Citrus Sinensis ID: 041252

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Protein Sequence
MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAGVTGAGVGERLDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISKCKLTRTIQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEcccccEEEEccHEccccccccccccEEEEcccccccccccccccccccccccccccccEHHcccccEEEEccccccHHHHHHHHHcccccccccccEccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
mpmfqpskrdvlvgfegsgdgqildldtavkdgvlggtvgagvtgagvgerLDLKKMIAELdlaeipsvfvcpislepmqdpvtlctgqtyersnILKWFslgrytcpttmqelwddsvtpnktLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSllgpftshavgseAVGVLVNLTLdsesktnlmqpaKVSLLVDMLNEGSVETKINCTRLIEKLMeekdfrpeivSSHRLLIGLMRLVknkrhpngilpgLSLLRSICLLNEVRSLVVSIGAVPQLvellpsldpdCLQLALCILDAlsslpegklALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSlnytdttfiskckltrtiq
Flexible Loop (DISEMBL)
MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVgagvtgagvgeRLDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLmeekdfrpeivSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSlnytdttfiskckltrtiq
Low Complexity Region (SEG)
MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDgvlggtvgagvtgagvgERLDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISKCKLTRTIQ
Disordered region (IsUnstruct)
**********VLVGFEGSGDGQILDLDTAVKDGVLGGTVGAGVTGAGVGERLDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKK***********LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISKCKLT****
Disordered Region (DISOPRED)
***************************TAVKDGVLGGT******************************VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIA***ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL***********KLTRTI*
Disordered Region (DISEMBL)
********RDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAGVTGAGVGERLDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISKCKLTRTIQ
Disordered Region (DISPRO)
*PMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAGVTGAGVGE******MIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISKCKLT****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAGVTGAGVGERLDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISKCKLTRTIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	450	2.2.26 [Sep-21-2011]
Q058P4	448	U-box domain-containing p	yes	no	0.995	1.0	0.755	0.0
Q9FHN9	444	U-box domain-containing p	no	no	0.984	0.997	0.707	0.0
Q9LT79	421	U-box domain-containing p	no	no	0.784	0.838	0.315	5e-37
Q9FXA4	421	U-box domain-containing p	no	no	0.853	0.912	0.297	8e-35
Q84TG3	411	E3 ubiquitin-protein liga	no	no	0.826	0.905	0.255	6e-28
Q5VRH9	611	U-box domain-containing p	no	no	0.775	0.571	0.277	1e-27
Q9LSA6	415	U-box domain-containing p	no	no	0.815	0.884	0.260	3e-27
Q8VZ40	632	U-box domain-containing p	no	no	0.784	0.558	0.284	2e-26
Q9FLF4	420	U-box domain-containing p	no	no	0.793	0.85	0.287	4e-26
Q9SNC6	660	U-box domain-containing p	no	no	0.786	0.536	0.264	8e-26

>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/450 (75%), Positives = 387/450 (86%), Gaps = 2/450 (0%)

Query: 1   MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAGVTGAGVGERLDLKKMIAE 60
           MPMFQP KRD L+GFEG GDGQ+LDLDTAVKDGVL      G     V E+LDLKKMI E
Sbjct: 1   MPMFQPLKRDGLIGFEGGGDGQVLDLDTAVKDGVL--GGVNGGGVGVVDEKLDLKKMIKE 58

Query: 61  LDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120
           LDL +IPSVF+CPISLEPMQDPVTLCTGQTYER NI KWF+LG  TCPTTMQELWDD+VT
Sbjct: 59  LDLQDIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDDTVT 118

Query: 121 PNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAH 180
           PNKTL+HLI+TWFSQKY+LMKKRSEDVQGRA E+LGTLKK KGQARV AL EL QI  AH
Sbjct: 119 PNKTLHHLIYTWFSQKYVLMKKRSEDVQGRAIEILGTLKKAKGQARVHALSELKQIVIAH 178

Query: 181 ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD 240
             ARKT+V+EGGV++ISSLLGPFTSHAVGSE V +LV+L LDS+SK+ LMQPAKVSL+VD
Sbjct: 179 LMARKTVVEEGGVSVISSLLGPFTSHAVGSEVVAILVSLDLDSDSKSGLMQPAKVSLIVD 238

Query: 241 MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL 300
           MLN+GS ETKINC RLI  L+EEK FR E+VSSH LL+GLMRLVK+KRH NG+ P L LL
Sbjct: 239 MLNDGSNETKINCARLIRGLVEEKGFRAELVSSHSLLVGLMRLVKDKRHRNGVSPALRLL 298

Query: 301 RSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANT 360
           + I +  +VRSL+VSIGAVPQLV++LPSLDP+CL+LAL +LDAL +  EG++A+KD ANT
Sbjct: 299 KPISVHKQVRSLMVSIGAVPQLVDILPSLDPECLELALFVLDALCTDVEGRVAVKDSANT 358

Query: 361 IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLK 420
           IP TVR+LMRVSE+CT YALSILWS+CK+APEECS  AV+ GLAAKL LVIQSGC+  LK
Sbjct: 359 IPYTVRVLMRVSENCTNYALSILWSVCKLAPEECSPLAVEVGLAAKLLLVIQSGCDAALK 418

Query: 421 QRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
           QRSAELLKLCSL+Y+DT FISKCKLTRTIQ
Sbjct: 419 QRSAELLKLCSLHYSDTMFISKCKLTRTIQ 448

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9FHN9|PUB31_ARATH U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31 PE=2 SV=1

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/451 (70%), Positives = 378/451 (83%), Gaps = 8/451 (1%)

Query: 1   MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAG-VTGAGVGERLDLKKMIA 59
           MPMFQPSK        G  DG ILDL +AVKDGVLGG  G   V      ++LDLK+MI+
Sbjct: 1   MPMFQPSK-------NGGFDGHILDLHSAVKDGVLGGGDGKFLVVVTDEKKKLDLKEMIS 53

Query: 60  ELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV 119
           EL+L EIPSVF+CPISLEPMQDPVTLCTGQTYERSNILKWF++G  TCPTTMQELWDD V
Sbjct: 54  ELELPEIPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELWDDLV 113

Query: 120 TPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAA 179
           TPNKTL+ LI+TWFSQKY+LMKKRSEDVQGRA E+LGTL+K KG+A+V AL EL Q+  A
Sbjct: 114 TPNKTLHQLIYTWFSQKYVLMKKRSEDVQGRAIEILGTLRKAKGKAKVHALSELKQVVMA 173

Query: 180 HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLV 239
           HA A+KT+VDEGGV +ISSLL PFTSHAVGSEA+ +LVNL LDS+SK  LMQPA+VSL+V
Sbjct: 174 HAIAKKTVVDEGGVFVISSLLSPFTSHAVGSEAIAILVNLELDSDSKAGLMQPARVSLMV 233

Query: 240 DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSL 299
           DMLN+GS+ETKINC RLI +L+EEK FR E+VSSH LL+GLMRLVK++R  NG+ P L+L
Sbjct: 234 DMLNDGSIETKINCARLIGRLVEEKGFRAELVSSHSLLVGLMRLVKDRRRRNGVSPALTL 293

Query: 300 LRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCAN 359
           L+S+ +  +VR+L+V IGAVPQLV++LP LD +CL+ AL +LD+L    EG++ALKD  N
Sbjct: 294 LKSVSVHKQVRNLLVRIGAVPQLVDVLPCLDVECLESALFVLDSLCLESEGRIALKDSVN 353

Query: 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVL 419
           TIP+TVRLLM+VSE CT YA+SILWS+CK+A EECSS AV+ GLAAKL LVIQSGC+P L
Sbjct: 354 TIPHTVRLLMKVSEKCTNYAISILWSVCKLASEECSSLAVEVGLAAKLLLVIQSGCDPAL 413

Query: 420 KQRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
           KQRSAELLKLCSL+Y+D+ FISKCKLTRTIQ
Sbjct: 414 KQRSAELLKLCSLHYSDSMFISKCKLTRTIQ 444

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1

 Score =  155 bits (393), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 190/390 (48%), Gaps = 37/390 (9%)

Query: 54  LKKMIAELDLA-EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG-RYTCPTTM 111
           + + I  LDL  +IP  F CPISLE MQDPVT+CTGQTY+R++I  W S+G   TCP T 
Sbjct: 1   MPRNIEPLDLGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTR 60

Query: 112 QELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQ------------------GRASE 153
             L D ++ PN TL  LI  W       +  RS  V+                   +AS 
Sbjct: 61  APLSDFTLIPNHTLRRLIQEW------CVANRSNGVERIPTPKQPADPTSVRALLSQASA 114

Query: 154 LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVA-LISSLLGPFTSHAVGSEA 212
           + GT   V  ++R  AL+ L   A      R  +        LI  L    TS  + SE+
Sbjct: 115 ITGT--HVSVRSRAAALRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSELVSES 172

Query: 213 VGVLVNLTLDSESKTNLM--QPAKVSLLVDMLNEGSVETKINCTRLIEKL---MEEKDFR 267
           + +LV L +   ++   +   P +V  L  +L + S+ET++N   LIE +    +  D +
Sbjct: 173 LALLVMLPITEPNQFVSISSDPGRVEFLTRLLFDSSIETRVNAAALIEIVSTGTKSADLK 232

Query: 268 PEIVSSHRLLIGLMRLVKNKRHPNGILP-GLSLLRSICLLNEVRSLVVSIGAVPQLVELL 326
             I +S  +  G++ L++N       L  G+  L ++C +   R + ++ GA   L++ L
Sbjct: 233 GSISNSESVFEGVLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRL 292

Query: 327 PSLDPDC-LQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWS 385
            +    C  + AL  ++ L   PEG  A  + A T+P  V+ ++RVS+  T+YA   L +
Sbjct: 293 AADFDRCDTERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLA 352

Query: 386 ICKIAPEECSSAAVDAGLAAKLFLVIQSGC 415
           +C  A E     A  AG+  +L L++QS C
Sbjct: 353 LCT-AEERWREEAAGAGVVVQLLLMVQSEC 381

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1

 Score =  148 bits (374), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 123/413 (29%), Positives = 206/413 (49%), Gaps = 29/413 (7%)

Query: 61  LDLA-EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV 119
           LDL  +IP  F CPISL+ M DPVT+ TGQTY+R++I  W ++G  TCP T   L D ++
Sbjct: 8   LDLGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTL 67

Query: 120 TPNKTLYHLIHTWF-------SQKYLLMKKRSEDVQGR-----ASELLGTLKKVKGQARV 167
            PN TL  LI  W         ++    K+ ++ +  R     AS + GT   V  ++R 
Sbjct: 68  IPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGT--HVSVRSRA 125

Query: 168 QALKELHQIAAAHASARKTMVDEGGVALISSLL-------GPFTSHAVGSEAVGVLVNLT 220
            A++ L  +A      R  +       ++  +L          +     S A+ VL+++T
Sbjct: 126 AAIRRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSSELVSESLALLVLLHMT 185

Query: 221 LDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLM---EEKDFRPEIVSSHRLL 277
            ++E +     P++V  +  +L + S+E ++N   LIE ++   +  D +  I  S  + 
Sbjct: 186 -ETECEAVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVLTGAKSMDLKLIISGSDSIF 244

Query: 278 IGLMRLVKNKRHPNGILP-GLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDC-LQ 335
            G++ L+KN       L  G+  + ++CL+ + R L +S GA   L++ L +    C  +
Sbjct: 245 EGVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFDRCDTE 304

Query: 336 LALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECS 395
             L  ++ L  LPEG  A  + A T+P  V+ ++RVS+  T+YA   L ++C  A E C 
Sbjct: 305 RGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALCT-AEERCR 363

Query: 396 SAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISKCKLTRT 448
             A  AGL  +L L++QS C    K+++  LLKL   ++ D + +      R+
Sbjct: 364 DEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDDSTVHSDDFNRS 416

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1

 Score =  125 bits (314), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 195/399 (48%), Gaps = 27/399 (6%)

Query: 65  EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKW-FSLGRYTCPTTMQELWDDSVTPNK 123
           EIP  F+CPISLE M+DPV + TG TY+R +I KW F+  + +CP T Q++ D  +TPN 
Sbjct: 11  EIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADLTPNH 70

Query: 124 TLYHLIHTW--FSQKYLLMKKRSEDVQGRASELLGTLKKVKG--QARVQALKELHQIAAA 179
           TL  LI +W   +  Y + +  +       SE+   ++      + +V+ LK L QI + 
Sbjct: 71  TLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRDSASSHENQVKCLKRLRQIVSE 130

Query: 180 HASARKTMVDEGGVALISSLLGPFTSH-AVGSEAVGVLVNL----TLDSESKTNLMQPAK 234
           +A+ ++ +   G    +++++   + + ++  EA+ +L +L    T+      N      
Sbjct: 131 NATNKRCLEAAGVPEFLANIVSNDSENGSLTDEALNLLYHLETSETVLKNLLNNKKDNNI 190

Query: 235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGIL 294
           V  L  ++  G  E+++  T L++ ++E  D    +     +   +++++ ++       
Sbjct: 191 VKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLKPEVFTEVVQILDDRISQKATK 250

Query: 295 PGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCL------QLALCILDALSSLP 348
             + +L +IC     R   V  G +  ++ELL  +D          ++A+ +LD L    
Sbjct: 251 AAMHILVNICPWGRNRHKAVEAGVISVIIELL--MDESFTSERRGPEMAMVVLDLLCQCA 308

Query: 349 EGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAA-----VDAGL 403
           EG+    +    I    + ++RVS+  +  A+ +L S+ +     C++ A     +  G+
Sbjct: 309 EGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVLLSVGRF----CATPALLHEMLQLGV 364

Query: 404 AAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISK 442
            AKL LV+Q  C    K+++ ELLKL +  + D+  + K
Sbjct: 365 VAKLCLVLQVSCGGKTKEKAKELLKLHARVWKDSPCLPK 403

E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB22 and PUB24.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 182/385 (47%), Gaps = 36/385 (9%)

Query: 66  IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL 125
           IP  F CPISLE MQDPV + +GQTYERS I KW   G  TCP T Q L   S+TPN  L
Sbjct: 228 IPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVL 287

Query: 126 YHLIHTWFSQKYLLMKKRSEDVQGRAS------------ELLGTLKKVKGQARVQALKEL 173
             LI  W     + + K  ++ + + +             L+  L+      +  A  E+
Sbjct: 288 KSLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEI 347

Query: 174 HQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPA 233
             +A  + + R  + + G + L+ +LL   +       AV  L+NL++   +K +++   
Sbjct: 348 RLLAKRNVNNRICIAEAGAIPLLVNLLS-SSDPRTQEHAVTALLNLSIHENNKASIVDSH 406

Query: 234 KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIG-------LMRLVKN 286
            +  +V++L  GS+ET+ N    +        F   +V  +++ IG       L+ L+ +
Sbjct: 407 AIPKIVEVLKTGSMETRENAAATL--------FSLSVVDENKVTIGAAGAIPPLINLLCD 458

Query: 287 KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPD--CLQLALCILDAL 344
              P G     + + ++C+    +   V  G V  L+  L  +DP    +  AL +L  L
Sbjct: 459 GS-PRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFL--VDPTGGMIDEALSLLSIL 515

Query: 345 SSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLA 404
           +  PEGK+ +   +  IP  V ++   S    + A +ILW +C  A  E + AA  AG+ 
Sbjct: 516 AGNPEGKIVIAR-SEPIPPLVEVIKTGSPRNRENAAAILWLLCS-ADTEQTLAAKAAGVE 573

Query: 405 AKLFLVIQSGCNPVLKQRSAELLKL 429
             L  + ++G +   K++++ +L+L
Sbjct: 574 DALKELSETGTDRA-KRKASSILEL 597

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 191/388 (49%), Gaps = 21/388 (5%)

Query: 66  IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL 125
           +PS F CPISL+ M+ PV+LCTG TY+R++I +W   G  TCP TMQ L      PN TL
Sbjct: 12  VPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKDFVPNLTL 71

Query: 126 YHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKG-QARVQALKELHQIA--AAHAS 182
             LI+ W           S  +   +   + T ++V     R+ +L+ L +I      + 
Sbjct: 72  QRLINIWSDSIGRRHNGDSPVLNPPSGREVPTKEEVNVLLERLMSLENLMKIVRFVKDSD 131

Query: 183 ARKTMVDEGGVALISSLLGPFTSHAVGSE----AVGVLVNLTLDSESKTNLMQPAK---- 234
           + +  + +  +  +  L+    +     E    A+ +L ++ +D E  +NLM        
Sbjct: 132 SNREFLSK-KMEFVPMLVDIIRTKKTKIELVIMAIRILDSIKVDRERLSNLMLANDGGDC 190

Query: 235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK--NKRHPNG 292
           ++ ++  +  G++E+KI   R+++ +  +   +  I     +L  +M+ +       P+ 
Sbjct: 191 LTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISITESSDPSL 250

Query: 293 ILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPS---LDPDCLQLALCILDALSSLPE 349
           I   LS L +I     VRS +++  A+ ++ ++L +    +    + +L +L+ LSS  E
Sbjct: 251 IEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLKLLETLSSKRE 310

Query: 350 GKLAL--KDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEE--CSSAAVDAGLAA 405
           G+L +   D    +   V+ L++VS   T++A++ILW +C +  E+         +    
Sbjct: 311 GRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKTVEETVERSNGVT 370

Query: 406 KLFLVIQSGCNPVLKQRSAELLKLCSLN 433
           KL +VIQS C+ +++Q + +L+K+   N
Sbjct: 371 KLLVVIQSNCSAMVRQMAKDLIKVLKFN 398

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 177/383 (46%), Gaps = 30/383 (7%)

Query: 66  IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL 125
           IP  F CPISLE M+DPV + TGQTYERS+I KW   G  TCP + + L    +TPN  L
Sbjct: 248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 307

Query: 126 YHLIHTWFSQKYLLMKK-----RSEDVQGRAS---------ELLGTLKKVKGQARVQALK 171
             LI  W     + + +     R+  + G +S          LL  L     + +  A  
Sbjct: 308 KSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAG 367

Query: 172 ELHQIAAAHASARKTMVDEGGVALISSLLG---PFTSHAVGSEAVGVLVNLTLDSESKTN 228
           EL  +A  +   R  + + G + L+  LL    P T       +V  L+NL+++  +K  
Sbjct: 368 ELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQE----HSVTALLNLSINEGNKGA 423

Query: 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKL--MEEKDFRPEIVSSHRLLIGLMRLVKN 286
           ++    ++ +V++L  GS+E + N    +  L  ++E         + + LI L+     
Sbjct: 424 IVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTR 483

Query: 287 KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346
           +    G     + + ++C+    +S  V  G V  L  LL       +  AL IL  LS+
Sbjct: 484 R----GKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILST 539

Query: 347 LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAK 406
             EGK A+ + A +IP  V ++   S    + A +ILW +C I   E  + A + G    
Sbjct: 540 NQEGKTAIAE-AESIPVLVEIIRTGSPRNRENAAAILWYLC-IGNIERLNVAREVGADVA 597

Query: 407 LFLVIQSGCNPVLKQRSAELLKL 429
           L  + ++G +   K+++A LL+L
Sbjct: 598 LKELTENGTDRA-KRKAASLLEL 619

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FLF4|PUB27_ARATH U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1

 Score =  119 bits (299), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 199/404 (49%), Gaps = 47/404 (11%)

Query: 66  IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL 125
           +P+ F CPISL+ M+ PV+LCTG TY+R++I +W   G  TCP TMQ L +    PN+TL
Sbjct: 10  VPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKDFIPNRTL 69

Query: 126 YHLIHTWF-SQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASAR 184
             LI  W  S +     + +E       E+   + +VK +   +  +E+  ++      R
Sbjct: 70  QRLIEIWSDSVRRRTCVESAELAAPTRDEIADAIDRVKIEKEERDDREV--LSKIVRFGR 127

Query: 185 KTMVDEGGVA-----------LISSLLGPFTSHA---VGSEAVGVLVNL---TLDSESKT 227
           ++  + G +A           LI+ +    TS A   V  EAV +L  +     D    +
Sbjct: 128 ESDDNRGFLAGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILSTIRSKVSDRRRFS 187

Query: 228 NLMQPA---KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLV 284
           NL+      ++S++V +   G+VE KI+C  L+E +  + + +  I     L+  LM+ +
Sbjct: 188 NLILTNGRDRLSVIVYLFKTGNVELKIDCAGLLEFIAVDAESKLLIAERDGLITELMKSI 247

Query: 285 KNKRHPNGILPGLSLLRSI-----CLLNEVRSLVVSIGAVPQ-----LVELLPSLDPDCL 334
                 + I   LS L +I       LN +R  +  IG V +        L  S+   CL
Sbjct: 248 SKDSDLSLIESSLSCLIAISSPKRVKLNLLREKL--IGDVTKLLSDSTSSLSVSVTEKCL 305

Query: 335 QLALCILDALSSLPEGKLAL----KDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA 390
           +L    L+ L+S  EG+  +     +C  T+   V+ LM+VS   T++A+++LWS+  + 
Sbjct: 306 KL----LEILASTKEGRSEICGGDGECLKTV---VKKLMKVSTAATEHAVTVLWSVSYLF 358

Query: 391 PEECSSAAVDA-GLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433
            E+ +  AV +     K+ L++QS C+P +++   +LLK+  +N
Sbjct: 359 KEDKALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVN 402

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  118 bits (296), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 172/385 (44%), Gaps = 31/385 (8%)

Query: 66  IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL 125
           IP  F CPISLE M+DPV + +GQTYER+ I KW   G  TCP T Q L   ++TPN  L
Sbjct: 256 IPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVL 315

Query: 126 YHLIHTWFSQKYLLMKKRSEDVQGRA-------------SELLGTLKKVKGQARVQALKE 172
             LI  W     +   K    ++ R               +L+  L     + +  A  E
Sbjct: 316 RSLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLAYGNPEDQRSAAGE 375

Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQP 232
           +  +A  +A  R  + + G + L+  LL    S  +   +V  L+NL++   +K  ++  
Sbjct: 376 IRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSR-IQEHSVTALLNLSICENNKGAIVSA 434

Query: 233 AKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK------N 286
             +  +V +L +GS+E + N    +        F   ++  +++ IG +  +       N
Sbjct: 435 GAIPGIVQVLKKGSMEARENAAATL--------FSLSVIDENKVTIGALGAIPPLVVLLN 486

Query: 287 KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346
           +    G     + L ++C+    +   +  G +P L  LL       +  AL IL  LSS
Sbjct: 487 EGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSS 546

Query: 347 LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAK 406
            PEGK A+   ++ +P+ V  +   S    + A ++L  +C   P+    A    GL   
Sbjct: 547 HPEGK-AIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQ-KLGLMGP 604

Query: 407 LFLVIQSGCNPVLKQRSAELLKLCS 431
           L  +  +G +   K+++A+LL+  S
Sbjct: 605 LIDLAGNGTDRG-KRKAAQLLERIS 628

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
359496878	447	PREDICTED: U-box domain-containing prote	0.993	1.0	0.831	0.0
356497007	449	PREDICTED: U-box domain-containing prote	0.997	1.0	0.782	0.0
356541596	449	PREDICTED: U-box domain-containing prote	0.997	1.0	0.784	0.0
357482529	471	U-box domain-containing protein [Medicag	0.982	0.938	0.783	0.0
297819644	445	U-box domain-containing protein [Arabido	0.988	1.0	0.755	0.0
18408953	448	U-box domain-containing protein 30 [Arab	0.995	1.0	0.755	0.0
21536926	448	unknown [Arabidopsis thaliana]	0.995	1.0	0.753	0.0
356511978	444	PREDICTED: U-box domain-containing prote	0.986	1.0	0.744	0.0
225458890	452	PREDICTED: U-box domain-containing prote	0.997	0.993	0.739	0.0
15239204	444	U-box domain-containing protein 31 [Arab	0.984	0.997	0.707	0.0

>gi|359496878|ref|XP_002267145.2| PREDICTED: U-box domain-containing protein 30 [Vitis vinifera]

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/450 (83%), Positives = 411/450 (91%), Gaps = 3/450 (0%)

Query: 1   MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAGVTGAGVGERLDLKKMIAE 60
           MPMFQ  ++D LVGF+G GDG +LDLDTAVKDGVL    G G    G+ E+LDLK+MI E
Sbjct: 1   MPMFQHYQKDGLVGFDGGGDGHVLDLDTAVKDGVL--GGGGGGVVGGIAEKLDLKRMIEE 58

Query: 61  LDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120
           LDL+EIPSVF+CPISLEPMQDPVTLCTGQTYERSNILKWFSLG  TCPTTMQELWDDSVT
Sbjct: 59  LDLSEIPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFSLGHLTCPTTMQELWDDSVT 118

Query: 121 PNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAH 180
           PNKTLYHLI++WFSQKYLLMKKRSEDVQGRASELL TLKKVKGQARVQALKELHQ+ AAH
Sbjct: 119 PNKTLYHLIYSWFSQKYLLMKKRSEDVQGRASELLETLKKVKGQARVQALKELHQVVAAH 178

Query: 181 ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD 240
           A+ARKT V+EGGVALIS+LLGPFTSHAVGSE +GVLVNLTLDSESK NLMQPAK+SL+VD
Sbjct: 179 ATARKT-VEEGGVALISALLGPFTSHAVGSEVIGVLVNLTLDSESKANLMQPAKISLMVD 237

Query: 241 MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL 300
           +LNEGS+ETKIN TRLIE LMEEKDFR EIVSSH LL+GLMRLVK+KRHPNG LPGL+LL
Sbjct: 238 LLNEGSIETKINSTRLIEMLMEEKDFRSEIVSSHSLLVGLMRLVKDKRHPNGNLPGLTLL 297

Query: 301 RSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANT 360
           R+ICL  +VR+L VSIGA+PQLVELLP+L+PDCL+ AL ILD LSSLPEG+LAL+DC NT
Sbjct: 298 RTICLHKQVRNLFVSIGAIPQLVELLPALNPDCLESALFILDTLSSLPEGRLALRDCLNT 357

Query: 361 IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLK 420
           IPN VRLLMRVSE CTQYAL+ILWS+CK+APEECSS AV+AGLAAKL LVIQSGCNPVLK
Sbjct: 358 IPNMVRLLMRVSESCTQYALAILWSVCKLAPEECSSIAVEAGLAAKLLLVIQSGCNPVLK 417

Query: 421 QRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
           QRSAELLKLCSLNYTDTTFISKCKLT+TIQ
Sbjct: 418 QRSAELLKLCSLNYTDTTFISKCKLTKTIQ 447

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497007|ref|XP_003517356.1| PREDICTED: U-box domain-containing protein 30-like [Glycine max]

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/450 (78%), Positives = 409/450 (90%), Gaps = 1/450 (0%)

Query: 1   MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAGVTGAGVGERLDLKKMIAE 60
           MPMFQP ++D++ G+EG  DGQILDLDTAVKDGVLGG  G  V G    E++DL KMI E
Sbjct: 1   MPMFQPCRKDMVTGYEGGADGQILDLDTAVKDGVLGGVEGGVVGGGVG-EKVDLGKMIEE 59

Query: 61  LDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120
           L+L E+PSVF+CPISLEPMQDP+TLCTGQTYERSNILKWF+LG +TCPTTMQELWDDSVT
Sbjct: 60  LELCEVPSVFICPISLEPMQDPITLCTGQTYERSNILKWFNLGHFTCPTTMQELWDDSVT 119

Query: 121 PNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAH 180
           PN TLY LIHTWFSQKYLLMKKRSEDVQGRASELL TLKKVKGQARVQALKE+HQ+ A+H
Sbjct: 120 PNTTLYRLIHTWFSQKYLLMKKRSEDVQGRASELLETLKKVKGQARVQALKEIHQLVASH 179

Query: 181 ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD 240
           A+ARK ++DEGGV+++SSLLGPFTSHAVGSE +G+LV LTLDSES+ NL+QPAKVSL+VD
Sbjct: 180 ATARKAVIDEGGVSVVSSLLGPFTSHAVGSEVIGILVTLTLDSESRKNLLQPAKVSLMVD 239

Query: 241 MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL 300
           +LNEGS+ETKINCTRLIE L+EEKDFR E++SSH LL+GLMRLVK+KRH NG+ PGLSLL
Sbjct: 240 ILNEGSIETKINCTRLIESLIEEKDFRSEVISSHSLLVGLMRLVKDKRHSNGVCPGLSLL 299

Query: 301 RSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANT 360
           R+ICL  EVR+L+VSIGAV QLVELL  ++PDC +LALC+LDAL+S+PEG++ALKDC+NT
Sbjct: 300 RTICLHKEVRNLLVSIGAVSQLVELLSGMEPDCTELALCVLDALASVPEGRVALKDCSNT 359

Query: 361 IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLK 420
           IP  V+LLMR+SE+CTQYALSILWS+CK++P+ECSS AVDAGLAAKL LVIQSGCNP+LK
Sbjct: 360 IPIMVKLLMRISENCTQYALSILWSVCKLSPDECSSIAVDAGLAAKLLLVIQSGCNPILK 419

Query: 421 QRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
           Q+SAELLKLCSLNY+DT FISKCKLTRTIQ
Sbjct: 420 QQSAELLKLCSLNYSDTIFISKCKLTRTIQ 449

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541596|ref|XP_003539260.1| PREDICTED: U-box domain-containing protein 30-like [Glycine max]

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/450 (78%), Positives = 409/450 (90%), Gaps = 1/450 (0%)

Query: 1   MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAGVTGAGVGERLDLKKMIAE 60
           MPMFQP ++D++ G+EG GDGQILDLDTAVKDGVLGG  G  + G    E++DL KMI E
Sbjct: 1   MPMFQPCRKDLVAGYEGGGDGQILDLDTAVKDGVLGGVEGGVLGGGVG-EKVDLGKMIEE 59

Query: 61  LDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120
           L+L E+PSVF+CPISLEPMQDPVTLCTGQTYERSNILKWF+LG +TCPTTMQELWDDSVT
Sbjct: 60  LELCEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHFTCPTTMQELWDDSVT 119

Query: 121 PNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAH 180
           PN TLY LIH WFSQKYLLMKKRSEDVQGRASELL TLKKVK QARVQALKELHQ+ A+H
Sbjct: 120 PNTTLYRLIHMWFSQKYLLMKKRSEDVQGRASELLETLKKVKSQARVQALKELHQLVASH 179

Query: 181 ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD 240
           A+ARKT++DEGGV+++SSLLGPFTSHAVGSE +G+LV LTLDSES+ NL+QPAKVSL+VD
Sbjct: 180 ATARKTVIDEGGVSVVSSLLGPFTSHAVGSEVIGILVTLTLDSESRKNLLQPAKVSLMVD 239

Query: 241 MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL 300
           +LNEGS+ETKINCTRLIE L+EEKDFR E++ SH LL+GLMRLVK+KRH NG+ PGLSLL
Sbjct: 240 ILNEGSIETKINCTRLIESLIEEKDFRSEVILSHSLLVGLMRLVKDKRHNNGVCPGLSLL 299

Query: 301 RSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANT 360
           R+ICL  EVR+L+VSIGAV QLVELL  ++PDCL+LALC+LDAL+S+PEG++ALKDC+NT
Sbjct: 300 RTICLHKEVRNLLVSIGAVSQLVELLSGMEPDCLELALCVLDALASVPEGRVALKDCSNT 359

Query: 361 IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLK 420
           IP  V+LLMR+SE+CTQYALSILWS+CK++PEECSS AVDAGLAAKL LVIQSGCNP+LK
Sbjct: 360 IPIMVKLLMRISENCTQYALSILWSVCKLSPEECSSIAVDAGLAAKLLLVIQSGCNPILK 419

Query: 421 QRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
           Q+SAELLKLCSLNY+DT F+SKCKLTRTIQ
Sbjct: 420 QQSAELLKLCSLNYSDTIFLSKCKLTRTIQ 449

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482529|ref|XP_003611551.1| U-box domain-containing protein [Medicago truncatula] gi|355512886|gb|AES94509.1| U-box domain-containing protein [Medicago truncatula]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/443 (78%), Positives = 401/443 (90%), Gaps = 1/443 (0%)

Query: 1   MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGT-VGAGVTGAGVGERLDLKKMIA 59
           MPM+QPSKRD++VG+EG GDGQILDLDTAVKDGVLGG   G  V    VGE+LDL+KMI 
Sbjct: 1   MPMYQPSKRDMVVGYEGGGDGQILDLDTAVKDGVLGGVDCGGIVGTGVVGEKLDLRKMIQ 60

Query: 60  ELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV 119
           EL+L E+PSVF+CPISLEPMQDPVTLCTGQTYER+NILKWF++G +TCPTTMQELWDDS+
Sbjct: 61  ELELCEVPSVFICPISLEPMQDPVTLCTGQTYERNNILKWFNMGHFTCPTTMQELWDDSI 120

Query: 120 TPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAA 179
           TPN TLY LI+TWFSQKYLLMKKRSEDVQGRASEL+ TLKKVKGQARV ALKELHQ+ + 
Sbjct: 121 TPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVHALKELHQVVSV 180

Query: 180 HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLV 239
           HA+ARK+++D GGV+++SSLLGPFTSHAVGSE +G+LV+LTLDSESK NLMQPAK+SL+V
Sbjct: 181 HATARKSVIDGGGVSVLSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMV 240

Query: 240 DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSL 299
           D+LNEGS+ETKINCTRLIE L+EEKDFR EI+SSH LL+GLMRLVK+KRH NGI PGLSL
Sbjct: 241 DILNEGSIETKINCTRLIETLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSNGICPGLSL 300

Query: 300 LRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCAN 359
           LR++C   EV+ L+VSIGAV QLVELL  +D DCL+LALC+LD+LSS+PEG++ALK+C N
Sbjct: 301 LRTVCFYKEVKILLVSIGAVSQLVELLSGMDHDCLELALCVLDSLSSIPEGRVALKECVN 360

Query: 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVL 419
           TIP  VRLLMR+SE CTQYALSILWS+CK+APEECSS AVDAGLAAKL LVIQSGCNP+L
Sbjct: 361 TIPIMVRLLMRISESCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPIL 420

Query: 420 KQRSAELLKLCSLNYTDTTFISK 442
           KQ+SAELLKLCSLNY+DT FISK
Sbjct: 421 KQQSAELLKLCSLNYSDTIFISK 443

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819644|ref|XP_002877705.1| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297323543|gb|EFH53964.1| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/450 (75%), Positives = 388/450 (86%), Gaps = 5/450 (1%)

Query: 1   MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAGVTGAGVGERLDLKKMIAE 60
           MPMFQP KRD L+GFEG GDGQ+LDLDTAVKD      V  GV G  V E+LDLKKMI E
Sbjct: 1   MPMFQPLKRDGLIGFEGGGDGQVLDLDTAVKD-----GVLGGVNGGVVDEKLDLKKMIKE 55

Query: 61  LDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120
           LDL +IPSVF+CPISLEPMQDPVTLCTGQTYER NI KWF+LG  TCPTTMQELWDD+VT
Sbjct: 56  LDLQDIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDDTVT 115

Query: 121 PNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAH 180
           PNKTL+HLI+TWFSQKY+LMKKRSEDVQGRA E+LGTLKK KGQARV AL EL QI  AH
Sbjct: 116 PNKTLHHLIYTWFSQKYVLMKKRSEDVQGRAIEILGTLKKAKGQARVHALSELKQIVVAH 175

Query: 181 ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD 240
             ARKT+V+EGGV++ISSLLGPFTSHAVGSE V +LV+L LDS+SK+ LMQPAKVSL+VD
Sbjct: 176 LMARKTVVEEGGVSVISSLLGPFTSHAVGSEVVAILVSLDLDSDSKSGLMQPAKVSLIVD 235

Query: 241 MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL 300
           MLN+GS ETKINC RLI+ L+EEK FR E+VSSH LL+GLMRLVK+KRH NG+ P L LL
Sbjct: 236 MLNDGSNETKINCARLIKGLVEEKGFRAELVSSHSLLVGLMRLVKDKRHRNGVSPALGLL 295

Query: 301 RSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANT 360
           + I +  +VR+L+VSIGAVPQLV++LPSLDP+CL+LAL +LDAL S  EG++A+KD ANT
Sbjct: 296 KPISVHKQVRNLMVSIGAVPQLVDILPSLDPECLELALFVLDALCSDMEGRVAVKDSANT 355

Query: 361 IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLK 420
           IP TVR+LMRVSE+CT YALSILWS+CK+APEECS  AV+ GLAAKL LVIQSGC+  LK
Sbjct: 356 IPYTVRVLMRVSENCTSYALSILWSVCKLAPEECSPLAVEVGLAAKLLLVIQSGCDAALK 415

Query: 421 QRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
           QRSAELLKLCSL+Y+DT FISKCKLTRTIQ
Sbjct: 416 QRSAELLKLCSLHYSDTMFISKCKLTRTIQ 445

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408953|ref|NP_566927.1| U-box domain-containing protein 30 [Arabidopsis thaliana] gi|122163922|sp|Q058P4.1|PUB30_ARATH RecName: Full=U-box domain-containing protein 30; AltName: Full=Plant U-box protein 30 gi|115646761|gb|ABJ17109.1| At3g49810 [Arabidopsis thaliana] gi|332645072|gb|AEE78593.1| U-box domain-containing protein 30 [Arabidopsis thaliana]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/450 (75%), Positives = 387/450 (86%), Gaps = 2/450 (0%)

Query: 1   MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAGVTGAGVGERLDLKKMIAE 60
           MPMFQP KRD L+GFEG GDGQ+LDLDTAVKDGVL      G     V E+LDLKKMI E
Sbjct: 1   MPMFQPLKRDGLIGFEGGGDGQVLDLDTAVKDGVL--GGVNGGGVGVVDEKLDLKKMIKE 58

Query: 61  LDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120
           LDL +IPSVF+CPISLEPMQDPVTLCTGQTYER NI KWF+LG  TCPTTMQELWDD+VT
Sbjct: 59  LDLQDIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDDTVT 118

Query: 121 PNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAH 180
           PNKTL+HLI+TWFSQKY+LMKKRSEDVQGRA E+LGTLKK KGQARV AL EL QI  AH
Sbjct: 119 PNKTLHHLIYTWFSQKYVLMKKRSEDVQGRAIEILGTLKKAKGQARVHALSELKQIVIAH 178

Query: 181 ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD 240
             ARKT+V+EGGV++ISSLLGPFTSHAVGSE V +LV+L LDS+SK+ LMQPAKVSL+VD
Sbjct: 179 LMARKTVVEEGGVSVISSLLGPFTSHAVGSEVVAILVSLDLDSDSKSGLMQPAKVSLIVD 238

Query: 241 MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL 300
           MLN+GS ETKINC RLI  L+EEK FR E+VSSH LL+GLMRLVK+KRH NG+ P L LL
Sbjct: 239 MLNDGSNETKINCARLIRGLVEEKGFRAELVSSHSLLVGLMRLVKDKRHRNGVSPALRLL 298

Query: 301 RSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANT 360
           + I +  +VRSL+VSIGAVPQLV++LPSLDP+CL+LAL +LDAL +  EG++A+KD ANT
Sbjct: 299 KPISVHKQVRSLMVSIGAVPQLVDILPSLDPECLELALFVLDALCTDVEGRVAVKDSANT 358

Query: 361 IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLK 420
           IP TVR+LMRVSE+CT YALSILWS+CK+APEECS  AV+ GLAAKL LVIQSGC+  LK
Sbjct: 359 IPYTVRVLMRVSENCTNYALSILWSVCKLAPEECSPLAVEVGLAAKLLLVIQSGCDAALK 418

Query: 421 QRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
           QRSAELLKLCSL+Y+DT FISKCKLTRTIQ
Sbjct: 419 QRSAELLKLCSLHYSDTMFISKCKLTRTIQ 448

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536926|gb|AAM61258.1| unknown [Arabidopsis thaliana]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/450 (75%), Positives = 386/450 (85%), Gaps = 2/450 (0%)

Query: 1   MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAGVTGAGVGERLDLKKMIAE 60
           MPMFQP KRD L+GFEG GDGQ+LDLDTAVKDGVL      G     V E+LDLKKMI E
Sbjct: 1   MPMFQPLKRDGLIGFEGGGDGQVLDLDTAVKDGVL--GGVNGGGVGVVDEKLDLKKMIKE 58

Query: 61  LDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120
           LDL +IPSVF+CPISLEPMQDPVTLCTGQTYER NI KWF+LG  TCPTTMQELWDD+VT
Sbjct: 59  LDLQDIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDDTVT 118

Query: 121 PNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAH 180
           PNKTL+HLI+TWFSQKY+LMKKRSEDVQGRA E+LGTLKK KGQARV AL EL QI  AH
Sbjct: 119 PNKTLHHLIYTWFSQKYVLMKKRSEDVQGRAIEILGTLKKAKGQARVHALSELKQIVVAH 178

Query: 181 ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD 240
             ARKT+V+EGGV++ISSLLGPFTSHAVGSE V +LV+L LDS+SK+ LMQPAKVSL+VD
Sbjct: 179 LMARKTVVEEGGVSVISSLLGPFTSHAVGSEVVAILVSLDLDSDSKSGLMQPAKVSLIVD 238

Query: 241 MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL 300
           MLN+GS ETKINC RLI  L+EEK FR E+VSSH LL+GLMRLVK+KRH NG+ P L LL
Sbjct: 239 MLNDGSNETKINCARLIRGLVEEKGFRAELVSSHSLLVGLMRLVKDKRHRNGVSPALRLL 298

Query: 301 RSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANT 360
           + I +  +VRSL+VSIGAVPQLV++L SLDP+CL+LAL +LDAL +  EG++A+KD ANT
Sbjct: 299 KPISVHKQVRSLMVSIGAVPQLVDILQSLDPECLELALFVLDALCTDVEGRVAVKDSANT 358

Query: 361 IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLK 420
           IP TVR+LMRVSE+CT YALSILWS+CK+APEECS  AV+ GLAAKL LVIQSGC+  LK
Sbjct: 359 IPYTVRVLMRVSENCTNYALSILWSVCKLAPEECSPLAVEVGLAAKLLLVIQSGCDAALK 418

Query: 421 QRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
           QRSAELLKLCSL+Y+DT FISKCKLTRTIQ
Sbjct: 419 QRSAELLKLCSLHYSDTMFISKCKLTRTIQ 448

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511978|ref|XP_003524698.1| PREDICTED: U-box domain-containing protein 30-like [Glycine max]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/450 (74%), Positives = 387/450 (86%), Gaps = 6/450 (1%)

Query: 1   MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAGVTGAGVGERLDLKKMIAE 60
           MPMF+P  +       G  +GQILDLDTAVKDGVLGG V  GV G GVGE+LDL KMI E
Sbjct: 1   MPMFEPHCK------RGGVEGQILDLDTAVKDGVLGGGVDTGVVGTGVGEKLDLGKMIEE 54

Query: 61  LDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120
           LDL E+PSVF+CPISLEPMQDPVTLCTGQTYER NILKWFSLG +TCPTTMQELWD S+T
Sbjct: 55  LDLCEVPSVFICPISLEPMQDPVTLCTGQTYERCNILKWFSLGHFTCPTTMQELWDGSLT 114

Query: 121 PNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAH 180
           PN TL+ LI TWFSQKYL+MKKRSEDV GR  E++ TLKKVKGQARV ALKELHQ+ AAH
Sbjct: 115 PNTTLHRLISTWFSQKYLVMKKRSEDVLGRVLEIVETLKKVKGQARVSALKELHQVVAAH 174

Query: 181 ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD 240
           A+ARK +VD GGV+++SSLL PFTSH VG+E +GVLV+L+LD ESK +L+QPAKVSL+VD
Sbjct: 175 ATARKALVDGGGVSVVSSLLSPFTSHTVGAEVIGVLVSLSLDCESKRSLVQPAKVSLMVD 234

Query: 241 MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL 300
           +LNEGS+ETKINCT LIE L+EEKDF+  I  SH LL+GLMRLVK+KRH NGI  GL LL
Sbjct: 235 ILNEGSIETKINCTWLIETLIEEKDFQMVIFRSHSLLVGLMRLVKDKRHTNGICSGLRLL 294

Query: 301 RSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANT 360
           R++CL +EV+SL+VSIGAV QLV+LLP L+ +CL+LAL ILDAL+S+PEG LALKDC+NT
Sbjct: 295 RTLCLHSEVKSLLVSIGAVSQLVQLLPGLEHECLELALSILDALASVPEGILALKDCSNT 354

Query: 361 IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLK 420
           IP  V+LLMRVSE+CTQYALSILWS+C +AP+ECS  AV+AGLAAKL LVIQSGCNP+LK
Sbjct: 355 IPVMVKLLMRVSENCTQYALSILWSVCNVAPDECSLIAVEAGLAAKLLLVIQSGCNPILK 414

Query: 421 QRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
           Q+S ELLKLCSLNY+DT FISKCKLTRTIQ
Sbjct: 415 QQSTELLKLCSLNYSDTIFISKCKLTRTIQ 444

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458890|ref|XP_002285420.1| PREDICTED: U-box domain-containing protein 30 [Vitis vinifera]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/453 (73%), Positives = 393/453 (86%), Gaps = 4/453 (0%)

Query: 1   MPMFQPS--KRDVLVGFEGSGDG-QILDLDTAVKDGVLGGTVGAGVTGAGVGERLDLKKM 57
           MPM+QPS  +RD  V ++  GDG  +LDL+TAVKDG+LGG  G         E+LDLKKM
Sbjct: 1   MPMYQPSGRRRDGGVMYDVGGDGGHVLDLETAVKDGILGGGGGVVCGSGVT-EKLDLKKM 59

Query: 58  IAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDD 117
           I +LD  ++PSVF+CPISLEPMQDPVT+CTGQTYERSNI+KWFS+G +TCPTTMQELWDD
Sbjct: 60  IEDLDSIDVPSVFICPISLEPMQDPVTICTGQTYERSNIVKWFSMGHFTCPTTMQELWDD 119

Query: 118 SVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIA 177
           S+TPNKTLY LI++WFSQKYL+MKKRSEDVQGRA E+L TLKKVKGQAR+QALKEL Q+ 
Sbjct: 120 SITPNKTLYQLIYSWFSQKYLVMKKRSEDVQGRALEVLETLKKVKGQARIQALKELRQVV 179

Query: 178 AAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSL 237
           + HASA+KT+ D GG+ LISSLLGPFTSHAVGSE +G+LVNL+LDSESK+NLMQPAK+SL
Sbjct: 180 SIHASAKKTVADNGGIGLISSLLGPFTSHAVGSEVIGILVNLSLDSESKSNLMQPAKISL 239

Query: 238 LVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGL 297
           +VDMLNEGS+ETKINCT+LIE LME +DF  EIV S  LL+GL+RLVK+KRH NGIL GL
Sbjct: 240 MVDMLNEGSIETKINCTKLIEILMEGRDFESEIVPSLSLLVGLLRLVKDKRHQNGILAGL 299

Query: 298 SLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC 357
           +LL++ICL   VR+ VVSIGAVPQLVELLP+L+P CL+LAL IL+ LS+LP+G+LALKDC
Sbjct: 300 ALLKTICLHEPVRNSVVSIGAVPQLVELLPNLNPACLELALYILEVLSTLPQGRLALKDC 359

Query: 358 ANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNP 417
            N IPN V+LLMRVSE CTQ AL+IL ++CK+APEEC+S AV+AGLAAKL LVIQSGCNP
Sbjct: 360 PNMIPNVVKLLMRVSESCTQLALAILSAVCKLAPEECASLAVEAGLAAKLLLVIQSGCNP 419

Query: 418 VLKQRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
           VLKQR+AELLKLCSLNYT T FISKCKLTRTIQ
Sbjct: 420 VLKQRAAELLKLCSLNYTATIFISKCKLTRTIQ 452

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239204|ref|NP_201393.1| U-box domain-containing protein 31 [Arabidopsis thaliana] gi|75170648|sp|Q9FHN9.1|PUB31_ARATH RecName: Full=U-box domain-containing protein 31; AltName: Full=Plant U-box protein 31 gi|9759576|dbj|BAB11139.1| unnamed protein product [Arabidopsis thaliana] gi|332010740|gb|AED98123.1| U-box domain-containing protein 31 [Arabidopsis thaliana]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/451 (70%), Positives = 378/451 (83%), Gaps = 8/451 (1%)

Query: 1   MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDGVLGGTVGAG-VTGAGVGERLDLKKMIA 59
           MPMFQPSK        G  DG ILDL +AVKDGVLGG  G   V      ++LDLK+MI+
Sbjct: 1   MPMFQPSK-------NGGFDGHILDLHSAVKDGVLGGGDGKFLVVVTDEKKKLDLKEMIS 53

Query: 60  ELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV 119
           EL+L EIPSVF+CPISLEPMQDPVTLCTGQTYERSNILKWF++G  TCPTTMQELWDD V
Sbjct: 54  ELELPEIPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELWDDLV 113

Query: 120 TPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAA 179
           TPNKTL+ LI+TWFSQKY+LMKKRSEDVQGRA E+LGTL+K KG+A+V AL EL Q+  A
Sbjct: 114 TPNKTLHQLIYTWFSQKYVLMKKRSEDVQGRAIEILGTLRKAKGKAKVHALSELKQVVMA 173

Query: 180 HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLV 239
           HA A+KT+VDEGGV +ISSLL PFTSHAVGSEA+ +LVNL LDS+SK  LMQPA+VSL+V
Sbjct: 174 HAIAKKTVVDEGGVFVISSLLSPFTSHAVGSEAIAILVNLELDSDSKAGLMQPARVSLMV 233

Query: 240 DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSL 299
           DMLN+GS+ETKINC RLI +L+EEK FR E+VSSH LL+GLMRLVK++R  NG+ P L+L
Sbjct: 234 DMLNDGSIETKINCARLIGRLVEEKGFRAELVSSHSLLVGLMRLVKDRRRRNGVSPALTL 293

Query: 300 LRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCAN 359
           L+S+ +  +VR+L+V IGAVPQLV++LP LD +CL+ AL +LD+L    EG++ALKD  N
Sbjct: 294 LKSVSVHKQVRNLLVRIGAVPQLVDVLPCLDVECLESALFVLDSLCLESEGRIALKDSVN 353

Query: 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVL 419
           TIP+TVRLLM+VSE CT YA+SILWS+CK+A EECSS AV+ GLAAKL LVIQSGC+P L
Sbjct: 354 TIPHTVRLLMKVSEKCTNYAISILWSVCKLASEECSSLAVEVGLAAKLLLVIQSGCDPAL 413

Query: 420 KQRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
           KQRSAELLKLCSL+Y+D+ FISKCKLTRTIQ
Sbjct: 414 KQRSAELLKLCSLHYSDSMFISKCKLTRTIQ 444

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
TAIR|locus:2097390	448	AT3G49810 [Arabidopsis thalian	0.995	1.0	0.744	2.8e-176
TAIR|locus:2152049	444	AT5G65920 [Arabidopsis thalian	0.984	0.997	0.694	9e-164
TAIR|locus:2039265	411	PUB23 "plant U-box 23" [Arabid	0.84	0.919	0.259	1.8e-32
TAIR|locus:2144846	409	AT5G09800 [Arabidopsis thalian	0.842	0.926	0.267	1.3e-31
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.791	0.582	0.291	2.4e-30
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.791	0.563	0.289	1.2e-29
UNIPROTKB|Q0IMG9	694	SPL11 "E3 ubiquitin-protein li	0.802	0.520	0.277	1.6e-28
TAIR|locus:2093974	415	PUB29 "plant U-box 29" [Arabid	0.493	0.534	0.246	2.7e-28
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.797	0.586	0.271	2.9e-28
TAIR|locus:2174814	420	CMPG2 ""CYS, MET, PRO, and GLY	0.148	0.159	0.507	4.2e-28

TAIR|locus:2097390 AT3G49810 [Arabidopsis thaliana (taxid:3702)]

 Score = 1712 (607.7 bits), Expect = 2.8e-176, P = 2.8e-176
 Identities = 335/450 (74%), Positives = 382/450 (84%)

Query:     1 MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDXXXXXXXXXXXXXXXXXERLDLKKMIAE 60
             MPMFQP KRD L+GFEG GDGQ+LDLDTAVKD                 E+LDLKKMI E
Sbjct:     1 MPMFQPLKRDGLIGFEGGGDGQVLDLDTAVKDGVLGGVNGGGVGVVD--EKLDLKKMIKE 58

Query:    61 LDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120
             LDL +IPSVF+CPISLEPMQDPVTLCTGQTYER NI KWF+LG  TCPTTMQELWDD+VT
Sbjct:    59 LDLQDIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDDTVT 118

Query:   121 PNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAH 180
             PNKTL+HLI+TWFSQKY+LMKKRSEDVQGRA E+LGTLKK KGQARV AL EL QI  AH
Sbjct:   119 PNKTLHHLIYTWFSQKYVLMKKRSEDVQGRAIEILGTLKKAKGQARVHALSELKQIVIAH 178

Query:   181 ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD 240
               ARKT+V+EGGV++ISSLLGPFTSHAVGSE V +LV+L LDS+SK+ LMQPAKVSL+VD
Sbjct:   179 LMARKTVVEEGGVSVISSLLGPFTSHAVGSEVVAILVSLDLDSDSKSGLMQPAKVSLIVD 238

Query:   241 MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL 300
             MLN+GS ETKINC RLI  L+EEK FR E+VSSH LL+GLMRLVK+KRH NG+ P L LL
Sbjct:   239 MLNDGSNETKINCARLIRGLVEEKGFRAELVSSHSLLVGLMRLVKDKRHRNGVSPALRLL 298

Query:   301 RSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANT 360
             + I +  +VRSL+VSIGAVPQLV++LPSLDP+CL+LAL +LDAL +  EG++A+KD ANT
Sbjct:   299 KPISVHKQVRSLMVSIGAVPQLVDILPSLDPECLELALFVLDALCTDVEGRVAVKDSANT 358

Query:   361 IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLK 420
             IP TVR+LMRVSE+CT YALSILWS+CK+APEECS  AV+ GLAAKL LVIQSGC+  LK
Sbjct:   359 IPYTVRVLMRVSENCTNYALSILWSVCKLAPEECSPLAVEVGLAAKLLLVIQSGCDAALK 418

Query:   421 QRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
             QRSAELLKLCSL+Y+DT FISKCKLTRTIQ
Sbjct:   419 QRSAELLKLCSLHYSDTMFISKCKLTRTIQ 448

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2152049 AT5G65920 [Arabidopsis thaliana (taxid:3702)]

 Score = 1594 (566.2 bits), Expect = 9.0e-164, P = 9.0e-164
 Identities = 313/451 (69%), Positives = 372/451 (82%)

Query:     1 MPMFQPSKRDVLVGFEGSGDGQILDLDTAVKDXXXXXXXXXXXXXXXXXER-LDLKKMIA 59
             MPMFQPSK     GF    DG ILDL +AVKD                 ++ LDLK+MI+
Sbjct:     1 MPMFQPSKNG---GF----DGHILDLHSAVKDGVLGGGDGKFLVVVTDEKKKLDLKEMIS 53

Query:    60 ELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV 119
             EL+L EIPSVF+CPISLEPMQDPVTLCTGQTYERSNILKWF++G  TCPTTMQELWDD V
Sbjct:    54 ELELPEIPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELWDDLV 113

Query:   120 TPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAA 179
             TPNKTL+ LI+TWFSQKY+LMKKRSEDVQGRA E+LGTL+K KG+A+V AL EL Q+  A
Sbjct:   114 TPNKTLHQLIYTWFSQKYVLMKKRSEDVQGRAIEILGTLRKAKGKAKVHALSELKQVVMA 173

Query:   180 HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLV 239
             HA A+KT+VDEGGV +ISSLL PFTSHAVGSEA+ +LVNL LDS+SK  LMQPA+VSL+V
Sbjct:   174 HAIAKKTVVDEGGVFVISSLLSPFTSHAVGSEAIAILVNLELDSDSKAGLMQPARVSLMV 233

Query:   240 DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSL 299
             DMLN+GS+ETKINC RLI +L+EEK FR E+VSSH LL+GLMRLVK++R  NG+ P L+L
Sbjct:   234 DMLNDGSIETKINCARLIGRLVEEKGFRAELVSSHSLLVGLMRLVKDRRRRNGVSPALTL 293

Query:   300 LRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCAN 359
             L+S+ +  +VR+L+V IGAVPQLV++LP LD +CL+ AL +LD+L    EG++ALKD  N
Sbjct:   294 LKSVSVHKQVRNLLVRIGAVPQLVDVLPCLDVECLESALFVLDSLCLESEGRIALKDSVN 353

Query:   360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVL 419
             TIP+TVRLLM+VSE CT YA+SILWS+CK+A EECSS AV+ GLAAKL LVIQSGC+P L
Sbjct:   354 TIPHTVRLLMKVSEKCTNYAISILWSVCKLASEECSSLAVEVGLAAKLLLVIQSGCDPAL 413

Query:   420 KQRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
             KQRSAELLKLCSL+Y+D+ FISKCKLTRTIQ
Sbjct:   414 KQRSAELLKLCSLHYSDSMFISKCKLTRTIQ 444

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2039265 PUB23 "plant U-box 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 102/393 (25%), Positives = 192/393 (48%)

Query:    65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRY-TCPTTMQELWDDSVTPNK 123
             EIP  F+CPISLE M+DPV + TG TY+R +I KW   G+  +CP T Q++ D  +TPN 
Sbjct:    11 EIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADLTPNH 70

Query:   124 TLYHLIHTW--FSQKYLLMKKRSEDVQGRASELLGTLKKVKG--QARVQALKELHQIAAA 179
             TL  LI +W   +  Y + +  +       SE+   ++      + +V+ LK L QI + 
Sbjct:    71 TLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRDSASSHENQVKCLKRLRQIVSE 130

Query:   180 HASARKTMVDEGGVALISSLLGPFTSH-AVGSEAVGVLVNLTLDSESKTNLMQPAK---- 234
             +A+ ++ +   G    +++++   + + ++  EA+ +L +L        NL+   K    
Sbjct:   131 NATNKRCLEAAGVPEFLANIVSNDSENGSLTDEALNLLYHLETSETVLKNLLNNKKDNNI 190

Query:   235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGIL 294
             V  L  ++  G  E+++  T L++ ++E  D    +     +   +++++ ++       
Sbjct:   191 VKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLKPEVFTEVVQILDDRISQKATK 250

Query:   295 PGLSLLRSICLLNEVRSLVVSIGAVPQLVELL--PSLDPDCL--QLALCILDALSSLPEG 350
               + +L +IC     R   V  G +  ++ELL   S   +    ++A+ +LD L    EG
Sbjct:   251 AAMHILVNICPWGRNRHKAVEAGVISVIIELLMDESFTSERRGPEMAMVVLDLLCQCAEG 310

Query:   351 KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKI-APEECSSAAVDAGLAAKLFL 409
             +    +    I    + ++RVS+  +  A+ +L S+ +  A        +  G+ AKL L
Sbjct:   311 RAEFLNHGAAIAVVCKKILRVSQTASDRAVRVLLSVGRFCATPALLHEMLQLGVVAKLCL 370

Query:   410 VIQSGCNPVLKQRSAELLKLCSLNYTDTTFISK 442
             V+Q  C    K+++ ELLKL +  + D+  + K
Sbjct:   371 VLQVSCGGKTKEKAKELLKLHARVWKDSPCLPK 403

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2144846 AT5G09800 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 109/408 (26%), Positives = 193/408 (47%)

Query:    60 ELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV 119
             +L +  +P  F CPISL+ M+ PV+L TG TY+R +I +W   G  TCP TMQ L +   
Sbjct:     5 DLYITTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQNKEF 64

Query:   120 TPNKTLYHLIHTWFSQKYLLMKKRS-EDVQGRASELLGTLKK--VKGQARVQALKELHQI 176
              PN TL+ LI  W           S E       E+   +++  ++  AR + L+     
Sbjct:    65 VPNLTLHRLIDHWSDSINRRADSESPESDTPTRDEINAAIERFRIENDARSKILR----F 120

Query:   177 AAAHASARKTMVDEGG-VALISSLLGPFTSHA------VGSEAVGVLVNLT---LDSESK 226
             A      R+ +  +   VA++  L+    + +      VG EAV +L  +     D    
Sbjct:   121 ARESDENREFLAGKDDFVAMLVDLISDSRNFSDSQLLLVG-EAVKILSMIRRKIFDRRRL 179

Query:   227 TNLMQPAKVSLLVD---MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRL 283
             +NL+       L     ++  G+ + KI+C+ ++E +  + + +  I     L+  +++L
Sbjct:   180 SNLILTNGGDCLTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKL 239

Query:   284 VKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL--PSLDPDCLQLALCIL 341
             + +    + I   LSLL +I     V+  ++    V +L  LL  P+      +  L +L
Sbjct:   240 ISSDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTTSVSVTEKCLKLL 299

Query:   342 DALSSLPEGKLALKD--CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEE-CSSAA 398
             +A+SS  EG+  + D  C  T+ N    LM+VS   T++A+++LWS+C +  E+    A 
Sbjct:   300 EAISSCKEGRSEICDGVCVETVVNK---LMKVSTAATEHAVTVLWSVCYLFKEKKAQDAV 356

Query:   399 VDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISKCKLT 446
             +      K+ L++QS C+  ++    +LLK+  +N      + + K T
Sbjct:   357 IRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVNSRSCLSVYETKTT 404

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 341 (125.1 bits), Expect = 2.4e-30, P = 2.4e-30
 Identities = 110/378 (29%), Positives = 183/378 (48%)

Query:    66 IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL 125
             IP  F CPISLE MQDPV + +GQTYERS I KW   G  TCP T Q L   S+TPN  L
Sbjct:   228 IPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVL 287

Query:   126 YHLIHTWFSQKYLLM---KKRSEDVQGRASE------LLGTLKKVK-GQARVQ--ALKEL 173
               LI  W     + +   K+ S D +   S       L+  + +++ G    Q  A  E+
Sbjct:   288 KSLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEI 347

Query:   174 HQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPA 233
               +A  + + R  + + G + L+ +LL   +       AV  L+NL++   +K +++   
Sbjct:   348 RLLAKRNVNNRICIAEAGAIPLLVNLLSS-SDPRTQEHAVTALLNLSIHENNKASIVDSH 406

Query:   234 KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGI 293
              +  +V++L  GS+ET+ N    +  L    D     + +   +  L+ L+ +   P G 
Sbjct:   407 AIPKIVEVLKTGSMETRENAAATLFSL-SVVDENKVTIGAAGAIPPLINLLCDGS-PRGK 464

Query:   294 LPGLSLLRSICLL--NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGK 351
                 + + ++C+   N+VR+  V  G V  L+  L       +  AL +L  L+  PEGK
Sbjct:   465 KDAATAIFNLCIYQGNKVRA--VKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGK 522

Query:   352 LALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVI 411
             + +   +  IP  V ++   S    + A +ILW +C  A  E + AA  AG+   L  + 
Sbjct:   523 IVIAR-SEPIPPLVEVIKTGSPRNRENAAAILWLLCS-ADTEQTLAAKAAGVEDALKELS 580

Query:   412 QSGCNPVLKQRSAELLKL 429
             ++G +   K++++ +L+L
Sbjct:   581 ETGTDRA-KRKASSILEL 597

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 1.2e-29, P = 1.2e-29
 Identities = 110/380 (28%), Positives = 179/380 (47%)

Query:    66 IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL 125
             IP  F CPISLE M+DPV + TGQTYERS+I KW   G  TCP + + L    +TPN  L
Sbjct:   248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 307

Query:   126 YHLIHTWFSQKYLLMKK-----RSEDVQGRASE------LLGTLKKV-KGQARVQ--ALK 171
               LI  W     + + +     R+  + G +S       +L  L+K+  G    Q  A  
Sbjct:   308 KSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAG 367

Query:   172 ELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQ 231
             EL  +A  +   R  + + G + L+  LL           +V  L+NL+++  +K  ++ 
Sbjct:   368 ELRLLAKRNVDNRVCIAEAGAIPLLVELLSS-PDPRTQEHSVTALLNLSINEGNKGAIVD 426

Query:   232 PAKVSLLVDMLNEGSVETKINCTRLIEKL--MEEKDFRPEIVSSHRLLIGLMRLVKNKRH 289
                ++ +V++L  GS+E + N    +  L  ++E         + + LI L+   +  R 
Sbjct:   427 AGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLE--EGTRR 484

Query:   290 PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPE 349
               G     + + ++C+    +S  V  G V  L  LL       +  AL IL  LS+  E
Sbjct:   485 --GKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQE 542

Query:   350 GKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFL 409
             GK A+ + A +IP  V ++   S    + A +ILW +C I   E  + A + G    L  
Sbjct:   543 GKTAIAE-AESIPVLVEIIRTGSPRNRENAAAILWYLC-IGNIERLNVAREVGADVALKE 600

Query:   410 VIQSGCNPVLKQRSAELLKL 429
             + ++G +   K+++A LL+L
Sbjct:   601 LTENGTDRA-KRKAASLLEL 619

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 326 (119.8 bits), Expect = 1.6e-28, P = 1.6e-28
 Identities = 105/378 (27%), Positives = 178/378 (47%)

Query:    66 IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL 125
             IP  F CPISLE M+DPV + TGQTYER+ I KW + G +TCPTT Q++   ++TPN  L
Sbjct:   273 IPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVL 332

Query:   126 YHLIHTWFSQKYLLMKKRSEDVQG-----RASE------LLGTLKKVKGQARVQALKELH 174
               LI  W     +   KRS           +SE      LL  L     + +  A  EL 
Sbjct:   333 RSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELR 392

Query:   175 QIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAK 234
              +A  +A+ R  + + G + L+ SLL   +       AV  L+NL++  ++K +++    
Sbjct:   393 LLAKRNANNRICIAEAGAIPLLLSLLSS-SDLRTQEHAVTALLNLSIHEDNKASIISSGA 451

Query:   235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGIL 294
             V  +V +L  GS+E + N    +  L    +++  I      +  L+ L+  +    G  
Sbjct:   452 VPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTI-GGMGAIPALVVLL-GEGSQRGKK 509

Query:   295 PGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLAL 354
                + L ++C+    +   +  G VP ++ L+ +     +  A+ IL  LSS PEGK A+
Sbjct:   510 DAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAI 569

Query:   355 KDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSA-AVDAGLAAKLFLVIQS 413
                A  +P  V ++   +    + A +++  +C         A A + G+   L  +  +
Sbjct:   570 -GAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALN 628

Query:   414 GCNPVLKQRSAELLKLCS 431
             G +   K+++ +LL+  S
Sbjct:   629 GTDRG-KRKAVQLLERMS 645

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2093974 PUB29 "plant U-box 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 2.7e-28, Sum P(2) = 2.7e-28
 Identities = 58/235 (24%), Positives = 123/235 (52%)

Query:   212 AVGVLVNLTLDSESKTNLMQPAK----VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR 267
             A+ +L ++ +D E  +NLM        ++ ++  +  G++E+KI   R+++ +  +   +
Sbjct:   164 AIRILDSIKVDRERLSNLMLANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSK 223

Query:   268 PEIVSSHRLLIGLMRLVK--NKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVEL 325
               I     +L  +M+ +       P+ I   LS L +I     VRS +++  A+ ++ ++
Sbjct:   224 LMIAERDGVLTEMMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDI 283

Query:   326 LPS---LDPDCLQLALCILDALSSLPEGKLAL--KDCANTIPNTVRLLMRVSEDCTQYAL 380
             L +    +    + +L +L+ LSS  EG+L +   D    +   V+ L++VS   T++A+
Sbjct:   284 LLTETLTNVAVTEKSLKLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAV 343

Query:   381 SILWSICKIAPEECS-SAAVD-AGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433
             +ILW +C +  E+ +    V+ +    KL +VIQS C+ +++Q + +L+K+   N
Sbjct:   344 TILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLKFN 398

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 2.9e-28, P = 2.9e-28
 Identities = 103/379 (27%), Positives = 186/379 (49%)

Query:    62 DLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTP 121
             D   IP  F+CP+SLE M+DPV + TGQTYER+ I +W   G  TCP T Q+L + ++TP
Sbjct:   237 DKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTP 296

Query:   122 NKTLYHLIHTWFSQKYL-----LMKKRSEDVQGRASELLGTLKKVKGQA---RVQALKEL 173
             N  L  LI  W ++  +      +  R+++  G  S +   ++++  ++   R  A+ E+
Sbjct:   297 NYVLRSLISRWCAEHNIEQPAGYINGRTKN-SGDMSVIRALVQRLSSRSTEDRRNAVSEI 355

Query:   174 HQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSE--AVGVLVNLTLDSESKTNLMQ 231
               ++      R  + + G + ++ +LL   TS  V ++  A+  ++NL++   +K  +M 
Sbjct:   356 RSLSKRSTDNRILIAEAGAIPVLVNLL---TSEDVATQENAITCVLNLSIYENNKELIMF 412

Query:   232 PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPN 291
                V+ +V +L  G++E + N    +  L    D    I+     +  L+ L++N   P 
Sbjct:   413 AGAVTSIVQVLRAGTMEARENAAATLFSL-SLADENKIIIGGSGAIPALVDLLENGT-PR 470

Query:   292 GILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLP-SLDPDCLQLALCILDALSSLPEG 350
             G     + L ++C+ +  +   V  G V  LV++L  S     +  AL IL  L++  + 
Sbjct:   471 GKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDA 530

Query:   351 KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLV 410
             K A+   ANT+P  + +L        + A +IL S+CK   E+  +     G    L  +
Sbjct:   531 KSAIVK-ANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEKLITIG-RLGAVVPLMDL 588

Query:   411 IQSGCNPVLKQRSAELLKL 429
              ++G     K+++  LL+L
Sbjct:   589 SKNGTERG-KRKAISLLEL 606

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2174814 CMPG2 ""CYS, MET, PRO, and GLY protein 2"" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-28, Sum P(3) = 4.2e-28
 Identities = 34/67 (50%), Positives = 45/67 (67%)

Query:    66 IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL 125
             +P+ F CPISL+ M+ PV+LCTG TY+R++I +W   G  TCP TMQ L +    PN+TL
Sbjct:    10 VPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKDFIPNRTL 69

Query:   126 YHLIHTW 132
               LI  W
Sbjct:    70 QRLIEIW 76

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FHN9	PUB31_ARATH	6, ., 3, ., 2, ., -	0.7073	0.9844	0.9977	no	no
Q058P4	PUB30_ARATH	6, ., 3, ., 2, ., -	0.7555	0.9955	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00010592001 SubName- Full=Chromosome chr7 scaffold_270, whole genome shotgun sequence; (447 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	450
smart00504	63	smart00504, Ubox, Modified RING finger domain	2e-22
pfam04564	73	pfam04564, U-box, U-box domain	2e-12
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	3e-06
COG5113	929	COG5113, UFD2, Ubiquitin fusion degradation protei	2e-05
pfam11789	57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	2e-04
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	0.001

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 89.6 bits (223), Expect = 2e-22
 Identities = 32/63 (50%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 70  FVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLI 129
           F+CPISLE M+DPV L +GQTYERS I KW      T P T Q L  + + PN  L   I
Sbjct: 2   FLCPISLEVMKDPVILPSGQTYERSAIEKWLLSHG-TDPVTGQPLTHEDLIPNLALKSAI 60

Query: 130 HTW 132
             W
Sbjct: 61  QEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 28/71 (39%), Positives = 37/71 (52%)

Query: 66  IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL 125
           IP  F+ PI+LE M+DPV L +G TY+RS I +       T P T + L  D + PN  L
Sbjct: 1   IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60

Query: 126 YHLIHTWFSQK 136
              I  W  + 
Sbjct: 61  KEKIDAWLEEN 71

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 66  IPSVFVCPISLEPMQD----PVTLCTGQTYERSNILKWF-SLGRYTCPT 109
             S+FVCPIS E M D    PV L  G  Y R  + K   + G++ CP 
Sbjct: 7   FHSIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCPY 55

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 50  ERLDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCT-GQTYERSNILKWFSLGRYTCP 108
           E++ + + + E D+ ++P  F+ P+    M+DPV L T   T +RS I K   L   T P
Sbjct: 835 EKVRVIEAVEEEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTI-KAHLLSDGTDP 893

Query: 109 TTMQELWDDSVTPNKTLYHLIHTWFSQK 136
                L  D VTPN  L   I+ ++  K
Sbjct: 894 FNRMPLTLDDVTPNAELREKINRFYKCK 921

Length = 929

>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 70  FVCPISLEPMQDPVT--LCTGQTYERSNILKWFSLGRYT-CP 108
             CP++L+P ++PVT   C    +E+  IL      +   CP
Sbjct: 12  LTCPLTLQPFEEPVTSKKC-NHVFEKDAILSMLRRNKTVKCP 52

Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger. Length = 57

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 2/111 (1%)

Query: 153 ELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEA 212
            L+  L       + +A   L  ++A +    + +V+ GG+  +  LL       V   A
Sbjct: 11  ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-SEDEEVVKAA 69

Query: 213 VGVLVNLTLDSESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLME 262
           +  L NL    E    ++ +   V  LV++L+  + + + N T  +  L  
Sbjct: 70  LWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	450
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.95
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.94
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.94
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.93
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.91
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.88
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.87
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.85
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.8
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.77
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.77
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.76
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.75
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.73
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.72
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.54
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.52
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.44
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.38
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.3
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.29
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.24
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.23
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.22
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.16
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.14
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.14
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.12
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.11
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.96
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.95
PRK09687	280	putative lyase; Provisional	98.93
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.92
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.87
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.81
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.79
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.74
PRK09687	280	putative lyase; Provisional	98.74
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.73
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.73
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.71
PHA02929	238	N1R/p28-like protein; Provisional	98.69
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.69
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.66
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.65
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.65
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.63
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.63
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.63
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.6
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.59
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.58
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.57
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.53
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.52
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.48
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.47
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.43
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.43
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.41
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.41
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	98.39
PHA02926	242	zinc finger-like protein; Provisional	98.32
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.32
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.31
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.3
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.29
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	98.24
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.18
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.18
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.14
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.14
PF14634	44	zf-RING_5: zinc-RING finger domain	98.12
PF05536	543	Neurochondrin: Neurochondrin	98.07
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.06
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.04
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.0
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.99
PTZ00429	746	beta-adaptin; Provisional	97.96
KOG2660	331	consensus Locus-specific chromosome binding protei	97.96
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.95
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.91
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.89
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.88
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.87
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.87
PF05536	543	Neurochondrin: Neurochondrin	97.86
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.86
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.85
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.84
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.83
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.83
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.82
PTZ00429	746	beta-adaptin; Provisional	97.81
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.8
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.79
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.77
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.69
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.62
KOG0289	506	consensus mRNA splicing factor [General function p	97.61
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.56
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.53
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.48
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.42
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.42
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.39
TIGR02270	410	conserved hypothetical protein. Members are found	97.38
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.32
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.25
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.23
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.23
COG5152	259	Uncharacterized conserved protein, contains RING a	97.22
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.22
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.21
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.18
PF04641	260	Rtf2: Rtf2 RING-finger	97.16
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.12
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.11
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.06
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.03
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.02
TIGR02270	410	conserved hypothetical protein. Members are found	96.98
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	96.97
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.88
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.84
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.83
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.83
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.82
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.77
KOG2979	262	consensus Protein involved in DNA repair [General	96.76
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.64
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.64
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	96.61
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.57
COG5369	743	Uncharacterized conserved protein [Function unknow	96.55
KOG3113	293	consensus Uncharacterized conserved protein [Funct	96.55
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	96.48
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.48
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.39
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.39
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	96.3
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.29
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.26
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.26
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.24
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.19
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.19
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.15
COG5369	743	Uncharacterized conserved protein [Function unknow	95.97
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.94
KOG4367	699	consensus Predicted Zn-finger protein [Function un	95.92
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.88
KOG3036	293	consensus Protein involved in cell differentiation	95.85
KOG3036	293	consensus Protein involved in cell differentiation	95.82
KOG1242	569	consensus Protein containing adaptin N-terminal re	95.75
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.72
KOG0212	675	consensus Uncharacterized conserved protein [Funct	95.69
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.6
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.54
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.46
COG5109	396	Uncharacterized conserved protein, contains RING Z	95.43
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.37
PF05004	309	IFRD: Interferon-related developmental regulator (	95.35
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.31
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.28
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.27
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	95.24
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	95.23
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	95.21
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.21
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.15
KOG2259	823	consensus Uncharacterized conserved protein [Funct	95.14
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	95.09
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.05
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.96
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.94
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	94.94
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	94.89
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	94.87
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.83
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.82
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.81
PF08045	257	CDC14: Cell division control protein 14, SIN compo	94.78
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	94.57
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.34
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.29
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	94.27
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.27
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.22
COG5096	757	Vesicle coat complex, various subunits [Intracellu	94.08
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.02
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	94.01
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	93.84
COG5096	757	Vesicle coat complex, various subunits [Intracellu	93.83
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	93.8
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	93.7
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.64
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	93.49
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	93.33
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	93.27
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.09
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	93.09
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	93.01
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	92.73
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	92.7
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.67
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.67
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	92.66
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	92.65
KOG1824	1233	consensus TATA-binding protein-interacting protein	92.41
KOG1001	674	consensus Helicase-like transcription factor HLTF/	92.36
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	92.19
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	91.82
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	91.79
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	91.62
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	91.62
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	91.61
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	91.55
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	91.33
COG5175	480	MOT2 Transcriptional repressor [Transcription]	91.11
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	90.84
KOG0825	1134	consensus PHD Zn-finger protein [General function	90.61
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	90.58
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	90.47
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	90.44
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	90.35
PF05004	309	IFRD: Interferon-related developmental regulator (	90.26
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	90.23
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	89.97
PF07814	361	WAPL: Wings apart-like protein regulation of heter	89.88
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	89.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	89.45
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	89.37
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	89.27
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	89.26
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.25
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	88.93
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	88.88
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	88.79
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	88.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	88.53
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	88.32
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	88.31
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	87.85
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	87.84
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	87.8
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	87.77
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	87.62
COG5219	1525	Uncharacterized conserved protein, contains RING Z	87.45
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	87.33
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	87.33
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	87.23
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	87.13
PLN02195	977	cellulose synthase A	86.88
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	86.82
KOG1824	1233	consensus TATA-binding protein-interacting protein	86.72
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	86.64
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	86.56
PF04641	260	Rtf2: Rtf2 RING-finger	86.51
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	86.33
PLN02189	1040	cellulose synthase	86.25
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	85.99
KOG0396	389	consensus Uncharacterized conserved protein [Funct	85.92
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	85.54
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	85.35
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	85.32
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	85.18
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	84.42
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	84.27
cd03561	133	VHS VHS domain family; The VHS domain is present i	84.22
PLN02638	1079	cellulose synthase A (UDP-forming), catalytic subu	83.43
PLN02436	1094	cellulose synthase A	83.41
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	83.36
KOG0301	745	consensus Phospholipase A2-activating protein (con	83.32
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	83.06
KOG0298	1394	consensus DEAD box-containing helicase-like transc	82.99
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	82.75
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	82.69
KOG4653	982	consensus Uncharacterized conserved protein [Funct	82.64
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	82.11
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	82.07
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	81.86
KOG2062	929	consensus 26S proteasome regulatory complex, subun	81.38
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	80.88
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	80.76
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	80.69

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=1.3e-27  Score=271.01  Aligned_cols=283  Identities=19%  Similarity=0.170  Sum_probs=246.7

Q ss_pred             hhcHHHHHHHhhcc--chHHHHHHHHHHHHHHHHcHHHHHHHHh-hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch
Q 041252          148 QGRASELLGTLKKV--KGQARVQALKELHQIAAAHASARKTMVD-EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE  224 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~  224 (450)
                      ...+..+++.|+++  +.+.|..|+..|+.+++.+++||..+.+ .|+||.|+.+|.+. +..++.+|+.+|.+|+.+++
T Consensus        12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg-~~~vk~nAaaaL~nLS~~e~   90 (2102)
T PLN03200         12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG-TLGAKVNAAAVLGVLCKEED   90 (2102)
T ss_pred             HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCHH
Confidence            45688899999976  6789999999999999999999999997 79999999999875 78899999999999999999


Q ss_pred             hhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC--C-ChhhHhhhhhHHHHHHHHHhcCC--CccchhHHHHH
Q 041252          225 SKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK--D-FRPEIVSSHRLLIGLMRLVKNKR--HPNGILPGLSL  299 (450)
Q Consensus       225 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~--~-~~~~~~~~~g~l~~Lv~lL~~~~--~~~~~~~al~a  299 (450)
                      +|..|+..|+|++|+.+|++++++.|++|+.+|++|+..+  + .+..++...|+++.|+.+++++.  +..++..+..+
T Consensus        91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A  170 (2102)
T PLN03200         91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA  170 (2102)
T ss_pred             HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764  3 34456778999999999999852  11234566799


Q ss_pred             HHHhccChHHHHH-HHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCC-hHHH
Q 041252          300 LRSICLLNEVRSL-VVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVS-EDCT  376 (450)
Q Consensus       300 L~~Ls~~~~~~~~-iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s-~~~~  376 (450)
                      |+|||.+.+++.. ++++|+||.|+.+|+++++..++.|+.+|.+++.+ ++++..+++ +|+||.||++|.+++ ..++
T Consensus       171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VR  249 (2102)
T PLN03200        171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVR  249 (2102)
T ss_pred             HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHH
Confidence            9999998888754 57999999999999999999999999999888866 779999998 899999999998754 5899


Q ss_pred             HHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCC--------CHHHHHHHHHHHHHHHhh
Q 041252          377 QYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGC--------NPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       377 e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~--------~~~~k~~A~~lL~~ls~~  433 (450)
                      ++|+++|++||..++ +.+..+++.|+++.|+.++.++.        +...++.|.+.|.++...
T Consensus       250 E~AA~AL~nLAs~s~-e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg  313 (2102)
T PLN03200        250 AEAAGALEALSSQSK-EAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG  313 (2102)
T ss_pred             HHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence            999999999999875 55678889999999999998642        234689999999997775

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.95  E-value=2.3e-26  Score=260.87  Aligned_cols=281  Identities=17%  Similarity=0.175  Sum_probs=243.6

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      +.++.|+..|++++.+.|..|+..|++++..++++|..++++|+||+|+++|.+. +..++++|+++|.|++.++++++.
T Consensus       446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~~~qir~  524 (2102)
T PLN03200        446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNLCCHSEDIRA  524 (2102)
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCcHHHHH
Confidence            5689999999999999999999999999998889999999999999999999875 789999999999999998766665


Q ss_pred             cc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh-------------------------------------hhH
Q 041252          229 LM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR-------------------------------------PEI  270 (450)
Q Consensus       229 i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~-------------------------------------~~~  270 (450)
                      ++ +.|++++|+++|++++.+.++.|+++|.+|+...+..                                     ...
T Consensus       525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g  604 (2102)
T PLN03200        525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG  604 (2102)
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence            55 7899999999999999999999999999996322110                                     011


Q ss_pred             hhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC--
Q 041252          271 VSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL--  347 (450)
Q Consensus       271 ~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--  347 (450)
                      ....|+++.|+.+|+++ ++..++.|+++|.+++ .+++++..++..|+|++|+.+|++++.+++..++++|.+|+..  
T Consensus       605 ~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~  683 (2102)
T PLN03200        605 SAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK  683 (2102)
T ss_pred             hhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence            12347899999999987 6889999999999998 5677889999999999999999999999999999999999954  


Q ss_pred             hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHH
Q 041252          348 PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELL  427 (450)
Q Consensus       348 ~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL  427 (450)
                      ++++..+++ .|+|++|+++|...+..+++.|+.+|.+++....  .+.++.+.|+++.|+.++++| ++..|+.|+++|
T Consensus       684 ~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e--~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~Aa~AL  759 (2102)
T PLN03200        684 ENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE--VAAEALAEDIILPLTRVLREG-TLEGKRNAARAL  759 (2102)
T ss_pred             HHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch--HHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHH
Confidence            556677777 8999999999999999999999999999999874  456677889999999999999 688888888877


Q ss_pred             HHHHhhcC
Q 041252          428 KLCSLNYT  435 (450)
Q Consensus       428 ~~ls~~~~  435 (450)
                      ..+..+.+
T Consensus       760 ~~L~~~~~  767 (2102)
T PLN03200        760 AQLLKHFP  767 (2102)
T ss_pred             HHHHhCCC
Confidence            66665533

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.4e-26  Score=215.25  Aligned_cols=282  Identities=20%  Similarity=0.265  Sum_probs=244.7

