~~~~~~~~~~~d~l~~ia~eEm~H~e~la~~I~~------Lg~~~~g~pw---~~~yv   94 (156)
T cd01051          24 LLQEQLGGAFGELSAAMQYLFQSFNFREDPKYRDLLLDIGTEELSHLEMVATLIAM------LLKDSQGVPW---TAAYI   94 (156)
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCCCCCcC---CCccc
Confidence            57888888888777777888877777433343456788999999999888775100      0000111111   23332


Q ss_pred             hC---hhhHHHhhhhhhhHHHHHHHHHHHhhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195          131 AS---PKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE  195 (195)
Q Consensus       131 ~s---Pr~ahrfvgylEEeAv~tYt~~l~~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE  195 (195)
                      -+   +...-+-+=-.|+.|+.+|.+.++.+                     +|-+++|++..|+.||
T Consensus        95 ~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~---------------------~Dp~v~~~l~~I~~rE  141 (156)
T cd01051          95 QSSGNLVADLRSNIAAESRARLTYERLYEMT---------------------DDPGVKDTLSFLLVRE  141 (156)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHH
Confidence            22   22222333345889999999999887                     3557888888888886

Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz

>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain

Probab=82.83  E-value=16  Score=27.99  Aligned_cols=77  Identities=26%  Similarity=0.399  Sum_probs=49.8

Q ss_pred             hhccccCcchHHHHHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHH
Q 041195           73 LRKFEHSGGWIKALLEEAENERMHLMTFIELA-----RPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEA  147 (195)
Q Consensus        73 lr~m~rd~gwI~~lleEaeNErmHLl~~~~l~-----~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeA  147 (195)
                      +-....|..-=+.+..-|+.|+.|..+|.++.     .|. ...     ....++-  ++.=+++|..+.++..-.|+.|
T Consensus        20 la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~-~~~-----~~~~~~~--~l~~~~g~~~~l~~~~~~E~~a   91 (125)
T cd01044          20 LAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPPP-RPK-----LKIFFYK--LLARIFGPTFVLKLLERGEERA   91 (125)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-Ccc-----HHHHHHH--HHHHHHhHHHHHHHHHHhHHhh
Confidence            44444443433445668999999999999873     221 011     1111111  1233567888999999999999


Q ss_pred             HHHHHHHHHh
Q 041195          148 VNSYTEFLKD  157 (195)
Q Consensus       148 v~tYt~~l~~  157 (195)
                      +..|++..+.
T Consensus        92 i~~Y~~~~~~  101 (125)
T cd01044          92 IEKYDRLLEE  101 (125)
T ss_pred             HhhHHhhhhh
Confidence            9999998875

Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 11/34 (32%)

Query: 144 EEEAVNSYTEFLKDLENGSFE-NAP--APAIAID 174
           E++A       LK L+  S +  A   APA+AI 
Sbjct: 18  EKQA-------LKKLQA-SLKLYADDSAPALAIK 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00