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM  230 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~  230 (450)
                      ++.|+..+.....++|..++++|.+++.. .+||..++..|++.++.++-++. +..++.++.++|.|+....+||+.++
T Consensus       128 l~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaksk-dirvqrnatgaLlnmThs~EnRr~LV  205 (550)
T KOG4224|consen  128 LDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSK-DIRVQRNATGALLNMTHSRENRRVLV  205 (550)
T ss_pred             hHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccc-hhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence            45566555555667899999999999977 56999999999999999965554 78899999999999999999999999


Q ss_pred             CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhh--HHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252          231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHR--LLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE  308 (450)
Q Consensus       231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g--~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~  308 (450)
                      ..|+++.||.++++++..+|..|+.+|.+++-+.-.++. ..+.+  .++.|+.+..++ ++.++..|.-||+||+++.+
T Consensus       206 ~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~-Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~  283 (550)
T KOG4224|consen  206 HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI-LAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTE  283 (550)
T ss_pred             ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH-HHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccch
Confidence            999999999999999999999999999999866544443 44444  999999999887 68899999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHhc
Q 041252          309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSIC  387 (450)
Q Consensus       309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~  387 (450)
                      .+..++++|.+|.++++|+++........+..++|++.+|-|-..|.+ +|.+.+||++|..+ +++.+-+|+.+||+|+
T Consensus       284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~d-agfl~pLVrlL~~~dnEeiqchAvstLrnLA  362 (550)
T KOG4224|consen  284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIAD-AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA  362 (550)
T ss_pred             hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceec-ccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence            999999999999999999998888888899999999999999999999 99999999999886 4679999999999999


Q ss_pred             ccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCcc
Q 041252          388 KIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTF  439 (450)
Q Consensus       388 ~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~  439 (450)
                      ..++ ..+..+.+.|++++|..++..+ .-..+..-...+..++.+..+...
T Consensus       363 asse-~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d~~k~~  412 (550)
T KOG4224|consen  363 ASSE-HNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALNDNDKEA  412 (550)
T ss_pred             hhhh-hhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhccccHHH
Confidence            8764 4456778999999999999988 456677777778887777544333

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.2e-26  Score=214.24  Aligned_cols=277  Identities=20%  Similarity=0.246  Sum_probs=244.2

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      |.+..+..+=++.+..+|..|...|.++.. +.+||+.++.+|++|.|+.++++. +.++++.+..++.|++.+..+|+.
T Consensus       167 GaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~-d~dvqyycttaisnIaVd~~~Rk~  244 (550)
T KOG4224|consen  167 GALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSG-DLDVQYYCTTAISNIAVDRRARKI  244 (550)
T ss_pred             cchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccC-ChhHHHHHHHHhhhhhhhHHHHHH
Confidence            566677764455566789999999999985 577999999999999999999886 889999999999999999999999


Q ss_pred             ccCCC--chHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252          229 LMQPA--KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL  306 (450)
Q Consensus       229 i~~~g--~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~  306 (450)
                      +++.+  .++.||++++++++.++-.|..+|++|+++.+...++ .+.|.+|.++++|+++. -....+...+++|++.+
T Consensus       245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ei-v~ag~lP~lv~Llqs~~-~plilasVaCIrnisih  322 (550)
T KOG4224|consen  245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREI-VEAGSLPLLVELLQSPM-GPLILASVACIRNISIH  322 (550)
T ss_pred             HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHH-HhcCCchHHHHHHhCcc-hhHHHHHHHHHhhcccc
Confidence            98866  9999999999999999999999999999888877765 56788999999998863 45677888899999999


Q ss_pred             hHHHHHHHhcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252          307 NEVRSLVVSIGAVPQLVELLPSLD-PDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW  384 (450)
Q Consensus       307 ~~~~~~iv~~G~v~~Lv~lL~~~~-~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~  384 (450)
                      +-|-..|+++|.+.+||++|+.++ ++++-.|..+|++|+. ...++..|.+ +|+||.+.+++..++-.+++.-.+++.
T Consensus       323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a  401 (550)
T KOG4224|consen  323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIA  401 (550)
T ss_pred             cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHH
Confidence            999999999999999999998875 5699999999999997 5889999999 899999999999999999999889998


Q ss_pred             HhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          385 SICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       385 ~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      .|+....  -+....+.|.++.|+.+..+. +.+++.+|+..|-+++.+
T Consensus       402 ~Lal~d~--~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  402 QLALNDN--DKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSD  447 (550)
T ss_pred             HHHhccc--cHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhh
Confidence            8888764  345667999999999999888 678888888888887766

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.7e-24  Score=216.03  Aligned_cols=281  Identities=22%  Similarity=0.258  Sum_probs=242.6

Q ss_pred             hhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hh
Q 041252          148 QGRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ES  225 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~  225 (450)
                      .|.++.+|..|+.. ++..|..|+++|.+++..+.+.-+.++++|++|.++.+|.+. +..+++.|+++|.|++.+. ..
T Consensus       108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~-~~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP-SADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC-cHHHHHHHHHHHhccccCChHH
Confidence            48899999999754 578999999999999999999999999999999999999886 7899999999999999876 66


Q ss_pred             hhhccCCCchHHHHHHhcCCCH-HHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          226 KTNLMQPAKVSLLVDMLNEGSV-ETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~~~-~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                      |..+.+.|++++|+.++...+. ....+++|+|.+|+.........-.-..+++.|..++.+. ++++...|++||.+|+
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-DEEVLTDACWALSYLT  265 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHh
Confidence            7788899999999999987754 7889999999999977644444445567899999999986 7899999999999999


Q ss_pred             -cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHH-HHhccCCChHHHHHHHhc-CChHHHHHHHH
Q 041252          305 -LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKL-ALKDCANTIPNTVRLLMR-VSEDCTQYALS  381 (450)
Q Consensus       305 -~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~-~i~~~~g~i~~Lv~lL~~-~s~~~~e~A~~  381 (450)
                       ..++....++++|+++.|+++|...+..++-.|+.++.|++...+.+. .+.+ .|++|.|..++.. .....++.|++
T Consensus       266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~-~~~L~~l~~ll~~s~~~~ikkEAcW  344 (514)
T KOG0166|consen  266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN-SGALPVLSNLLSSSPKESIKKEACW  344 (514)
T ss_pred             cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh-cChHHHHHHHhccCcchhHHHHHHH
Confidence             555666677799999999999999899999999999999987755554 5556 8999999999985 45668899999


Q ss_pred             HHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          382 ILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       382 ~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      +|.|++..+.+ ..+.++.+|.+|.|+.+++++ .-.+|+.|++++.++...
T Consensus       345 ~iSNItAG~~~-qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~  394 (514)
T KOG0166|consen  345 TISNITAGNQE-QIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSS  394 (514)
T ss_pred             HHHHhhcCCHH-HHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhccc
Confidence            99999998864 456788999999999999998 677888888888876654

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.8e-22  Score=202.93  Aligned_cols=283  Identities=18%  Similarity=0.191  Sum_probs=241.4

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT  227 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~  227 (450)
                      .++++-++.+|.+++.+++.+|+++|.+++.+++..|..+.+.|++++|+.++..........++.++|.||+.+...-.
T Consensus       151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P  230 (514)
T KOG0166|consen  151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP  230 (514)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence            47788899999999999999999999999999999999999999999999999875334688999999999998764333


Q ss_pred             hccC-CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252          228 NLMQ-PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL  306 (450)
Q Consensus       228 ~i~~-~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~  306 (450)
                      .+.. ...++.|..+|.+.+.++...|+++|.+|+........++...|.++.|+.+|... +..++..|++++.|+...
T Consensus       231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG  309 (514)
T KOG0166|consen  231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPALRAIGNIVTG  309 (514)
T ss_pred             cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-CcccccHHHhhccceeec
Confidence            3332 56799999999999999999999999999977777777788999999999999986 577889999999999865


Q ss_pred             hHH-HHHHHhcCCHHHHHHhcCC-CChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252          307 NEV-RSLVVSIGAVPQLVELLPS-LDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL  383 (450)
Q Consensus       307 ~~~-~~~iv~~G~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  383 (450)
                      .+. -..++..|++|.|..+|.. ....+++.|+++|.|++. +.+..+++.+ +|.+|.|+++|..+..+.+..|++++
T Consensus       310 ~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid-a~l~p~Li~~l~~~ef~~rKEAawaI  388 (514)
T KOG0166|consen  310 SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVID-ANLIPVLINLLQTAEFDIRKEAAWAI  388 (514)
T ss_pred             cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH-cccHHHHHHHHhccchHHHHHHHHHH
Confidence            555 4556689999999999984 455699999999999985 4778888888 89999999999999999999999999


Q ss_pred             HHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          384 WSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       384 ~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      .|++.....+....+++.|++++++.+|.-. +...-..+...|.++-..
T Consensus       389 sN~ts~g~~~qi~yLv~~giI~plcdlL~~~-D~~ii~v~Ld~l~nil~~  437 (514)
T KOG0166|consen  389 SNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP-DVKIILVALDGLENILKV  437 (514)
T ss_pred             HhhcccCCHHHHHHHHHcCCchhhhhcccCC-ChHHHHHHHHHHHHHHHH
Confidence            9999988766677889999999999999554 445556666666554433

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.88  E-value=2e-21  Score=182.40  Aligned_cols=281  Identities=20%  Similarity=0.219  Sum_probs=231.3

Q ss_pred             hhcHHHHHHHhhccch-HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hh
Q 041252          148 QGRASELLGTLKKVKG-QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ES  225 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~-~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~  225 (450)
                      .|.+++++..+.+... -.+..|+++|.++++.....-+.++++|++|.++.+|.+. +.++++.++++|.|++.+. .+
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS~~~  191 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDSEGC  191 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCchhH
Confidence            4778999999965443 3688999999999988776778889999999999999875 7899999999999999876 56


Q ss_pred             hhhccCCCchHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 041252          226 KTNLMQPAKVSLLVDMLNEG--SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI  303 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L  303 (450)
                      |..+.+.|++.+++.+|.+.  +.....++.|+|.||+.........-.-...+|.|.+++.+. ++++...|.||+..|
T Consensus       192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~-D~evlvDA~WAiSYl  270 (526)
T COG5064         192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR-DPEVLVDACWAISYL  270 (526)
T ss_pred             HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHh
Confidence            77888999999999999876  457889999999999876433322222234689999999886 799999999999999


Q ss_pred             ccCh-HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHH-HhccCCChHHHHHHHhcCChHHHHHHHH
Q 041252          304 CLLN-EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLA-LKDCANTIPNTVRLLMRVSEDCTQYALS  381 (450)
Q Consensus       304 s~~~-~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~-i~~~~g~i~~Lv~lL~~~s~~~~e~A~~  381 (450)
                      +..+ +-...+.+.|..+.|+++|...+..++..|+..+.|+....+.+.. +++ .|+++.+-.+|.+..+.++..|++
T Consensus       271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~-~G~L~a~~~lLs~~ke~irKEaCW  349 (526)
T COG5064         271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN-CGALKAFRSLLSSPKENIRKEACW  349 (526)
T ss_pred             ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehhee-cccHHHHHHHhcChhhhhhhhhhe
Confidence            9554 4555666899999999999999999999999999999977555554 555 899999999999888899999999


Q ss_pred             HHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          382 ILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       382 ~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      .+.|++..+.++ .+.++++..+|+|+.+|.+. .-.+|+.|.+++.+.+..
T Consensus       350 TiSNITAGnteq-iqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsg  399 (526)
T COG5064         350 TISNITAGNTEQ-IQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSG  399 (526)
T ss_pred             eecccccCCHHH-HHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhcc
Confidence            999999988744 56788999999999999887 456666666655554433

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.87  E-value=1.1e-22  Score=155.25  Aligned_cols=72  Identities=42%  Similarity=0.713  Sum_probs=63.3

Q ss_pred             CCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252           66 IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY  137 (450)
Q Consensus        66 ~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~  137 (450)
                      +|++|+||||+++|+|||++++||||||++|++|+..++.+||.|+++++..+++||..|++.|++|+.+|.
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence            699999999999999999999999999999999999878999999999999999999999999999999874

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.85  E-value=2.3e-20  Score=175.43  Aligned_cols=278  Identities=16%  Similarity=0.166  Sum_probs=230.7

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC-ChhhHHHHHHHHHhcCCCchhh
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT-SHAVGSEAVGVLVNLTLDSESK  226 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~~~~~k  226 (450)
                      .+.++.++++|.++..+++.+++++|-+++.+++..|..+.+.|++++++.+|.++. +..+.+++.++|.||+......
T Consensus       156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~  235 (526)
T COG5064         156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP  235 (526)
T ss_pred             CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence            478999999999999999999999999999999999999999999999999987653 2478899999999999754222


Q ss_pred             hhcc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252          227 TNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL  305 (450)
Q Consensus       227 ~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~  305 (450)
                      ..-- -..+++.|.+++.+.++++...|+|+|..|+.....+..++...|..+.|+++|.++ +..++..+++...|+..
T Consensus       236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPalR~vGNIVT  314 (526)
T COG5064         236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVT  314 (526)
T ss_pred             CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHHHhhcCeee
Confidence            1111 145689999999999999999999999999887767777778889999999999986 67788999999999985


Q ss_pred             ChHHH-HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc-CChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252          306 LNEVR-SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS-SLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL  383 (450)
Q Consensus       306 ~~~~~-~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  383 (450)
                      ..+.+ ..++..|+++++..+|++....++..|++++.|+. .+.+.-+++.+ ++.||+|+++|....-+.+..|++++
T Consensus       315 G~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid-~nliPpLi~lls~ae~k~kKEACWAi  393 (526)
T COG5064         315 GSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID-ANLIPPLIHLLSSAEYKIKKEACWAI  393 (526)
T ss_pred             cCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence            54444 55668999999999999988899999999999997 45777788888 89999999999998899999999999


Q ss_pred             HHhcccCch--hHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041252          384 WSICKIAPE--ECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK  428 (450)
Q Consensus       384 ~~L~~~~~~--~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~  428 (450)
                      .|.+...-.  +..+..+..|.+.+|..+|.-. ...+-+.+...+.
T Consensus       394 sNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~-dNkiiev~LD~~e  439 (526)
T COG5064         394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV-DNKIIEVALDAIE  439 (526)
T ss_pred             HhhhccccCCchHHHHHHHccchhHHHHHHhcc-CccchhhhHHHHH
Confidence            998765521  3456778999999999999654 2223344444333

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.80  E-value=1.4e-18  Score=186.43  Aligned_cols=263  Identities=21%  Similarity=0.201  Sum_probs=215.8

Q ss_pred             HHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCC-------C----ChhhHHHHHHHHHhcCCCc-hhhhhccC-CCc
Q 041252          168 QALKELHQIAAAHASARKTMVDEGGVALISSLLGPF-------T----SHAVGSEAVGVLVNLTLDS-ESKTNLMQ-PAK  234 (450)
Q Consensus       168 ~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~-------~----~~~v~~~Al~~L~~Ls~~~-~~k~~i~~-~g~  234 (450)
                      .|+..|.++.. ++++|+.+-+.|++.++-.||.-.       +    ...++..|..+|-||...+ .||..+-. .|+
T Consensus       317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf  395 (2195)
T KOG2122|consen  317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF  395 (2195)
T ss_pred             HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence            57777777764 578999999999999998877421       1    2357889999999999866 67887764 899


Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-ChHHHHH
Q 041252          235 VSLLVDMLNEGSVETKINCTRLIEKLMEE-KDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LNEVRSL  312 (450)
Q Consensus       235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~~~~~~  312 (450)
                      +..+|..|.+...++.+--+.+|+||+-. +...+.++.+.|-+..|+...-........++.+.|||||+. +.+||..
T Consensus       396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~  475 (2195)
T KOG2122|consen  396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE  475 (2195)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence            99999999999999999999999999843 334567788899889988876543346789999999999995 5789999


Q ss_pred             HHh-cCCHHHHHHhcCC----CChhHHHHHHHHHHHhcCC----hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252          313 VVS-IGAVPQLVELLPS----LDPDCLQLALCILDALSSL----PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL  383 (450)
Q Consensus       313 iv~-~G~v~~Lv~lL~~----~~~~~~~~al~~L~~L~~~----~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  383 (450)
                      |.. .|++.+||.+|.-    ....+.|.|-++|+|.++.    +..|+.+.+ .++|..|++.|.++|-.+..+++++|
T Consensus       476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~-~NCLq~LLQ~LKS~SLTiVSNaCGTL  554 (2195)
T KOG2122|consen  476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR-HNCLQTLLQHLKSHSLTIVSNACGTL  554 (2195)
T ss_pred             hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH-hhHHHHHHHHhhhcceEEeecchhhh
Confidence            999 6999999999943    3468999999999998754    667777887 69999999999999999999999999


Q ss_pred             HHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          384 WSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       384 ~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      |||...+++ .++...+.|+++.|..++++.....+.-.|+.|..+|...
T Consensus       555 WNLSAR~p~-DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  555 WNLSARSPE-DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhcCCHH-HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            999999984 4667779999999999999984455555555555555544

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.77  E-value=5e-17  Score=168.57  Aligned_cols=281  Identities=21%  Similarity=0.215  Sum_probs=226.7

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC---chh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD---SES  225 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~---~~~  225 (450)
                      ..+++.+.+|.+.....|..|...|+.+|..+...|..+.+.|+|+.|+.+|.+. ..+++..|+++|.||...   ++|
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCccc
Confidence            4578899999999999999999999999999999999999999999999999986 789999999999999874   368


Q ss_pred             hhhccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHh---------------------------------
Q 041252          226 KTNLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIV---------------------------------  271 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~---------------------------------  271 (450)
                      |-.|.+.++|+.++++|.. +|.++++..+.+|+||++.+..+..++                                 
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            8999999999999999996 699999999999999977642111111                                 


Q ss_pred             ----------------------hhhhHHHHHHHHHhc-----CCC-----------------------------------
Q 041252          272 ----------------------SSHRLLIGLMRLVKN-----KRH-----------------------------------  289 (450)
Q Consensus       272 ----------------------~~~g~l~~Lv~lL~~-----~~~-----------------------------------  289 (450)
                                            .-.|+|..|+..++.     ..+                                   
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence                                  112566666664431     001                                   


Q ss_pred             -------------------------------------------------------------ccchhHHHHHHHHhccC--
Q 041252          290 -------------------------------------------------------------PNGILPGLSLLRSICLL--  306 (450)
Q Consensus       290 -------------------------------------------------------------~~~~~~al~aL~~Ls~~--  306 (450)
                                                                                   +.+.+++++||.||+..  
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                                                                         12455666677777621  


Q ss_pred             ---hHHHHHH-HhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC------ChHHH
Q 041252          307 ---NEVRSLV-VSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV------SEDCT  376 (450)
Q Consensus       307 ---~~~~~~i-v~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~------s~~~~  376 (450)
                         ...+..+ ....+.++|+++|+..+..+...+..+|+||+.+..+|..|..  ++|+.||+.|...      ++...
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv  629 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTV  629 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHH
Confidence               1234444 4566889999999999999999999999999999999999985  8999999999765      25788


Q ss_pred             HHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          377 QYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       377 e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      ..++.+|+++...+. ..++.+.+.+++++|+.+..+..++..-+.|..+|..+-.+
T Consensus       630 ~~vc~tl~niv~~~~-~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y  685 (717)
T KOG1048|consen  630 RAVCHTLNNIVRKNV-LNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY  685 (717)
T ss_pred             HHHHHhHHHHHHHhH-HHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            889999999998776 44678889999999999998877788888888888776443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.77  E-value=7.6e-17  Score=170.71  Aligned_cols=257  Identities=18%  Similarity=0.211  Sum_probs=216.0

Q ss_pred             HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhc
Q 041252          164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLN  243 (450)
Q Consensus       164 ~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~  243 (450)
                      .....++..|.+++ ++..++..+++.|+|+.|+++|.+. +.++.-.++++|..||...+||..|.+.|+|+.|++++.
T Consensus       264 qLlrv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~  341 (708)
T PF05804_consen  264 QLLRVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP  341 (708)
T ss_pred             HHHHHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence            34455777788888 4567899999999999999999876 788999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHH
Q 041252          244 EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLV  323 (450)
Q Consensus       244 ~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv  323 (450)
                      +++.+.+..+..+|.||+.+.+.+. .+.+.|++|.|+.+|.++   +.+..++.+|++||.++++|..+...+++|.++
T Consensus       342 s~~~~l~~~aLrlL~NLSfd~~~R~-~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~  417 (708)
T PF05804_consen  342 SENEDLVNVALRLLFNLSFDPELRS-QMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAYTDCIPQLM  417 (708)
T ss_pred             CCCHHHHHHHHHHHHHhCcCHHHHH-HHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhhcchHHHHH
Confidence            9999999999999999987776654 577899999999999764   356779999999999999999999999999999


Q ss_pred             HhcCC-CChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcC
Q 041252          324 ELLPS-LDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAG  402 (450)
Q Consensus       324 ~lL~~-~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G  402 (450)
                      ++|-+ +++.+...+++++.||+.++.+.+.+.+ .||++.|++...+.....   .+.++.|++.+.+. .+.. . .+
T Consensus       418 ~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~-g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~-~k~~-f-~~  490 (708)
T PF05804_consen  418 QMLLENSEEEVQLELIALLINLALNKRNAQLMCE-GNGLQSLMKRALKTRDPL---LLKLIRNISQHDGP-LKEL-F-VD  490 (708)
T ss_pred             HHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh-cCcHHHHHHHHHhcccHH---HHHHHHHHHhcCch-HHHH-H-HH
Confidence            98744 4666777889999999999999999998 799999999987655432   45789999998842 2222 2 35


Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          403 LAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       403 ~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      .+..|+.++.++.++...-.+..+|.+++..
T Consensus       491 ~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~  521 (708)
T PF05804_consen  491 FIGDLAKIVSSGDSEEFVVECLGILANLTIP  521 (708)
T ss_pred             HHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence            7888888888876777888888888887643

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.76  E-value=1.1e-16  Score=169.37  Aligned_cols=285  Identities=17%  Similarity=0.192  Sum_probs=228.1

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      +.+..|++.|.+.+.+....++..|++++-. .+||..+.+.|+|+.|++++.+. +.+.+..++.+|.|||.+++.|..
T Consensus       290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~NLSfd~~~R~~  367 (708)
T PF05804_consen  290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSE-NEDLVNVALRLLFNLSFDPELRSQ  367 (708)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhCcCHHHHHH
Confidence            4577899999998889999999999999854 56999999999999999999875 678999999999999999999999


Q ss_pred             ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252          229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE  308 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~  308 (450)
                      |++.|.+|.|+.+|..+  ..+..+..+|++||.+++.+ ..+...++++.|++++.....+.+...++.++.|||.++.
T Consensus       368 mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r-~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r  444 (708)
T PF05804_consen  368 MVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEAR-SMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR  444 (708)
T ss_pred             HHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhH-HHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence            99999999999999754  45567899999998776554 4566667899999988776556677788899999999999


Q ss_pred             HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCh-hhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHh
Q 041252          309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLP-EGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSI  386 (450)
Q Consensus       309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L  386 (450)
                      |...+++.|+++.|++..-....   ...++.++|++.++ ..+..+.+   .|..|+.++... ++...-.++++|.|+
T Consensus       445 naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~~---~i~~L~~~v~~~~~ee~~vE~LGiLaNL  518 (708)
T PF05804_consen  445 NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFVD---FIGDLAKIVSSGDSEEFVVECLGILANL  518 (708)
T ss_pred             HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHHH---HHHHHHHHhhcCCcHHHHHHHHHHHHhc
Confidence            99999999999999998744332   22457999999997 56666654   688899988775 567888899999999


Q ss_pred             cccCchhHHHHHHhcChHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhhcCCCcccccccc
Q 041252          387 CKIAPEECSSAAVDAGLAAKLFLVIQSGCN-PVLKQRSAELLKLCSLNYTDTTFISKCKL  445 (450)
Q Consensus       387 ~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~-~~~k~~A~~lL~~ls~~~~~~~~i~~~~~  445 (450)
                      ...+. ...+.+.+.+.+|.|..+|..+.+ +.+.-.+..++..++........+.++.+
T Consensus       519 ~~~~l-d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgl  577 (708)
T PF05804_consen  519 TIPDL-DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGL  577 (708)
T ss_pred             ccCCc-CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCCh
Confidence            87653 344455568999999999977633 45666666677666655444444544444

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=3.5e-16  Score=147.29  Aligned_cols=270  Identities=15%  Similarity=0.255  Sum_probs=219.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCC-CChhhHHHHHHHHHh-cCCCchhhhhccCCCchHH
Q 041252          160 KVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPF-TSHAVGSEAVGVLVN-LTLDSESKTNLMQPAKVSL  237 (450)
Q Consensus       160 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~-~~~~v~~~Al~~L~~-Ls~~~~~k~~i~~~g~i~~  237 (450)
                      +++...-.+++.+|-.+....++    +.++-+...++.+|... .+.++....+..+.. ...++.||+.+++.+.++.
T Consensus       118 ~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~L  193 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILEL  193 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Confidence            34555777888888888765443    55666788888988643 245666667777776 4458899999999999999


Q ss_pred             HHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhH---------hhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252          238 LVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEI---------VSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN  307 (450)
Q Consensus       238 Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~---------~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~  307 (450)
                      +...|... ...+...+.++++.|..+++.+..+         +...|++..|++.++..-+|+.......+|..|+..+
T Consensus       194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~  273 (461)
T KOG4199|consen  194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD  273 (461)
T ss_pred             HHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence            99888754 4458888899999998777766443         3445778999999998778899999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHhcCCCC----hhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC--ChHHHHHHHH
Q 041252          308 EVRSLVVSIGAVPQLVELLPSLD----PDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV--SEDCTQYALS  381 (450)
Q Consensus       308 ~~~~~iv~~G~v~~Lv~lL~~~~----~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~--s~~~~e~A~~  381 (450)
                      +.++.+++.|++..|++++.+++    ......+++.|+.|+.++.++..|++ .||.+.++.++.++  ++.+.+.++.
T Consensus       274 E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~p~Vi~~~~a  352 (461)
T KOG4199|consen  274 EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKIITLALRHSDDPLVIQEVMA  352 (461)
T ss_pred             HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHHHHHHHcCCChHHHHHHHH
Confidence            99999999999999999997743    34668899999999999999999999 89999999999876  5789999999


Q ss_pred             HHHHhcccCchhHHHHHHhcChHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhhcC
Q 041252          382 ILWSICKIAPEECSSAAVDAGLAAKLFLVIQS-GCNPVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       382 ~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s-~~~~~~k~~A~~lL~~ls~~~~  435 (450)
                      ++..||..+|+. ...++++|+....++-|.. +-...++++|.+++|++..+++
T Consensus       353 ~i~~l~LR~pdh-sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~  406 (461)
T KOG4199|consen  353 IISILCLRSPDH-SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA  406 (461)
T ss_pred             HHHHHHhcCcch-HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999966 4567898888888877754 4445688999999999877743

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=9e-16  Score=144.51  Aligned_cols=276  Identities=17%  Similarity=0.217  Sum_probs=224.5

Q ss_pred             HHHHHHhhc--cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh---
Q 041252          152 SELLGTLKK--VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK---  226 (450)
Q Consensus       152 ~~Lv~~L~~--~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k---  226 (450)
                      .-++++|..  .++++-...+..++.-|-.|+.||..+++.++.+.+...|.....+.+.+++.++++.|..+++-|   
T Consensus       148 ~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~f  227 (461)
T KOG4199|consen  148 AVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVF  227 (461)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeec
Confidence            345666643  455677778999999999999999999999999999987766544468888999999988777654   


Q ss_pred             -------hhccCCCchHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCcc---chhH
Q 041252          227 -------TNLMQPAKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPN---GILP  295 (450)
Q Consensus       227 -------~~i~~~g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~---~~~~  295 (450)
                             +.|++.|++..|++.|.-+ ++.+...+..+|..|+-.++.++.+ .+.|++..|++++.+.+...   ..+.
T Consensus       228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I-~e~GGl~tl~~~i~d~n~~~~r~l~k~  306 (461)
T KOG4199|consen  228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSI-AESGGLDTLLRCIDDSNEQGNRTLAKT  306 (461)
T ss_pred             chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHH-HHccCHHHHHHHHhhhchhhHHHHHHH
Confidence                   4567788999999999866 7888899999999999888877764 56788999999998843333   3468


Q ss_pred             HHHHHHHhccChHHHHHHHhcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCC
Q 041252          296 GLSLLRSICLLNEVRSLVVSIGAVPQLVELL--PSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVS  372 (450)
Q Consensus       296 al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL--~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s  372 (450)
                      ++..|+.|++++++|..||+.|+.+.++.++  .+.++.+.+.++.++..||- .|++-..+++ +|+-...|+.|..+.
T Consensus       307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avqAmkahP  385 (461)
T KOG4199|consen  307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQAMKAHP  385 (461)
T ss_pred             HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHHHHHhCc
Confidence            8999999999999999999999999999998  45689999999999999994 5888888888 899999999999886


Q ss_pred             --hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252          373 --EDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL  432 (450)
Q Consensus       373 --~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~  432 (450)
                        ..++++|+..+.|+..++.++ +...+..|+ ..|+..-.+. ++..+..|...||-|.-
T Consensus       386 ~~a~vQrnac~~IRNiv~rs~~~-~~~~l~~Gi-E~Li~~A~~~-h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  386 VAAQVQRNACNMIRNIVVRSAEN-RTILLANGI-EKLIRTAKAN-HETCEAAAKAALRDLGC  444 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhc-cchHHhccH-HHHHHHHHhc-CccHHHHHHHHHHhcCc
Confidence              478999999999999988644 345566665 7777777665 56667777778886543

>smart00504 Ubox Modified RING finger domain

Probab=99.72  E-value=6.8e-18  Score=125.46  Aligned_cols=63  Identities=49%  Similarity=0.766  Sum_probs=60.2

Q ss_pred             eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHH
Q 041252           69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTW  132 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w  132 (450)
                      +|.||||+++|+|||+++|||+|||+||.+|+.. +.+||.|+++++.+++++|..+++.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            4789999999999999999999999999999987 67899999999999999999999999998

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.54  E-value=1e-13  Score=144.21  Aligned_cols=246  Identities=15%  Similarity=0.150  Sum_probs=193.3

Q ss_pred             hHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--Chhh
Q 041252          193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD--FRPE  269 (450)
Q Consensus       193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~--~~~~  269 (450)
                      +|-.+.+|.+. +..++.+|..-|.+++..+ +.|..+.+-|+|+.||.+|.+.+.+++.+|+++|+||...++  .++.
T Consensus       235 lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  235 LPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             cHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence            45667788765 7889999999999999855 677888889999999999999999999999999999975433  4777


Q ss_pred             HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcC---C----C-------ChhHHH
Q 041252          270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLP---S----L-------DPDCLQ  335 (450)
Q Consensus       270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~---~----~-------~~~~~~  335 (450)
                      .+...++++.|+++|+...+.++++...++||||++++..|..|+.. ++..|-+-+-   +    +       +..+..
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~  392 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR  392 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeee
Confidence            78889999999999998667889999999999999998888777764 4555555441   1    1       256788


Q ss_pred             HHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhc------CChH----------------------------------
Q 041252          336 LALCILDALSS-LPEGKLALKDCANTIPNTVRLLMR------VSED----------------------------------  374 (450)
Q Consensus       336 ~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~------~s~~----------------------------------  374 (450)
                      ++.++|+|+++ ..+.|+++.++.|.|..|+..+.+      .+.+                                  
T Consensus       393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~  472 (717)
T KOG1048|consen  393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL  472 (717)
T ss_pred             hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence            99999999987 589999999999999999988872      1122                                  


Q ss_pred             --------------------------------------------------------------HHHHHHHHHHHhcccCch
Q 041252          375 --------------------------------------------------------------CTQYALSILWSICKIAPE  392 (450)
Q Consensus       375 --------------------------------------------------------------~~e~A~~~L~~L~~~~~~  392 (450)
                                                                                    +.|.++++|-||+.....
T Consensus       473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~  552 (717)
T KOG1048|consen  473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT  552 (717)
T ss_pred             ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence                                                                          345555666666544321


Q ss_pred             ---hHHHHH-HhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCcccc
Q 041252          393 ---ECSSAA-VDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFIS  441 (450)
Q Consensus       393 ---~~~~~~-~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~i~  441 (450)
                         ..+..+ .+.-+.+.|+.+++++ ++.+.+.++.+|++++.+.++...|.
T Consensus       553 ~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~rnk~lig  604 (717)
T KOG1048|consen  553 WSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIRNKELIG  604 (717)
T ss_pred             chhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCchhhhhhh
Confidence               122233 3455679999999999 67888999999999999988877776

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.52  E-value=7.5e-13  Score=125.19  Aligned_cols=197  Identities=16%  Similarity=0.180  Sum_probs=166.9

Q ss_pred             HhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh
Q 041252          188 VDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR  267 (450)
Q Consensus       188 ~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~  267 (450)
                      .+.+-++.|+.+|+...+..+++.|+.++.+.+..+.++..|.+.|+++.+..+|..+++.+|+.|..+|.+++...+..
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            45667899999999777889999999999999999999999999999999999999999999999999999997665544


Q ss_pred             hhHhhhhhHHHHHHHHHhc-CCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252          268 PEIVSSHRLLIGLMRLVKN-KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS  346 (450)
Q Consensus       268 ~~~~~~~g~l~~Lv~lL~~-~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~  346 (450)
                      .. +.  ..++.+++...+ ..+..++.+++++|.||+..++.+..+.  +.++.++++|.+++..++..++++|.||+.
T Consensus        89 ~~-Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   89 EQ-IK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             HH-HH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            33 32  245666665444 3467788999999999998887877665  479999999999999999999999999999


Q ss_pred             ChhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccC
Q 041252          347 LPEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSICKIA  390 (450)
Q Consensus       347 ~~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~  390 (450)
                      ++.....+.. +.+...++.++.+. +......++..+.||..+-
T Consensus       164 np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  164 NPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINENI  207 (254)
T ss_pred             CHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence            9998888887 78999999998775 5677888888888886544

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.44  E-value=5.6e-12  Score=119.30  Aligned_cols=201  Identities=15%  Similarity=0.167  Sum_probs=172.3

Q ss_pred             hccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252          228 NLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL  306 (450)
Q Consensus       228 ~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~  306 (450)
                      .+.+++.++.|+.+|+. .++.+++.|..++.+.+.. +..+.++...|+++.+..+|.++ ++.++..|+.+|.|++.+
T Consensus         7 ~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~   84 (254)
T PF04826_consen    7 NILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVN   84 (254)
T ss_pred             CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCC
Confidence            34678889999999995 5899999999999998654 46778889999999999999987 788999999999999999


Q ss_pred             hHHHHHHHhcCCHHHHHHhcCCC--ChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252          307 NEVRSLVVSIGAVPQLVELLPSL--DPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW  384 (450)
Q Consensus       307 ~~~~~~iv~~G~v~~Lv~lL~~~--~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~  384 (450)
                      .+|+..+-.  .++.+.+.+.+.  +.+++..++.+|.+|+..++.+..+..   .++.++++|..++..++.+++.+|.
T Consensus        85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~  159 (254)
T PF04826_consen   85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLV  159 (254)
T ss_pred             hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHH
Confidence            999887754  577777765443  678999999999999988888888754   7999999999999999999999999


Q ss_pred             HhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252          385 SICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT  437 (450)
Q Consensus       385 ~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~  437 (450)
                      +|+.+.  ...+.++.+++...++.+++...+...-..+..+..+++.+++..
T Consensus       160 nLS~np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~  210 (254)
T PF04826_consen  160 NLSENP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE  210 (254)
T ss_pred             HhccCH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence            998865  456788888899999999988766777888999999998887654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.38  E-value=2.6e-10  Score=119.20  Aligned_cols=283  Identities=20%  Similarity=0.203  Sum_probs=224.6

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      ..+.+...|.++++.+|..+++.|.+++.++......+.+.+.++.++.+|... +..+...|+.+|.+++.++.....+
T Consensus        78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l  156 (503)
T PF10508_consen   78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQL  156 (503)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHH
Confidence            455677788898999999999999999887776677788899999999999875 7899999999999999988888888


Q ss_pred             cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHH
Q 041252          230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEV  309 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~  309 (450)
                      ..++.+..|..++...+..+|..+..++.+++..++.....+...|+++.++..|+++ +.-++.+++..|..|+..+.+
T Consensus       157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~~~~g  235 (503)
T PF10508_consen  157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELAETPHG  235 (503)
T ss_pred             hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcChhH
Confidence            8988899999999887889999999999999877777777778889999999999884 677888999999999999889


Q ss_pred             HHHHHhcCCHHHHHHhcCC-----------------------------------------------CChhHHHHHHHHHH
Q 041252          310 RSLVVSIGAVPQLVELLPS-----------------------------------------------LDPDCLQLALCILD  342 (450)
Q Consensus       310 ~~~iv~~G~v~~Lv~lL~~-----------------------------------------------~~~~~~~~al~~L~  342 (450)
                      ...+.+.|+++.|+.++.+                                               .+...+..|+.+|.
T Consensus       236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg  315 (503)
T PF10508_consen  236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLG  315 (503)
T ss_pred             HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence            9999999988887777732                                               22334688899999


Q ss_pred             HhcCChhhHHHH-hccCCChHHHHHHHhc----CChHHHHHHHHHHHHhcccCch----hH---HHHH---HhcChHH-H
Q 041252          343 ALSSLPEGKLAL-KDCANTIPNTVRLLMR----VSEDCTQYALSILWSICKIAPE----EC---SSAA---VDAGLAA-K  406 (450)
Q Consensus       343 ~L~~~~e~r~~i-~~~~g~i~~Lv~lL~~----~s~~~~e~A~~~L~~L~~~~~~----~~---~~~~---~~~G~i~-~  406 (450)
                      .++++.+|+..+ ....+.++.+++....    ++...+-.++.+|.++-...++    +.   .+..   ...+... .
T Consensus       316 ~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~  395 (503)
T PF10508_consen  316 QIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNL  395 (503)
T ss_pred             HHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHH
Confidence            999999999999 5545566666666544    4567888889998888433322    11   1111   1223333 4


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhh-cC
Q 041252          407 LFLVIQSGCNPVLKQRSAELLKLCSLN-YT  435 (450)
Q Consensus       407 L~~ll~s~~~~~~k~~A~~lL~~ls~~-~~  435 (450)
                      ++.+++.+ =+++|-+|..+|+.+..+ |.
T Consensus       396 l~~~~~qP-F~elr~a~~~~l~~l~~~~Wg  424 (503)
T PF10508_consen  396 LMSLLKQP-FPELRCAAYRLLQALAAQPWG  424 (503)
T ss_pred             HHHHhcCC-chHHHHHHHHHHHHHhcCHHH
Confidence            55666554 589999999999988776 54

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.30  E-value=2.2e-11  Score=132.09  Aligned_cols=226  Identities=18%  Similarity=0.138  Sum_probs=188.9

Q ss_pred             HHHHHHHHHHHHHHHHcHHHHHHHHhh-CChHHHHhhhCCCCChhhHHHHHHHHHhcCCC--chhhhhccCCCchHHHHH
Q 041252          164 QARVQALKELHQIAAAHASARKTMVDE-GGVALISSLLGPFTSHAVGSEAVGVLVNLTLD--SESKTNLMQPAKVSLLVD  240 (450)
Q Consensus       164 ~~~~~Al~~L~~l~~~~~~~r~~i~~~-G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~  240 (450)
                      ..|..|+.+|.+|...+..||..+... |.+..+|.-|.+. .+++..--..+|+||+..  ...|+.+-+.|.+..|+.
T Consensus       366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~  444 (2195)
T KOG2122|consen  366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA  444 (2195)
T ss_pred             HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence            378899999999999999999988865 7799999998775 678888899999999973  355677778899999888


Q ss_pred             Hh-cCCCHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHhcC---CCccchhHHHHHHHHhc----cChHHHH
Q 041252          241 ML-NEGSVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVKNK---RHPNGILPGLSLLRSIC----LLNEVRS  311 (450)
Q Consensus       241 lL-~~~~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~~~---~~~~~~~~al~aL~~Ls----~~~~~~~  311 (450)
                      .- .............+||||+... +.+++|-.-.|++..||.+|.-+   +.-.+++.+-++|+|.+    .++..|.
T Consensus       445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ  524 (2195)
T KOG2122|consen  445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ  524 (2195)
T ss_pred             HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence            64 4445566777889999997543 44455556789999999999753   23456788999999987    4567888


Q ss_pred             HHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc-CChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252          312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALS-SLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA  390 (450)
Q Consensus       312 ~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  390 (450)
                      .+.+..++..|+..|.+.+..++-+++++|+||+ .+++.++.+.+ .|+++-|-.++.+......+-++.+|.||-.+.
T Consensus       525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            8889999999999999999999999999999998 56999999999 799999999999888888888999999997766


Q ss_pred             c
Q 041252          391 P  391 (450)
Q Consensus       391 ~  391 (450)
                      +
T Consensus       604 P  604 (2195)
T KOG2122|consen  604 P  604 (2195)
T ss_pred             c
Confidence            4

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.29  E-value=2e-12  Score=87.00  Aligned_cols=39  Identities=33%  Similarity=0.778  Sum_probs=31.2

Q ss_pred             CcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCC---CCCCCc
Q 041252           72 CPISLEPMQDPVTLCTGQTYERSNILKWFSLGR---YTCPTT  110 (450)
Q Consensus        72 Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~---~~cP~~  110 (450)
                      ||||+++|+|||+++|||+||++||.+|++...   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999998632   469986

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.24  E-value=1.2e-10  Score=97.26  Aligned_cols=116  Identities=28%  Similarity=0.327  Sum_probs=104.2

Q ss_pred             hhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCh-
Q 041252          271 VSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLP-  348 (450)
Q Consensus       271 ~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-  348 (450)
                      +.+.|+++.|++++.++ ++.++..++.+|.+++.. ++.+..+++.|+++.++.+|.+.++.++..|+++|.+|+..+ 
T Consensus         3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            34678899999999986 588999999999999976 889999999999999999999999999999999999999875 


Q ss_pred             hhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252          349 EGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK  388 (450)
Q Consensus       349 e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  388 (450)
                      ..+..+.+ .|+++.+++++...+..+++.|+.+|++||.
T Consensus        82 ~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            55666676 7999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.23  E-value=2.9e-10  Score=94.88  Aligned_cols=117  Identities=26%  Similarity=0.308  Sum_probs=105.7

Q ss_pred             HHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252          312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA  390 (450)
Q Consensus       312 ~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  390 (450)
                      .+++.|+++.|+++|.+.+..+++.++.+|.+++.. ++.+..+.+ .|+++.++++|...++.+++.|+.+|++++...
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            467899999999999999999999999999999987 888999888 799999999999999999999999999999877


Q ss_pred             chhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252          391 PEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       391 ~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls  431 (450)
                      + .....+.+.|+++.|+.+++.+ +..+++.|..+|..+.
T Consensus        81 ~-~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~  119 (120)
T cd00020          81 E-DNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLA  119 (120)
T ss_pred             H-HHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence            5 4456678899999999999887 7889999999998764

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.22  E-value=9.6e-10  Score=107.27  Aligned_cols=267  Identities=17%  Similarity=0.117  Sum_probs=185.0

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCCh------hhHHHHHHHHHhcC--
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSH------AVGSEAVGVLVNLT--  220 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~------~v~~~Al~~L~~Ls--  220 (450)
                      +.++.|.+..++.+.++..+..++|.++|.++.++|..+.+.||-..++++|++..+.      +...-+.+.|.|-.  
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~  166 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD  166 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence            4566677777777788999999999999999999999999999988888888753211      12222333333321  


Q ss_pred             --------------------------------------------------------------------------------
Q 041252          221 --------------------------------------------------------------------------------  220 (450)
Q Consensus       221 --------------------------------------------------------------------------------  220 (450)
                                                                                                      
T Consensus       167 ~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe  246 (604)
T KOG4500|consen  167 SRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE  246 (604)
T ss_pred             cHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence                                                                                            


Q ss_pred             ------CCchhhhhccCCCchHHHHHHhcC-CCH-------HHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc
Q 041252          221 ------LDSESKTNLMQPAKVSLLVDMLNE-GSV-------ETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN  286 (450)
Q Consensus       221 ------~~~~~k~~i~~~g~i~~Lv~lL~~-~~~-------~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~  286 (450)
                            .++..|-.+++.|.+..++.++.. .+.       ..-..++....-|..++++.........++..+++.+.+
T Consensus       247 ila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S  326 (604)
T KOG4500|consen  247 ILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRS  326 (604)
T ss_pred             HHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcC
Confidence                  222233344445555555555543 111       111122222222334444544444444478888888888


Q ss_pred             CCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcC-----CCChhHHHHHHHHHHHhcCChhhHHHHhccCCCh
Q 041252          287 KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLP-----SLDPDCLQLALCILDALSSLPEGKLALKDCANTI  361 (450)
Q Consensus       287 ~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~-----~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i  361 (450)
                      . +.+.+-.+.-+|.|++..++++..+++.|.+..|+++|.     +++.+.+..++++|+||..--.||..+.. +|..
T Consensus       327 ~-d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~-aGvt  404 (604)
T KOG4500|consen  327 D-DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAP-AGVT  404 (604)
T ss_pred             C-chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccc-cchH
Confidence            6 577888899999999999999999999999999999993     35789999999999999988889999998 9999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCH
Q 041252          362 PNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNP  417 (450)
Q Consensus       362 ~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~  417 (450)
                      +.++..+...++.++..-.+.|.-+-...+.-..+..-..-.+..|++.-.+....
T Consensus       405 eaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~a  460 (604)
T KOG4500|consen  405 EAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFA  460 (604)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccc
Confidence            99999999999999888888877664433211222222345677777777665333

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.16  E-value=3.3e-11  Score=119.51  Aligned_cols=71  Identities=15%  Similarity=0.252  Sum_probs=64.5

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhc
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQK  136 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~  136 (450)
                      .+...|.||||+++|.+||+++|||+||..||.+|+.. ...||.|+..+....+.+|..|.++|+.|....
T Consensus        22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R   92 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR   92 (397)
T ss_pred             ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence            56678999999999999999999999999999999986 568999999998888999999999999997643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.14  E-value=2.7e-11  Score=107.45  Aligned_cols=60  Identities=23%  Similarity=0.444  Sum_probs=51.8

Q ss_pred             cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc---------------CCCCCCCcCCcCCCCCCcchH
Q 041252           64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL---------------GRYTCPTTMQELWDDSVTPNK  123 (450)
Q Consensus        64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~---------------~~~~cP~~~~~l~~~~l~~n~  123 (450)
                      .+..++|.||||.+.++|||++.|||.||+.||.+|+..               +...||.|+.+++...++|..
T Consensus        13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            455678999999999999999999999999999999852               235799999999888888864

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.14  E-value=5.1e-09  Score=103.15  Aligned_cols=250  Identities=18%  Similarity=0.214  Sum_probs=168.6

Q ss_pred             HHHHHHHHHcHHHHHHHHhhCC---hHHHHhhhCCC-CChhhHHHHHHHHHhcCCCchhhh-hccC------CCchHHHH
Q 041252          171 KELHQIAAAHASARKTMVDEGG---VALISSLLGPF-TSHAVGSEAVGVLVNLTLDSESKT-NLMQ------PAKVSLLV  239 (450)
Q Consensus       171 ~~L~~l~~~~~~~r~~i~~~G~---i~~Lv~lL~~~-~~~~v~~~Al~~L~~Ls~~~~~k~-~i~~------~g~i~~Lv  239 (450)
                      ..++.+-+.....|..+.+..+   +..++.+|+.. .+.++....+..+..+..++..+. .+..      .....+++
T Consensus        32 ~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl  111 (312)
T PF03224_consen   32 SLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL  111 (312)
T ss_dssp             HHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH
Confidence            3334444433444544555433   56777777654 577888999999988655554443 3322      23688888


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCC---CccchhHHHHHHHHhccChHHHHHHHhc
Q 041252          240 DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKR---HPNGILPGLSLLRSICLLNEVRSLVVSI  316 (450)
Q Consensus       240 ~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~---~~~~~~~al~aL~~Ls~~~~~~~~iv~~  316 (450)
                      .++.+++..++..|+.+|..|....+...... ..+.++.++.++++..   +.+.+..++.+|.+|...++.|..+.+.
T Consensus       112 ~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~  190 (312)
T PF03224_consen  112 KLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS  190 (312)
T ss_dssp             HH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence            99999999999999999999976554433221 2567888888887621   2345688999999999999999999999


Q ss_pred             CCHHHHHHhc------CC-CChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHhcc
Q 041252          317 GAVPQLVELL------PS-LDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSICK  388 (450)
Q Consensus       317 G~v~~Lv~lL------~~-~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~  388 (450)
                      |+++.|+.+|      .. .+..++-.++.+++.|+-+++....+.. .+.|+.|++++... .+++.+-++++|.|+..
T Consensus       191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~  269 (312)
T PF03224_consen  191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLAILRNLLS  269 (312)
T ss_dssp             HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence            9999999999      22 2578899999999999999999999988 57999999999775 58999999999999999


Q ss_pred             cCchhHHHHHHhcChHHHHHHHHHc-CCCHHHHHH
Q 041252          389 IAPEECSSAAVDAGLAAKLFLVIQS-GCNPVLKQR  422 (450)
Q Consensus       389 ~~~~~~~~~~~~~G~i~~L~~ll~s-~~~~~~k~~  422 (450)
                      .+++.....|+..|+.+.+-.+... -+++++.+-
T Consensus       270 ~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed  304 (312)
T PF03224_consen  270 KAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED  304 (312)
T ss_dssp             SSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred             ccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence            8876677888999886666555532 245666554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.12  E-value=4.4e-09  Score=102.75  Aligned_cols=281  Identities=12%  Similarity=0.077  Sum_probs=203.8

Q ss_pred             HHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChh-------hHHHHHHHHHhcCCCc
Q 041252          152 SELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHA-------VGSEAVGVLVNLTLDS  223 (450)
Q Consensus       152 ~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~-------v~~~Al~~L~~Ls~~~  223 (450)
                      ..+++.+.+. .++.+.-....|...+ +++..+-.+++.|.+.-++.+++...+..       .-..+......|...+
T Consensus       226 ~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD  304 (604)
T KOG4500|consen  226 FMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD  304 (604)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc
Confidence            3455555443 2333333344444444 56678889999999999998887521111       1223444555556667


Q ss_pred             hhhhhccC-CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC----CCccchhHHHH
Q 041252          224 ESKTNLMQ-PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK----RHPNGILPGLS  298 (450)
Q Consensus       224 ~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~----~~~~~~~~al~  298 (450)
                      ++...+.. +..+..++..+.|.+....-.++-+|.|++..++.+.. +.+.+++..|+++|..+    ++...+.+++.
T Consensus       305 eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~-~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ls  383 (604)
T KOG4500|consen  305 ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQ-LVQKDFLNKLISCLMQEKDVDGNVERQHACLS  383 (604)
T ss_pred             hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHH-HHHHHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence            77666655 45999999999999999999999999999988776554 56789999999998652    34566789999


Q ss_pred             HHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh-hHHHHhccCCChHHHHHHHhcCChH-HH
Q 041252          299 LLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPE-GKLALKDCANTIPNTVRLLMRVSED-CT  376 (450)
Q Consensus       299 aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e-~r~~i~~~~g~i~~Lv~lL~~~s~~-~~  376 (450)
                      ||+||.....||..+..+|++++++..+....+.++..-++.|+.+-...+ .-.++.++..-+..||++-.+.+.. +.
T Consensus       384 ALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~  463 (604)
T KOG4500|consen  384 ALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVA  463 (604)
T ss_pred             HHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhh
Confidence            999999999999999999999999999999999999999999998887654 5556666555667777775554433 55


Q ss_pred             HHHHHHHHHhcccCch-hHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252          377 QYALSILWSICKIAPE-ECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       377 e~A~~~L~~L~~~~~~-~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~  435 (450)
                      -...+.|..+-+++.. .....+.+.|++..++.++.+. +-..+..|...|-..+.-|-
T Consensus       464 gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~~~~yl  522 (604)
T KOG4500|consen  464 GESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLSTESKYL  522 (604)
T ss_pred             hhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHHHHHhc
Confidence            5566777777777532 3445566889999999998776 55667777666666555543

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.11  E-value=1.1e-08  Score=106.93  Aligned_cols=247  Identities=14%  Similarity=0.118  Sum_probs=189.5

Q ss_pred             HHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCC
Q 041252          154 LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPA  233 (450)
Q Consensus       154 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g  233 (450)
                      ++..|...  ..+..++..|.......+     ..+....+.+...|... +.+....++.+|..+-........  ..+
T Consensus         8 ~l~~l~~~--~~~~~~L~~l~~~~~~~~-----~l~~~~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~~~~~l--~~~   77 (503)
T PF10508_consen    8 LLEELSSK--AERLEALPELKTELSSSP-----FLERLPEPVLFDCLNTS-NREQVELICDILKRLLSALSPDSL--LPQ   77 (503)
T ss_pred             HHHHHhcc--cchHHHHHHHHHHHhhhh-----HHHhchHHHHHHHHhhc-ChHHHHHHHHHHHHHHhccCHHHH--HHH
Confidence            34444433  345556666655433222     11111123377778765 455556677777664433222222  567


Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHH
Q 041252          234 KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLV  313 (450)
Q Consensus       234 ~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~i  313 (450)
                      ..+.|...|.+.++.+|..++..|.+++..++.....+...++++.++.++.++ +..+.+.|..+|.+|+.++.....+
T Consensus        78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l  156 (503)
T PF10508_consen   78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQL  156 (503)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHH
Confidence            789999999999999999999999999877766667778889999999999886 6888999999999999988888888


Q ss_pred             HhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCch
Q 041252          314 VSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPE  392 (450)
Q Consensus       314 v~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~  392 (450)
                      .+.+.+..|..++...+..++-.+..++..++.. ++....+.+ .|.++.+++.+.+.+.-++.+|+.+|..++...  
T Consensus       157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~dDiLvqlnalell~~La~~~--  233 (503)
T PF10508_consen  157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDSDDILVQLNALELLSELAETP--  233 (503)
T ss_pred             hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh--
Confidence            8999999999999887888999999999999865 667777777 899999999999977889999999999999933  


Q ss_pred             hHHHHHHhcChHHHHHHHHHcC
Q 041252          393 ECSSAAVDAGLAAKLFLVIQSG  414 (450)
Q Consensus       393 ~~~~~~~~~G~i~~L~~ll~s~  414 (450)
                      .....+.+.|+++.|..++...
T Consensus       234 ~g~~yL~~~gi~~~L~~~l~~~  255 (503)
T PF10508_consen  234 HGLQYLEQQGIFDKLSNLLQDS  255 (503)
T ss_pred             hHHHHHHhCCHHHHHHHHHhcc
Confidence            4456778899999999999654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.96  E-value=4.1e-10  Score=74.78  Aligned_cols=38  Identities=32%  Similarity=0.715  Sum_probs=33.4

Q ss_pred             CcCCCCCCCCC-eeCCCCCcccHHHHHHHHhcCCCCCCCc
Q 041252           72 CPISLEPMQDP-VTLCTGQTYERSNILKWFSLGRYTCPTT  110 (450)
Q Consensus        72 Cpi~~~~m~dP-v~~~~g~ty~r~~I~~~~~~~~~~cP~~  110 (450)
                      ||||.+.++|| ++++|||+||++||++|++. +..||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 57899999999999999998 6889986

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=4.8e-08  Score=96.67  Aligned_cols=257  Identities=16%  Similarity=0.137  Sum_probs=180.8

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM  230 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~  230 (450)
                      +..||+.|...+.+.-.-..+.|..++-- .+||..+.+.|.|+.|+++.... ..+.+...+..|.|||.+...+..++
T Consensus       306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~-h~dL~~~tl~LlfNlSFD~glr~KMv  383 (791)
T KOG1222|consen  306 VAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQ-HPDLRKATLMLLFNLSFDSGLRPKMV  383 (791)
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCC-CHHHHHHHHHHhhhccccccccHHHh
Confidence            55677778777777777777888888755 45999999999999999998765 67899999999999999999999999


Q ss_pred             CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHH
Q 041252          231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR  310 (450)
Q Consensus       231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~  310 (450)
                      +.|.+|.|+.+|.++..  ..-|...|+.++.+++. +..+....+++.|++.+-.+.+..+-.+....-.|||.+..|.
T Consensus       384 ~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~-K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNa  460 (791)
T KOG1222|consen  384 NGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDA-KAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNA  460 (791)
T ss_pred             hccchHHHHHHhCCccc--chhhhhhhhhhccCcHH-HHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccc
Confidence            99999999999987543  23567788888665543 4456677888999887766544444333333334555555444


Q ss_pred             HHHHhcCC-------------------------------------HHHHHHhcCC-CChhHHHHHHHHHHHhcCChhhHH
Q 041252          311 SLVVSIGA-------------------------------------VPQLVELLPS-LDPDCLQLALCILDALSSLPEGKL  352 (450)
Q Consensus       311 ~~iv~~G~-------------------------------------v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~e~r~  352 (450)
                      ..+++-.+                                     |.-|...+.. .+++..-.++++|+||...+-...
T Consensus       461 QlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~  540 (791)
T KOG1222|consen  461 QLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWA  540 (791)
T ss_pred             eEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHH
Confidence            43333222                                     2333444432 245567789999999998888888


Q ss_pred             HHhccCCChHHHHHHHhcCC--hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcC
Q 041252          353 ALKDCANTIPNTVRLLMRVS--EDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG  414 (450)
Q Consensus       353 ~i~~~~g~i~~Lv~lL~~~s--~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~  414 (450)
                      .+......+|-+-..|..+-  ....-..+-++..++..  ..++.....+|+++.|+.++++.
T Consensus       541 ~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d--~~cA~Lla~a~~i~tlieLL~a~  602 (791)
T KOG1222|consen  541 KILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD--LDCARLLAPAKLIDTLIELLQAC  602 (791)
T ss_pred             HHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh--hHHHHHhCccccHHHHHHHHHhh
Confidence            88877889999988887653  22222222222222222  24666667899999999999764

>PRK09687 putative lyase; Provisional

Probab=98.93  E-value=1.4e-07  Score=91.13  Aligned_cols=227  Identities=13%  Similarity=0.108  Sum_probs=103.7

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM  230 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~  230 (450)
                      ++.|+..|.+.+..+|..|+..|..+-.           ...++.+..++.+. +..++..|+++|..|...+..     
T Consensus        25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~~~-----   87 (280)
T PRK09687         25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSK-NPIERDIGADILSQLGMAKRC-----   87 (280)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCccc-----
Confidence            4456666666666666666666654421           11234444555443 455555566665554432211     


Q ss_pred             CCCchHHHHHH-hcCCCHHHHHHHHHHHHHHhccCCCh-hhH-------------------------hhhhhHHHHHHHH
Q 041252          231 QPAKVSLLVDM-LNEGSVETKINCTRLIEKLMEEKDFR-PEI-------------------------VSSHRLLIGLMRL  283 (450)
Q Consensus       231 ~~g~i~~Lv~l-L~~~~~~~~~~aa~~L~~La~~~~~~-~~~-------------------------~~~~g~l~~Lv~l  283 (450)
                      ....++.|..+ ++..++.+|..|+.+|.++....... ...                         +.....++.|+.+
T Consensus        88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~  167 (280)
T PRK09687         88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINL  167 (280)
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            12234555544 33445555656666555553211100 000                         0011133444444


Q ss_pred             HhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHH
Q 041252          284 VKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPN  363 (450)
Q Consensus       284 L~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~  363 (450)
                      |+++ ++.++..|+.+|..+....+        .+++.|+.+|.+.+..++..|+.+|..+-.           ..+||.
T Consensus       168 L~d~-~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~  227 (280)
T PRK09687        168 LKDP-NGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSV  227 (280)
T ss_pred             hcCC-CHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHHHHHccCC-----------hhHHHH
Confidence            4433 33444444444444421111        223344445544445555555544443211           234555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041252          364 TVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK  428 (450)
Q Consensus       364 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~  428 (450)
                      |++.|..+.  +...|+.+|..+..            .-+++.|..++....++.++.+|.+.|+
T Consensus       228 Li~~L~~~~--~~~~a~~ALg~ig~------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        228 LIKELKKGT--VGDLIIEAAGELGD------------KTLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             HHHHHcCCc--hHHHHHHHHHhcCC------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence            555555433  23334444333321            1256777777763337777777777665

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.92  E-value=3.1e-10  Score=81.42  Aligned_cols=44  Identities=36%  Similarity=0.785  Sum_probs=31.4

Q ss_pred             CeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhc-CCCCCCCcC
Q 041252           68 SVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSL-GRYTCPTTM  111 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~-~~~~cP~~~  111 (450)
                      ..++||||++.|+|||.- .|||+|+|++|.+|+.. +...||+.+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            468999999999999985 79999999999999954 345699965

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.87  E-value=9.9e-10  Score=73.82  Aligned_cols=36  Identities=31%  Similarity=0.701  Sum_probs=23.3

Q ss_pred             CcCCCCCCCC----CeeCCCCCcccHHHHHHHHhcC---CCCCC
Q 041252           72 CPISLEPMQD----PVTLCTGQTYERSNILKWFSLG---RYTCP  108 (450)
Q Consensus        72 Cpi~~~~m~d----Pv~~~~g~ty~r~~I~~~~~~~---~~~cP  108 (450)
                      ||||.+ |.+    |++++|||+||++||+++++.+   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 999    9999999999999999999864   34577

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=1.1e-06  Score=91.89  Aligned_cols=271  Identities=16%  Similarity=0.190  Sum_probs=199.5

Q ss_pred             hcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC-CCChhhHHHHHHHHHhcCCCch--
Q 041252          149 GRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGP-FTSHAVGSEAVGVLVNLTLDSE--  224 (450)
Q Consensus       149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~-~~~~~v~~~Al~~L~~Ls~~~~--  224 (450)
                      ..|+.|++.+.+. -.+.|+.|+..|..+++   .+|..+...| .++|+..|.. ..|.++...++.+++++..+++  
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            4678888888664 35789999999999986   4888887776 7888998875 3477899999999999765442  


Q ss_pred             -----hh----------hh-ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC--CChhhHhhhhhHHHHHHHHHhc
Q 041252          225 -----SK----------TN-LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK--DFRPEIVSSHRLLIGLMRLVKN  286 (450)
Q Consensus       225 -----~k----------~~-i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~--~~~~~~~~~~g~l~~Lv~lL~~  286 (450)
                           .+          .. |...+-|..++..+..-+..+|..+..+|.+|.+..  +.+..++...-+|..||.+|.+
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence                 22          12 335788999999999999999999999999996543  2334445667789999999998


Q ss_pred             CCCccchhHHHHHHHHhccChHHHHHHHh-cCCHHHHHHhcCCC----ChhHHHHHHHHHHHhcCC-hhhHHHHhccCCC
Q 041252          287 KRHPNGILPGLSLLRSICLLNEVRSLVVS-IGAVPQLVELLPSL----DPDCLQLALCILDALSSL-PEGKLALKDCANT  360 (450)
Q Consensus       287 ~~~~~~~~~al~aL~~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~----~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~  360 (450)
                      . +..++-.++-.|..|..+.....++|. .++...|..++...    ..-+.+.|+..|-||-.+ ..|+.-|.+ .+-
T Consensus       178 s-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE-~~~  255 (970)
T KOG0946|consen  178 S-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE-GSY  255 (970)
T ss_pred             h-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc-ccc
Confidence            6 466778888899999977777777776 78999999999543    236899999999999865 678888888 799


Q ss_pred             hHHHHHHHhcC---C-------h-H--HHHHHHHHHHHhcccCch-----hHHHHHHhcChHHHHHHHHHcCCC-HHHHH
Q 041252          361 IPNTVRLLMRV---S-------E-D--CTQYALSILWSICKIAPE-----ECSSAAVDAGLAAKLFLVIQSGCN-PVLKQ  421 (450)
Q Consensus       361 i~~Lv~lL~~~---s-------~-~--~~e~A~~~L~~L~~~~~~-----~~~~~~~~~G~i~~L~~ll~s~~~-~~~k~  421 (450)
                      ||.|.++|...   .       . +  ..-.|+.++..+......     .+++.+...+++..|+.++-+... .++..
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            99999888642   1       1 1  123355555555443311     234566688999999988755423 34444


Q ss_pred             HHHH
Q 041252          422 RSAE  425 (450)
Q Consensus       422 ~A~~  425 (450)
                      -++.
T Consensus       336 esii  339 (970)
T KOG0946|consen  336 ESII  339 (970)
T ss_pred             HHHH
Confidence            4443

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.79  E-value=4.3e-09  Score=70.72  Aligned_cols=39  Identities=44%  Similarity=0.957  Sum_probs=36.0

Q ss_pred             CcCCCCCCCCCe-eCCCCCcccHHHHHHHHh-cCCCCCCCc
Q 041252           72 CPISLEPMQDPV-TLCTGQTYERSNILKWFS-LGRYTCPTT  110 (450)
Q Consensus        72 Cpi~~~~m~dPv-~~~~g~ty~r~~I~~~~~-~~~~~cP~~  110 (450)
                      ||||.+.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 899999999999999999 556779986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=8.2e-09  Score=93.92  Aligned_cols=75  Identities=27%  Similarity=0.370  Sum_probs=70.3

Q ss_pred             ccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252           63 LAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY  137 (450)
Q Consensus        63 ~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~  137 (450)
                      ..++|+..+|.|+.++|+|||+.++|-||+|..|++++.+-..+.|.|+.+++...++||.+|+..|..|...|.
T Consensus       205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~  279 (284)
T KOG4642|consen  205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENE  279 (284)
T ss_pred             cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence            469999999999999999999999999999999999999766679999999999999999999999999998875

>PRK09687 putative lyase; Provisional

Probab=98.74  E-value=4.8e-07  Score=87.46  Aligned_cols=198  Identities=15%  Similarity=0.069  Sum_probs=119.9

Q ss_pred             hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhh
Q 041252          193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVS  272 (450)
Q Consensus       193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~  272 (450)
                      ++.|...|.+. +..++..|+.+|..+.          ....++.+..++.++++.+|..|+++|..|......      
T Consensus        25 ~~~L~~~L~d~-d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------   87 (280)
T PRK09687         25 DDELFRLLDDH-NSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------   87 (280)
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------
Confidence            67888999775 7789999999998654          356688889999999999999999999998532211      


Q ss_pred             hhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH--------------------HHHHHHh-------cCCHHHHHHh
Q 041252          273 SHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE--------------------VRSLVVS-------IGAVPQLVEL  325 (450)
Q Consensus       273 ~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~--------------------~~~~iv~-------~G~v~~Lv~l  325 (450)
                      ....++.|..++....++.++..++.+|.+++....                    .|...+.       ..+++.|+.+
T Consensus        88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~  167 (280)
T PRK09687         88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINL  167 (280)
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            223567777774443467888899999998863221                    1211111       1134445555


Q ss_pred             cCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHH
Q 041252          326 LPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAA  405 (450)
Q Consensus       326 L~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~  405 (450)
                      |.+.+..++..|+.+|..+...         ...+++.|++.|...+..++..|+.+|..+   ..         .-+++
T Consensus       168 L~d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~---~~---------~~av~  226 (280)
T PRK09687        168 LKDPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRIEAIIGLALR---KD---------KRVLS  226 (280)
T ss_pred             hcCCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHHHHHHHHHcc---CC---------hhHHH
Confidence            5444445555555555444110         123444555555555555555555444332   11         13567


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252          406 KLFLVIQSGCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       406 ~L~~ll~s~~~~~~k~~A~~lL~~ls  431 (450)
                      .|+..++++ .  .+..|...|..+.
T Consensus       227 ~Li~~L~~~-~--~~~~a~~ALg~ig  249 (280)
T PRK09687        227 VLIKELKKG-T--VGDLIIEAAGELG  249 (280)
T ss_pred             HHHHHHcCC-c--hHHHHHHHHHhcC
Confidence            777777765 2  3455555555443

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=1.9e-06  Score=85.61  Aligned_cols=256  Identities=15%  Similarity=0.109  Sum_probs=177.6

Q ss_pred             HHHHHHHhhc---cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh
Q 041252          151 ASELLGTLKK---VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT  227 (450)
Q Consensus       151 i~~Lv~~L~~---~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~  227 (450)
                      ++.+.+.++-   .++..-..|+--|.+++.+ -..-..++..+.|..|+..|... +.+..-..+..|..||...+||.
T Consensus       262 ~dr~~kklk~~~~KQeqLLrva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~  339 (791)
T KOG1222|consen  262 IDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKI  339 (791)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchH
Confidence            4444444432   2334445577778888853 33445667778899999999875 56777788899999999999999


Q ss_pred             hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252          228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN  307 (450)
Q Consensus       228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~  307 (450)
                      .+.+.|.+..|+++.....++.+.....+|.||+-+...+.. +...|.+|.|+.+|.+..   -..-|+..|+.++.++
T Consensus       340 ~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K-Mv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~dD  415 (791)
T KOG1222|consen  340 VMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK-MVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCDD  415 (791)
T ss_pred             HHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH-HhhccchHHHHHHhCCcc---cchhhhhhhhhhccCc
Confidence            999999999999999999999999999999999877655544 567899999999997753   3456888999999999


Q ss_pred             HHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCChhhHHHHhccCCCh-------------------------
Q 041252          308 EVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCILDALSSLPEGKLALKDCANTI-------------------------  361 (450)
Q Consensus       308 ~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i-------------------------  361 (450)
                      ..+..+.--.+|+.+...+-++ +.++-...++.--|||.+..|.+.+++ ..|+                         
T Consensus       416 ~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvce-GqgL~~LM~ra~k~~D~lLmK~vRniSqH  494 (791)
T KOG1222|consen  416 DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCE-GQGLDLLMERAIKSRDLLLMKVVRNISQH  494 (791)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEec-CcchHHHHHHHhcccchHHHHHHHHhhhc
Confidence            9999999999999998887443 333333223222355554433333333 2232                         


Q ss_pred             ------------HHHHHHHhcC-ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcC
Q 041252          362 ------------PNTVRLLMRV-SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG  414 (450)
Q Consensus       362 ------------~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~  414 (450)
                                  ..|...+... ++..--.++++|.+|.--+- .......+...+|.+-..++.|
T Consensus       495 eg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl-dw~~ilq~~~LvPw~k~~L~pg  559 (791)
T KOG1222|consen  495 EGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL-DWAKILQSENLVPWMKTQLQPG  559 (791)
T ss_pred             cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC-CHHHHHhhccccHHHHHhhcCC
Confidence                        2333333332 23334456777777765332 2344445678888888887766

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.73  E-value=3.7e-09  Score=75.88  Aligned_cols=57  Identities=21%  Similarity=0.431  Sum_probs=32.5

Q ss_pred             eeCcCCCCCCCCCee-CCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHH
Q 041252           70 FVCPISLEPMQDPVT-LCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLI  129 (450)
Q Consensus        70 ~~Cpi~~~~m~dPv~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I  129 (450)
                      +.|++|.++|++||. ..|.|.||+.||.+.+..   .||+|+.+-+..++.-|+.|.++|
T Consensus         8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred             cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence            579999999999996 579999999999886543   399999999999999999998876

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.71  E-value=1.1e-05  Score=81.79  Aligned_cols=242  Identities=14%  Similarity=0.075  Sum_probs=174.3

Q ss_pred             CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh-hccC-----CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC
Q 041252          191 GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT-NLMQ-----PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK  264 (450)
Q Consensus       191 G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~-~i~~-----~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~  264 (450)
                      ..+..++.+|+.....++....+..+..+..++..+. .+.+     +....+.+.+|.+++.-+...|..+|..|....
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence            3467788888776567888888888888665554443 2322     466788888998889999999999999986543


Q ss_pred             CChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCC--ChhHHHHHHHHHH
Q 041252          265 DFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSL--DPDCLQLALCILD  342 (450)
Q Consensus       265 ~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~--~~~~~~~al~~L~  342 (450)
                      .....-....-.+.-|...++...+...+..++.+|.+|...++.|..+.+.++++.|+.+|+..  +..++-.++-+++
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW  212 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW  212 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            22211111111233444555544346677888899999999999999999999999999999653  5688999999999


Q ss_pred             HhcCChhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccC-----chhHHHHHHhcChHHHHHHHHHc-CC
Q 041252          343 ALSSLPEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSICKIA-----PEECSSAAVDAGLAAKLFLVIQS-GC  415 (450)
Q Consensus       343 ~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~-----~~~~~~~~~~~G~i~~L~~ll~s-~~  415 (450)
                      .|+=+++....+.. .+.|+.+++++... .+++.+-++.+|.|+...+     .......++..|+.+.+-.+... -+
T Consensus       213 lLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~  291 (429)
T cd00256         213 LLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD  291 (429)
T ss_pred             HHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence            99988887777766 79999999999875 4789999999999998754     11345667788885544444432 24


Q ss_pred             CHHHHHHHHHHHHHHHhh
Q 041252          416 NPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       416 ~~~~k~~A~~lL~~ls~~  433 (450)
                      ++++.+--..+-..+..+
T Consensus       292 DedL~edl~~L~e~L~~~  309 (429)
T cd00256         292 DEDLTDDLKFLTEELKNS  309 (429)
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            567776666666666655

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.69  E-value=1.4e-08  Score=94.23  Aligned_cols=50  Identities=18%  Similarity=0.270  Sum_probs=41.9

Q ss_pred             CCCCeeeCcCCCCCCCCC--------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           65 EIPSVFVCPISLEPMQDP--------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dP--------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      ....+..||||++.+.+|        ++.+|||+||+.||.+|+.. +.+||+||.++.
T Consensus       170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~  227 (238)
T PHA02929        170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI  227 (238)
T ss_pred             cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence            345578999999987764        56689999999999999986 789999998764

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.69  E-value=3.4e-06  Score=85.30  Aligned_cols=281  Identities=14%  Similarity=0.095  Sum_probs=189.3

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM  230 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~  230 (450)
                      ....+..|...+.-....|+..|..+...+..+.......-....|...|++..+...+.-++..|..|...++.|..+.
T Consensus       103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~  182 (429)
T cd00256         103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV  182 (429)
T ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence            34566677776667888888888888754332211111111234555666554345677788889999999999999998


Q ss_pred             CCCchHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh-
Q 041252          231 QPAKVSLLVDMLNEG--SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN-  307 (450)
Q Consensus       231 ~~g~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~-  307 (450)
                      +.++++.|+.+|+..  +.+.+-++.-+++-|+-..+ ..+.....+.++.|+.+++...-..+.+-++.+|+||.... 
T Consensus       183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~  261 (429)
T cd00256         183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV  261 (429)
T ss_pred             HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence            888999999999753  56889999999999976554 34455667899999999997655678889999999998532 


Q ss_pred             ------HHHHHHHhcCCHHHHHHhcCC--CChhHHHHHHHH-------HHHhcCCh------------------------
Q 041252          308 ------EVRSLVVSIGAVPQLVELLPS--LDPDCLQLALCI-------LDALSSLP------------------------  348 (450)
Q Consensus       308 ------~~~~~iv~~G~v~~Lv~lL~~--~~~~~~~~al~~-------L~~L~~~~------------------------  348 (450)
                            .....|++.|..+.+-.+...  +|+++.+.--.+       +..+++-+                        
T Consensus       262 ~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~  341 (429)
T cd00256         262 DREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR  341 (429)
T ss_pred             ccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence                  245677777776654444422  355554433222       23333323                        


Q ss_pred             hhHHHHhccC-CChHHHHHHHhc-CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHH
Q 041252          349 EGKLALKDCA-NTIPNTVRLLMR-VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAEL  426 (450)
Q Consensus       349 e~r~~i~~~~-g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~l  426 (450)
                      ||-..+.++. ..+..|+++|.. .++.+..-|+.=+..++++.|. .+..+-+-|+=..++.+|.+. ++.+|..|...
T Consensus       342 EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL~a  419 (429)
T cd00256         342 ENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR-GKDVVEQLGGKQRVMRLLNHE-DPNVRYEALLA  419 (429)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-HHHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHH
Confidence            3444444421 246788888843 3456666677777777887763 234444678888899999987 78899998876


Q ss_pred             HHHH-Hhhc
Q 041252          427 LKLC-SLNY  434 (450)
Q Consensus       427 L~~l-s~~~  434 (450)
                      +..+ ..||
T Consensus       420 vQklm~~~w  428 (429)
T cd00256         420 VQKLMVHNW  428 (429)
T ss_pred             HHHHHHhcC
Confidence            6654 4445

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.66  E-value=3.4e-07  Score=90.22  Aligned_cols=214  Identities=14%  Similarity=0.156  Sum_probs=148.8

Q ss_pred             HHHHHhhc--cchHHHHHHHHHHHHHHHHcHHHHHHHHhh------CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch
Q 041252          153 ELLGTLKK--VKGQARVQALKELHQIAAAHASARKTMVDE------GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE  224 (450)
Q Consensus       153 ~Lv~~L~~--~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~------G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~  224 (450)
                      -++..|+.  .+.+.....+..+..+..+++...+.+.+.      ....++++++.+. |.-++..|+.+|..|.....
T Consensus        59 ~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~  137 (312)
T PF03224_consen   59 LFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGP  137 (312)
T ss_dssp             ---HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCC
Confidence            34444443  356777888888888888887666666652      2467888888775 78899999999999765443


Q ss_pred             hhhhccCCCchHHHHHHhcC----CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHH------hcCCCccchh
Q 041252          225 SKTNLMQPAKVSLLVDMLNE----GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLV------KNKRHPNGIL  294 (450)
Q Consensus       225 ~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL------~~~~~~~~~~  294 (450)
                      .+..-...+.++.++..|.+    .+.+.+..|+.+|.+|...++.+. .+...++++.|+.++      ........+-
T Consensus       138 ~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~-~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y  216 (312)
T PF03224_consen  138 KRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ-VFWKSNGVSPLFDILRKQATNSNSSGIQLQY  216 (312)
T ss_dssp             T--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH-HHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH-HHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence            33222225667888888765    345667889999999987766554 456688899999999      2222344556


Q ss_pred             HHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCChh--hHHHHhccCCChHHHHHHHhc
Q 041252          295 PGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCILDALSSLPE--GKLALKDCANTIPNTVRLLMR  370 (450)
Q Consensus       295 ~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~~e--~r~~i~~~~g~i~~Lv~lL~~  370 (450)
                      .++-++|-|+.+++....+...+.|+.|+++++.. .+++..-++++|.||...+.  ....++.  ++++.+++.|..
T Consensus       217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~--~~~l~~l~~L~~  293 (312)
T PF03224_consen  217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL--CGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH--H-HHHHHHHHHS
T ss_pred             HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH--ccHHHHHHHHhc
Confidence            89999999999999999999999999999999654 68999999999999998865  7888887  445555555544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=9.3e-07  Score=85.58  Aligned_cols=183  Identities=15%  Similarity=0.123  Sum_probs=149.9

Q ss_pred             ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHH
Q 041252          205 SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLV  284 (450)
Q Consensus       205 ~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL  284 (450)
                      +.+-++.|+.-|..+..+=+|-..+...|+..+++..|++.+.++|+.|+++|...+.+|....+.+.+.|+++.|+..|
T Consensus        96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l  175 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL  175 (342)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence            55667778888888887778888999999999999999999999999999999999999988888888889999999999


Q ss_pred             hcCCCccchhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCC--CChhHHHHHHHHHHHhcCCh-hhHHHHhccCCC
Q 041252          285 KNKRHPNGILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPS--LDPDCLQLALCILDALSSLP-EGKLALKDCANT  360 (450)
Q Consensus       285 ~~~~~~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~--~~~~~~~~al~~L~~L~~~~-e~r~~i~~~~g~  360 (450)
                      .+..+..++..|+.|+.+|-. ++.....+...++...|..+|.+  .+...+..++..+..|.... ..+..+.. .+.
T Consensus       176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~-~~f  254 (342)
T KOG2160|consen  176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS-LGF  254 (342)
T ss_pred             ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH-hhh
Confidence            976545556889999998885 45677888889999999999988  56888999999999998653 33443333 566


Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252          361 IPNTVRLLMRVSEDCTQYALSILWSICK  388 (450)
Q Consensus       361 i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  388 (450)
                      -..++.+.......+.++++.++..+-.
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            6666667677778889988888776544

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.5e-08  Score=91.69  Aligned_cols=57  Identities=26%  Similarity=0.502  Sum_probs=50.7

Q ss_pred             CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc--CCCCCCCcCCcCCCCCCcchH
Q 041252           67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL--GRYTCPTTMQELWDDSVTPNK  123 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~~l~~n~  123 (450)
                      -..|-|-||.+.-+|||++.|||-||=-||.+|+..  +...||+|+..++.+.++|=+
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            357999999999999999999999999999999984  355699999999998888854

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.63  E-value=4.2e-06  Score=93.81  Aligned_cols=224  Identities=17%  Similarity=0.074  Sum_probs=133.2

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      .++.|+..|.+.++.+|..|+..|..+.           ..+.++.|+.+|... +..++..|+.+|..+....      
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~------  683 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDG-AAAVRRAAAEGLRELVEVL------  683 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcc------
Confidence            3567888888888889999999888653           123578888888765 7788888888887663211      


Q ss_pred             cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-----
Q 041252          230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-----  304 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-----  304 (450)
                         ...+.|...|.+.++.+|..|+.+|..+...+            ...|+..|.++ ++.++..|+.+|..+.     
T Consensus       684 ---~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~-d~~VR~~Av~aL~~~~~~~~l  747 (897)
T PRK13800        684 ---PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDP-DHRVRIEAVRALVSVDDVESV  747 (897)
T ss_pred             ---CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCC-CHHHHHHHHHHHhcccCcHHH
Confidence               12346667777777777777777776653111            12234444443 4455555555554431     


Q ss_pred             ------cChHHHHHHHh---------cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh
Q 041252          305 ------LLNEVRSLVVS---------IGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM  369 (450)
Q Consensus       305 ------~~~~~~~~iv~---------~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~  369 (450)
                            .+.+.|...++         .++++.|..++.+.++.++..|+.+|..+...+          ..++.++..|.
T Consensus       748 ~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~  817 (897)
T PRK13800        748 AGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALR  817 (897)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhc
Confidence                  01111211111         123566777777777777777777777664321          12344566666


Q ss_pred             cCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252          370 RVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLC  430 (450)
Q Consensus       370 ~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l  430 (450)
                      ..+..++..|+.+|..+...            ..++.|+.++.+. +..+|+.|+..|..+
T Consensus       818 d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~-~~~VR~~A~~aL~~~  865 (897)
T PRK13800        818 ASAWQVRQGAARALAGAAAD------------VAVPALVEALTDP-HLDVRKAAVLALTRW  865 (897)
T ss_pred             CCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCC-CHHHHHHHHHHHhcc
Confidence            66677777777777554321            2236666666555 566677766666553

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.63  E-value=1.1e-08  Score=96.49  Aligned_cols=65  Identities=20%  Similarity=0.336  Sum_probs=60.3

Q ss_pred             eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHH
Q 041252           69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFS  134 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~  134 (450)
                      .+.|-||.+.|+-|++++||||||--||..++.. ++.||.|..+++...+..|.-|...|+.+..
T Consensus        23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~   87 (442)
T KOG0287|consen   23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNF   87 (442)
T ss_pred             HHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence            4679999999999999999999999999999996 7889999999999999999999999988854

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.63  E-value=4.5e-06  Score=93.55  Aligned_cols=227  Identities=16%  Similarity=0.118  Sum_probs=146.5

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-----
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-----  223 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-----  223 (450)
                      ..++.|+..|++.+..+|..|+..|..+....+          ..+.|...|.+. +..++..|+.+|..+...+     
T Consensus       652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~~~~~~l~  720 (897)
T PRK13800        652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSP-DPVVRAAALDVLRALRAGDAALFA  720 (897)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCC-CHHHHHHHHHHHHhhccCCHHHHH
Confidence            346778888888888999999999877742111          123444555442 4555555555554432110     


Q ss_pred             --------hhhh----hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCcc
Q 041252          224 --------ESKT----NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPN  291 (450)
Q Consensus       224 --------~~k~----~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~  291 (450)
                              ..|.    .+..-+..+.|..++..++.++|..++.+|..+....         ...++.|..+++++ ++.
T Consensus       721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~-d~~  790 (897)
T PRK13800        721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDP-DPL  790 (897)
T ss_pred             HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCC-CHH
Confidence                    0000    0111122344555666666666666666666663221         12257788888876 688


Q ss_pred             chhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC
Q 041252          292 GILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV  371 (450)
Q Consensus       292 ~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~  371 (450)
                      ++..|+.+|.++.....         +++.++..|.+.+..++..|+.+|..+..           ...++.|+.+|...
T Consensus       791 VR~aA~~aLg~~g~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~  850 (897)
T PRK13800        791 VRAAALAALAELGCPPD---------DVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDP  850 (897)
T ss_pred             HHHHHHHHHHhcCCcch---------hHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC
Confidence            88888888888754321         22467888988899999999999987642           35678999999999


Q ss_pred             ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041252          372 SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK  428 (450)
Q Consensus       372 s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~  428 (450)
                      +..++..|+.+|..+. .++ .         ..+.|...+... ++.+|+.|...|.
T Consensus       851 ~~~VR~~A~~aL~~~~-~~~-~---------a~~~L~~al~D~-d~~Vr~~A~~aL~  895 (897)
T PRK13800        851 HLDVRKAAVLALTRWP-GDP-A---------ARDALTTALTDS-DADVRAYARRALA  895 (897)
T ss_pred             CHHHHHHHHHHHhccC-CCH-H---------HHHHHHHHHhCC-CHHHHHHHHHHHh
Confidence            9999999999997761 111 1         245566677665 7889999988875

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=5.7e-06  Score=80.18  Aligned_cols=186  Identities=17%  Similarity=0.157  Sum_probs=149.6

Q ss_pred             ccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-CchhhhhccCCCchHHH
Q 041252          160 KVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSESKTNLMQPAKVSLL  238 (450)
Q Consensus       160 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~k~~i~~~g~i~~L  238 (450)
                      +.+.+.+..|+..|..++. +-+|-.-+...||..+++..|.+. +..+++.|+++|...+. ++.....+++.|+++.|
T Consensus        94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            4556788999999999985 466888999999999999988875 78999999999999655 56788899999999999


Q ss_pred             HHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC-CCccchhHHHHHHHHhc-cChHHHHHHHh
Q 041252          239 VDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK-RHPNGILPGLSLLRSIC-LLNEVRSLVVS  315 (450)
Q Consensus       239 v~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~-~~~~~~~~al~aL~~Ls-~~~~~~~~iv~  315 (450)
                      +..|.+. +.+++..|..++..|...+..-...+-..++...|..++.++ .+...+..++..+..|. .+...+..+-.
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            9999865 678889999999999887766555566667799999999885 34566778888888887 44445554555


Q ss_pred             cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252          316 IGAVPQLVELLPSLDPDCLQLALCILDALSSL  347 (450)
Q Consensus       316 ~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~  347 (450)
                      .|....+..+.++.+.++.+.++.++..+...
T Consensus       252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            77777888888888888888888877766544

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=3.7e-06  Score=88.55  Aligned_cols=258  Identities=16%  Similarity=0.163  Sum_probs=191.2

Q ss_pred             hcHHHHHHHhhcc-chHHHHHHHHHHHHHHH-HcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cchh
Q 041252          149 GRASELLGTLKKV-KGQARVQALKELHQIAA-AHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSES  225 (450)
Q Consensus       149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~-~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~  225 (450)
                      .++..|+.-|... ++..|.+|+.+|..+.. .+++.-..+--.-.||.|+.+|+...+.++.-.|+.+|.+|+. -+..
T Consensus       167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            4677888888764 67788899998876554 4443322333334589999999987788999999999999775 5677


Q ss_pred             hhhccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          226 KTNLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                      ...+++.++||.++.-|.. +..++.+.+..+|..++..+..   .+-..|++-..+..|.= .+..+++.|+.+-.|.|
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDF-FSi~aQR~AlaiaaN~C  322 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDF-FSIHAQRVALAIAANCC  322 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            7888999999999997764 5789999999999999876542   34456666666666643 24568999999999999


Q ss_pred             c--ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC----hhhHHHHhccCCChHHHHHHHhcC----ChH
Q 041252          305 L--LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL----PEGKLALKDCANTIPNTVRLLMRV----SED  374 (450)
Q Consensus       305 ~--~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~----~e~r~~i~~~~g~i~~Lv~lL~~~----s~~  374 (450)
                      .  ..+.=..+++  ++|.|-.+|+..+....|.++-.+..++..    ++--+++.. .|.|...+++|.-.    +..
T Consensus       323 ksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLlsvt~t~Ls~~  399 (1051)
T KOG0168|consen  323 KSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLLSVTPTILSNG  399 (1051)
T ss_pred             hcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHHhcCccccccc
Confidence            3  3333334444  689999999888989999998888888754    455566777 68899999988754    334


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcC
Q 041252          375 CTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG  414 (450)
Q Consensus       375 ~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~  414 (450)
                      .....++.|..+|..++- ..+...+.++...|..+++..
T Consensus       400 ~~~~vIrmls~msS~~pl-~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  400 TYTGVIRMLSLMSSGSPL-LFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             chhHHHHHHHHHccCChH-HHHHHHHhhHHHHHHHHHhcc
Confidence            555567777777887763 345667788888888888643

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.58  E-value=3.6e-08  Score=69.24  Aligned_cols=46  Identities=24%  Similarity=0.343  Sum_probs=40.7

Q ss_pred             eeeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           69 VFVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      ++.|+||++-+.++++.+|||. ||..|+.+|+.. ...||.|++++.
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence            5789999999999999999999 999999999994 788999998764

...

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.57  E-value=2.2e-08  Score=68.36  Aligned_cols=40  Identities=35%  Similarity=0.727  Sum_probs=34.0

Q ss_pred             eCcCCCCCCC---CCeeCCCCCcccHHHHHHHHhcCCCCCCCcC
Q 041252           71 VCPISLEPMQ---DPVTLCTGQTYERSNILKWFSLGRYTCPTTM  111 (450)
Q Consensus        71 ~Cpi~~~~m~---dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~  111 (450)
                      .||||++.|.   .++.++|||.|.++||.+|++. +.+||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            4999999994   4667899999999999999997 57999985

...

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.53  E-value=8.8e-08  Score=65.17  Aligned_cols=43  Identities=42%  Similarity=0.814  Sum_probs=38.5

Q ss_pred             eCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCc
Q 041252           71 VCPISLEPMQDPVTLC-TGQTYERSNILKWFSLGRYTCPTTMQE  113 (450)
Q Consensus        71 ~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~  113 (450)
                      .||||.+.+.+|+.+. |||.|++.|+.+|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4999999999998776 999999999999999767889999864

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=4.3e-08  Score=84.84  Aligned_cols=51  Identities=22%  Similarity=0.477  Sum_probs=43.9

Q ss_pred             eeeCcCCCCCCCC--CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCc
Q 041252           69 VFVCPISLEPMQD--PVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT  120 (450)
Q Consensus        69 ~~~Cpi~~~~m~d--Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~  120 (450)
                      -|.||||++-++.  ||.+.|||.||+.||+..++. ...||.|++.++.+.+.
T Consensus       131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~  183 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFH  183 (187)
T ss_pred             ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhe
Confidence            4999999998886  666889999999999999997 56799999988776554

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.48  E-value=2e-06  Score=71.82  Aligned_cols=154  Identities=11%  Similarity=-0.002  Sum_probs=123.4

Q ss_pred             hhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHH
Q 041252          273 SHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKL  352 (450)
Q Consensus       273 ~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~  352 (450)
                      ..+.+..||.-.....+.++++....-|.|.+-++-|-..+.+..+++.++.-|...+..+++-+++.|+|+|-.+.+.+
T Consensus        14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~   93 (173)
T KOG4646|consen   14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence            45667778876666557788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041252          353 ALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL  429 (450)
Q Consensus       353 ~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~  429 (450)
                      -|++ ++|+|..+..+.++.+.+...|+.+|..++-..+.. +.+.....++..+...-.+. +...+.-|...|+.
T Consensus        94 ~I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~-r~ell~p~Vv~~v~r~~~s~-s~~~rnLa~~fl~~  167 (173)
T KOG4646|consen   94 FIRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTE-RDELLSPAVVRTVQRWRESK-SHDERNLASAFLDK  167 (173)
T ss_pred             HHHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccch-hHHhccHHHHHHHHHHHHHh-hHHHHHHHHHHHHh
Confidence            9998 999999999999999999999999999998766533 44444544555444444343 33445555555443

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=4.4e-06  Score=88.05  Aligned_cols=212  Identities=15%  Similarity=0.122  Sum_probs=154.8

Q ss_pred             HHHhhhCCCCChhhHHHHHHHHHh-cCC-CchhhhhccCCCchHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHh
Q 041252          195 LISSLLGPFTSHAVGSEAVGVLVN-LTL-DSESKTNLMQPAKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIV  271 (450)
Q Consensus       195 ~Lv~lL~~~~~~~v~~~Al~~L~~-Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~  271 (450)
                      .|+.=|+...++..+-+|+.-|+. |+. +++.-..+.-.-.+|.||.+|+++ +.++..+|+++|.+|++.-+.-..++
T Consensus       171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v  250 (1051)
T KOG0168|consen  171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV  250 (1051)
T ss_pred             HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence            344444443356666677777776 444 344444555567899999999976 89999999999999987655555567


Q ss_pred             hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC--hh
Q 041252          272 SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL--PE  349 (450)
Q Consensus       272 ~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e  349 (450)
                      ...++||.|+.=|..=...++-+.++.||..|+..+.  ..+.++|++...+..|.=-+..++..|+++-.|+|..  ++
T Consensus       251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd  328 (1051)
T KOG0168|consen  251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD  328 (1051)
T ss_pred             ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            7888899888755432357788999999999995432  3578899999998888655678999999999999976  55


Q ss_pred             hHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCch--hHHHHHHhcChHHHHHHHH
Q 041252          350 GKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPE--ECSSAAVDAGLAAKLFLVI  411 (450)
Q Consensus       350 ~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~--~~~~~~~~~G~i~~L~~ll  411 (450)
                      .-.-+.+   ++|.|-.+|.....+..|+++-++..++.....  +..+.....|.+....+|+
T Consensus       329 ~f~~v~e---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLl  389 (1051)
T KOG0168|consen  329 EFHFVME---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLL  389 (1051)
T ss_pred             cchHHHH---HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHH
Confidence            5566655   699999999999999999999998887643311  2234444556555555544

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1.3e-07  Score=88.19  Aligned_cols=55  Identities=27%  Similarity=0.507  Sum_probs=48.1

Q ss_pred             CCC-CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCc
Q 041252           65 EIP-SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT  120 (450)
Q Consensus        65 ~~p-~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~  120 (450)
                      .+| ..+.|.+|.+-++||--++|||-||=+||.+|..+ ...||.||+.+++..++
T Consensus       234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi  289 (293)
T KOG0317|consen  234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI  289 (293)
T ss_pred             cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence            444 46999999999999999999999999999999997 56699999998876654

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.43  E-value=1.2e-07  Score=87.71  Aligned_cols=66  Identities=12%  Similarity=0.196  Sum_probs=57.4

Q ss_pred             eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHh
Q 041252           69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQ  135 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~  135 (450)
                      -..|-||.+.++-|+.++||||||.-||..++.. ++.||.|+.+.+..-+..+..++..++.+..-
T Consensus        25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~   90 (391)
T COG5432          25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARN   90 (391)
T ss_pred             HHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence            4679999999999999999999999999999986 78999999988877777777777777776543

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.5e-07  Score=92.24  Aligned_cols=69  Identities=25%  Similarity=0.485  Sum_probs=57.9

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhc
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQK  136 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~  136 (450)
                      ...+.+.||||.+.|++|++++|||+||+.||..++. ....||.|+. .. ..+.+|..+..+++.....+
T Consensus         9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~   77 (386)
T KOG2177|consen    9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS-RNLRPNVLLANLVERLRQLR   77 (386)
T ss_pred             hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-ch-hccCccHHHHHHHHHHHhcC
Confidence            3446788999999999999999999999999999998 5678999995 22 27779999998888876653

>smart00184 RING Ring finger

Probab=98.41  E-value=2.7e-07  Score=60.50  Aligned_cols=39  Identities=51%  Similarity=0.968  Sum_probs=35.9

Q ss_pred             CcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCc
Q 041252           72 CPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTT  110 (450)
Q Consensus        72 Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~  110 (450)
                      ||||.+..++|++++|||.|+..|+.+|+..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999999656779986

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=3.8e-07  Score=98.30  Aligned_cols=74  Identities=32%  Similarity=0.489  Sum_probs=69.3

Q ss_pred             ccCCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252           63 LAEIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY  137 (450)
Q Consensus        63 ~~~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~  137 (450)
                      .+++|++|.-||+.-+|+|||++| +|+|-||+.|+.++.. ..+.|.||.+|+.+.++||.+|+.-|+.|..++.
T Consensus       864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~  938 (943)
T KOG2042|consen  864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR  938 (943)
T ss_pred             hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence            468999999999999999999998 9999999999999986 6889999999999999999999999999988753

>PHA02926 zinc finger-like protein; Provisional

Probab=98.32  E-value=4.4e-07  Score=81.57  Aligned_cols=69  Identities=16%  Similarity=0.256  Sum_probs=49.5

Q ss_pred             chHHHHHhhhc-cCCCCeeeCcCCCCCCCC---------CeeCCCCCcccHHHHHHHHhcC-----CCCCCCcCCcCCCC
Q 041252           53 DLKKMIAELDL-AEIPSVFVCPISLEPMQD---------PVTLCTGQTYERSNILKWFSLG-----RYTCPTTMQELWDD  117 (450)
Q Consensus        53 ~~~~~~~~~~~-~~~p~~~~Cpi~~~~m~d---------Pv~~~~g~ty~r~~I~~~~~~~-----~~~cP~~~~~l~~~  117 (450)
                      +..+++.+-+. .....+..|+||.+...+         +++.+|+|+||.+||.+|.+..     ...||.||..+.  
T Consensus       153 ~i~~il~~ye~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--  230 (242)
T PHA02926        153 DIIKILDKYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--  230 (242)
T ss_pred             chhHHHHHHHHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--
Confidence            34444554443 466678999999998643         4667899999999999998742     345999998764  


Q ss_pred             CCcchH
Q 041252          118 SVTPNK  123 (450)
Q Consensus       118 ~l~~n~  123 (450)
                      .++|++
T Consensus       231 ~I~pSr  236 (242)
T PHA02926        231 NITMSK  236 (242)
T ss_pred             eecccc
Confidence            344443

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.32  E-value=3.1e-05  Score=81.76  Aligned_cols=254  Identities=18%  Similarity=0.244  Sum_probs=169.2

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhc-CCCchhhhhc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNL-TLDSESKTNL  229 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~L-s~~~~~k~~i  229 (450)
                      ++.+...+.+.++.+|.+|+.++..+...+++   .+... .++.+..+|.+. +..+...|+.++..+ ..++...  -
T Consensus       116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~-~~~V~~~a~~~l~~i~~~~~~~~--~  188 (526)
T PF01602_consen  116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDK-DPSVVSAALSLLSEIKCNDDSYK--S  188 (526)
T ss_dssp             HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHS-SHHHHHHHHHHHHHHHCTHHHHT--T
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCC-cchhHHHHHHHHHHHccCcchhh--h
Confidence            45667777888889999999999999887654   23333 578899999665 788999999999988 2221111  1


Q ss_pred             cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHH
Q 041252          230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEV  309 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~  309 (450)
                      .-...+..|..++...++-.+.....+|..++..+....   .....++.+..++.+. ++.+.-.+..++..+..... 
T Consensus       189 ~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~---~~~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~-  263 (526)
T PF01602_consen  189 LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA---DKNRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE-  263 (526)
T ss_dssp             HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH-
T ss_pred             hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh---hHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH-
Confidence            113344555555567788888888888887764432211   1145778888888765 57778888888888887665 


Q ss_pred             HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh-cCChHHHHHHHHHHHHhcc
Q 041252          310 RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM-RVSEDCTQYALSILWSICK  388 (450)
Q Consensus       310 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~  388 (450)
                          .-..+++.|+.+|.+.++.++-.++..|..++...  ...+..    ....+..+. ..+..++..++.+|..++.
T Consensus       264 ----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~~----~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  264 ----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVFN----QSLILFFLLYDDDPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             ----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHGT----HHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred             ----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhhh----hhhhhheecCCCChhHHHHHHHHHhhccc
Confidence                33346678999999888889999999999998754  222221    223344444 6677888999999988876


Q ss_pred             cCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252          389 IAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNY  434 (450)
Q Consensus       389 ~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~  434 (450)
                      ..  + ...     ++..|...+...+++..++.+...+..+...+
T Consensus       334 ~~--n-~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~  371 (526)
T PF01602_consen  334 ES--N-VKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF  371 (526)
T ss_dssp             HH--H-HHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred             cc--c-hhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence            43  2 222     46666666644435667777776666655543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.31  E-value=5e-05  Score=80.23  Aligned_cols=281  Identities=19%  Similarity=0.161  Sum_probs=189.9

Q ss_pred             cchHHHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhh
Q 041252          120 TPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSL  199 (450)
Q Consensus       120 ~~n~~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~l  199 (450)
                      ..|+.++++..-+.+.-....+   +..-=.+..+.+-|.+.++..|..|++.|.++.  +++....     .++.+..+
T Consensus        53 s~~~~~Krl~yl~l~~~~~~~~---~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~l  122 (526)
T PF01602_consen   53 SKDLELKRLGYLYLSLYLHEDP---ELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKL  122 (526)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSH---HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHH
Confidence            6778888887776665321110   000112445666677788889999999999987  3434333     36788888


Q ss_pred             hCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHH
Q 041252          200 LGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIG  279 (450)
Q Consensus       200 L~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~  279 (450)
                      |.+. +.-++..|+.++..+.....  ..+... .++.+..+|.+.++.++..|..++..+ ..++. ...-.-...+..
T Consensus       123 l~~~-~~~VRk~A~~~l~~i~~~~p--~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~-~~~~~~~~~~~~  196 (526)
T PF01602_consen  123 LSDP-SPYVRKKAALALLKIYRKDP--DLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDD-SYKSLIPKLIRI  196 (526)
T ss_dssp             HHSS-SHHHHHHHHHHHHHHHHHCH--CCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHH-HHTTHHHHHHHH
T ss_pred             hcCC-chHHHHHHHHHHHHHhccCH--HHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcc-hhhhhHHHHHHH
Confidence            8875 67899999999888654321  122122 589999999988999999999999999 22211 100111234455


Q ss_pred             HHHHHhcCCCccchhHHHHHHHHhccChH-HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccC
Q 041252          280 LMRLVKNKRHPNGILPGLSLLRSICLLNE-VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCA  358 (450)
Q Consensus       280 Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~-~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~  358 (450)
                      |.+++... ++-.+...++.|..++.... ....   ...++.+..++++.++.+.-.|+.++..+...+.    +..  
T Consensus       197 L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~~~--  266 (526)
T PF01602_consen  197 LCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----LLQ--  266 (526)
T ss_dssp             HHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----HHH--
T ss_pred             hhhccccc-chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----HHH--
Confidence            55555444 57678899999999985433 3311   4566788888888889999999999999988766    332  


Q ss_pred             CChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          359 NTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       359 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      .+++.|++++.+.++.++-.++..|..++...+     ..+. .. ...+..+....+..+|..+..+|..+...
T Consensus       267 ~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~-----~~v~-~~-~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~  334 (526)
T PF01602_consen  267 KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP-----PAVF-NQ-SLILFFLLYDDDPSIRKKALDLLYKLANE  334 (526)
T ss_dssp             HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH-----HHHG-TH-HHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred             hhHHHHHHHhhcccchhehhHHHHHHHhhcccc-----hhhh-hh-hhhhheecCCCChhHHHHHHHHHhhcccc
Confidence            567899999998888899999999999988763     1233 22 23334555344788999999888776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.30  E-value=7.5e-05  Score=77.23  Aligned_cols=118  Identities=18%  Similarity=0.099  Sum_probs=94.7

Q ss_pred             cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhH
Q 041252          316 IGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEEC  394 (450)
Q Consensus       316 ~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~  394 (450)
                      ..+..+||.++.+++..+...++++|.|+.-. ..-|..+.+ .|||..+.+.+.......+..++++|.++..++.+..
T Consensus       418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~  496 (678)
T KOG1293|consen  418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE  496 (678)
T ss_pred             chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence            34777999999888999999999999999855 778888988 7999999999999999999999999999999886543


Q ss_pred             HHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252          395 SSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       395 ~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~  435 (450)
                      + ...-..+...++..+-++....+++.+..+||++.-+.+
T Consensus       497 k-~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~  536 (678)
T KOG1293|consen  497 K-FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR  536 (678)
T ss_pred             H-HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence            3 333333333444444444478999999999999887744

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.29  E-value=1e-06  Score=84.26  Aligned_cols=60  Identities=20%  Similarity=0.270  Sum_probs=45.3

Q ss_pred             CeeeCcCCCC-CCCCCe----eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCC----CcchHHHHH
Q 041252           68 SVFVCPISLE-PMQDPV----TLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDS----VTPNKTLYH  127 (450)
Q Consensus        68 ~~~~Cpi~~~-~m~dPv----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~----l~~n~~L~~  127 (450)
                      ++..||+|+. ..-.|-    +.+|||+||++||...|..+...||.|+.++....    +.++..+.+
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vek   70 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEK   70 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHH
Confidence            3568999996 344553    33699999999999988877788999999887655    455554433

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.6e-06  Score=88.39  Aligned_cols=74  Identities=31%  Similarity=0.398  Sum_probs=68.0

Q ss_pred             ccCCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252           63 LAEIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY  137 (450)
Q Consensus        63 ~~~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~  137 (450)
                      -+++|++|+.|++..+|+|||+++ +|-|.+|+.|..++-. ..+.|..|.|++.++++||..||+.|-.|..+++
T Consensus       848 ~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~  922 (929)
T COG5113         848 MGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKG  922 (929)
T ss_pred             ccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence            478999999999999999999987 8999999999999886 6789999999999999999999999999976644

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=2.2e-07  Score=88.63  Aligned_cols=70  Identities=21%  Similarity=0.320  Sum_probs=59.8

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCcCC-CCCCcchHHHHHHHHHHHH
Q 041252           65 EIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLGRYTCPTTMQELW-DDSVTPNKTLYHLIHTWFS  134 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~-~~~l~~n~~L~~~I~~w~~  134 (450)
                      .+-.+|.||||+++++...++. |+|.||++||-..+..++..||.|++.+. ...|.++..+..+|.+...
T Consensus        39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~  110 (381)
T KOG0311|consen   39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP  110 (381)
T ss_pred             HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence            4556799999999999998875 99999999999999999999999999874 4688888878888766543

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=0.00034  Score=76.71  Aligned_cols=280  Identities=14%  Similarity=0.131  Sum_probs=163.5

Q ss_pred             hcHHHHHHHh----hccchHHHHHHHHHHHHHHHHcHHHHHHHHhhC-ChHHHHhhhCCC---CChhhHHHHHHHHHhcC
Q 041252          149 GRASELLGTL----KKVKGQARVQALKELHQIAAAHASARKTMVDEG-GVALISSLLGPF---TSHAVGSEAVGVLVNLT  220 (450)
Q Consensus       149 ~~i~~Lv~~L----~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G-~i~~Lv~lL~~~---~~~~v~~~Al~~L~~Ls  220 (450)
                      +.++.++.++    ..++..+|..|++++-.++...+.++..+...+ .+|.++..+...   ++.+....++.+|-.|.
T Consensus       155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~  234 (1075)
T KOG2171|consen  155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL  234 (1075)
T ss_pred             hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence            4455555555    344555999999999988876654555555543 367666666432   24445566666666654


Q ss_pred             CCch-h-hhhccCCCchHHHHHHhcCC--CHHHHHHHHHHHHHHhccCC-------------------------------
Q 041252          221 LDSE-S-KTNLMQPAKVSLLVDMLNEG--SVETKINCTRLIEKLMEEKD-------------------------------  265 (450)
Q Consensus       221 ~~~~-~-k~~i~~~g~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~~~~-------------------------------  265 (450)
                      ..+. . +..+  ...|.....+.++.  +..+|..|..+|..+++...                               
T Consensus       235 e~~pk~l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~  312 (1075)
T KOG2171|consen  235 ESEPKLLRPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS  312 (1075)
T ss_pred             hhchHHHHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence            3321 1 1111  11222222222222  34444444444444332200                               


Q ss_pred             -----------ChhhHhhh--------h-------hHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCC
Q 041252          266 -----------FRPEIVSS--------H-------RLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGA  318 (450)
Q Consensus       266 -----------~~~~~~~~--------~-------g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~  318 (450)
                                 ....+..+        .       -.++.+-.+|.+. ++.-+++++.||..++ +..+.-.... ..+
T Consensus       313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l-~~I  390 (1075)
T KOG2171|consen  313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNL-PKI  390 (1075)
T ss_pred             cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHH-HHH
Confidence                       00000000        0       1222233334443 4555667777777776 3332211111 246


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccCchhHH
Q 041252          319 VPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSICKIAPEECS  395 (450)
Q Consensus       319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~~~~  395 (450)
                      ++.++..|.+.++.++..|+.++..++..  |+-.+...+  -.+|.|+..+.+. +++++.+|+.+|.++...++....
T Consensus       391 l~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e--~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l  468 (1075)
T KOG2171|consen  391 LPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE--RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL  468 (1075)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH--hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence            77788888999999999999999999987  666666654  6788899998775 679999999999999887764322


Q ss_pred             HHHHhcChHHHHHH-HHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252          396 SAAVDAGLAAKLFL-VIQSGCNPVLKQRSAELLKLCSLNYTD  436 (450)
Q Consensus       396 ~~~~~~G~i~~L~~-ll~s~~~~~~k~~A~~lL~~ls~~~~~  436 (450)
                      .-- =.+.+.+++. +++++ .+.+++.+...+.-.+...++
T Consensus       469 ~pY-Ld~lm~~~l~~L~~~~-~~~v~e~vvtaIasvA~AA~~  508 (1075)
T KOG2171|consen  469 EPY-LDGLMEKKLLLLLQSS-KPYVQEQAVTAIASVADAAQE  508 (1075)
T ss_pred             HHH-HHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhh
Confidence            111 1466664444 44665 899999999999887766443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.14  E-value=4.4e-06  Score=55.89  Aligned_cols=41  Identities=34%  Similarity=0.502  Sum_probs=38.5

Q ss_pred             ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252          306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS  346 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~  346 (450)
                      +++++..+++.|+||.|+.+|.+.+.++++.|+++|.||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46899999999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.14  E-value=3.1e-05  Score=64.77  Aligned_cols=132  Identities=17%  Similarity=0.148  Sum_probs=106.8

Q ss_pred             CchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHH
Q 041252          233 AKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS  311 (450)
Q Consensus       233 g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~  311 (450)
                      +.++.||.-... .+.+.++....=|.|.+- ++.+-....+..++...+..|... +...++-+.+.|+|+|.++.|.+
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHH
Confidence            456677766654 489999998887888864 456777788889999999999876 57788999999999999999999


Q ss_pred             HHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcC
Q 041252          312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRV  371 (450)
Q Consensus       312 ~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~  371 (450)
                      .|++++++|..+..+++....+...|+.+|..|+-. ..-|..+..     |.+|+.+.+.
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~-----p~Vv~~v~r~  149 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS-----PAVVRTVQRW  149 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc-----HHHHHHHHHH
Confidence            999999999999999999999999999999999854 334555544     5666666543

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.12  E-value=2.4e-06  Score=58.14  Aligned_cols=41  Identities=20%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             eCcCCCCCC---CCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCC
Q 041252           71 VCPISLEPM---QDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQ  112 (450)
Q Consensus        71 ~Cpi~~~~m---~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~  112 (450)
                      .||+|.+.+   +.|++++|||+||..||.++. .....||.|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            399999999   357889999999999999998 44678999974

>PF05536 Neurochondrin: Neurochondrin

Probab=98.07  E-value=0.00036  Score=73.67  Aligned_cols=246  Identities=16%  Similarity=0.148  Sum_probs=158.1

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcH---HHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHA---SARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES  225 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~---~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~  225 (450)
                      ..+++.+.+|+..+.+.|..++--+.++++.++   ..++.|.++=|.+-|-++|++....                   
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~-------------------   65 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVP-------------------   65 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCC-------------------
Confidence            456778888988877788888888888887654   3345677776677888888764210                   


Q ss_pred             hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252          226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL  305 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~  305 (450)
                            .|+          +....+..|..+|..++..++.... -.-.+-||.|++++....+..+...++.+|..++.
T Consensus        66 ------~~~----------~~~~~~~LavsvL~~f~~~~~~a~~-~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias  128 (543)
T PF05536_consen   66 ------SDC----------PPEEYLSLAVSVLAAFCRDPELASS-PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS  128 (543)
T ss_pred             ------CCC----------CHHHHHHHHHHHHHHHcCChhhhcC-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc
Confidence                  000          3345556677777777654332110 11235689999999876434789999999999999


Q ss_pred             ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh----cCChHHHHHHHH
Q 041252          306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM----RVSEDCTQYALS  381 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~----~~s~~~~e~A~~  381 (450)
                      +++.+..+++.|+|+.|.+.+.+ .+...+.|+.+|.+++.... .....++.-.+..++.-+.    ......+-..+.
T Consensus       129 ~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~  206 (543)
T PF05536_consen  129 SPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLE  206 (543)
T ss_pred             CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence            99999999999999999999987 66789999999999886533 2122222233333433333    223344445666


Q ss_pred             HHHHhcccCch---h-HHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252          382 ILWSICKIAPE---E-CSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL  432 (450)
Q Consensus       382 ~L~~L~~~~~~---~-~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~  432 (450)
                      .|..+-...+.   . ....-.-..+..-|..++++.-.+..|..|..+...+-.
T Consensus       207 ~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  207 FLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            77766554421   0 011111233445567888887677777666655544433

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.06  E-value=0.00041  Score=69.70  Aligned_cols=250  Identities=17%  Similarity=0.129  Sum_probs=176.0

Q ss_pred             HHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCC--CHH
Q 041252          171 KELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEG--SVE  248 (450)
Q Consensus       171 ~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~  248 (450)
                      ..|..+-+.+++.|..+.-.-..+.+..++-+. +.+++..+..+++.+..+.+.-..+.+.+.--.++.-|..+  +..
T Consensus         5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~-~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~   83 (371)
T PF14664_consen    5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSD-SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDV   83 (371)
T ss_pred             HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence            344455555665555544333344444444343 47899999999999999988888888888777788878654  677


Q ss_pred             HHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCC
Q 041252          249 TKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPS  328 (450)
Q Consensus       249 ~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~  328 (450)
                      .|++|..+++.+...+....++  ..|++..++.+..+. +...+..++.+|..|+..+.  ..++++|++..|++.+-+
T Consensus        84 ER~QALkliR~~l~~~~~~~~~--~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d  158 (371)
T PF14664_consen   84 EREQALKLIRAFLEIKKGPKEI--PRGVVRALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALID  158 (371)
T ss_pred             HHHHHHHHHHHHHHhcCCcccC--CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHh
Confidence            8999999999997664433332  568889999998886 56788999999999995432  346689999999999987


Q ss_pred             CChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC-------Ch--HHHHHHHHHHHHhcccCchhHHHHHH
Q 041252          329 LDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV-------SE--DCTQYALSILWSICKIAPEECSSAAV  399 (450)
Q Consensus       329 ~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~-------s~--~~~e~A~~~L~~L~~~~~~~~~~~~~  399 (450)
                      +..++.+..+.++-.+-.+|..|.-+.. .--+..++.-....       ..  +--+.+..++..+-+..++-. ....
T Consensus       159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl-~l~~  236 (371)
T PF14664_consen  159 GSFSISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL-YLSM  236 (371)
T ss_pred             ccHhHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee-eeec
Confidence            7767999999999999999999998765 33455555554433       11  233455566666655554321 1112


Q ss_pred             h-cChHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041252          400 D-AGLAAKLFLVIQSGCNPVLKQRSAELLKL  429 (450)
Q Consensus       400 ~-~G~i~~L~~ll~s~~~~~~k~~A~~lL~~  429 (450)
                      . ..++..|+..++.+ ++.+|+....++.-
T Consensus       237 ~~~~~lksLv~~L~~p-~~~ir~~Ildll~d  266 (371)
T PF14664_consen  237 NDFRGLKSLVDSLRLP-NPEIRKAILDLLFD  266 (371)
T ss_pred             CCchHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            2 25778899999888 67788887765554

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.00022  Score=76.98  Aligned_cols=244  Identities=15%  Similarity=0.161  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHHHHHcHHHHHHHHh----hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHH
Q 041252          166 RVQALKELHQIAAAHASARKTMVD----EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDM  241 (450)
Q Consensus       166 ~~~Al~~L~~l~~~~~~~r~~i~~----~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l  241 (450)
                      ..-++.+|+++.+.+++....+..    .|-.+.+...|...++..++..|+.++.-+..+.++-..+++.+.+..|+.+
T Consensus      1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred             HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence            345899999999888855444332    3667788888877667789999999999888888999999999999999998


Q ss_pred             hcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-----------------
Q 041252          242 LNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-----------------  304 (450)
Q Consensus       242 L~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-----------------  304 (450)
                      |. .-+..|+.+..+|+.|++..+..++.+ ++|++..+..++-..+++..+.+++..|..|.                 
T Consensus      1822 LH-S~PS~R~~vL~vLYAL~S~~~i~keA~-~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1822 LH-SQPSMRARVLDVLYALSSNGQIGKEAL-EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred             Hh-cChHHHHHHHHHHHHHhcCcHHHHHHH-hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence            85 457888999999999987765555443 34444444443332222222222222222111                 


Q ss_pred             --------------------------------------------------------------------------------
Q 041252          305 --------------------------------------------------------------------------------  304 (450)
Q Consensus       305 --------------------------------------------------------------------------------  304 (450)
                                                                                                      
T Consensus      1900 P~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVG 1979 (2235)
T KOG1789|consen 1900 PEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVG 1979 (2235)
T ss_pred             hHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccc
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------cChHHHHHHHhcCCHHHHHHhcCCC
Q 041252          305 -------------------------------------------------------LLNEVRSLVVSIGAVPQLVELLPSL  329 (450)
Q Consensus       305 -------------------------------------------------------~~~~~~~~iv~~G~v~~Lv~lL~~~  329 (450)
                                                                             .++.-...+-..|.+|.++..+.-.
T Consensus      1980 G~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~ 2059 (2235)
T KOG1789|consen 1980 GSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ 2059 (2235)
T ss_pred             hhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc
Confidence                                                                   1122222222334555555544333


Q ss_pred             ChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHH
Q 041252          330 DPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFL  409 (450)
Q Consensus       330 ~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~  409 (450)
                      +..+-..|+.+|..|+.+.-...++.. -.++..++..|+... ...-.|+.+|-.+.....++....+...|.++.|+.
T Consensus      2060 n~s~P~SaiRVlH~Lsen~~C~~AMA~-l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~ 2137 (2235)
T KOG1789|consen 2060 NTSAPRSAIRVLHELSENQFCCDAMAQ-LPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQ 2137 (2235)
T ss_pred             CCcCcHHHHHHHHHHhhccHHHHHHhc-cccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHH
Confidence            334457889999999998888888876 567777888876543 233378888888888777676777889999999999


Q ss_pred             HHHc
Q 041252          410 VIQS  413 (450)
Q Consensus       410 ll~s  413 (450)
                      +|..
T Consensus      2138 LLd~ 2141 (2235)
T KOG1789|consen 2138 LLDS 2141 (2235)
T ss_pred             Hhcc
Confidence            9954

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=4e-06  Score=84.19  Aligned_cols=87  Identities=17%  Similarity=0.227  Sum_probs=62.1

Q ss_pred             cchHHHHHhhhccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcC----CCCCCCcCCcCCCCCCcchH----
Q 041252           52 LDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG----RYTCPTTMQELWDDSVTPNK----  123 (450)
Q Consensus        52 ~~~~~~~~~~~~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~----~~~cP~~~~~l~~~~l~~n~----  123 (450)
                      ||-...|+.....-.+.+..||||.+.-.-|+.+.|||.||-.||-++|..+    ...||.|+..+...++.|-+    
T Consensus       169 pD~p~~~e~i~qv~~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~  248 (513)
T KOG2164|consen  169 PDAPVDWEDIFQVYGSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD  248 (513)
T ss_pred             CccccchHHhhhhhcCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence            3333335555445555689999999999999999999999999999988753    45699999887765554432    


Q ss_pred             HHHHHHHHHHHhccc
Q 041252          124 TLYHLIHTWFSQKYL  138 (450)
Q Consensus       124 ~L~~~I~~w~~~~~~  138 (450)
                      .-..-++..+..|+.
T Consensus       249 qkke~l~~~~~~ng~  263 (513)
T KOG2164|consen  249 QKKEELKLHQDPNGI  263 (513)
T ss_pred             cccHHHHHHhcccCC
Confidence            223336666666663

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=3.1e-06  Score=78.11  Aligned_cols=51  Identities=20%  Similarity=0.348  Sum_probs=45.1

Q ss_pred             CeeeCcCCCCCCCCCeeCCCCCcccHHHHHH-HHhcCCCCCCCcCCcCCCCC
Q 041252           68 SVFVCPISLEPMQDPVTLCTGQTYERSNILK-WFSLGRYTCPTTMQELWDDS  118 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~-~~~~~~~~cP~~~~~l~~~~  118 (450)
                      .+|.|+||.+.+.+|+-++|||.||-+||-. |-.+...+||.||+...+..
T Consensus       214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            5899999999999999999999999999999 87776677999998765443

>PTZ00429 beta-adaptin; Provisional

Probab=97.96  E-value=0.0027  Score=69.21  Aligned_cols=264  Identities=11%  Similarity=0.056  Sum_probs=171.1

Q ss_pred             chhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh
Q 041252          146 DVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES  225 (450)
Q Consensus       146 ~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~  225 (450)
                      |.......++..+.+.+.+.|.-..-.|.+.+..+++.-- +    ++..+.+-+.+. ++.++..|+.+|.++...+ .
T Consensus        65 DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-L----aINtl~KDl~d~-Np~IRaLALRtLs~Ir~~~-i  137 (746)
T PTZ00429         65 DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-L----AVNTFLQDTTNS-SPVVRALAVRTMMCIRVSS-V  137 (746)
T ss_pred             CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-H----HHHHHHHHcCCC-CHHHHHHHHHHHHcCCcHH-H
Confidence            3444566777777777666776666666666655443211 1    255666666654 6788999999888755422 1


Q ss_pred             hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252          226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL  305 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~  305 (450)
                      -     .-.+..+.+.|.+.++-+|..|+-++..+-..+.   +.+...++++.|.++|.+. ++.++.+|+.+|..+..
T Consensus       138 ~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~~  208 (746)
T PTZ00429        138 L-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDN-NPVVASNAAAIVCEVND  208 (746)
T ss_pred             H-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCC-CccHHHHHHHHHHHHHH
Confidence            1     2235667777888899999999999999965443   2345667889999998876 79999999999999985


Q ss_pred             ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 041252          306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWS  385 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  385 (450)
                      ....... ...+.+..|+..|.+.++=.+-..+.+|....  |.......   ..+..+...|.+.++.+.-.|+.++..
T Consensus       209 ~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~~---~il~~l~~~Lq~~N~AVVl~Aik~il~  282 (746)
T PTZ00429        209 YGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESAE---TLLTRVLPRMSHQNPAVVMGAIKVVAN  282 (746)
T ss_pred             hCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            4322221 23455667788887666666665555554322  32222221   356677788888889999999999999


Q ss_pred             hcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252          386 ICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNY  434 (450)
Q Consensus       386 L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~  434 (450)
                      +......+....+.. -+..+|+.++ ++ ++.+|--+..-+..+...+
T Consensus       283 l~~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~  328 (746)
T PTZ00429        283 LASRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIF  328 (746)
T ss_pred             hcCcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHC
Confidence            876542222222221 2335566664 33 5778888887666665543

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.96  E-value=4.1e-06  Score=79.75  Aligned_cols=67  Identities=19%  Similarity=0.304  Sum_probs=55.5

Q ss_pred             CCCCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCC----CCCcchHHHHHHHHHH
Q 041252           65 EIPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWD----DSVTPNKTLYHLIHTW  132 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~----~~l~~n~~L~~~I~~w  132 (450)
                      ++-.+.+|++|+..|.|+-++ .|=|||||+||-+++.. ..+||.|+..+-.    ..+.++++|..++...
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            455678999999999999976 49999999999999998 7899999876543    3567778888877655

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.95  E-value=0.00046  Score=68.82  Aligned_cols=265  Identities=18%  Similarity=0.171  Sum_probs=166.2

Q ss_pred             hcHHHHHHHhhccchH--HHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hh
Q 041252          149 GRASELLGTLKKVKGQ--ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ES  225 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~--~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~  225 (450)
                      +.++.|+.++.+++.+  +|.+|.+.|..+..  .+|++.++..| ...++.+-+.....+.+...+++|-++-.+. +.
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet  256 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEET  256 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence            4467788888887654  68999999988764  46889888877 5555555444335678888899999977754 67


Q ss_pred             hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--ChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 041252          226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD--FRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI  303 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~--~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L  303 (450)
                      ...+++.|++..++-..+..++....+|+.+|.|.+-..-  ..+. +.+..+-+-|+-+-.++ +.-.+-.|.-+...|
T Consensus       257 ~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrr-mveKr~~EWLF~LA~sk-Del~R~~AClAV~vl  334 (832)
T KOG3678|consen  257 CQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRR-MVEKRAAEWLFPLAFSK-DELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHH-HHHhhhhhhhhhhhcch-HHHHHHHHHHHHhhh
Confidence            7889999999999988888899999999999999974432  2222 33333334444444443 444566777788888


Q ss_pred             ccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252          304 CLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL  383 (450)
Q Consensus       304 s~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  383 (450)
                      +.+.+.-..+...|-+..+=.++.+.++..-.          . +....+-..-..-++.||-+|.+..-+++  +++++
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FA----------R-D~hd~aQG~~~d~LqRLvPlLdS~R~EAq--~i~AF  401 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFA----------R-DAHDYAQGRGPDDLQRLVPLLDSNRLEAQ--CIGAF  401 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhh----------h-hhhhhhccCChHHHHHhhhhhhcchhhhh--hhHHH
Confidence            88887766666666554333333333432111          1 11111111101235667777764333333  33333


Q ss_pred             HHhcccC---chh-HHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          384 WSICKIA---PEE-CSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       384 ~~L~~~~---~~~-~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      .- |...   ..+ ......+-|+|..|-.+..+. +...-+-|.+.|.++...
T Consensus       402 ~l-~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGEE  453 (832)
T KOG3678|consen  402 YL-CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGEE  453 (832)
T ss_pred             HH-HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhccc
Confidence            22 2211   111 122334679999999888766 566667788889888765

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.91  E-value=1.2e-05  Score=74.92  Aligned_cols=66  Identities=18%  Similarity=0.394  Sum_probs=55.8

Q ss_pred             eeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCc-CCCCCCcchHHHHHHHHHHHHh
Q 041252           70 FVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQE-LWDDSVTPNKTLYHLIHTWFSQ  135 (450)
Q Consensus        70 ~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~-l~~~~l~~n~~L~~~I~~w~~~  135 (450)
                      +.||+|+.++++|+-+ +|||+||..||+..+-...+.||.|... +--+.+.|+......|+.+...
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk  342 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK  342 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence            8999999999999977 7999999999999887768899999642 3346788998888888887663

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.89  E-value=0.0023  Score=63.44  Aligned_cols=275  Identities=16%  Similarity=0.124  Sum_probs=182.0

Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCCh----HHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          153 ELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGV----ALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       153 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i----~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      ..+.+|...+.-....+...+..++......    .+.+..    ..|-..+.++++.....-++..|..+...++.|-.
T Consensus       118 ~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~  193 (442)
T KOG2759|consen  118 SFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA  193 (442)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe
Confidence            4566676666666665666666665432211    111111    22334455544566777888899999999999999


Q ss_pred             ccCCCchHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252          229 LMQPAKVSLLVDMLNE--GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL  306 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~--~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~  306 (450)
                      ++...++..++..+.+  .+.+++-....+++-|+-.... .+.+...+.|+.|..+++...-..+.+-++.++.|+...
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999943  3789999999999999655443 455677889999999998764566888999999999854


Q ss_pred             h-------HHHHHHHhcCCHHHHHHhcCC--CChhHHHH-------HHHHHHHhcCChhhHHHHhc--------------
Q 041252          307 N-------EVRSLVVSIGAVPQLVELLPS--LDPDCLQL-------ALCILDALSSLPEGKLALKD--------------  356 (450)
Q Consensus       307 ~-------~~~~~iv~~G~v~~Lv~lL~~--~~~~~~~~-------al~~L~~L~~~~e~r~~i~~--------------  356 (450)
                      .       +....|+..++.+.+-.+...  +|+++.+.       --.-...|++-++...++..              
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            4       344566666666555444422  24444332       22223345554444443332              


Q ss_pred             -----------cCCChHHHHHHHhcCC-hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHH
Q 041252          357 -----------CANTIPNTVRLLMRVS-EDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSA  424 (450)
Q Consensus       357 -----------~~g~i~~Lv~lL~~~s-~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~  424 (450)
                                 +-..+..|+++|...+ +..-.-|+.=+.....+.|+. ...+.+-|+=..++.++.+. ++.+|..|.
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-k~vv~k~ggKe~vM~Llnh~-d~~Vry~AL  430 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-KAVVEKYGGKERVMNLLNHE-DPEVRYHAL  430 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-hHHHHHhchHHHHHHHhcCC-CchHHHHHH
Confidence                       1125778888887755 566666777777777777743 34455789989999999888 788999988


Q ss_pred             HHHHH-HHhhc
Q 041252          425 ELLKL-CSLNY  434 (450)
Q Consensus       425 ~lL~~-ls~~~  434 (450)
                      -++.. +..+|
T Consensus       431 lavQ~lm~~~w  441 (442)
T KOG2759|consen  431 LAVQKLMVHNW  441 (442)
T ss_pred             HHHHHHHhhcc
Confidence            76654 44334

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.88  E-value=0.00054  Score=67.73  Aligned_cols=229  Identities=15%  Similarity=0.193  Sum_probs=160.1

Q ss_pred             Hhhc-cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhh-CCCCChhhHHHHHHHHHhcCCCchhhhhccCCCc
Q 041252          157 TLKK-VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLL-GPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAK  234 (450)
Q Consensus       157 ~L~~-~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL-~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~  234 (450)
                      .+.+ .+.+-..-|+++|..+... ++.|..++.+.|+..++..| ++..+-.++...+-.++.|+.++...+.+...+.
T Consensus       164 ~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~l  242 (442)
T KOG2759|consen  164 QLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDL  242 (442)
T ss_pred             HHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccH
Confidence            3444 3455667788899988865 56999999999999999988 4444667899999999999998877777777899


Q ss_pred             hHHHHHHhcCC-CHHHHHHHHHHHHHHhccCC---ChhhH---hhhhhHHHHHHHHHhc-CCCccchhHHHH--------
Q 041252          235 VSLLVDMLNEG-SVETKINCTRLIEKLMEEKD---FRPEI---VSSHRLLIGLMRLVKN-KRHPNGILPGLS--------  298 (450)
Q Consensus       235 i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~---~~~~~---~~~~g~l~~Lv~lL~~-~~~~~~~~~al~--------  298 (450)
                      |+.|.+++++. -..+-.-+..+++|+.+..+   ..+.+   +...+ ++.-++.|.. +.+.+-....+.        
T Consensus       243 i~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~e~L~~  321 (442)
T KOG2759|consen  243 IQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKYSDEDLVDDIEFLTEKLKN  321 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            99999999865 45566677888999976553   12222   22223 3333444443 322211111111        


Q ss_pred             HHHHhccChH------------------------HHHHHHh--cCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCC-hhh
Q 041252          299 LLRSICLLNE------------------------VRSLVVS--IGAVPQLVELLPSL-DPDCLQLALCILDALSSL-PEG  350 (450)
Q Consensus       299 aL~~Ls~~~~------------------------~~~~iv~--~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~-~e~  350 (450)
                      -...||+.++                        |..++-+  ...+..|+.+|..+ ++.+..-|+.=+...... |++
T Consensus       322 svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g  401 (442)
T KOG2759|consen  322 SVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG  401 (442)
T ss_pred             HHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH
Confidence            1122333322                        3334443  24788999999665 477777888888887765 999


Q ss_pred             HHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252          351 KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK  388 (450)
Q Consensus       351 r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  388 (450)
                      +..+.+ -||=+.+.++|.+.+++++-+|+.++-.+..
T Consensus       402 k~vv~k-~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  402 KAVVEK-YGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             hHHHHH-hchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            999988 8999999999999999999999999877654

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.0028  Score=60.47  Aligned_cols=271  Identities=15%  Similarity=0.170  Sum_probs=171.5

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHH-hhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMV-DEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~-~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      ..+++..|.+.++.+|..|+.-+..++..  ..+.... +.-.++.+..++... .+  .+.|+.+|.|++..+..++.+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~l   79 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKL   79 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHH
Confidence            45788999999999999999888888755  2222222 223467788888764 22  778999999999999888888


Q ss_pred             cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhh-----hhHHHHHHHHHhc-CCCccc-hhHHHHHHHH
Q 041252          230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSS-----HRLLIGLMRLVKN-KRHPNG-ILPGLSLLRS  302 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~-----~g~l~~Lv~lL~~-~~~~~~-~~~al~aL~~  302 (450)
                      ++- .+..+++.+.......-...+.+|.||+.+++....+...     ..++..|++.+-+ +.+..+ ....+..+.|
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            766 7888888887665566677888999998877655444321     1234444444333 222212 3467778999


Q ss_pred             hccChHHHHHHHhcCCHHH-HHHhcCCCChhH-HHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh-----------
Q 041252          303 ICLLNEVRSLVVSIGAVPQ-LVELLPSLDPDC-LQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM-----------  369 (450)
Q Consensus       303 Ls~~~~~~~~iv~~G~v~~-Lv~lL~~~~~~~-~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~-----------  369 (450)
                      |+..+..|..+.+...++. -+.-+.+.+..+ +...+++|.|.|-.......+.+  -.+..|.-+|.           
T Consensus       159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~--e~~~lLp~iLlPlagpee~sEE  236 (353)
T KOG2973|consen  159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD--ESINLLPAILLPLAGPEELSEE  236 (353)
T ss_pred             HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc--chHHHHHHHHhhcCCccccCHH
Confidence            9999999988887654332 222223333333 45568889998866555555544  12223322222           


Q ss_pred             -------------c-----CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Q 041252          370 -------------R-----VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS-GCNPVLKQRSAELLKLC  430 (450)
Q Consensus       370 -------------~-----~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s-~~~~~~k~~A~~lL~~l  430 (450)
                                   .     .++.++..-+.+|.-||.-..  -++.+...|+- .++.-+.. ..+++.++++-.+..++
T Consensus       237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~--GRe~lR~kgvY-pilRElhk~e~ded~~~ace~vvq~L  313 (353)
T KOG2973|consen  237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA--GREVLRSKGVY-PILRELHKWEEDEDIREACEQVVQML  313 (353)
T ss_pred             HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH--hHHHHHhcCch-HHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence                         1     135677778888888887442  23333455664 45555544 34577777777777665


Q ss_pred             Hh
Q 041252          431 SL  432 (450)
Q Consensus       431 s~  432 (450)
                      -.
T Consensus       314 v~  315 (353)
T KOG2973|consen  314 VR  315 (353)
T ss_pred             Hh
Confidence            44

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.87  E-value=1.1e-05  Score=61.41  Aligned_cols=39  Identities=33%  Similarity=0.652  Sum_probs=32.1

Q ss_pred             CcCCCCCCCCC-------------eeCCCCCcccHHHHHHHHhcCCCCCCCcC
Q 041252           72 CPISLEPMQDP-------------VTLCTGQTYERSNILKWFSLGRYTCPTTM  111 (450)
Q Consensus        72 Cpi~~~~m~dP-------------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~  111 (450)
                      |+||++.|.||             +...|||.|-..||++|++. +.+||.||
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            99999999543             23579999999999999997 56999996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PF05536 Neurochondrin: Neurochondrin

Probab=97.86  E-value=0.00033  Score=73.94  Aligned_cols=154  Identities=23%  Similarity=0.314  Sum_probs=119.5

Q ss_pred             CchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCC----hhhHhhhhhHHHHHHHHHhcCCCc------cchhHHHHHHHH
Q 041252          233 AKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF----RPEIVSSHRLLIGLMRLVKNKRHP------NGILPGLSLLRS  302 (450)
Q Consensus       233 g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~----~~~~~~~~g~l~~Lv~lL~~~~~~------~~~~~al~aL~~  302 (450)
                      ..+...+.+|++.+.+-|-.+..++..+...++.    ++.+..+.| ..-|-++|+.+..+      ..+.-|+..|..
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~   83 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA   83 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence            4567778889988877777777778888755442    223455556 57788888874322      234577788889


Q ss_pred             hccChHHH--HHHHhcCCHHHHHHhcCCCCh-hHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHH
Q 041252          303 ICLLNEVR--SLVVSIGAVPQLVELLPSLDP-DCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYA  379 (450)
Q Consensus       303 Ls~~~~~~--~~iv~~G~v~~Lv~lL~~~~~-~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A  379 (450)
                      +|..++..  ..++  +-||.|++++.+.+. ++...|+.+|..++.+++|+..+.+ .|+|+.|++.+.+ .+...+.|
T Consensus        84 f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~A  159 (543)
T PF05536_consen   84 FCRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIA  159 (543)
T ss_pred             HcCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHH
Confidence            99877654  3343  569999999977766 9999999999999999999999999 8999999999987 66778999


Q ss_pred             HHHHHHhcccCc
Q 041252          380 LSILWSICKIAP  391 (450)
Q Consensus       380 ~~~L~~L~~~~~  391 (450)
                      +.+|.+++....
T Consensus       160 l~lL~~Lls~~~  171 (543)
T PF05536_consen  160 LNLLLNLLSRLG  171 (543)
T ss_pred             HHHHHHHHHhcc
Confidence            999999877554

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.0014  Score=65.08  Aligned_cols=265  Identities=15%  Similarity=0.126  Sum_probs=181.0

Q ss_pred             HHHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcH---------HHHHHHHhhCCh
Q 041252          123 KTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHA---------SARKTMVDEGGV  193 (450)
Q Consensus       123 ~~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~---------~~r~~i~~~G~i  193 (450)
                      ..|...||++-.-...|..-..--....++.++.+|...+.++-...+.-|+.++..+.         ..-.++++.+.+
T Consensus        99 ~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl  178 (536)
T KOG2734|consen   99 VDLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL  178 (536)
T ss_pred             ccHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence            34677787775543322211111112457889999999888888888888888876441         234567788889


Q ss_pred             HHHHhhhCCCCChhhH------HHHHHHHHhcCC-CchhhhhccCCCchHHHHHHhcCC--CHHHHHHHHHHHHHHhccC
Q 041252          194 ALISSLLGPFTSHAVG------SEAVGVLVNLTL-DSESKTNLMQPAKVSLLVDMLNEG--SVETKINCTRLIEKLMEEK  264 (450)
Q Consensus       194 ~~Lv~lL~~~~~~~v~------~~Al~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~~~  264 (450)
                      +.|+.-+.+. ++.+.      .++++++-|+.. .++....+++.|.+.-|+.-+...  -...+..|..+|.-+..++
T Consensus       179 aLLvqnveRL-dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s  257 (536)
T KOG2734|consen  179 ALLVQNVERL-DESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNS  257 (536)
T ss_pred             HHHHHHHHHh-hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccC
Confidence            9998877664 44444      346677777554 456666777777776666644322  3455778888888776666


Q ss_pred             CChhhHhhhhhHHHHHHHHHhc--CCCc------cchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHH
Q 041252          265 DFRPEIVSSHRLLIGLMRLVKN--KRHP------NGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQL  336 (450)
Q Consensus       265 ~~~~~~~~~~g~l~~Lv~lL~~--~~~~------~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~  336 (450)
                      +.++.......++..|++-+.-  ..+|      +..++...+|+.+-..+.||..++...++....-+++. ....+..
T Consensus       258 ~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~S  336 (536)
T KOG2734|consen  258 DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGS  336 (536)
T ss_pred             chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhh
Confidence            6566666777777877775532  1122      22346666677777899999999998888777766765 5567888


Q ss_pred             HHHHHHHhcCCh---hhHHHHhccCCChHHHHHHHhc---------CC-hHHHHHHHHHHHHhcccC
Q 041252          337 ALCILDALSSLP---EGKLALKDCANTIPNTVRLLMR---------VS-EDCTQYALSILWSICKIA  390 (450)
Q Consensus       337 al~~L~~L~~~~---e~r~~i~~~~g~i~~Lv~lL~~---------~s-~~~~e~A~~~L~~L~~~~  390 (450)
                      ++++|.....++   .++..+++ .+|+..+.-+.+.         .+ ....|+.+++||.+-.+.
T Consensus       337 alkvLd~am~g~~gt~~C~kfVe-~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~  402 (536)
T KOG2734|consen  337 ALKVLDHAMFGPEGTPNCNKFVE-ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL  402 (536)
T ss_pred             HHHHHHHHHhCCCchHHHHHHHH-HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence            999999988775   47888888 7899988888772         22 467789999999886644

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.00038  Score=73.36  Aligned_cols=197  Identities=19%  Similarity=0.197  Sum_probs=151.1

Q ss_pred             CchHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC-CCccchhHHHHHHHHhccChH--
Q 041252          233 AKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK-RHPNGILPGLSLLRSICLLNE--  308 (450)
Q Consensus       233 g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~-~~~~~~~~al~aL~~Ls~~~~--  308 (450)
                      ..|+.|++-+.+. -.+-|..|+..|..++..  .+. .++.. ++++|+..|... .+++....++.++.++..+++  
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk--YR~-~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK--YRE-EVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH--HHH-HHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            4588888888755 678899999999999743  222 23334 489999999754 578889999999999986653  


Q ss_pred             ----H-H----------HHHH-hcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhc
Q 041252          309 ----V-R----------SLVV-SIGAVPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMR  370 (450)
Q Consensus       309 ----~-~----------~~iv-~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~  370 (450)
                          + +          ..++ ..+-|..|+..+...|-.++..++..|.+|-++  .+-+.++..++-||..++.+|..
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence                1 1          1222 357899999999988999999999999999766  78899988889999999999998


Q ss_pred             CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc-CCCH--HHHHHHHHHH-HHHHhhc
Q 041252          371 VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS-GCNP--VLKQRSAELL-KLCSLNY  434 (450)
Q Consensus       371 ~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s-~~~~--~~k~~A~~lL-~~ls~~~  434 (450)
                      .-+.++..|+-.|..|.+.++ ..++.++=.+++..|+.++.. |+.+  .+-+-+..+| .+|..|.
T Consensus       178 srE~IRNe~iLlL~eL~k~n~-~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~  244 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNS-SIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI  244 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCc-hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence            888899999999999999886 556666657899999999964 3222  3445555544 4466663

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.84  E-value=0.00025  Score=70.70  Aligned_cols=160  Identities=14%  Similarity=0.130  Sum_probs=122.5

Q ss_pred             hhccCCCchHHHHHHhcCCCHHH--HHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          227 TNLMQPAKVSLLVDMLNEGSVET--KINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~~~~~--~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                      ..|...|++..|++++...+.+.  |..|+.+|..+.... . .+.+...| +..++.+-+....++.....++.|.++-
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae-N-~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE-N-RDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh-h-hhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            45667899999999999886555  999999999884322 1 22233333 3444444444445667788999999998


Q ss_pred             cC-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHH
Q 041252          305 LL-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALS  381 (450)
Q Consensus       305 ~~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~  381 (450)
                      .| ++.+..++++|++++++--.+..++.+...|.-+|.|.+-+  .+.+..+++ ..+-+-|.-+-+..++-.+-+|+-
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDel~R~~ACl  329 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDELLRLHACL  329 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHHHHHHHHHH
Confidence            54 56899999999999999888888999999999999999855  678888887 567777777777777788889988


Q ss_pred             HHHHhcccC
Q 041252          382 ILWSICKIA  390 (450)
Q Consensus       382 ~L~~L~~~~  390 (450)
                      ++..|+.+.
T Consensus       330 AV~vlat~K  338 (832)
T KOG3678|consen  330 AVAVLATNK  338 (832)
T ss_pred             HHhhhhhhh
Confidence            888877654

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.83  E-value=1.2e-05  Score=81.33  Aligned_cols=69  Identities=23%  Similarity=0.407  Sum_probs=56.6

Q ss_pred             CCCCeeeCcCCCCCCCCCee-CCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcc-hHHHHHHHHHHHH
Q 041252           65 EIPSVFVCPISLEPMQDPVT-LCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTP-NKTLYHLIHTWFS  134 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~-n~~L~~~I~~w~~  134 (450)
                      ++..++.||+|..++.||+. +.|||.||+.||.+|... +..||.|+..+......+ ...++..+..|..
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i   87 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPI   87 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhccc
Confidence            36678999999999999998 499999999999999998 899999988876655554 4456666766633

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.83  E-value=3e-05  Score=51.84  Aligned_cols=41  Identities=29%  Similarity=0.331  Sum_probs=38.0

Q ss_pred             ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252          347 LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK  388 (450)
Q Consensus       347 ~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  388 (450)
                      +++++..+++ .|+||.|+++|.+.+..+++.|+++|++|+.
T Consensus         1 ~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVE-AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHH-TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHH-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            4789999999 8999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.82  E-value=0.00021  Score=74.07  Aligned_cols=145  Identities=11%  Similarity=0.066  Sum_probs=110.4

Q ss_pred             CCCHHHHHHHHHHHHHHhccCC-ChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCCHHH
Q 041252          244 EGSVETKINCTRLIEKLMEEKD-FRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQ  321 (450)
Q Consensus       244 ~~~~~~~~~aa~~L~~La~~~~-~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~  321 (450)
                      ..+...+..|+..+.+++..-+ .+.. .....+..+|++++.++ +..++..++++|.|+. .....|..+.+.|+|+.
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~  465 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTG-LKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI  465 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcC-CccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence            3466777777777777753211 1111 34456789999999776 5678889999999998 45668999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHhcCC-hhh-HHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCc
Q 041252          322 LVELLPSLDPDCLQLALCILDALSSL-PEG-KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP  391 (450)
Q Consensus       322 Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~-r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~  391 (450)
                      +..++.+.+..++..++++|+++.-+ ++- +.+... -=+..-++.+.......++|.+...|.|+...+.
T Consensus       466 l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~-ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~  536 (678)
T KOG1293|consen  466 LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLA-KIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR  536 (678)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHH-HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence            99999999999999999999999855 333 333333 2345566777777889999999999999988764

>PTZ00429 beta-adaptin; Provisional

Probab=97.81  E-value=0.0042  Score=67.72  Aligned_cols=251  Identities=16%  Similarity=0.098  Sum_probs=151.8

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      |-+.+|-..|.+.+...+..|++.+-.......+.-      -+.+-++.++.+. +.+++.-.--.|.+.+........
T Consensus        32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pelal  104 (746)
T PTZ00429         32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPEKAL  104 (746)
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHHH
Confidence            446678888888777777788877554432221111      1345566677654 666666555555555543222111


Q ss_pred             ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252          229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE  308 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~  308 (450)
                      +    ++..+.+=+.+.++.+|..|.++|..+-..     .++  .-++..+.+.+.+. ++-+++.|+-++..+-....
T Consensus       105 L----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~--e~l~~~lkk~L~D~-~pYVRKtAalai~Kly~~~p  172 (746)
T PTZ00429        105 L----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVL--EYTLEPLRRAVADP-DPYVRKTAAMGLGKLFHDDM  172 (746)
T ss_pred             H----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCc
Confidence            2    366677777888999999988887776321     111  22456677777775 79999999999998864322


Q ss_pred             HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252          309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK  388 (450)
Q Consensus       309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  388 (450)
                        ..+.+.|.++.|.++|.+.++.++.+|+.+|..+......+-.+.  .+.+..|+..|...++-.+-..+.+|.   .
T Consensus       173 --elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~L~e~~EW~Qi~IL~lL~---~  245 (746)
T PTZ00429        173 --QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYHLPECNEWGQLYILELLA---A  245 (746)
T ss_pred             --ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHHhhcCChHHHHHHHHHHH---h
Confidence              233467889999999999999999999999999986532222222  234556666665556555555555553   3


Q ss_pred             cCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041252          389 IAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL  429 (450)
Q Consensus       389 ~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~  429 (450)
                      ..|.+. .++  ...+..+...+++. ++.+--.|..++-.
T Consensus       246 y~P~~~-~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~  282 (746)
T PTZ00429        246 QRPSDK-ESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVAN  282 (746)
T ss_pred             cCCCCc-HHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence            322211 111  23445555556665 44444444444433

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.00066  Score=74.53  Aligned_cols=232  Identities=16%  Similarity=0.142  Sum_probs=148.3

Q ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhhhcc
Q 041252          152 SELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLM  230 (450)
Q Consensus       152 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~  230 (450)
                      +.+-.+|.+.+...|..|+.+|..++.+..+.-.... ...++.++..|... ...|+..|+.++..++.+- ..-..-.
T Consensus       351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~  428 (1075)
T KOG2171|consen  351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKH  428 (1075)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence            3445566788888999999999998876543211110 13456667777765 6789999999999998753 2222223


Q ss_pred             CCCchHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHH
Q 041252          231 QPAKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEV  309 (450)
Q Consensus       231 ~~g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~  309 (450)
                      ....++.|+..+.+. ++.++.+|+.+|.++++..+...-.-.=.+++..++.+|..++.+.+++.++.+|...+..-+.
T Consensus       429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~  508 (1075)
T KOG2171|consen  429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE  508 (1075)
T ss_pred             HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence            355677888888865 8899999999999998765432211122355564555666666788999999999998854332


Q ss_pred             HHHHHhcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhcC--ChhhHHHHhccCCChHHHHHHHhcC-------ChHHHHHH
Q 041252          310 RSLVVSIGAVPQLVELLPSLD-PDCLQLALCILDALSS--LPEGKLALKDCANTIPNTVRLLMRV-------SEDCTQYA  379 (450)
Q Consensus       310 ~~~iv~~G~v~~Lv~lL~~~~-~~~~~~al~~L~~L~~--~~e~r~~i~~~~g~i~~Lv~lL~~~-------s~~~~e~A  379 (450)
                      .-.=-=.-.+|.|..+|...+ .+.++...+++..++.  ..-||..|...   ...+++++...       +....++-
T Consensus       509 ~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~---a~eliqll~~~~~~~~~~dd~~~sy~  585 (1075)
T KOG2171|consen  509 KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPL---AEELIQLLLELQGSDQDDDDPLRSYM  585 (1075)
T ss_pred             hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHh---HHHHHHHHHhhcccchhhccccHHHH
Confidence            211111245778888886654 6666666666665553  35577777652   33444444332       34455666


Q ss_pred             HHHHHHhcc
Q 041252          380 LSILWSICK  388 (450)
Q Consensus       380 ~~~L~~L~~  388 (450)
                      ..+..++|+
T Consensus       586 ~~~warmc~  594 (1075)
T KOG2171|consen  586 IAFWARMCR  594 (1075)
T ss_pred             HHHHHHHHH
Confidence            666666665

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=0.00064  Score=64.67  Aligned_cols=193  Identities=18%  Similarity=0.185  Sum_probs=134.6

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHH
Q 041252          235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVV  314 (450)
Q Consensus       235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv  314 (450)
                      .-.++.+|.+.++.+|..|...+..|+.. ..+...-.+...++.+.+++++.. +  ...|+.+|.|++..+..++.+.
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~~~l~~~ll   80 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQKEELRKKLL   80 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhhHHHHHHHH
Confidence            34678899999999999999999988655 333222244567888999988752 3  7789999999999999999999


Q ss_pred             hcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhc-cC----CChHHHHHHHhcCCh---HHHHHHHHHHHHh
Q 041252          315 SIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKD-CA----NTIPNTVRLLMRVSE---DCTQYALSILWSI  386 (450)
Q Consensus       315 ~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~-~~----g~i~~Lv~lL~~~s~---~~~e~A~~~L~~L  386 (450)
                      +. .+..++.++.+........++.+|.||+..+....++.. ..    .++..++...-..+-   .--.+-+.++.++
T Consensus        81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl  159 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL  159 (353)
T ss_pred             HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence            88 888888888877678899999999999998765555432 12    466666666655442   2346677788888


Q ss_pred             cccCchhHHHHHHhcC--hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252          387 CKIAPEECSSAAVDAG--LAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       387 ~~~~~~~~~~~~~~~G--~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~  435 (450)
                      ++....  +....+..  ...+|+.+-+ ..+..-|...+..||+|.....
T Consensus       160 s~~~~g--R~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~  207 (353)
T KOG2973|consen  160 SQFEAG--RKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAK  207 (353)
T ss_pred             hhhhhh--hhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccch
Confidence            876532  23333322  2233333333 3355566777789999876643

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=1.8e-05  Score=79.12  Aligned_cols=71  Identities=23%  Similarity=0.391  Sum_probs=58.4

Q ss_pred             cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC-----CCCcchHHHHHHHHHHHHh
Q 041252           64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD-----DSVTPNKTLYHLIHTWFSQ  135 (450)
Q Consensus        64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-----~~l~~n~~L~~~I~~w~~~  135 (450)
                      ..++++|-|-||...+.+||+++|||+||+.||.+.+.. ...||.|+.++..     ....+|+.++.+|..|+..
T Consensus        79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            467899999999999999999999999999999997774 6779999988764     1223477777888877664

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=1.4e-05  Score=84.08  Aligned_cols=54  Identities=13%  Similarity=0.295  Sum_probs=48.1

Q ss_pred             CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcc
Q 041252           68 SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTP  121 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~  121 (450)
                      .-++||+|..=.+|-|++.|||.||..||..-+......||.|+..|...++.+
T Consensus       642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence            457999999999999999999999999999999977889999999987766543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.62  E-value=0.018  Score=57.94  Aligned_cols=273  Identities=15%  Similarity=0.107  Sum_probs=179.0

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC-ChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT-SHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      .+.+..++-+.+.++|..+.+.+|.+..+ ...-+.+.+.+.--.++..|.... .+.-+++|+..++.+.....+.. .
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~-~  104 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK-E  104 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc-c
Confidence            34444444444588999999999998854 556677777775556667675432 34567789999887544322222 2


Q ss_pred             cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHH
Q 041252          230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEV  309 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~  309 (450)
                      +..|.+..+|.+..+.+...+..|..+|.+|+-.++   +++...|++..|++.+-++ ..+.....+.++..+-.++..
T Consensus       105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p~t  180 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDG-SFSISESLLDTLLYLLDSPRT  180 (371)
T ss_pred             CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCcch
Confidence            367889999999999999999999999999986654   3566778899999998875 344677788888888888888


Q ss_pred             HHHHHhcCCHHHHHHhcCCC-------Ch--hHHHHHHHHHHHhcCChhhHHHHhcc-CCChHHHHHHHhcCChHHHHHH
Q 041252          310 RSLVVSIGAVPQLVELLPSL-------DP--DCLQLALCILDALSSLPEGKLALKDC-ANTIPNTVRLLMRVSEDCTQYA  379 (450)
Q Consensus       310 ~~~iv~~G~v~~Lv~lL~~~-------~~--~~~~~al~~L~~L~~~~e~r~~i~~~-~g~i~~Lv~lL~~~s~~~~e~A  379 (450)
                      |..+...--+..++.-+.+.       +.  +....+..++..+-.+=.|--.+..+ ..++..||..|...++++++..
T Consensus       181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I  260 (371)
T PF14664_consen  181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI  260 (371)
T ss_pred             hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence            87665433344444444222       22  23444444444444433333333321 2477778887777776777766


Q ss_pred             HHHHHHhcc------------------cC--------------------------ch---hH----HHHHHhcChHHHHH
Q 041252          380 LSILWSICK------------------IA--------------------------PE---EC----SSAAVDAGLAAKLF  408 (450)
Q Consensus       380 ~~~L~~L~~------------------~~--------------------------~~---~~----~~~~~~~G~i~~L~  408 (450)
                      +.+|..+-.                  ..                          .+   +.    ....+++|.++.|+
T Consensus       261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~  340 (371)
T PF14664_consen  261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALV  340 (371)
T ss_pred             HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHH
Confidence            666665310                  00                          00   00    12235899999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHH
Q 041252          409 LVIQSGCNPVLKQRSAELLKL  429 (450)
Q Consensus       409 ~ll~s~~~~~~k~~A~~lL~~  429 (450)
                      .+..+..++....+|.-+|.-
T Consensus       341 ~li~~~~d~~l~~KAtlLL~e  361 (371)
T PF14664_consen  341 ELIESSEDSSLSRKATLLLGE  361 (371)
T ss_pred             HHHhcCCCchHHHHHHHHHHH
Confidence            999887677888888877764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.61  E-value=0.00018  Score=70.83  Aligned_cols=51  Identities=25%  Similarity=0.355  Sum_probs=45.1

Q ss_pred             eeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcc
Q 041252           70 FVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTP  121 (450)
Q Consensus        70 ~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~  121 (450)
                      +.|.|++++-++||+-+ +||.|+|+-|++++.+ +.+||.++++++.++++|
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~   52 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE   52 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence            57999999999999876 9999999999999997 678999999988765544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.56  E-value=0.00072  Score=63.31  Aligned_cols=186  Identities=15%  Similarity=0.123  Sum_probs=112.2

Q ss_pred             cCCCHHHHHHHHHHHHHHhccC---CChhhHhhhh-hHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCC
Q 041252          243 NEGSVETKINCTRLIEKLMEEK---DFRPEIVSSH-RLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGA  318 (450)
Q Consensus       243 ~~~~~~~~~~aa~~L~~La~~~---~~~~~~~~~~-g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~  318 (450)
                      .+.+-+.|..|..-|+.+...+   +....++... .++..+...+.+. ...+...|+.++..|+..-.....-.-...
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            4568899999999999997655   2222222221 2344555566654 356788899999988844332222223447


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHhcCChh-hHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCc---hhH
Q 041252          319 VPQLVELLPSLDPDCLQLALCILDALSSLPE-GKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP---EEC  394 (450)
Q Consensus       319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e-~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~---~~~  394 (450)
                      +|.|+..+.+++.-+++.|..+|..++.+-. ....+      ++.+...+.+.++.++..++..|..+....+   ...
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~------~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL------LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH------HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            8899999988888999999999999997643 12111      3355666677889999999999988876665   111


Q ss_pred             HHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252          395 SSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD  436 (450)
Q Consensus       395 ~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~  436 (450)
                      .....-..+++.+...+..+ ++.+|+.|..++..+..++++
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-H
T ss_pred             cccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCH
Confidence            11111134566667777666 899999999999999888653

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.06  Score=53.91  Aligned_cols=238  Identities=17%  Similarity=0.158  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc------hh----hhhccCCCchHH
Q 041252          168 QALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS------ES----KTNLMQPAKVSL  237 (450)
Q Consensus       168 ~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~------~~----k~~i~~~g~i~~  237 (450)
                      ..++.+..++ .-|+.-..+++.++|+.|+.+|+.. +.++.-..+..|..|...+      +.    -..+++.+.++.
T Consensus       103 d~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL  180 (536)
T KOG2734|consen  103 DIIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL  180 (536)
T ss_pred             HHHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence            3555666555 3466667889999999999999986 6778888888888886532      11    235678899999


Q ss_pred             HHHHhcCCCH------HHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCcc-chhHHHHHHHHhc-cChHH
Q 041252          238 LVDMLNEGSV------ETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPN-GILPGLSLLRSIC-LLNEV  309 (450)
Q Consensus       238 Lv~lL~~~~~------~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~-~~~~al~aL~~Ls-~~~~~  309 (450)
                      |+.-+..=+.      ....+...++.|+..-.+.....+.+.|.+.-|+.-+..+...+ -...|...|.-+- ..++|
T Consensus       181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~  260 (536)
T KOG2734|consen  181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN  260 (536)
T ss_pred             HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence            9987763222      33455667788887665555555556677776666444432222 2456666776665 44558


Q ss_pred             HHHHHhcCCHHHHHHhcCC---C------ChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHH
Q 041252          310 RSLVVSIGAVPQLVELLPS---L------DPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYAL  380 (450)
Q Consensus       310 ~~~iv~~G~v~~Lv~lL~~---~------~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~  380 (450)
                      +.......+|..+++-+.-   .      ..+.-++-...|+.+-..++||..+.. +.|++...-+ .+.....+..|+
T Consensus       261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqLm~Lm-lr~Kk~sr~Sal  338 (536)
T KOG2734|consen  261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQLMNLM-LREKKVSRGSAL  338 (536)
T ss_pred             hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHHHHHH-HHHHHHhhhhHH
Confidence            9999999999999998832   1      245667777777777778999999998 6778655444 444555667788


Q ss_pred             HHHHHhcccCch-hHHHHHHhcChHHHHHH
Q 041252          381 SILWSICKIAPE-ECSSAAVDAGLAAKLFL  409 (450)
Q Consensus       381 ~~L~~L~~~~~~-~~~~~~~~~G~i~~L~~  409 (450)
                      ++|-......+. ......++.++...+..
T Consensus       339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~  368 (536)
T KOG2734|consen  339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFP  368 (536)
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHhHHHHHH
Confidence            888877665542 22344556555565553

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.043  Score=52.95  Aligned_cols=269  Identities=13%  Similarity=0.096  Sum_probs=168.4

Q ss_pred             chHHHHHHHHHHHHHHHHcHHH----HHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHH
Q 041252          162 KGQARVQALKELHQIAAAHASA----RKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSL  237 (450)
Q Consensus       162 ~~~~~~~Al~~L~~l~~~~~~~----r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~  237 (450)
                      +..++.-|++.+.-+..+.+.|    -..++.+|..+.++..+... +.++...|+..+..++..+.....|.+......
T Consensus        95 dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-ddeVAkAAiesikrialfpaaleaiFeSellDd  173 (524)
T KOG4413|consen   95 DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-DDEVAKAAIESIKRIALFPAALEAIFESELLDD  173 (524)
T ss_pred             cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcHHHHHHhcccccCCh
Confidence            3344444555555444443322    23456778899999999876 788999999999999999988888887765554


Q ss_pred             HH--HHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHh
Q 041252          238 LV--DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS  315 (450)
Q Consensus       238 Lv--~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~  315 (450)
                      +-  .+--..+.-+|.....++-.+.+.......-....|.+..|..=++...+.-++.+++.....|+..+..+.-+.+
T Consensus       174 lhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ  253 (524)
T KOG4413|consen  174 LHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ  253 (524)
T ss_pred             HHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch
Confidence            33  3333345566777777777776544333333455677777776666544566778999999999988888888889


Q ss_pred             cCCHHHHHHhcCCC--ChhHHHHHHHHHHHhcCC----hhhHHHHhcc-CCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252          316 IGAVPQLVELLPSL--DPDCLQLALCILDALSSL----PEGKLALKDC-ANTIPNTVRLLMRVSEDCTQYALSILWSICK  388 (450)
Q Consensus       316 ~G~v~~Lv~lL~~~--~~~~~~~al~~L~~L~~~----~e~r~~i~~~-~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  388 (450)
                      .|.|+.+-.++...  ++--+-.++.....+-++    +-.-+++++. .-+|....+.+...++..++.|+.+|..+..
T Consensus       254 eglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS  333 (524)
T KOG4413|consen  254 EGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS  333 (524)
T ss_pred             hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC
Confidence            99999999998543  443444444444433332    1112222220 0134555666666788999999999999877


Q ss_pred             cCchhHHHHHHhcCh--HHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          389 IAPEECSSAAVDAGL--AAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       389 ~~~~~~~~~~~~~G~--i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      +..  -+......|-  ...++.-..+.+...-++.+...|..++..
T Consensus       334 nte--GadlllkTgppaaehllarafdqnahakqeaaihaLaaIage  378 (524)
T KOG4413|consen  334 NTE--GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE  378 (524)
T ss_pred             Ccc--hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence            653  2344445553  444444333331223345555566665544

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.42  E-value=0.00035  Score=46.19  Aligned_cols=40  Identities=43%  Similarity=0.551  Sum_probs=36.6

Q ss_pred             hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252          307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS  346 (450)
Q Consensus       307 ~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~  346 (450)
                      ++++..+++.|+++.|+++|.+.+.+++..++++|+||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3588889999999999999998899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.42  E-value=0.019  Score=59.72  Aligned_cols=270  Identities=17%  Similarity=0.129  Sum_probs=170.1

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHH-HHHHHhcCCCchhhhhc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEA-VGVLVNLTLDSESKTNL  229 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~A-l~~L~~Ls~~~~~k~~i  229 (450)
                      .+.+.+.++..+...+..|...+..+..+.  .-..+.+.+.+..|...+....+..-++.+ +....+ .   .+-...
T Consensus       136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~-~---~~Lg~~  209 (569)
T KOG1242|consen  136 LELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAA-Q---GNLGPP  209 (569)
T ss_pred             HHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHH-H---HhcCCC
Confidence            455666677667778888888888887653  345666778888888888765333333311 111111 1   111244


Q ss_pred             cCCCchHHHHHHhc---CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252          230 MQPAKVSLLVDMLN---EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL  306 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~---~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~  306 (450)
                      .++..++.+-.+|.   +....+|..|..+...+...-+.    ..-.-+++.++.-+... ....+.+++..|..++.+
T Consensus       210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~----~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~  284 (569)
T KOG1242|consen  210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA----YAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADC  284 (569)
T ss_pred             CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc----chhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHh
Confidence            56777777777665   34678888887777776432111    01122345555444443 356788999999999877


Q ss_pred             hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHH----------Hhc--------------------
Q 041252          307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLA----------LKD--------------------  356 (450)
Q Consensus       307 ~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~----------i~~--------------------  356 (450)
                      ....-......+||.+.+.|.+..+++++.+..+|..+++.-+|-..          +.+                    
T Consensus       285 ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~  364 (569)
T KOG1242|consen  285 APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAE  364 (569)
T ss_pred             chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeee
Confidence            77777777889999999999999999999999999988864222111          111                    


Q ss_pred             -cCCChHHHHHHHhcC----ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHH-HHH
Q 041252          357 -CANTIPNTVRLLMRV----SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELL-KLC  430 (450)
Q Consensus       357 -~~g~i~~Lv~lL~~~----s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL-~~l  430 (450)
                       .+-.+..++-+|.++    +...++.++.+++|+|..-++.....-.=.-++|-|-..+... .|++|.-|+..| .++
T Consensus       365 V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~  443 (569)
T KOG1242|consen  365 VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VPEVRAVAARALGALL  443 (569)
T ss_pred             ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-ChhHHHHHHHHHHHHH
Confidence             012344455555443    5667788999999999877433211101123556666666666 789998888887 444


Q ss_pred             Hh
Q 041252          431 SL  432 (450)
Q Consensus       431 s~  432 (450)
                      .+
T Consensus       444 e~  445 (569)
T KOG1242|consen  444 ER  445 (569)
T ss_pred             HH
Confidence            33

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.39  E-value=0.0077  Score=65.68  Aligned_cols=223  Identities=14%  Similarity=0.077  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHh--cCCCchhhhhccCCCchHHHHHHhc
Q 041252          166 RVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVN--LTLDSESKTNLMQPAKVSLLVDMLN  243 (450)
Q Consensus       166 ~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~--Ls~~~~~k~~i~~~g~i~~Lv~lL~  243 (450)
                      |..|+.-|..+..-.+=.-..-..-|..|.++++|++.. .+ ....+-.++.  |+.++.++..+++.++-...+.+|.
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a-~E-LrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~  564 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA-RE-LRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD  564 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch-Hh-hhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence            344555444433222212222235588999999998863 33 3445555555  7888888888988877777777777


Q ss_pred             C-C--CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCCH
Q 041252          244 E-G--SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGAV  319 (450)
Q Consensus       244 ~-~--~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v  319 (450)
                      . +  +++-|..|+.+|..+..+-..-++..-+.+.+..=+..|+++.++-.+.-.+-+|..|= ..+++|..=++.++.
T Consensus       565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah  644 (1387)
T KOG1517|consen  565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH  644 (1387)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence            6 3  56888899999999976644333334445566655666666423444555666777774 557788888899999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHhcCC-----hhhHHHHh----------ccCCChH----HHHHHHhcCChHHHHHHH
Q 041252          320 PQLVELLPSLDPDCLQLALCILDALSSL-----PEGKLALK----------DCANTIP----NTVRLLMRVSEDCTQYAL  380 (450)
Q Consensus       320 ~~Lv~lL~~~~~~~~~~al~~L~~L~~~-----~e~r~~i~----------~~~g~i~----~Lv~lL~~~s~~~~e~A~  380 (450)
                      +.|+.+|++.-++++..|+-+|..+-++     ++....+-          ..+..|+    .++.++..+++-++...+
T Consensus       645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~  724 (1387)
T KOG1517|consen  645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV  724 (1387)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence            9999999999999999999999998774     33222220          0012222    566666777777666666


Q ss_pred             HHHHHhcccC
Q 041252          381 SILWSICKIA  390 (450)
Q Consensus       381 ~~L~~L~~~~  390 (450)
                      -+|..+....
T Consensus       725 v~ls~~~~g~  734 (1387)
T KOG1517|consen  725 VALSHFVVGY  734 (1387)
T ss_pred             HHHHHHHHhh
Confidence            6666555433

>TIGR02270 conserved hypothetical protein

Probab=97.38  E-value=0.014  Score=59.39  Aligned_cols=152  Identities=14%  Similarity=-0.038  Sum_probs=101.9

Q ss_pred             cHHHHHHHhhc-cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          150 RASELLGTLKK-VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       150 ~i~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      .++.++..|.. .+.+++..++..+...  +++         .++..|+..|... +..++..++.+|..          
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~---------~~~~~L~~~L~d~-~~~vr~aaa~ALg~----------  112 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQ--EDA---------LDLRSVLAVLQAG-PEGLCAGIQAALGW----------  112 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhcc--CCh---------HHHHHHHHHhcCC-CHHHHHHHHHHHhc----------
Confidence            35667778854 4455555444444311  111         1278888888764 56688888888763          


Q ss_pred             ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252          229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE  308 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~  308 (450)
                      +...+..+.|+.+|++.++.++..+..++...-            ....+.|..+|++. ++.+...|+++|..|..   
T Consensus       113 i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~-d~~Vra~A~raLG~l~~---  176 (410)
T TIGR02270       113 LGGRQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHE-DALVRAAALRALGELPR---  176 (410)
T ss_pred             CCchHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCC-CHHHHHHHHHHHHhhcc---
Confidence            334667888889998888888877765555421            11236777777765 67888888888877642   


Q ss_pred             HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252          309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS  346 (450)
Q Consensus       309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~  346 (450)
                             ..+++.|...+.+.++.++..|+.+|..+-.
T Consensus       177 -------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~  207 (410)
T TIGR02270       177 -------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS  207 (410)
T ss_pred             -------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence                   3455667777888889999999988877644

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.0001  Score=69.29  Aligned_cols=48  Identities=17%  Similarity=0.126  Sum_probs=43.3

Q ss_pred             eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCC
Q 041252           70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDD  117 (450)
Q Consensus        70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~  117 (450)
                      -.|+||++-|.-||.+.|+|.||.-||+--...+..+||+|+.+++++
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            459999999999999999999999999998777678899999998653

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.25  E-value=0.00088  Score=52.41  Aligned_cols=87  Identities=16%  Similarity=0.240  Sum_probs=66.4

Q ss_pred             hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhh
Q 041252          193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVS  272 (450)
Q Consensus       193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~  272 (450)
                      ||.|++.|....+..++..|+.+|..+.          ...+++.|+.+++++++.+|..|+.+|..+.           
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG-----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence            5788998843447899999999998432          2356999999999999999999999998772           


Q ss_pred             hhhHHHHHHHHHhcCCCccchhHHHHHH
Q 041252          273 SHRLLIGLMRLVKNKRHPNGILPGLSLL  300 (450)
Q Consensus       273 ~~g~l~~Lv~lL~~~~~~~~~~~al~aL  300 (450)
                      ....++.|.+++.++.+..++..|+.+|
T Consensus        60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   60 DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence            3446789999988764444567777766

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.23  E-value=0.002  Score=50.36  Aligned_cols=86  Identities=22%  Similarity=0.309  Sum_probs=67.3

Q ss_pred             hHHHHHHh-cCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHH
Q 041252          235 VSLLVDML-NEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLV  313 (450)
Q Consensus       235 i~~Lv~lL-~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~i  313 (450)
                      |+.|++.| +++++.+|..++.+|..+           .....++.|+.+++++ ++.++..++.+|..+.         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-----------~~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL-----------GDPEAIPALIELLKDE-DPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC-----------THHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc-----------CCHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC---------
Confidence            57899999 778999999998888843           1235689999999875 7889999999999883         


Q ss_pred             HhcCCHHHHHHhcCCC-ChhHHHHHHHHHH
Q 041252          314 VSIGAVPQLVELLPSL-DPDCLQLALCILD  342 (450)
Q Consensus       314 v~~G~v~~Lv~lL~~~-~~~~~~~al~~L~  342 (450)
                       +..+++.|.+++.+. +..++..|+.+|.
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             334889999999765 4556888888774

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.23  E-value=0.00036  Score=53.78  Aligned_cols=46  Identities=28%  Similarity=0.471  Sum_probs=35.6

Q ss_pred             eeCcCCCCCCCC-CeeC-CCCCcccHHHHHHHHhc--CCCCCCCcCCcCC
Q 041252           70 FVCPISLEPMQD-PVTL-CTGQTYERSNILKWFSL--GRYTCPTTMQELW  115 (450)
Q Consensus        70 ~~Cpi~~~~m~d-Pv~~-~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~  115 (450)
                      -.||.|+..=.| |++. .|||.|-..||.+|++.  +...||+||++..
T Consensus        33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            456766665555 7654 69999999999999985  3578999998754

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.22  E-value=0.00013  Score=64.18  Aligned_cols=44  Identities=16%  Similarity=0.329  Sum_probs=38.7

Q ss_pred             eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252           70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL  114 (450)
Q Consensus        70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l  114 (450)
                      |.|-||.+-++.||++.|||.||-.|-.+-+.. ...|-+|+...
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence            999999999999999999999999997776665 47788888654

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.22  E-value=0.0015  Score=61.04  Aligned_cols=181  Identities=20%  Similarity=0.181  Sum_probs=108.5

Q ss_pred             hccchHHHHHHHHHHHHHHHHc--HHHHHHHHhh--CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCc
Q 041252          159 KKVKGQARVQALKELHQIAAAH--ASARKTMVDE--GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAK  234 (450)
Q Consensus       159 ~~~~~~~~~~Al~~L~~l~~~~--~~~r~~i~~~--G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~  234 (450)
                      ++.+.+.|..|+..|+.+...+  ......+.+.  ..+..+...+.+. ...+...|+.++..++..-...-.-.-...
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            4567889999999999999877  3333433332  3345555555543 346788888888887754322211112456


Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhH-HHHHHHHHhcCCCccchhHHHHHHHHhcc-ChHHHHH
Q 041252          235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRL-LIGLMRLVKNKRHPNGILPGLSLLRSICL-LNEVRSL  312 (450)
Q Consensus       235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~-l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~~~~~~  312 (450)
                      ++.|++.+.++..-+++.|..+|..+...-..      ...+ ++.+.....++ ++.++..++..|..+.. ++.....
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~------~~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSY------SPKILLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCc------HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhh
Confidence            89999999988899999999999999754321      1122 34555555555 68888888888887763 3311111


Q ss_pred             HHh----cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252          313 VVS----IGAVPQLVELLPSLDPDCLQLALCILDALSSL  347 (450)
Q Consensus       313 iv~----~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~  347 (450)
                      +-.    ...++.+...+.+.++++++.|-.++..+...
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            111    34677888899999999999999999999765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.00023  Score=66.90  Aligned_cols=47  Identities=23%  Similarity=0.305  Sum_probs=41.8

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL  114 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l  114 (450)
                      .+|  |.|-||.+.+.+||++.|||+||..|-.+-++. ...|++|.+..
T Consensus       239 ~~P--f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t  285 (313)
T KOG1813|consen  239 LLP--FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT  285 (313)
T ss_pred             cCC--ccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccc
Confidence            555  899999999999999999999999998888886 57799998764

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.18  E-value=0.0047  Score=53.89  Aligned_cols=128  Identities=15%  Similarity=0.128  Sum_probs=98.2

Q ss_pred             hhhhHHHHHHHHHhcCCC-----ccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCC--ChhHHHHHHHHHHHh
Q 041252          272 SSHRLLIGLMRLVKNKRH-----PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSL--DPDCLQLALCILDAL  344 (450)
Q Consensus       272 ~~~g~l~~Lv~lL~~~~~-----~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~--~~~~~~~al~~L~~L  344 (450)
                      .+.+++..|++++.++..     .+....++.++..|-.++-.-+...+.-.|...+..+...  +..+...|+.+|.++
T Consensus         8 I~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~   87 (160)
T PF11841_consen    8 ISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESI   87 (160)
T ss_pred             HhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHH
Confidence            345668999999998642     2455677888888876665556666666777777777443  689999999999999


Q ss_pred             cCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHH
Q 041252          345 SSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAV  399 (450)
Q Consensus       345 ~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~  399 (450)
                      ..++......+..+=.++.|+..|...++..+.+|++.+-+|...+++..++++.
T Consensus        88 Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~  142 (160)
T PF11841_consen   88 VLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA  142 (160)
T ss_pred             HhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            9887775555554678999999999999999999999999998887765444443

>PF04641 Rtf2: Rtf2 RING-finger

Probab=97.16  E-value=0.00042  Score=66.33  Aligned_cols=53  Identities=11%  Similarity=0.305  Sum_probs=43.2

Q ss_pred             CCCeeeCcCCCCCCCC--Ce--eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCc
Q 041252           66 IPSVFVCPISLEPMQD--PV--TLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT  120 (450)
Q Consensus        66 ~p~~~~Cpi~~~~m~d--Pv--~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~  120 (450)
                      -...|.||||+..|..  +.  +.+|||+|+..+|.+--  ....||.|+.+|...+++
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI  166 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII  166 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence            4567999999999964  33  45899999999999983  356799999999887665

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.12  E-value=0.017  Score=59.78  Aligned_cols=261  Identities=19%  Similarity=0.179  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHcHHHHHHHHhhCChHHHHhhh---------CCCCChhhHHHHHHHHHh-cCCCchhhhhccCCCchHHHH
Q 041252          170 LKELHQIAAAHASARKTMVDEGGVALISSLL---------GPFTSHAVGSEAVGVLVN-LTLDSESKTNLMQPAKVSLLV  239 (450)
Q Consensus       170 l~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL---------~~~~~~~v~~~Al~~L~~-Ls~~~~~k~~i~~~g~i~~Lv  239 (450)
                      |.+|+.+.. ++.+-..+....++..|...-         ....+..+..+|+..|+| +-.++..|..+.+.|....++
T Consensus         2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            455665553 344555555555566655543         222366889999999999 455667888889999999999


Q ss_pred             HHhcCC-----CHHHHHHHHHHHHHHh-ccCCChhhHhhhhhHHHHHHHHHhc----C----C--------CccchhHHH
Q 041252          240 DMLNEG-----SVETKINCTRLIEKLM-EEKDFRPEIVSSHRLLIGLMRLVKN----K----R--------HPNGILPGL  297 (450)
Q Consensus       240 ~lL~~~-----~~~~~~~aa~~L~~La-~~~~~~~~~~~~~g~l~~Lv~lL~~----~----~--------~~~~~~~al  297 (450)
                      ..|+..     +.+..--..++|+-++ ...+.+..++.+.+++..++..|..    .    .        +......++
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            999876     6788888888888775 3455666777777777777776542    1    0        112244788


Q ss_pred             HHHHHhccChHHHHHHHhcCCHHHHHHhcCC---------CChhHHHHHHHHHHHhcCC-hhh-------HHHHh---cc
Q 041252          298 SLLRSICLLNEVRSLVVSIGAVPQLVELLPS---------LDPDCLQLALCILDALSSL-PEG-------KLALK---DC  357 (450)
Q Consensus       298 ~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~---------~~~~~~~~al~~L~~L~~~-~e~-------r~~i~---~~  357 (450)
                      .+|+|+..+-.....--+.+.++.|+.++..         ........++.+|.|+-.. ...       ...+.   ..
T Consensus       161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~  240 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN  240 (446)
T ss_pred             HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence            8999997443222111224455555555321         1245677777777777321 111       00010   11


Q ss_pred             CCChHHHHHHHhcC----C----hHHHHHHHHHHHHhcccCchhHHHHHH----------------hcChHHHHHHHHHc
Q 041252          358 ANTIPNTVRLLMRV----S----EDCTQYALSILWSICKIAPEECSSAAV----------------DAGLAAKLFLVIQS  413 (450)
Q Consensus       358 ~g~i~~Lv~lL~~~----s----~~~~e~A~~~L~~L~~~~~~~~~~~~~----------------~~G~i~~L~~ll~s  413 (450)
                      ...+..|+++|...    .    ...-..-+.+|..++..+. ..++.+.                ....-..|+.++.+
T Consensus       241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~-~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~  319 (446)
T PF10165_consen  241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR-EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS  319 (446)
T ss_pred             hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH-HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence            23566777776542    1    1233445566666666553 2222221                24566778999988


Q ss_pred             CCCHHHHHHHHHHHHHHHhh
Q 041252          414 GCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       414 ~~~~~~k~~A~~lL~~ls~~  433 (450)
                      .. +.+|..++.+|..++..
T Consensus       320 ~~-~~~k~~vaellf~Lc~~  338 (446)
T PF10165_consen  320 PD-PQLKDAVAELLFVLCKE  338 (446)
T ss_pred             CC-chHHHHHHHHHHHHHhh
Confidence            74 89999999999887654

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00031  Score=67.75  Aligned_cols=65  Identities=22%  Similarity=0.367  Sum_probs=49.4

Q ss_pred             CCCcchHHHHHhhhccC-CCCeeeCcCCCCCCCCC-------------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252           49 GERLDLKKMIAELDLAE-IPSVFVCPISLEPMQDP-------------VTLCTGQTYERSNILKWFSLGRYTCPTTMQEL  114 (450)
Q Consensus        49 ~~~~~~~~~~~~~~~~~-~p~~~~Cpi~~~~m~dP-------------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l  114 (450)
                      +.-.||.++.+.....+ -.++-+|-||.+-|-+|             =-++|||-+--+|+..|+++ ..+||.|+.++
T Consensus       266 r~~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~  344 (491)
T COG5243         266 RATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV  344 (491)
T ss_pred             HHhhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence            34456776655433323 34678999999885543             57899999999999999998 79999999884

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.06  E-value=0.083  Score=54.67  Aligned_cols=229  Identities=17%  Similarity=0.152  Sum_probs=149.1

Q ss_pred             cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCC----CChhhHHHHHHHHHhcCC-CchhhhhccC-CCc
Q 041252          161 VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPF----TSHAVGSEAVGVLVNLTL-DSESKTNLMQ-PAK  234 (450)
Q Consensus       161 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~----~~~~v~~~Al~~L~~Ls~-~~~~k~~i~~-~g~  234 (450)
                      .+..+...|+++|.|+...++..|..+++.|+.+.++..|+..    .+.++.-....+|..++. ..+.+..+++ .++
T Consensus        44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~  123 (446)
T PF10165_consen   44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHG  123 (446)
T ss_pred             CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Confidence            3567889999999999999999999999999999999999764    246777778888877654 4466666665 578


Q ss_pred             hHHHHHHhcC-----------------CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC--------CC
Q 041252          235 VSLLVDMLNE-----------------GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK--------RH  289 (450)
Q Consensus       235 i~~Lv~lL~~-----------------~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~--------~~  289 (450)
                      +..++..|..                 .+.+....+.++++|+......... -.....++.|+.++..-        ..
T Consensus       124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l  202 (446)
T PF10165_consen  124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPL  202 (446)
T ss_pred             HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence            8888877631                 1233455667778888543322211 01233445555544321        11


Q ss_pred             ccchhHHHHHHHHhccChHHHHH--------------HHhcCCHHHHHHhcCC----C----ChhHHHHHHHHHHHhcCC
Q 041252          290 PNGILPGLSLLRSICLLNEVRSL--------------VVSIGAVPQLVELLPS----L----DPDCLQLALCILDALSSL  347 (450)
Q Consensus       290 ~~~~~~al~aL~~Ls~~~~~~~~--------------iv~~G~v~~Lv~lL~~----~----~~~~~~~al~~L~~L~~~  347 (450)
                      ......+..+|.|+-..  ....              -....++..|+.+|..    .    -.+.....+.+|..++..
T Consensus       203 ~~~~~~~in~L~nlpl~--~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~  280 (446)
T PF10165_consen  203 DPPHSHAINALLNLPLE--CLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARA  280 (446)
T ss_pred             hhhHHHHHHHHhCCChH--HHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHh
Confidence            22345667777777311  1111              1123356677777732    1    125667778888888866


Q ss_pred             -hhhHHHHhc---------------cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCch
Q 041252          348 -PEGKLALKD---------------CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPE  392 (450)
Q Consensus       348 -~e~r~~i~~---------------~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~  392 (450)
                       ...|+.+..               ....-..|++++.+..+.++..+...|+.||..+.+
T Consensus       281 ~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~  341 (446)
T PF10165_consen  281 AREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDAS  341 (446)
T ss_pred             cHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHH
Confidence             555555543               123566789999888899999999999999987653

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.00026  Score=75.02  Aligned_cols=46  Identities=35%  Similarity=0.612  Sum_probs=41.4

Q ss_pred             CeeeCcCCCCCCCC-----CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252           68 SVFVCPISLEPMQD-----PVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL  114 (450)
Q Consensus        68 ~~~~Cpi~~~~m~d-----Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l  114 (450)
                      .+-.|+||.|.|..     |-.++|||.|...|+.+|+++ ..+||.|+..+
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~  340 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL  340 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence            35689999999999     778999999999999999998 78999999743

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.02  E-value=0.001  Score=43.89  Aligned_cols=39  Identities=18%  Similarity=0.286  Sum_probs=35.9

Q ss_pred             chhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 041252          223 SESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLM  261 (450)
Q Consensus       223 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La  261 (450)
                      ++++..+.+.|+++.|+.+|.+++.+++..++++|++|+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            357888899999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>TIGR02270 conserved hypothetical protein

Probab=96.98  E-value=0.022  Score=58.04  Aligned_cols=151  Identities=17%  Similarity=0.079  Sum_probs=107.5

Q ss_pred             ChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh
Q 041252          192 GVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV  271 (450)
Q Consensus       192 ~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~  271 (450)
                      +++.++..|....+.++...++.++.  ..++        ..++..|+..|...+..++..++.+|..+           
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i-----------  113 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALL--AQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWL-----------  113 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHh--ccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC-----------
Confidence            47888888854334555554444432  2211        22489999999988999999998888754           


Q ss_pred             hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhH
Q 041252          272 SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGK  351 (450)
Q Consensus       272 ~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r  351 (450)
                      ......+.|+.+|+++ ++.++..++.++..           ......+.|..+|.+.++.++..|+.+|..+..     
T Consensus       114 ~~~~a~~~L~~~L~~~-~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----  176 (410)
T TIGR02270       114 GGRQAEPWLEPLLAAS-EPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR-----  176 (410)
T ss_pred             CchHHHHHHHHHhcCC-ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----
Confidence            2233457788888776 68788777766655           112345789999999999999999999988753     


Q ss_pred             HHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252          352 LALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI  386 (450)
Q Consensus       352 ~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  386 (450)
                            ..+++.|...+.+.++.++..|+..|..+
T Consensus       177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~l  205 (410)
T TIGR02270       177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLA  205 (410)
T ss_pred             ------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence                  45666777777777888888888777554

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.00047  Score=67.34  Aligned_cols=46  Identities=22%  Similarity=0.459  Sum_probs=39.8

Q ss_pred             eeCcCCCCCCCC--Ce-eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           70 FVCPISLEPMQD--PV-TLCTGQTYERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        70 ~~Cpi~~~~m~d--Pv-~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      ++|-||+|-+.+  -+ +++|+|.|=..||..|+.+...+||+|++...
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence            699999999984  44 68999999999999999986567999998653

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=0.00079  Score=61.50  Aligned_cols=54  Identities=15%  Similarity=0.316  Sum_probs=46.9

Q ss_pred             CCeeeCcCCCCCCCCCe----eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcc
Q 041252           67 PSVFVCPISLEPMQDPV----TLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTP  121 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dPv----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~  121 (450)
                      ...|+||+|.+.+.+.+    +-+|||.|+..|.++.+.. ...||+|+.++.+.++++
T Consensus       219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG  276 (303)
T ss_pred             ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence            35799999999999854    3479999999999999885 788999999999988876

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.26  Score=52.30  Aligned_cols=192  Identities=12%  Similarity=0.090  Sum_probs=109.8

Q ss_pred             hhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh
Q 041252          147 VQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK  226 (450)
Q Consensus       147 ~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k  226 (450)
                      ..+.++.|+..|..+++.++..|+..+..|+..+|.|--.+     -|.+..+|..+.+.-+.-..+.+..+|+--+.--
T Consensus       179 lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL  253 (877)
T KOG1059|consen  179 LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL  253 (877)
T ss_pred             HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchh
Confidence            34556666666666666666666666666666666553332     2555666655444455555555555555433210


Q ss_pred             hhccCCCchHHHHHHhcCCC-HHHHHHHHHHHH--HHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 041252          227 TNLMQPAKVSLLVDMLNEGS-VETKINCTRLIE--KLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI  303 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~~-~~~~~~aa~~L~--~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L  303 (450)
                          ....+++|..++.+.+ ..+.-.+..++-  +++++......  ...-++..|-.++.+. +++.+--++-|++.+
T Consensus       254 ----gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~a--siqLCvqKLr~fieds-DqNLKYlgLlam~KI  326 (877)
T KOG1059|consen  254 ----GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSA--SIQLCVQKLRIFIEDS-DQNLKYLGLLAMSKI  326 (877)
T ss_pred             ----hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHH--HHHHHHHHHhhhhhcC-CccHHHHHHHHHHHH
Confidence                1123677777776542 223333333322  22222111111  1122455555556664 788888888898888


Q ss_pred             c-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhc
Q 041252          304 C-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKD  356 (450)
Q Consensus       304 s-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~  356 (450)
                      . .|+.....-     -+.++.+|.+.|+.++-.|+..|.-+.+ .+|-.+|+.
T Consensus       327 ~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eIVk  374 (877)
T KOG1059|consen  327 LKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEIVK  374 (877)
T ss_pred             hhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHHHH
Confidence            8 455432221     2467889999999999999999999876 344444443

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.83  E-value=0.0063  Score=49.09  Aligned_cols=64  Identities=20%  Similarity=0.327  Sum_probs=55.4

Q ss_pred             hhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCC-hhhHHHHhc
Q 041252          293 ILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELL--PSLDPDCLQLALCILDALSSL-PEGKLALKD  356 (450)
Q Consensus       293 ~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL--~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~  356 (450)
                      +...+++|.||| .+..++..+.+.|++|.++...  ++.+|-++|.|+.++++|+.. ++|+..+.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            556788999999 6788999999999999999986  556899999999999999965 888888865

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.83  E-value=0.00054  Score=68.91  Aligned_cols=50  Identities=20%  Similarity=0.318  Sum_probs=43.2

Q ss_pred             CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc----CCCCCCCcCCcCCCC
Q 041252           68 SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL----GRYTCPTTMQELWDD  117 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~~~  117 (450)
                      ++..|-+|.++-.||+...|.|+|||-||.++...    ++.+||.|...|+-+
T Consensus       535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            35789999999999999999999999999998752    357899998887654

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.00094  Score=62.15  Aligned_cols=48  Identities=25%  Similarity=0.297  Sum_probs=40.1

Q ss_pred             CeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHh-cCCCCCCCcCCcCC
Q 041252           68 SVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFS-LGRYTCPTTMQELW  115 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~-~~~~~cP~~~~~l~  115 (450)
                      +.-.||+|++.-.-|.+.. |||.||.-||..-+. ....+||.|+.+..
T Consensus       238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            3578999999999999865 999999999999755 23689999987653

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.00098  Score=60.89  Aligned_cols=43  Identities=28%  Similarity=0.539  Sum_probs=37.0

Q ss_pred             hhhccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc
Q 041252           60 ELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL  102 (450)
Q Consensus        60 ~~~~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~  102 (450)
                      +|-...+-+.-+|.+|.+.++|||+.++||.|||.||.+++-.
T Consensus        34 RLgrDsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   34 RLGRDSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA   76 (303)
T ss_pred             hhcccccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence            4445566666789999999999999999999999999999764

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=96.76  E-value=0.0015  Score=60.53  Aligned_cols=53  Identities=25%  Similarity=0.334  Sum_probs=42.4

Q ss_pred             hhccCCCCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcC-CCCCCCcCCc
Q 041252           61 LDLAEIPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLG-RYTCPTTMQE  113 (450)
Q Consensus        61 ~~~~~~p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~-~~~cP~~~~~  113 (450)
                      ++..+.--.++|||+.....+|++- .|||.|+|..|...+... ...||+-+..
T Consensus       168 ~~i~~e~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  168 ELIGQEVFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             HHhhhhhhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            3444555578999999999999975 599999999999998742 3459998765

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.64  E-value=0.38  Score=47.65  Aligned_cols=189  Identities=26%  Similarity=0.280  Sum_probs=124.7

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      ..+..++..+.+.+..+|..|...+..+...           -+++.+..+|... +..++..|+.+|..+         
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~-~~~vr~~a~~aLg~~---------  101 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDE-DPRVRDAAADALGEL---------  101 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCC-CHHHHHHHHHHHHcc---------
Confidence            3567788888887777888888775544321           2478899999876 678888888866543         


Q ss_pred             ccCCCchHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252          229 LMQPAKVSLLVDMLN-EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN  307 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~  307 (450)
                       ..+.+++.++..|. +.+..+|..|+.+|..+-..           ..+.+|+..+.+..+ ..   ++..+  .....
T Consensus       102 -~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~-~~---a~~~~--~~~~~  163 (335)
T COG1413         102 -GDPEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDS-GS---AAAAL--DAALL  163 (335)
T ss_pred             -CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchh-hh---hhhhc--cchHH
Confidence             34667999999999 58999999999999988322           125778887776531 11   11111  00000


Q ss_pred             HHHHHH-------HhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHH
Q 041252          308 EVRSLV-------VSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYAL  380 (450)
Q Consensus       308 ~~~~~i-------v~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~  380 (450)
                      ..|...       .+.-.++.+.+++.+.+..++..|..+|..+....         ..+.+.++..+...+..++..++
T Consensus       164 ~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~  234 (335)
T COG1413         164 DVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAAL  234 (335)
T ss_pred             HHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHH
Confidence            122222       22347788999998888899999999999887654         13445566666666666665555


Q ss_pred             HHHHH
Q 041252          381 SILWS  385 (450)
Q Consensus       381 ~~L~~  385 (450)
                      .+|..
T Consensus       235 ~~l~~  239 (335)
T COG1413         235 LALGE  239 (335)
T ss_pred             HHhcc
Confidence            55443

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.34  Score=47.01  Aligned_cols=244  Identities=15%  Similarity=0.147  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhc
Q 041252          164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLN  243 (450)
Q Consensus       164 ~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~  243 (450)
                      -+|...+.-+-.+.+-++..-...-..|.+..|..=|+...|.-++.+.+.....|...+..++.+.+.|.|..+..++.
T Consensus       186 iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIs  265 (524)
T KOG4413|consen  186 IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIIS  265 (524)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhh
Confidence            35666677777777777777777888899999888777644677888899999999998899999999999999999986


Q ss_pred             CC--CHHHHHHHHH----HHHHHhccCCChhhHhhh-hhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhc
Q 041252          244 EG--SVETKINCTR----LIEKLMEEKDFRPEIVSS-HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSI  316 (450)
Q Consensus       244 ~~--~~~~~~~aa~----~L~~La~~~~~~~~~~~~-~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~  316 (450)
                      ..  ++-.+-.+.-    .+.+++-.+-....+... ..++...+.++... ++..+..|..++..|.++.+.+..+..-
T Consensus       266 GadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteGadlllkT  344 (524)
T KOG4413|consen  266 GADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEGADLLLKT  344 (524)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcchhHHHhcc
Confidence            33  3433333322    222222211111112111 23566667777765 7899999999999999998888777776


Q ss_pred             CC--HHHHHHhc-CCCChhHHHHHHHHHHHhcCC----hh----h------HHHHhccC------CChHHHHHHHhcCCh
Q 041252          317 GA--VPQLVELL-PSLDPDCLQLALCILDALSSL----PE----G------KLALKDCA------NTIPNTVRLLMRVSE  373 (450)
Q Consensus       317 G~--v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~----~e----~------r~~i~~~~------g~i~~Lv~lL~~~s~  373 (450)
                      |-  ...++.-. ......-++.++.+|.++++.    ++    +      |..+.+.+      .-...+..+++..++
T Consensus       345 gppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfp  424 (524)
T KOG4413|consen  345 GPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFP  424 (524)
T ss_pred             CChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCCh
Confidence            63  33333333 333345677788888888863    11    1      12222200      123445556666678


Q ss_pred             HHHHHHHHHHHHhcccCchhHHHHHH-hcChHHHHHHH
Q 041252          374 DCTQYALSILWSICKIAPEECSSAAV-DAGLAAKLFLV  410 (450)
Q Consensus       374 ~~~e~A~~~L~~L~~~~~~~~~~~~~-~~G~i~~L~~l  410 (450)
                      +..-.|..++.+++....  +..++. ..|.+..+.+-
T Consensus       425 EihcAalktfTAiaaqPW--alkeifakeefieiVtDa  460 (524)
T KOG4413|consen  425 EIHCAALKTFTAIAAQPW--ALKEIFAKEEFIEIVTDA  460 (524)
T ss_pred             hhHHHHHHHHHHHHcCcH--HHHHHhcCccceeeeccc
Confidence            888999999999987654  344555 45666555543

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.0014  Score=64.27  Aligned_cols=44  Identities=30%  Similarity=0.641  Sum_probs=39.3

Q ss_pred             CeeeCcCCCCCCCC---CeeCCCCCcccHHHHHHHHhcCC--CCCCCcC
Q 041252           68 SVFVCPISLEPMQD---PVTLCTGQTYERSNILKWFSLGR--YTCPTTM  111 (450)
Q Consensus        68 ~~~~Cpi~~~~m~d---Pv~~~~g~ty~r~~I~~~~~~~~--~~cP~~~  111 (450)
                      +-|+|||.++--.|   |+.+.|||.-++.+|.+-...|.  +.||.|-
T Consensus       333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP  381 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP  381 (394)
T ss_pred             ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence            35899999998876   99999999999999999999876  7899994

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.0087  Score=62.38  Aligned_cols=253  Identities=17%  Similarity=0.122  Sum_probs=150.5

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC------Cch
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL------DSE  224 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~------~~~  224 (450)
                      +..+.....+.+..+|..|++.|..+.....-.+.      .....+..++.. +..++..|+.++.-...      ..+
T Consensus       200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e  272 (823)
T KOG2259|consen  200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERE  272 (823)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccch
Confidence            33456666667777888888888877653221111      135566777764 67899888777765432      111


Q ss_pred             hhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHh-
Q 041252          225 SKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI-  303 (450)
Q Consensus       225 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L-  303 (450)
                      +-+.=..-.+...+...+...+..+|..|+.+|..+-...+   +++ ..-+=..+++-++.+.  ...+.......+- 
T Consensus       273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe---e~i-~QTLdKKlms~lRRkr--~ahkrpk~l~s~Ge  346 (823)
T KOG2259|consen  273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE---EII-QQTLDKKLMSRLRRKR--TAHKRPKALYSSGE  346 (823)
T ss_pred             hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH---HHH-HHHHHHHHhhhhhhhh--hcccchHHHHhcCC
Confidence            11111123567888888988899999999999887732221   121 1111233443222210  0111111122222 


Q ss_pred             ---------c----cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhc
Q 041252          304 ---------C----LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMR  370 (450)
Q Consensus       304 ---------s----~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~  370 (450)
                               .    ..++.-..++..|+-.++|.=|.+.-.+++++|+..+..|+.+.   ..+..  .++.-||..+..
T Consensus       347 wSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss---P~FA~--~aldfLvDMfND  421 (823)
T KOG2259|consen  347 WSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS---PGFAV--RALDFLVDMFND  421 (823)
T ss_pred             cccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC---CCcHH--HHHHHHHHHhcc
Confidence                     0    11223456788899999999998877899999999999998642   12222  356688888887


Q ss_pred             CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041252          371 VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL  429 (450)
Q Consensus       371 ~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~  429 (450)
                      ..+.++..|+.+|..++.+-       .++..-++.++.-|... ++.+|++...+|+.
T Consensus       422 E~~~VRL~ai~aL~~Is~~l-------~i~eeql~~il~~L~D~-s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  422 EIEVVRLKAIFALTMISVHL-------AIREEQLRQILESLEDR-SVDVREALRELLKN  472 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-------eecHHHHHHHHHHHHhc-CHHHHHHHHHHHHh
Confidence            77899999999999887753       12222334444444443 45555555555544

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.011  Score=60.36  Aligned_cols=186  Identities=11%  Similarity=0.070  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhhhccCCCchHHHHHHhcCC
Q 041252          167 VQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLMQPAKVSLLVDMLNEG  245 (450)
Q Consensus       167 ~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~  245 (450)
                      ..++..|..+++.=...|.-+.....+++|+.+|+.. +..+...+...++|+...- .-+..+.+.|.|..|+.++.+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            4456667777765556788888888999999999764 4556667788888866543 4466788899999999999988


Q ss_pred             CHHHHHHHHHHHHHHhccCCCh--hhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh-HH---HHHHHhc---
Q 041252          246 SVETKINCTRLIEKLMEEKDFR--PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN-EV---RSLVVSI---  316 (450)
Q Consensus       246 ~~~~~~~aa~~L~~La~~~~~~--~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~-~~---~~~iv~~---  316 (450)
                      +...|.+..|.|+.|.-+.+..  -+.+...| +..++.+.+++ ...+++..+..|+|+..+. .|   +.-...+   
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig-~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~  563 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIG-VEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR  563 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcC-HHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence            9999999999999997443322  12233334 67888888776 5789999999999997422 11   1111111   


Q ss_pred             C-CHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHh
Q 041252          317 G-AVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALK  355 (450)
Q Consensus       317 G-~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~  355 (450)
                      . ....|++.+++.++-..+..+.+|-+++.++++...++
T Consensus       564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V  603 (743)
T COG5369         564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIV  603 (743)
T ss_pred             HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHH
Confidence            1 23456777777777777777888888887766655444

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.0019  Score=59.28  Aligned_cols=50  Identities=18%  Similarity=0.376  Sum_probs=42.1

Q ss_pred             CeeeCcCCCCCCCCCe----eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCc
Q 041252           68 SVFVCPISLEPMQDPV----TLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT  120 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~  120 (450)
                      ..|+|||++-.|.+-.    +-+|||.|.-+++.+.   +...|++|+..+..++.+
T Consensus       110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~dvI  163 (293)
T KOG3113|consen  110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQEDDVI  163 (293)
T ss_pred             ceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCcccccCeE
Confidence            4699999999999865    4589999999998887   357899999999876654

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.0017  Score=61.18  Aligned_cols=47  Identities=17%  Similarity=0.325  Sum_probs=38.1

Q ss_pred             eeCcCCCCCCC--CCe-eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           70 FVCPISLEPMQ--DPV-TLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        70 ~~Cpi~~~~m~--dPv-~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      .-|-||..-+.  |-+ ++||.|.|-+.||++|+..-...||+|+.++++
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            46999986554  444 689999999999999998656779999987754

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.48  E-value=0.94  Score=48.48  Aligned_cols=233  Identities=17%  Similarity=0.133  Sum_probs=133.6

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHH--HHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhh
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHAS--ARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKT  227 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~--~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~  227 (450)
                      +..++..|++.+..+|.+|+..+..++.--..  --+.+...|.|  |-.-|... ..++.-..+++|..+...- -.|.
T Consensus       801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgee-ypEvLgsILgAikaI~nvigm~km  877 (1172)
T KOG0213|consen  801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEE-YPEVLGSILGAIKAIVNVIGMTKM  877 (1172)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcc-cHHHHHHHHHHHHHHHHhcccccc
Confidence            34556667888889999999998887753111  11344555643  55677654 6677666555555433211 1111


Q ss_pred             hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc---
Q 041252          228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC---  304 (450)
Q Consensus       228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls---  304 (450)
                      .=--.+.+|.|.-+|++....+++++..++..++.......-.-.=-.+.-.|+.+|+.- ..+.+.+|...+..++   
T Consensus       878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah-kK~iRRaa~nTfG~IakaI  956 (1172)
T KOG0213|consen  878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH-KKEIRRAAVNTFGYIAKAI  956 (1172)
T ss_pred             CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHhc
Confidence            111257899999999999999999999999999854432111100012345666777653 2445555555444443   


Q ss_pred             cChH---------------HH------HHHH-h-cC---CHHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHHHhc
Q 041252          305 LLNE---------------VR------SLVV-S-IG---AVPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLALKD  356 (450)
Q Consensus       305 ~~~~---------------~~------~~iv-~-~G---~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~i~~  356 (450)
                      +..+               ||      ..+| + .|   ++|+|+.--+..+..++.-.+++|..+-..  ..++.-+..
T Consensus       957 GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiya 1036 (1172)
T KOG0213|consen  957 GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYA 1036 (1172)
T ss_pred             CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHH
Confidence            1111               11      1233 2 23   344444444555677888888888877654  334444432


Q ss_pred             cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252          357 CANTIPNTVRLLMRVSEDCTQYALSILWSICKIA  390 (450)
Q Consensus       357 ~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  390 (450)
                         ..|.|-..|...+..-++.|+.++..++...
T Consensus      1037 ---v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1037 ---VTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred             ---hhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence               4566666666655566666666666665443

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.39  E-value=0.08  Score=46.28  Aligned_cols=128  Identities=17%  Similarity=0.207  Sum_probs=98.5

Q ss_pred             hccCCCchHHHHHHhcCCC------HHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCC-CccchhHHHHHH
Q 041252          228 NLMQPAKVSLLVDMLNEGS------VETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKR-HPNGILPGLSLL  300 (450)
Q Consensus       228 ~i~~~g~i~~Lv~lL~~~~------~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~-~~~~~~~al~aL  300 (450)
                      .+++.+|+..|++++.++.      .+....+..++.+|.+.+....+ ..+..++...+..++... +.++...++..|
T Consensus         6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            4667899999999998875      36667778888888776544444 345678889999888643 577888999999


Q ss_pred             HHhccChHHHHHHHh-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-h-hhHHHHhc
Q 041252          301 RSICLLNEVRSLVVS-IGAVPQLVELLPSLDPDCLQLALCILDALSSL-P-EGKLALKD  356 (450)
Q Consensus       301 ~~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~-e~r~~i~~  356 (450)
                      -++..+.......|+ .=-++.|+..|...+.+++.+|+..+-.|-.. + ..|+.+.+
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~  143 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAE  143 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            999987777666665 45688899999999999999999999888643 3 44445543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.39  E-value=0.26  Score=48.84  Aligned_cols=155  Identities=21%  Similarity=0.156  Sum_probs=107.3

Q ss_pred             ChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh
Q 041252          192 GVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV  271 (450)
Q Consensus       192 ~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~  271 (450)
                      .++.+...+.+. +..++..|...+..+          ....+++.+..+|.+.+..+|..|+.+|..+-          
T Consensus        44 ~~~~~~~~l~~~-~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------  102 (335)
T COG1413          44 AADELLKLLEDE-DLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGELG----------  102 (335)
T ss_pred             hHHHHHHHHcCC-CHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------
Confidence            577788888775 667777777774432          23567999999999999999999999776651          


Q ss_pred             hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhH------------HHHHHH
Q 041252          272 SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDC------------LQLALC  339 (450)
Q Consensus       272 ~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~------------~~~al~  339 (450)
                       ....++.|+.++....+..++..++.+|..+-...          ++..++..+.+.....            +..+..
T Consensus       103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~  171 (335)
T COG1413         103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE  171 (335)
T ss_pred             -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence             12246888888885336778888888888775322          2677888887654322            222222


Q ss_pred             HHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 041252          340 ILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKI  389 (450)
Q Consensus       340 ~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~  389 (450)
                      +|..          +.+ ...++.+...+......++..|..+|..+...
T Consensus       172 ~l~~----------~~~-~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~  210 (335)
T COG1413         172 ALGE----------LGD-PEAIPLLIELLEDEDADVRRAAASALGQLGSE  210 (335)
T ss_pred             HHHH----------cCC-hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence            2222          222 56788888888888888888888888877665

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=0.18  Score=53.08  Aligned_cols=271  Identities=14%  Similarity=0.117  Sum_probs=157.4

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhC-ChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEG-GVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G-~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      -+++++...++.++..|..|+.++-...-...  ...+..-. .++.+..+-.. .+++++.+.+.++..|-.....  .
T Consensus       175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalanD-~~~eVRk~vC~alv~Llevr~d--k  249 (885)
T KOG2023|consen  175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALAND-EDPEVRKNVCRALVFLLEVRPD--K  249 (885)
T ss_pred             hHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHhcHH--h
Confidence            47788888899889999999998876553221  12222111 13344444333 4789999999888876543222  2


Q ss_pred             ccC--CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhh--hhHHHHHHH----------HHhcCCC-----
Q 041252          229 LMQ--PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSS--HRLLIGLMR----------LVKNKRH-----  289 (450)
Q Consensus       229 i~~--~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~--~g~l~~Lv~----------lL~~~~~-----  289 (450)
                      ++-  .+.++.++..-...+.++...|+.....+++.. ..+.+...  ..++|.|++          +|++..+     
T Consensus       250 l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp  328 (885)
T KOG2023|consen  250 LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVP  328 (885)
T ss_pred             cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCC
Confidence            322  567777777777778889999999999998776 44444432  235555554          2331000     


Q ss_pred             ----------------------------------------ccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCC
Q 041252          290 ----------------------------------------PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSL  329 (450)
Q Consensus       290 ----------------------------------------~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~  329 (450)
                                                              .+.++-++.+|--|+.-  .+..+.. -.+|.|-+.|.+.
T Consensus       329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~-~l~PlLk~~L~~~  405 (885)
T KOG2023|consen  329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLP-ILLPLLKEHLSSE  405 (885)
T ss_pred             chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh--hHHHHHH-HHHHHHHHHcCcc
Confidence                                                    22333333334333311  1111111 1344555555665


Q ss_pred             ChhHHHHHHHHHHHhcCChhhHHH-Hhcc-CCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHH
Q 041252          330 DPDCLQLALCILDALSSLPEGKLA-LKDC-ANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKL  407 (450)
Q Consensus       330 ~~~~~~~al~~L~~L~~~~e~r~~-i~~~-~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L  407 (450)
                      +=.++|.++-+|..++.   |+.. ++.+ ...||.|+++|....+-++.-.++.|...+..--.+-...-.. -+...|
T Consensus       406 ~W~vrEagvLAlGAIAE---GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~~l  481 (885)
T KOG2023|consen  406 EWKVREAGVLALGAIAE---GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLEGL  481 (885)
T ss_pred             hhhhhhhhHHHHHHHHH---HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHHHH
Confidence            66789999988888874   3332 3331 1268889999999888888888888766554321111111111 122223


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252          408 FLVIQSGCNPVLKQRSAELLKLCSLNY  434 (450)
Q Consensus       408 ~~ll~s~~~~~~k~~A~~lL~~ls~~~  434 (450)
                      +..+-.+ +..++++|......+-.+.
T Consensus       482 l~~llD~-NK~VQEAAcsAfAtleE~A  507 (885)
T KOG2023|consen  482 LRRLLDS-NKKVQEAACSAFATLEEEA  507 (885)
T ss_pred             HHHHhcc-cHHHHHHHHHHHHHHHHhc
Confidence            3333333 6788999988888776664

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.29  E-value=0.0052  Score=43.61  Aligned_cols=54  Identities=17%  Similarity=-0.029  Sum_probs=45.0

Q ss_pred             cchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHh
Q 041252          291 NGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDAL  344 (450)
Q Consensus       291 ~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L  344 (450)
                      .++..|+.+|.+++........-....+++.|+.+|.+.++.++..|+++|.+|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            467889999999986665555556678899999999998899999999999875

...

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=0.22  Score=53.12  Aligned_cols=260  Identities=14%  Similarity=0.110  Sum_probs=165.2

Q ss_pred             cchHHHHHHHHHHHHHHHH------cHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcC-CCchhhhhccCCC
Q 041252          161 VKGQARVQALKELHQIAAA------HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLT-LDSESKTNLMQPA  233 (450)
Q Consensus       161 ~~~~~~~~Al~~L~~l~~~------~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls-~~~~~k~~i~~~g  233 (450)
                      ++..+|..|+++|.+--..      ++..|..+     ....++.-.+. +.+++..|...|..+. ..-+....-++..
T Consensus       186 ~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~i-----MqvvcEatq~~-d~~i~~aa~~ClvkIm~LyY~~m~~yM~~a  259 (859)
T KOG1241|consen  186 TSAAVRLAALNALYNSLEFTKANFNNEMERNYI-----MQVVCEATQSP-DEEIQVAAFQCLVKIMSLYYEFMEPYMEQA  259 (859)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhhccHhhhcee-----eeeeeecccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566888899998764321      11222222     23444554444 7889999998888743 3444444444555


Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHhccC-C---------------ChhhHh--hhhhHHHHHHHHHhc------CCC
Q 041252          234 KVSLLVDMLNEGSVETKINCTRLIEKLMEEK-D---------------FRPEIV--SSHRLLIGLMRLVKN------KRH  289 (450)
Q Consensus       234 ~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~-~---------------~~~~~~--~~~g~l~~Lv~lL~~------~~~  289 (450)
                      ....-+.-+++.+.++...+...=.+++... |               ......  .-.+++|.|+++|..      +.+
T Consensus       260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~Dd  339 (859)
T KOG1241|consen  260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDD  339 (859)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccccc
Confidence            5666677788889999888887766665221 1               011111  113678888888864      113


Q ss_pred             ccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh--hHHHHhccCCChHHHHHH
Q 041252          290 PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPE--GKLALKDCANTIPNTVRL  367 (450)
Q Consensus       290 ~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e--~r~~i~~~~g~i~~Lv~l  367 (450)
                      .+.-++|..+|.-++..-.+  .|+. -++|.+=+-+++++-.-++.|+.++..+-..++  -...++  .+++|.++.+
T Consensus       340 Wnp~kAAg~CL~l~A~~~~D--~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~l  414 (859)
T KOG1241|consen  340 WNPAKAAGVCLMLFAQCVGD--DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINL  414 (859)
T ss_pred             CcHHHHHHHHHHHHHHHhcc--cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHH
Confidence            44556666666655432111  2222 234444445677788888999998888876643  334455  4899999999


Q ss_pred             HhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          368 LMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       368 L~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      +...+--+++.+.+.|..++...++.+-......+.++.++.-|...  |++-.++.+.+-.|...
T Consensus       415 m~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWAf~~Laea  478 (859)
T KOG1241|consen  415 MSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--PRVASNVCWAFISLAEA  478 (859)
T ss_pred             hcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHHHH
Confidence            99878888899999999999888755444455567777777766553  67777777777777655

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.12  Score=53.35  Aligned_cols=230  Identities=12%  Similarity=0.130  Sum_probs=135.6

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHh-hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVD-EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      .+-|+.+|+..+.++|..+=..|..+-.+- .++....+ ...++.++.=+.++ .+.++..|+..+..+..-...--..
T Consensus       210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI-~s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~  287 (675)
T KOG0212|consen  210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAEI-RSSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLL  287 (675)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-hcCccccCcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchhh
Confidence            455777888887777754433333322210 01111112 23467777777765 6789999999988865433332333


Q ss_pred             cCCCchHHHHHHhcCCCH-HHHHHHHH---HHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252          230 MQPAKVSLLVDMLNEGSV-ETKINCTR---LIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL  305 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~~~~~-~~~~~aa~---~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~  305 (450)
                      .-+|.+..++..+.+... ..++.+..   .|..+.+......+ +.-..++..|.+.+.++ ..+++..++.-+.-|-.
T Consensus       288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~  365 (675)
T KOG0212|consen  288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYH  365 (675)
T ss_pred             hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHh
Confidence            346667777777765433 34444332   34444333222222 22234677777777775 46677777777766665


Q ss_pred             ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 041252          306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWS  385 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  385 (450)
                      ...++.........+.|+.-|++.+.++...++..|+++|..++...-+    ..+..|.++......-....+.-++..
T Consensus       366 ~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~----~fl~sLL~~f~e~~~~l~~Rg~lIIRq  441 (675)
T KOG0212|consen  366 KAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLR----KFLLSLLEMFKEDTKLLEVRGNLIIRQ  441 (675)
T ss_pred             hCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHH----HHHHHHHHHHhhhhHHHHhhhhHHHHH
Confidence            5556555556788999999999999999999999999999876543211    122334444443333444555555555


Q ss_pred             hcc
Q 041252          386 ICK  388 (450)
Q Consensus       386 L~~  388 (450)
                      +|.
T Consensus       442 lC~  444 (675)
T KOG0212|consen  442 LCL  444 (675)
T ss_pred             HHH
Confidence            554

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.078  Score=58.23  Aligned_cols=138  Identities=16%  Similarity=0.129  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHhccCCChhhHhhhh----hHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHH
Q 041252          249 TKINCTRLIEKLMEEKDFRPEIVSSH----RLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVE  324 (450)
Q Consensus       249 ~~~~aa~~L~~La~~~~~~~~~~~~~----g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~  324 (450)
                      -.+.+..+|.||...+.....++++.    |.++-+...+....++.++.-++..+..+..+.+.-..+++.|.+..|+.
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence            34567788999977776555555443    55666677777777888999999999999999998999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhc-CChHHHHHHHHHHHHhcc
Q 041252          325 LLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMR-VSEDCTQYALSILWSICK  388 (450)
Q Consensus       325 lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~  388 (450)
                      +|.+ -+..++.++.+|..|+++++.-.+..+ .||+..+..++-. .++..+..|+..|..+..
T Consensus      1821 lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred             HHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence            9975 567999999999999999876666666 4888888777744 456777778888877654

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=96.19  E-value=0.0021  Score=63.85  Aligned_cols=47  Identities=23%  Similarity=0.588  Sum_probs=37.8

Q ss_pred             CCCCeeeCcCCCCCCCCCe----eCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252           65 EIPSVFVCPISLEPMQDPV----TLCTGQTYERSNILKWFSLGRYTCPTTMQEL  114 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l  114 (450)
                      .+-+..+||+|.+-|.+-+    ++.|.|+|--+|+.+|+.   .+||+||.-.
T Consensus       171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q  221 (493)
T KOG0804|consen  171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQ  221 (493)
T ss_pred             CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhc
Confidence            3345679999999999876    457999999999999954   5689987543

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.003  Score=60.30  Aligned_cols=49  Identities=27%  Similarity=0.403  Sum_probs=42.0

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252           65 EIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLGRYTCPTTMQEL  114 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l  114 (450)
                      -.|..-.||+|..--.+|.++. +|+.||..||-.+..+ +..||+|+.+.
T Consensus       296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~  345 (357)
T KOG0826|consen  296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPA  345 (357)
T ss_pred             CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcc
Confidence            4456678999999989888775 6999999999999995 88999998765

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.15  E-value=0.64  Score=48.70  Aligned_cols=231  Identities=13%  Similarity=0.099  Sum_probs=131.3

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcH--HHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh-hh
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHA--SARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES-KT  227 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~--~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~-k~  227 (450)
                      +..++..|++..+++|.+|+.....++.--.  .--+.+...|.|  |-+-|... ..++.-..++++..+-..-.- +-
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~-ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED-YPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc-cHHHHHHHHHHHHHHhhhhccccc
Confidence            5667788899999999999988877764211  012344555533  45556543 667777666776654332111 11


Q ss_pred             hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh---hhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR---PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~---~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                      .---.|.+|.|.-+|++....+..+...++..++......   ++.+   .+.-.|+.+|++- +.+.+.+|...+.-++
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~-nKeiRR~A~~tfG~Is  758 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSW-NKEIRRNATETFGCIS  758 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHh-hHHHHHhhhhhhhhHH
Confidence            1112688999999999999999999998888887544321   2221   2345667777663 4555555555444333


Q ss_pred             ---cChH---------------HH------HHHH-h-cCC---HHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHH
Q 041252          305 ---LLNE---------------VR------SLVV-S-IGA---VPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLA  353 (450)
Q Consensus       305 ---~~~~---------------~~------~~iv-~-~G~---v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~  353 (450)
                         +..+               +|      ..+| + .|-   +|.|+.--..++..++.-.+++++.+-..  ...+.-
T Consensus       759 ~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dY  838 (975)
T COG5181         759 RAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDY  838 (975)
T ss_pred             hhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence               1111               11      1222 2 233   33333333445667888777777776643  222333


Q ss_pred             HhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCc
Q 041252          354 LKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP  391 (450)
Q Consensus       354 i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~  391 (450)
                      +.   -..|.|-..|...++.-++.|..++..|+.+++
T Consensus       839 vy---~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~  873 (975)
T COG5181         839 VY---SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP  873 (975)
T ss_pred             HH---HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence            32   234455555555555566666666666655543

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.12  Score=53.15  Aligned_cols=184  Identities=13%  Similarity=0.023  Sum_probs=130.6

Q ss_pred             hhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          225 SKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       225 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                      -|..+.+....++|+++|+.++..+.--+...+.++.-.-+.....+-..|++..|+.++.++ +...+++..|.|+.+-
T Consensus       423 LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-DdaLqans~wvlrHlm  501 (743)
T COG5369         423 LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-DDALQANSEWVLRHLM  501 (743)
T ss_pred             HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-hhhhhhcchhhhhhhh
Confidence            356778889999999999886666666777888888644444455567789999999999987 6778999999999998


Q ss_pred             cC--hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC----hhhHHHHhccCC----ChHHHHHHHhcCChH
Q 041252          305 LL--NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL----PEGKLALKDCAN----TIPNTVRLLMRVSED  374 (450)
Q Consensus       305 ~~--~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~----~e~r~~i~~~~g----~i~~Lv~lL~~~s~~  374 (450)
                      .+  +..+-+....-++..++++..+++-.+++.++.+|+|+.-+    ++.+..+.. .-    ....|++.+...++-
T Consensus       502 yncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K-~~p~~ylfk~l~~k~e~~np~  580 (743)
T COG5369         502 YNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIK-ATPRRYLFKRLIDKYEENNPM  580 (743)
T ss_pred             hcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEe-cChHHHHHHHHHHHHHhcCch
Confidence            43  33466777777889999999999999999999999999642    223333322 11    233556666666776


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHH-hcChHHHHHHHH
Q 041252          375 CTQYALSILWSICKIAPEECSSAAV-DAGLAAKLFLVI  411 (450)
Q Consensus       375 ~~e~A~~~L~~L~~~~~~~~~~~~~-~~G~i~~L~~ll  411 (450)
                      -.+..+.+|.+++..+.+ ....+. +...+..+..+|
T Consensus       581 ~i~~~~yilv~~aa~d~~-l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         581 EILEGCYILVRNAACDDT-LDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             hhhhhHHHHHHHHhccch-HHHHHHhHHHHHHHHHHHH
Confidence            667778888888887643 333333 344444444444

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.94  E-value=0.34  Score=51.88  Aligned_cols=269  Identities=16%  Similarity=0.149  Sum_probs=149.6

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh-hhh
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES-KTN  228 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~-k~~  228 (450)
                      ...++...+++.++.+|..|.-...++-.   .+.+.+...|.++.|-.++... +..+..+|+.+|.++...+.+ ...
T Consensus       122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~~~~~~~  197 (734)
T KOG1061|consen  122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHESHPSVNLL  197 (734)
T ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHhCCCCCcc
Confidence            35678888888889999988888777753   3557788899999999999864 678999999999987664433 112


Q ss_pred             ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252          229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE  308 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~  308 (450)
                      ......+..++..|+..+.-.+   +.+|..|+.....-.  .....++..+...|.+. ++.++..+...+.++.....
T Consensus       198 ~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~--~ea~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~  271 (734)
T KOG1061|consen  198 ELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDS--REAEDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLK  271 (734)
T ss_pred             cccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCc--hhHHHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHH
Confidence            2223344444444443332222   234444543221111  12234455555556654 45667777777777764333


Q ss_pred             HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-Chh-------------------------hHHHHhccCCC--
Q 041252          309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS-LPE-------------------------GKLALKDCANT--  360 (450)
Q Consensus       309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e-------------------------~r~~i~~~~g~--  360 (450)
                      ......-.-.-++|+.++++.+ +++--|+.=+..+-. .|+                         .+..+...++.  
T Consensus       272 ~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q  350 (734)
T KOG1061|consen  272 QVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ  350 (734)
T ss_pred             HHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence            3333444445567777776544 444333322221111 111                         00111110010  


Q ss_pred             -hHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252          361 -IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT  437 (450)
Q Consensus       361 -i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~  437 (450)
                       +.-+.+.-...+....+.|++++..++..-+     .  ..+.+..|+.+++-+ ..-+.+-+...++.+-+.|.+.
T Consensus       351 vl~El~eYatevD~~fvrkaIraig~~aik~e-----~--~~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP~~  420 (734)
T KOG1061|consen  351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAE-----Q--SNDCVSILLELLETK-VDYVVQEAIVVIRDILRKYPNK  420 (734)
T ss_pred             HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh-----h--hhhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCCCc
Confidence             1111222222344555667777766654321     1  168899999999866 4455566677777777766654

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=95.92  E-value=0.0029  Score=62.30  Aligned_cols=35  Identities=11%  Similarity=0.228  Sum_probs=30.6

Q ss_pred             CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHh
Q 041252           67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFS  101 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~  101 (450)
                      .+++.||||...++||++++|||+.||.|-..-+.
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            35788999999999999999999999999775543

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.88  E-value=0.62  Score=51.33  Aligned_cols=246  Identities=14%  Similarity=0.173  Sum_probs=148.8

Q ss_pred             HHHHhhCChHHHHhhhCCCC----ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhc----CCC----HHHHHH
Q 041252          185 KTMVDEGGVALISSLLGPFT----SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLN----EGS----VETKIN  252 (450)
Q Consensus       185 ~~i~~~G~i~~Lv~lL~~~~----~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~----~~~----~~~~~~  252 (450)
                      ..+.+.||+..++.+|.+..    ........+.+|...+.-..||+.+.+.|+++.|++.|.    .++    .++-+.
T Consensus       111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~  190 (802)
T PF13764_consen  111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ  190 (802)
T ss_pred             HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence            45678899999999987632    345666778888888889999999999999999999885    323    566777


Q ss_pred             HHHHHHHHhccCC---Chhh-----Hhh----hhhHHHHHHHHHhcC---CCccchhHHHHHHHHhccCh-HHHHHHHhc
Q 041252          253 CTRLIEKLMEEKD---FRPE-----IVS----SHRLLIGLMRLVKNK---RHPNGILPGLSLLRSICLLN-EVRSLVVSI  316 (450)
Q Consensus       253 aa~~L~~La~~~~---~~~~-----~~~----~~g~l~~Lv~lL~~~---~~~~~~~~al~aL~~Ls~~~-~~~~~iv~~  316 (450)
                      ...++..|.....   ....     ...    ...-+..+++.+.+.   .++.+....++.|-+|+..+ +.-..+++.
T Consensus       191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~  270 (802)
T PF13764_consen  191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH  270 (802)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence            7777777742211   1100     000    223466666666653   24566778888899998544 444444432


Q ss_pred             CCHHHHHHhc--CC---CChhH-HHHHHHHHHHhcCCh---hhHHHHhccCCChHHHHHHHhcC--------ChHHH---
Q 041252          317 GAVPQLVELL--PS---LDPDC-LQLALCILDALSSLP---EGKLALKDCANTIPNTVRLLMRV--------SEDCT---  376 (450)
Q Consensus       317 G~v~~Lv~lL--~~---~~~~~-~~~al~~L~~L~~~~---e~r~~i~~~~g~i~~Lv~lL~~~--------s~~~~---  376 (450)
                        +.+.+++=  ..   .+... .+..+.+...+-.+.   .-|..+.+ .|.+...++.|..+        |++.+   
T Consensus       271 --F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l  347 (802)
T PF13764_consen  271 --FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEWKEFL  347 (802)
T ss_pred             --HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence              12222211  10   11112 222233333332222   34677777 79999899888764        23333   


Q ss_pred             -----HHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252          377 -----QYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       377 -----e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~  435 (450)
                           .+++..|.-+|.... . .+.++..++++.+-.+=+..+...+-.-|-.+|.-++.+..
T Consensus       348 ~~psLp~iL~lL~GLa~gh~-~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~  409 (802)
T PF13764_consen  348 SRPSLPYILRLLRGLARGHE-P-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED  409 (802)
T ss_pred             cCCcHHHHHHHHHHHHhcCH-H-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence                 457888888888664 2 23446666775554444555455666777777777776543

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.85  E-value=0.45  Score=44.34  Aligned_cols=150  Identities=17%  Similarity=0.138  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC----CCChhhHHHHHHHHHhcCCCc--hhhhhccCCCchHHH
Q 041252          165 ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGP----FTSHAVGSEAVGVLVNLTLDS--ESKTNLMQPAKVSLL  238 (450)
Q Consensus       165 ~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~----~~~~~v~~~Al~~L~~Ls~~~--~~k~~i~~~g~i~~L  238 (450)
                      -...|+.-|+-++ .+++.|..+..+..---|-.+|..    ...+-.+-.+++++..|...+  +.-..+...+.||..
T Consensus        95 RVcnaL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   95 RVCNALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             hHHHHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            4455666666665 568889988888743344566643    223446677899999877644  445567789999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh------hh-hhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHH
Q 041252          239 VDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV------SS-HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS  311 (450)
Q Consensus       239 v~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~------~~-~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~  311 (450)
                      ++.+..|+...+.-|+.++..+..++.....+-      .. .-.+..++.-+.+..++...+.+.++..+|+.++..|.
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~  253 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA  253 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence            999999999999999999998866654332221      11 12344444444444467778899999999999998887


Q ss_pred             HHHh
Q 041252          312 LVVS  315 (450)
Q Consensus       312 ~iv~  315 (450)
                      .+..
T Consensus       254 aL~~  257 (293)
T KOG3036|consen  254 ALRS  257 (293)
T ss_pred             HHHh
Confidence            6654

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.82  E-value=0.9  Score=42.42  Aligned_cols=153  Identities=19%  Similarity=0.086  Sum_probs=107.7

Q ss_pred             cchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCC-----CChhHHHHHHHHHHHhcCCh--hhHHHHhccCCChHH
Q 041252          291 NGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPS-----LDPDCLQLALCILDALSSLP--EGKLALKDCANTIPN  363 (450)
Q Consensus       291 ~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~al~~L~~L~~~~--e~r~~i~~~~g~i~~  363 (450)
                      +-+-+++..|.-++++++.|..++++..--.|..+|..     ..+.++-.+++++..|..++  +.-..+.. .+.||.
T Consensus        94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~-TeIVPl  172 (293)
T KOG3036|consen   94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLT-TEIVPL  172 (293)
T ss_pred             chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHH-hhhHHH
Confidence            34568888999999999999999999877777777733     24678899999999999773  33334445 799999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcccCchh--HHHHHHh----cChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252          364 TVRLLMRVSEDCTQYALSILWSICKIAPEE--CSSAAVD----AGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT  437 (450)
Q Consensus       364 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~--~~~~~~~----~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~  437 (450)
                      .++.+..+|+..+..|..++-.+-..+..-  ..+..-+    +-.+..++.-+.+..++++-+.+.+..-.++.|.+..
T Consensus       173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar  252 (293)
T KOG3036|consen  173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR  252 (293)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999998876655331  1111111    1223333333333336777777777777777776666


Q ss_pred             ccccccc
Q 041252          438 TFISKCK  444 (450)
Q Consensus       438 ~~i~~~~  444 (450)
                      ...++|.
T Consensus       253 ~aL~~cl  259 (293)
T KOG3036|consen  253 AALRSCL  259 (293)
T ss_pred             HHHHhhC
Confidence            6666664

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=95.75  E-value=0.38  Score=50.25  Aligned_cols=226  Identities=15%  Similarity=0.106  Sum_probs=143.5

Q ss_pred             hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhh
Q 041252          193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVS  272 (450)
Q Consensus       193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~  272 (450)
                      +..+..-+... +..+++.....|..+....+..   ...-..+.+.+++.......+..++..+..+..+..  .+...
T Consensus        98 ~~~~~~~~~tp-s~~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~~  171 (569)
T KOG1242|consen   98 IEILLEELDTP-SKSVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESLK  171 (569)
T ss_pred             HHHHHHhcCCC-cHHHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhhh
Confidence            34455555543 5667766666665544322221   123457788888988899999999999999965442  33456


Q ss_pred             hhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhc---CCCChhHHHHHHHHHHHhcCC--
Q 041252          273 SHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL---PSLDPDCLQLALCILDALSSL--  347 (450)
Q Consensus       273 ~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL---~~~~~~~~~~al~~L~~L~~~--  347 (450)
                      ..+++..|-..+.++.+..-++.++-+.-..+.+-   ....+.+.++.+-.++   .+..+.+++.|..+...+-.+  
T Consensus       172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L---g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~  248 (569)
T KOG1242|consen  172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL---GPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS  248 (569)
T ss_pred             hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc---CCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence            67888888888887643333333333333332211   1344556666666666   445678888888887777554  


Q ss_pred             hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHH
Q 041252          348 PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELL  427 (450)
Q Consensus       348 ~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL  427 (450)
                      +.+-+.+      +|+++.-+....=+.+.+++..|..+..+.+..  -......++|.|...|.+. .+++|+++...+
T Consensus       249 ~~aVK~l------lpsll~~l~~~kWrtK~aslellg~m~~~ap~q--Ls~~lp~iiP~lsevl~DT-~~evr~a~~~~l  319 (569)
T KOG1242|consen  249 AYAVKLL------LPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ--LSLCLPDLIPVLSEVLWDT-KPEVRKAGIETL  319 (569)
T ss_pred             cchhhHh------hhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH--HHHHHhHhhHHHHHHHccC-CHHHHHHHHHHH
Confidence            3333333      334444444333466788899999888888643  3445567999999999775 799999999887


Q ss_pred             HHHHhhcCC
Q 041252          428 KLCSLNYTD  436 (450)
Q Consensus       428 ~~ls~~~~~  436 (450)
                      ..+...-.+
T Consensus       320 ~~~~svidN  328 (569)
T KOG1242|consen  320 LKFGSVIDN  328 (569)
T ss_pred             HHHHHhhcc
Confidence            776665444

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=95.72  E-value=1.4  Score=46.03  Aligned_cols=249  Identities=16%  Similarity=0.176  Sum_probs=125.1

Q ss_pred             HHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHH
Q 041252          171 KELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETK  250 (450)
Q Consensus       171 ~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~  250 (450)
                      +....+.+.+++.+.++     .|.|-.-|++. -+.+.-+++.++..++...- -..+ -...++.|-.+|.+.....|
T Consensus       249 r~~~~ll~~n~q~~~q~-----rpfL~~wls~k-~emV~lE~Ar~v~~~~~~nv-~~~~-~~~~vs~L~~fL~s~rv~~r  320 (898)
T COG5240         249 RATVELLKENSQALLQL-----RPFLNSWLSDK-FEMVFLEAARAVCALSEENV-GSQF-VDQTVSSLRTFLKSTRVVLR  320 (898)
T ss_pred             HHHHHHHHhChHHHHHH-----HHHHHHHhcCc-chhhhHHHHHHHHHHHHhcc-CHHH-HHHHHHHHHHHHhcchHHHH
Confidence            33334444444444443     24444455443 34566667777665553210 0000 02346666777777788888


Q ss_pred             HHHHHHHHHHhccCCC--------hhhHhhh------------------hhHHHHHHHHHhc---CCCccchhHHHHHHH
Q 041252          251 INCTRLIEKLMEEKDF--------RPEIVSS------------------HRLLIGLMRLVKN---KRHPNGILPGLSLLR  301 (450)
Q Consensus       251 ~~aa~~L~~La~~~~~--------~~~~~~~------------------~g~l~~Lv~lL~~---~~~~~~~~~al~aL~  301 (450)
                      -.|.++|-.|+...+.        ....+..                  ..-+..|+.++.+   ..+...+.-+..|++
T Consensus       321 FsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~r  400 (898)
T COG5240         321 FSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALR  400 (898)
T ss_pred             HHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHH
Confidence            8888888887532211        0111100                  0122333332221   123456667777888


Q ss_pred             Hhcc-ChHHHHH--------HHhcCC-------HHHHHHhcCCCChhHHHHHHHHHHHhcCChh-hHHHHh-----ccCC
Q 041252          302 SICL-LNEVRSL--------VVSIGA-------VPQLVELLPSLDPDCLQLALCILDALSSLPE-GKLALK-----DCAN  359 (450)
Q Consensus       302 ~Ls~-~~~~~~~--------iv~~G~-------v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e-~r~~i~-----~~~g  359 (450)
                      .||. .+.-+..        +.+.|+       |+++.+++. ..|+.+|.|+..|+.....-+ ++..+.     ..+|
T Consensus       401 sLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~Eg  479 (898)
T COG5240         401 SLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREG  479 (898)
T ss_pred             HHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccC
Confidence            8873 3332222        233453       344455443 356778877766655443222 111111     1011


Q ss_pred             ----ChHHHHHHHhc----CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252          360 ----TIPNTVRLLMR----VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       360 ----~i~~Lv~lL~~----~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls  431 (450)
                          .-...|+.+-+    .+.-++..|+.+|..++.+..+..    ....+...|-..+... ++.+|..|.-+|+.+.
T Consensus       480 P~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----~~~sv~~~lkRclnD~-DdeVRdrAsf~l~~~~  554 (898)
T COG5240         480 PRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----SPQSVENALKRCLNDQ-DDEVRDRASFLLRNMR  554 (898)
T ss_pred             CCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----cHHHHHHHHHHHhhcc-cHHHHHHHHHHHHhhh
Confidence                11112222211    245567788888887776654322    2223444455566554 7899999999999987


Q ss_pred             hh
Q 041252          432 LN  433 (450)
Q Consensus       432 ~~  433 (450)
                      ..
T Consensus       555 ~~  556 (898)
T COG5240         555 LS  556 (898)
T ss_pred             hh
Confidence            54

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.69  E-value=0.29  Score=50.65  Aligned_cols=222  Identities=14%  Similarity=0.122  Sum_probs=136.7

Q ss_pred             ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHH----hccCCChhhHhhhhhHHHHH
Q 041252          205 SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKL----MEEKDFRPEIVSSHRLLIGL  280 (450)
Q Consensus       205 ~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~L----a~~~~~~~~~~~~~g~l~~L  280 (450)
                      +...+.-.+..|..|-.-+.-.-.=--+..++-|..+|..++.++|..+-.+|.++    .+..+.    +.-...++.+
T Consensus       180 n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s----~d~~~~i~vl  255 (675)
T KOG0212|consen  180 NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS----MDYDDMINVL  255 (675)
T ss_pred             CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc----cCcccchhhc
Confidence            44556556666665443222111101145677788888888999998877766555    222222    1223345667


Q ss_pred             HHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCCh-hHHHHHHH---HHHHhcCChhhHHHHhc
Q 041252          281 MRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDP-DCLQLALC---ILDALSSLPEGKLALKD  356 (450)
Q Consensus       281 v~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~-~~~~~al~---~L~~L~~~~e~r~~i~~  356 (450)
                      +.-+.++ ++..+..|+.-|.....-.......--.|++..++.++++..+ .+++.+..   .|..+++.+.....+ +
T Consensus       256 v~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i-d  333 (675)
T KOG0212|consen  256 VPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEI-D  333 (675)
T ss_pred             cccccCC-cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcccc-c
Confidence            7666664 5677777776666665433333333346788888888877655 34444433   355566655555443 3


Q ss_pred             cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252          357 CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       357 ~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~  435 (450)
                      -...|..+-+.+.......+-.++.-+..+-...|.+.  .......++.|+.-+... ++.+-..+..++..+....+
T Consensus       334 ~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql--~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  334 YGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL--LVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSSN  409 (675)
T ss_pred             hHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh--hhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCcc
Confidence            12467777888887788888888888888877776542  344567888888877655 67777888888877665533

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.60  E-value=0.085  Score=49.95  Aligned_cols=97  Identities=22%  Similarity=0.330  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHh-cCCCchhhhhccCCCchHHHHHHhc
Q 041252          165 ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVN-LTLDSESKTNLMQPAKVSLLVDMLN  243 (450)
Q Consensus       165 ~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~-Ls~~~~~k~~i~~~g~i~~Lv~lL~  243 (450)
                      ....|+..|+-++--|+..|..+....++..++++|....+..++..++.+|.. |..++.|.+.+-+.+|+..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            355688999999999999999999999999999999665567888899988888 6667789998889999999999998


Q ss_pred             CC--CHHHHHHHHHHHHHHh
Q 041252          244 EG--SVETKINCTRLIEKLM  261 (450)
Q Consensus       244 ~~--~~~~~~~aa~~L~~La  261 (450)
                      +.  +.++|..+...|+-..
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             cccccHHHhHHHHHHHHHHH
Confidence            65  6788888888876553

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.54  E-value=0.081  Score=56.16  Aligned_cols=112  Identities=13%  Similarity=0.135  Sum_probs=78.8

Q ss_pred             CchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh--hhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh-HH
Q 041252          233 AKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR--PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN-EV  309 (450)
Q Consensus       233 g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~--~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~-~~  309 (450)
                      ..+..+++.|++.++.+|+.|+.++..|+..-..+  ...++..|  ..|.+-|... .+++.-..++||..+.... -.
T Consensus       799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgee-ypEvLgsILgAikaI~nvigm~  875 (1172)
T KOG0213|consen  799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEE-YPEVLGSILGAIKAIVNVIGMT  875 (1172)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence            45777888999999999999999999996322111  22344455  4455656554 6888888888888776321 11


Q ss_pred             HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252          310 RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL  347 (450)
Q Consensus       310 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~  347 (450)
                      +..==-.|.+|.|..+|++....++++++..+..+|..
T Consensus       876 km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr  913 (1172)
T KOG0213|consen  876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR  913 (1172)
T ss_pred             ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc
Confidence            11111247889999999988999999999999999865

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.46  E-value=2.9  Score=44.77  Aligned_cols=253  Identities=16%  Similarity=0.176  Sum_probs=154.5

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cchhhhh
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSESKTN  228 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~k~~  228 (450)
                      ...+++.+|++..+.+|.+|+..|..+.-.=+   +++.-  .+|-|+.-|... |..++..|+.+++.|+. ++.|--.
T Consensus       145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYP---eAlr~--~FprL~EkLeDp-Dp~V~SAAV~VICELArKnPknyL~  218 (877)
T KOG1059|consen  145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYP---EALRP--CFPRLVEKLEDP-DPSVVSAAVSVICELARKNPQNYLQ  218 (877)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh---HhHhh--hHHHHHHhccCC-CchHHHHHHHHHHHHHhhCCccccc
Confidence            36678889999999999999999998876433   22221  368899988876 78999999999999986 3344322


Q ss_pred             ccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHH--Hhcc
Q 041252          229 LMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLR--SICL  305 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~--~Ls~  305 (450)
                      +     -|.+.++|.. .|.=+...-..+..+|+--.+   ..  ...++++|..++.+..-..+.-.+..++.  +++.
T Consensus       219 L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RL--gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  219 L-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RL--GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             c-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc---hh--hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence            2     3555566643 344444455556666643322   11  23356777777765321111112222211  2221


Q ss_pred             ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252          306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW  384 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~  384 (450)
                      ...+....+.. ++.-|-.++.+.|+.++-.++-++..+.. ++..-.+..+      .+++.|...++.++-.|+..|.
T Consensus       289 g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd------lIlrcL~DkD~SIRlrALdLl~  361 (877)
T KOG1059|consen  289 GMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD------LILRCLDDKDESIRLRALDLLY  361 (877)
T ss_pred             CCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH------HHHHHhccCCchhHHHHHHHHH
Confidence            11111111111 45677778888899999999999998874 4655555544      7788999899999999999988


Q ss_pred             HhcccCchhHHHHHHhcChHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhh
Q 041252          385 SICKIAPEECSSAAVDAGLAAKLFLVI-QSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       385 ~L~~~~~~~~~~~~~~~G~i~~L~~ll-~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      .+....  + ..+     ++..|+..+ .+..+.---+....++..||.+
T Consensus       362 gmVskk--N-l~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~s  403 (877)
T KOG1059|consen  362 GMVSKK--N-LME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQS  403 (877)
T ss_pred             HHhhhh--h-HHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence            775532  2 222     334454433 3332222335566677777776

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.43  E-value=0.0089  Score=56.69  Aligned_cols=45  Identities=29%  Similarity=0.580  Sum_probs=38.5

Q ss_pred             CeeeCcCCCCCCCC---CeeCCCCCcccHHHHHHHHhcC--CCCCCCcCC
Q 041252           68 SVFVCPISLEPMQD---PVTLCTGQTYERSNILKWFSLG--RYTCPTTMQ  112 (450)
Q Consensus        68 ~~~~Cpi~~~~m~d---Pv~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~  112 (450)
                      +-|+||+.++.-.|   |+.+.|||...+.++.+--++|  .+.||.|-.
T Consensus       335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~  384 (396)
T COG5109         335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE  384 (396)
T ss_pred             ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence            35899999998876   9999999999999999988877  456999943

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.37  E-value=0.053  Score=48.89  Aligned_cols=79  Identities=22%  Similarity=0.216  Sum_probs=66.4

Q ss_pred             HHHHHHhcCCHHHHHHhcCC---------CChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHH
Q 041252          309 VRSLVVSIGAVPQLVELLPS---------LDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYA  379 (450)
Q Consensus       309 ~~~~iv~~G~v~~Lv~lL~~---------~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A  379 (450)
                      -...+++.||+..|+.+|..         .+......++.+|..|..+..|...+..+.+++..++..|.+.+..++..+
T Consensus        99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~  178 (187)
T PF06371_consen   99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLA  178 (187)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHH
T ss_pred             HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHH
Confidence            34577788999999988822         345788899999999999999999999989999999999999999999999


Q ss_pred             HHHHHHhc
Q 041252          380 LSILWSIC  387 (450)
Q Consensus       380 ~~~L~~L~  387 (450)
                      +.+|..+|
T Consensus       179 leiL~~lc  186 (187)
T PF06371_consen  179 LEILAALC  186 (187)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.35  E-value=1.8  Score=42.55  Aligned_cols=191  Identities=19%  Similarity=0.145  Sum_probs=105.0

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHh--hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC---chh
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVD--EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD---SES  225 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~---~~~  225 (450)
                      +...+..+.......|..++..|..+...+.. -..+.+  .-.+..+.+.++... .+-+..|+.++..++..   .+.
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCcc
Confidence            55666677766778899999999888765432 222222  123567777777653 34555566666555443   122


Q ss_pred             hhhccCCCchHHHHHHhcCC--CHHHHHHHHHHHHHHhc--cCCChhhHhhhhhHHHHHHHH--HhcCCC---------c
Q 041252          226 KTNLMQPAKVSLLVDMLNEG--SVETKINCTRLIEKLME--EKDFRPEIVSSHRLLIGLMRL--VKNKRH---------P  290 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~--~~~~~~~~~~~~g~l~~Lv~l--L~~~~~---------~  290 (450)
                      ...+. ....+.|...+..+  ++..|..++.+|.-++.  ..+ ...+......+..+...  ++.+++         +
T Consensus       123 ~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d-~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  123 SEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD-EEETEELMESLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence            22222 24567777777754  45666676666655532  111 11111111223322221  222211         2


Q ss_pred             cchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252          291 NGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS  345 (450)
Q Consensus       291 ~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~  345 (450)
                      .+..+|+.+-.-|. ..+.....-.-...++.|+.+|.+.+.+++..|-.+|+.|-
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            34555555444333 22332222222456999999999999999999988888774

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.31  E-value=0.36  Score=53.33  Aligned_cols=204  Identities=12%  Similarity=0.122  Sum_probs=136.2

Q ss_pred             cCCCchHHHHHHhcCCCHHHHHHHHHHHHHH-hccCCChhhHhhhhhHHHHHHHHHhcC--CCccchhHHHHHHHHhc-c
Q 041252          230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKL-MEEKDFRPEIVSSHRLLIGLMRLVKNK--RHPNGILPGLSLLRSIC-L  305 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~L-a~~~~~~~~~~~~~g~l~~Lv~lL~~~--~~~~~~~~al~aL~~Ls-~  305 (450)
                      ..-|..|.++++|++.-.+.|..-+.+=..+ +-+.....+.+.+ ++-...++.|.++  -+++-+..|+-.|..++ .
T Consensus       509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe-~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n  587 (1387)
T KOG1517|consen  509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKE-NGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN  587 (1387)
T ss_pred             hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhc-cCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence            3579999999999999999998877665554 4444334444433 3334444445442  12244556777788887 4


Q ss_pred             ChHHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252          306 LNEVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL  383 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  383 (450)
                      ....+....+.+.+..=++.|.++ .+-++..++-.|..|=.+ +++|-.=.+ .++-..|+.+|....++++..|+-+|
T Consensus       588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFAL  666 (1387)
T KOG1517|consen  588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFAL  666 (1387)
T ss_pred             cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHHH
Confidence            556777788889999888889775 466777777788888654 777766566 79999999999999999999999999


Q ss_pred             HHhcccC----chhH--H---------HHHHhcChH---HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252          384 WSICKIA----PEEC--S---------SAAVDAGLA---AKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD  436 (450)
Q Consensus       384 ~~L~~~~----~~~~--~---------~~~~~~G~i---~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~  436 (450)
                      ..+-...    ++..  .         +..++.-..   ..++.+++.+ ++..+...+..|..+...|.+
T Consensus       667 gtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~  736 (1387)
T KOG1517|consen  667 GTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVS  736 (1387)
T ss_pred             HHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHH
Confidence            8876642    2211  1         011222222   2566666777 677776666666665555443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.28  E-value=0.0091  Score=58.70  Aligned_cols=59  Identities=22%  Similarity=0.437  Sum_probs=44.6

Q ss_pred             eeCcCCCCCCCCCe-----eCCCCCcccHHHHHHHHhcC-CCCCCCcCCcCCCCCCcchHHHHHH
Q 041252           70 FVCPISLEPMQDPV-----TLCTGQTYERSNILKWFSLG-RYTCPTTMQELWDDSVTPNKTLYHL  128 (450)
Q Consensus        70 ~~Cpi~~~~m~dPv-----~~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~~l~~n~~L~~~  128 (450)
                      -+||||.+-..-|+     ++.|||-|--+||++|+-+. ...||.|...-....+.+-.++|..
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q   69 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ   69 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence            47999999888665     57899999999999999532 2359999765555666666666553

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.27  E-value=4.9  Score=43.63  Aligned_cols=254  Identities=16%  Similarity=0.151  Sum_probs=134.9

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHH--------HHHHHHhh--CC----hHHHHhhhCCCC-----ChhhH
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHAS--------ARKTMVDE--GG----VALISSLLGPFT-----SHAVG  209 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~--------~r~~i~~~--G~----i~~Lv~lL~~~~-----~~~v~  209 (450)
                      +..+++.+.|+..++.+|.+|+-++..+-...++        .|+.+.+.  |+    +..+.++.+.+.     ..+..
T Consensus       142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~  221 (866)
T KOG1062|consen  142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLV  221 (866)
T ss_pred             HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3456677778888889999998888776655443        33444332  32    333444443321     11233


Q ss_pred             HHHHHHHHhcCCCchhhh----hccCCC---chHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhh--h-----
Q 041252          210 SEAVGVLVNLTLDSESKT----NLMQPA---KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSH--R-----  275 (450)
Q Consensus       210 ~~Al~~L~~Ls~~~~~k~----~i~~~g---~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~--g-----  275 (450)
                      ..-+.+|.++....-..+    .|-++=   -+-.++++|..++.+..+.-..+|..++...+..+.+..+.  .     
T Consensus       222 ~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI  301 (866)
T KOG1062|consen  222 PSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTI  301 (866)
T ss_pred             HHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence            445566666554221111    111110   13445666777888888888888888865444443332221  1     


Q ss_pred             ------------HHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHH
Q 041252          276 ------------LLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDA  343 (450)
Q Consensus       276 ------------~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~  343 (450)
                                  ++..|-++|.+. +.+.+--|+..|..+...+.+..+=-+    ..+++.|++.|..++..|+..+..
T Consensus       302 ~~I~~~~~LrvlainiLgkFL~n~-d~NirYvaLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~  376 (866)
T KOG1062|consen  302 MDIRSNSGLRVLAINILGKFLLNR-DNNIRYVALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYA  376 (866)
T ss_pred             HhccCCchHHHHHHHHHHHHhcCC-ccceeeeehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHH
Confidence                        222333333332 233444444444444322221111111    267888999999999999999998


Q ss_pred             hcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc-cCchhH--HHHH----------HhcChHHHHHHH
Q 041252          344 LSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK-IAPEEC--SSAA----------VDAGLAAKLFLV  410 (450)
Q Consensus       344 L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~-~~~~~~--~~~~----------~~~G~i~~L~~l  410 (450)
                      |.. +.|-..+++      .|+..|...++..+...++-+..++. .+|++.  ...+          +...++.-++.+
T Consensus       377 lvn-~~Nv~~mv~------eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~L  449 (866)
T KOG1062|consen  377 LVN-ESNVRVMVK------ELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRL  449 (866)
T ss_pred             Hhc-cccHHHHHH------HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHH
Confidence            875 445555544      56777766676666665555555543 344321  1111          223455666677


Q ss_pred             HHcC
Q 041252          411 IQSG  414 (450)
Q Consensus       411 l~s~  414 (450)
                      +.++
T Consensus       450 Ia~~  453 (866)
T KOG1062|consen  450 IANA  453 (866)
T ss_pred             HhcC
Confidence            7665

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.24  E-value=0.021  Score=39.75  Aligned_cols=45  Identities=18%  Similarity=0.434  Sum_probs=25.4

Q ss_pred             eeeCcCCCCCCCCCee-CCCCCc--ccHHHHHHHH-hcCCCCCCCcCCc
Q 041252           69 VFVCPISLEPMQDPVT-LCTGQT--YERSNILKWF-SLGRYTCPTTMQE  113 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~-~~~g~t--y~r~~I~~~~-~~~~~~cP~~~~~  113 (450)
                      .+.|||+...|+-|+- ..|.|.  ||-...-+.. ..+...||.|+++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            3689999999999996 458876  7775555543 3456789999763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.23  E-value=0.51  Score=50.47  Aligned_cols=232  Identities=12%  Similarity=0.093  Sum_probs=135.2

Q ss_pred             HHHhhccchHHHHHHHHHHHHHHHHcHH----------------HHHHHHh--hCChHHHHhhhCCCC-----ChhhHHH
Q 041252          155 LGTLKKVKGQARVQALKELHQIAAAHAS----------------ARKTMVD--EGGVALISSLLGPFT-----SHAVGSE  211 (450)
Q Consensus       155 v~~L~~~~~~~~~~Al~~L~~l~~~~~~----------------~r~~i~~--~G~i~~Lv~lL~~~~-----~~~v~~~  211 (450)
                      +..+++.+.++..++++.=..+|.+.-+                ++.....  .+.+|.|+++|...+     |.--...
T Consensus       265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~k  344 (859)
T KOG1241|consen  265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAK  344 (859)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHH
Confidence            3344566666766666666656543221                1111111  155788888885421     1111122


Q ss_pred             H----HHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC
Q 041252          212 A----VGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK  287 (450)
Q Consensus       212 A----l~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~  287 (450)
                      |    +..+..+..+     .|+ +-.++.+-.-+.+++-.-|+.|+-++..+..+.+.....-...++++.++.+..++
T Consensus       345 AAg~CL~l~A~~~~D-----~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~  418 (859)
T KOG1241|consen  345 AAGVCLMLFAQCVGD-----DIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP  418 (859)
T ss_pred             HHHHHHHHHHHHhcc-----cch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc
Confidence            2    2222222222     232 24556665667788999999999999988777665544445567899999998865


Q ss_pred             CCccchhHHHHHHHHhccC-hHHHH-HHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hh-hHHH----Hhc--c
Q 041252          288 RHPNGILPGLSLLRSICLL-NEVRS-LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PE-GKLA----LKD--C  357 (450)
Q Consensus       288 ~~~~~~~~al~aL~~Ls~~-~~~~~-~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e-~r~~----i~~--~  357 (450)
                       +--++..++++|..++.+ ++-+. .....+.++.++.=|.+ .+.+..++++++.+|+.. .+ ....    ...  -
T Consensus       419 -sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y  496 (859)
T KOG1241|consen  419 -SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFY  496 (859)
T ss_pred             -hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhH
Confidence             466778999999999843 33222 22234566666666653 678999999999999843 11 1111    111  0


Q ss_pred             CCChHHHHHHHhcC---ChHHHHHHHHHHHHhcccCchhH
Q 041252          358 ANTIPNTVRLLMRV---SEDCTQYALSILWSICKIAPEEC  394 (450)
Q Consensus       358 ~g~i~~Lv~lL~~~---s~~~~e~A~~~L~~L~~~~~~~~  394 (450)
                      .-.|..|++.-.+.   ....+-.|-.+|..+-++++..+
T Consensus       497 ~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~v  536 (859)
T KOG1241|consen  497 EAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDV  536 (859)
T ss_pred             HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHH
Confidence            01233344433332   24567778888888888777543

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.0083  Score=55.74  Aligned_cols=54  Identities=19%  Similarity=0.342  Sum_probs=41.5

Q ss_pred             eeeCcCCCCCCCCC----------eeCCCCCcccHHHHHHHHhcC-CCCCCCcCCcCCCCCCcch
Q 041252           69 VFVCPISLEPMQDP----------VTLCTGQTYERSNILKWFSLG-RYTCPTTMQELWDDSVTPN  122 (450)
Q Consensus        69 ~~~Cpi~~~~m~dP----------v~~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~~l~~n  122 (450)
                      +-.|-+|++-+-+.          ..++|+|.|---||.-|.--| .++||.|++....+.+..|
T Consensus       224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn  288 (328)
T KOG1734|consen  224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN  288 (328)
T ss_pred             cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence            45788888765543          478999999999999998755 5789999887655444444

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.21  E-value=0.25  Score=50.94  Aligned_cols=164  Identities=18%  Similarity=0.214  Sum_probs=111.0

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCC---ccchhHHHHHHHHhccChHHHH
Q 041252          235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRH---PNGILPGLSLLRSICLLNEVRS  311 (450)
Q Consensus       235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~---~~~~~~al~aL~~Ls~~~~~~~  311 (450)
                      ...+.+++.+++...+..|..-|..|+.+.....+++ ...++..|.+++.++..   .......++++..+-.+.-.-.
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi-~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFI-RCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHH-hcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            5567788889999999998888888877766655544 44558899999988632   2234455555554432222222


Q ss_pred             HHHhcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCChh-hHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252          312 LVVSIGAVPQLVELL--PSLDPDCLQLALCILDALSSLPE-GKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK  388 (450)
Q Consensus       312 ~iv~~G~v~~Lv~lL--~~~~~~~~~~al~~L~~L~~~~e-~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  388 (450)
                      ..+....|...+.+.  .-.+..+...|+..|.++..++. -+..+.+ +--+..|++.+...+...+..|.+.+-++..
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~e-ev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAE-EVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHh-cCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            223323333333333  22356788999999999987755 5555555 6789999999999999999999999999888


Q ss_pred             cCchhHHHHHHh
Q 041252          389 IAPEECSSAAVD  400 (450)
Q Consensus       389 ~~~~~~~~~~~~  400 (450)
                      ..++..+..+.+
T Consensus       243 ~a~~~~R~~~~~  254 (713)
T KOG2999|consen  243 KAPDDKRFEMAK  254 (713)
T ss_pred             hCChHHHHHHHH
Confidence            777654444443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.15  E-value=0.026  Score=39.91  Aligned_cols=54  Identities=15%  Similarity=0.149  Sum_probs=43.7

Q ss_pred             hhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHH
Q 041252          207 AVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKL  260 (450)
Q Consensus       207 ~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~L  260 (450)
                      .++..|+.+|.+++........-.....++.|+.+|.+++.++|.+|+++|.+|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            478899999999876554444445578899999999988899999999999765

...

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.14  E-value=0.18  Score=52.90  Aligned_cols=111  Identities=15%  Similarity=0.094  Sum_probs=84.1

Q ss_pred             hhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 041252          224 ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI  303 (450)
Q Consensus       224 ~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L  303 (450)
                      +.-..|+..|+-..+|.-|..+-.++|.+|...+..|+.....-     ....+.-|+.+++++ ...++..|..+|..+
T Consensus       364 ~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F-----A~~aldfLvDMfNDE-~~~VRL~ai~aL~~I  437 (823)
T KOG2259|consen  364 EEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF-----AVRALDFLVDMFNDE-IEVVRLKAIFALTMI  437 (823)
T ss_pred             ccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            33456888999999999998888999999999999998654321     234678999999987 467888999999998


Q ss_pred             ccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252          304 CLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS  345 (450)
Q Consensus       304 s~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~  345 (450)
                      +.+-..     +..-++.+++.|.+.+.++++..-..|.+.-
T Consensus       438 s~~l~i-----~eeql~~il~~L~D~s~dvRe~l~elL~~~~  474 (823)
T KOG2259|consen  438 SVHLAI-----REEQLRQILESLEDRSVDVREALRELLKNAR  474 (823)
T ss_pred             HHHhee-----cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            876332     2334567777777778888887777776554

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.09  E-value=0.26  Score=51.96  Aligned_cols=172  Identities=15%  Similarity=0.121  Sum_probs=121.5

Q ss_pred             ChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh---hccC--CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCC
Q 041252          192 GVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT---NLMQ--PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF  266 (450)
Q Consensus       192 ~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~---~i~~--~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~  266 (450)
                      +.|.|..+|.+. +...++.|.++|..++.+....-   ..-.  .-.+|.++.+.++.++..|..|...+-...-... 
T Consensus       129 lLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~-  206 (885)
T KOG2023|consen  129 LLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT-  206 (885)
T ss_pred             HHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-
Confidence            367888999875 67888999999998876543211   1111  2358899999999999999999998876643322 


Q ss_pred             hhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHh--cCCHHHHHHhcCCCChhHHHHHHHHHHHh
Q 041252          267 RPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS--IGAVPQLVELLPSLDPDCLQLALCILDAL  344 (450)
Q Consensus       267 ~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~--~G~v~~Lv~lL~~~~~~~~~~al~~L~~L  344 (450)
                      ......-..+++.|+.+-.+. +++++++...+|..|-.....|  ++-  .++|+..+..-++.+.++.-.|+.....+
T Consensus       207 qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dk--l~phl~~IveyML~~tqd~dE~VALEACEFwla~  283 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDK--LVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL  283 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHh--cccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence            222334456888888887665 7999999999998886432222  332  46777788888888999999999999999


Q ss_pred             cCChhhHHHHhcc-CCChHHHHHHH
Q 041252          345 SSLPEGKLALKDC-ANTIPNTVRLL  368 (450)
Q Consensus       345 ~~~~e~r~~i~~~-~g~i~~Lv~lL  368 (450)
                      |..+--+..+..+ ...||.|++-|
T Consensus       284 aeqpi~~~~L~p~l~kliPvLl~~M  308 (885)
T KOG2023|consen  284 AEQPICKEVLQPYLDKLIPVLLSGM  308 (885)
T ss_pred             hcCcCcHHHHHHHHHHHHHHHHccC
Confidence            9988555555431 13566666543

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.05  E-value=3.9  Score=44.32  Aligned_cols=213  Identities=18%  Similarity=0.190  Sum_probs=127.7

Q ss_pred             ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHH
Q 041252          205 SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLV  284 (450)
Q Consensus       205 ~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL  284 (450)
                      +.-+...|+.+|.+++..+-.      +...|.+.++|++.++-+|..|+-+...+-.......+.     +++.--++|
T Consensus       120 nq~vVglAL~alg~i~s~Ema------rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL  188 (866)
T KOG1062|consen  120 NQYVVGLALCALGNICSPEMA------RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLL  188 (866)
T ss_pred             CeeehHHHHHHhhccCCHHHh------HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHH
Confidence            456778899999998865433      345788888999999999999998888775444333333     345556667


Q ss_pred             hcCCCccchhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC---hh-hH----HHHh
Q 041252          285 KNKRHPNGILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL---PE-GK----LALK  355 (450)
Q Consensus       285 ~~~~~~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~---~e-~r----~~i~  355 (450)
                      .++ |..+...++..+..+|. ++++-...-+  .++.||               .+|+++...   +| +-    .-|.
T Consensus       189 ~ek-~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV---------------~iLk~l~~~~yspeydv~gi~dPFL  250 (866)
T KOG1062|consen  189 CEK-HHGVLIAGLHLITELCKISPDALSYFRD--LVPSLV---------------KILKQLTNSGYSPEYDVHGISDPFL  250 (866)
T ss_pred             hhc-CCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHH---------------HHHHHHhcCCCCCccCccCCCchHH
Confidence            765 67888899998888884 3433333322  334444               444444432   11 00    0011


Q ss_pred             ccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH-HHhhc
Q 041252          356 DCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL-CSLNY  434 (450)
Q Consensus       356 ~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~-ls~~~  434 (450)
                      . - =|-.++++|..+.....+.-..+|..++.+....  +-+-.+=....+..++.-..++..+..|+.+|.- +....
T Consensus       251 Q-i-~iLrlLriLGq~d~daSd~M~DiLaqvatntdss--kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d  326 (866)
T KOG1062|consen  251 Q-I-RILRLLRILGQNDADASDLMNDILAQVATNTDSS--KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD  326 (866)
T ss_pred             H-H-HHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc--ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc
Confidence            1 0 0123455566666777777777787777655322  1111222333334444333456777777765544 55557


Q ss_pred             CCCccccccccccccC
Q 041252          435 TDTTFISKCKLTRTIQ  450 (450)
Q Consensus       435 ~~~~~i~~~~~~~~~~  450 (450)
                      .|..+++=-+|++++|
T Consensus       327 ~NirYvaLn~L~r~V~  342 (866)
T KOG1062|consen  327 NNIRYVALNMLLRVVQ  342 (866)
T ss_pred             cceeeeehhhHHhhhc
Confidence            7888888888887765

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=94.96  E-value=0.5  Score=45.67  Aligned_cols=222  Identities=16%  Similarity=0.151  Sum_probs=142.9

Q ss_pred             hhHHHHHHHHHhcCCCchhhhhc-cCCCchHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHH
Q 041252          207 AVGSEAVGVLVNLTLDSESKTNL-MQPAKVSLLVDMLNE--GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRL  283 (450)
Q Consensus       207 ~v~~~Al~~L~~Ls~~~~~k~~i-~~~g~i~~Lv~lL~~--~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~l  283 (450)
                      -.+--|+..|.++....+.|..+ .+...-..+++.+++  |..+.+-+..-+++.|+-.......+-.-...+.-|+.+
T Consensus       164 lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~i  243 (432)
T COG5231         164 LTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAI  243 (432)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            35566788888888888777654 445566777888875  468899999999999975544332222334678888888


Q ss_pred             HhcCCCccchhHHHHHHHHhcc--ChHHHHHHHhcCCHHHHHHhcCC---CChhHHHHH---HHHHH----HhcCCh---
Q 041252          284 VKNKRHPNGILPGLSLLRSICL--LNEVRSLVVSIGAVPQLVELLPS---LDPDCLQLA---LCILD----ALSSLP---  348 (450)
Q Consensus       284 L~~~~~~~~~~~al~aL~~Ls~--~~~~~~~iv~~G~v~~Lv~lL~~---~~~~~~~~a---l~~L~----~L~~~~---  348 (450)
                      ++......+.+-+++.+.|++.  +......+.-.|-+..-+++|..   ++++++..-   -..|.    .||.-+   
T Consensus       244 Vk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~  323 (432)
T COG5231         244 VKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYL  323 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            8865445577788888889884  34555566666655555666632   244333211   11111    122111   


Q ss_pred             ---------------------hhHHHHh-ccCCChHHHHHHHhcCChH-HHHHHHHHHHHhcccCchhHHHHHHhcChHH
Q 041252          349 ---------------------EGKLALK-DCANTIPNTVRLLMRVSED-CTQYALSILWSICKIAPEECSSAAVDAGLAA  405 (450)
Q Consensus       349 ---------------------e~r~~i~-~~~g~i~~Lv~lL~~~s~~-~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~  405 (450)
                                           .|-..+. +.-..+..|.++++...+. .-.-|+.=+..+....|+. ......-|+=.
T Consensus       324 ~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~-~~vl~Kyg~k~  402 (432)
T COG5231         324 NELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI-NAVLSKYGVKE  402 (432)
T ss_pred             HHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH-HHHHHHhhhHH
Confidence                                 1222222 2223567778888776554 4556777777777777753 34455789999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252          406 KLFLVIQSGCNPVLKQRSAELLKLC  430 (450)
Q Consensus       406 ~L~~ll~s~~~~~~k~~A~~lL~~l  430 (450)
                      .++.++.++ ++++|-.|...+..|
T Consensus       403 ~im~L~nh~-d~~VkfeAl~a~q~~  426 (432)
T COG5231         403 IIMNLINHD-DDDVKFEALQALQTC  426 (432)
T ss_pred             HHHHHhcCC-CchhhHHHHHHHHHH
Confidence            999999887 789999999888775

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.94  E-value=0.23  Score=51.88  Aligned_cols=237  Identities=18%  Similarity=0.169  Sum_probs=128.5

Q ss_pred             hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh---hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhh
Q 041252          193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK---TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPE  269 (450)
Q Consensus       193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k---~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~  269 (450)
                      |..++..|++. ...++..|+.+...|+.--.++   +.+...|.|  |-+-|....+++.-....++..+.+.......
T Consensus       606 vStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         606 VSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            34445566654 5677777776666554311111   111122222  33455666788877766777766544433322


Q ss_pred             HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHh-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-
Q 041252          270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS-IGAVPQLVELLPSLDPDCLQLALCILDALSSL-  347 (450)
Q Consensus       270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-  347 (450)
                      .--..|++|.|..+|+++ +..++.+....+..+|.+........| ...---|+++|.+.+.+++.+|...+..++.. 
T Consensus       683 qpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         683 QPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             CCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence            223357899999999987 788999999988888854432222222 12223578888888999999998888877653 


Q ss_pred             -hhh-------------H-HHHhc--------cCCChHHHHHHHhc----CChHHHHHHHHHHHHhcccCchhHHHHHHh
Q 041252          348 -PEG-------------K-LALKD--------CANTIPNTVRLLMR----VSEDCTQYALSILWSICKIAPEECSSAAVD  400 (450)
Q Consensus       348 -~e~-------------r-~~i~~--------~~g~i~~Lv~lL~~----~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~  400 (450)
                       |..             | ..+..        ...|.-.++-.|++    ....++.-.+.++..+...-. +....-+ 
T Consensus       762 GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig-~~s~dYv-  839 (975)
T COG5181         762 GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG-QASLDYV-  839 (975)
T ss_pred             CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH-HHHHHHH-
Confidence             211             1 11111        01111122222222    234556544444433322211 1111111 


Q ss_pred             cChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252          401 AGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD  436 (450)
Q Consensus       401 ~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~  436 (450)
                      --..|.|-+.|... ++.-|+-|+.+++.++.|-..
T Consensus       840 y~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~g  874 (975)
T COG5181         840 YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPG  874 (975)
T ss_pred             HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCC
Confidence            12334444555444 688889999999998888443

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=94.94  E-value=0.14  Score=41.30  Aligned_cols=60  Identities=13%  Similarity=0.154  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHhc-CChhhHHHHhccCCChHHHHHHHhc--CChHHHHHHHHHHHHhcccCchh
Q 041252          333 CLQLALCILDALS-SLPEGKLALKDCANTIPNTVRLLMR--VSEDCTQYALSILWSICKIAPEE  393 (450)
Q Consensus       333 ~~~~al~~L~~L~-~~~e~r~~i~~~~g~i~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~  393 (450)
                      .+...+.+|.||+ .+++++..+++ -||||.++..-..  .+|-.+|.|+.++.+||..+++.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eN   64 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPEN   64 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHH
Confidence            3566788999999 45899999998 7899999988644  46899999999999999998753

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=94.89  E-value=4.3  Score=40.32  Aligned_cols=208  Identities=10%  Similarity=0.072  Sum_probs=141.7

Q ss_pred             ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-C----hhhHh-hh-hhHHHHHHHHHhcCCCccchhHHHHHHH
Q 041252          229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD-F----RPEIV-SS-HRLLIGLMRLVKNKRHPNGILPGLSLLR  301 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~-~----~~~~~-~~-~g~l~~Lv~lL~~~~~~~~~~~al~aL~  301 (450)
                      +...+.+..|+..|..-+-+.|..++.+..++..... .    ..+.+ .. ..++..|+   ..-.+++.--.+...|+
T Consensus        72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~---~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILL---RGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHH---HGGGSTTTHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHH---HHhcCccccchHHHHHH
Confidence            3456788999999998899999999999998863321 1    11222 22 23344443   33235667777878888


Q ss_pred             HhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc-CChhhHHHHhcc--CCChHHHHHHHhcCChHHHHH
Q 041252          302 SICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS-SLPEGKLALKDC--ANTIPNTVRLLMRVSEDCTQY  378 (450)
Q Consensus       302 ~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~e~r~~i~~~--~g~i~~Lv~lL~~~s~~~~e~  378 (450)
                      ....++.....+.+...+-.+.+.+..++-++...|..++..|- .+..--..+...  ...+....++|.+.+--++..
T Consensus       149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq  228 (335)
T PF08569_consen  149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ  228 (335)
T ss_dssp             HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred             HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence            88899888888888889999999999999999999999999854 555554554431  124557778888888899999


Q ss_pred             HHHHHHHhcccCchhH--HHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCccc
Q 041252          379 ALSILWSICKIAPEEC--SSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFI  440 (450)
Q Consensus       379 A~~~L~~L~~~~~~~~--~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~i  440 (450)
                      ++..|..+-.......  .+-+-...-+..++.+|++. +..++-.|--+.|++-.|...++-|
T Consensus       229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I  291 (335)
T PF08569_consen  229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPI  291 (335)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHH
T ss_pred             hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHH
Confidence            9999999866543221  12222334456667777776 7889999999999998886665544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=0.02  Score=54.03  Aligned_cols=46  Identities=28%  Similarity=0.425  Sum_probs=39.2

Q ss_pred             eCcCCC-CCCCCCe----eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           71 VCPISL-EPMQDPV----TLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        71 ~Cpi~~-~~m~dPv----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      -||+|+ +.+..|-    +-+|||+-|.+|...-|..|...||.|+..+..
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk   52 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK   52 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence            399998 6777775    237999999999999999999999999987654

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.83  E-value=1  Score=42.53  Aligned_cols=174  Identities=17%  Similarity=0.160  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC-C---hhhHHHHHHHHHhcCCCc--hhhhhccCCCchHHH
Q 041252          165 ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT-S---HAVGSEAVGVLVNLTLDS--ESKTNLMQPAKVSLL  238 (450)
Q Consensus       165 ~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~-~---~~v~~~Al~~L~~Ls~~~--~~k~~i~~~g~i~~L  238 (450)
                      -...|+.-|+-++. |++.|..+.++...--|-.+|.... +   +-.+-.+++++..|...+  +.-..+.+...+|..
T Consensus        66 RVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplc  144 (262)
T PF04078_consen   66 RVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLC  144 (262)
T ss_dssp             HHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHH
T ss_pred             HHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHH
Confidence            44557777777775 7889999999997666777875431 1   235556788888877643  556677889999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh-------hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHH
Q 041252          239 VDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV-------SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS  311 (450)
Q Consensus       239 v~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~-------~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~  311 (450)
                      ++.+..|+.-.|.-|+.++..+-.++.....+-       .-...+..++.-+....++...+...++-..|+.++..|.
T Consensus       145 Lr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~  224 (262)
T PF04078_consen  145 LRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRARE  224 (262)
T ss_dssp             HHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHH
Confidence            999999999999999999998865543322221       1123445555444444467788999999999999999888


Q ss_pred             HHHhcCCHHHHHHhcCC--------CChhHHHHHHHHHHHh
Q 041252          312 LVVSIGAVPQLVELLPS--------LDPDCLQLALCILDAL  344 (450)
Q Consensus       312 ~iv~~G~v~~Lv~lL~~--------~~~~~~~~al~~L~~L  344 (450)
                      .+..     .|=+.|++        .|+.++..--..+.|+
T Consensus       225 aL~~-----~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  225 ALRQ-----CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             HHHH-----HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred             HHHH-----hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            7774     22233433        2555555555555554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.82  E-value=1.3  Score=44.46  Aligned_cols=237  Identities=19%  Similarity=0.227  Sum_probs=131.3

Q ss_pred             hcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHH-HHHHHHHhcCCCchhh
Q 041252          149 GRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGS-EAVGVLVNLTLDSESK  226 (450)
Q Consensus       149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~-~Al~~L~~Ls~~~~~k  226 (450)
                      +-+..+++.|.++ +...|..++-.|...+. +++.|..+.+.|.+..++..+....+..+.. .++.++.-++.+..+-
T Consensus        21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~   99 (361)
T PF07814_consen   21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM   99 (361)
T ss_pred             HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence            4577788888743 44678888888877775 6789999999999999999885433332333 3444555566665555


Q ss_pred             hhccCCCchHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc------C--CCccchhHHH
Q 041252          227 TNLMQPAKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN------K--RHPNGILPGL  297 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~------~--~~~~~~~~al  297 (450)
                      ..+-+.+....++.++.-. ..+......      ..........  ....+...-..+..      .  .....+-.|+
T Consensus       100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~--~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lal  171 (361)
T PF07814_consen  100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKV--QQKSRSLCKELLSSGSSWKSPKPPELSPQTLAL  171 (361)
T ss_pred             hhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHH--HHHHHHHHHHHHhccccccccCCcccccccHHH
Confidence            5555667777778877611 000000000      0000000000  00011111111100      0  0112233445


Q ss_pred             HHHHHhc---------------cChHHHHHHHhcCCHHHHHHhcCC----C------------ChhHHHHHHHHHHHhcC
Q 041252          298 SLLRSIC---------------LLNEVRSLVVSIGAVPQLVELLPS----L------------DPDCLQLALCILDALSS  346 (450)
Q Consensus       298 ~aL~~Ls---------------~~~~~~~~iv~~G~v~~Lv~lL~~----~------------~~~~~~~al~~L~~L~~  346 (450)
                      .+|-.++               ..+-.|..+.+.|++..+++++.+    .            +....+.++.+|.+.+-
T Consensus       172 l~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~  251 (361)
T PF07814_consen  172 LALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTF  251 (361)
T ss_pred             HHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHh
Confidence            5555552               112357778889999999999841    1            12456788999998874


Q ss_pred             C-hhhHHHHhccC-CChHHHHHHHhc-CC---hHHHHHHHHHHHHhcccCchhH
Q 041252          347 L-PEGKLALKDCA-NTIPNTVRLLMR-VS---EDCTQYALSILWSICKIAPEEC  394 (450)
Q Consensus       347 ~-~e~r~~i~~~~-g~i~~Lv~lL~~-~s---~~~~e~A~~~L~~L~~~~~~~~  394 (450)
                      . ++++..+..+. +.++.+...+.. ..   ......++++|.|++.++++.+
T Consensus       252 ~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c  305 (361)
T PF07814_consen  252 LSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSAC  305 (361)
T ss_pred             cCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccch
Confidence            3 56666655422 233333333332 22   3445789999999999987543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.81  E-value=0.41  Score=45.20  Aligned_cols=193  Identities=19%  Similarity=0.125  Sum_probs=117.0

Q ss_pred             CCHHHHHHHHHHHHHHhccCCC---hhhHh-hhhhHHHHHHHHHhcC----CCc-------cchhHHHHHHHHhccChHH
Q 041252          245 GSVETKINCTRLIEKLMEEKDF---RPEIV-SSHRLLIGLMRLVKNK----RHP-------NGILPGLSLLRSICLLNEV  309 (450)
Q Consensus       245 ~~~~~~~~aa~~L~~La~~~~~---~~~~~-~~~g~l~~Lv~lL~~~----~~~-------~~~~~al~aL~~Ls~~~~~  309 (450)
                      .+++.|++|   |.+|+...+.   ..-.+ .+-|.+..|++=+-+-    ..+       +-+.+|+..|.-+++|++.
T Consensus         7 ~~~~~Re~A---l~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpet   83 (262)
T PF04078_consen    7 CNPETRENA---LLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPET   83 (262)
T ss_dssp             SSHHHHHHH---HHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTT
T ss_pred             cCcchHHHH---HHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHH
Confidence            357778874   5555543332   22222 4557666665532210    011       2234788888899999999


Q ss_pred             HHHHHhcCCHHHHHHhcCCCC-----hhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHH
Q 041252          310 RSLVVSIGAVPQLVELLPSLD-----PDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSI  382 (450)
Q Consensus       310 ~~~iv~~G~v~~Lv~lL~~~~-----~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~  382 (450)
                      |..+.++...-.|..+|...+     +.++-.+++++..|.+.  +|.-.-+.+ ...||..++.|..+++-.|..|.-+
T Consensus        84 r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-tEiiplcLr~me~GselSKtvAtfI  162 (262)
T PF04078_consen   84 RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-TEIIPLCLRIMEFGSELSKTVATFI  162 (262)
T ss_dssp             HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-TTHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred             HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-hchHHHHHHHHHhccHHHHHHHHHH
Confidence            999999998887888874432     56788899999999975  445555566 7899999999999999999999988


Q ss_pred             HHHhcccCch-------hHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCccccc
Q 041252          383 LWSICKIAPE-------ECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISK  442 (450)
Q Consensus       383 L~~L~~~~~~-------~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~i~~  442 (450)
                      +..+-..+..       ..+-.++.. ++..++.-+....+++.=+.....---++.|.+....+.+
T Consensus       163 lqKIL~dd~GL~yiC~t~eRf~av~~-vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  163 LQKILLDDVGLNYICQTAERFFAVAM-VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HHHHHHSHHHHHHHTSSHHHHHHHHH-HHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             HHHHHcchhHHHHHhcCHHHHHHHHH-HHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            8876443311       001112222 2333333333333666666666655556666554444443

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=94.78  E-value=0.46  Score=45.02  Aligned_cols=95  Identities=22%  Similarity=0.287  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcC-CCChhHHHHHHHHHHHh-cCChhhHHHHhccCCChHHHHHHHh
Q 041252          293 ILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLP-SLDPDCLQLALCILDAL-SSLPEGKLALKDCANTIPNTVRLLM  369 (450)
Q Consensus       293 ~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~-~~~~~~~~~al~~L~~L-~~~~e~r~~i~~~~g~i~~Lv~lL~  369 (450)
                      ...|+..|.-++ .|+..|..+.+..++..|+++|+ +.++.++..++.+|-.+ ..++.|...|.+ .+|+..++.+++
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~-~~Gl~~v~~llk  186 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEE-LNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHH-hCCHHHHHHHHc
Confidence            456778888888 78889999999999999999994 45688888888877665 577999999988 799999999998


Q ss_pred             cCC--hHHHHHHHHHHHHhcc
Q 041252          370 RVS--EDCTQYALSILWSICK  388 (450)
Q Consensus       370 ~~s--~~~~e~A~~~L~~L~~  388 (450)
                      +.+  .+++-..+..|+....
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             cccccHHHhHHHHHHHHHHHc
Confidence            764  5777788888876543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=94.57  E-value=0.035  Score=41.80  Aligned_cols=44  Identities=23%  Similarity=0.469  Sum_probs=35.1

Q ss_pred             eeCcCCCCCCCC----CeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252           70 FVCPISLEPMQD----PVTL-CTGQTYERSNILKWFSLGRYTCPTTMQEL  114 (450)
Q Consensus        70 ~~Cpi~~~~m~d----Pv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l  114 (450)
                      =+||-|+--|..    |++- .|.|.|--.||.+|+.. ...||++++++
T Consensus        32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w   80 (88)
T COG5194          32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTW   80 (88)
T ss_pred             CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCcee
Confidence            358888876631    5543 59999999999999997 67899999875

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.34  E-value=0.58  Score=42.52  Aligned_cols=83  Identities=12%  Similarity=-0.040  Sum_probs=65.3

Q ss_pred             hhHHHHHHHHHhcC-----CCccchhHHHHHHHHhccChHHHHHHHhc--CC--HHHHHHhcCCCChhHHHHHHHHHHHh
Q 041252          274 HRLLIGLMRLVKNK-----RHPNGILPGLSLLRSICLLNEVRSLVVSI--GA--VPQLVELLPSLDPDCLQLALCILDAL  344 (450)
Q Consensus       274 ~g~l~~Lv~lL~~~-----~~~~~~~~al~aL~~Ls~~~~~~~~iv~~--G~--v~~Lv~lL~~~~~~~~~~al~~L~~L  344 (450)
                      ...+..|+..+..+     +...-....+..|.|++..++.|..+.+.  +.  +..|+.++...+..-+..++++|+|+
T Consensus        51 ~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc  130 (192)
T PF04063_consen   51 GFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC  130 (192)
T ss_pred             HHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence            45788888887762     12334567888999999999999999973  45  77888888877888889999999999


Q ss_pred             cCChhhHHHHhc
Q 041252          345 SSLPEGKLALKD  356 (450)
Q Consensus       345 ~~~~e~r~~i~~  356 (450)
                      |-..+....+..
T Consensus       131 cFd~~~H~~LL~  142 (192)
T PF04063_consen  131 CFDTDSHEWLLS  142 (192)
T ss_pred             hccHhHHHHhcC
Confidence            987777777765

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.29  E-value=0.3  Score=44.37  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=81.9

Q ss_pred             CCCChhHHHHHHHHHHHhcCChhhHHHHhcc---------------CCChHHHHHHHhcC------ChHHHHHHHHHHHH
Q 041252          327 PSLDPDCLQLALCILDALSSLPEGKLALKDC---------------ANTIPNTVRLLMRV------SEDCTQYALSILWS  385 (450)
Q Consensus       327 ~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~---------------~g~i~~Lv~lL~~~------s~~~~e~A~~~L~~  385 (450)
                      .+.+......++.+|.||+..+++...+.+.               ...+..|++.+..+      ...--.+.+.+|.|
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            3455668889999999999999888865431               23677888888772      24556889999999


Q ss_pred             hcccCchhHHHHHHh--cCh--HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCcc
Q 041252          386 ICKIAPEECSSAAVD--AGL--AAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTF  439 (450)
Q Consensus       386 L~~~~~~~~~~~~~~--~G~--i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~  439 (450)
                      +++..  +.++...+  .+.  +..|+-+.++. +...|..++.++|+|........+
T Consensus        85 lS~~~--~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~  139 (192)
T PF04063_consen   85 LSQLP--EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEW  139 (192)
T ss_pred             hcCCH--HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHH
Confidence            99876  34455553  445  78888888888 788889999999999988554333

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=94.27  E-value=0.057  Score=37.43  Aligned_cols=41  Identities=20%  Similarity=0.431  Sum_probs=31.8

Q ss_pred             eCcCCCC--CCCCCeeCCCC-----CcccHHHHHHHHhc-CCCCCCCcC
Q 041252           71 VCPISLE--PMQDPVTLCTG-----QTYERSNILKWFSL-GRYTCPTTM  111 (450)
Q Consensus        71 ~Cpi~~~--~m~dPv~~~~g-----~ty~r~~I~~~~~~-~~~~cP~~~  111 (450)
                      .|-||++  --.+|.+.||.     +.|=++|+.+|+.. +..+||.|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4788886  44578888875     67899999999975 356899984

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.27  E-value=0.22  Score=37.62  Aligned_cols=64  Identities=17%  Similarity=0.102  Sum_probs=56.5

Q ss_pred             hhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCC-CChhHHHHHHHHHHHhcCChhhHHHHhc
Q 041252          293 ILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPS-LDPDCLQLALCILDALSSLPEGKLALKD  356 (450)
Q Consensus       293 ~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~e~r~~i~~  356 (450)
                      .+++++|+.++++.+.....+-+.++++.++++... +...++--|..+|..++.+.++.+.+.+
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~   68 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE   68 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence            578999999999988887777788999999999854 4678999999999999999999988865

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.22  E-value=0.043  Score=37.58  Aligned_cols=43  Identities=19%  Similarity=0.211  Sum_probs=22.4

Q ss_pred             CcCCCCCCC--CCeeC--CCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252           72 CPISLEPMQ--DPVTL--CTGQTYERSNILKWFSLGRYTCPTTMQEL  114 (450)
Q Consensus        72 Cpi~~~~m~--dPv~~--~~g~ty~r~~I~~~~~~~~~~cP~~~~~l  114 (450)
                      ||+|-+.|.  |--..  +||+..||.|..+-.+.++..||-|++++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789988883  21223  58999999999888876678899999875

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=94.08  E-value=2.1  Score=46.60  Aligned_cols=100  Identities=17%  Similarity=0.152  Sum_probs=52.4

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHH
Q 041252          319 VPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAA  398 (450)
Q Consensus       319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~  398 (450)
                      +..+..=+.++++.++..|+.+|..|-. +    ++.+  ..++++.+++.+.++.+++.|+-++..+-+.++    ...
T Consensus        94 vNti~kDl~d~N~~iR~~AlR~ls~l~~-~----el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~----~l~  162 (757)
T COG5096          94 VNTIQKDLQDPNEEIRGFALRTLSLLRV-K----ELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK----DLY  162 (757)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHhcCh-H----HHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH----hhh
Confidence            3445555555666666655555554321 1    1221  244566666666666666666666666655443    123


Q ss_pred             HhcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252          399 VDAGLAAKLFLVIQSGCNPVLKQRSAELLKLC  430 (450)
Q Consensus       399 ~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l  430 (450)
                      .+.|.+..+..++... +|....+|...|+.+
T Consensus       163 ~~~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i  193 (757)
T COG5096         163 HELGLIDILKELVADS-DPIVIANALASLAEI  193 (757)
T ss_pred             hcccHHHHHHHHhhCC-CchHHHHHHHHHHHh
Confidence            3455555555555443 555666665555543

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.02  E-value=11  Score=41.90  Aligned_cols=219  Identities=17%  Similarity=0.209  Sum_probs=117.2

Q ss_pred             hcHHHHHHHhhccc----hHHHHH-HHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC---CCC----hhhHHHHHHHH
Q 041252          149 GRASELLGTLKKVK----GQARVQ-ALKELHQIAAAHASARKTMVDEGGVALISSLLGP---FTS----HAVGSEAVGVL  216 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~----~~~~~~-Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~---~~~----~~v~~~Al~~L  216 (450)
                      +.+..++..|.+..    ...... .++-|+..+ .-+.||+.+.+.|+++.|+..|..   ...    .++.+..+.++
T Consensus       117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii  195 (802)
T PF13764_consen  117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII  195 (802)
T ss_pred             CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence            45666666665421    222333 444444444 447899999999999999987741   112    35555555555


Q ss_pred             HhcCCCch---h---hhhccCC-------CchHHHHHHhcCC----CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHH
Q 041252          217 VNLTLDSE---S---KTNLMQP-------AKVSLLVDMLNEG----SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIG  279 (450)
Q Consensus       217 ~~Ls~~~~---~---k~~i~~~-------g~i~~Lv~lL~~~----~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~  279 (450)
                      -.+.....   .   .......       .-+..+++.+.+.    ++.+....+.+|-.|+.+++...+.+.+  .+.+
T Consensus       196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~p  273 (802)
T PF13764_consen  196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFKP  273 (802)
T ss_pred             HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHHH
Confidence            44322111   1   1111111       1255666666543    5778888888998887665433222111  1122


Q ss_pred             HHHHHhcC-CCccchhHHHHHHHHhcc-------ChHHHHHHHhcCCHHHHHHhcCCC--------C--------hhHHH
Q 041252          280 LMRLVKNK-RHPNGILPGLSLLRSICL-------LNEVRSLVVSIGAVPQLVELLPSL--------D--------PDCLQ  335 (450)
Q Consensus       280 Lv~lL~~~-~~~~~~~~al~aL~~Ls~-------~~~~~~~iv~~G~v~~Lv~lL~~~--------~--------~~~~~  335 (450)
                      .+++=+-. .+..--..-+..+..++.       ....|..+++.|.+...++.|...        +        .....
T Consensus       274 ~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp  353 (802)
T PF13764_consen  274 YLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP  353 (802)
T ss_pred             hcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence            22211100 011111233555555541       134688899999999888887321        1        23456


Q ss_pred             HHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCC
Q 041252          336 LALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVS  372 (450)
Q Consensus       336 ~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s  372 (450)
                      .++..|.-|+.....-+.+.. ..+| ++++.|...+
T Consensus       354 ~iL~lL~GLa~gh~~tQ~~~~-~~~l-~~lH~LEqvs  388 (802)
T PF13764_consen  354 YILRLLRGLARGHEPTQLLIA-EQLL-PLLHRLEQVS  388 (802)
T ss_pred             HHHHHHHHHHhcCHHHHHHHH-hhHH-HHHHHhhcCC
Confidence            788888888876443333344 4677 5555555543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.01  E-value=1.1  Score=48.34  Aligned_cols=217  Identities=12%  Similarity=0.088  Sum_probs=133.7

Q ss_pred             HHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHH-hcCCCchhhhhccCCCchHHHHHHhcCCCHHH--HHHHHHHHH
Q 041252          182 SARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLV-NLTLDSESKTNLMQPAKVSLLVDMLNEGSVET--KINCTRLIE  258 (450)
Q Consensus       182 ~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~-~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~--~~~aa~~L~  258 (450)
                      .-|...++.|+...|+++.... .....-.+-.+|. .++...+     .....++++...+.+. ...  .-.+..++.
T Consensus       495 ~~~~~~Ik~~~~~aLlrl~~~q-~e~akl~~~~aL~~~i~f~~~-----~~~~v~~~~~s~~~~d-~~~~en~E~L~alt  567 (748)
T KOG4151|consen  495 YERAKKIKPGGYEALLRLGQQQ-FEEAKLKWYHALAGKIDFPGE-----RSYEVVKPLDSALHND-EKGLENFEALEALT  567 (748)
T ss_pred             HhcCccccccHHHHHHHHHHHh-chHHHHHHHHHHhhhcCCCCC-----chhhhhhhhcchhhhh-HHHHHHHHHHHHhh
Confidence            3455667889999999987653 4455555555655 1211100     0123444444444322 222  234566788


Q ss_pred             HHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH-HHHHHHh-cCCHHHHHHhcCCCChhHHHH
Q 041252          259 KLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE-VRSLVVS-IGAVPQLVELLPSLDPDCLQL  336 (450)
Q Consensus       259 ~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~-~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~  336 (450)
                      ||++.++..++-+...-.++.+-.++..+ ++..+.+++..+.||..++. ....+++ ...++.....+...+....-.
T Consensus       568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA  646 (748)
T KOG4151|consen  568 NLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA  646 (748)
T ss_pred             cccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence            88876554443343333344444444444 67889999999999997766 4455666 467777777776667777777


Q ss_pred             HHHHHHHhcCChhhHHH-HhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHH
Q 041252          337 ALCILDALSSLPEGKLA-LKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKL  407 (450)
Q Consensus       337 al~~L~~L~~~~e~r~~-i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L  407 (450)
                      +.+++..+....++... +.+...+...++.++++....++...+....++..... +..........++.+
T Consensus       647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~-ei~~~~~~~~~~~~l  717 (748)
T KOG4151|consen  647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALF-EIAEKIFETEVMELL  717 (748)
T ss_pred             ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHH-HHHHHhccchHHHHH
Confidence            78888877766655444 44435678899999999999999988888888554332 333444444444443

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.84  E-value=0.033  Score=56.04  Aligned_cols=51  Identities=18%  Similarity=0.390  Sum_probs=37.7

Q ss_pred             CCCeeeCcCCCCCCC-----------------CCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           66 IPSVFVCPISLEPMQ-----------------DPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        66 ~p~~~~Cpi~~~~m~-----------------dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      +...--|+||.....                 +=.++||.|.|-++|+++|.+.-.-.||.||++++.
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            344457999975422                 122458999999999999998545579999998864

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=93.83  E-value=2.2  Score=46.50  Aligned_cols=140  Identities=14%  Similarity=0.111  Sum_probs=90.5

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      ...+.+++.+..-+.+.++----.|...++.+++  .++.   ++..+..=+++. ++.++..|+.++..+-..+-    
T Consensus        55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lL---avNti~kDl~d~-N~~iR~~AlR~ls~l~~~el----  124 (757)
T COG5096          55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALL---AVNTIQKDLQDP-NEEIRGFALRTLSLLRVKEL----  124 (757)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHH---HHHHHHhhccCC-CHHHHHHHHHHHHhcChHHH----
Confidence            3445555555544555555555555666655552  1111   244555555554 67888888888875543221    


Q ss_pred             ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                        -...++++.+.+.++++.+|..|+-++..+-+-+.   ....+.|.+..+..++.+. +|.+..+|+.+|..+.
T Consensus       125 --~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~  194 (757)
T COG5096         125 --LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADS-DPIVIANALASLAEID  194 (757)
T ss_pred             --HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCC-CchHHHHHHHHHHHhc
Confidence              13457888888888999999999999988854332   2345667777777777665 7888889988888876

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=93.80  E-value=0.46  Score=38.11  Aligned_cols=92  Identities=16%  Similarity=0.137  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc
Q 041252          335 QLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS  413 (450)
Q Consensus       335 ~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s  413 (450)
                      ..++..|...+.. +..-....+  -.+++++..+...+.+++.+|+.+|.++++...++...  .=..++..|..++..
T Consensus         4 ~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~--~f~~IF~~L~kl~~D   79 (97)
T PF12755_consen    4 KGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP--YFNEIFDALCKLSAD   79 (97)
T ss_pred             hHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcC
Confidence            3445555555432 222223332  47889999999999999999999999999876533211  124577777887766


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 041252          414 GCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       414 ~~~~~~k~~A~~lL~~ls  431 (450)
                      . ++.+|..|.-+-+++.
T Consensus        80 ~-d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   80 P-DENVRSAAELLDRLLK   96 (97)
T ss_pred             C-chhHHHHHHHHHHHhc
Confidence            5 7888888877777764

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.70  E-value=0.68  Score=49.67  Aligned_cols=145  Identities=14%  Similarity=0.133  Sum_probs=95.8

Q ss_pred             cchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch
Q 041252          145 EDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE  224 (450)
Q Consensus       145 ~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~  224 (450)
                      .|+....++++....-.+.+.+.-.--.|.+-+...++.     ..+++..++.=-.+. +..++..|++.+..+..+.-
T Consensus        45 ~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~-np~iR~lAlrtm~~l~v~~i  118 (734)
T KOG1061|consen   45 KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDP-NPLIRALALRTMGCLRVDKI  118 (734)
T ss_pred             cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCC-CHHHHHHHhhceeeEeehHH
Confidence            344555666766666555555555555566666555532     122344333333332 55677777777665443221


Q ss_pred             hhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          225 SKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       225 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                      .      .-...+|...++.+++.+|..|+.....+-..+   .+.+...|++..|-.++.+. ++.++.+|+.+|..+.
T Consensus       119 ~------ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~  188 (734)
T KOG1061|consen  119 T------EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIH  188 (734)
T ss_pred             H------HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence            1      234778889999999999999998888884333   44567889999999999975 7899999999999997


Q ss_pred             c
Q 041252          305 L  305 (450)
Q Consensus       305 ~  305 (450)
                      .
T Consensus       189 e  189 (734)
T KOG1061|consen  189 E  189 (734)
T ss_pred             H
Confidence            3

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.64  E-value=3.6  Score=41.65  Aligned_cols=130  Identities=18%  Similarity=0.196  Sum_probs=95.1

Q ss_pred             hhccC-CCchHHHHHHhcCC---CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh-cC--CCccchhHHHHH
Q 041252          227 TNLMQ-PAKVSLLVDMLNEG---SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK-NK--RHPNGILPGLSL  299 (450)
Q Consensus       227 ~~i~~-~g~i~~Lv~lL~~~---~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~-~~--~~~~~~~~al~a  299 (450)
                      +.+++ ...+..|..++.+.   -+.+-..|+.++..+...++..-.++.+.|+++.++..+. .+  .+.++....-.+
T Consensus        99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~  178 (379)
T PF06025_consen   99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV  178 (379)
T ss_pred             ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence            34556 55566666677654   3677788899999988777777778899999999999988 43  234445555678


Q ss_pred             HHHhccChHHHHHHHhcCCHHHHHHhcCCCC-------hhHHHHHHHHHHHhcCC-hhhHHHHhc
Q 041252          300 LRSICLLNEVRSLVVSIGAVPQLVELLPSLD-------PDCLQLALCILDALSSL-PEGKLALKD  356 (450)
Q Consensus       300 L~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~-------~~~~~~al~~L~~L~~~-~e~r~~i~~  356 (450)
                      |..||.+......+.+.++++.+++++.+.+       .+.....-..+..|..+ |.-|..+.+
T Consensus       179 l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  179 LSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            8999999999999999999999999997642       13344444556667665 666666654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.49  E-value=0.38  Score=39.96  Aligned_cols=70  Identities=14%  Similarity=0.119  Sum_probs=55.7

Q ss_pred             hcHHHHHHHhh-ccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhc
Q 041252          149 GRASELLGTLK-KVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNL  219 (450)
Q Consensus       149 ~~i~~Lv~~L~-~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~L  219 (450)
                      ..+..|+..|. +.++.....|+..|..+++..+..|..+-+.|+-..+..++.+. +.+++.+|+.++..+
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKL  113 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence            35677888884 44556677799999999999998888888889888899999886 899999999988653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.33  E-value=1.9  Score=46.63  Aligned_cols=196  Identities=15%  Similarity=0.135  Sum_probs=128.9

Q ss_pred             CCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHH-HHhccCCChhhHhhhhhHHHHHHHHHhcCCCccc--hhHH
Q 041252          220 TLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIE-KLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNG--ILPG  296 (450)
Q Consensus       220 s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~-~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~--~~~a  296 (450)
                      +....-+...+++|+...|.++...+..+.+..+..+|. .+.-...      .....++.+...+...  ...  .-.+
T Consensus       491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~------~~~~v~~~~~s~~~~d--~~~~en~E~  562 (748)
T KOG4151|consen  491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE------RSYEVVKPLDSALHND--EKGLENFEA  562 (748)
T ss_pred             hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC------chhhhhhhhcchhhhh--HHHHHHHHH
Confidence            334455677889999999999999888999998888887 2211110      1233455555554432  122  2377


Q ss_pred             HHHHHHhccC-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHH-HHhccCCChHHHHHHHhcCChH
Q 041252          297 LSLLRSICLL-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKL-ALKDCANTIPNTVRLLMRVSED  374 (450)
Q Consensus       297 l~aL~~Ls~~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~-~i~~~~g~i~~Lv~lL~~~s~~  374 (450)
                      +.+|.||++. +..|..++..-+++-+-+++.+.++..+..++..+.||.-++---. .+++...+.+.....+..-.+.
T Consensus       563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~  642 (748)
T KOG4151|consen  563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK  642 (748)
T ss_pred             HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence            8899999864 4567788876666666666777889999999999999998765444 3444356788887777765566


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHH
Q 041252          375 CTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSA  424 (450)
Q Consensus       375 ~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~  424 (450)
                      ....+++++..++....+.+.....-......+..+++++ ++.++....
T Consensus       643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl  691 (748)
T KOG4151|consen  643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGL  691 (748)
T ss_pred             HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhh
Confidence            6666777776666655433432111233457777777777 555554443

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.27  E-value=0.028  Score=41.88  Aligned_cols=50  Identities=26%  Similarity=0.453  Sum_probs=36.4

Q ss_pred             CCCeeeCcCCCCCCCC-CeeC-CCCCcccHHHHHHHHhc--CCCCCCCcCCcCC
Q 041252           66 IPSVFVCPISLEPMQD-PVTL-CTGQTYERSNILKWFSL--GRYTCPTTMQELW  115 (450)
Q Consensus        66 ~p~~~~Cpi~~~~m~d-Pv~~-~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~  115 (450)
                      .|-+-.||-|+-.=.| |.+. -|-|.|-+.||.+|+..  +...||+||+.+.
T Consensus        28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            3444567777655444 7665 49999999999999974  2457999998754

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.09  E-value=7.8  Score=36.39  Aligned_cols=139  Identities=22%  Similarity=0.297  Sum_probs=86.5

Q ss_pred             hHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh
Q 041252          193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV  271 (450)
Q Consensus       193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~  271 (450)
                      ++.|+.-+....+...+...+.+|..++.++ .+.     +-.+..|+.+.+.+..+.+.-+...+..+-..++.   .+
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r---~f   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR---HF   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch---HH
Confidence            3445554555557788899999999998877 332     33466666666666777666666677766544431   11


Q ss_pred             hhhhHHHHHHHHH--h-----cCCC--ccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhc-CCCChhHHHHHHHHH
Q 041252          272 SSHRLLIGLMRLV--K-----NKRH--PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL-PSLDPDCLQLALCIL  341 (450)
Q Consensus       272 ~~~g~l~~Lv~lL--~-----~~~~--~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL-~~~~~~~~~~al~~L  341 (450)
                         +.+..++..+  +     .+.+  .......+.++..+|...+++    -...++.+..+| .+.++..+..++.+|
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               4455554441  1     1111  112234455777888554442    223567788888 777889999999999


Q ss_pred             HHhcC
Q 041252          342 DALSS  346 (450)
Q Consensus       342 ~~L~~  346 (450)
                      ..||.
T Consensus       147 ~~Lc~  151 (234)
T PF12530_consen  147 APLCE  151 (234)
T ss_pred             HHHHH
Confidence            99993

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.09  E-value=15  Score=39.60  Aligned_cols=69  Identities=22%  Similarity=0.246  Sum_probs=48.2

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh-cCChHHHHHHHHHHHHhcccC
Q 041252          319 VPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM-RVSEDCTQYALSILWSICKIA  390 (450)
Q Consensus       319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~  390 (450)
                      +..|-.+|.+....++-.|+..+..|+++.....++..|   ...++..|. ..+..+++.|+..|..+|..+
T Consensus       331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii~sLkterDvSirrravDLLY~mcD~~  400 (938)
T KOG1077|consen  331 VNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QDTIINSLKTERDVSIRRRAVDLLYAMCDVS  400 (938)
T ss_pred             HHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence            344555555555566666666677777766666666653   667777777 446788999999999998865

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.01  E-value=0.073  Score=52.52  Aligned_cols=48  Identities=19%  Similarity=0.293  Sum_probs=39.4

Q ss_pred             CCeeeCcCCCCCCCCCe-------e-CCCCCcccHHHHHHHHhcC------CCCCCCcCCcC
Q 041252           67 PSVFVCPISLEPMQDPV-------T-LCTGQTYERSNILKWFSLG------RYTCPTTMQEL  114 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dPv-------~-~~~g~ty~r~~I~~~~~~~------~~~cP~~~~~l  114 (450)
                      -.+..|-||++.-.++.       + ..|.|+||..||.+|-...      ...||.|+...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            46899999999999887       3 4599999999999997532      35799998764

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=92.73  E-value=6.4  Score=44.10  Aligned_cols=235  Identities=13%  Similarity=0.096  Sum_probs=127.1

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      ..++.|+..|++.+..+|-.|++-+..++...+   ..+++. +|...++++....++..-..|+-+|+.|+..     .
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~r-----G  411 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALR-----G  411 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhc-----C
Confidence            446677777888888899999999999998776   223322 3555666665543456666788888887742     2


Q ss_pred             ccC----CCchHHHHHHhc--------CCCHHHHHHHHHHHHHHhccCCCh--hhHhhhhhHHHHHH-HHHhcCCCccch
Q 041252          229 LMQ----PAKVSLLVDMLN--------EGSVETKINCTRLIEKLMEEKDFR--PEIVSSHRLLIGLM-RLVKNKRHPNGI  293 (450)
Q Consensus       229 i~~----~g~i~~Lv~lL~--------~~~~~~~~~aa~~L~~La~~~~~~--~~~~~~~g~l~~Lv-~lL~~~~~~~~~  293 (450)
                      +.-    ...++.++.-|.        +....+|..|+-++|.++...+..  +-+.  ..+...|+ ..+-+. +.+.+
T Consensus       412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l--~~L~s~LL~~AlFDr-evncR  488 (1133)
T KOG1943|consen  412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL--QSLASALLIVALFDR-EVNCR  488 (1133)
T ss_pred             CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH--HHHHHHHHHHHhcCc-hhhHh
Confidence            222    244666666553        123578999999999997554322  1111  11222222 222333 56677


Q ss_pred             hHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCC---hhHHHHHHHHHHH-hcCChhhHHHHhccCCChHHHHHHHh
Q 041252          294 LPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLD---PDCLQLALCILDA-LSSLPEGKLALKDCANTIPNTVRLLM  369 (450)
Q Consensus       294 ~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~---~~~~~~al~~L~~-L~~~~e~r~~i~~~~g~i~~Lv~lL~  369 (450)
                      .+|..||....+...|         +|.=++++..-|   ...+.++-..|.. ++..+..+.-+.++     .+.+.+.
T Consensus       489 RAAsAAlqE~VGR~~n---------~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~  554 (1133)
T KOG1943|consen  489 RAASAALQENVGRQGN---------FPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVC  554 (1133)
T ss_pred             HHHHHHHHHHhccCCC---------CCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccc
Confidence            8888887765543222         222222222211   1222222222221 22223333333331     1112244


Q ss_pred             cCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcC
Q 041252          370 RVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG  414 (450)
Q Consensus       370 ~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~  414 (450)
                      +.+...++.|..+|..|+...++.     ...+.+++|+....++
T Consensus       555 HWd~~irelaa~aL~~Ls~~~pk~-----~a~~~L~~lld~~ls~  594 (1133)
T KOG1943|consen  555 HWDVKIRELAAYALHKLSLTEPKY-----LADYVLPPLLDSTLSK  594 (1133)
T ss_pred             cccHHHHHHHHHHHHHHHHhhHHh-----hcccchhhhhhhhcCC
Confidence            456778888888887776655422     2345566666555443

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.70  E-value=0.19  Score=41.79  Aligned_cols=71  Identities=21%  Similarity=0.326  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252          275 RLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS  345 (450)
Q Consensus       275 g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~  345 (450)
                      .++..|+++|....++.+..-|+.=|..++ .++..|..+-+.|+=..++++|.+.+++++..|+.++..|-
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            468899999965445666666767777777 45666766667899999999999999999999999987664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.67  E-value=12  Score=38.47  Aligned_cols=175  Identities=11%  Similarity=0.063  Sum_probs=105.4

Q ss_pred             hhhHHHHHHHHHhcCCCc----hhhhhccCCCchHHHHHHhcCCC-------HHHHHHHHHHHHHHhccCCC--hhhHhh
Q 041252          206 HAVGSEAVGVLVNLTLDS----ESKTNLMQPAKVSLLVDMLNEGS-------VETKINCTRLIEKLMEEKDF--RPEIVS  272 (450)
Q Consensus       206 ~~v~~~Al~~L~~Ls~~~----~~k~~i~~~g~i~~Lv~lL~~~~-------~~~~~~aa~~L~~La~~~~~--~~~~~~  272 (450)
                      ++-+-.|+-.+..+...+    .+|+.+.++-+.+.+-++|.+++       .-.+.-+..+|.-.++..+.  ..++  
T Consensus        25 D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~--  102 (698)
T KOG2611|consen   25 DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEM--  102 (698)
T ss_pred             hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHH--
Confidence            344444444444454433    46777888888889888886431       22355566667767665442  2223  


Q ss_pred             hhhHHHHHHHHHhcCCCcc------chhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhc
Q 041252          273 SHRLLIGLMRLVKNKRHPN------GILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLD-PDCLQLALCILDALS  345 (450)
Q Consensus       273 ~~g~l~~Lv~lL~~~~~~~------~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~-~~~~~~al~~L~~L~  345 (450)
                       ...||.|..++..+.+++      ....+..+|+.+++++.....++..|+++.+-++-.-.+ .--.+.++.++..+.
T Consensus       103 -v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~  181 (698)
T KOG2611|consen  103 -VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLV  181 (698)
T ss_pred             -HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence             245888999888766666      778999999999999999999999999999987753222 122344455554443


Q ss_pred             CC----hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252          346 SL----PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI  386 (450)
Q Consensus       346 ~~----~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  386 (450)
                      ..    ++.-..+..   .|..+.+-+.......+-..+..|..+
T Consensus       182 ~~~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  182 SKLDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             HhcccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            32    233333322   133333333333344555566777644

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.67  E-value=1.7  Score=38.95  Aligned_cols=110  Identities=15%  Similarity=0.225  Sum_probs=75.4

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHH-HHHHHHhhCChHHHHhhhCCC--------CChhhHHHHHHHHHhcC
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHAS-ARKTMVDEGGVALISSLLGPF--------TSHAVGSEAVGVLVNLT  220 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~-~r~~i~~~G~i~~Lv~lL~~~--------~~~~v~~~Al~~L~~Ls  220 (450)
                      .....+..|.+.....  ..+..|+..-...+. --+.+.+.||+..|+.+|...        .+.......+..|..+.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            3455677776643322  455566554444432 234566889999999988431        13357778899999988


Q ss_pred             CCchhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 041252          221 LDSESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLM  261 (450)
Q Consensus       221 ~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La  261 (450)
                      .+......+. .++.+..|+..|.+.+..++..+..+|..++
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8887776655 5899999999999999999999999888764

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.66  E-value=16  Score=41.60  Aligned_cols=218  Identities=14%  Similarity=0.119  Sum_probs=123.6

Q ss_pred             ChhhHHHHHHHHHhcCCCchhhhhccC--CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-ChhhHhhhhhHHHHHH
Q 041252          205 SHAVGSEAVGVLVNLTLDSESKTNLMQ--PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD-FRPEIVSSHRLLIGLM  281 (450)
Q Consensus       205 ~~~v~~~Al~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~-~~~~~~~~~g~l~~Lv  281 (450)
                      +..+|..+-.+|..++..++......+  ......|.+-+++.+...+.....+|..|-...+ ..... . ...|+.++
T Consensus       667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~-i-~k~I~EvI  744 (1176)
T KOG1248|consen  667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL-I-PKLIPEVI  744 (1176)
T ss_pred             cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH-H-HHHHHHHH
Confidence            678999999999998776433322211  1233444444555566667777777766643322 11111 1 12233333


Q ss_pred             HHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcC------CHHHHHHhcCCC--ChhHHHHH--HHHHHHhcCChh--
Q 041252          282 RLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIG------AVPQLVELLPSL--DPDCLQLA--LCILDALSSLPE--  349 (450)
Q Consensus       282 ~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G------~v~~Lv~lL~~~--~~~~~~~a--l~~L~~L~~~~e--  349 (450)
                      =.++. .+...++.+..+|..|+.    .....+.|      .|...+.++..+  +......+  +-++..+.....  
T Consensus       745 L~~Ke-~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~  819 (1176)
T KOG1248|consen  745 LSLKE-VNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI  819 (1176)
T ss_pred             Hhccc-ccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence            33343 356778889999988873    11222223      444555555443  22222222  333333322111  


Q ss_pred             hHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041252          350 GKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL  429 (450)
Q Consensus       350 ~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~  429 (450)
                      .-....  .+.|..+...|.+.+..+...|++.+..++..-|+.+... ...-+++.++.+++.+ ....|.+..-+|..
T Consensus       820 ld~~~l--~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~-~~~~LL~sll~ls~d~-k~~~r~Kvr~Llek  895 (1176)
T KOG1248|consen  820 LDDETL--EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP-HLEELLPSLLALSHDH-KIKVRKKVRLLLEK  895 (1176)
T ss_pred             ccHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh-hHHHHHHHHHHHHHhh-hHHHHHHHHHHHHH
Confidence            111111  2345566667777889999999999999999888654322 2334788888888776 57788888888876


Q ss_pred             HHhh
Q 041252          430 CSLN  433 (450)
Q Consensus       430 ls~~  433 (450)
                      |-.-
T Consensus       896 Lirk  899 (1176)
T KOG1248|consen  896 LIRK  899 (1176)
T ss_pred             HHHH
Confidence            5443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=92.65  E-value=1.1  Score=39.27  Aligned_cols=145  Identities=17%  Similarity=0.163  Sum_probs=94.6

Q ss_pred             CchHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHH
Q 041252          233 AKVSLLVDMLNE--GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEV  309 (450)
Q Consensus       233 g~i~~Lv~lL~~--~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~  309 (450)
                      ..+..++..|..  ...++|..+.-++..+.   +..++.+  ...+...+..+-.+.+.+....+..+|..|= ..++.
T Consensus         3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~--~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv   77 (157)
T PF11701_consen    3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEF--KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDV   77 (157)
T ss_dssp             CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHH
T ss_pred             HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHH--HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHH
Confidence            345566666664  57788888888887773   1111111  1122222222222223445666777777665 56677


Q ss_pred             HHHHH-hcCCHHHHHHhcC--CCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC-ChH-HHHHHHHHHH
Q 041252          310 RSLVV-SIGAVPQLVELLP--SLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV-SED-CTQYALSILW  384 (450)
Q Consensus       310 ~~~iv-~~G~v~~Lv~lL~--~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~-s~~-~~e~A~~~L~  384 (450)
                      ...+. ..|.++.++.++.  +.+...+..++.+|..-|.....|..+.+  .+++.|-++.... ++. ++-.|+-+|.
T Consensus        78 ~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   78 GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            77777 5799999999998  77889999999999988887777777776  7899999998544 344 5666665554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=92.41  E-value=5.3  Score=44.23  Aligned_cols=266  Identities=14%  Similarity=0.077  Sum_probs=140.0

Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-CchhhhhccC
Q 041252          153 ELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSESKTNLMQ  231 (450)
Q Consensus       153 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~k~~i~~  231 (450)
                      .|++.+.+.+.+.|.-|...|..--..+.-+-+.=-+...+..|+++|... +.+++..|+..|.-|+. -.+.+-    
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~-ngEVQnlAVKClg~lvsKvke~~l----   83 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK-NGEVQNLAVKCLGPLVSKVKEDQL----   83 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHhhchHHHH----
Confidence            577778888888888888887654432211101111234578899999875 78999999999987762 111110    


Q ss_pred             CCchHHHHHHhcCCCHHHHHHHHHHHHH-HhccCCChhhHhhhh----hHHHHHHHHHhc-CCCccchhHHHHHHHHhcc
Q 041252          232 PAKVSLLVDMLNEGSVETKINCTRLIEK-LMEEKDFRPEIVSSH----RLLIGLMRLVKN-KRHPNGILPGLSLLRSICL  305 (450)
Q Consensus       232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~-La~~~~~~~~~~~~~----g~l~~Lv~lL~~-~~~~~~~~~al~aL~~Ls~  305 (450)
                      .-.+..|..-+-++-.+.|.-+.-.|.. .+.-.+.... ....    .+.+.|..-+.. +....++..++..|..+-+
T Consensus        84 e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~-~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   84 ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSS-FLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccc-ccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence            1112333333334434444333333322 2221111000 1112    233333333322 1111233344433332211


Q ss_pred             ChHHHHHH--HhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhc-CChHHHHHHHHH
Q 041252          306 LNEVRSLV--VSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMR-VSEDCTQYALSI  382 (450)
Q Consensus       306 ~~~~~~~i--v~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~-~s~~~~e~A~~~  382 (450)
                      .  .-..+  ...+....++.-|.+....++..|+.+|..|+.. -++....+   .|..|++-|.. .++...+--+.+
T Consensus       163 r--~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~-~~~~ly~~---li~~Ll~~L~~~~q~~~~rt~Iq~  236 (1233)
T KOG1824|consen  163 R--FGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASS-CNRDLYVE---LIEHLLKGLSNRTQMSATRTYIQC  236 (1233)
T ss_pred             h--hcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh-cCHHHHHH---HHHHHHhccCCCCchHHHHHHHHH
Confidence            1  00011  2345566777777777889999999999999863 34444432   45566666544 345556666677


Q ss_pred             HHHhcccCchhHHHHHHhcChHHHHHHHH---HcCCCHHHHHHHHHHHHHHHhh
Q 041252          383 LWSICKIAPEECSSAAVDAGLAAKLFLVI---QSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       383 L~~L~~~~~~~~~~~~~~~G~i~~L~~ll---~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      |..+|..+..+  .--.-...+|.+.+..   +.+ +++.|+.....+..+=..
T Consensus       237 l~~i~r~ag~r--~~~h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~r  287 (1233)
T KOG1824|consen  237 LAAICRQAGHR--FGSHLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRR  287 (1233)
T ss_pred             HHHHHHHhcch--hhcccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHh
Confidence            77777755321  1111234556666666   444 678999988877664433

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=92.36  E-value=0.027  Score=60.78  Aligned_cols=46  Identities=15%  Similarity=0.231  Sum_probs=38.7

Q ss_pred             eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcC-CCCCCCcCCcCCC
Q 041252           70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG-RYTCPTTMQELWD  116 (450)
Q Consensus        70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~  116 (450)
                      +.|+||.+ ..+|+++.|||.||++|+.+.+... ...||.|+..+..
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            89999999 8888899999999999999987743 3459999866544

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.19  E-value=0.11  Score=50.99  Aligned_cols=53  Identities=19%  Similarity=0.417  Sum_probs=36.8

Q ss_pred             CCeeeCcCCCCCCCCCe----eCCCCCcccHHHHHHHHhcC--CCCCCCcCCcCCCCCC
Q 041252           67 PSVFVCPISLEPMQDPV----TLCTGQTYERSNILKWFSLG--RYTCPTTMQELWDDSV  119 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dPv----~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~~l  119 (450)
                      |-.-.|.||-+.+-.--    +-.|||+|.-.|+.+||+.-  +.+||.|+-.++...+
T Consensus         2 pi~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~   60 (465)
T KOG0827|consen    2 PIMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV   60 (465)
T ss_pred             CccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence            44567999966443211    34599999999999999953  2579999855554433

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=91.82  E-value=0.052  Score=40.74  Aligned_cols=47  Identities=19%  Similarity=0.373  Sum_probs=22.4

Q ss_pred             eeeCcCCCCCCC-C---CeeC----CCCCcccHHHHHHHHhc--CC--------CCCCCcCCcCC
Q 041252           69 VFVCPISLEPMQ-D---PVTL----CTGQTYERSNILKWFSL--GR--------YTCPTTMQELW  115 (450)
Q Consensus        69 ~~~Cpi~~~~m~-d---Pv~~----~~g~ty~r~~I~~~~~~--~~--------~~cP~~~~~l~  115 (450)
                      +..|+||..... +   |++.    .|+++|=..|+.+||..  +.        ..||.|+.+++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            356999998654 2   5543    48999999999999873  11        25999988753

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=91.79  E-value=0.84  Score=36.59  Aligned_cols=91  Identities=13%  Similarity=0.053  Sum_probs=57.2

Q ss_pred             hhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhcc-CCChHHHHHHHhcC
Q 041252          293 ILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC-ANTIPNTVRLLMRV  371 (450)
Q Consensus       293 ~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~-~g~i~~Lv~lL~~~  371 (450)
                      +..++.+|...+..-.....-.-.-.+++++..+.+.+..++..|+.+|.+++..-.  ..+..+ ......|.+++...
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP   80 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC
Confidence            445566666665322111111123468899999999999999999999999986532  222221 24566777777766


Q ss_pred             ChHHHHHHHHHHHHh
Q 041252          372 SEDCTQYALSILWSI  386 (450)
Q Consensus       372 s~~~~e~A~~~L~~L  386 (450)
                      ++.++..| ..|-++
T Consensus        81 d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   81 DENVRSAA-ELLDRL   94 (97)
T ss_pred             chhHHHHH-HHHHHH
Confidence            67766544 555443

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.62  E-value=15  Score=39.88  Aligned_cols=54  Identities=13%  Similarity=0.025  Sum_probs=35.3

Q ss_pred             ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252          372 SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL  432 (450)
Q Consensus       372 s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~  432 (450)
                      +..++..|+.+|..+...++      .....+...|...+.. .+...|+.|...|+.+..
T Consensus       479 n~ivRaaAv~alaKfg~~~~------~l~~sI~vllkRc~~D-~DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  479 NAIVRAAAVSALAKFGAQDV------VLLPSILVLLKRCLND-SDDEVRDRATFYLKNLEE  532 (865)
T ss_pred             hhhhHHHHHHHHHHHhcCCC------CccccHHHHHHHHhcC-chHHHHHHHHHHHHHhhh
Confidence            45677788888888874442      1223343344444444 378899999999999873

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.62  E-value=12  Score=40.43  Aligned_cols=184  Identities=15%  Similarity=0.119  Sum_probs=94.3

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-------
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-------  221 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-------  221 (450)
                      +..+.+...|......+|++|.-++..+-+...    .+. -.+-+.+-.+|....+....++|.-.|.....       
T Consensus       134 pl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl  208 (948)
T KOG1058|consen  134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLI-PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYL  208 (948)
T ss_pred             hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhc-CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHH
Confidence            445566667777788899999888887755321    111 11223344566555566666666544443210       


Q ss_pred             ----------Cchhhhhc---------c----CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHH
Q 041252          222 ----------DSESKTNL---------M----QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLI  278 (450)
Q Consensus       222 ----------~~~~k~~i---------~----~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~  278 (450)
                                ++.....|         .    +...|..+..+|.+.++.++-.|+..|..|+.+....+.   +   ..
T Consensus       209 ~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~---A---a~  282 (948)
T KOG1058|consen  209 LSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA---A---AS  282 (948)
T ss_pred             HhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH---H---HH
Confidence                      01111000         0    122355555566655666666666666655443322111   1   12


Q ss_pred             HHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252          279 GLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL  347 (450)
Q Consensus       279 ~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~  347 (450)
                      .+++++.+..+-+++.-.+--|..+..  .++..+  .|.+--++++|++++.+++..++.+...|+++
T Consensus       283 ~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvss  347 (948)
T KOG1058|consen  283 TYIDLLVKESDNNVKLIVLDRLSELKA--LHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS  347 (948)
T ss_pred             HHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence            233333332233344333333444431  111111  24455677888889999999999988888764

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=91.61  E-value=5.7  Score=41.60  Aligned_cols=220  Identities=13%  Similarity=0.080  Sum_probs=134.3

Q ss_pred             chHHHHHHHHHHHHHHHHcHHHHHHHHhhCC----hHHHHhhhCCCCChhhHHHHHHHHHhcC-CCchhhhhccCCCchH
Q 041252          162 KGQARVQALKELHQIAAAHASARKTMVDEGG----VALISSLLGPFTSHAVGSEAVGVLVNLT-LDSESKTNLMQPAKVS  236 (450)
Q Consensus       162 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~----i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls-~~~~~k~~i~~~g~i~  236 (450)
                      +..+|..|+++|..-+..   .|..+...+-    ....++.-+.. +.+++..|.+.|..+- ..-.-....++.....
T Consensus       191 ~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq~~-d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~a  266 (858)
T COG5215         191 TSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQGN-DEELQHAAFGCLNKIMMLYYKFMQSYMENALAA  266 (858)
T ss_pred             hHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456888899998873321   1222222221    23334444443 7889999988887743 3334444666666677


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccC-CChh-------------hHh--hhhhHHHHHHHHHhc------CCCccchh
Q 041252          237 LLVDMLNEGSVETKINCTRLIEKLMEEK-DFRP-------------EIV--SSHRLLIGLMRLVKN------KRHPNGIL  294 (450)
Q Consensus       237 ~Lv~lL~~~~~~~~~~aa~~L~~La~~~-~~~~-------------~~~--~~~g~l~~Lv~lL~~------~~~~~~~~  294 (450)
                      .....+++.+.++...|...-..+++.. +..-             ...  ....++|.|+++|..      +.+.+...
T Consensus       267 lt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sm  346 (858)
T COG5215         267 LTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSM  346 (858)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhh
Confidence            7788889999999888877654454221 1100             001  123578999999975      12345566


Q ss_pred             HHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhcCC
Q 041252          295 PGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMRVS  372 (450)
Q Consensus       295 ~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~~s  372 (450)
                      +|..+|.-.+....+  .|++. ++..+=.=+++.+-.-++.|+.++...-..  ...+..++.  .++|.+...+...+
T Consensus       347 aA~sCLqlfaq~~gd--~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~--qalp~i~n~m~D~~  421 (858)
T COG5215         347 AASSCLQLFAQLKGD--KIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP--QALPGIENEMSDSC  421 (858)
T ss_pred             hHHHHHHHHHHHhhh--HhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH--hhhHHHHHhcccce
Confidence            666666655432222  23322 222222234666777888999999887755  345556664  68888888888666


Q ss_pred             hHHHHHHHHHHHHhcccC
Q 041252          373 EDCTQYALSILWSICKIA  390 (450)
Q Consensus       373 ~~~~e~A~~~L~~L~~~~  390 (450)
                      --+++.+++++..++.+-
T Consensus       422 l~vk~ttAwc~g~iad~v  439 (858)
T COG5215         422 LWVKSTTAWCFGAIADHV  439 (858)
T ss_pred             eehhhHHHHHHHHHHHHH
Confidence            778888888888887643

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=91.55  E-value=0.082  Score=51.91  Aligned_cols=47  Identities=23%  Similarity=0.287  Sum_probs=40.0

Q ss_pred             eCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc-CCCCCCCcCCcCCCC
Q 041252           71 VCPISLEPMQDPVTLCTGQTYERSNILKWFSL-GRYTCPTTMQELWDD  117 (450)
Q Consensus        71 ~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~-~~~~cP~~~~~l~~~  117 (450)
                      .|-||-+-=+|=-+-+|||-.|-.|+..|... +..+||.||..+.-+
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            79999998778777789999999999999864 478899999876543

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.33  E-value=0.21  Score=48.74  Aligned_cols=63  Identities=25%  Similarity=0.255  Sum_probs=50.1

Q ss_pred             eeCcCCCCCCC------CCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC--CC---CCCcchHHHHHHHHHH
Q 041252           70 FVCPISLEPMQ------DPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL--WD---DSVTPNKTLYHLIHTW  132 (450)
Q Consensus        70 ~~Cpi~~~~m~------dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l--~~---~~l~~n~~L~~~I~~w  132 (450)
                      +.|-||.+.++      -|-++.||||+|..|+..-+..+...||.||.+.  ..   ..+..|.++-.+|+..
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            46888887776      3778889999999999998887777899999873  32   4567788888877665

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=91.11  E-value=0.14  Score=49.32  Aligned_cols=50  Identities=20%  Similarity=0.272  Sum_probs=35.4

Q ss_pred             CeeeCcCCCCCCC--CCee--CCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCC
Q 041252           68 SVFVCPISLEPMQ--DPVT--LCTGQTYERSNILKWFSLGRYTCPTTMQELWDDS  118 (450)
Q Consensus        68 ~~~~Cpi~~~~m~--dPv~--~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~  118 (450)
                      +++ ||+|.+.|.  |---  -+||+..||-|...--+.-+..||.||..++++.
T Consensus        14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            345 999999987  3222  2589998888865544444678999998776643

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.84  E-value=0.18  Score=49.57  Aligned_cols=50  Identities=26%  Similarity=0.519  Sum_probs=38.9

Q ss_pred             eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCC
Q 041252           69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV  119 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l  119 (450)
                      ...|.++...|.|||-+.+|-.|+-..|--|+.. +.+=|.+++++...+|
T Consensus        40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dL   89 (518)
T KOG0883|consen   40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDL   89 (518)
T ss_pred             hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccc
Confidence            3579999999999999999999999999999975 3444555555444333

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=90.61  E-value=0.045  Score=58.06  Aligned_cols=46  Identities=22%  Similarity=0.382  Sum_probs=33.6

Q ss_pred             eeCcCCCCCCCCCee---CCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           70 FVCPISLEPMQDPVT---LCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        70 ~~Cpi~~~~m~dPv~---~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      -.||+|..-+.|-.+   ..|+|-||.+||..|-.. ..+||.|+..|..
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence            357777666666553   358888888888888774 6789999887654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=90.58  E-value=6.8  Score=35.02  Aligned_cols=111  Identities=15%  Similarity=0.196  Sum_probs=78.8

Q ss_pred             CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCH-HHHHH
Q 041252          246 SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAV-PQLVE  324 (450)
Q Consensus       246 ~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v-~~Lv~  324 (450)
                      ++.+|.++..++..|+...+..     -...++.+...|+++ ++.+++.|+.+|..|-..+-.|.+    |-+ ..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~-----ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNL-----VEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKVK----GQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHH-----HHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHH
Confidence            4678999999999997544322     134678999999987 799999999999999765433321    323 67778


Q ss_pred             hcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhc
Q 041252          325 LLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMR  370 (450)
Q Consensus       325 lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~  370 (450)
                      ++.+.+++++..|...+..+.... +...+..   .++.++..+..
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~~-~~~~i~~---~~~e~i~~l~~  112 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKKR-NPNIIYN---NFPELISSLNN  112 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHhc-cchHHHH---HHHHHHHHHhC
Confidence            888899999999999999998642 2333332   34455555444

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.47  E-value=7.1  Score=44.21  Aligned_cols=222  Identities=13%  Similarity=0.089  Sum_probs=121.2

Q ss_pred             cchHHHHHHHHHHHHHHHHcHHHHHHHHhh--CChHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cc-hhhhhccCCCchH
Q 041252          161 VKGQARVQALKELHQIAAAHASARKTMVDE--GGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DS-ESKTNLMQPAKVS  236 (450)
Q Consensus       161 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~--G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~-~~k~~i~~~g~i~  236 (450)
                      .+...|.++-+.|..++.. +.....+.+.  .....|..-.++. +..++..++.+|..|-. ++ +....+  ...|+
T Consensus       666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~  741 (1176)
T KOG1248|consen  666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP  741 (1176)
T ss_pred             ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence            3566888888888888754 2222222111  0112233333332 34556666655554322 11 222222  33455


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhc----cCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHH
Q 041252          237 LLVDMLNEGSVETKINCTRLIEKLME----EKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSL  312 (450)
Q Consensus       237 ~Lv~lL~~~~~~~~~~aa~~L~~La~----~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~  312 (450)
                      -++-.++..+...|++|-.+|..+..    .++....   ....+...+..+..+.--+.....+..|..+..--.....
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~  818 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN  818 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence            55555577799999999999988862    1111000   1123444444444331011112222213333322222233


Q ss_pred             HHhcCCHHHHHH----hcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhc
Q 041252          313 VVSIGAVPQLVE----LLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSIC  387 (450)
Q Consensus       313 iv~~G~v~~Lv~----lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  387 (450)
                      +.+.+.++.+++    .|.+.++++...|++.+..++.. |+....-.. +-.++.+..++..+...++...-..|-.++
T Consensus       819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~LlekLi  897 (1176)
T KOG1248|consen  819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRLLLEKLI  897 (1176)
T ss_pred             cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            444444444444    45778999999999999999866 666555444 457889999888888888877777777776


Q ss_pred             ccC
Q 041252          388 KIA  390 (450)
Q Consensus       388 ~~~  390 (450)
                      ...
T Consensus       898 rkf  900 (1176)
T KOG1248|consen  898 RKF  900 (1176)
T ss_pred             HHh
Confidence            644

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.44  E-value=0.052  Score=37.72  Aligned_cols=44  Identities=20%  Similarity=0.209  Sum_probs=34.1

Q ss_pred             eCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcC
Q 041252           71 VCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQEL  114 (450)
Q Consensus        71 ~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l  114 (450)
                      .|.||.+--.|.|+-.|||. .|..|=.+.+..++..||.||.++
T Consensus         9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi   53 (62)
T KOG4172|consen    9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI   53 (62)
T ss_pred             ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence            49999887778888889996 577775555554688999998764

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=90.35  E-value=3.4  Score=39.54  Aligned_cols=174  Identities=16%  Similarity=0.176  Sum_probs=107.6

Q ss_pred             hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCC--chHHHHHHhcC----CCHHHHHHHHHHHHHHhccCCC
Q 041252          193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPA--KVSLLVDMLNE----GSVETKINCTRLIEKLMEEKDF  266 (450)
Q Consensus       193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~~----~~~~~~~~aa~~L~~La~~~~~  266 (450)
                      ...+..++..+ ..+-+-.++.+++-+..++..-..+...+  ....+..++..    .++..+.-+.+++.|+-.....
T Consensus        65 ~~~~~~~~~~W-p~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~  143 (268)
T PF08324_consen   65 LILLLKILLSW-PPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG  143 (268)
T ss_dssp             HHHHHHHHCCS--CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHhC-CCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence            34556666666 45667888999998888876655554432  34455555432    4678888899999999777777


Q ss_pred             hhhHhhhhh-HHHHHHHHHhcCC---CccchhHHHHHHHHhccChH-HH-HHHHhcCCHHHHHHhc-CC-CChhHHHHHH
Q 041252          267 RPEIVSSHR-LLIGLMRLVKNKR---HPNGILPGLSLLRSICLLNE-VR-SLVVSIGAVPQLVELL-PS-LDPDCLQLAL  338 (450)
Q Consensus       267 ~~~~~~~~g-~l~~Lv~lL~~~~---~~~~~~~al~aL~~Ls~~~~-~~-~~iv~~G~v~~Lv~lL-~~-~~~~~~~~al  338 (450)
                      +..+....+ .+...+..+....   +.+++.+++..+.|++..-. .+ ..=.....+..+++.+ .. .+++..-.++
T Consensus       144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L  223 (268)
T PF08324_consen  144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL  223 (268)
T ss_dssp             HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            766665555 3333333322221   46678889999999983221 11 1111122345666644 22 5899999999


Q ss_pred             HHHHHhcCChhhHHHHhccCCChHHHHHHH
Q 041252          339 CILDALSSLPEGKLALKDCANTIPNTVRLL  368 (450)
Q Consensus       339 ~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL  368 (450)
                      -+|.+|...+........ .-++...+...
T Consensus       224 vAlGtL~~~~~~~~~~~~-~l~~~~~~~~~  252 (268)
T PF08324_consen  224 VALGTLLSSSDSAKQLAK-SLDVKSVLSKK  252 (268)
T ss_dssp             HHHHHHHCCSHHHHHHCC-CCTHHHHHHHH
T ss_pred             HHHHHHhccChhHHHHHH-HcChHHHHHHH
Confidence            999999987777666665 33455444443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=90.26  E-value=20  Score=35.26  Aligned_cols=191  Identities=17%  Similarity=0.168  Sum_probs=107.3

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh--hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC---hHH
Q 041252          235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV--SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL---NEV  309 (450)
Q Consensus       235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~--~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~---~~~  309 (450)
                      +.-.+..+...+...|+.+...|.++...... ...+  ...-++..+.+.++.+. .+-+..|+.++.-++..   ...
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCcc
Confidence            44455556667789999998888877544432 2333  22346777888887763 34455566666666633   234


Q ss_pred             HHHHHhcCCHHHHHHhcCCCC--hhHHHHHHHHHHHhc---CC-hhhHHHHhccCCChHHHHHH--Hhc----------C
Q 041252          310 RSLVVSIGAVPQLVELLPSLD--PDCLQLALCILDALS---SL-PEGKLALKDCANTIPNTVRL--LMR----------V  371 (450)
Q Consensus       310 ~~~iv~~G~v~~Lv~lL~~~~--~~~~~~al~~L~~L~---~~-~e~r~~i~~~~g~i~~Lv~l--L~~----------~  371 (450)
                      ...+.+ ...|.|...+.+++  ..++..++.+|..++   .. ++.-....+   .+..+...  +..          .
T Consensus       123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~~~~~  198 (309)
T PF05004_consen  123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---SLESIFLLSILKSDGNAPVVAAED  198 (309)
T ss_pred             HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCCcccccCCC
Confidence            444444 36778888887654  345455555555543   22 222221111   12211111  111          1


Q ss_pred             ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          372 SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       372 s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      ++.+.-.|+.+-.-|...-+........ ...++.|..+|++. +..+|-+|-+.|.++-..
T Consensus       199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  199 DAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            2345555665544444333332222222 34679999999987 788999999999887554

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=90.23  E-value=13  Score=36.38  Aligned_cols=219  Identities=15%  Similarity=0.192  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHHHcHHHHHHHHhhC-ChHHHHhhhCCCC-ChhhHHHHHHHHHhcCCCchhhhhccC-CCchHHHHHH
Q 041252          165 ARVQALKELHQIAAAHASARKTMVDEG-GVALISSLLGPFT-SHAVGSEAVGVLVNLTLDSESKTNLMQ-PAKVSLLVDM  241 (450)
Q Consensus       165 ~~~~Al~~L~~l~~~~~~~r~~i~~~G-~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~l  241 (450)
                      .+.-|+.+|.++... ++.|+.+-..+ .-..++.+++... +...|.+.+-+++.|+.+++.-+.+-+ -.-+..|+.+
T Consensus       165 Trlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~i  243 (432)
T COG5231         165 TRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAI  243 (432)
T ss_pred             HHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            466688888888753 55666654443 3345667776432 467889999999999988766543332 3456677777


Q ss_pred             hcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhh---hHHHHHHHHHhc-CCCccchhHHHHHHH--------Hhc----
Q 041252          242 LNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSH---RLLIGLMRLVKN-KRHPNGILPGLSLLR--------SIC----  304 (450)
Q Consensus       242 L~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~---g~l~~Lv~lL~~-~~~~~~~~~al~aL~--------~Ls----  304 (450)
                      .++. -..+-..+++++.++.+..+  +..+.+.   |-+.+-+++|.. +.+.+-...-..-+.        .||    
T Consensus       244 Vk~~~keKV~Rlc~~Iv~n~~dK~p--K~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~  321 (432)
T COG5231         244 VKERAKEKVLRLCCGIVANVLDKSP--KGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN  321 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc--cchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            7654 34556677888888875221  1122222   212233344432 222111111000000        011    


Q ss_pred             --------------------cChHHHHHHHh--cCCHHHHHHhcCCCChh-HHHHHHHHHHHhcC-ChhhHHHHhccCCC
Q 041252          305 --------------------LLNEVRSLVVS--IGAVPQLVELLPSLDPD-CLQLALCILDALSS-LPEGKLALKDCANT  360 (450)
Q Consensus       305 --------------------~~~~~~~~iv~--~G~v~~Lv~lL~~~~~~-~~~~al~~L~~L~~-~~e~r~~i~~~~g~  360 (450)
                                          .+..|-..+.+  ...+..|.++|++.++. ...-|+.-+..+.. .||++..+.. -|+
T Consensus       322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K-yg~  400 (432)
T COG5231         322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK-YGV  400 (432)
T ss_pred             HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH-hhh
Confidence                                11224444443  34778899999776554 45556666666664 4999999988 899


Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHhc
Q 041252          361 IPNTVRLLMRVSEDCTQYALSILWSIC  387 (450)
Q Consensus       361 i~~Lv~lL~~~s~~~~e~A~~~L~~L~  387 (450)
                      =+.++.++.+.+++++-+|+.++..+.
T Consensus       401 k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         401 KEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            999999999999999999999887653

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=89.97  E-value=0.36  Score=36.33  Aligned_cols=47  Identities=15%  Similarity=0.181  Sum_probs=22.4

Q ss_pred             eeCcCCCCCCC-----CCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           70 FVCPISLEPMQ-----DPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        70 ~~Cpi~~~~m~-----dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      -+|.||++-.-     +|.+++  |++-.||.|.+-=.+.|+..||.|+.++..
T Consensus        10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr   63 (80)
T PF14569_consen   10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR   63 (80)
T ss_dssp             -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred             cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence            46999986443     576764  899999999998888899999999977643

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=89.88  E-value=22  Score=35.75  Aligned_cols=234  Identities=19%  Similarity=0.113  Sum_probs=122.6

Q ss_pred             hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCChhhHh
Q 041252          193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLN-EGSVETKINCTRLIEKLMEEKDFRPEIV  271 (450)
Q Consensus       193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~~~~~~~~  271 (450)
                      |..++.=|++..+..++..++--|+.-..+++-+..+...|.+..+++.+. .++...-..++.++..+...+.......
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~  102 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL  102 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence            455566566544667888888888888889999999999999999999994 3344355555445544433333333344


Q ss_pred             hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhc---C------CCChhHHHHHHHHHH
Q 041252          272 SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL---P------SLDPDCLQLALCILD  342 (450)
Q Consensus       272 ~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL---~------~~~~~~~~~al~~L~  342 (450)
                      ...+.+..+++++.-..........-      .....+-.++.+ +.+......+   .      .....-+..|+.+|.
T Consensus       103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le  175 (361)
T PF07814_consen  103 LDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLALE  175 (361)
T ss_pred             hchhHHHHHHHHhccccccccccchh------hhhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHHHH
Confidence            45556666677776111100111000      000001111111 1111111111   1      112344556666777


Q ss_pred             HhcC--------C-------hhhHHHHhccCCChHHHHHHHhc----CC------------hHHHHHHHHHHHHhcccCc
Q 041252          343 ALSS--------L-------PEGKLALKDCANTIPNTVRLLMR----VS------------EDCTQYALSILWSICKIAP  391 (450)
Q Consensus       343 ~L~~--------~-------~e~r~~i~~~~g~i~~Lv~lL~~----~s------------~~~~e~A~~~L~~L~~~~~  391 (450)
                      .++.        .       +--+..+.. -||+..++.++..    .+            -..-+.+.++|-+.+..+.
T Consensus       176 ~l~~~~~~~~~~~~t~~~~~~~fkeelr~-lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~  254 (361)
T PF07814_consen  176 SLVRSLREAGDLSETSSRAGEWFKEELRE-LGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSE  254 (361)
T ss_pred             HHHHHHhhcccchhhhhhccccchhhhhh-HHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCc
Confidence            6641        0       112455555 6899999999872    11            1345678889988887665


Q ss_pred             hhHH-HHHHhcChHHHHHHHHHcCCCHHHHH---HHHHHHHHHHhhc
Q 041252          392 EECS-SAAVDAGLAAKLFLVIQSGCNPVLKQ---RSAELLKLCSLNY  434 (450)
Q Consensus       392 ~~~~-~~~~~~G~i~~L~~ll~s~~~~~~k~---~A~~lL~~ls~~~  434 (450)
                      +... ......+..+.+...+-..+.+...+   .+..++-+++.+.
T Consensus       255 ~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n  301 (361)
T PF07814_consen  255 ENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN  301 (361)
T ss_pred             cchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence            4321 11223455555554443333343333   4444444455553

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=89.66  E-value=1.1  Score=41.70  Aligned_cols=83  Identities=19%  Similarity=0.198  Sum_probs=64.9

Q ss_pred             hhHHHHHHHHHHHhcCChhhHHHHhccCC-------ChHHHHHHHhc-CChHHHHHHHHHHHHhcccCchhHHHHHHhcC
Q 041252          331 PDCLQLALCILDALSSLPEGKLALKDCAN-------TIPNTVRLLMR-VSEDCTQYALSILWSICKIAPEECSSAAVDAG  402 (450)
Q Consensus       331 ~~~~~~al~~L~~L~~~~e~r~~i~~~~g-------~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G  402 (450)
                      ..-+..|+.+|..|+..+.|...+.. .+       .+..|++++.. .+.-.+|.|+..|.+||..++.-++..+.+.+
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliLa-Tpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLILA-TPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceeee-CCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            35688999999999998888777765 33       34455566544 35678999999999999988755666777899


Q ss_pred             hHHHHHHHHHcC
Q 041252          403 LAAKLFLVIQSG  414 (450)
Q Consensus       403 ~i~~L~~ll~s~  414 (450)
                      .+..|+.++...
T Consensus       217 ~i~~Li~FiE~a  228 (257)
T PF12031_consen  217 CISHLIAFIEDA  228 (257)
T ss_pred             hHHHHHHHHHHH
Confidence            999999999765

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=89.45  E-value=17  Score=41.45  Aligned_cols=240  Identities=15%  Similarity=0.133  Sum_probs=139.2

Q ss_pred             HHhhCC---hHHHHhhhCCCCChhhHHHHHHHHHhcCC--CchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 041252          187 MVDEGG---VALISSLLGPFTSHAVGSEAVGVLVNLTL--DSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLM  261 (450)
Q Consensus       187 i~~~G~---i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~--~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La  261 (450)
                      ..+.|+   ++.+...++.-.....+-+|+..|..|+.  +++++-    -..+|.++.++......+|..|..+|..+.
T Consensus       415 ~~~~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L  490 (1431)
T KOG1240|consen  415 PKEEGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELL  490 (1431)
T ss_pred             ccccceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            344565   45566666554345677889999999886  344432    235899999999889999999998887773


Q ss_pred             c----cCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh----HHHHHHHhc-----------------
Q 041252          262 E----EKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN----EVRSLVVSI-----------------  316 (450)
Q Consensus       262 ~----~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~----~~~~~iv~~-----------------  316 (450)
                      .    -+.....++. .=++|.|-.++.+....-++.+-+..|..|+..-    +.-..+..+                 
T Consensus       491 ~~Vr~~~~~daniF~-eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~  569 (1431)
T KOG1240|consen  491 ALVRDIPPSDANIFP-EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYN  569 (1431)
T ss_pred             hhccCCCcccchhhH-hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc
Confidence            1    1222233332 2346777777766423334444444444443110    000011111                 


Q ss_pred             --------CCHHHHHHhcCCCChhHHHHHHHHHHHhcC-------------------C---hhhHHHHhc----------
Q 041252          317 --------GAVPQLVELLPSLDPDCLQLALCILDALSS-------------------L---PEGKLALKD----------  356 (450)
Q Consensus       317 --------G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-------------------~---~e~r~~i~~----------  356 (450)
                              ++=...+.+|.++++-++..-+..|.-||.                   +   ..-|.++.+          
T Consensus       570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG  649 (1431)
T KOG1240|consen  570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG  649 (1431)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence                    122344555666666666655555555553                   1   123444433          


Q ss_pred             ----cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252          357 ----CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL  432 (450)
Q Consensus       357 ----~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~  432 (450)
                          .+..+|.|.+-|....+.+...|+++|..|++..-  .++.++- ..+....-+|.++ +.=+|+.+..++.-...
T Consensus       650 ~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l--l~K~~v~-~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  650 WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL--LRKPAVK-DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc--cchHHHH-HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence                13557777888888888999999999999988652  1122211 2334444566666 56788888888877666


Q ss_pred             hcC
Q 041252          433 NYT  435 (450)
Q Consensus       433 ~~~  435 (450)
                      .+.
T Consensus       726 ~ls  728 (1431)
T KOG1240|consen  726 QLS  728 (1431)
T ss_pred             hhh
Confidence            644

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=89.37  E-value=15  Score=32.72  Aligned_cols=110  Identities=17%  Similarity=0.189  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCc-hHHHHHH
Q 041252          163 GQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAK-VSLLVDM  241 (450)
Q Consensus       163 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~-i~~Lv~l  241 (450)
                      +.+|..++-.+..++...+..    ++ ..++.+...|.+. +..++..|+.+|..|...+--|    -.|- +..++..
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~----ve-~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNL----VE-PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHH----HH-hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence            467888999999998765532    22 2378888999876 7899999999999987543222    2343 3788888


Q ss_pred             hcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc
Q 041252          242 LNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN  286 (450)
Q Consensus       242 L~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~  286 (450)
                      +...+++++..|..++..+.......  .+  ...++.++.-+..
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~~~~~--~i--~~~~~e~i~~l~~  112 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKKRNPN--II--YNNFPELISSLNN  112 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHhccch--HH--HHHHHHHHHHHhC
Confidence            88889999999999999997552111  12  2345555555554

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=89.27  E-value=6.8  Score=38.93  Aligned_cols=198  Identities=10%  Similarity=0.116  Sum_probs=134.3

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHH-----HHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASA-----RKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE  224 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~-----r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~  224 (450)
                      .+..|+..|...+-+.|..+.....++.......     ...+... .-..+..++....+.++.-.+-.+|+.+..++.
T Consensus        77 ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRec~k~e~  155 (335)
T PF08569_consen   77 LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRECIKHES  155 (335)
T ss_dssp             HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHHHHhhHH
Confidence            4556777777777778877777777666543322     2233332 122333344333355677778889999999988


Q ss_pred             hhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-ChhhHhhh--hhHHHHHHHHHhcCCCccchhHHHHHHH
Q 041252          225 SKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD-FRPEIVSS--HRLLIGLMRLVKNKRHPNGILPGLSLLR  301 (450)
Q Consensus       225 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~-~~~~~~~~--~g~l~~Lv~lL~~~~~~~~~~~al~aL~  301 (450)
                      ..+.+.....+..+......++-++...|-.++..|-..+. ...+.+..  ...+...-.+|.++ +=-+++.++..|.
T Consensus       156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL~  234 (335)
T PF08569_consen  156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLLG  234 (335)
T ss_dssp             HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHHH
Confidence            77888888899999999999999999999999998754332 22222211  24566666777776 4557889999999


Q ss_pred             HhccChHHHHHHHh----cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh
Q 041252          302 SICLLNEVRSLVVS----IGAVPQLVELLPSLDPDCLQLALCILDALSSLPE  349 (450)
Q Consensus       302 ~Ls~~~~~~~~iv~----~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e  349 (450)
                      .|-.+..|...|..    ..-+..++.+|++.+..++-.|..+......+|.
T Consensus       235 ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~  286 (335)
T PF08569_consen  235 ELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN  286 (335)
T ss_dssp             HHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred             HHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence            99987777654443    4677888999999999999999999998776653

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=89.26  E-value=0.76  Score=28.23  Aligned_cols=28  Identities=21%  Similarity=0.420  Sum_probs=24.6

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 041252          235 VSLLVDMLNEGSVETKINCTRLIEKLME  262 (450)
Q Consensus       235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~  262 (450)
                      +|.++++++++++++|..|+.+|..+++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.25  E-value=3  Score=36.88  Aligned_cols=108  Identities=18%  Similarity=0.223  Sum_probs=70.8

Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh--hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc----cCh
Q 041252          234 KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV--SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC----LLN  307 (450)
Q Consensus       234 ~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~--~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls----~~~  307 (450)
                      -+..+..+|++.+.+.|-.++.++..+...++  .+++  .....+..|+.+|++...+.+.+.+..+|..|.    ..+
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            35667778888899999999999988876653  2344  233478999999998655666778888877775    333


Q ss_pred             HHHHHHHh---cCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252          308 EVRSLVVS---IGAVPQLVELLPSLDPDCLQLALCILDALS  345 (450)
Q Consensus       308 ~~~~~iv~---~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~  345 (450)
                      +...++.-   .+.++.++.++++  ....+.++.+|..+-
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll  142 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL  142 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence            33333332   2455566666653  455666666666554

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=88.93  E-value=34  Score=36.15  Aligned_cols=278  Identities=15%  Similarity=0.144  Sum_probs=150.6

Q ss_pred             hhhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCCh--HHHHhhhCCCCChhhHHHHHHHHHh-cCC-
Q 041252          147 VQGRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGV--ALISSLLGPFTSHAVGSEAVGVLVN-LTL-  221 (450)
Q Consensus       147 ~~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i--~~Lv~lL~~~~~~~v~~~Al~~L~~-Ls~-  221 (450)
                      +++....++...... ....+..++..+...|.... -...+...+.|  ......++..++..++-.|+++|.+ |-. 
T Consensus       131 wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~-Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv  209 (858)
T COG5215         131 WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEA-PEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV  209 (858)
T ss_pred             chHHHHHHHHhccccCchHhHHHHHHHHHHHhhccC-HHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence            344455555555443 34578889999988886432 23344444443  2333566666677888889999887 322 


Q ss_pred             -----CchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCChhhHhhhhhHHHHHHHHHhcCCCccchhH
Q 041252          222 -----DSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEE-KDFRPEIVSSHRLLIGLMRLVKNKRHPNGILP  295 (450)
Q Consensus       222 -----~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~  295 (450)
                           .+++|..+     ++..++.-+..+.+++..|-.+|..+..- -+..+-.+ +.-+...+.+..++. +.++...
T Consensus       210 ~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ym-E~aL~alt~~~mks~-nd~va~q  282 (858)
T COG5215         210 QGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYM-ENALAALTGRFMKSQ-NDEVAIQ  282 (858)
T ss_pred             HHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCc-chHHHHH
Confidence                 33344444     45556667777899999998888877532 22222222 222223333444444 4555555


Q ss_pred             HHHHHHHhccCh-H--------------HH--HHHHhcCCHHHHHHhcCC--CC-----hhHHHHHHHHHH---HhcCCh
Q 041252          296 GLSLLRSICLLN-E--------------VR--SLVVSIGAVPQLVELLPS--LD-----PDCLQLALCILD---ALSSLP  348 (450)
Q Consensus       296 al~aL~~Ls~~~-~--------------~~--~~iv~~G~v~~Lv~lL~~--~~-----~~~~~~al~~L~---~L~~~~  348 (450)
                      +...-..+|..+ +              |.  .+..-+.++|.|+.+|..  .+     =.....|...|.   .++.+.
T Consensus       283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~  362 (858)
T COG5215         283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK  362 (858)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH
Confidence            555443444211 0              10  111123588999999943  11     123333333443   333321


Q ss_pred             hhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041252          349 EGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK  428 (450)
Q Consensus       349 e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~  428 (450)
                           |.+  ..+.-+=+-+.+.+-..+|.|+.++..+.....+.+....+ ..++|.+..++...| --+|..+++.+.
T Consensus       363 -----i~~--pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~-l~vk~ttAwc~g  433 (858)
T COG5215         363 -----IMR--PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSC-LWVKSTTAWCFG  433 (858)
T ss_pred             -----hHH--HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccce-eehhhHHHHHHH
Confidence                 111  01111123344455577888999998886654333333323 456788888876553 446777777787


Q ss_pred             HHHhhcCCCcccccc
Q 041252          429 LCSLNYTDTTFISKC  443 (450)
Q Consensus       429 ~ls~~~~~~~~i~~~  443 (450)
                      .++.+  -...|++|
T Consensus       434 ~iad~--va~~i~p~  446 (858)
T COG5215         434 AIADH--VAMIISPC  446 (858)
T ss_pred             HHHHH--HHHhcCcc
Confidence            77776  23344444

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.88  E-value=0.34  Score=46.96  Aligned_cols=49  Identities=14%  Similarity=0.141  Sum_probs=39.3

Q ss_pred             CCC--CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252           65 EIP--SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL  114 (450)
Q Consensus        65 ~~p--~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l  114 (450)
                      ++|  ++-+||||-----..|..||||.-|..||.+++.+ ...|=.|+...
T Consensus       416 ~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv  466 (489)
T KOG4692|consen  416 DLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTV  466 (489)
T ss_pred             CCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEeccee
Confidence            555  57899999876677778899999999999999986 56676665543

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=88.79  E-value=19  Score=35.09  Aligned_cols=161  Identities=19%  Similarity=0.149  Sum_probs=99.2

Q ss_pred             HHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-C-chhhh------
Q 041252          156 GTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-D-SESKT------  227 (450)
Q Consensus       156 ~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~-~~~k~------  227 (450)
                      ..+++.+..+|..|+++|...+--+.+.-.    . .++.+...+... +..++..|+.++..+.. + .+...      
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~----~-~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~  107 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCLLDKELAK----E-HLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFDSESDND  107 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhChHHHH----H-HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence            556777789999999999988875542211    1 267777777554 78899999999988432 2 12111      


Q ss_pred             -hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhh-hhHHHHHHHHHhcCCCcc--chhHHHHH-HHH
Q 041252          228 -NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSS-HRLLIGLMRLVKNKRHPN--GILPGLSL-LRS  302 (450)
Q Consensus       228 -~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~-~g~l~~Lv~lL~~~~~~~--~~~~al~a-L~~  302 (450)
                       .......+..+.+.|.+.+++++..|+..+..|.-.+.     +.. ..++..|+-+.-++...+  -.+.++.. +-.
T Consensus       108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~-----i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~  182 (298)
T PF12719_consen  108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR-----ISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPV  182 (298)
T ss_pred             ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHH
Confidence             12234567788888888899999999999988854432     222 455666655544432211  23344443 334


Q ss_pred             hcc-ChHHHHHHHhcCCHHHHHHhcCC
Q 041252          303 ICL-LNEVRSLVVSIGAVPQLVELLPS  328 (450)
Q Consensus       303 Ls~-~~~~~~~iv~~G~v~~Lv~lL~~  328 (450)
                      .+. +.+++ ..+..+.++.+-.+.+.
T Consensus       183 y~~s~~~~Q-~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  183 YASSSPENQ-ERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHcCCHHHH-HHHHHHHHHHHHHHHhC
Confidence            554 44454 44555566666665543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=88.63  E-value=0.5  Score=29.05  Aligned_cols=28  Identities=32%  Similarity=0.455  Sum_probs=24.8

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252          319 VPQLVELLPSLDPDCLQLALCILDALSS  346 (450)
Q Consensus       319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~  346 (450)
                      +|.+++++.+.+++++..|+.+|..++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=88.53  E-value=4.2  Score=44.57  Aligned_cols=170  Identities=19%  Similarity=0.258  Sum_probs=109.4

Q ss_pred             HHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchH--HHHHHhcCC-CHH
Q 041252          172 ELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVS--LLVDMLNEG-SVE  248 (450)
Q Consensus       172 ~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~--~Lv~lL~~~-~~~  248 (450)
                      .|.....+++++.+.+.+.||...+...++.++..+.+..+++.+.+++...+.+...+.-..+.  ..-.+++.- +.+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            56678888899999999999999999999988778899999999999887665554433222222  222233333 346


Q ss_pred             HHHHHHHHHHHHhccCCChhhHh-----------------------hhhhHHHH-HHHHHhcCCCccchhHHHHHHHHhc
Q 041252          249 TKINCTRLIEKLMEEKDFRPEIV-----------------------SSHRLLIG-LMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       249 ~~~~aa~~L~~La~~~~~~~~~~-----------------------~~~g~l~~-Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                      .-.+|+.+|..+..+.+......                       .....+.+ ..+++.....+..+..|++++.++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~  653 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL  653 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence            77778888877754422110000                       00122223 4445555445667778888888887


Q ss_pred             -cChHHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHH
Q 041252          305 -LLNEVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCIL  341 (450)
Q Consensus       305 -~~~~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L  341 (450)
                       .+++++..+.+.|+++.+.+.-... ...+++.+...+
T Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence             5667888888889888877765221 344444444443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=88.32  E-value=4.9  Score=35.23  Aligned_cols=131  Identities=16%  Similarity=0.110  Sum_probs=82.7

Q ss_pred             CccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHH
Q 041252          289 HPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRL  367 (450)
Q Consensus       289 ~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~l  367 (450)
                      .++++..++-++..+-  +..+....+. .-+.+-..+...+.+-...++.+|..|-.. ++-...+...+|.++.++.+
T Consensus        18 ~~~~r~~a~v~l~k~l--~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   18 PEEVRSHALVILSKLL--DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             SCCHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHH--HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            4667777777776662  3333333221 122344444555556777888888888754 77777776658999999999


Q ss_pred             Hh--cCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHH-HHHHHHH
Q 041252          368 LM--RVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPV-LKQRSAE  425 (450)
Q Consensus       368 L~--~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~-~k~~A~~  425 (450)
                      +.  ..+...+..++.+|..-|...  .++..+.+.| ++.|-.+...+.++. +|-.|+-
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~--~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v  152 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDK--SCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAV  152 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSH--HHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccH--HHHHHHHHHH-HHHHHHHHccccchHHHHHHHHH
Confidence            98  567788888888887755542  4555445555 588888886554555 5555543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=88.31  E-value=13  Score=38.80  Aligned_cols=151  Identities=24%  Similarity=0.314  Sum_probs=104.4

Q ss_pred             HHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCH----HHHHHHHHHHHHHhccCCChhh
Q 041252          194 ALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSV----ETKINCTRLIEKLMEEKDFRPE  269 (450)
Q Consensus       194 ~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~----~~~~~aa~~L~~La~~~~~~~~  269 (450)
                      ..+.+++.++ +...+-.|+..|..++.+..--..+....++..|..+..++..    +.......++..|....-.-.+
T Consensus        86 ~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   86 KRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            3455666665 5566666999999999998888888999999999999987743    3344444444444322211111


Q ss_pred             HhhhhhHHHHHHHHHhcC-CCccchhHHHHHHHHhccChH-HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252          270 IVSSHRLLIGLMRLVKNK-RHPNGILPGLSLLRSICLLNE-VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS  346 (450)
Q Consensus       270 ~~~~~g~l~~Lv~lL~~~-~~~~~~~~al~aL~~Ls~~~~-~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~  346 (450)
                       .....++.....+++.+ .+.++...|+..|-++..... -+..+.+.--+..|+..|..++..++..|++.|-.|-.
T Consensus       165 -~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  165 -SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             -ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence             12334555555555432 345677889999998885544 66677788899999999998898888888888887763

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=87.85  E-value=3.5  Score=35.56  Aligned_cols=77  Identities=18%  Similarity=0.232  Sum_probs=64.4

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252          360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD  436 (450)
Q Consensus       360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~  436 (450)
                      ++..|.+-|.+.++.++-.|+.+|-.+.+++......++...+.+..|..++....++.+|+++..++..-+...++
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  118 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN  118 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            56678888888899999999999999999886666667778889999999987666789999999999988776544

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=87.84  E-value=13  Score=42.39  Aligned_cols=232  Identities=19%  Similarity=0.190  Sum_probs=133.3

Q ss_pred             HHHHHHHhhcc-chHHHHHHHHHHHHHHHH-cHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhc-CCCc---h
Q 041252          151 ASELLGTLKKV-KGQARVQALKELHQIAAA-HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNL-TLDS---E  224 (450)
Q Consensus       151 i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~L-s~~~---~  224 (450)
                      +.-+...++.. ..+.+.+|+.-|+.++.. +.+++-    -.++|-++.++... ...|+..|+.+|..+ +.-.   .
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCc
Confidence            34444455542 356788899999988863 233322    23579999999875 678999999888873 3211   1


Q ss_pred             hhhhccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhc-----------------cCCChh----hHhh--h----hhH
Q 041252          225 SKTNLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLME-----------------EKDFRP----EIVS--S----HRL  276 (450)
Q Consensus       225 ~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~-----------------~~~~~~----~~~~--~----~g~  276 (450)
                      .-..|.-.=.+|.|-.++.. ....+|..=|..|..||.                 .++.+.    +.-.  .    ...
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~  578 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT  578 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence            22234444557777777765 333333333333333320                 111111    0000  0    012


Q ss_pred             HHHH-HHHHhcCCCccchhHHHHHHHHhcc-Ch---------------------HHHHHH---------------HhcCC
Q 041252          277 LIGL-MRLVKNKRHPNGILPGLSLLRSICL-LN---------------------EVRSLV---------------VSIGA  318 (450)
Q Consensus       277 l~~L-v~lL~~~~~~~~~~~al~aL~~Ls~-~~---------------------~~~~~i---------------v~~G~  318 (450)
                      +..+ +.+|.+. .+.++..-+..|.-||. ..                     .-|..+               ++.+.
T Consensus       579 V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyl  657 (1431)
T KOG1240|consen  579 VEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYL  657 (1431)
T ss_pred             HHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHH
Confidence            2222 2334443 45566666666666651 10                     112222               34557


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252          319 VPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA  390 (450)
Q Consensus       319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  390 (450)
                      +|.|.+-|.++.+-+...|+.+|..|+....-++..+-  ..+..+.-+|-+.+.=++..+++++..+...-
T Consensus       658 lPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l  727 (1431)
T KOG1240|consen  658 LPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQL  727 (1431)
T ss_pred             HHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence            78888888888999999999999999987655554432  24555555566667778889999998876543

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=87.80  E-value=0.46  Score=43.57  Aligned_cols=57  Identities=25%  Similarity=0.272  Sum_probs=42.7

Q ss_pred             eeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcC-CCCCCC--cCCcCCCCCCcchHHH
Q 041252           69 VFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLG-RYTCPT--TMQELWDDSVTPNKTL  125 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~-~~~cP~--~~~~l~~~~l~~n~~L  125 (450)
                      +.+|||+.+....|++- .|.|.|++..|...++.. ...||.  |-+....+.+..++-|
T Consensus       189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il  249 (275)
T COG5627         189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL  249 (275)
T ss_pred             cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence            46899999999999874 599999999999998831 345776  3344555666666654

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=87.77  E-value=23  Score=36.25  Aligned_cols=112  Identities=17%  Similarity=0.156  Sum_probs=75.9

Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CC-------ChhhHhhhh----hHHHHHHHHHhcCCCccchhHHHHHHH
Q 041252          234 KVSLLVDMLNEGSVETKINCTRLIEKLMEE-KD-------FRPEIVSSH----RLLIGLMRLVKNKRHPNGILPGLSLLR  301 (450)
Q Consensus       234 ~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~-------~~~~~~~~~----g~l~~Lv~lL~~~~~~~~~~~al~aL~  301 (450)
                      .+..|+.+|.+  ++....|+..+.-|..+ ++       .....+...    -.+|.|++-.+.. +...+.+-+.||.
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs  348 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALS  348 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHH
Confidence            46777777765  67788899999888655 21       222223333    3456666655553 3336677888888


Q ss_pred             HhccChHHHHHHHh-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCh
Q 041252          302 SICLLNEVRSLVVS-IGAVPQLVELLPSLDPDCLQLALCILDALSSLP  348 (450)
Q Consensus       302 ~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~  348 (450)
                      .+-.+-.....+-+ ...+|.|++-|+..+.+++..++.+|..+....
T Consensus       349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            88765443333334 468899999998889999999999999887643

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=87.62  E-value=12  Score=41.37  Aligned_cols=178  Identities=16%  Similarity=0.166  Sum_probs=113.7

Q ss_pred             CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHh
Q 041252          246 SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVEL  325 (450)
Q Consensus       246 ~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~l  325 (450)
                      .+.++..|..++..-++..   .-.--..+++.+|+.+.... +.++......+|...+..+.......+.-..|.++.+
T Consensus       504 ~~~~ki~a~~~~~~~~~~~---vl~~~~p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~l  579 (1005)
T KOG2274|consen  504 PPPVKISAVRAFCGYCKVK---VLLSLQPMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINL  579 (1005)
T ss_pred             CCchhHHHHHHHHhccCce---eccccchHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHH
Confidence            5566777766666555221   11113457888888887654 5667777788888888666555566666677777666


Q ss_pred             c--CCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCC----hHHHHHHHHHHHHhcccCchhHHHHHH
Q 041252          326 L--PSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVS----EDCTQYALSILWSICKIAPEECSSAAV  399 (450)
Q Consensus       326 L--~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s----~~~~e~A~~~L~~L~~~~~~~~~~~~~  399 (450)
                      .  .+.++.+...+--++..|+...++..-+.+  -.||.+|..|....    .....-|+.+|..+-+..+...-+..+
T Consensus       580 F~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~  657 (1005)
T KOG2274|consen  580 FLKYSEDPQVASLAQDLFEELLQIAANYGPMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI  657 (1005)
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH
Confidence            5  556788888888888888876555555543  57999999997653    344555677777666666554333333


Q ss_pred             hcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252          400 DAGLAAKLFLVIQSGCNPVLKQRSAELLKLC  430 (450)
Q Consensus       400 ~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l  430 (450)
                      . -++|.+....-+..+.++-++|-+.||-+
T Consensus       658 ~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~  687 (1005)
T KOG2274|consen  658 C-YAFPAVAKITLHSDDHETLQNATECLRAL  687 (1005)
T ss_pred             H-HHhHHhHhheeecCChHHHHhHHHHHHHH
Confidence            3 24566655543332555667777766654

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=87.45  E-value=0.26  Score=53.68  Aligned_cols=51  Identities=22%  Similarity=0.479  Sum_probs=39.0

Q ss_pred             CCCCeeeCcCCCCCCC--C---CeeC--CCCCcccHHHHHHHHhc-CCCCCCCcCCcCC
Q 041252           65 EIPSVFVCPISLEPMQ--D---PVTL--CTGQTYERSNILKWFSL-GRYTCPTTMQELW  115 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~--d---Pv~~--~~g~ty~r~~I~~~~~~-~~~~cP~~~~~l~  115 (450)
                      ....+--|+||--++.  |   |--.  .|.|.|--+|+.+|+.. ++.+||.||..++
T Consensus      1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            4555567999988876  3   5433  38899999999999985 5678999996553

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=87.33  E-value=2.3  Score=39.30  Aligned_cols=96  Identities=18%  Similarity=0.151  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCC-----hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHH
Q 041252          332 DCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVS-----EDCTQYALSILWSICKIAPEECSSAAVDAGLAAK  406 (450)
Q Consensus       332 ~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s-----~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~  406 (450)
                      .-.-.|+.+|..++++|+.|..+.+ +..---+...|...+     +..+-.+++++.++.++++...........++|.
T Consensus       115 nRvcnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL  193 (315)
T COG5209         115 NRVCNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL  193 (315)
T ss_pred             hHHHHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence            3456789999999999999999998 554333344443322     3456678999999999887666677778899999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHH
Q 041252          407 LFLVIQSGCNPVLKQRSAELLKL  429 (450)
Q Consensus       407 L~~ll~s~~~~~~k~~A~~lL~~  429 (450)
                      ++.++..| ++..|--|.-++..
T Consensus       194 cLrIme~g-SElSktvaifI~qk  215 (315)
T COG5209         194 CLRIMELG-SELSKTVAIFIFQK  215 (315)
T ss_pred             HHHHHHhh-hHHHHHHHHHHHHH
Confidence            99999998 66666666655554

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.33  E-value=11  Score=42.49  Aligned_cols=253  Identities=17%  Similarity=0.183  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCC---
Q 041252          170 LKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGS---  246 (450)
Q Consensus       170 l~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~---  246 (450)
                      -..|-.+.+++.+|.+.+.++.|+..++.++-   +++-+...+.++..|-..+.-   -++..-+-.+|..|+++-   
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpfli---ndehRSslLrivscLitvdpk---qvhhqelmalVdtLksgmvt~  736 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLI---NDEHRSSLLRIVSCLITVDPK---QVHHQELMALVDTLKSGMVTR  736 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeee---chHHHHHHHHHHHHHhccCcc---cccHHHHHHHHHHHHhcceec
Confidence            45677788889999999999999999998883   345566566666554332211   112334567777777642   


Q ss_pred             ---------HHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc-----CCCcc----chhHHHHHHH---Hh--
Q 041252          247 ---------VETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN-----KRHPN----GILPGLSLLR---SI--  303 (450)
Q Consensus       247 ---------~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~-----~~~~~----~~~~al~aL~---~L--  303 (450)
                               ........++++.....+...+..+++.+++..|...|..     +-+++    +...-...|.   .+  
T Consensus       737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav  816 (2799)
T KOG1788|consen  737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV  816 (2799)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence                     1233445567777765555555567777777777666542     00111    1112222222   22  


Q ss_pred             ccChHHHHHH-------------HhcC---------CHHHHHHhc----CCCChhHHHHHHHHHHHhcCC------h---
Q 041252          304 CLLNEVRSLV-------------VSIG---------AVPQLVELL----PSLDPDCLQLALCILDALSSL------P---  348 (450)
Q Consensus       304 s~~~~~~~~i-------------v~~G---------~v~~Lv~lL----~~~~~~~~~~al~~L~~L~~~------~---  348 (450)
                      |.+..|+..+             .+.|         .|..|.++-    .......--.|+..+-.+-.+      |   
T Consensus       817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq  896 (2799)
T KOG1788|consen  817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ  896 (2799)
T ss_pred             hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence            3444555432             2233         222222221    101111111222222222211      1   


Q ss_pred             --hhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHH---HcCCCHHHHHHH
Q 041252          349 --EGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVI---QSGCNPVLKQRS  423 (450)
Q Consensus       349 --e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll---~s~~~~~~k~~A  423 (450)
                        ..++.|.. +|++..+++.+...+++.+-.-+..+..+++.++.. +...-..|.+..|+.++   .+|++|-. ..|
T Consensus       897 fnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspfn-aelltS~gcvellleIiypflsgsspfL-sha  973 (2799)
T KOG1788|consen  897 FNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFN-AELLTSAGCVELLLEIIYPFLSGSSPFL-SHA  973 (2799)
T ss_pred             cCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCc-hhhhhcccHHHHHHHHhhhhhcCCchHh-hcc
Confidence              23566777 899999999999999999988889999999888744 33334579999888877   45655543 444


Q ss_pred             HHHHHHHH
Q 041252          424 AELLKLCS  431 (450)
Q Consensus       424 ~~lL~~ls  431 (450)
                      ..++.++.
T Consensus       974 lkIvemLg  981 (2799)
T KOG1788|consen  974 LKIVEMLG  981 (2799)
T ss_pred             HHHHHHHh
Confidence            44554443

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=87.23  E-value=3.8  Score=35.42  Aligned_cols=77  Identities=13%  Similarity=0.208  Sum_probs=64.5

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252          360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD  436 (450)
Q Consensus       360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~  436 (450)
                      ++..|.+-|.+.++.++-.|+.+|-.+.+++......++.....+..|..++....++.+|++...+++..+....+
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            45677788888889999999999999999997666677778888899999997756889999999999998877543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=87.13  E-value=36  Score=34.44  Aligned_cols=82  Identities=10%  Similarity=0.111  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhC-CC--CChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHH
Q 041252          164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLG-PF--TSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD  240 (450)
Q Consensus       164 ~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-~~--~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~  240 (450)
                      .+-..|+..+..+..++|..-..+.++|.++.++..+. ..  .+.++....-.++..|+.+....+.+.+.+.++.+++
T Consensus       124 ~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~  203 (379)
T PF06025_consen  124 SVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFE  203 (379)
T ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHH
Confidence            45566888888899899999899999999999998776 32  1345555555666668899999999999999999999


Q ss_pred             HhcCC
Q 041252          241 MLNEG  245 (450)
Q Consensus       241 lL~~~  245 (450)
                      ++.+.
T Consensus       204 if~s~  208 (379)
T PF06025_consen  204 IFTSP  208 (379)
T ss_pred             HhCCH
Confidence            88643

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PLN02195 cellulose synthase A

Probab=86.88  E-value=0.55  Score=52.10  Aligned_cols=45  Identities=13%  Similarity=0.157  Sum_probs=37.9

Q ss_pred             eCcCCCC-----CCCCCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           71 VCPISLE-----PMQDPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        71 ~Cpi~~~-----~m~dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      .|.||++     .+-+|-+++  ||+-.||.|.|-=-++|+..||+|+.++.
T Consensus         8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk   59 (977)
T PLN02195          8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD   59 (977)
T ss_pred             cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence            6999997     456888875  99999999996556678999999998876

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=86.82  E-value=27  Score=36.88  Aligned_cols=25  Identities=16%  Similarity=0.117  Sum_probs=16.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhc
Q 041252          363 NTVRLLMRVSEDCTQYALSILWSIC  387 (450)
Q Consensus       363 ~Lv~lL~~~s~~~~e~A~~~L~~L~  387 (450)
                      .|-+.+....+++++.|.-.|.++-
T Consensus       530 ~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         530 ALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhhh
Confidence            3445555566777777777776664

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=86.72  E-value=49  Score=37.11  Aligned_cols=228  Identities=14%  Similarity=0.175  Sum_probs=122.6

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHH-HHHHhhCChHHHH-hhhCCC-CChhhHHHHHH-HHHhcCCCch
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASAR-KTMVDEGGVALIS-SLLGPF-TSHAVGSEAVG-VLVNLTLDSE  224 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r-~~i~~~G~i~~Lv-~lL~~~-~~~~v~~~Al~-~L~~Ls~~~~  224 (450)
                      ..+..+++.|+..++++|.-|+++|.-+++.=.+.+ +.+     +.-|+ .++... +...+..-++. .+.|+.-   
T Consensus        47 kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~-----ve~L~~~~~s~keq~rdissi~Lktvi~nl~P---  118 (1233)
T KOG1824|consen   47 KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETI-----VENLCSNMLSGKEQLRDISSIGLKTVIANLPP---  118 (1233)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHH-----HHHHhhhhccchhhhccHHHHHHHHHHhcCCC---
Confidence            457788999999999999999999999986433222 122     22233 233221 01122222222 2222331   


Q ss_pred             hhhhccCCCchHHHHHHhcC-----C-CHHHHHHHHHHHHHHh-ccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHH
Q 041252          225 SKTNLMQPAKVSLLVDMLNE-----G-SVETKINCTRLIEKLM-EEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGL  297 (450)
Q Consensus       225 ~k~~i~~~g~i~~Lv~lL~~-----~-~~~~~~~aa~~L~~La-~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al  297 (450)
                      .-.....+...+.+...|..     + ...++-.+..++...- ...+....  -..+.+..++.-+.+. ...+++.+.
T Consensus       119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~--fh~~il~~l~~ql~s~-R~aVrKkai  195 (1233)
T KOG1824|consen  119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN--FHLSILKCLLPQLQSP-RLAVRKKAI  195 (1233)
T ss_pred             ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc--hHHHHHHHHhhcccCh-HHHHHHHHH
Confidence            11222233344444444432     1 2335666666665542 22222211  1234455555555554 355778899


Q ss_pred             HHHHHhccC--hHHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHH---hcC
Q 041252          298 SLLRSICLL--NEVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLL---MRV  371 (450)
Q Consensus       298 ~aL~~Ls~~--~~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL---~~~  371 (450)
                      .+|..|+..  ...-.     +.+..|+.=|... .+....--+.+|..++.....|.---- ...+|.+++..   ...
T Consensus       196 ~~l~~la~~~~~~ly~-----~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~  269 (1233)
T KOG1824|consen  196 TALGHLASSCNRDLYV-----ELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHL-DKIVPLVADYCNKIEED  269 (1233)
T ss_pred             HHHHHHHHhcCHHHHH-----HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhccc-chhhHHHHHHhcccccC
Confidence            999988742  22222     3345666666433 344555555666666654333332222 35778888887   455


Q ss_pred             ChHHHHHHHHHHHHhcccCchh
Q 041252          372 SEDCTQYALSILWSICKIAPEE  393 (450)
Q Consensus       372 s~~~~e~A~~~L~~L~~~~~~~  393 (450)
                      .++.+|+++.+|..+-..+|.+
T Consensus       270 dDELrE~~lQale~fl~rcp~e  291 (1233)
T KOG1824|consen  270 DDELREYCLQALESFLRRCPKE  291 (1233)
T ss_pred             cHHHHHHHHHHHHHHHHhChhh
Confidence            6799999999998887776643

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=86.64  E-value=0.47  Score=33.37  Aligned_cols=46  Identities=13%  Similarity=-0.052  Sum_probs=33.4

Q ss_pred             eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCC
Q 041252           70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDS  118 (450)
Q Consensus        70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~  118 (450)
                      ..|=.|...=...++++|||..++.|..-+   ...-||.|+.++...+
T Consensus         8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             eeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence            346666666677889999999999984433   2345999999886543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=86.56  E-value=1.4  Score=45.05  Aligned_cols=181  Identities=10%  Similarity=0.032  Sum_probs=105.9

Q ss_pred             hHHHHHHHHHhcCCCchhhhh-ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhc---cCCCh--hhHhhhhh-HHHHH
Q 041252          208 VGSEAVGVLVNLTLDSESKTN-LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLME---EKDFR--PEIVSSHR-LLIGL  280 (450)
Q Consensus       208 v~~~Al~~L~~Ls~~~~~k~~-i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~---~~~~~--~~~~~~~g-~l~~L  280 (450)
                      +...|+.++.-+..|+..+.. +.-..+...+...|.+..-..|+.+++++.+++.   .+...  ...-+..| .+..+
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~  486 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM  486 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence            444555665555666655442 2334556666677777677889999999999852   11111  11111122 23333


Q ss_pred             HHHHhc--CCCccchhHHHHHHHHhccChH----HHHHHHhcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCChhhHHH
Q 041252          281 MRLVKN--KRHPNGILPGLSLLRSICLLNE----VRSLVVSIGAVPQLVELL-PSLDPDCLQLALCILDALSSLPEGKLA  353 (450)
Q Consensus       281 v~lL~~--~~~~~~~~~al~aL~~Ls~~~~----~~~~iv~~G~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~e~r~~  353 (450)
                      .+.-..  .....+..++.++|.|+...-+    --......|.+..++... -.....++.+++.++.||-+++.-+-+
T Consensus       487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq  566 (728)
T KOG4535|consen  487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ  566 (728)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence            333221  1234578899999999983222    111222345555555443 334678999999999999998754322


Q ss_pred             Hhcc-CCChHHHHHHHhcC-ChHHHHHHHHHHHHhcc
Q 041252          354 LKDC-ANTIPNTVRLLMRV-SEDCTQYALSILWSICK  388 (450)
Q Consensus       354 i~~~-~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~  388 (450)
                      -.+- .-..+.|..++... +.+++-+|+++|.....
T Consensus       567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            2211 23577788887665 46788888888866544

>PF04641 Rtf2: Rtf2 RING-finger

Probab=86.51  E-value=0.81  Score=43.81  Aligned_cols=35  Identities=26%  Similarity=0.541  Sum_probs=31.4

Q ss_pred             eeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcC
Q 041252           69 VFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLG  103 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~  103 (450)
                      -++|+|+++.+++||+.+ -|+-|.+..|-+|+...
T Consensus        34 w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~   69 (260)
T PF04641_consen   34 WTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK   69 (260)
T ss_pred             cCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence            578999999999999764 89999999999998863

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=86.33  E-value=0.48  Score=37.65  Aligned_cols=27  Identities=22%  Similarity=0.564  Sum_probs=24.0

Q ss_pred             CCCCcccHHHHHHHHhcCCCCCCCcCCc
Q 041252           86 CTGQTYERSNILKWFSLGRYTCPTTMQE  113 (450)
Q Consensus        86 ~~g~ty~r~~I~~~~~~~~~~cP~~~~~  113 (450)
                      .|.|.|--.||.+|++. ...||.++++
T Consensus        80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKT-RNVCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence            48999999999999997 6789999764

>PLN02189 cellulose synthase

Probab=86.25  E-value=0.5  Score=52.76  Aligned_cols=46  Identities=22%  Similarity=0.208  Sum_probs=37.9

Q ss_pred             eeCcCCCCC-----CCCCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           70 FVCPISLEP-----MQDPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        70 ~~Cpi~~~~-----m~dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      -+|+||++-     +-+|-+.+  ||+-.||.|.|-=.++|+..||.|+.++.
T Consensus        35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~   87 (1040)
T PLN02189         35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK   87 (1040)
T ss_pred             ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence            389999975     44788775  99999999996667778999999998765

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.99  E-value=24  Score=38.56  Aligned_cols=90  Identities=17%  Similarity=0.161  Sum_probs=43.3

Q ss_pred             CccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHH
Q 041252          289 HPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRL  367 (450)
Q Consensus       289 ~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~l  367 (450)
                      ++-+++.|+.|+-.|= .+++.+.+++     ..+=.+|.+.++.+...|+.+....|  |+.-..|-   +-...+-++
T Consensus       156 s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evC--PerldLIH---knyrklC~l  225 (968)
T KOG1060|consen  156 SPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVC--PERLDLIH---KNYRKLCRL  225 (968)
T ss_pred             cHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhc--hhHHHHhh---HHHHHHHhh
Confidence            3445555555555553 2333333333     23444455555566666666555554  33333332   235555555


Q ss_pred             HhcCChHHHHHHHHHHHHhcc
Q 041252          368 LMRVSEDCTQYALSILWSICK  388 (450)
Q Consensus       368 L~~~s~~~~e~A~~~L~~L~~  388 (450)
                      |....+=.|-..+..|..-|+
T Consensus       226 l~dvdeWgQvvlI~mL~RYAR  246 (968)
T KOG1060|consen  226 LPDVDEWGQVVLINMLTRYAR  246 (968)
T ss_pred             ccchhhhhHHHHHHHHHHHHH
Confidence            555555455555555555444

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.92  E-value=0.53  Score=46.19  Aligned_cols=49  Identities=27%  Similarity=0.260  Sum_probs=41.9

Q ss_pred             CeeeCcCCCCCCCC---CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           68 SVFVCPISLEPMQD---PVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        68 ~~~~Cpi~~~~m~d---Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      +...|.|+++.|.|   |.+.+.||+|-..+|+.|-...+-.||.++..+..
T Consensus       329 S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~  380 (389)
T KOG0396|consen  329 SRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRY  380 (389)
T ss_pred             hHHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccH
Confidence            45789999999996   99999999999999999977544789999876643

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=85.54  E-value=1  Score=37.71  Aligned_cols=50  Identities=16%  Similarity=0.312  Sum_probs=40.5

Q ss_pred             CeeeCcCCCCCCCCCeeC----CCCCcccHHHHHHHHhc--CCCCCCCcCCcCCCC
Q 041252           68 SVFVCPISLEPMQDPVTL----CTGQTYERSNILKWFSL--GRYTCPTTMQELWDD  117 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~----~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~  117 (450)
                      .-+.|-||+|.-.|+--+    +||+..|-.|...-|+.  -++.||.|+..+...
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence            568999999999987654    59999999999996553  367899998877543

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=85.35  E-value=30  Score=35.69  Aligned_cols=129  Identities=15%  Similarity=0.197  Sum_probs=86.6

Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHHHHc---HHHHHHHHhhCChHHHHhhhCCCC------ChhhHHHHHHHHHhcCCCc
Q 041252          153 ELLGTLKKVKGQARVQALKELHQIAAAH---ASARKTMVDEGGVALISSLLGPFT------SHAVGSEAVGVLVNLTLDS  223 (450)
Q Consensus       153 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~---~~~r~~i~~~G~i~~Lv~lL~~~~------~~~v~~~Al~~L~~Ls~~~  223 (450)
                      ++..+++..+.+.|..|+--..++++.+   ..+|+.+.++=|.+-+-++|.+..      ++-.+.-++.+|..++.++
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            3455555555667888888888888753   568899999988999999996532      2334556778888777766


Q ss_pred             hhh--hhccCCCchHHHHHHhcCC-CHH------HHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHH
Q 041252          224 ESK--TNLMQPAKVSLLVDMLNEG-SVE------TKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLV  284 (450)
Q Consensus       224 ~~k--~~i~~~g~i~~Lv~lL~~~-~~~------~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL  284 (450)
                      +--  ..+  -..||.|..++..+ +++      ..+.+-.+|...+...... ......|+++.+.++-
T Consensus        95 ElAsh~~~--v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y  161 (698)
T KOG2611|consen   95 ELASHEEM--VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMY  161 (698)
T ss_pred             hhccCHHH--HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHH
Confidence            432  122  24688999998754 333      6677888888887664433 3344567777777653

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=85.32  E-value=31  Score=38.07  Aligned_cols=262  Identities=16%  Similarity=0.085  Sum_probs=128.1

Q ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHH-cHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252          152 SELLGTLKKVKGQARVQALKELHQIAAA-HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM  230 (450)
Q Consensus       152 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~  230 (450)
                      ......++....+.+..+......++.. +...+..+.....+|.+-.+..+. +..++...+..+..++-- -.+..-+
T Consensus       358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~-~~~vr~a~a~~~~~~~p~-~~k~~ti  435 (759)
T KOG0211|consen  358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN-ALHVRSALASVITGLSPI-LPKERTI  435 (759)
T ss_pred             hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc-cchHHHHHhccccccCcc-CCcCcCc
Confidence            3444455555555666666655555542 323344555555566665555443 444554444444333211 0111111


Q ss_pred             CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHH
Q 041252          231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR  310 (450)
Q Consensus       231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~  310 (450)
                       .-..+..+..++...++++.+-...+..+-..++..-.-..+...++.++.+-.+. ...++.+....+..++....  
T Consensus       436 -~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~--  511 (759)
T KOG0211|consen  436 -SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG--  511 (759)
T ss_pred             -cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh--
Confidence             23456666677778889999877666555333433322334556777877765554 45566666677776664332  


Q ss_pred             HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHH---HHHHHHHHhc
Q 041252          311 SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQ---YALSILWSIC  387 (450)
Q Consensus       311 ~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e---~A~~~L~~L~  387 (450)
                      ..+...-..+.+..-+.+...++++.|...|..++..-. ...-..  ..++.++......+-..+.   .++..|..+.
T Consensus       512 ~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~--~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~  588 (759)
T KOG0211|consen  512 VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARL--EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL  588 (759)
T ss_pred             hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHH--HhhHHHHHHhcCcccchhhHHHHHHHHHHHHh
Confidence            122221112222222344445788888877777764322 111111  2344444444443222222   2222222222


Q ss_pred             ccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252          388 KIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLC  430 (450)
Q Consensus       388 ~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l  430 (450)
                      .       ..+...-.++.+..+.... .+.+|-+++..|..+
T Consensus       589 g-------~ei~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i  623 (759)
T KOG0211|consen  589 G-------QEITCEDLLPVFLDLVKDP-VANVRINVAKHLPKI  623 (759)
T ss_pred             c-------cHHHHHHHhHHHHHhccCC-chhhhhhHHHHHHHH
Confidence            2       1222234555555555444 566666666655544

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.18  E-value=64  Score=35.45  Aligned_cols=63  Identities=16%  Similarity=0.259  Sum_probs=36.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252          237 LLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL  305 (450)
Q Consensus       237 ~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~  305 (450)
                      .+-+.....++-+|..||.+|-.|-+-+   .+  ....++..+=.+|.+. ++-+.-.|+.|.-.+|-
T Consensus       147 AIk~~~~D~s~yVRk~AA~AIpKLYsLd---~e--~k~qL~e~I~~LLaD~-splVvgsAv~AF~evCP  209 (968)
T KOG1060|consen  147 AIKKAVTDPSPYVRKTAAHAIPKLYSLD---PE--QKDQLEEVIKKLLADR-SPLVVGSAVMAFEEVCP  209 (968)
T ss_pred             HHHHHhcCCcHHHHHHHHHhhHHHhcCC---hh--hHHHHHHHHHHHhcCC-CCcchhHHHHHHHHhch
Confidence            3333444557888888888888774332   11  1223333333344443 67777777777666663

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.42  E-value=0.38  Score=50.28  Aligned_cols=57  Identities=23%  Similarity=0.396  Sum_probs=39.3

Q ss_pred             eeeCcCCCCCCC----CCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCc-----CCCCCCcchHHHHHHH
Q 041252           69 VFVCPISLEPMQ----DPVTLCTGQTYERSNILKWFSLGRYTCPTTMQE-----LWDDSVTPNKTLYHLI  129 (450)
Q Consensus        69 ~~~Cpi~~~~m~----dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~-----l~~~~l~~n~~L~~~I  129 (450)
                      .++|+||...|-    .||.+-||||.|+.|.+.-..   .+|| |...     .+.++..-|++|.+.+
T Consensus        11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~De~~~~~~~~e~p~n~alL~~~   76 (861)
T KOG3161|consen   11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKRDEDSSLMQLKEEPRNYALLRRE   76 (861)
T ss_pred             HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCccccchhcChhhcchhHHHHHhh
Confidence            467999966554    699999999999999988644   4577 3221     1224555667765554

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.27  E-value=67  Score=34.89  Aligned_cols=93  Identities=11%  Similarity=0.033  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcC-CCChhHHHHHHHHHHHhcCChhhHHHH
Q 041252          276 LLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLP-SLDPDCLQLALCILDALSSLPEGKLAL  354 (450)
Q Consensus       276 ~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~-~~~~~~~~~al~~L~~L~~~~e~r~~i  354 (450)
                      ++..|-++|.+. ..+.+--++..+..|++.+.....+-..  .+.++..|+ +.|..++..|+..|..+|. .+|.+.|
T Consensus       330 ~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD-~~Nak~I  405 (938)
T KOG1077|consen  330 AVNQLGQFLSHR-ETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD-VSNAKQI  405 (938)
T ss_pred             HHHHHHHHhhcc-cccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc-hhhHHHH
Confidence            456777788776 5788888888888888765444333333  667888887 6688999999999999997 4455566


Q ss_pred             hccCCChHHHHHHHhcCChHHHHH
Q 041252          355 KDCANTIPNTVRLLMRVSEDCTQY  378 (450)
Q Consensus       355 ~~~~g~i~~Lv~lL~~~s~~~~e~  378 (450)
                      ++      -+++.|.+.....+|.
T Consensus       406 V~------elLqYL~tAd~siree  423 (938)
T KOG1077|consen  406 VA------ELLQYLETADYSIREE  423 (938)
T ss_pred             HH------HHHHHHhhcchHHHHH
Confidence            54      4666666655555544

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=84.22  E-value=7  Score=33.15  Aligned_cols=77  Identities=13%  Similarity=0.162  Sum_probs=61.2

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhhcCC
Q 041252          360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS--GCNPVLKQRSAELLKLCSLNYTD  436 (450)
Q Consensus       360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s--~~~~~~k~~A~~lL~~ls~~~~~  436 (450)
                      ++..|-+-|.+.++.++..|+.+|-.+.+++......++.....+..|+.++..  ..++.+|+++..++...+....+
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            455777888888999999999999999998876555566655566668888865  45789999999999998887654

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit

Probab=83.43  E-value=0.77  Score=51.49  Aligned_cols=45  Identities=20%  Similarity=0.255  Sum_probs=37.2

Q ss_pred             eCcCCCCC-----CCCCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           71 VCPISLEP-----MQDPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        71 ~Cpi~~~~-----m~dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      +|.||++-     .-+|-+++  ||+-.||.|.|-=.++|+..||+|+.++.
T Consensus        19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk   70 (1079)
T PLN02638         19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK   70 (1079)
T ss_pred             eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence            79999975     44788875  99999999996556778999999998764

>PLN02436 cellulose synthase A

Probab=83.41  E-value=0.77  Score=51.42  Aligned_cols=46  Identities=17%  Similarity=0.203  Sum_probs=37.9

Q ss_pred             eeCcCCCCC-----CCCCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           70 FVCPISLEP-----MQDPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        70 ~~Cpi~~~~-----m~dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      -+|.||++-     .-+|-+++  ||+-.||.|.+-=.++|+..||.|+.++.
T Consensus        37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~   89 (1094)
T PLN02436         37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK   89 (1094)
T ss_pred             ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence            389999965     34688875  99999999996667778999999998765

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.36  E-value=0.55  Score=46.02  Aligned_cols=46  Identities=22%  Similarity=0.305  Sum_probs=35.9

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL  114 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l  114 (450)
                      ..|..-.|-||.+-..+-+-++|||+.|  |+.....  ...||.|++..
T Consensus       301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI  346 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRI  346 (355)
T ss_pred             ccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHH
Confidence            4455678999999999999999999988  6555433  35599998754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=83.32  E-value=18  Score=38.65  Aligned_cols=166  Identities=13%  Similarity=0.164  Sum_probs=93.8

Q ss_pred             hhhCCCCChhhHHHHHHHHHhcCCCchhhhhccC----CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhh
Q 041252          198 SLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQ----PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSS  273 (450)
Q Consensus       198 ~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~----~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~  273 (450)
                      ..+... ..+.+-.|+.+|+.+..+...-..+..    ...+..++..++ .++..+..++++|.|+-.+.. ..+.+.+
T Consensus       551 ~~l~~w-p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~-g~~~~~s  627 (745)
T KOG0301|consen  551 AILLQW-PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPA-GRELFMS  627 (745)
T ss_pred             HHHhcC-CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHH-HHHHHHH
Confidence            333343 456777888888887665544333322    224555555554 667788888999999966543 3333322


Q ss_pred             h-hHHHHHHHHHhcCCCccchhHHHHHHHHhc--cChHHHHHHHhcCCHHHHHHhcCC-----CChhHHHHHHHHHHHhc
Q 041252          274 H-RLLIGLMRLVKNKRHPNGILPGLSLLRSIC--LLNEVRSLVVSIGAVPQLVELLPS-----LDPDCLQLALCILDALS  345 (450)
Q Consensus       274 ~-g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls--~~~~~~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~al~~L~~L~  345 (450)
                      . ..+...+.-.+...+.+++.+.+....|++  ....+-    +.|+.+.|...+..     .+.+..-.++-+|.+|+
T Consensus       628 ~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~  703 (745)
T KOG0301|consen  628 RLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM  703 (745)
T ss_pred             HHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence            2 211111111222323455555555555555  222221    14555555554422     24456677888999999


Q ss_pred             CChhhHHHHhccCCChHHHHHHHhcC
Q 041252          346 SLPEGKLALKDCANTIPNTVRLLMRV  371 (450)
Q Consensus       346 ~~~e~r~~i~~~~g~i~~Lv~lL~~~  371 (450)
                      ..+.+..++.. .-.+..+++.+...
T Consensus       704 t~~~~~~~~A~-~~~v~sia~~~~~~  728 (745)
T KOG0301|consen  704 TVDASVIQLAK-NRSVDSIAKKLKEA  728 (745)
T ss_pred             cccHHHHHHHH-hcCHHHHHHHHHHh
Confidence            88877777766 45678888777653

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=83.06  E-value=59  Score=33.30  Aligned_cols=186  Identities=15%  Similarity=0.119  Sum_probs=111.6

Q ss_pred             chHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccch----hHHHHHHHHhcc-Ch
Q 041252          234 KVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGI----LPGLSLLRSICL-LN  307 (450)
Q Consensus       234 ~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~----~~al~aL~~Ls~-~~  307 (450)
                      .+..++.+..+ .+...+..++.++..|...-....   .-...+..+...+.........    ....|....|.. ..
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~  266 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH  266 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence            56666666554 467778888888888863311111   0122334443333111122223    333344444442 11


Q ss_pred             HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhh-------------HHHHhccCCChHHHHHHHhcCCh
Q 041252          308 EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEG-------------KLALKDCANTIPNTVRLLMRVSE  373 (450)
Q Consensus       308 ~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~-------------r~~i~~~~g~i~~Lv~lL~~~s~  373 (450)
                      ..-     ...+..|+++|.+  +++...+...+..|... ++.             |+.+..  -.+|.|++.....+.
T Consensus       267 ~~~-----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~~  337 (415)
T PF12460_consen  267 PLA-----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEADD  337 (415)
T ss_pred             chH-----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcCh
Confidence            111     1235578888875  66778888888887765 331             344433  468888888887777


Q ss_pred             HHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          374 DCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       374 ~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      ..+.+-+.+|..+-++-|...... --..++|.|++-+..+ ++.++..+...|+.+-..
T Consensus       338 ~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  338 EIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEE  395 (415)
T ss_pred             hhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHc
Confidence            788999999999999888543211 1135778888888666 677888888888876554

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=82.99  E-value=0.27  Score=55.44  Aligned_cols=46  Identities=20%  Similarity=0.322  Sum_probs=39.4

Q ss_pred             CCCCeeeCcCCCCCCC-CCeeCCCCCcccHHHHHHHHhcCCCCCCCcC
Q 041252           65 EIPSVFVCPISLEPMQ-DPVTLCTGQTYERSNILKWFSLGRYTCPTTM  111 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~-dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~  111 (450)
                      .+-.++.|+||.++|+ .=-+.-|||.||-.|++-|+.. +..||.|+
T Consensus      1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred             HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence            3444679999999999 5557789999999999999997 67899996

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=82.75  E-value=21  Score=28.66  Aligned_cols=72  Identities=25%  Similarity=0.210  Sum_probs=56.2

Q ss_pred             HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHH
Q 041252          270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILD  342 (450)
Q Consensus       270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~  342 (450)
                      +......+..|++..... +......++..|..|..++.....+.+.|++..|-++=+.-++..+...-.++.
T Consensus        25 l~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~   96 (98)
T PF14726_consen   25 LVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD   96 (98)
T ss_pred             HccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            345667888999988876 455788999999999999999999999999999777766556666665555544

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=82.69  E-value=6.9  Score=33.52  Aligned_cols=77  Identities=16%  Similarity=0.151  Sum_probs=61.7

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHH---HHHHHHHHHHHHHhhcCC
Q 041252          360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPV---LKQRSAELLKLCSLNYTD  436 (450)
Q Consensus       360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~---~k~~A~~lL~~ls~~~~~  436 (450)
                      ++..|-+-|.+.++.++..|+.+|-.+.+++......++.....+..|..++.+.....   +|+++..++..-+..+++
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~  122 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKS  122 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCC
Confidence            35577888888999999999999999999886666666666778888999887654544   899999999888777644

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.64  E-value=61  Score=35.96  Aligned_cols=210  Identities=14%  Similarity=0.071  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHH-HHhc
Q 041252          208 VGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMR-LVKN  286 (450)
Q Consensus       208 v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~-lL~~  286 (450)
                      ++..++..|+.+.....-+..+...+.+......|++.+.-+--+|...+..|++..+        ..+++.|.. -.+.
T Consensus       743 ik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~dL~e~Y~s~  814 (982)
T KOG4653|consen  743 IKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPDLSEEYLSE  814 (982)
T ss_pred             chHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHHHHHHHHhc
Confidence            3444555555555444344455566777777777777766666666665555654321        233455555 2222


Q ss_pred             CCC--ccchhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh--hHHHHhccCCCh
Q 041252          287 KRH--PNGILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPE--GKLALKDCANTI  361 (450)
Q Consensus       287 ~~~--~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e--~r~~i~~~~g~i  361 (450)
                      +..  ++.+-..-.|+.++.. -.+-...-.+ -.+...+..+++++...+..+++.|.+||.--.  ....+.+   ..
T Consensus       815 k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e---v~  890 (982)
T KOG4653|consen  815 KKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE---VL  890 (982)
T ss_pred             ccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH---HH
Confidence            211  2333444466666652 2221111111 234556666777778889999999999996422  2223333   45


Q ss_pred             HHHHHHHhc-CChHHHHHHHHHHHHhcccCchhHHHHHH---hcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252          362 PNTVRLLMR-VSEDCTQYALSILWSICKIAPEECSSAAV---DAGLAAKLFLVIQSGCNPVLKQRSAELLKLC  430 (450)
Q Consensus       362 ~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~---~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l  430 (450)
                      ..++.+.+. ++..+++.|+-++..+-.... +..-.+.   --.....+....+....+.+|-.|...+..+
T Consensus       891 ~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg-~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  891 QLILSLETTDGSVLVRRAAVHLLAELLNGTG-EDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             HHHHHHHccCCchhhHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            555565554 567889999988887644333 2211111   2244455666666655666777766555443

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=82.11  E-value=7.9  Score=33.21  Aligned_cols=78  Identities=17%  Similarity=0.128  Sum_probs=63.0

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHhhc
Q 041252          360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS-----GCNPVLKQRSAELLKLCSLNY  434 (450)
Q Consensus       360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s-----~~~~~~k~~A~~lL~~ls~~~  434 (450)
                      ++..+.+-|.+.++.++-.|+.+|-.+.+++......++...+.+.-|+.++..     ..++.+|++...++..-+...
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            466788888888999999999999999998876666777778888889988842     246899999999999877775


Q ss_pred             CCC
Q 041252          435 TDT  437 (450)
Q Consensus       435 ~~~  437 (450)
                      .+.
T Consensus       119 ~~~  121 (139)
T cd03567         119 PHE  121 (139)
T ss_pred             ccc
Confidence            543

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.07  E-value=84  Score=34.43  Aligned_cols=58  Identities=24%  Similarity=0.299  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh
Q 041252          162 KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES  225 (450)
Q Consensus       162 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~  225 (450)
                      +...+..-++.++..+..++.-+..     .|..+..+|.+. +..+..+|.++|..|+.++..
T Consensus       219 ~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~st-ssaV~fEaa~tlv~lS~~p~a  276 (948)
T KOG1058|consen  219 NDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSST-SSAVIFEAAGTLVTLSNDPTA  276 (948)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcC-CchhhhhhcceEEEccCCHHH
Confidence            3556777788888888766544333     377888999886 788999999999988877643

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=81.86  E-value=35  Score=36.28  Aligned_cols=121  Identities=14%  Similarity=0.146  Sum_probs=76.2

Q ss_pred             cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhhhccCCCchHHHH
Q 041252          161 VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLMQPAKVSLLV  239 (450)
Q Consensus       161 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~~g~i~~Lv  239 (450)
                      ++...+.-|..-|....+.-++..+.     ++..++.+.... +..++..|+..|-.++.+. +....+     +..|+
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~  102 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLV  102 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-S-SHHHHHHHHHHGGGG--T--T-HHHH-----HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHH
Confidence            45667777888888888776665444     478889998875 7889999999999998863 333333     67788


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh---cCCCccchhHHHHHHH
Q 041252          240 DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK---NKRHPNGILPGLSLLR  301 (450)
Q Consensus       240 ~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~---~~~~~~~~~~al~aL~  301 (450)
                      .+|.++++.....+-.+|..|...+.        .+.+..|+.-+.   .+ +..+++.++..|.
T Consensus       103 QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~-de~~Re~~lkFl~  158 (556)
T PF05918_consen  103 QLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSG-DEQVRERALKFLR  158 (556)
T ss_dssp             HHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS--HHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccC-chHHHHHHHHHHH
Confidence            88998888888888888877754332        334455555554   22 4556666666553

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=81.38  E-value=58  Score=35.54  Aligned_cols=158  Identities=15%  Similarity=0.080  Sum_probs=90.8

Q ss_pred             CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHH
Q 041252          232 PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS  311 (450)
Q Consensus       232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~  311 (450)
                      .++=+.+-+++...++-.|....-.+.. +-...      +..+++..|+..--+..+.+++++|..+|.=++..+..  
T Consensus       518 e~Ad~lI~el~~dkdpilR~~Gm~t~al-Ay~GT------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--  588 (929)
T KOG2062|consen  518 EDADPLIKELLRDKDPILRYGGMYTLAL-AYVGT------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--  588 (929)
T ss_pred             hhhHHHHHHHhcCCchhhhhhhHHHHHH-HHhcc------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh--
Confidence            3444555555555566666655444321 11111      12345666776633334677888888888877644332  


Q ss_pred             HHHhcCCHHHHHHhcCC-CChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252          312 LVVSIGAVPQLVELLPS-LDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA  390 (450)
Q Consensus       312 ~iv~~G~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  390 (450)
                            .++..|++|+. .++-++-.++.+|..-|....++.++-    .+.+|+   .....-+++-|+-++.-+....
T Consensus       589 ------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~----lLepl~---~D~~~fVRQgAlIa~amIm~Q~  655 (929)
T KOG2062|consen  589 ------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAIN----LLEPLT---SDPVDFVRQGALIALAMIMIQQ  655 (929)
T ss_pred             ------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHH----HHhhhh---cChHHHHHHHHHHHHHHHHHhc
Confidence                  23566677744 588999999999998888776666652    233333   3445677888877777654333


Q ss_pred             chhHHHHHHh-cChHHHHHHHHHcC
Q 041252          391 PEECSSAAVD-AGLAAKLFLVIQSG  414 (450)
Q Consensus       391 ~~~~~~~~~~-~G~i~~L~~ll~s~  414 (450)
                      .+..   .-+ .|....+..++...
T Consensus       656 t~~~---~pkv~~frk~l~kvI~dK  677 (929)
T KOG2062|consen  656 TEQL---CPKVNGFRKQLEKVINDK  677 (929)
T ss_pred             cccc---CchHHHHHHHHHHHhhhh
Confidence            2221   111 34555555666444

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=80.88  E-value=10  Score=32.24  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=60.1

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhhcC
Q 041252          360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCN-PVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~-~~~k~~A~~lL~~ls~~~~  435 (450)
                      ++..|-+-|.+.++.++..|+.+|-.+.+++......++...+.+..|..++..... +.+|+++..++..-+....
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~  114 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK  114 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence            455677888888999999999999999998866666677777888889888866433 4489999998888777654

Unpublished observations. Domain of unknown function.

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.76  E-value=1.1  Score=43.98  Aligned_cols=45  Identities=20%  Similarity=0.158  Sum_probs=36.3

Q ss_pred             eeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           70 FVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        70 ~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      -.|=||+.--+|-+++||-|. .|..|-+.---. +..||.||+++.
T Consensus       291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~  336 (349)
T KOG4265|consen  291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIE  336 (349)
T ss_pred             CeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchH
Confidence            469999999999999999997 688886654322 567999999864

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=80.69  E-value=5.8  Score=41.93  Aligned_cols=119  Identities=21%  Similarity=0.237  Sum_probs=66.5

Q ss_pred             CccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHH
Q 041252          289 HPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVR  366 (450)
Q Consensus       289 ~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~  366 (450)
                      +...+.-|+..+...- ..++-...     ++.++++|..+.+..++..|+..|-.+|.. ++....+.+      .|++
T Consensus        35 ~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD------vL~Q  103 (556)
T PF05918_consen   35 SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD------VLVQ  103 (556)
T ss_dssp             -HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH------HHHH
T ss_pred             CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH------HHHH
Confidence            3555556655555554 23333222     456788888888889999999999999975 566666665      8999


Q ss_pred             HHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHH---cCCCHHHHHHHHHHHH
Q 041252          367 LLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQ---SGCNPVLKQRSAELLK  428 (450)
Q Consensus       367 lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~---s~~~~~~k~~A~~lL~  428 (450)
                      +|...++.-....-.+|..+-..++.         |.+..+...+.   ++ ++.+|+++...|+
T Consensus       104 lL~tdd~~E~~~v~~sL~~ll~~d~k---------~tL~~lf~~i~~~~~~-de~~Re~~lkFl~  158 (556)
T PF05918_consen  104 LLQTDDPVELDAVKNSLMSLLKQDPK---------GTLTGLFSQIESSKSG-DEQVRERALKFLR  158 (556)
T ss_dssp             HTT---HHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH---HS--HHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHhcccC-chHHHHHHHHHHH
Confidence            99877655555555566555554431         22333333333   44 5667888766553

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	450
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		6e-14

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 42/68 (61%)
Query: 65  EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKT 124
           E P  F CPISLE M+DPV + TGQTYERS+I KW   G  TCP + + L    +TPN  
Sbjct: 4   EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63
Query: 125 LYHLIHTW 132
           L  LI  W
Sbjct: 64  LKSLIALW 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	450
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	2e-34
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	2e-31
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	4e-30
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	1e-29
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	2e-24
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	2e-21
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-20
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-15
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-20
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-19
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-15
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-15
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-14
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-19
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-15
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-13
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-12
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-06
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-16
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-13
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-08
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-16
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-09
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-09
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	7e-16
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-05
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-04
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-14
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-14
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-14
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-14
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-13
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	1e-13
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-12
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-11
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-07
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-12
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-08
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-06
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	5e-12
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-10
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-09
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	2e-08
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-07
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	6e-04
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	3e-06
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-06
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-05
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-05
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-05
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-05
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	4e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	7e-05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	8e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	2e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	7e-04
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	9e-04
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	9e-04

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  121 bits (307), Expect = 2e-34
 Identities = 36/69 (52%), Positives = 42/69 (60%)

Query: 64  AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNK 123
            E P  F CPISLE M+DPV + TGQTYERS+I KW   G  TCP + + L    +TPN 
Sbjct: 3   PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62

Query: 124 TLYHLIHTW 132
            L  LI  W
Sbjct: 63  VLKSLIALW 71

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  117 bits (295), Expect = 2e-31
 Identities = 20/79 (25%), Positives = 34/79 (43%)

Query: 54  LKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQE 113
             ++  +    EIP      IS E M++P    +G TY+R +I +      +  P T   
Sbjct: 91  FSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSP 150

Query: 114 LWDDSVTPNKTLYHLIHTW 132
           L  D + PN  +  +I  +
Sbjct: 151 LTQDQLIPNLAMKEVIDAF 169

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  110 bits (278), Expect = 4e-30
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 59  AELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDS 118
           AE+D ++ P  F  P+    M DPV L +G   +RS IL+   L   T P   Q L +  
Sbjct: 4   AEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESM 62

Query: 119 VTPNKTLYHLIHTWFSQK 136
           + P   L   I  W  +K
Sbjct: 63  LEPVPELKEQIQAWMREK 80

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  110 bits (276), Expect = 1e-29
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 50  ERLDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPT 109
           E +  K   AE+D ++ P  F  P+    M DPV L +G   +RS IL+   L   T P 
Sbjct: 10  EEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPF 68

Query: 110 TMQELWDDSVTPNKTLYHLIHTWFSQK 136
             Q L +  + P   L   I  W  +K
Sbjct: 69  NRQTLTESMLEPVPELKEQIQAWMREK 95

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score = 95.6 bits (238), Expect = 2e-24
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 59  AELDLAEIPSVFVCPISLEPMQDPVTLCTGQ-TYERSNILKWFSLGRYTCPTTMQELWDD 117
            E   A+    F+ PI    M DPV L + + T +RS I +     + T P     L  D
Sbjct: 12  EEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMD 70

Query: 118 SVTPNKTLYHLIHTWFSQK 136
            + PN  L   I  W +++
Sbjct: 71  QIRPNTELKEKIQRWLAER 89

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 96.8 bits (240), Expect = 2e-21
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 2/98 (2%)

Query: 50  ERLDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCP 108
           E         +L+  ++P  F+ P+    M+DPV L  +    +RS I     L   T P
Sbjct: 872 EEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDP 930

Query: 109 TTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSED 146
                L  + VTPN+ L   I  +  QK    K ++ +
Sbjct: 931 FNRMPLKLEDVTPNEELRQKILCFKKQKKEEAKHKASE 968

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 91.4 bits (227), Expect = 5e-20
 Identities = 42/258 (16%), Positives = 87/258 (33%), Gaps = 7/258 (2%)

Query: 168 QALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT 227
                LH ++  H      +   GG+  +  +LG     +V   A+  L NL L  E   
Sbjct: 79  CTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 228 NLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
             ++ A  +  +V +LN+ +V+     T  ++ L         I+ +      L+ +++ 
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 287 KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346
             +   +     +L+ + + +  +  +V  G +  L   L       +Q  L  L  LS 
Sbjct: 197 YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256

Query: 347 LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAK 406
               +  +      +   V+LL     +    A  IL ++      +        G    
Sbjct: 257 AATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKNKMMVCQVGGIEA 312

Query: 407 LFLVIQSGCNPVLKQRSA 424
           L   +    +       A
Sbjct: 313 LVRTVLRAGDREDITEPA 330

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 75.6 bits (186), Expect = 8e-15
 Identities = 37/200 (18%), Positives = 79/200 (39%), Gaps = 3/200 (1%)

Query: 235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGIL 294
           +  L  +LN+           ++ +L +++  R  I+ S +++  ++R ++N        
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78

Query: 295 PGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEG-KLA 353
                L ++    E    +   G +P LV++L S     L  A+  L  L    EG K+A
Sbjct: 79  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138

Query: 354 LKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS 413
           ++  A  +   V LL + +          L  +      E     + +G    L  ++++
Sbjct: 139 VRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ-ESKLIILASGGPQALVNIMRT 196

Query: 414 GCNPVLKQRSAELLKLCSLN 433
                L   ++ +LK+ S+ 
Sbjct: 197 YTYEKLLWTTSRVLKVLSVC 216

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 67.1 bits (164), Expect = 4e-12
 Identities = 39/228 (17%), Positives = 80/228 (35%), Gaps = 23/228 (10%)

Query: 159 KKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVN 218
           + +   A + AL+ L         A+  +    G+ ++  LL P +   +    VG++ N
Sbjct: 324 EDITEPA-ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382

Query: 219 LTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLI 278
           L L   +   L +   +  LV +L     +T+   +    +    +  R E +       
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG---- 438

Query: 279 GLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLAL 338
                                L  +      R ++  +  +P  V+LL S   +  ++A 
Sbjct: 439 -----------------CTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 481

Query: 339 CILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI 386
            +L  L+   E   A++           LL   +E    YA ++L+ +
Sbjct: 482 GVLCELAQDKEAAEAIEA-EGATAPLTELLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 38/223 (17%), Positives = 75/223 (33%), Gaps = 8/223 (3%)

Query: 176 IAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKV 235
           + +  +S +  +V+ GG+  +   L    S  +    +  L NL+  +  +  +     +
Sbjct: 212 VLSVCSSNKPAIVEAGGMQALGLHLT-DPSQRLVQNCLWTLRNLSDAATKQEGMEGL--L 268

Query: 236 SLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGIL- 294
             LV +L    +        ++  L         +V     +  L+R V        I  
Sbjct: 269 GTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328

Query: 295 PGLSLLRSICLLNE----VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEG 350
           P +  LR +   ++     ++ V     +P +V+LL       L  A   L    +L   
Sbjct: 329 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388

Query: 351 KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEE 393
             A       IP  V+LL+R  +D  +           +    
Sbjct: 389 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 91.2 bits (226), Expect = 8e-20
 Identities = 48/284 (16%), Positives = 96/284 (33%), Gaps = 8/284 (2%)

Query: 164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS 223
               +A   +HQ++   AS    M     V+ I   +             G L NL+   
Sbjct: 165 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR 224

Query: 224 ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRL 283
           E    + +   +  LV+ML         +    +  L+  ++     V     L  ++ L
Sbjct: 225 EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284

Query: 284 VKNKRHPNGILPGLSLLRSICLLN-EVRSLVVSIGAVPQLVELLPSLDPDCLQ-LALCIL 341
           +    +   +      L+ +   N E + ++++ G    LV ++ +   + L      +L
Sbjct: 285 LNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 343

Query: 342 DALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDA 401
             LS     K A+ + A  +      L   S+   Q  L  L ++     +  +      
Sbjct: 344 KVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLS----DAATKQEGME 398

Query: 402 GLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISKCKL 445
           GL   L  ++ S    V+   +  L  L   NY +   + +   
Sbjct: 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 442

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 90.1 bits (223), Expect = 2e-19
 Identities = 45/275 (16%), Positives = 102/275 (37%), Gaps = 6/275 (2%)

Query: 164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS 223
           +        LH ++  H      +   GG+  + ++LG     +V   A+  L NL L  
Sbjct: 208 ETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLG-SPVDSVLFHAITTLHNLLLHQ 265

Query: 224 ESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMR 282
           E     ++ A  +  +V +LN+ +V+     T  ++ L         I+ +      L+ 
Sbjct: 266 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 325

Query: 283 LVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILD 342
           +++   +   +     +L+ + + +  +  +V  G +  L   L       +Q  L  L 
Sbjct: 326 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 385

Query: 343 ALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAG 402
            LS     +  ++     +   V+LL     +    A  IL ++     +         G
Sbjct: 386 NLSDAATKQEGMEGL---LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 442

Query: 403 LAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT 437
           + A +  V+++G    + + +   L+  +  + D 
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDA 477

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 78.5 bits (193), Expect = 1e-15
 Identities = 44/286 (15%), Positives = 101/286 (35%), Gaps = 11/286 (3%)

Query: 154 LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAV 213
           ++  L K   +        L  +A  +  ++  ++  GG   + +++  +T   +     
Sbjct: 281 MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 340

Query: 214 GVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSS 273
            VL  L++ S +K  +++   +  L   L + S     NC   +  L +    +  +   
Sbjct: 341 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL 400

Query: 274 HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN-EVRSLVVSIGAVPQLVELL--PSLD 330
              L+ L+         N +     +L ++   N + + +V  +G +  LV  +      
Sbjct: 401 LGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 456

Query: 331 PDCLQLALCILDALSSLPEGKLALKDC---ANTIPNTVRLLMRVSEDCTQYALSILWSIC 387
            D  + A+C L  L+S  +     ++       +P  V+LL   S      A   L    
Sbjct: 457 EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516

Query: 388 KIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433
            + P    +   + G   +L  ++        ++ S    +   + 
Sbjct: 517 ALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 561

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 77.8 bits (191), Expect = 2e-15
 Identities = 35/199 (17%), Positives = 74/199 (37%), Gaps = 1/199 (0%)

Query: 235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGIL 294
           +  L  +LN+           ++ +L +++  R  I+ S +++  ++R ++N        
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211

Query: 295 PGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLAL 354
                L ++    E    +   G +P LV +L S     L  A+  L  L    EG    
Sbjct: 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271

Query: 355 KDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG 414
              A  +   V LL + +          L  +     +E     + +G    L  ++++ 
Sbjct: 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTY 330

Query: 415 CNPVLKQRSAELLKLCSLN 433
               L   ++ +LK+ S+ 
Sbjct: 331 TYEKLLWTTSRVLKVLSVC 349

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 75.1 bits (184), Expect = 1e-14
 Identities = 43/250 (17%), Positives = 90/250 (36%), Gaps = 24/250 (9%)

Query: 159 KKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVN 218
           + +   A + AL+ L         A+  +    G+ ++  LL P +   +    VG++ N
Sbjct: 457 EDITEPA-ICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 515

Query: 219 LTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLI 278
           L L   +   L +   +  LV +L     +T+   +    +    +  R E +       
Sbjct: 516 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI------- 568

Query: 279 GLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLAL 338
                         +      L  +      R ++  +  +P  V+LL S   +  ++A 
Sbjct: 569 --------------VEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 614

Query: 339 CILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAA 398
            +L  L+   E   A++           LL   +E    YA ++L+ + +  P++     
Sbjct: 615 GVLCELAQDKEAAEAIEA-EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD-YKKR 672

Query: 399 VDAGLAAKLF 408
           +   L + LF
Sbjct: 673 LSVELTSSLF 682

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 50.8 bits (121), Expect = 7e-07
 Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 5/136 (3%)

Query: 299 LLRSIC--LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKD 356
           +L+     L+N      ++  A+P+L +LL   D   +  A  ++  LS     + A+  
Sbjct: 130 MLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR 189

Query: 357 CANTIPNTVRLLMRVSE-DCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGC 415
               +   VR +   ++ +  +     L ++      E   A   +G    L  ++ S  
Sbjct: 190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV 247

Query: 416 NPVLKQRSAELLKLCS 431
           + VL      L  L  
Sbjct: 248 DSVLFHAITTLHNLLL 263

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 47.3 bits (112), Expect = 8e-06
 Identities = 28/195 (14%), Positives = 53/195 (27%), Gaps = 26/195 (13%)

Query: 154 LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAV 213
           ++  L        ++A   L +  A   +    + ++G +  +  LL             
Sbjct: 493 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR-AHQDTQRRTS 551

Query: 214 GVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSS 273
                       +   +  A                   CT  +  L  +   R  I   
Sbjct: 552 MGGTQQQFVEGVRMEEIVEA-------------------CTGALHILARDIHNRIVIRGL 592

Query: 274 H--RLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDP 331
           +   L + L+         N       +L  +    E    + + GA   L ELL S + 
Sbjct: 593 NTIPLFVQLLY----SPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNE 648

Query: 332 DCLQLALCILDALSS 346
                A  +L  +S 
Sbjct: 649 GVATYAAAVLFRMSE 663

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 43.9 bits (103), Expect = 8e-05
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 4/147 (2%)

Query: 139 LMKKRSEDVQGRASELLGTLKKVKG---QARVQALKELHQIAAAHASARKTMVDEGGVAL 195
           L+ +  +D Q R S      + V+G   +  V+A      I A     R  +     + L
Sbjct: 538 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPL 597

Query: 196 ISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTR 255
              LL     +     A GVL  L  D E+   +      + L ++L+  +         
Sbjct: 598 FVQLLYSPIENIQ-RVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 656

Query: 256 LIEKLMEEKDFRPEIVSSHRLLIGLMR 282
           ++ ++ E+K    +   S  L   L R
Sbjct: 657 VLFRMSEDKPQDYKKRLSVELTSSLFR 683

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 90.0 bits (223), Expect = 2e-19
 Identities = 44/267 (16%), Positives = 97/267 (36%), Gaps = 6/267 (2%)

Query: 168 QALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT 227
                LH ++  H      +   GG+  +  +LG     +V   A+  L NL L  E   
Sbjct: 76  CTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 228 NLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
             ++ A  +  +V +LN+ +V+     T  ++ L         I+ +      L+ +++ 
Sbjct: 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 193

Query: 287 KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346
             +   +     +L+ + + +  +  +V  G +  L   L       +Q  L  L  LS 
Sbjct: 194 YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253

Query: 347 LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAK 406
               +  +      +   V+LL     +    A  IL ++     +         G+ A 
Sbjct: 254 AATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310

Query: 407 LFLVIQSGCNPVLKQRSAELLKLCSLN 433
           +  V+++G    + + +   L+  +  
Sbjct: 311 VRTVLRAGDREDITEPAICALRHLTSR 337

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 76.1 bits (187), Expect = 6e-15
 Identities = 37/200 (18%), Positives = 80/200 (40%), Gaps = 3/200 (1%)

Query: 235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGIL 294
           +  L  +LN+           ++ +L +++  R  I+ S +++  ++R ++N        
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75

Query: 295 PGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEG-KLA 353
                L ++    E    +   G +P LV++L S     L  A+  L  L    EG K+A
Sbjct: 76  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135

Query: 354 LKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS 413
           ++  A  +   V LL + +          L  +     +E     + +G    L  ++++
Sbjct: 136 VRL-AGGLQKMVALLNKTNVKFLAITTDCLQILA-YGNQESKLIILASGGPQALVNIMRT 193

Query: 414 GCNPVLKQRSAELLKLCSLN 433
                L   ++ +LK+ S+ 
Sbjct: 194 YTYEKLLWTTSRVLKVLSVC 213

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 43/266 (16%), Positives = 88/266 (33%), Gaps = 27/266 (10%)

Query: 154 LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGV-ALISSLLGPFTSHAVGSEA 212
           L+  L          A   L  +   +   +  +   GG+ AL+ ++L       +   A
Sbjct: 268 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327

Query: 213 VGVLVNLTLDSESKTNLMQPAK----VSLLVDMLNEGSVETKIN-CTRLIEKLMEEKDFR 267
           +  L +LT   +         +    + ++V +L+  S    I     LI  L       
Sbjct: 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 387

Query: 268 PEIVSSH--RLLIGLMR------------------LVKNKRHPNGILPGLSLLRSICLLN 307
             +        L+ L+                    V+  R    +      L  +    
Sbjct: 388 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 447

Query: 308 EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRL 367
             R ++  +  +P  V+LL S   +  ++A  +L  L+   E   A++           L
Sbjct: 448 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAE-GATAPLTEL 506

Query: 368 LMRVSEDCTQYALSILWSICKIAPEE 393
           L   +E    YA ++L+ + +  P++
Sbjct: 507 LHSRNEGVATYAAAVLFRMSEDKPQD 532

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 41/237 (17%), Positives = 81/237 (34%), Gaps = 12/237 (5%)

Query: 175 QIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAK 234
           ++ +  +S +  +V+ GG+  +   L    S  +    +  L NL   S++ T       
Sbjct: 208 KVLSVCSSNKPAIVEAGGMQALGLHLT-DPSQRLVQNCLWTLRNL---SDAATKQEGMEG 263

Query: 235 -VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGI 293
            +  LV +L    +        ++  L         +V     +  L+R V        I
Sbjct: 264 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 323

Query: 294 L-PGLSLLRSICLLNE----VRSLVVSIGAVPQLVELLPSLDPDCLQLALC-ILDALSSL 347
             P +  LR +   ++     ++ V     +P +V+LL       L  A   ++  L+  
Sbjct: 324 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383

Query: 348 PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLA 404
           P     L++    IP  V+LL+R  +D  +           +              A
Sbjct: 384 PANHAPLRE-QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 439

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 305 LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNT 364
           L+N      ++  A+P+L +LL   D   +  A  ++  LS     + A+      +   
Sbjct: 2   LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 61

Query: 365 VRLLMRVSE-DCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRS 423
           VR +   ++ +  +     L ++      E   A   +G    L  ++ S     +   +
Sbjct: 62  VRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSP-VDSVLFYA 118

Query: 424 AE-LLKLCS 431
              L  L  
Sbjct: 119 ITTLHNLLL 127

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 80.1 bits (197), Expect = 2e-16
 Identities = 43/280 (15%), Positives = 98/280 (35%), Gaps = 14/280 (5%)

Query: 164 QARVQALKELHQIAAAHAS-ARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD 222
           ++++QA +   ++ +         ++  G +    S LG      +  E+   L N+   
Sbjct: 72  ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 131

Query: 223 SESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLM 281
           +  +T  +     +   + +L              +  +  +     ++V  H  +  L+
Sbjct: 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 191

Query: 282 RLVKNKRHPNGILPGLSLLRSICLL--------NEVRSLVVSIGAVPQLVELLPSLDPDC 333
            L+     P+        LR++           N    L      +P LV LL   DP+ 
Sbjct: 192 ALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 248

Query: 334 LQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEE 393
           L  +   +  L+  P  ++ +      +P  V+LL          AL  + +I     +E
Sbjct: 249 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT-GTDE 307

Query: 394 CSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433
            +   +DAG  A    ++ +    + K+ +  +  + +  
Sbjct: 308 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 347

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 71.2 bits (174), Expect = 2e-13
 Identities = 43/273 (15%), Positives = 95/273 (34%), Gaps = 7/273 (2%)

Query: 154 LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGG----VALISSLLGPFTSHAVG 209
            +  L         QA+  L  IA   ++ R  ++  G     +AL++       +    
Sbjct: 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207

Query: 210 SEAVGVLVNLTLDSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRP 268
                 L NL  +      L    + +  LV +L+    E   +    I  L +  + R 
Sbjct: 208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI 267

Query: 269 EIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN-EVRSLVVSIGAVPQLVELLP 327
           E+V    ++  L++L+        + P L  + +I     E    V+  GA+     LL 
Sbjct: 268 EMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326

Query: 328 SLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSIC 387
           +   +  + A   +  +++  + ++        +P  V +L +      + A   + +  
Sbjct: 327 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386

Query: 388 KIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLK 420
                E     V  G+   L  ++ +    +++
Sbjct: 387 SGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 54.3 bits (130), Expect = 5e-08
 Identities = 36/263 (13%), Positives = 94/263 (35%), Gaps = 13/263 (4%)

Query: 141 KKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLL 200
               + V+     L+  L     +    +   +  +        + +V +G V  +  LL
Sbjct: 224 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283

Query: 201 GPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEK 259
           G  T   + + A+  + N+   ++ +T  +  A  +++   +L       +   T  +  
Sbjct: 284 GA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 342

Query: 260 LMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL--NEVRSLVVSIG 317
           +   +  + + V +H L+  L+ ++               + +       E    +V  G
Sbjct: 343 ITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 401

Query: 318 AVPQLVELLPSLDPDCLQLALCIL-------DALSSLPEGKLALKDCANTIPNTVRLLMR 370
            +  L+ LL + D   +Q+ L  +       + L    +  + +++C   +     L   
Sbjct: 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC-GGLDKIEALQRH 460

Query: 371 VSEDCTQYALSILWSICKIAPEE 393
            +E   + +L+++     +  EE
Sbjct: 461 ENESVYKASLNLIEKYFSVEEEE 483

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 78.7 bits (194), Expect = 3e-16
 Identities = 57/317 (17%), Positives = 107/317 (33%), Gaps = 29/317 (9%)

Query: 141 KKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLL 200
            +  E  +    +    +          A+  L +++      R  M + GG+  I+ LL
Sbjct: 24  WEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELL 82

Query: 201 ----------GPFTSHAVGSEAVGVLVNLTL-DSESKTNLMQPA-KVSLLVDMLNEGSVE 248
                         S  +   A   L NLT  D  +K  L      +  LV  L   S +
Sbjct: 83  QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 142

Query: 249 TKINCTRLIEKL--MEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL 306
            +     ++  L    + + +  +      +  LM      +  + +   LS L ++   
Sbjct: 143 LQQVIASVLRNLSWRADVNSKKTLREVGS-VKALMECALEVKKESTLKSVLSALWNLSAH 201

Query: 307 NE--VRSLVVSIGAVPQLVELLPSLDPDC----LQLALCILDALSSL----PEGKLALKD 356
                  +    GA+  LV  L           ++    IL  +SSL     + +  L++
Sbjct: 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 261

Query: 357 CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCN 416
             N +   ++ L   S      A   LW++    P++   A  D G  + L  +I S  +
Sbjct: 262 N-NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ-EALWDMGAVSMLKNLIHSK-H 318

Query: 417 PVLKQRSAELLKLCSLN 433
            ++   SA  L+    N
Sbjct: 319 KMIAMGSAAALRNLMAN 335

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 44/253 (17%), Positives = 89/253 (35%), Gaps = 15/253 (5%)

Query: 166 RVQALKELHQIAAAHASARKTMV-DEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL--D 222
           R  A   L  +     + + T+   +G +  + + L    S  +      VL NL+   D
Sbjct: 101 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRAD 159

Query: 223 SESKTNLMQPAKVSLLVDMLNEGS-VETKINCTRLIEKL-MEEKDFRPEIVSSH---RLL 277
             SK  L +   V  L++   E     T  +    +  L     + + +I +       L
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 219

Query: 278 IGLMRLVKNKRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELLPSLDPDC 333
           +G +           I  G  +LR++  L     + R ++     +  L++ L S     
Sbjct: 220 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 279

Query: 334 LQLALCILDALS-SLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPE 392
           +  A   L  LS   P+ + AL D    +     L+    +     + + L ++    P 
Sbjct: 280 VSNACGTLWNLSARNPKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338

Query: 393 ECSSAAVDAGLAA 405
           +   A + +  ++
Sbjct: 339 KYKDANIMSPGSS 351

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 17/194 (8%)

Query: 255 RLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNG--ILPGLSLLRSICLLNEVRSL 312
            L+E++    +   E   +H    G+ +       P    I P + +L  +    E R  
Sbjct: 11  HLLEQIRAYCETCWEWQEAH--EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA 68

Query: 313 VVSIGAVPQLVELLPS--------LDPDCLQLALCILDALSSL----PEGKLALKDCANT 360
           +  +G +  + ELL           D   + L      AL++L       K  L      
Sbjct: 69  MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128

Query: 361 IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAG-LAAKLFLVIQSGCNPVL 419
           +   V  L   SED  Q   S+L ++   A         + G + A +   ++      L
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 420 KQRSAELLKLCSLN 433
           K   + L  L +  
Sbjct: 189 KSVLSALWNLSAHC 202

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 78.5 bits (193), Expect = 7e-16
 Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 5/284 (1%)

Query: 141 KKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASAR-KTMVDEGGVALISSL 199
           ++    +Q    ++   L     Q ++ A  +  QI +         ++  G V  +   
Sbjct: 79  QQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF 138

Query: 200 LGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIE 258
           +       +  EA   L N+   + ++T ++  A  V L + +L  GSVE K      + 
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALG 198

Query: 259 KLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LNEVRSLVVSIG 317
            +  +     + V     +  ++ L  +   P+ I      L ++C          V   
Sbjct: 199 NVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQ 257

Query: 318 AVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQ 377
           A+P L +L+ S+D + L  A   +  LS  P+  +            V LL   S     
Sbjct: 258 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 317

Query: 378 YALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQ 421
            AL  + +I     +  +   ++AG+   L L++ S    + K+
Sbjct: 318 PALRAVGNIVT-GNDLQTQVVINAGVLPALRLLLSSPKENIKKE 360

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 45/279 (16%), Positives = 104/279 (37%), Gaps = 7/279 (2%)

Query: 154 LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAV 213
            +  L     + + QA+  L  +A      R  ++    +  I  L       ++   A 
Sbjct: 178 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIRTAT 236

Query: 214 GVLVNLTLDSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVS 272
             L NL    + + +    ++ +  L  ++     ET ++    I  L +      + V 
Sbjct: 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296

Query: 273 SHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS-LVVSIGAVPQLVELLPSLDP 331
             R+   L+ L+ ++       P L  + +I   N++++ +V++ G +P L  LL S   
Sbjct: 297 DVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE 355

Query: 332 DCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP 391
           +  + A   +  +++    ++     AN IP  V+LL        + A   + +      
Sbjct: 356 NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL 415

Query: 392 --EECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK 428
              +     V  G    L  +++   +  + + + + L+
Sbjct: 416 QRPDIIRYLVSQGCIKPLCDLLEIA-DNRIIEVTLDALE 453

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 34/205 (16%), Positives = 70/205 (34%), Gaps = 18/205 (8%)

Query: 154 LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAV 213
           L+  L       +  AL+ +  I   +    + +++ G +  +  LL       +  EA 
Sbjct: 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS-PKENIKKEAC 362

Query: 214 GVLVNLTLDS-ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVS 272
             + N+T  + E    ++    +  LV +L     +TK      I         RP+I+ 
Sbjct: 363 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 422

Query: 273 ---SHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL------------LNEVRSLVVSIG 317
              S   +  L  L++       I   L  L +I              +NE    +   G
Sbjct: 423 YLVSQGCIKPLCDLLEIA-DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481

Query: 318 AVPQLVELLPSLDPDCLQLALCILD 342
            + ++     + +    + A  I++
Sbjct: 482 GMEKIFNCQQNENDKIYEKAYKIIE 506

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 26/158 (16%), Positives = 44/158 (27%), Gaps = 13/158 (8%)

Query: 285 KNKR----------HPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCL 334
           K KR           P              +  + +        +PQ+ + L S D    
Sbjct: 45  KAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQ 104

Query: 335 QLAL-CILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQY-ALSILWSICKIAPE 392
             A       LS      + +   A  +P  V  +     +  Q  A   L +I      
Sbjct: 105 LSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS-GTS 163

Query: 393 ECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLC 430
             +   VDA        ++ +G   V +Q    L  + 
Sbjct: 164 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 201

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 73.4 bits (180), Expect = 1e-14
 Identities = 19/81 (23%), Positives = 36/81 (44%)

Query: 55  KKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL 114
            ++  +    +IP      IS E M++P    +G TY+R +I +      +  P T   L
Sbjct: 194 SQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253

Query: 115 WDDSVTPNKTLYHLIHTWFSQ 135
             + + PN  +  +I  + S+
Sbjct: 254 TQEQLIPNLAMKEVIDAFISE 274

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 44/227 (19%), Positives = 89/227 (39%), Gaps = 4/227 (1%)

Query: 164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS 223
           Q ++ A ++  QI +      + ++D G +  +  LL    +  +  EA+  L N+    
Sbjct: 27  QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGG 85

Query: 224 ESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMR 282
             +   +  A  +  LV +L+  + +        +  +    + + + V     L  L++
Sbjct: 86  NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145

Query: 283 LVKNKRHPNGILPGLSLLRSICLLN-EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCIL 341
           L+ +  +   +   L  L +I     E    V+  GA+P LV+LL S +   LQ AL  L
Sbjct: 146 LLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 204

Query: 342 DALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK 388
             ++S    +      A  +    +L    +E   + A   L  +  
Sbjct: 205 SNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 44/190 (23%)

Query: 158 LKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLV 217
           L     Q   +AL  L  IA+      + ++D G +  +  LL       +  EA+  L 
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL-QEALWALS 163

Query: 218 NLTLDSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRL 276
           N+      +   +  A  +  LV +L+  + +        +            I S    
Sbjct: 164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS----------NIASGG-- 211

Query: 277 LIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQL 336
                                         NE +  V   GA+ +L +L    +    + 
Sbjct: 212 ------------------------------NEQKQAVKEAGALEKLEQLQSHENEKIQKE 241

Query: 337 ALCILDALSS 346
           A   L+ L S
Sbjct: 242 AQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 310 RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLL 368
                    +PQ+ + L S D      A      + S   E   A+ D A  +P  V+LL
Sbjct: 5   HHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLL 63

Query: 369 MRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQ 421
              +E   Q AL  L +I      E   A +DAG    L  ++ S    +L++
Sbjct: 64  SSPNEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 115

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 73.4 bits (180), Expect = 3e-14
 Identities = 43/274 (15%), Positives = 95/274 (34%), Gaps = 5/274 (1%)

Query: 164 QARVQALKELHQIAAAHASA--RKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL 221
           + ++ A ++  ++ +   +    + +   G VA     L    +  +  E+  VL N+  
Sbjct: 35  EQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIAS 94

Query: 222 DSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGL 280
            +  +T ++  A  V + +++L+    + +      +  +  +     + V    +L  L
Sbjct: 95  GNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPL 154

Query: 281 MRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSI-GAVPQLVELLPSLDPDCLQLALC 339
           ++L   +         +  L ++C           +   +  L  LL   D D L  A  
Sbjct: 155 LQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW 214

Query: 340 ILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAV 399
            L  LS  P  K+     A      V LLM         AL  + +I        +   +
Sbjct: 215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD-IQTQVIL 273

Query: 400 DAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433
           +      L  ++ S    + K+    +  + + N
Sbjct: 274 NCSALQSLLHLLSSPKESIKKEACWTISNITAGN 307

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 73.4 bits (180), Expect = 3e-14
 Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 4/277 (1%)

Query: 154 LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAV 213
            +  L       + QA+  L  IA      R  ++D   +  +  L        +   AV
Sbjct: 112 FIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171

Query: 214 GVLVNLTLDSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVS 272
             L NL           + +  +++L  +L     +   +    +  L +  + + + V 
Sbjct: 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI 231

Query: 273 SHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN-EVRSLVVSIGAVPQLVELLPSLDP 331
              +   L+ L+ +      + P L  + +I   +     ++++  A+  L+ LL S   
Sbjct: 232 DAGVCRRLVELLMHN-DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKE 290

Query: 332 DCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP 391
              + A   +  +++    ++     AN  P  + +L        + A   + +      
Sbjct: 291 SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS 350

Query: 392 EECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK 428
            E     V+ G    L  ++    +  + Q +   L+
Sbjct: 351 AEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLE 386

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 69.9 bits (171), Expect = 3e-13
 Identities = 38/257 (14%), Positives = 87/257 (33%), Gaps = 7/257 (2%)

Query: 162 KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL 221
           +      A+  L  +    +   +       + ++S LL    +  V ++A   L  L+ 
Sbjct: 163 RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD-VLADACWALSYLSD 221

Query: 222 DSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGL 280
               K   +  A     LV++L     +      R +  ++   D + +++ +   L  L
Sbjct: 222 GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281

Query: 281 MRLVKNKRHPNGILPGLSLLRSICLLNEV-RSLVVSIGAVPQLVELLPSLDPDCLQLALC 339
           + L+ +    +        + +I   N      V+     P L+ +L + +    + A  
Sbjct: 282 LHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340

Query: 340 ILDALSSLPEGKLALKDC-ANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAA 398
            +   +S    +          I     LL  +     Q AL+ L +I ++   E  +  
Sbjct: 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG--EQEAKR 398

Query: 399 VDAGLAAKLFLVIQSGC 415
              G+     L+ ++  
Sbjct: 399 NGTGINPYCALIEEAYG 415

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 39/218 (17%), Positives = 83/218 (38%), Gaps = 9/218 (4%)

Query: 221 LDSESKTNLMQPA--KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRP--EIVSSHRL 276
            +++     M P     S +++M+   S E +++ T+   KL+ ++   P  E++S+  +
Sbjct: 6   HEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGV 65

Query: 277 LIGLMRLVKNKRHPNGILPGLSLLRSICLLN-EVRSLVVSIGAVPQLVELLPSLDPDCLQ 335
           +   +  +K K +         +L +I   N     +V+  GAVP  +ELL S   D  +
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125

Query: 336 LALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA--PEE 393
            A+  L  ++             N +P  ++L     ++      + +W++  +      
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS--KQNRLTMTRNAVWALSNLCRGKSP 183

Query: 394 CSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS 431
               A  +     L  ++      VL      L  L  
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSD 221

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 1e-13
 Identities = 67/418 (16%), Positives = 125/418 (29%), Gaps = 104/418 (24%)

Query: 54  LKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQE 113
               +   D  ++  +    +S E +     + +      +  L W  L +      +Q+
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAVSGTLRLFWTLLSKQE--EMVQK 81

Query: 114 LWDDSVTPN-KTLYHLIHTWFSQKYLLMKKRSE--DVQGRASELLGTLKKVKGQ-ARVQA 169
             ++ +  N K L   I T   Q  ++ +   E  D     +++       K   +R+Q 
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-----AKYNVSRLQP 136

Query: 170 LKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAV-GSEAVG--VLVNLTLDSESK 226
             +L Q       A   +     V +            V GS   G   +      S   
Sbjct: 137 YLKLRQ-------ALLELRPAKNVLI----------DGVLGS---GKTWVALDVCLSYKV 176

Query: 227 TNLMQPAKVSLLVDMLNEGSVETKIN-----CTRLIEKLMEEKDFRPEI-VSSHRLLIGL 280
              M   K+  L ++ N  S ET +        ++        D    I +  H +   L
Sbjct: 177 QCKM-DFKIFWL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 281 MRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLAL-- 338
            RL+K+K + N       LL    +L  V++         +      + +  C  L    
Sbjct: 235 RRLLKSKPYEN------CLL----VLLNVQN--------AKAWN---AFNLSCKILLTTR 273

Query: 339 --CILDALSSLPEGKLALKDCAN--TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEEC 394
              + D LS+     ++L   +   T      LL++   DC    L     +    P   
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPR--EVLTTNP--- 327

Query: 395 SSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK--LCSLNYTDTTFISKCKLTRTIQ 450
                       +                AE ++  L + +          KLT  I+
Sbjct: 328 --------RRLSII---------------AESIRDGLATWDNWKHVNCD--KLTTIIE 360

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 49/331 (14%), Positives = 104/331 (31%), Gaps = 78/331 (23%)

Query: 5   QPSKRDVLVGFEGSGDGQILDLDTAVKDGVL----GG----TVGAGVTGAGVGERL-DLK 55
           +P+K  ++ G  GSG    + LD  +   V            +    +   V E L  L 
Sbjct: 148 RPAKNVLIDGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 56  KMIAELDLAEIPSVFVCPISLEPMQDPV-TLCTGQTYERS----------NILKWFSLGR 104
             I     +         + +  +Q  +  L   + YE                 F+L  
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS- 265

Query: 105 YTCP---TTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKV 161
             C    TT  +   D ++   T            ++ +   S  +     E+   L K 
Sbjct: 266 --CKILLTTRFKQVTDFLSAATT-----------THISLDHHSMTLT--PDEVKSLLLKY 310

Query: 162 KGQARVQAL-KELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHA-----VGSEAVGV 215
               R Q L +E+                   +++I+  +    +       V  + +  
Sbjct: 311 LDC-RPQDLPREVLTTNPRR------------LSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 216 LVNLTLD----SESKTNLMQ----------PAKV-SLLVDMLNEGSVETKINCTRLIEKL 260
           ++  +L+    +E +    +          P  + SL+   + +  V   +N  +L +  
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN--KLHKYS 415

Query: 261 MEEKDFRPEIVSSHRLLIGLMRLVKNKR--H 289
           + EK  +   +S   + + L   ++N+   H
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALH 446

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 65.4 bits (159), Expect = 1e-13
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 70  FVCPISLEPMQDPVTL-CTGQTYERSNILKWF-----SLGRYTCPTT---MQELWDDSVT 120
           F CPI+ E M+ PV     G TYE   I++          +  CP       ++    + 
Sbjct: 8   FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67

Query: 121 PNKTLYHLIHTWFSQK 136
            ++ L   I     ++
Sbjct: 68  QDEALRRAIENHNKKR 83

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 48/281 (17%), Positives = 98/281 (34%), Gaps = 21/281 (7%)

Query: 166 RVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES 225
           +    + L  +++    +  +M   G + L+  LL     H    ++V +L N     E+
Sbjct: 46  KDDMSRTLLAMSS-SQDSCISMRQSGCLPLLIQLL-----HGNDKDSV-LLGNSRGSKEA 98

Query: 226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK 285
           +      A  +++    ++     +I    L+E++    +   E   +H   +   +   
Sbjct: 99  RARASA-ALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPM 157

Query: 286 NKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL--------PSLDPDCLQLA 337
                + I P + +L  +    E R  +  +G +  + ELL         + D   + L 
Sbjct: 158 PAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLR 217

Query: 338 LCILDALSSL----PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEE 393
                AL++L       K  L      +   V  L   SED  Q   S+L ++   A   
Sbjct: 218 RYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN 277

Query: 394 CSSAAVDAG-LAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433
                 + G + A +   ++      LK   + L  L +  
Sbjct: 278 SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 63.4 bits (154), Expect = 5e-11
 Identities = 44/236 (18%), Positives = 82/236 (34%), Gaps = 17/236 (7%)

Query: 166 RVQALKELHQIAAAHASARKTMVDEGGV--ALISSLLGPFTSHAVGSEAVGVLVNLTL-- 221
           R  A   L  +     + + T+    G   AL++ L     S  +      VL NL+   
Sbjct: 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE--SEDLQQVIASVLRNLSWRA 274

Query: 222 DSESKTNLMQPAKVSLLVDMLNEGS-VETKINCTRLIEKL-MEEKDFRPEIVSSH---RL 276
           D  SK  L +   V  L++   E     T  +    +  L     + + +I +       
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334

Query: 277 LIGLMRLVKNKRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELLPSLDPD 332
           L+G +           I  G  +LR++  L     + R ++     +  L++ L S    
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT 394

Query: 333 CLQLALCILDALS-SLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSIC 387
            +  A   L  LS   P+ + AL D    +     L+    +     + + L ++ 
Sbjct: 395 IVSNACGTLWNLSARNPKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 30/204 (14%), Positives = 70/204 (34%), Gaps = 12/204 (5%)

Query: 154 LLGTLKKVKGQARVQALKELHQIAA-AHASARKTMVDEGGVALISSLLGPFTSHAVGSEA 212
           L+  LK      +      L  ++  A  +++KT+ + G V  +          +     
Sbjct: 248 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307

Query: 213 VGVLVNLT-LDSESKTNLMQ-----PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF 266
           +  L NL+   +E+K ++          V  L       ++    +   ++  +      
Sbjct: 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367

Query: 267 RPE---IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN-EVRSLVVSIGAVPQL 322
             +   I+  +  L  L++ +K+      +      L ++   N + +  +  +GAV  L
Sbjct: 368 NEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 426

Query: 323 VELLPSLDPDCLQLALCILDALSS 346
             L+ S        +   L  L +
Sbjct: 427 KNLIHSKHKMIAMGSAAALRNLMA 450

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 63.8 bits (156), Expect = 5e-12
 Identities = 36/185 (19%), Positives = 74/185 (40%), Gaps = 4/185 (2%)

Query: 164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS 223
           Q    AL++L QIA+      + ++D G +  +  LL    +  +  EA+  L N+    
Sbjct: 27  QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG 85

Query: 224 ESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMR 282
             +   +  A  +  LV +L+  + +        +  +    + + + V     L  L++
Sbjct: 86  NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145

Query: 283 LVKNKRHPNGILPGLSLLRSICLLN-EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCIL 341
           L+ +  +   +   L  L +I     E +  V   GA+ +L +L    +    + A   L
Sbjct: 146 LLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204

Query: 342 DALSS 346
           + L S
Sbjct: 205 EKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 18/201 (8%)

Query: 235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLI----GLMRLVKNKRHP 290
           +  +V  LN    +   +  R + ++    +            +     L  LV+    P
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGN-------EQIQAVIDAGALPALVQLLSSP 66

Query: 291 NGIL--PGLSLLRSICLLNEV-RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL 347
           N  +    L  L +I          V+  GA+P LV+LL S +   LQ AL  L  ++S 
Sbjct: 67  NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126

Query: 348 -PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAK 406
             E   A+ D A  +P  V+LL   +E   Q AL  L +I      E   A  +AG   K
Sbjct: 127 GNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEK 184

Query: 407 LFLVIQSGCNPVLKQRSAELL 427
           L  +     N  +++ + E L
Sbjct: 185 LEQLQSHE-NEKIQKEAQEAL 204

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 310 RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLL 368
                    +PQ+V+ L S D   LQ AL  L  ++S   E   A+ D A  +P  V+LL
Sbjct: 5   HHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID-AGALPALVQLL 63

Query: 369 MRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQ 421
              +E   Q AL  L +I      E   A +DAG    L  ++ S    +L++
Sbjct: 64  SSPNEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 115

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 59.7 bits (145), Expect = 5e-12
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 68  SVFVCPISLEPMQDPV-TLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKT 124
           S  +C IS +  + PV +  +   +E+S + ++        P T + L  + +     
Sbjct: 2   SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-DTGNDPITNEPLSIEEIVEIVP 58

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 62.2 bits (150), Expect = 2e-10
 Identities = 55/305 (18%), Positives = 105/305 (34%), Gaps = 20/305 (6%)

Query: 154 LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVA------LISSLLGPFTSHA 207
           L           RV+AL  L ++ +             G A          L+ P     
Sbjct: 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394

Query: 208 VGSEAVGVLVNLTLDSESKTNLMQ-PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF 266
           +   A   L  LTLD+E K  L++  A +  L+D+   G+             L    + 
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 267 RPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL 326
           +  +            +++  +     +P    L  +  +N+  +++ + G    L  L 
Sbjct: 455 QEMLP----------EMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA 504

Query: 327 PSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI 386
            +   +  +L   +L+A+  L E +  +      +   +R+ +  +E   ++A   L  I
Sbjct: 505 KTESHNSQELIARVLNAVCGLKELRGKVVQE-GGVKALLRMALEGTEKGKRHATQALARI 563

Query: 387 C-KIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAE-LLKLCSLNYTDTTFISKCK 444
              I PE   S      +   L  ++Q  C  +    S   L  L S+N +    I K +
Sbjct: 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ 623

Query: 445 LTRTI 449
               I
Sbjct: 624 GVSKI 628

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 56.6 bits (136), Expect = 4e-09
 Identities = 40/267 (14%), Positives = 93/267 (34%), Gaps = 16/267 (5%)

Query: 139 LMKKRSEDVQGRASELLGTLKK-VKGQARVQALKELHQIAAAHASARKTMVDEGGVALIS 197
            MK     +        G  ++    Q R  AL+ L  +     +A        G+ L+ 
Sbjct: 29  QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAA-DFCQLSGMHLLV 87

Query: 198 SLLGPFTSHAVGSEAVGVLVNL-TLDSESKTNLMQPAKVSLLVDMLN-EGSVETKINCTR 255
                  +  +   A  ++       +  +  ++    +  L+ +L+ +     ++    
Sbjct: 88  GRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALF 147

Query: 256 LIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN-EVRSLVV 314
            I  L+ E++              LMR ++ +      +    LL+++ + + E +  + 
Sbjct: 148 AISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLC 206

Query: 315 SIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLL------ 368
           S+G V QLV L+ +      +  L  L +L +  +    +++C         LL      
Sbjct: 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVT--DFPQGVRECREPELGLEELLRHRCQL 264

Query: 369 MRVSEDCTQ--YALSILWSICKIAPEE 393
           ++  E+  +       L   C  +P +
Sbjct: 265 LQQHEEYQEELEFCEKLLQTCFSSPAD 291

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 54.2 bits (129), Expect = 2e-08
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 60  ELDLAEIPSVFVCPISLEPMQDPVT-LCTGQTYERSNILKWFSL-GRYTCPTT--MQELW 115
           +L +        CPI+ +P + P+        ++R  I  +        CP     Q + 
Sbjct: 172 DLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231

Query: 116 DDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDV 147
                 +  +         ++     KRS   
Sbjct: 232 MRDFVRDPIMELRCKIAKMKESQEQDKRSSQA 263

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 39/253 (15%), Positives = 77/253 (30%), Gaps = 31/253 (12%)

Query: 164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS 223
           + +      +        SA++ +   GG+  +  LL    +  V   A G L NL   S
Sbjct: 17  KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRS 75

Query: 224 -ESKTNLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLM 281
             +K    +   +   V +L   G+ E +   T L+  L    + + E+++         
Sbjct: 76  TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA--------- 126

Query: 282 RLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCIL 341
                       LP L+    I                         +DP+    A   L
Sbjct: 127 ----------DALPVLADRVIIPFSGWCDGNSNMSRE---------VVDPEVFFNATGCL 167

Query: 342 DALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDA 401
             LSS   G+  +++ +  I + +  +            S+   +C +        A   
Sbjct: 168 RNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVP 227

Query: 402 GLAAKLFLVIQSG 414
               +L    ++ 
Sbjct: 228 TRYRQLEYNARNA 240

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 51/349 (14%), Positives = 105/349 (30%), Gaps = 59/349 (16%)

Query: 139 LMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISS 198
           L++  +++VQ  A+  L  L                       + +     + G+    S
Sbjct: 52  LLRSPNQNVQQAAAGALRNL------------------VFRSTTNKLETRRQNGIREAVS 93

Query: 199 LLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDML---------------- 242
           LL    +  +  +  G+L NL+   E K  L+  A + +L D +                
Sbjct: 94  LLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADA-LPVLADRVIIPFSGWCDGNSNMSR 152

Query: 243 NEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRS 302
                E   N T  +  L      R  + +   L+  LM  V+N           S+   
Sbjct: 153 EVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN-CVAASRCDDKSVENC 211

Query: 303 ICLLNEVRSLVVSIGAVPQLVELLPSLDPD----------------CLQLALCILDALSS 346
           +C+L+ +   + +            + +                        C L    +
Sbjct: 212 MCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEET 271

Query: 347 LPEGKLALKDCANTIPNTVRLLMRVSEDCTQ-YALSILWSIC----KIAPEECSSAAVDA 401
            P+G   L    + I   + L+ +  +D T       L ++      ++        +  
Sbjct: 272 NPKGSGWLYHS-DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKE 330

Query: 402 GLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISKCKLTRTIQ 450
               ++  ++QSG + V  +  A LL   S +      +         +
Sbjct: 331 KGLPQIARLLQSGNSDV-VRSGASLLSNMSRHPLLHRVMGNQVFPEVTR 378

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 3/118 (2%)

Query: 319 VPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQ 377
           +P+ V+ L S D     +    +          K  +      I   V LL   +++  Q
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSPNQNVQQ 62

Query: 378 YALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT 435
            A   L ++                   +   +++   N  ++++   LL   S    
Sbjct: 63  AAAGALRNLV-FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 20/132 (15%)

Query: 56  KMIAELDLAEIPSVFVCPISLEPMQDPVTL--CTGQTYERSNILKWFSLGRYTCPTTMQE 113
            +   +    + S  +CPI L+ +++ +T   C    +    I+     G   CPT  ++
Sbjct: 41  GLEIVVSPRSLHSELMCPICLDMLKNTMTTKEC-LHRFCADCIITALRSGNKECPTCRKK 99

Query: 114 LW-DDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQA------- 165
           L    S+ P+     LI         +   R E    +   L    K    QA       
Sbjct: 100 LVSKRSLRPDPNFDALI-------SKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEE 152

Query: 166 --RVQALKELHQ 175
             ++QA+  L +
Sbjct: 153 GLKIQAMNRLQR 164

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 47.6 bits (112), Expect = 5e-06
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 9/143 (6%)

Query: 279 GLMRLVKNKRHPNGIL--PGLSLLRSICLLNE-VRSLVVSIGAVPQLVELLPSLDPDCLQ 335
            L  ++         +     + L+ +C  N+ V++ V  +  +P LV LL     +   
Sbjct: 49  ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL 108

Query: 336 LALCILDALSSL--PEGKLALKDCANTIPNTVRLLMRVSEDCTQY-ALSILWSICKIAPE 392
            A   L  +S     + K+A+K+C + +P  VRLL +  +          LW++   + +
Sbjct: 109 GACGALKNISFGRDQDNKIAIKNC-DGVPALVRLLRKARDMDLTEVITGTLWNLS--SHD 165

Query: 393 ECSSAAVDAGLAAKLFLVIQSGC 415
                 VD  L A    VI    
Sbjct: 166 SIKMEIVDHALHALTDEVIIPHS 188

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 18/127 (14%), Positives = 36/127 (28%)

Query: 307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVR 366
                       +P+++ +L          A   L  L    +           IP  V 
Sbjct: 38  GGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVG 97

Query: 367 LLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAEL 426
           LL    ++    A   L +I     ++   A  +      L  +++   +  L +     
Sbjct: 98  LLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGT 157

Query: 427 LKLCSLN 433
           L   S +
Sbjct: 158 LWNLSSH 164

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 44.9 bits (105), Expect = 4e-05
 Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 27/218 (12%)

Query: 166 RVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL--DS 223
           +  A   L  +   +   +  +    G+ ++  LL       V   A G L N++   D 
Sbjct: 65  KSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQ 123

Query: 224 ESKTNLMQPAKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSS------HRL 276
           ++K  +     V  LV +L +   ++     T  +  L      + EIV          +
Sbjct: 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEV 183

Query: 277 LIGLMRLVKNKRH---------PNGILPGLSLLRSICLLNEV--RSLVVSIGAVPQLVEL 325
           +I      +              + +      LR++        R L    G V  L+ +
Sbjct: 184 IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFI 243

Query: 326 LPSL------DPDCLQLALCILDALSSLPEGKLALKDC 357
           + +       D   ++  +C+L  LS     ++   + 
Sbjct: 244 VQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 44.6 bits (104), Expect = 5e-05
 Identities = 39/189 (20%), Positives = 64/189 (33%), Gaps = 15/189 (7%)

Query: 187 MVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGS 246
            +    V        P   H  GS A   L +L        N  QP  +  ++ ML    
Sbjct: 5   FMIGEEVPSDQYYWAPLAQHERGSLAS--LDSLRKGGPPPPNWRQPE-LPEVIAMLGFRL 61

Query: 247 VETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN-----KRHPNGILPGLSLLR 301
              K N    ++ L    D     V   + +  L+ L+ +          G L  +S  R
Sbjct: 62  DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121

Query: 302 SICLLNEVRSLVVSIGAVPQLVELL-PSLDPDCLQLALCILDALSSLPEGKLALKDCANT 360
                 + +  + +   VP LV LL  + D D  ++    L  LSS    K+ + D A  
Sbjct: 122 D----QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA-- 175

Query: 361 IPNTVRLLM 369
           +      ++
Sbjct: 176 LHALTDEVI 184

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 43.8 bits (102), Expect = 9e-05
 Identities = 26/203 (12%), Positives = 64/203 (31%), Gaps = 17/203 (8%)

Query: 168 QALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT 227
            A    +    + A   + +     V +  SLL    + A+   + G + NL     +  
Sbjct: 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG 344

Query: 228 NLMQPAK-----VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMR 282
             ++ A      +S + D+L           +  +  L  +   +  I      +  L++
Sbjct: 345 RYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI--GKHAIPNLVK 402

Query: 283 LVKNKRHPNGILPGLSLLRSIC--LLN------EVRSLVVSIGAVPQLVELL--PSLDPD 332
            +   +  +        + SI   +        E    +     + +LV +    +    
Sbjct: 403 NLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEK 462

Query: 333 CLQLALCILDALSSLPEGKLALK 355
            ++ A  +L  +    E +  L+
Sbjct: 463 EVRAAALVLQTIWGYKELRKPLE 485

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 63  LAEIPSVFVCPISLEPMQDPVTLCT-GQTYERSNILKWFSLGRYTCPTTMQELWDDSVTP 121
           +  I  VF C I +E ++D        +    S I +W +  R  CP     L    +  
Sbjct: 16  VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVN 75

Query: 122 NKTLYHLIHTWFSQKYLLMKKRSED 146
            +    +     + +   + K  E+
Sbjct: 76  CRWAEEVTQQLDTLQLCSLTKHEEN 100

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 297 LSLLRSICLLN-EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLAL 354
            + ++  C    E R  V  +  + +L++LL   + D  +     L  L     + KL +
Sbjct: 31  ATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV 90

Query: 355 KDCANTIPNTVRLLMRVSEDCTQY-ALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS 413
            +  N +P  +++L +  +  T+     +LW++   + ++  +  +   L      +I  
Sbjct: 91  AEL-NGVPRLLQVLKQTRDLETKKQITGLLWNLS--SNDKLKNLMITEALLTLTENIIIP 147

Query: 414 GCN 416
              
Sbjct: 148 FSG 150

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 34/212 (16%), Positives = 77/212 (36%), Gaps = 19/212 (8%)

Query: 194 ALISSLLGPFTSHAVGSEAVGVLVNLTL-DSESKTNLMQPAKVSLLVDMLNEGSVETKIN 252
             +S L       +  S A   + +     SE++  + Q   +  L+ +L   + + +  
Sbjct: 12  RAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRA 71

Query: 253 CTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSL 312
               +  L+ E +     V+    +  L++++K  R          LL ++   +++++L
Sbjct: 72  VCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL 131

Query: 313 VVSIGAVPQLVELL----------------PSLDPDCLQLALCILDALSSL-PEGKLALK 355
           +++  A+  L E +                  LD D        L  +SS   +G+ A++
Sbjct: 132 MIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMR 190

Query: 356 DCANTIPNTVRLLMRVSEDCTQYALSILWSIC 387
            C   I + V  +     D      +    +C
Sbjct: 191 RCDGLIDSLVHYVRGTIADYQPDDKATENCVC 222

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 63  LAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL-WDDSVTP 121
           L ++   F+C    E +  PVT        +  + + F    ++CP    +L  +  + P
Sbjct: 72  LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIP 131

Query: 122 NKTLYHLIHTWFSQ 135
           N+ L  L+  +F  
Sbjct: 132 NEILQTLLDLFFPG 145

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 65  EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKT 124
            + S + CPI L  +++ V    G  + ++ I+K      + CP   + L ++ + P+  
Sbjct: 14  PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF 73

Query: 125 LYHLI 129
               I
Sbjct: 74  AKREI 78

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 65  EIPSVFVCPISLEPMQDPVTL-CTGQTYERSNILK-WFSLGRYTCPTTMQE-LWDDSVTP 121
            IP   +C I  + M D V + C G +Y    I         +TCPT  Q  +  D++  
Sbjct: 9   PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIA 68

Query: 122 NKTLYHLIHTWFSQKYLLMKKRSE 145
           NK L   ++ + ++     + R +
Sbjct: 69  NKFLRQAVNNFKNETGYTKRLRKQ 92

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 8/57 (14%), Positives = 16/57 (28%)

Query: 63  LAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV 119
           +  +   + C      +  P     G  +  S +    S     C    + +  D V
Sbjct: 9   VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 29/66 (43%)

Query: 65  EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKT 124
            + S + CPI L  +++ V    G  + ++ I+K      + CP   + L ++ + P+  
Sbjct: 14  PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF 73

Query: 125 LYHLIH 130
               I 
Sbjct: 74  AKREIL 79

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 63  LAEIPSVFVCPISLEPMQDPVTL--CTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120
           +  I  +  C I  E     + +  C    Y    I K+ S  +  CPT    + +  + 
Sbjct: 16  MKTIDDLLRCGICFEYFNIAMIIPQC-SHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLK 73

Query: 121 PNKTLYHLIHTWFSQKYLLMKKRSE 145
            N+ L  L+ +    +  L++   E
Sbjct: 74  NNRILDELVKSLNFARNHLLQFALE 98

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 62  DLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTP 121
           + A   +V  C I L+    PV+L     +    +     LG+  C    QE+ +D +  
Sbjct: 8   NTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPEDFLDS 66

Query: 122 N 122
            
Sbjct: 67  G 67

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 38.4 bits (89), Expect = 9e-04
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 63  LAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCP 108
           L+++   F C    E +  P+T        +  + + F    ++CP
Sbjct: 46  LSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCP 91

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 59  AELDLAEIPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWF-SLGRYTCPT 109
           +  +   IP   +C I  + M D V + C G +Y    I         +TCPT
Sbjct: 5   SSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPT 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	450
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.96
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.96
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.96
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.96
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.95
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.94
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.94
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.93
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.93
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.93
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.92
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.92
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.92
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.91
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.89
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.86
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.86
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.86
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.85
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.84
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.83
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.82
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.81
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.8
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.77
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.75
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.65
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.65
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.62
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.54
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.53
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.5
3grl_A	651	General vesicular transport factor P115; vesicle t	99.5
3grl_A	651	General vesicular transport factor P115; vesicle t	99.46
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.45
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.44
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.41
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.4
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.4
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.39
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.39
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.38
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.37
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.37
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.37
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.36
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.36
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.35
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.33
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.32
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.29
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.28
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.27
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.26
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.25
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.25
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.23
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.2
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.2
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.18
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.15
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.15
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.13
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.12
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.1
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.09
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.07
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.07
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.99
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.95
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.92
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.91
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.91
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.9
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.89
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.89
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.89
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.87
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.86
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.85
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.85
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.84
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.83
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.82
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.77
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.7
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.7
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.69
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.69
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.68
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.61
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.6
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.56
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.54
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.54
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.43
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.4
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.39
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.37
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.33
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.31
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.24
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.19
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.19
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.19
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.14
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.13
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.08
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.07
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.03
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.03
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.01
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.99
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.96
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.94
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.93
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.81
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.79
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.74
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.72
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.71
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.61
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.58
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.48
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.47
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.46
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.26
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.2
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.18
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.01
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	96.97
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.89
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.82
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	96.82
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.77
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.43
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.27
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.82
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	95.74
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.56
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.24
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	95.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.76
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	94.71
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.08
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	93.62
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	93.59
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.31
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.1
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.51
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.5
3nw0_A	238	Non-structural maintenance of chromosomes element	92.26
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	91.66
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	91.47
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	91.0
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	90.08
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	88.79
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	88.05
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	87.39
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	87.23
2x1g_F	971	Cadmus; transport protein, developmental protein,	85.98
2x19_B	963	Importin-13; nuclear transport, protein transport;	84.93
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	84.92
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	84.82
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	84.55
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	84.29
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	83.66
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	83.61
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	83.45
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	81.78
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	81.73
2x19_B	963	Importin-13; nuclear transport, protein transport;	81.11
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	80.45
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	80.3
2kkx_A	102	Uncharacterized protein ECS2156; methods developme	80.02

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=1.1e-32  Score=273.95  Aligned_cols=266  Identities=21%  Similarity=0.190  Sum_probs=231.9

Q ss_pred             HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC----------CCChhhHHHHHHHHHhcCCCc-hhhhhccC-
Q 041252          164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGP----------FTSHAVGSEAVGVLVNLTLDS-ESKTNLMQ-  231 (450)
Q Consensus       164 ~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~----------~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~-  231 (450)
                      ..+.+|+++|.+++.+ +++|+.|++.|++++|+.+|..          ..+..++.+|+++|.||+.++ ++|..+.. 
T Consensus        47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            4556899999999865 7899999999999999999942          113568999999999999866 47877754 


Q ss_pred             CCchHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-ChHH
Q 041252          232 PAKVSLLVDMLNEGSVETKINCTRLIEKLMEE-KDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LNEV  309 (450)
Q Consensus       232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~~~  309 (450)
                      .|+|+.|+.+|++++.++++.|+++|++|+.. ++.++..+.+.|+++.|+++|....++.+++.++++|+||+. ++++
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n  205 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  205 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence            56699999999999999999999999999874 445666777889999999986543367889999999999998 7789


Q ss_pred             HHHHH-hcCCHHHHHHhcCCCCh----hHHHHHHHHHHHhcC----ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHH
Q 041252          310 RSLVV-SIGAVPQLVELLPSLDP----DCLQLALCILDALSS----LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYAL  380 (450)
Q Consensus       310 ~~~iv-~~G~v~~Lv~lL~~~~~----~~~~~al~~L~~L~~----~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~  380 (450)
                      |..++ ..|+++.|+++|.+++.    ++++.|+++|++|+.    +++++..+.+ .|+|+.|+++|.+++..++++|+
T Consensus       206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~  284 (354)
T 3nmw_A          206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNAC  284 (354)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCHHHHHHHH
T ss_pred             hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCChHHHHHHH
Confidence            99998 69999999999987654    589999999999995    7999999998 89999999999999999999999


Q ss_pred             HHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          381 SILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       381 ~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      ++|++|+..++ +.++.+++.|+++.|+.+++++ ++.+|+.|+.+|+++..+
T Consensus       285 ~aL~nLa~~~~-~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          285 GTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHHHTSSCH-HHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcC
Confidence            99999997665 4466788999999999999998 788999999999999887

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.97  E-value=4e-31  Score=270.41  Aligned_cols=264  Identities=21%  Similarity=0.188  Sum_probs=229.9

Q ss_pred             HHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC----------CCChhhHHHHHHHHHhcCCCch-hhhhcc-CCCch
Q 041252          168 QALKELHQIAAAHASARKTMVDEGGVALISSLLGP----------FTSHAVGSEAVGVLVNLTLDSE-SKTNLM-QPAKV  235 (450)
Q Consensus       168 ~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~----------~~~~~v~~~Al~~L~~Ls~~~~-~k~~i~-~~g~i  235 (450)
                      +|+++|.+++. +++||..|.+.|++++|+.+|..          ..+..++++|+++|.||+.+++ +|..+. ..|+|
T Consensus       167 qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI  245 (458)
T 3nmz_A          167 PAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM  245 (458)
T ss_dssp             HHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence            89999999964 58899999999999999999942          1135689999999999998764 777775 45679


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-ChHHHHHH
Q 041252          236 SLLVDMLNEGSVETKINCTRLIEKLMEE-KDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LNEVRSLV  313 (450)
Q Consensus       236 ~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~~~~~~i  313 (450)
                      +.|+.+|.+++.++++.|+++|++|+.. ++.++..+.+.|+++.|+++|....++.+++.++++|+||+. +++++..+
T Consensus       246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I  325 (458)
T 3nmz_A          246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI  325 (458)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            9999999999999999999999999874 445667777889999999986554467889999999999998 78899999


Q ss_pred             H-hcCCHHHHHHhcCCCCh----hHHHHHHHHHHHhcC----ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252          314 V-SIGAVPQLVELLPSLDP----DCLQLALCILDALSS----LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW  384 (450)
Q Consensus       314 v-~~G~v~~Lv~lL~~~~~----~~~~~al~~L~~L~~----~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~  384 (450)
                      + ..|+++.|+++|.+.+.    ++++.|+++|+||+.    +++++..+.+ .|+|+.|+++|.+++..++++|+++|+
T Consensus       326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~~~A~~aL~  404 (458)
T 3nmz_A          326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTLW  404 (458)
T ss_dssp             HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHHHHHHHHHH
Confidence            9 69999999999987654    489999999999994    7999999998 899999999999999999999999999


Q ss_pred             HhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252          385 SICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       385 ~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~  435 (450)
                      +++..++ +.+..+++.|+++.|+.+++++ ++.+++.|+.+|+++..+.+
T Consensus       405 nLa~~~~-~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          405 NLSARNP-KDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HHHSSCH-HHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHcCCH-HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCH
Confidence            9997665 4466788999999999999988 78899999999999887743

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=3.3e-30  Score=265.53  Aligned_cols=283  Identities=18%  Similarity=0.186  Sum_probs=237.8

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhhhh
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESKTN  228 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k~~  228 (450)
                      .++.++..|++++.+.|..|+.+|++++..++.+|..+++.|+||.|+.+|++. +..++..|+++|.||+.+ +++|..
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            478899999999999999999999999987777898999999999999999875 788999999999999986 899999


Q ss_pred             ccCCCchHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh--------cC-------CCccc
Q 041252          229 LMQPAKVSLLVDMLN-EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK--------NK-------RHPNG  292 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~--------~~-------~~~~~  292 (450)
                      |++.|+|+.|+.+|. ++++++++.|+++|++|+..++ .+..+.+ |+++.|+++|.        +.       .++.+
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~-~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v  159 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH-hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence            999999999999999 8899999999999999998754 4444556 99999999993        22       12334


Q ss_pred             hhHHHHHHHHhccChHHHHHHHhc-CCHHHHHHhcCC------CChhHHHHHHHHHHHhcCCh-----------------
Q 041252          293 ILPGLSLLRSICLLNEVRSLVVSI-GAVPQLVELLPS------LDPDCLQLALCILDALSSLP-----------------  348 (450)
Q Consensus       293 ~~~al~aL~~Ls~~~~~~~~iv~~-G~v~~Lv~lL~~------~~~~~~~~al~~L~~L~~~~-----------------  348 (450)
                      .+.|+++|+|||.+++++..+++. |++++|+.+|.+      .+..+++.|+.+|++|+...                 
T Consensus       160 ~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            559999999999889999999998 999999999975      45679999999999997421                 


Q ss_pred             ----------------------------------hhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccCchh
Q 041252          349 ----------------------------------EGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSICKIAPEE  393 (450)
Q Consensus       349 ----------------------------------e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~~  393 (450)
                                                        ++...+.+ .|+++.|+.+|.+. ++.+++.|+++|+++|..+...
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~  318 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence                                              12223344 67899999999875 5899999999999999865432


Q ss_pred             ---HHHHHH-hcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252          394 ---CSSAAV-DAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT  437 (450)
Q Consensus       394 ---~~~~~~-~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~  437 (450)
                         ..+.++ +.|+++.|+.+++++ +..+++.|+++|++++.+.+..
T Consensus       319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~~~~  365 (457)
T 1xm9_A          319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPLLH  365 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSGGGH
T ss_pred             hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCHHHH
Confidence               213344 589999999999998 7889999999999998875443

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=1.2e-29  Score=265.23  Aligned_cols=288  Identities=16%  Similarity=0.164  Sum_probs=236.5

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC--chh
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD--SES  225 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~--~~~  225 (450)
                      ++.++.||..|.+++.+.|..|+.+|++++..+.++|..|++.|+||.|+.+|++. +..+++.|+++|.||+.+  +++
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHH
Confidence            46799999999999999999999999999998899999999999999999999886 789999999999999984  799


Q ss_pred             hhhccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc-----------------C
Q 041252          226 KTNLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN-----------------K  287 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~-----------------~  287 (450)
                      |..|++.|+|+.|+.+|.+ .+.+++++|+++|++|+..++.+..+ .+ ++++.|++++..                 .
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I-~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI-VD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHH-HH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHH-Hh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999997 58899999999999998865544444 44 569999998721                 1


Q ss_pred             CCccchhHHHHHHHHhccCh-HHHHHHHhc-CCHHHHHHhcCC------CChhHHHHHHHHHHHhcCChhh---------
Q 041252          288 RHPNGILPGLSLLRSICLLN-EVRSLVVSI-GAVPQLVELLPS------LDPDCLQLALCILDALSSLPEG---------  350 (450)
Q Consensus       288 ~~~~~~~~al~aL~~Ls~~~-~~~~~iv~~-G~v~~Lv~lL~~------~~~~~~~~al~~L~~L~~~~e~---------  350 (450)
                      .++.++++|.++|+||+.+. ++|..+++. |++++|+.+|++      .+...++.|+++|+||+..-+.         
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            13578889999999999765 569999985 667899999964      4678999999999999976221         


Q ss_pred             -----------------HHHHhccCCChHHHHHHHhc-CChHHHHHHHHHHHHhcccCch---hHHHHHHhcChHHHHHH
Q 041252          351 -----------------KLALKDCANTIPNTVRLLMR-VSEDCTQYALSILWSICKIAPE---ECSSAAVDAGLAAKLFL  409 (450)
Q Consensus       351 -----------------r~~i~~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~---~~~~~~~~~G~i~~L~~  409 (450)
                                       ...+.. .++|+.|+.+|.. .++.++|+|+++|++||.....   ..+..+.+.|+++.|+.
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~  362 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD  362 (584)
T ss_dssp             ------------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred             hhcccccccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence                             111112 3456778999964 5789999999999999876521   22223345789999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHhhcCCCccc
Q 041252          410 VIQSGCNPVLKQRSAELLKLCSLNYTDTTFI  440 (450)
Q Consensus       410 ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~i  440 (450)
                      ||.++ ++.+++.|..+|++|+.+..+...|
T Consensus       363 LL~s~-~~~v~~~A~~aL~nLs~~~~~~~~I  392 (584)
T 3l6x_A          363 LLTNE-HERVVKAASGALRNLAVDARNKELI  392 (584)
T ss_dssp             GGGCS-CHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHcCC-CHHHHHHHHHHHHHHhCChhHHHHH
Confidence            99998 7889999999999999986655544

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.96  E-value=4.4e-29  Score=255.33  Aligned_cols=282  Identities=16%  Similarity=0.132  Sum_probs=239.7

Q ss_pred             hhcHHHHHHHhhcc------------chHHHHHHHHHHHHHHHHcHHHHHHHHhhCCh----------HHHHhhhCCCC-
Q 041252          148 QGRASELLGTLKKV------------KGQARVQALKELHQIAAAHASARKTMVDEGGV----------ALISSLLGPFT-  204 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~------------~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i----------~~Lv~lL~~~~-  204 (450)
                      .|.++.|++.|+..            +.+.+.+|+++|.+++..+++......+.|++          +.+++++.+.. 
T Consensus        69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (458)
T 3nmz_A           69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP  148 (458)
T ss_dssp             HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence            47899999999863            25899999999999999998888888898988          66667776531 


Q ss_pred             Chh-----hHH-------HHHHHHHhcCCCchhhhhccCCCchHHHHHHhcC-----------CCHHHHHHHHHHHHHHh
Q 041252          205 SHA-----VGS-------EAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNE-----------GSVETKINCTRLIEKLM  261 (450)
Q Consensus       205 ~~~-----v~~-------~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~aa~~L~~La  261 (450)
                      +.+     +.+       .|+++|.|++.++++|..|.+.|++++|+.+|..           .+++++.+|+++|.+|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa  228 (458)
T 3nmz_A          149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT  228 (458)
T ss_dssp             SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence            112     333       8999999999999999999999999999999952           24778999999999999


Q ss_pred             ccCCChhhHhh-hhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc--ChHHHHHHHhcCCHHHHHHh-cCCCChhHHHHH
Q 041252          262 EEKDFRPEIVS-SHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL--LNEVRSLVVSIGAVPQLVEL-LPSLDPDCLQLA  337 (450)
Q Consensus       262 ~~~~~~~~~~~-~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~--~~~~~~~iv~~G~v~~Lv~l-L~~~~~~~~~~a  337 (450)
                      ..++..+..+. ..|+++.|+++|.++ +++++..|+++|+||+.  ++++|..+++.|+|++|+++ +++++..+++.|
T Consensus       229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A  307 (458)
T 3nmz_A          229 FGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV  307 (458)
T ss_dssp             TTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred             CCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence            87765555554 567799999999976 68899999999999996  46799999999999999997 566788999999


Q ss_pred             HHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCCh----HHHHHHHHHHHHhcc---cCchhHHHHHHhcChHHHHHH
Q 041252          338 LCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSE----DCTQYALSILWSICK---IAPEECSSAAVDAGLAAKLFL  409 (450)
Q Consensus       338 l~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~----~~~e~A~~~L~~L~~---~~~~~~~~~~~~~G~i~~L~~  409 (450)
                      +.+|+||+. +++++..+....|+||.|+++|.+.++    .+++.|+++|++|+.   .++ +.++.+++.|+++.|+.
T Consensus       308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~-~~~~~i~~~G~i~~Lv~  386 (458)
T 3nmz_A          308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE-DHRQILRENNCLQTLLQ  386 (458)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHcccHHHHHH
Confidence            999999998 789999998448999999999988764    489999999999997   344 45667789999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHh
Q 041252          410 VIQSGCNPVLKQRSAELLKLCSL  432 (450)
Q Consensus       410 ll~s~~~~~~k~~A~~lL~~ls~  432 (450)
                      +|.++ +..+++.|+.+|.+++.
T Consensus       387 LL~~~-~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          387 HLKSH-SLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             HSSCS-CHHHHHHHHHHHHHHHS
T ss_pred             HHcCC-ChHHHHHHHHHHHHHHc
Confidence            99988 78899999999999884

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=2.1e-28  Score=255.92  Aligned_cols=291  Identities=18%  Similarity=0.195  Sum_probs=236.4

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHH-cHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAA-HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK  226 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k  226 (450)
                      .|.|+.|+.+|++++.++|..|+.+|++++.. +++||..|++.|+||.|+.+|++..+.++++.|+++|++|+.++++|
T Consensus        89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k  168 (584)
T 3l6x_A           89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK  168 (584)
T ss_dssp             TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred             cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence            37799999999999999999999999999984 68899999999999999999986446789999999999999999999


Q ss_pred             hhccCCCchHHHHHHhc------------------CCCHHHHHHHHHHHHHHhccCCC-hhhHhhhhhHHHHHHHHHh--
Q 041252          227 TNLMQPAKVSLLVDMLN------------------EGSVETKINCTRLIEKLMEEKDF-RPEIVSSHRLLIGLMRLVK--  285 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~------------------~~~~~~~~~aa~~L~~La~~~~~-~~~~~~~~g~l~~Lv~lL~--  285 (450)
                      ..|++ ++++.|+.+|.                  ..+.+++++|+++|++|+..++. +..+....|+++.|+.+|+  
T Consensus       169 ~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~  247 (584)
T 3l6x_A          169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE  247 (584)
T ss_dssp             HHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred             HHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence            99985 67999999872                  23579999999999999876544 3333333455555555543  


Q ss_pred             -----------------------------------------------------------------------cCCCccchh
Q 041252          286 -----------------------------------------------------------------------NKRHPNGIL  294 (450)
Q Consensus       286 -----------------------------------------------------------------------~~~~~~~~~  294 (450)
                                                                                             ...++.+++
T Consensus       248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E  327 (584)
T 3l6x_A          248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE  327 (584)
T ss_dssp             HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred             hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence                                                                                   222344566


Q ss_pred             HHHHHHHHhccCh-----HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh
Q 041252          295 PGLSLLRSICLLN-----EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM  369 (450)
Q Consensus       295 ~al~aL~~Ls~~~-----~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~  369 (450)
                      +|++||+|||...     .++..+.+.|+++.|+++|.+++.++++.|+++|.||+..+.++..| + .|+||.||++|.
T Consensus       328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~-~g~ip~LV~LL~  405 (584)
T 3l6x_A          328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-G-KHAIPNLVKNLP  405 (584)
T ss_dssp             HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-H-HHHHHHHHHTSS
T ss_pred             HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-H-hCCHHHHHHHhc
Confidence            7778888886432     34445556899999999999999999999999999999999899888 4 599999999998


Q ss_pred             cC--------ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcC-CCHHHHHHHHHHHHHHHh--------
Q 041252          370 RV--------SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG-CNPVLKQRSAELLKLCSL--------  432 (450)
Q Consensus       370 ~~--------s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~-~~~~~k~~A~~lL~~ls~--------  432 (450)
                      +.        +..+...|+++|.||+..+++ .++.+.+.|+++.|+.++.++ .++.+++.|+.+|..+..        
T Consensus       406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~  484 (584)
T 3l6x_A          406 GGQQNSSWNFSEDTVISILNTINEVIAENLE-AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPL  484 (584)
T ss_dssp             SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             CCcccccccchHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHH
Confidence            76        467888999999999887764 466788999999999999875 468889999999988752        


Q ss_pred             ---hcCCCccccc
Q 041252          433 ---NYTDTTFISK  442 (450)
Q Consensus       433 ---~~~~~~~i~~  442 (450)
                         .|+.+.|++.
T Consensus       485 kk~G~~~~~f~~~  497 (584)
T 3l6x_A          485 EKEGWKKSDFQVN  497 (584)
T ss_dssp             HTTTCCGGGGCCC
T ss_pred             HHcCCCHHHhccc
Confidence               2666677654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=1.1e-28  Score=245.00  Aligned_cols=245  Identities=17%  Similarity=0.135  Sum_probs=213.6

Q ss_pred             hhcHHHHHHHhhc-----------cchHHHHHHHHHHHHHHHHcHHHHHHHHhh-CChHHHHhhhCCCCChhhHHHHHHH
Q 041252          148 QGRASELLGTLKK-----------VKGQARVQALKELHQIAAAHASARKTMVDE-GGVALISSLLGPFTSHAVGSEAVGV  215 (450)
Q Consensus       148 ~~~i~~Lv~~L~~-----------~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~-G~i~~Lv~lL~~~~~~~v~~~Al~~  215 (450)
                      .|.++.|+..|..           .+.+.|..|+.+|++++..+..+|..+... |+||.|+.+|++. +.++++.|+++
T Consensus        72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~a  150 (354)
T 3nmw_A           72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASV  150 (354)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC-CHHHHHHHHHH
Confidence            3678888888853           235689999999999998888899988765 5599999999875 78999999999


Q ss_pred             HHhcCCC--chhhhhccCCCchHHHHHHh-cCCCHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHhcCCCc-
Q 041252          216 LVNLTLD--SESKTNLMQPAKVSLLVDML-NEGSVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVKNKRHP-  290 (450)
Q Consensus       216 L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~~~~~~-  290 (450)
                      |.||+..  +++|..+++.|+|+.|+++| ++++.++++.|+.+|++|+... +.+..++...|+++.|+++|.++.+. 
T Consensus       151 L~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~  230 (354)
T 3nmw_A          151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN  230 (354)
T ss_dssp             HHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred             HHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcc
Confidence            9999974  57899999999999999975 5678999999999999998744 33444444789999999999875322 


Q ss_pred             --cchhHHHHHHHHhcc----ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc-CChhhHHHHhccCCChHH
Q 041252          291 --NGILPGLSLLRSICL----LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS-SLPEGKLALKDCANTIPN  363 (450)
Q Consensus       291 --~~~~~al~aL~~Ls~----~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~e~r~~i~~~~g~i~~  363 (450)
                        ++++.++++|+||+.    +++++..+++.|+++.|+++|.+++..+++.|+++|.||+ .+++++..+.+ .|+||.
T Consensus       231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~G~i~~  309 (354)
T 3nmw_A          231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD-MGAVSM  309 (354)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHH-CCCHHH
Confidence              378999999999995    8899999999999999999999999999999999999999 56999999998 899999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcccCchhH
Q 041252          364 TVRLLMRVSEDCTQYALSILWSICKIAPEEC  394 (450)
Q Consensus       364 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~  394 (450)
                      |+++|.+.++.+++.|+.+|++|+...++..
T Consensus       310 Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          310 LKNLIHSKHKMIAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             HHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999887654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.96  E-value=3.8e-28  Score=250.20  Aligned_cols=281  Identities=17%  Similarity=0.226  Sum_probs=231.8

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT  227 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~  227 (450)
                      .|.++.|+..|++++.+.+..|+.+|++++..++++|..+++.|+||.|+++|+...+.++++.|+++|.||+.++++|.
T Consensus        43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~  122 (457)
T 1xm9_A           43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE  122 (457)
T ss_dssp             TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence            47799999999999999999999999999987789999999999999999999833478999999999999999999999


Q ss_pred             hccCCCchHHHHHHh--------cCC--------CHHHHHHHHHHHHHHhccCCChhhHhhhh-hHHHHHHHHHhcC---
Q 041252          228 NLMQPAKVSLLVDML--------NEG--------SVETKINCTRLIEKLMEEKDFRPEIVSSH-RLLIGLMRLVKNK---  287 (450)
Q Consensus       228 ~i~~~g~i~~Lv~lL--------~~~--------~~~~~~~aa~~L~~La~~~~~~~~~~~~~-g~l~~Lv~lL~~~---  287 (450)
                      .+++ |+++.|+.+|        .++        +.+++.+|+++|++|+..+ ..+..+.+. |+++.|+.+|+++   
T Consensus       123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~  200 (457)
T 1xm9_A          123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD-AGRQTMRNYSGLIDSLMAYVQNCVAA  200 (457)
T ss_dssp             HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSH-HHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCH-HHHHHHHHcCCCHHHHHHHHHhhccc
Confidence            9999 9999999999        322        3556669999999998764 455556665 8899999888641   


Q ss_pred             --------------------------------------------------------------------------------
Q 041252          288 --------------------------------------------------------------------------------  287 (450)
Q Consensus       288 --------------------------------------------------------------------------------  287 (450)
                                                                                                      
T Consensus       201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  280 (457)
T 1xm9_A          201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY  280 (457)
T ss_dssp             TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred             cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence                                                                                            


Q ss_pred             ---------------CCccchhHHHHHHHHhccCh-----HH-HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252          288 ---------------RHPNGILPGLSLLRSICLLN-----EV-RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS  346 (450)
Q Consensus       288 ---------------~~~~~~~~al~aL~~Ls~~~-----~~-~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~  346 (450)
                                     .++.+++.|+++|+||+...     .. +..+.+.|++|.|+++|.+++.+++..|+++|.+|+.
T Consensus       281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~  360 (457)
T 1xm9_A          281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR  360 (457)
T ss_dssp             SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence                           01233445788999998532     12 3334468999999999999999999999999999999


Q ss_pred             ChhhHHHHhccCCChHHHHHHHhcCC------hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHH
Q 041252          347 LPEGKLALKDCANTIPNTVRLLMRVS------EDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLK  420 (450)
Q Consensus       347 ~~e~r~~i~~~~g~i~~Lv~lL~~~s------~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k  420 (450)
                      +++++..+..  |+|++|+++|...+      +++...++.+|.++...+++ ....+.+.|++++|+.++.++.++.++
T Consensus       361 ~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~-~~~~i~~~g~l~~L~~L~~~~~~~~i~  437 (457)
T 1xm9_A          361 HPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ-LAKQYFSSSMLNNIINLCRSSASPKAA  437 (457)
T ss_dssp             SGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcCCHHHHHHHHcCCCcHHHH
Confidence            9989888865  79999999998864      35778899999999887764 456677899999999999987567899


Q ss_pred             HHHHHHHHHHHhh
Q 041252          421 QRSAELLKLCSLN  433 (450)
Q Consensus       421 ~~A~~lL~~ls~~  433 (450)
                      ++|..+|..+-.+
T Consensus       438 ~~A~~~L~~~~~~  450 (457)
T 1xm9_A          438 EAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHHcc
Confidence            9999999865443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.96  E-value=7.4e-28  Score=259.68  Aligned_cols=283  Identities=14%  Similarity=0.112  Sum_probs=244.4

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcH-----------------------------HHH---HHHHhhCChHH
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHA-----------------------------SAR---KTMVDEGGVAL  195 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-----------------------------~~r---~~i~~~G~i~~  195 (450)
                      .+.++.|+.+|++.+...+..|+..|.+++...+                             .++   +.++++|++|.
T Consensus       420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~  499 (810)
T 3now_A          420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA  499 (810)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence            3678999999999888899999999999997431                             234   78899999999


Q ss_pred             HHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh--hh
Q 041252          196 ISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV--SS  273 (450)
Q Consensus       196 Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~--~~  273 (450)
                      |+.+|++. +..++++|+++|.|++.++++|..+++.|++++|+.+|.+++...+++|+++|.+|+.+.+....+.  ..
T Consensus       500 LV~LL~s~-s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~  578 (810)
T 3now_A          500 LCALAKTE-SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS  578 (810)
T ss_dssp             HHHHHTCC-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred             HHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence            99999885 7899999999999999999999999999999999999999999999999999999986543222111  13


Q ss_pred             hhHHHHHHHHHhcCCCccchhHHHHHHHHhccC-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHH
Q 041252          274 HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKL  352 (450)
Q Consensus       274 ~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~  352 (450)
                      .|++++|+.+|.++.+...+..|+++|.||+.. ++++..+++.|+++.|+++|.+.++.+++.|+.+|.||+.+++.+.
T Consensus       579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~  658 (810)
T 3now_A          579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK  658 (810)
T ss_dssp             HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred             hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence            578999999998542223345899999999965 6889999999999999999999999999999999999999999999


Q ss_pred             HHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHh-cChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252          353 ALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVD-AGLAAKLFLVIQSGCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       353 ~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~-~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls  431 (450)
                      .+.+..|+++.|+.++...+..+++.|+++|++++..++. ..+.+++ .|+++.|+.++.++ +..+++.|.+.+.++.
T Consensus       659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~-~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~  736 (810)
T 3now_A          659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK-CCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMI  736 (810)
T ss_dssp             HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred             HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence            9885468999999999999999999999999999986653 3456777 89999999999998 7889999999888876


Q ss_pred             hh
Q 041252          432 LN  433 (450)
Q Consensus       432 ~~  433 (450)
                      ..
T Consensus       737 ~~  738 (810)
T 3now_A          737 NA  738 (810)
T ss_dssp             TT
T ss_pred             hC
Confidence            54

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.96  E-value=4.4e-27  Score=245.57  Aligned_cols=281  Identities=20%  Similarity=0.204  Sum_probs=246.4

Q ss_pred             hhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chh
Q 041252          148 QGRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SES  225 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~  225 (450)
                      .|.++.|+..|++. +.+.|..|+++|.+++..++++++.+++.|+||.|+.+|++. +.++++.|+++|.||+.+ +++
T Consensus        99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B           99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHH
Confidence            47899999999764 578999999999999998999999999999999999999886 789999999999999986 477


Q ss_pred             hhhccCCCchHHHHHHhcCCC-----HHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHH
Q 041252          226 KTNLMQPAKVSLLVDMLNEGS-----VETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL  300 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~~-----~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL  300 (450)
                      |..+.+.|+++.|+.+|.+.+     ...+.+++++|.+++........+....++++.|++++.++ ++.++..++++|
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL  256 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAI  256 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence            888999999999999998653     45788999999999877665555566678999999999986 688999999999


Q ss_pred             HHhccChH-HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHH
Q 041252          301 RSICLLNE-VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQY  378 (450)
Q Consensus       301 ~~Ls~~~~-~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~  378 (450)
                      .+|+.+.. ....+++.|+++.|+++|.+.+..++..++.+|.+++.. ++.+..+.+ .|+++.|+.+|.+.+..+++.
T Consensus       257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~v~~~  335 (510)
T 3ul1_B          257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKE  335 (510)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGCC-CTTCSSHHHHHH
T ss_pred             HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh-ccchHHHHHHhcCCCHHHHHH
Confidence            99997655 455666899999999999999999999999999999865 667777887 899999999999999999999


Q ss_pred             HHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          379 ALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       379 A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      |+++|.+++..++ .....+.+.|+++.|+.++.++ +..+|+.|+.+|.++..+
T Consensus       336 A~~aL~nl~a~~~-~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~  388 (510)
T 3ul1_B          336 ATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSG  388 (510)
T ss_dssp             HHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcH-HHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcc
Confidence            9999999998876 4456778899999999999998 788999999999988765

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.95  E-value=1.5e-26  Score=242.46  Aligned_cols=281  Identities=20%  Similarity=0.193  Sum_probs=246.9

Q ss_pred             hhcHHHHHHHhhc-cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chh
Q 041252          148 QGRASELLGTLKK-VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SES  225 (450)
Q Consensus       148 ~~~i~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~  225 (450)
                      .|.++.|+..|+. .+.+.+..|+++|.+++..+++++..+++.|+||.|+.+|.+. +..+++.|+++|.||+.+ +++
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~-~~~v~e~A~~aL~nLa~~~~~~  196 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGAGSAF  196 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhccCHHH
Confidence            4789999999975 4578999999999999998889999999999999999999886 789999999999999875 578


Q ss_pred             hhhccCCCchHHHHHHhcCCC-----HHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHH
Q 041252          226 KTNLMQPAKVSLLVDMLNEGS-----VETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL  300 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~~-----~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL  300 (450)
                      +..+.+.|++++|+.+|...+     ...+.+++++|.+++........+....++++.|++++.++ ++.++..++++|
T Consensus       197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL  275 (529)
T 3tpo_A          197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAI  275 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHHHH
Confidence            889999999999999997543     45788999999999877655555556678999999999986 688999999999


Q ss_pred             HHhccChH-HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHH
Q 041252          301 RSICLLNE-VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQY  378 (450)
Q Consensus       301 ~~Ls~~~~-~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~  378 (450)
                      .+|+.+.. ....+++.|+++.|+++|.+.+..++..|+.+|.+++.. ++.+..+.+ .|+++.|+++|.+.++.+++.
T Consensus       276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~i~~~  354 (529)
T 3tpo_A          276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKE  354 (529)
T ss_dssp             HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHHHH
T ss_pred             HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh-cccHHHHHHHHcCCCHHHHHH
Confidence            99996554 556677899999999999999999999999999999865 677778888 899999999999999999999


Q ss_pred             HHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          379 ALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       379 A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      |+++|.+++..++ .....+++.|+++.|+.++.++ +..+++.|+++|.++..+
T Consensus       355 a~~aL~nl~~~~~-~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~  407 (529)
T 3tpo_A          355 ATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSG  407 (529)
T ss_dssp             HHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccH-HHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcC
Confidence            9999999999876 4456677899999999999998 788899999999888765

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=5.8e-27  Score=252.76  Aligned_cols=281  Identities=11%  Similarity=0.081  Sum_probs=244.5

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      |.++.|+.+|+++++.+|..|+++|.+++. ++++|..+++.|++|+|+.+|.+. +...++.|+++|.+|+.+.+....
T Consensus       495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~  572 (810)
T 3now_A          495 GITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVS  572 (810)
T ss_dssp             THHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             cCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhh
Confidence            678999999999999999999999999985 677999999999999999999875 678899999999998865433332


Q ss_pred             cc---CCCchHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          229 LM---QPAKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       229 i~---~~g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                      +.   ..|++++|+.+|.++ +...+..|+++|.+|+..++.....+.+.|+++.|+.++.++ ++.++++|+++|.||+
T Consensus       573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa  651 (810)
T 3now_A          573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLV  651 (810)
T ss_dssp             TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHT
T ss_pred             hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence            21   146999999999876 555667899999999987665565667789999999999986 6889999999999999


Q ss_pred             cChHHHHHHHh-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHH
Q 041252          305 LLNEVRSLVVS-IGAVPQLVELLPSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSI  382 (450)
Q Consensus       305 ~~~~~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~  382 (450)
                      .+++.+..+++ .|+++.|+.++.+.+.++++.|+++|.+|+. ++.....+.+++|+|+.|++++.+.+..+++.|+.+
T Consensus       652 ~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a  731 (810)
T 3now_A          652 MSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI  731 (810)
T ss_dssp             TSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             CChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence            99999999996 7999999999999999999999999999998 688888888757999999999999999999999999


Q ss_pred             HHHhcccCchhHHHHHHhcChHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhh
Q 041252          383 LWSICKIAPEECSSAAVDAGLAAKLFLVIQSG--CNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       383 L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~--~~~~~k~~A~~lL~~ls~~  433 (450)
                      |.|++..++ +.+..+++.|++++|+.+++..  .+..+.+.|...|+.+-..
T Consensus       732 L~NL~~~s~-e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~  783 (810)
T 3now_A          732 ILNMINAGE-EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY  783 (810)
T ss_dssp             HHHHHTTCH-HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCH-HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence            999998665 5567888999999999998654  3678999999999987665

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.95  E-value=2.7e-26  Score=240.62  Aligned_cols=282  Identities=16%  Similarity=0.160  Sum_probs=247.4

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC----ChhhHHHHHHHHHhcCCCc
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT----SHAVGSEAVGVLVNLTLDS  223 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~----~~~v~~~Al~~L~~Ls~~~  223 (450)
                      .|.++.|+.+|.+.+.+++..|+++|.+++.+++.+|..+.+.|++++|+.+|....    .......++++|.+++.+.
T Consensus       161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  240 (529)
T 3tpo_A          161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  240 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence            477999999999999999999999999999999999999999999999999997642    2246788999999998876


Q ss_pred             hhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHH
Q 041252          224 ESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRS  302 (450)
Q Consensus       224 ~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~  302 (450)
                      .....+. ..++++.|+.+|.+++++++..|+++|.+|+..++.+...+...|+++.|+.+|.+. ++.++..++++|.|
T Consensus       241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~n  319 (529)
T 3tpo_A          241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGN  319 (529)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHHH
Confidence            5554443 478999999999999999999999999999987777777778889999999999986 68889999999999


Q ss_pred             hcc-ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHH
Q 041252          303 ICL-LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYAL  380 (450)
Q Consensus       303 Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~  380 (450)
                      |+. ++..+..+++.|+++.|+.+|.++++.+++.|+++|.||+.. ++.+..+.+ .|++|.|+.++.+.+..+++.|+
T Consensus       320 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~A~  398 (529)
T 3tpo_A          320 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKAAA  398 (529)
T ss_dssp             HTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHh-cCcHHHHHHHhcCCCHHHHHHHH
Confidence            984 567888899999999999999999999999999999999975 666777777 89999999999999999999999


Q ss_pred             HHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252          381 SILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL  432 (450)
Q Consensus       381 ~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~  432 (450)
                      ++|.+++.....+....+++.|++++|+.+|.+. ++.+...+...|.++-.
T Consensus       399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~  449 (529)
T 3tpo_A          399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQ  449 (529)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            9999999876555556788999999999999987 78888888887777543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=3.7e-26  Score=215.54  Aligned_cols=237  Identities=21%  Similarity=0.241  Sum_probs=215.4

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cchhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSESKT  227 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~k~  227 (450)
                      ...+.++..|++.+.+.+..|+..|+++...+..++..+.+.|+++.|+.+|++. +..++..|+++|.+++. +++++.
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHH
Confidence            4578899999999999999999999887766788999999999999999999886 68999999999999997 678899


Q ss_pred             hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-C
Q 041252          228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-L  306 (450)
Q Consensus       228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~  306 (450)
                      .+.+.|+++.|+.+|++++++++..|+++|.+|+..++.+...+...|+++.|+++|.++ ++.++..++++|.+|+. .
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999887766546677889999999999886 68899999999999996 5


Q ss_pred             hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 041252          307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWS  385 (450)
Q Consensus       307 ~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  385 (450)
                      ++++..+++.|+++.|+++|.++++.+++.|+++|.+|+. +++.+..+.+ .|+++.|++++.+.++.+++.|+.+|.+
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            6778888899999999999999999999999999999995 5778888888 8999999999999999999999999999


Q ss_pred             hcc
Q 041252          386 ICK  388 (450)
Q Consensus       386 L~~  388 (450)
                      |+.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            975

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.95  E-value=3.4e-26  Score=238.82  Aligned_cols=282  Identities=16%  Similarity=0.153  Sum_probs=246.4

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC----ChhhHHHHHHHHHhcCCCc
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT----SHAVGSEAVGVLVNLTLDS  223 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~----~~~v~~~Al~~L~~Ls~~~  223 (450)
                      .|.++.|+..|++++.+++..|+++|.+++.+++.+|..+.+.|++++|+.+|....    .......++++|.+++.+.
T Consensus       142 ~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  221 (510)
T 3ul1_B          142 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  221 (510)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence            377999999999999999999999999999988999999999999999999997642    1246778999999998876


Q ss_pred             hhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHH
Q 041252          224 ESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRS  302 (450)
Q Consensus       224 ~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~  302 (450)
                      .....+. ..++++.|+.+|.+++.+++..|+++|.+|+..++.+...+...|+++.|+.+|.+. +..++..++++|.|
T Consensus       222 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~n  300 (510)
T 3ul1_B          222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGN  300 (510)
T ss_dssp             SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHHH
Confidence            5554443 478899999999999999999999999999987776777778889999999999986 68899999999999


Q ss_pred             hc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHH
Q 041252          303 IC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYAL  380 (450)
Q Consensus       303 Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~  380 (450)
                      |+ .++.++..+++.|+++.|+.+|.+.+..+++.|+++|.||+.. ++.+..+.+ .|++|.|++++.+.+..+++.|+
T Consensus       301 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~Aa  379 (510)
T 3ul1_B          301 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKEAA  379 (510)
T ss_dssp             HTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             hhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHH
Confidence            98 4567788899999999999999999999999999999999865 667777777 89999999999999999999999


Q ss_pred             HHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252          381 SILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL  432 (450)
Q Consensus       381 ~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~  432 (450)
                      ++|.+++.....+....+++.|+++.|+.+|.+. ++.+...+...|.++-.
T Consensus       380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~  430 (510)
T 3ul1_B          380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQ  430 (510)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            9999999876555566778999999999999987 78888888887776543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=6.3e-26  Score=213.00  Aligned_cols=240  Identities=23%  Similarity=0.261  Sum_probs=219.8

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhhhh
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESKTN  228 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k~~  228 (450)
                      .++.|+..|++.+.+.+..|+..|.+++..+++++..+.+.|+++.|+.+|.+. +..++..|+++|.+++.+ ++++..
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHH
Confidence            478899999998899999999999999998888999999999999999999886 689999999999999987 788999


Q ss_pred             ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-Ch
Q 041252          229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LN  307 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~  307 (450)
                      +.+.|+++.|+.+|.+++.+++..|+++|.+|+..++.....+...|+++.|+++++++ ++.++..++++|.+|+. ++
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999999966666666677789999999999986 68899999999999996 56


Q ss_pred             HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252          308 EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI  386 (450)
Q Consensus       308 ~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  386 (450)
                      .++..+++.|+++.|+.+|.+.++.++..|+++|.+|+. .++.+..+.+ .|+++.|++++.+.++.+++.|+.+|.++
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  239 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRALENI  239 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            667889999999999999999999999999999999997 4777888888 89999999999999999999999999999


Q ss_pred             cccCch
Q 041252          387 CKIAPE  392 (450)
Q Consensus       387 ~~~~~~  392 (450)
                      +...+.
T Consensus       240 ~~~~~~  245 (252)
T 4hxt_A          240 KSGGWL  245 (252)
T ss_dssp             HHTCBC
T ss_pred             HcCCCc
Confidence            987653

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=3.7e-25  Score=207.75  Aligned_cols=241  Identities=20%  Similarity=0.185  Sum_probs=217.4

Q ss_pred             CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhh
Q 041252          191 GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPE  269 (450)
Q Consensus       191 G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~  269 (450)
                      |+++.|+.+|.+. +.+++..|+.+|.+++..+ +++..+++.|+++.|+.+|.+++.+++..|+++|.+|+..++....
T Consensus         2 ~~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            6799999999886 6889999999999988765 5888999999999999999999999999999999999987666667


Q ss_pred             HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-
Q 041252          270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-  347 (450)
Q Consensus       270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-  347 (450)
                      .+...|+++.|+.+++++ ++.++..++++|.+|+ .+++++..+++.|+++.|+++|.+.++.++..|+++|.+|+.. 
T Consensus        81 ~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            777889999999999986 6889999999999999 6788999999999999999999999999999999999999975 


Q ss_pred             hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHH
Q 041252          348 PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELL  427 (450)
Q Consensus       348 ~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL  427 (450)
                      ++.+..+.+ .|+++.|++++.+.++.+++.|+.+|.+++..++ .....+.+.|+++.|+.+++++ ++.+++.|..+|
T Consensus       160 ~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L  236 (252)
T 4hxt_A          160 DEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPT-SAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRAL  236 (252)
T ss_dssp             HHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH-HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHH
Confidence            666677887 8999999999999999999999999999998665 4456778999999999999987 789999999999


Q ss_pred             HHHHhhcCC
Q 041252          428 KLCSLNYTD  436 (450)
Q Consensus       428 ~~ls~~~~~  436 (450)
                      .++..+...
T Consensus       237 ~~l~~~~~~  245 (252)
T 4hxt_A          237 ENIKSGGWL  245 (252)
T ss_dssp             HHHHHTCBC
T ss_pred             HHHHcCCCc
Confidence            999988543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.94  E-value=2.6e-25  Score=232.61  Aligned_cols=282  Identities=16%  Similarity=0.182  Sum_probs=246.2

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcH-HHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhhh
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHA-SARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESKT  227 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k~  227 (450)
                      .++.++..|.+.+.+.+..|+..|++++..+. .++..+.+.|++|.|+.+|.+..+..++..|+++|.+++.+ ++++.
T Consensus        75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  154 (528)
T 4b8j_A           75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK  154 (528)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            48899999999889999999999999976543 57888999999999999998764478999999999999886 68888


Q ss_pred             hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252          228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN  307 (450)
Q Consensus       228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~  307 (450)
                      .+++.|+++.|+.+|.+++.++++.|+++|.+|+.+++.....+...|+++.|+.+|....++.++..++++|.+|+...
T Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~  234 (528)
T 4b8j_A          155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK  234 (528)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred             HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999987766666667778999999999954447888999999999999765


Q ss_pred             HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhH-HHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252          308 EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGK-LALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI  386 (450)
Q Consensus       308 ~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r-~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  386 (450)
                      .........|+++.|+.+|.+.+..++..|+++|.+|+..+..+ ..+.+ .|+++.|+++|.+.++.+++.|+.+|.++
T Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl  313 (528)
T 4b8j_A          235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLLHPSPSVLIPALRTVGNI  313 (528)
T ss_dssp             SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence            44445556899999999999999999999999999999875554 56666 89999999999999999999999999999


Q ss_pred             cccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          387 CKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       387 ~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      +..++ .....+++.|+++.|+.++.++.++.+++.|..+|.+++..
T Consensus       314 ~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~  359 (528)
T 4b8j_A          314 VTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG  359 (528)
T ss_dssp             TTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred             HcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence            98775 44566778999999999999875788999999999998764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.94  E-value=1.4e-24  Score=227.15  Aligned_cols=280  Identities=20%  Similarity=0.221  Sum_probs=246.5

Q ss_pred             hhcHHHHHHHhhccc-hHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chh
Q 041252          148 QGRASELLGTLKKVK-GQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SES  225 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~-~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~  225 (450)
                      .+.++.|+..|++.+ ..++..|+++|.+++..+++++..+++.|+++.|+.+|.+. +..+++.|+++|.+|+.+ +.+
T Consensus       116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhh
Confidence            367999999999876 88999999999999988889999999999999999999885 789999999999999876 467


Q ss_pred             hhhccCCCchHHHHHHh-cCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          226 KTNLMQPAKVSLLVDML-NEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL-~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                      +..+.+.|+++.|+.+| .+.+..++..|+++|.+|+...+.... ....++++.|+.+|.+. ++.++..++++|.+|+
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF-EQTRPALPALARLIHSN-DEEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH-HHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence            88888999999999999 567999999999999999876533332 34578999999999886 6889999999999999


Q ss_pred             cChHH-HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHH
Q 041252          305 LLNEV-RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALS  381 (450)
Q Consensus       305 ~~~~~-~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~  381 (450)
                      ..... ...+++.|+++.|+.+|.+.++.++..|+.+|.+|+.. +..+..+.+ .|+++.|+++|.+. ++.+++.|++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~  351 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACW  351 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHH
Confidence            76554 46777899999999999999999999999999999975 667777887 89999999999998 8999999999


Q ss_pred             HHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          382 ILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       382 ~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      +|.+++..++ .....+++.|+++.|+.++.++ ++.+++.|..+|..+..+
T Consensus       352 ~L~nl~~~~~-~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          352 TISNITAGNK-DQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHHHTSCH-HHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCH-HHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence            9999998664 4455677889999999999998 789999999999998876

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.93  E-value=4.9e-24  Score=223.23  Aligned_cols=281  Identities=19%  Similarity=0.167  Sum_probs=247.2

Q ss_pred             hhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chh
Q 041252          148 QGRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SES  225 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~  225 (450)
                      .+.++.|+..|++. +..+|..|++.|.+++..+++++..+++.|+++.|+.+|.+. +..+++.|+++|.+++.+ +++
T Consensus       129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccc
Confidence            36789999999886 788999999999999988888999999999999999999875 789999999999999876 578


Q ss_pred             hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252          226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL  305 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~  305 (450)
                      +..+...|+++.|+.+|.+.+.+++..|+++|.+|+.............++++.|+.++.++ ++.++..++++|.+|+.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            88888899999999999999999999999999999876522223345578999999999886 68889999999999995


Q ss_pred             C-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252          306 L-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL  383 (450)
Q Consensus       306 ~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  383 (450)
                      . ++.+..+++.|+++.|+.+|.+.+..++..|+.+|.+++.. ++....+.+ .|+++.|+.+|.+.+..+++.|+.+|
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~vr~~A~~aL  365 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIKKEACWTI  365 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            4 56778888999999999999999999999999999999965 666777777 79999999999999999999999999


Q ss_pred             HHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          384 WSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       384 ~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      .+++..+++ ..+.+++.|+++.|+.++.++ ++.+++.|..+|..+...
T Consensus       366 ~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          366 SNITAGNTE-QIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSG  413 (530)
T ss_dssp             HHHTTSCHH-HHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHH-HHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence            999987753 345667899999999999887 789999999999998776

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.93  E-value=1e-23  Score=215.02  Aligned_cols=282  Identities=15%  Similarity=0.102  Sum_probs=243.4

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc--hh
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS--ES  225 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~--~~  225 (450)
                      .+.++.|+..|++.+.++|..|+..|.+++..++.+|..+.+.|+++.|+.+|.+..+..++..|+++|.+++.+.  ..
T Consensus       106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~  185 (450)
T 2jdq_A          106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP  185 (450)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            3678899999999889999999999999999888899999999999999999986447899999999999998754  33


Q ss_pred             hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252          226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL  305 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~  305 (450)
                      +..+. .++++.|+.+|.+++.+++..++++|.+|+...+.....+...|+++.|+.++.++ ++.++..++++|.+|+.
T Consensus       186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~  263 (450)
T 2jdq_A          186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-DYKVVSPALRAVGNIVT  263 (450)
T ss_dssp             CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred             CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC-chhHHHHHHHHHHHHhh
Confidence            33333 89999999999999999999999999999876544555566778999999999875 68899999999999996


Q ss_pred             C-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252          306 L-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL  383 (450)
Q Consensus       306 ~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  383 (450)
                      . +..+..+++.|+++.|+.+|.+.++.++..|+++|.+++. +++....+.+ .|+++.|+++|.+.++.+++.|+.+|
T Consensus       264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L  342 (450)
T 2jdq_A          264 GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID-ANIFPALISILQTAEFRTRKEAAWAI  342 (450)
T ss_dssp             SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence            5 4456667889999999999999999999999999999996 5777778887 79999999999999999999999999


Q ss_pred             HHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          384 WSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       384 ~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      .+++.....+..+.+++.|+++.|+.++.++ ++.+++.|...|..+...
T Consensus       343 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~  391 (450)
T 2jdq_A          343 TNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRL  391 (450)
T ss_dssp             HHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence            9999863334455567889999999999987 788999999988877665

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.93  E-value=2.4e-24  Score=224.49  Aligned_cols=282  Identities=17%  Similarity=0.168  Sum_probs=240.4

Q ss_pred             hcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhh
Q 041252          149 GRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESK  226 (450)
Q Consensus       149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k  226 (450)
                      +.++.|+..|+++ +.+.+..|+..|++++.. ++++..+.+.|+++.|+.+|++. +..++..|+++|.+++.+ ++.+
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~  136 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchH
Confidence            6788999999765 778999999999999865 55999999999999999999886 688999999999999876 4667


Q ss_pred             hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252          227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL  306 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~  306 (450)
                      ..+.+.|+++.|+.+|.+++.+++..++.+|.+|+..++..+..+...|+++.|++++++.........+..+|++|+.+
T Consensus       137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  216 (529)
T 1jdh_A          137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  216 (529)
T ss_dssp             HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence            78889999999999999999999999999999998876666666777799999999999875455667889999999999


Q ss_pred             hHHHHHHHhcCCHHHHHHhcCC---------------------------------------CChhHHHHHHHHHHHhcCC
Q 041252          307 NEVRSLVVSIGAVPQLVELLPS---------------------------------------LDPDCLQLALCILDALSSL  347 (450)
Q Consensus       307 ~~~~~~iv~~G~v~~Lv~lL~~---------------------------------------~~~~~~~~al~~L~~L~~~  347 (450)
                      ++++..+++.|+++.|+.++.+                                       .++++++.|+++|.+|+..
T Consensus       217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~  296 (529)
T 1jdh_A          217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  296 (529)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            9999999999988777766644                                       4567777888888888765


Q ss_pred             -hhhHHHHhccCCChHHHHHHHhcCC--hHHHHHHHHHHHHhcccCchh--HHHHHHhcChHHHHHHHHHcCCCHHHHHH
Q 041252          348 -PEGKLALKDCANTIPNTVRLLMRVS--EDCTQYALSILWSICKIAPEE--CSSAAVDAGLAAKLFLVIQSGCNPVLKQR  422 (450)
Q Consensus       348 -~e~r~~i~~~~g~i~~Lv~lL~~~s--~~~~e~A~~~L~~L~~~~~~~--~~~~~~~~G~i~~L~~ll~s~~~~~~k~~  422 (450)
                       ++++..+.+ .|+++.|+++|.+.+  +.+++.|+.+|++++..+++.  .+..+.+.|+++.|+.+++++..+.+++.
T Consensus       297 ~~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~  375 (529)
T 1jdh_A          297 NYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA  375 (529)
T ss_dssp             CHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred             CHHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHH
Confidence             578888888 899999999998743  689999999999999876532  45567789999999999998855688999


Q ss_pred             HHHHHHHHHhh
Q 041252          423 SAELLKLCSLN  433 (450)
Q Consensus       423 A~~lL~~ls~~  433 (450)
                      |.++|.+++.+
T Consensus       376 a~~~l~nl~~~  386 (529)
T 1jdh_A          376 TVGLIRNLALC  386 (529)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHhcC
Confidence            99999998865

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=8.7e-25  Score=206.08  Aligned_cols=237  Identities=22%  Similarity=0.210  Sum_probs=211.2

Q ss_pred             CChHHHHhhhCCCCChhhHHHHHHHHHh-cCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhh
Q 041252          191 GGVALISSLLGPFTSHAVGSEAVGVLVN-LTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPE  269 (450)
Q Consensus       191 G~i~~Lv~lL~~~~~~~v~~~Al~~L~~-Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~  269 (450)
                      ...+.++..|.+. +.+++..|+.+|.+ ++.+++++..+++.|+++.|+.+|.+++++++..|+++|.+|+..++....
T Consensus        12 ~~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            3478899999886 78999999999976 555678888999999999999999999999999999999999986666667


Q ss_pred             HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHH-HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-
Q 041252          270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR-SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-  347 (450)
Q Consensus       270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~-~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-  347 (450)
                      .+...|+++.|+.+|+++ ++.++..++++|.+|+.+++++ ..+++.|+++.|+.+|.+++..+++.|+++|.+|+.. 
T Consensus        91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            778889999999999986 6889999999999999988888 8899999999999999999999999999999999975 


Q ss_pred             hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHH
Q 041252          348 PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELL  427 (450)
Q Consensus       348 ~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL  427 (450)
                      ++.+..+.+ .|+++.|+++|.+.++.+++.|+.+|.+++..++ +....+.+.|+++.|+.+++++ ++.+++.|..+|
T Consensus       170 ~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L  246 (252)
T 4db8_A          170 NEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEAL  246 (252)
T ss_dssp             HHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHH
T ss_pred             hHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            677777887 8999999999999999999999999999998765 4456778999999999999987 778999999999


Q ss_pred             HHHHh
Q 041252          428 KLCSL  432 (450)
Q Consensus       428 ~~ls~  432 (450)
                      .++..
T Consensus       247 ~~l~~  251 (252)
T 4db8_A          247 EKLQS  251 (252)
T ss_dssp             HTTC-
T ss_pred             HHHhc
Confidence            88754

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.93  E-value=2.7e-23  Score=211.93  Aligned_cols=279  Identities=16%  Similarity=0.142  Sum_probs=242.5

Q ss_pred             hcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhh
Q 041252          149 GRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESK  226 (450)
Q Consensus       149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k  226 (450)
                      +.++.|+..|++. +...|..|+..|.+++..+++++..+.+.|+++.|+.+|++. +..+++.|+++|.+++.+. +++
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~~~~~  142 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDSTMCR  142 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCCHHHH
Confidence            6788999999987 788999999999999987777888889999999999999885 7899999999999998865 678


Q ss_pred             hhccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          227 TNLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                      ..+.+.|+++.|+.+|.+ .+.+++..|+++|.+|+... ....... ..++++.|+.++.++ ++.++..++++|.+|+
T Consensus       143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~  220 (450)
T 2jdq_A          143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVS-DTDVLADACWALSYLS  220 (450)
T ss_dssp             HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence            888899999999999996 68999999999999998654 3222222 278899999999876 6788999999999999


Q ss_pred             cC-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHH
Q 041252          305 LL-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSI  382 (450)
Q Consensus       305 ~~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~  382 (450)
                      .+ ++++..+++.|+++.|+.+|.+.+..+++.|+.+|.+|+.. ++.+..+.+ .|+++.|+++|.+.++.+++.|+.+
T Consensus       221 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          221 DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             SSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCCCHHHHHHHHHH
Confidence            64 56778888999999999999999999999999999999977 455566777 7999999999999889999999999


Q ss_pred             HHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          383 LWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       383 L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      |.+++..++ ...+.+++.|+++.|+.++.++ ++.+|+.|..+|..+...
T Consensus       300 L~~l~~~~~-~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          300 ISNITAGNR-AQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             HHHHTTSCH-HHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence            999998765 3345677889999999999987 788999999999988765

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.92  E-value=6.1e-25  Score=204.55  Aligned_cols=196  Identities=18%  Similarity=0.184  Sum_probs=173.5

Q ss_pred             ChHHHHhhhCCCCCh--hhHHHHHHHHHhcCC-CchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChh
Q 041252          192 GVALISSLLGPFTSH--AVGSEAVGVLVNLTL-DSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRP  268 (450)
Q Consensus       192 ~i~~Lv~lL~~~~~~--~v~~~Al~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~  268 (450)
                      .+|.++.+|.+. +.  .++..|+++|.+|+. ++++|..+.+.|+|++||.+|++++.++++.|+++|++|+..++.++
T Consensus         9 ~i~~lV~lL~s~-~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEAD-HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCC-CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            489999999876 55  788899999999985 67899999999999999999999999999999999999998766777


Q ss_pred             hHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcC----------------CCChh
Q 041252          269 EIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLP----------------SLDPD  332 (450)
Q Consensus       269 ~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~----------------~~~~~  332 (450)
                      ..+.+.|+++.|+++|++..+..+++.++.+||||+.++++|..+++. ++++|++++.                ..+.+
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence            788889999999999986446889999999999999999999999975 6999999873                12568


Q ss_pred             HHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcC------ChHHHHHHHHHHHHhccc
Q 041252          333 CLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRV------SEDCTQYALSILWSICKI  389 (450)
Q Consensus       333 ~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~------s~~~~e~A~~~L~~L~~~  389 (450)
                      ++++|..+|+||+. ++++|..++++.|+|+.||.++...      +.+.+|+|+.+|+||+.+
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999987 4799999998678899999999863      468999999999999875

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=1.9e-23  Score=218.70  Aligned_cols=282  Identities=17%  Similarity=0.126  Sum_probs=245.8

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhh
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESK  226 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k  226 (450)
                      .+.++.|+..|++.+.+++..|+++|.+++..++.++..+.+.|+++.|+.+|.+. +..++..|+++|.+|+.+. ...
T Consensus       172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~  250 (530)
T 1wa5_B          172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQP  250 (530)
T ss_dssp             TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCC
Confidence            36788999999998899999999999999988888999999999999999999874 7889999999999999765 455


Q ss_pred             hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-
Q 041252          227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-  305 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-  305 (450)
                      ......++++.|+.+|.+++.+++..|+++|.+|+...+.....+...|+++.|+.+|.+. ++.++..++++|.+|+. 
T Consensus       251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~  329 (530)
T 1wa5_B          251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTG  329 (530)
T ss_dssp             CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHHHHHHcC
Confidence            5555689999999999999999999999999999876554455566678999999999876 68889999999999995 


Q ss_pred             ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252          306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW  384 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~  384 (450)
                      ++.....+.+.|+++.|+.+|.+++..++..|+++|.+|+. +++....+.+ .|+++.|+++|...+..+++.|+.+|.
T Consensus       330 ~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~  408 (530)
T 1wa5_B          330 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID-ANLIPPLVKLLEVAEYKTKKEACWAIS  408 (530)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            46667778889999999999999999999999999999996 4677777777 799999999999999999999999999


Q ss_pred             HhcccCch--hHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          385 SICKIAPE--ECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       385 ~L~~~~~~--~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      +++.....  +....+++.|+++.|+.++.++ ++.++..|..+|..+...
T Consensus       409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~al~aL~~l~~~  458 (530)
T 1wa5_B          409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA-DNRIIEVTLDALENILKM  458 (530)
T ss_dssp             HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            99886543  3455677899999999999887 788999999888876654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.92  E-value=1.1e-23  Score=219.47  Aligned_cols=283  Identities=15%  Similarity=0.117  Sum_probs=240.1

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHh-hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVD-EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK  226 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k  226 (450)
                      .+.++.|+..|++.+..+|..|+..|.+++..+ .++..+.. .|+++.|+++|.+..+..++..|+.+|.+|+.+++++
T Consensus        16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~   94 (529)
T 1jdh_A           16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence            467899999999989999999999999999654 57776665 4899999999975446789999999999999999999


Q ss_pred             hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-
Q 041252          227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-  305 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-  305 (450)
                      ..+.+.|+++.|+.+|++++++++..|+++|.+|+..++.....+...|+++.|++++.++ ++.++..++.+|.+++. 
T Consensus        95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~~~~L~~la~~  173 (529)
T 1jdh_A           95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999987666677777889999999999986 67788889999999995 


Q ss_pred             ChHHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh---------------
Q 041252          306 LNEVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM---------------  369 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~---------------  369 (450)
                      +++++..+++.|+++.|+.+|+++ +...++.++.+|.+|+.+++++..+.+ .|+++.|++++.               
T Consensus       174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~a~~~L~  252 (529)
T 1jdh_A          174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLR  252 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence            688999999999999999999765 456778889999999999999999887 677766665554               


Q ss_pred             ------------------------cCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc-CCCHHHHHHHH
Q 041252          370 ------------------------RVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS-GCNPVLKQRSA  424 (450)
Q Consensus       370 ------------------------~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s-~~~~~~k~~A~  424 (450)
                                              +.++.+++.|+++|++++..++ +.+..+.+.|+++.|+.++.+ +..+.+++.|.
T Consensus       253 ~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~  331 (529)
T 1jdh_A          253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAI  331 (529)
T ss_dssp             HHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH-HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHH
Confidence                                    4456777788888888877664 345667789999999999976 33478999999


Q ss_pred             HHHHHHHhhc
Q 041252          425 ELLKLCSLNY  434 (450)
Q Consensus       425 ~lL~~ls~~~  434 (450)
                      .+|.+++.+.
T Consensus       332 ~~L~nl~~~~  341 (529)
T 1jdh_A          332 CALRHLTSRH  341 (529)
T ss_dssp             HHHHHHTSSS
T ss_pred             HHHHHHHcCC
Confidence            9999987653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.92  E-value=9.3e-24  Score=226.44  Aligned_cols=282  Identities=15%  Similarity=0.118  Sum_probs=241.1

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhh-CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDE-GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK  226 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~-G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k  226 (450)
                      .+.++.|+..|++.+..+|..|+..|.+++..+ .++..+... |+++.|+++|.+..+.+++..|+.+|.+|+.+++++
T Consensus        13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~   91 (644)
T 2z6h_A           13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   91 (644)
T ss_dssp             TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence            467999999999988999999999999999765 477777654 889999999986547789999999999999999999


Q ss_pred             hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-
Q 041252          227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-  305 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-  305 (450)
                      ..+.+.|+++.|+.+|+++++.++..|+.+|.+|+..++.....+...|+++.|+++|+++ ++.++..++.+|.+|+. 
T Consensus        92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~  170 (644)
T 2z6h_A           92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYG  170 (644)
T ss_dssp             HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999987766666777889999999999986 56777788889999995 


Q ss_pred             ChHHHHHHHhcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhc--------------
Q 041252          306 LNEVRSLVVSIGAVPQLVELLPSLD-PDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMR--------------  370 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~~~~-~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~--------------  370 (450)
                      +++++..+++.|+++.|+.+|++.+ ..+++.++.+|.+|+.+++++..+++ .|+++.|++++..              
T Consensus       171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~~~a~~~L~  249 (644)
T 2z6h_A          171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLR  249 (644)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH-TTHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            7899999999999999999998764 67889999999999999999999988 7887777665544              


Q ss_pred             -------------------------CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCC-CHHHHHHHH
Q 041252          371 -------------------------VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGC-NPVLKQRSA  424 (450)
Q Consensus       371 -------------------------~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~-~~~~k~~A~  424 (450)
                                               .++.+++.|+++|++|+..++ +.+..+.+.|+++.|+.++.+.. .+.++..|.
T Consensus       250 nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~  328 (644)
T 2z6h_A          250 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAI  328 (644)
T ss_dssp             HHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHH
Confidence                                     455667777777777776554 34566778999999999998742 378999999


Q ss_pred             HHHHHHHhh
Q 041252          425 ELLKLCSLN  433 (450)
Q Consensus       425 ~lL~~ls~~  433 (450)
                      .+|.+++.+
T Consensus       329 ~aL~nL~~~  337 (644)
T 2z6h_A          329 CALRHLTSR  337 (644)
T ss_dssp             HHHHHHTSS
T ss_pred             HHHHHHhcC
Confidence            999998754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.92  E-value=1.2e-23  Score=225.67  Aligned_cols=282  Identities=17%  Similarity=0.168  Sum_probs=239.7

Q ss_pred             hcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhh
Q 041252          149 GRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESK  226 (450)
Q Consensus       149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k  226 (450)
                      +.++.|+..|+++ +.+.+..|+..|++++.. .+++..+.+.|+++.|+.+|++. +..++..|+.+|.+|+.+ +..+
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~  133 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAK  133 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhH
Confidence            6688899999875 678999999999999865 55999999999999999999886 789999999999999876 4667


Q ss_pred             hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252          227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL  306 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~  306 (450)
                      ..+.+.|+++.|+.+|.+++.+++..++.+|.+|+..++..+..+.+.|+++.|++++++......+..++.+|++|+.+
T Consensus       134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~  213 (644)
T 2z6h_A          134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  213 (644)
T ss_dssp             HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence            77888999999999999999999999999999999766566666777899999999998864456678899999999999


Q ss_pred             hHHHHHHHhcCCHHHHHHhcCC---------------------------------------CChhHHHHHHHHHHHhcCC
Q 041252          307 NEVRSLVVSIGAVPQLVELLPS---------------------------------------LDPDCLQLALCILDALSSL  347 (450)
Q Consensus       307 ~~~~~~iv~~G~v~~Lv~lL~~---------------------------------------~~~~~~~~al~~L~~L~~~  347 (450)
                      ++++..+++.|+++.|+.++.+                                       .+.++++.|+++|.+|+..
T Consensus       214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~  293 (644)
T 2z6h_A          214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  293 (644)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999988888776644                                       4566777788888888765


Q ss_pred             -hhhHHHHhccCCChHHHHHHHhcCC--hHHHHHHHHHHHHhcccCchh--HHHHHHhcChHHHHHHHHHcCCCHHHHHH
Q 041252          348 -PEGKLALKDCANTIPNTVRLLMRVS--EDCTQYALSILWSICKIAPEE--CSSAAVDAGLAAKLFLVIQSGCNPVLKQR  422 (450)
Q Consensus       348 -~e~r~~i~~~~g~i~~Lv~lL~~~s--~~~~e~A~~~L~~L~~~~~~~--~~~~~~~~G~i~~L~~ll~s~~~~~~k~~  422 (450)
                       ++++..+.+ .|+++.|+++|.+.+  +.+++.|+.+|.+|+...++.  .+..+.+.|+++.|+.+|.++.++.+++.
T Consensus       294 ~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~  372 (644)
T 2z6h_A          294 NYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA  372 (644)
T ss_dssp             CHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHH
T ss_pred             CHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHH
Confidence             577888888 899999999998754  699999999999999865432  34446789999999999998756788999


Q ss_pred             HHHHHHHHHhh
Q 041252          423 SAELLKLCSLN  433 (450)
Q Consensus       423 A~~lL~~ls~~  433 (450)
                      |..+|.+++.+
T Consensus       373 a~~~L~nLa~~  383 (644)
T 2z6h_A          373 TVGLIRNLALC  383 (644)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHccC
Confidence            99999998765

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.91  E-value=4.9e-24  Score=198.46  Aligned_cols=196  Identities=19%  Similarity=0.209  Sum_probs=169.8

Q ss_pred             hcHHHHHHHhhccch--HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cchh
Q 041252          149 GRASELLGTLKKVKG--QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSES  225 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~--~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~  225 (450)
                      -.++.++..|++++.  +.+..|+.+|++++..++.+|..|++.|+||+|+++|++. +.++++.|+++|.||+. ++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHH
Confidence            458899999999887  8889999999999999999999999999999999999885 78999999999999998 5799


Q ss_pred             hhhccCCCchHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh---cC------------CC
Q 041252          226 KTNLMQPAKVSLLVDMLN-EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK---NK------------RH  289 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~---~~------------~~  289 (450)
                      |..|++.|+|+.|+++|. +++.+++++|+.+|++|+..++.+..++ + +++++|+.++.   ++            .+
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~-~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMI-T-EALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHH-H-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHH-h-ccHHHHHHHHhccccCCcccccccccccch
Confidence            999999999999999998 5799999999999999987766555544 4 46999998653   11            13


Q ss_pred             ccchhHHHHHHHHhcc-ChHHHHHHHhc-CCHHHHHHhcCC------CChhHHHHHHHHHHHhcCC
Q 041252          290 PNGILPGLSLLRSICL-LNEVRSLVVSI-GAVPQLVELLPS------LDPDCLQLALCILDALSSL  347 (450)
Q Consensus       290 ~~~~~~al~aL~~Ls~-~~~~~~~iv~~-G~v~~Lv~lL~~------~~~~~~~~al~~L~~L~~~  347 (450)
                      +.++.+|.++|+||+. ++++|..|++. |+|+.|+.+++.      .+...+|+|+.+|+||+..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            4678899999999996 66999999986 778999999954      2568999999999999854

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.90  E-value=2.4e-22  Score=219.86  Aligned_cols=280  Identities=15%  Similarity=0.132  Sum_probs=239.4

Q ss_pred             hcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhh
Q 041252          149 GRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESK  226 (450)
Q Consensus       149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k  226 (450)
                      +.++.|+..|++. +.+.|..|+..|++++.. .+++..+.+.|+|+.|+.+|++. +..++..|+++|.+|+.+ ++.+
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~  269 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAK  269 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhH
Confidence            5678888888765 788999999999998864 56899999999999999999886 788999999999999876 4667


Q ss_pred             hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252          227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL  306 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~  306 (450)
                      ..+++.|+++.|+.+|.+++..++..++.+|.+|+..++..+..+...|+++.|+.++++.........++.+|++|+.+
T Consensus       270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~  349 (780)
T 2z6g_A          270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  349 (780)
T ss_dssp             HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence            77778999999999999999999999999999998765555556667789999999999864444566889999999999


Q ss_pred             hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252          307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI  386 (450)
Q Consensus       307 ~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  386 (450)
                      ..++..+++.|+++.|+.+|.+.+..+++.|+++|.+|+......  ... .++++.|+++|...+..+++.|+.+|.+|
T Consensus       350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~-~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L  426 (780)
T 2z6g_A          350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLGSDDINVVTCAAGILSNL  426 (780)
T ss_dssp             TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCC-HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhh-hhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999764321  122 47899999999999999999999999999


Q ss_pred             cccCchhHHHHHHhcChHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhhc
Q 041252          387 CKIAPEECSSAAVDAGLAAKLFLVIQS-GCNPVLKQRSAELLKLCSLNY  434 (450)
Q Consensus       387 ~~~~~~~~~~~~~~~G~i~~L~~ll~s-~~~~~~k~~A~~lL~~ls~~~  434 (450)
                      +..++ +.+..+++.|+++.|+.++.+ +..+.++..|..+|..++...
T Consensus       427 ~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~  474 (780)
T 2z6g_A          427 TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH  474 (780)
T ss_dssp             TSSCH-HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred             HhCCH-HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            98775 445677789999999999976 323589999999999987643

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=3.7e-22  Score=182.87  Aligned_cols=197  Identities=19%  Similarity=0.222  Sum_probs=179.7

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cchhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSESKT  227 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~k~  227 (450)
                      +..+.++.+|++.+.+.+..|+..|.+++..+++++..+.+.|+++.|+.+|.+. +..++..|+++|.+++. +++++.
T Consensus        12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHH
Confidence            5567889999999999999999999999988889999999999999999999886 78999999999999985 668888


Q ss_pred             hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC-
Q 041252          228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL-  306 (450)
Q Consensus       228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~-  306 (450)
                      .+++.|+++.|+.+|.++++.++..|+++|.+|+..++.....+...|+++.|+++++++ ++.++..++++|.+|+.+ 
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~  169 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG  169 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999877666666667889999999999986 688999999999999976 


Q ss_pred             hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252          307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL  347 (450)
Q Consensus       307 ~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~  347 (450)
                      ++++..+++.|+++.|++++.+.++++++.|+.+|.+|+.+
T Consensus       170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            78899999999999999999999999999999999999863

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=9.2e-22  Score=180.23  Aligned_cols=198  Identities=26%  Similarity=0.248  Sum_probs=176.9

Q ss_pred             CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHH
Q 041252          231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEV  309 (450)
Q Consensus       231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~  309 (450)
                      ..+..+.|+.+|.+++++++..|+++|.+|+..++.....+.+.|+++.|+++|+++ ++.++..|+++|.||+ .++++
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHH
Confidence            468899999999999999999999999999977666666777889999999999987 6889999999999999 57789


Q ss_pred             HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252          310 RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK  388 (450)
Q Consensus       310 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  388 (450)
                      +..+++.|+++.|+.+|.++++.+++.|+++|.+|+.. ++.+..+.+ .|+++.|++++.+.+..+++.|+.+|++++.
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999964 667778887 8999999999999999999999999999999


Q ss_pred             cCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252          389 IAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL  432 (450)
Q Consensus       389 ~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~  432 (450)
                      .++ +.+..+.+.|+++.|+.++.++ ++.+++.|..+|..++.
T Consensus       168 ~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGN-EQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCH-HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred             CCc-HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence            765 4456778999999999999987 78999999999998764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.89  E-value=2.2e-22  Score=220.05  Aligned_cols=278  Identities=17%  Similarity=0.161  Sum_probs=244.3

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhh-CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDE-GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK  226 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~-G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k  226 (450)
                      .+.++.|+..|++.+..+|..|+..|.+++.. ..++..+.+. |+++.|+.+|.+..+..++..|+.+|.+|+.+++++
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~  227 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL  227 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            47789999999988889999999999999865 4577777754 899999999975447789999999999999999999


Q ss_pred             hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-
Q 041252          227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-  305 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-  305 (450)
                      ..+.+.|+++.|+.+|++++..++..|+++|.+|+...+.....+...|+++.|+.+|.++ +..++..++.+|.+|+. 
T Consensus       228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~-~~~v~~~a~~aL~~La~~  306 (780)
T 2z6g_A          228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYG  306 (780)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999988777777777889999999999985 57788899999999994 


Q ss_pred             ChHHHHHHHhcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252          306 LNEVRSLVVSIGAVPQLVELLPSLD-PDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW  384 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~~~~-~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~  384 (450)
                      +++++..+++.|+++.|+.+|++++ ....+.++.+|.+|+.+++++..+++ .|+++.|+.++...+...++.|+++|.
T Consensus       307 ~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~a~~~L~  385 (780)
T 2z6g_A          307 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLR  385 (780)
T ss_dssp             CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHH-TTHHHHHGGGTTCSCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHH-hchHHHHHHHHcCCchHHHHHHHHHHH
Confidence            6889999999999999999998765 45677899999999999999999998 899999999999989999999999999


Q ss_pred             HhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          385 SICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       385 ~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      +|+...+..    ....++++.|+.++.+. ++.+++.|..+|..++.+
T Consensus       386 ~L~~~~~~~----~~~~~~i~~Lv~lL~~~-d~~vr~~A~~aL~~L~~~  429 (780)
T 2z6g_A          386 NLSDAATKQ----EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCN  429 (780)
T ss_dssp             HHHTTCTTC----SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSS
T ss_pred             HHhccchhh----hhhhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhC
Confidence            999876432    12257899999999876 788999999999988765

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.86  E-value=3.6e-21  Score=204.29  Aligned_cols=282  Identities=14%  Similarity=0.109  Sum_probs=224.4

Q ss_pred             hhcHHHHHHHhhc-cchHHHHHHHHHHHHHHHHcH-------------------------------------H-HHHHHH
Q 041252          148 QGRASELLGTLKK-VKGQARVQALKELHQIAAAHA-------------------------------------S-ARKTMV  188 (450)
Q Consensus       148 ~~~i~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~-------------------------------------~-~r~~i~  188 (450)
                      ++.+..|+..++. .+......++..|.+++...+                                     + +++.+.
T Consensus       375 ~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~  454 (778)
T 3opb_A          375 ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL  454 (778)
T ss_dssp             HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH
Confidence            3557778888874 455566666666665543110                                     1 678899


Q ss_pred             hhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHH---HHHHHHHHHHHHhccCC
Q 041252          189 DEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVE---TKINCTRLIEKLMEEKD  265 (450)
Q Consensus       189 ~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~---~~~~aa~~L~~La~~~~  265 (450)
                      +.|+||.|+.++++. +..+++.|+++|.+|+.++++|..+++.|++++|+.+|.+++..   .|.+|+.+|.+|+...+
T Consensus       455 eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n  533 (778)
T 3opb_A          455 RTELISFLKREMHNL-SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN  533 (778)
T ss_dssp             TTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred             HCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence            999999999999875 78999999999999999999999999999999999999988544   89999999999975433


Q ss_pred             ChhhHhh---hhhHHHHHHHHHhcCCCcc-------------chhHHHHHHHHhccCh-----HHHHHHHhc-CCHHHHH
Q 041252          266 FRPEIVS---SHRLLIGLMRLVKNKRHPN-------------GILPGLSLLRSICLLN-----EVRSLVVSI-GAVPQLV  323 (450)
Q Consensus       266 ~~~~~~~---~~g~l~~Lv~lL~~~~~~~-------------~~~~al~aL~~Ls~~~-----~~~~~iv~~-G~v~~Lv  323 (450)
                      ... ++.   ..|++++|+.+|.......             .+..|+.||.||+..+     +.|..+++. |+++.|.
T Consensus       534 p~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~  612 (778)
T 3opb_A          534 PGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE  612 (778)
T ss_dssp             HHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred             HHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence            222 232   2489999999998311111             1568999999999765     458889985 9999999


Q ss_pred             HhcCCCChhHHHHHHHHHHHhcCChhhH-HHHhccC-----CChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHH
Q 041252          324 ELLPSLDPDCLQLALCILDALSSLPEGK-LALKDCA-----NTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSA  397 (450)
Q Consensus       324 ~lL~~~~~~~~~~al~~L~~L~~~~e~r-~~i~~~~-----g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~  397 (450)
                      ++|.+.+..++..|+.++.||+.+++++ ..+.+..     +.++.||.++...+..+++.|+++|.+++..++ ..++.
T Consensus       613 ~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~-~ia~~  691 (778)
T 3opb_A          613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP-LIAKE  691 (778)
T ss_dssp             HGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH-HHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh-HHHHH
Confidence            9999999999999999999999999886 3554312     248899999999999999999999999977665 34456


Q ss_pred             HHhc-ChHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhh
Q 041252          398 AVDA-GLAAKLFLVIQS--GCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       398 ~~~~-G~i~~L~~ll~s--~~~~~~k~~A~~lL~~ls~~  433 (450)
                      +++. +++..++.+++.  + ++.++.+++.++.++...
T Consensus       692 ll~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          692 LLTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             HTTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT
T ss_pred             HHHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHh
Confidence            6665 899999999988  5 789999999999999873

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.86  E-value=1e-22  Score=159.46  Aligned_cols=74  Identities=30%  Similarity=0.410  Sum_probs=69.7

Q ss_pred             ccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252           63 LAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY  137 (450)
Q Consensus        63 ~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~  137 (450)
                      ...+|++|+||||+++|+|||+++|||||||+||++||.. +.+||.|+++++..+++||+.|+++|+.|+.+++
T Consensus         8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~   81 (85)
T 2kr4_A            8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ   81 (85)
T ss_dssp             CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence            3578999999999999999999999999999999999996 7899999999999999999999999999998865

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.86  E-value=2.9e-22  Score=161.58  Aligned_cols=75  Identities=31%  Similarity=0.431  Sum_probs=70.4

Q ss_pred             hccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252           62 DLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY  137 (450)
Q Consensus        62 ~~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~  137 (450)
                      +...+|++|+||||+++|+|||+++|||||||.||++||.. +.+||.|+++++..+++||+.|+++|+.|+.+++
T Consensus        22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~   96 (100)
T 2kre_A           22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ   96 (100)
T ss_dssp             SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred             hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence            34578999999999999999999999999999999999985 7899999999999999999999999999999875

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.85  E-value=4.4e-22  Score=159.88  Aligned_cols=76  Identities=29%  Similarity=0.367  Sum_probs=70.9

Q ss_pred             ccCCCCeeeCcCCCCCCCCCeeCCCC-CcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcccc
Q 041252           63 LAEIPSVFVCPISLEPMQDPVTLCTG-QTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLL  139 (450)
Q Consensus        63 ~~~~p~~~~Cpi~~~~m~dPv~~~~g-~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~~~  139 (450)
                      ...+|++|+||||+++|+|||+++|| |||||.||++||.. +.+||.|++++...+++||+.|+++|+.|+.+++..
T Consensus        16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~   92 (98)
T 1wgm_A           16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ   92 (98)
T ss_dssp             CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred             hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence            35789999999999999999999999 99999999999986 689999999999999999999999999999987643

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.84  E-value=3.1e-20  Score=179.72  Aligned_cols=224  Identities=17%  Similarity=0.156  Sum_probs=183.7

Q ss_pred             hhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHH-HhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHH
Q 041252          206 HAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD-MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLV  284 (450)
Q Consensus       206 ~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL  284 (450)
                      .+.+..|+..|.++..+.++...+.+.|+++.|+. +|.++++++|..|+++|.+++.+++..+..+...|+++.|+.+|
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            35677899999999998889999999999999999 99999999999999999999988877777788889999999999


Q ss_pred             hcCCCccchhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChH
Q 041252          285 KNKRHPNGILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIP  362 (450)
Q Consensus       285 ~~~~~~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~  362 (450)
                      ++..++.+++.|+++|.||+. ++.....+++.|+++.|+.+|.+++..++..|+++|.+|+.. ++.+..+++ .|+++
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i~  212 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMVQ  212 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCHH
Confidence            964457789999999999995 556677888999999999999999999999999999999864 788999998 89999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhc--ChHHHH---HHHHHcCC-CHHHHHHHHHHHHHHH
Q 041252          363 NTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDA--GLAAKL---FLVIQSGC-NPVLKQRSAELLKLCS  431 (450)
Q Consensus       363 ~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~--G~i~~L---~~ll~s~~-~~~~k~~A~~lL~~ls  431 (450)
                      .|+++|.+.+..+++.|+.+|.+|....+ .........  .....|   ..-+++.. .....+.|..++..+-
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~-~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFP-QGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCH-HHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCCh-hHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999998754 222222211  122222   23334221 3566677777777654

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.83  E-value=4.6e-21  Score=169.45  Aligned_cols=76  Identities=26%  Similarity=0.369  Sum_probs=71.1

Q ss_pred             ccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhccc
Q 041252           63 LAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYL  138 (450)
Q Consensus        63 ~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~~  138 (450)
                      ...+|++|+||||+++|+|||+++|||||||.||++||..++.+||.|+.+++..+++||+.|+++|+.|+.+++.
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~  175 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGW  175 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTT
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCC
Confidence            4689999999999999999999999999999999999987545799999999999999999999999999999875

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.82  E-value=3.3e-19  Score=172.49  Aligned_cols=190  Identities=17%  Similarity=0.172  Sum_probs=166.1

Q ss_pred             hHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHh-hhCCCCChhhHHHHHHHHHhcCCC-chhhhhccCCCchHHHHH
Q 041252          163 GQARVQALKELHQIAAAHASARKTMVDEGGVALISS-LLGPFTSHAVGSEAVGVLVNLTLD-SESKTNLMQPAKVSLLVD  240 (450)
Q Consensus       163 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~-lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~  240 (450)
                      .+.+..|+..|..++. +.+|...+.+.|++|.|+. +|.+. +..++..|+++|.+++.+ +.++..+++.|++++|+.
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~  131 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  131 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence            3578889999999985 4568888999999999999 99875 789999999999998875 578889999999999999


Q ss_pred             HhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCC
Q 041252          241 MLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGA  318 (450)
Q Consensus       241 lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~  318 (450)
                      +|+++ +..++.+|+++|.+|+.++......+...|+++.|+.+|+++ ++.++..|+++|.+|+ .+++.+..+++.|+
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~  210 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  210 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence            99964 899999999999999877666565677788999999999986 7889999999999998 45778999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHh
Q 041252          319 VPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALK  355 (450)
Q Consensus       319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~  355 (450)
                      ++.|+.+|.+.+..+++.|+.+|.+|+.. +..+....
T Consensus       211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~  248 (296)
T 1xqr_A          211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR  248 (296)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh
Confidence            99999999999999999999999999976 44444443

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.5e-18  Score=184.37  Aligned_cols=327  Identities=13%  Similarity=0.113  Sum_probs=238.8

Q ss_pred             CCCCcccHHHHHH----HHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhcc
Q 041252           86 CTGQTYERSNILK----WFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKV  161 (450)
Q Consensus        86 ~~g~ty~r~~I~~----~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~  161 (450)
                      .|.+.=||..|.+    |+...-.          . +-+.++++--+++-|.....     ........+..+...|.+.
T Consensus       283 ACi~~~cR~~I~~~~~~~L~~~l~----------~-~~ir~lAavvL~KL~~~~~~-----~~~si~~La~~~~~~L~~~  346 (778)
T 3opb_A          283 ACIDETMRTYITENYLQLLERSLN----------V-EDVQIYSALVLVKTWSFTKL-----TCINLKQLSEIFINAISRR  346 (778)
T ss_dssp             HCCSHHHHHHHHHHHHHHHHHHTT----------S-GGGHHHHHHHHHHHTGGGTC-----TTCCHHHHHHHHHHHTTTC
T ss_pred             HhCCcHHHHHHHHhHHHHHHHHhc----------c-HHHHHHHHHHHHHHhcCCCC-----CcCcHHHHHHHHHHHHhcC
Confidence            4777777777765    4443211          1 12344555556666654321     1111223455566667766


Q ss_pred             chHHHHHHHHHHHHHHHHcHHHHHHHHhh-CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch----------------
Q 041252          162 KGQARVQALKELHQIAAAHASARKTMVDE-GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE----------------  224 (450)
Q Consensus       162 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~-G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~----------------  224 (450)
                      +.+.+..|++.|..++. +++.|+.+++. |.++.|+.+++...+..+...++.+|.||+.+.+                
T Consensus       347 ~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A  425 (778)
T 3opb_A          347 IVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXX  425 (778)
T ss_dssp             CHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC---------
T ss_pred             CccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhc
Confidence            66668999999999975 56788888876 6699999999863467899999999999875221                


Q ss_pred             -----------------------hhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHH
Q 041252          225 -----------------------SKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLM  281 (450)
Q Consensus       225 -----------------------~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv  281 (450)
                                             ++..+.+.|+++.|+.+++++++.+|+.|+++|.+|+.+.+. +..+.+.|+++.|+
T Consensus       426 ~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~-R~~lvqqGal~~LL  504 (778)
T 3opb_A          426 XXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNF-IPQLAQQGAVKIIL  504 (778)
T ss_dssp             ---------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG-HHHHHHTTHHHHHH
T ss_pred             cccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHH
Confidence                                   456788999999999999999999999999999999876554 44566789999999


Q ss_pred             HHHhcCCCcc--chhHHHHHHHHhccChHHHHHHH--h-cCCHHHHHHhcCC-CCh-------------hHHHHHHHHHH
Q 041252          282 RLVKNKRHPN--GILPGLSLLRSICLLNEVRSLVV--S-IGAVPQLVELLPS-LDP-------------DCLQLALCILD  342 (450)
Q Consensus       282 ~lL~~~~~~~--~~~~al~aL~~Ls~~~~~~~~iv--~-~G~v~~Lv~lL~~-~~~-------------~~~~~al~~L~  342 (450)
                      .+|.++....  ++..|+.||.+|....+....+-  + .|+|++|+++|.. ...             --+..|+.+|.
T Consensus       505 ~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALT  584 (778)
T 3opb_A          505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALT  584 (778)
T ss_dssp             HHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHH
T ss_pred             HHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHH
Confidence            9998863221  68899999999985443333221  1 4999999999973 111             12778999999


Q ss_pred             HhcCCh-----hhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHh------cChHHHHHHHH
Q 041252          343 ALSSLP-----EGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVD------AGLAAKLFLVI  411 (450)
Q Consensus       343 ~L~~~~-----e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~------~G~i~~L~~ll  411 (450)
                      ||+..+     +.|..++.+.|+++.|+.+|.+.+..+++.|+.++.||+.+.. ...+....      .+.++.|+.++
T Consensus       585 NLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~~~~~~rL~lLV~Ll  663 (778)
T 3opb_A          585 NLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL-TIAAKFFNLENPQSLRNFNILVKLL  663 (778)
T ss_dssp             HHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSSHHHHHHHHHHHHGG
T ss_pred             HHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcCchhhccHHHHHHHH
Confidence            999876     3477777733899999999999999999999999999997542 21112221      22478899999


Q ss_pred             HcCCCHHHHHHHHHHHHHHHh
Q 041252          412 QSGCNPVLKQRSAELLKLCSL  432 (450)
Q Consensus       412 ~s~~~~~~k~~A~~lL~~ls~  432 (450)
                      +++ +..+|++|+++|.+++.
T Consensus       664 ~s~-D~~~r~AAagALAnLts  683 (778)
T 3opb_A          664 QLS-DVESQRAVAAIFANIAT  683 (778)
T ss_dssp             GCS-CHHHHHHHHHHHHHHHH
T ss_pred             cCC-CHHHHHHHHHHHHHhcC
Confidence            887 89999999999999853

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.80  E-value=4.2e-20  Score=142.49  Aligned_cols=75  Identities=48%  Similarity=0.853  Sum_probs=70.5

Q ss_pred             cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhccc
Q 041252           64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYL  138 (450)
Q Consensus        64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~~  138 (450)
                      .++|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.++...++.||..|+++|+.|..+++.
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~   77 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence            468899999999999999999999999999999999997788999999999989999999999999999998764

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.2e-19  Score=144.93  Aligned_cols=73  Identities=25%  Similarity=0.414  Sum_probs=64.6

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcC-----CCCCCCcCCc---CCCCCCcchHHHHHHHHHHHHh
Q 041252           65 EIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLG-----RYTCPTTMQE---LWDDSVTPNKTLYHLIHTWFSQ  135 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~-----~~~cP~~~~~---l~~~~l~~n~~L~~~I~~w~~~  135 (450)
                      ..+.+|+||||+++|+|||+++ |||+|||.||++||..+     ..+||+++.+   +...+++||..|+++|+.|+.+
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~   82 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK   82 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence            4578899999999999999996 99999999999999863     4689995544   8889999999999999999988


Q ss_pred             cc
Q 041252          136 KY  137 (450)
Q Consensus       136 ~~  137 (450)
                      +.
T Consensus        83 ~~   84 (94)
T 2yu4_A           83 RH   84 (94)
T ss_dssp             CC
T ss_pred             hc
Confidence            65

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.75  E-value=2.8e-19  Score=171.87  Aligned_cols=75  Identities=25%  Similarity=0.385  Sum_probs=70.8

Q ss_pred             cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhccc
Q 041252           64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYL  138 (450)
Q Consensus        64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~~  138 (450)
                      ..+|.+|+||||+++|+|||+++|||||||.||++|+..++.+||.|+.+++..+++||..|+++|++|+.+++.
T Consensus       203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~  277 (281)
T 2c2l_A          203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW  277 (281)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred             CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCC
Confidence            578999999999999999999999999999999999998666799999999989999999999999999999875

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.65  E-value=2.3e-17  Score=120.03  Aligned_cols=55  Identities=18%  Similarity=0.183  Sum_probs=50.4

Q ss_pred             eeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHH
Q 041252           69 VFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKT  124 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~  124 (450)
                      +|.||||+++|+|||++ +|||+|||++|++|+.. +.+||.|++++..++++||+.
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~   58 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP   58 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence            69999999999999999 89999999999999986 467999999999999999863

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.65  E-value=2.2e-16  Score=125.59  Aligned_cols=75  Identities=25%  Similarity=0.347  Sum_probs=67.1

Q ss_pred             cCCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhc-CCCCCCCcCCcC-CCCCCcchHHHHHHHHHHHHhccc
Q 041252           64 AEIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSL-GRYTCPTTMQEL-WDDSVTPNKTLYHLIHTWFSQKYL  138 (450)
Q Consensus        64 ~~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~-~~~~cP~~~~~l-~~~~l~~n~~L~~~I~~w~~~~~~  138 (450)
                      ..++++|.||||.++|.|||+++ |||+||+.||.+|+.. +...||.|+.++ ....+.+|..++++|+.|...++.
T Consensus         8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~   85 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY   85 (92)
T ss_dssp             CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred             ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence            46788999999999999999999 9999999999999975 357899999997 567899999999999999887654

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.62  E-value=1.7e-16  Score=170.24  Aligned_cols=76  Identities=30%  Similarity=0.380  Sum_probs=71.0

Q ss_pred             hhccCCCCeeeCcCCCCCCCCCeeCCCC-CcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252           61 LDLAEIPSVFVCPISLEPMQDPVTLCTG-QTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY  137 (450)
Q Consensus        61 ~~~~~~p~~~~Cpi~~~~m~dPv~~~~g-~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~  137 (450)
                      .+..++|++|+|||++++|+|||++++| +||||++|++|+.. +.+||.|+++++..+++||++|+++|++|+.++.
T Consensus       883 ~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~  959 (968)
T 3m62_A          883 LEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK  959 (968)
T ss_dssp             HHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             ccccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence            3357999999999999999999999998 79999999999987 6799999999999999999999999999999865

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.54  E-value=2.9e-15  Score=125.94  Aligned_cols=69  Identities=17%  Similarity=0.308  Sum_probs=62.9

Q ss_pred             CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC-CCCcchHHHHHHHHHHHHh
Q 041252           67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD-DSVTPNKTLYHLIHTWFSQ  135 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-~~l~~n~~L~~~I~~w~~~  135 (450)
                      ++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++.. ..+.+|..+.++|+.|...
T Consensus        50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~  119 (124)
T 3fl2_A           50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG  119 (124)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred             ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence            45689999999999999999999999999999999766789999999977 7899999999999998754

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.9e-15  Score=139.58  Aligned_cols=72  Identities=14%  Similarity=0.223  Sum_probs=64.9

Q ss_pred             cCCCCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhc-CCCCCCC--cCCcCCCCCCcchHHHHHHHHHHHHh
Q 041252           64 AEIPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSL-GRYTCPT--TMQELWDDSVTPNKTLYHLIHTWFSQ  135 (450)
Q Consensus        64 ~~~p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~-~~~~cP~--~~~~l~~~~l~~n~~L~~~I~~w~~~  135 (450)
                      .....+|+||||+++|+|||+. .|||+|||.||.+||.. +...||+  |++.+...++.||+.|+.+|+.|..+
T Consensus       176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred             cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence            4567789999999999999985 99999999999999986 3467999  99999999999999999999999775

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.50  E-value=8.9e-15  Score=126.78  Aligned_cols=70  Identities=21%  Similarity=0.408  Sum_probs=63.7

Q ss_pred             CCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCC-CCcchHHHHHHHHHHHHh
Q 041252           66 IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDD-SVTPNKTLYHLIHTWFSQ  135 (450)
Q Consensus        66 ~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~-~l~~n~~L~~~I~~w~~~  135 (450)
                      +++.|.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++... .+.+|..++++|+.|...
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~  145 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG  145 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence            4567899999999999999999999999999999997667899999999877 899999999999988753

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.50  E-value=5e-13  Score=138.76  Aligned_cols=276  Identities=15%  Similarity=0.166  Sum_probs=208.0

Q ss_pred             hhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCC-CChhhHHHHHHHHHhc-CCCch
Q 041252          148 QGRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPF-TSHAVGSEAVGVLVNL-TLDSE  224 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~-~~~~v~~~Al~~L~~L-s~~~~  224 (450)
                      ...|+.|+..|++. -.+.|+.|+..|+.++++   +|..+. .+|++.|+..|+.. .|.++...++.+|.++ +.+++
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            35688899988774 467899999999999753   555554 55699999999753 4678888899999884 33322


Q ss_pred             h-----------------hhhc-cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCC-hhhHh-hhhhHHHHHHHHH
Q 041252          225 S-----------------KTNL-MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF-RPEIV-SSHRLLIGLMRLV  284 (450)
Q Consensus       225 ~-----------------k~~i-~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~-~~~~~-~~~g~l~~Lv~lL  284 (450)
                      .                 ...+ .+.+.|+.|+.+|++.+..+|.++..+|..|+..... .++.+ ...++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence            1                 1122 3578999999999999999999999999999876654 34444 5668999999999


Q ss_pred             hcCCCccchhHHHHHHHHhccChHHHHHHHh-cCCHHHHHHhcCCCC----hhHHHHHHHHHHHhcCC-hhhHHHHhccC
Q 041252          285 KNKRHPNGILPGLSLLRSICLLNEVRSLVVS-IGAVPQLVELLPSLD----PDCLQLALCILDALSSL-PEGKLALKDCA  358 (450)
Q Consensus       285 ~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~~----~~~~~~al~~L~~L~~~-~e~r~~i~~~~  358 (450)
                      .+. +..++..++..|.+|+.+..+..+++. .|+++.|+.++.+..    ..+.+.|+.+|.+|... +.|+..|.+ .
T Consensus       176 ~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE-t  253 (651)
T 3grl_A          176 ADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE-G  253 (651)
T ss_dssp             GCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH-T
T ss_pred             hCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH-c
Confidence            986 466788899999999977666666665 699999999996543    47899999999999865 779999999 8


Q ss_pred             CChHHHHHHHhcCC------hHHHHH---HHHHHHHhcccCc-----hhHHHHHHhcChHHHHHHHHHcC-CCHHHHHHH
Q 041252          359 NTIPNTVRLLMRVS------EDCTQY---ALSILWSICKIAP-----EECSSAAVDAGLAAKLFLVIQSG-CNPVLKQRS  423 (450)
Q Consensus       359 g~i~~Lv~lL~~~s------~~~~e~---A~~~L~~L~~~~~-----~~~~~~~~~~G~i~~L~~ll~s~-~~~~~k~~A  423 (450)
                      |+++.|..++....      +....+   ++.++.-++..+.     ...+..+.+.|++..|+.++.+. ....++..|
T Consensus       254 ~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~A  333 (651)
T 3grl_A          254 SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTET  333 (651)
T ss_dssp             TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred             CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHH
Confidence            99999999986432      223333   5566666665432     13466677999999999998754 345677666


Q ss_pred             HHHHHH
Q 041252          424 AELLKL  429 (450)
Q Consensus       424 ~~lL~~  429 (450)
                      ...+.-
T Consensus       334 l~tla~  339 (651)
T 3grl_A          334 INTVSE  339 (651)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.46  E-value=5.6e-12  Score=130.93  Aligned_cols=280  Identities=15%  Similarity=0.145  Sum_probs=212.4

Q ss_pred             hcHHHHHHHhhcc--chHHHHHHHHHHHHHHHHcHH-----------------HHHH-HHhhCChHHHHhhhCCCCChhh
Q 041252          149 GRASELLGTLKKV--KGQARVQALKELHQIAAAHAS-----------------ARKT-MVDEGGVALISSLLGPFTSHAV  208 (450)
Q Consensus       149 ~~i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~-----------------~r~~-i~~~G~i~~Lv~lL~~~~~~~v  208 (450)
                      ..++.|+..|++.  +.+....+++.|.++...++.                 +.+. +.+.+.|+.|+.+|... +..+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-df~v  138 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-DFHV  138 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC-CHHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-cHHH
Confidence            4578888888764  455667788888776543221                 2223 34568899999999875 7889


Q ss_pred             HHHHHHHHHhcCCCc--hhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh
Q 041252          209 GSEAVGVLVNLTLDS--ESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK  285 (450)
Q Consensus       209 ~~~Al~~L~~Ls~~~--~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~  285 (450)
                      +..++..|..|+...  .+++.|. .+++|+.|+.+|+.....+|..|..+|.+|+.++...+.++.-.|+++.|+.+++
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            999999999977643  3677777 6799999999999989999999999999999999888888888899999999998


Q ss_pred             cCCC---ccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCCh------hHHHH---HHHHHHHhcCC-----
Q 041252          286 NKRH---PNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDP------DCLQL---ALCILDALSSL-----  347 (450)
Q Consensus       286 ~~~~---~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~------~~~~~---al~~L~~L~~~-----  347 (450)
                      .++.   ..++..++.+|.||. .+..|+..+.|.|+++.|..+|.....      ....+   ++.+++.|...     
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            7531   245679999999998 456799999999999999999965432      13334   77788888753     


Q ss_pred             --hhhHHHHhccCCChHHHHHHHhcC--ChHHHHHHHHHHHHhcccCchhHHHHHHhc---------ChHHHHHHHHHcC
Q 041252          348 --PEGKLALKDCANTIPNTVRLLMRV--SEDCTQYALSILWSICKIAPEECSSAAVDA---------GLAAKLFLVIQSG  414 (450)
Q Consensus       348 --~e~r~~i~~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~---------G~i~~L~~ll~s~  414 (450)
                        ..++.++.+ .|+++.|+++++..  +..++..|+.++..+...++. .+....+.         -++..|+.++.+.
T Consensus       299 ~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~-~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~  376 (651)
T 3grl_A          299 ATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV-NQDYFASVNAPSNPPRPAIVVLLMSMVNER  376 (651)
T ss_dssp             HHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHCEESSSSCEEHHHHHHHHHTCTT
T ss_pred             CCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH-HHHHHhhccCCCCCCcChHHHHHHHHhccc
Confidence              357888888 79999999999875  578889999999999888763 33333332         1333344555555


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 041252          415 CNPVLKQRSAELLKLCS  431 (450)
Q Consensus       415 ~~~~~k~~A~~lL~~ls  431 (450)
                      .....|-+|...++-.-
T Consensus       377 ~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          377 QPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHH
Confidence            45778877777776643

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.45  E-value=3.6e-14  Score=114.24  Aligned_cols=70  Identities=19%  Similarity=0.315  Sum_probs=63.4

Q ss_pred             CCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252           67 PSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY  137 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~  137 (450)
                      ++++.||||.+.|.+|+++ +|||+||+.||.+|+.. ..+||.|+.++...++.+|..++++|+.|.....
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~   90 (99)
T 2y43_A           20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN   90 (99)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence            3468899999999999988 89999999999999996 6789999999988889999999999999987643

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.44  E-value=5.4e-14  Score=113.37  Aligned_cols=70  Identities=20%  Similarity=0.252  Sum_probs=61.7

Q ss_pred             CCCeeeCcCCCCCCCCCee-CCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHh
Q 041252           66 IPSVFVCPISLEPMQDPVT-LCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQ  135 (450)
Q Consensus        66 ~p~~~~Cpi~~~~m~dPv~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~  135 (450)
                      +.+++.||||++.|.+|++ ++|||+||+.||.+|+......||.|+.++...++.+|..+..++++..+.
T Consensus        19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l   89 (100)
T 3lrq_A           19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL   89 (100)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred             CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence            3456889999999999999 999999999999999998557899999999989999999888877776554

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.41  E-value=9.6e-14  Score=113.62  Aligned_cols=68  Identities=13%  Similarity=0.305  Sum_probs=60.6

Q ss_pred             CCCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCCC----CCcchHHHHHHHHHHHH
Q 041252           66 IPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWDD----SVTPNKTLYHLIHTWFS  134 (450)
Q Consensus        66 ~p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~----~l~~n~~L~~~I~~w~~  134 (450)
                      +++++.||||.++|.+|+++ +|||+||+.||.+|+.. ...||.|+..+...    .+.+|..+.++++.|..
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred             cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence            45678999999999999997 99999999999999997 58899999998765    67899999999988854

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.40  E-value=1e-13  Score=115.35  Aligned_cols=70  Identities=20%  Similarity=0.387  Sum_probs=63.4

Q ss_pred             cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHH
Q 041252           64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWF  133 (450)
Q Consensus        64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~  133 (450)
                      ..++++|.||||.++|.+|++++|||+||+.||.+|+..+..+||.|+.++....+.+|..+.+.|..+.
T Consensus        13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~   82 (118)
T 3hct_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM   82 (118)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred             cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence            3677889999999999999999999999999999999975668999999998888999999999887763

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.40  E-value=9.6e-15  Score=112.46  Aligned_cols=64  Identities=22%  Similarity=0.383  Sum_probs=56.1

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcC------CCCCCCcCCcCCCCCCcchHHHHHH
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG------RYTCPTTMQELWDDSVTPNKTLYHL  128 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~------~~~cP~~~~~l~~~~l~~n~~L~~~  128 (450)
                      .+.+++.||||.+.|.+|++++|||+||+.||.+|+...      ...||.|+.++...++.+|..|+++
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l   77 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI   77 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred             hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence            566789999999999999999999999999999999863      5689999999988888888766543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.4e-13  Score=106.45  Aligned_cols=63  Identities=24%  Similarity=0.252  Sum_probs=53.7

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHH
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLI  129 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I  129 (450)
                      .....+.||||.+.|.+|++++|||+||+.||.+|+.. ...||.|+.++. ..+.+|..+...+
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~   73 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKL   73 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHH
T ss_pred             cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHH
Confidence            34567899999999999999999999999999999986 678999999986 6777886554443

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.39  E-value=5.4e-14  Score=109.65  Aligned_cols=64  Identities=22%  Similarity=0.380  Sum_probs=56.2

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcC-----CCCCCCcCCcCCCCCCcchHHHHHH
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG-----RYTCPTTMQELWDDSVTPNKTLYHL  128 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~-----~~~cP~~~~~l~~~~l~~n~~L~~~  128 (450)
                      .+.+++.||||.+.+.+|++++|||+||+.||.+|+...     ...||.|+.++...++.+|..++++
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecw_A           15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI   83 (85)
T ss_dssp             CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred             hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence            456778999999999999999999999999999999862     5789999999988889998766543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=3.5e-13  Score=99.86  Aligned_cols=55  Identities=15%  Similarity=0.248  Sum_probs=49.1

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCC
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV  119 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l  119 (450)
                      .+++.+.||||.+.+++|++++|||+||+.||.+|+..+...||.|+.++...++
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            5677899999999999999999999999999999997667889999998876543

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.37  E-value=1.7e-13  Score=113.86  Aligned_cols=67  Identities=15%  Similarity=0.330  Sum_probs=61.2

Q ss_pred             CCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhc
Q 041252           67 PSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQK  136 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~  136 (450)
                      .+++.||||.++|.+||++ +|||+||+.||.+|+.   ..||.|+.++...++.+|..+.++++.|....
T Consensus        20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~   87 (117)
T 1jm7_B           20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR   87 (117)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence            3568899999999999999 9999999999999987   67999999998889999999999999887654

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.37  E-value=9.5e-14  Score=114.99  Aligned_cols=69  Identities=20%  Similarity=0.311  Sum_probs=61.0

Q ss_pred             CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC-------CCCcchHHHHHHHHHHHHh
Q 041252           67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD-------DSVTPNKTLYHLIHTWFSQ  135 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-------~~l~~n~~L~~~I~~w~~~  135 (450)
                      .++|.||||.+.|.+|++++|||+||+.||.+|+..+...||.|+..+..       ..+..|..+...|+.|...
T Consensus        13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~   88 (115)
T 3l11_A           13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR   88 (115)
T ss_dssp             HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred             CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence            34689999999999999999999999999999998767889999998753       6677899999999998654

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=7.7e-14  Score=108.76  Aligned_cols=64  Identities=20%  Similarity=0.496  Sum_probs=56.4

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc-----CCCCCCCcCCcCCCCCCcchHHHHHH
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL-----GRYTCPTTMQELWDDSVTPNKTLYHL  128 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~-----~~~~cP~~~~~l~~~~l~~n~~L~~~  128 (450)
                      .+.+.+.||||.+.+.+|++++|||+||+.||.+|+..     +...||.|+.++...++.+|..++++
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecv_A           15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI   83 (85)
T ss_dssp             CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred             HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence            56678999999999999999999999999999999976     36789999999998889998766543

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.36  E-value=2e-13  Score=120.44  Aligned_cols=71  Identities=23%  Similarity=0.429  Sum_probs=61.6

Q ss_pred             CCCCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCC-CCCCcchHHHHHHHHHHHHh
Q 041252           65 EIPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELW-DDSVTPNKTLYHLIHTWFSQ  135 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~-~~~l~~n~~L~~~I~~w~~~  135 (450)
                      .+.+.+.||||.+.|.+|+++ +|||+||+.||.+|+..++..||.|+.++. ...+.+|..+.++|..|...
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~  122 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS  122 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence            345678999999999999987 999999999999999977888999999984 46789999999999988553

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.36  E-value=5.4e-13  Score=101.27  Aligned_cols=59  Identities=27%  Similarity=0.381  Sum_probs=49.8

Q ss_pred             cCCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcC-CCCCCCcCCcCC-CCCCcch
Q 041252           64 AEIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLG-RYTCPTTMQELW-DDSVTPN  122 (450)
Q Consensus        64 ~~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~-~~~l~~n  122 (450)
                      ..+++++.||||.++|.+||+++ |||+||+.||.+|+... ...||.|+.++. .+.+.+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A           10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            46678899999999999999999 99999999999999863 468999999753 3455555

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=7.6e-13  Score=99.84  Aligned_cols=57  Identities=19%  Similarity=0.319  Sum_probs=51.1

Q ss_pred             CCCCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252           65 EIPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN  122 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n  122 (450)
                      .+.+++.||||.+.|.||+++ +|||+||+.||.+|+.. ...||.|+.++...++.+|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred             hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence            456789999999999999997 99999999999999987 6889999999988777665

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.33  E-value=6.5e-13  Score=109.28  Aligned_cols=69  Identities=19%  Similarity=0.432  Sum_probs=59.5

Q ss_pred             CCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcC--CCCCCCcCCcCCCCCCcchHHHHHHHHHHHH
Q 041252           66 IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG--RYTCPTTMQELWDDSVTPNKTLYHLIHTWFS  134 (450)
Q Consensus        66 ~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~  134 (450)
                      +.+.+.||||.+.+.+|++++|||+||+.||.+|+..+  ...||.|+.++....+.+|..+.+.++.+..
T Consensus        18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999853  3589999999998899999877777776654

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.32  E-value=7.2e-13  Score=113.31  Aligned_cols=64  Identities=20%  Similarity=0.336  Sum_probs=51.8

Q ss_pred             CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHH
Q 041252           67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWF  133 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~  133 (450)
                      .+++.||||.+.|.|||+++|||+||+.||.+|+.. +.+||.|+.++...  .+|..+...|+.+.
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV  114 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence            356889999999999999999999999999999986 67899999987543  23455555555554

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=2.5e-12  Score=97.20  Aligned_cols=55  Identities=24%  Similarity=0.520  Sum_probs=48.3

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc--CCCCCCCcCCcCCCCCC
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL--GRYTCPTTMQELWDDSV  119 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~~l  119 (450)
                      .+.+++.||||.+.+.+|++++|||+||+.||.+|+..  +...||.|+.++...++
T Consensus        16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            56778999999999999999999999999999999973  46689999998876543

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.28  E-value=4.5e-13  Score=114.74  Aligned_cols=68  Identities=15%  Similarity=0.301  Sum_probs=57.3

Q ss_pred             cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC---------CCCcchHHHHHHHHH
Q 041252           64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD---------DSVTPNKTLYHLIHT  131 (450)
Q Consensus        64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~---------~~l~~n~~L~~~I~~  131 (450)
                      ..++++|.||||.++|.+||+++|||+||+.||.+|+..+..+||.|+.++..         ..+.+|..+++.|..
T Consensus        26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~  102 (141)
T 3knv_A           26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES  102 (141)
T ss_dssp             GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred             ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence            36778999999999999999999999999999999999766789999986432         245688888777754

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.27  E-value=1.5e-12  Score=115.45  Aligned_cols=69  Identities=20%  Similarity=0.385  Sum_probs=62.6

Q ss_pred             cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHH
Q 041252           64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTW  132 (450)
Q Consensus        64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w  132 (450)
                      ..+++.|.||||.++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..+.+.|.++
T Consensus        13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (170)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence            367889999999999999999999999999999999987566999999999888899999888888764

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.26  E-value=1.6e-12  Score=107.74  Aligned_cols=65  Identities=18%  Similarity=0.381  Sum_probs=55.1

Q ss_pred             CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCc-chHHHHHHHHHH
Q 041252           68 SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT-PNKTLYHLIHTW  132 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~-~n~~L~~~I~~w  132 (450)
                      ++|.||||.++|.||++++|||+||+.||.+|+..+..+||.|+.++...++. ++..+.+.+..+
T Consensus        22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l   87 (116)
T 1rmd_A           22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL   87 (116)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred             CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence            46889999999999999999999999999999997667899999998876654 456666666544

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.25  E-value=2.2e-12  Score=95.19  Aligned_cols=55  Identities=20%  Similarity=0.263  Sum_probs=48.8

Q ss_pred             CeeeCcCCCC-CCCCC----eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252           68 SVFVCPISLE-PMQDP----VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN  122 (450)
Q Consensus        68 ~~~~Cpi~~~-~m~dP----v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n  122 (450)
                      +++.||||.+ .+.+|    ++++|||+||+.||.+|+..+...||.|+.++...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            4678999999 99999    5789999999999999998777889999999988777665

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=5.1e-12  Score=92.60  Aligned_cols=46  Identities=28%  Similarity=0.578  Sum_probs=41.6

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc--CCCCCCCc
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL--GRYTCPTT  110 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~--~~~~cP~~  110 (450)
                      .+.+++.||||.+.+.+|++++|||+||+.||.+|+..  +...||.|
T Consensus        16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            56778999999999999999999999999999999985  45689987

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.23  E-value=6.3e-10  Score=101.32  Aligned_cols=190  Identities=15%  Similarity=0.058  Sum_probs=153.4

Q ss_pred             hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhh
Q 041252          190 EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPE  269 (450)
Q Consensus       190 ~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~  269 (450)
                      .+.++.|+..|.+. +..++..|+..|..+..          ..+++.|+.+|.+++..+|..|+.+|..+..       
T Consensus        18 ~~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            45689999999875 78999999999987542          5789999999999999999999999988742       


Q ss_pred             HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh
Q 041252          270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPE  349 (450)
Q Consensus       270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e  349 (450)
                          ...++.|+.+|.++ ++.++..++.+|..+..          .++++.|+.+|.+.++.++..|+.+|..+..   
T Consensus        80 ----~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                24568899999886 68889999999988753          3578999999999999999999999998853   


Q ss_pred             hHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041252          350 GKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL  429 (450)
Q Consensus       350 ~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~  429 (450)
                              ...++.|++++.+.++.++..|+.+|..+..            ..+++.|..+++++ ++.+|..|...|..
T Consensus       142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                    3578899999988889999999999988742            23567788888887 78999999999999


Q ss_pred             HHhhcCC
Q 041252          430 CSLNYTD  436 (450)
Q Consensus       430 ls~~~~~  436 (450)
                      +..+..+
T Consensus       201 ~~~~~~~  207 (211)
T 3ltm_A          201 HKSFNHH  207 (211)
T ss_dssp             -------
T ss_pred             cCCCCCC
Confidence            8877544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.20  E-value=1.3e-09  Score=103.76  Aligned_cols=197  Identities=14%  Similarity=0.058  Sum_probs=148.5

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      ..++.|+..|.+.+..+|..|+..|..+.           ..+.++.|+.+|.+. +..++..|+.+|..+...+.... 
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~~~~~~~~-   89 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKKCED-   89 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTTTHH-
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccC-----------CchHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccccch-
Confidence            45788999999988999999999998774           123578899999875 77899999999988764322111 


Q ss_pred             ccCCCchHHHH-HHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252          229 LMQPAKVSLLV-DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN  307 (450)
Q Consensus       229 i~~~g~i~~Lv-~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~  307 (450)
                          ..++.|. .+++++++.+|..|+.+|..+...+..     ....+++.|+.+++++ ++.++..++.+|.++..  
T Consensus        90 ----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~-----~~~~~~~~L~~~l~d~-~~~vR~~a~~aL~~~~~--  157 (280)
T 1oyz_A           90 ----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI-----YSPKIVEQSQITAFDK-STNVRRATAFAISVIND--  157 (280)
T ss_dssp             ----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC----
T ss_pred             ----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc-----ccHHHHHHHHHHhhCC-CHHHHHHHHHHHHhcCC--
Confidence                1233443 245677999999999999998643321     1345678888888876 68888899999888753  


Q ss_pred             HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhc
Q 041252          308 EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSIC  387 (450)
Q Consensus       308 ~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  387 (450)
                              .++++.|+.+|.+.+..++..|+.+|..+....         ..+++.|++++...++.++..|+.+|..+.
T Consensus       158 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          158 --------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence                    358999999999999999999999998885321         245678888888888888998888888765

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.20  E-value=5.7e-10  Score=101.59  Aligned_cols=188  Identities=16%  Similarity=0.075  Sum_probs=153.6

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      ..++.|+..|++.+..+|..|+..|..+.           ...+++.|+.+|.+. +..++..|+.+|..+.        
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~-----------~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~--------   78 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDE-DAWVRRAAADALGQIG--------   78 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCS-CHHHHHHHHHHHHHHC--------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHcCC-CHHHHHHHHHHHHhhC--------
Confidence            56888999999999999999999888653           235689999999875 7889999999998764        


Q ss_pred             ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252          229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE  308 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~  308 (450)
                        ..+.++.|+.+|.+.++.+|..|+.+|..+..           ...++.|+.++.++ ++.++..++.+|.++..   
T Consensus        79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC---
T ss_pred             --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC---
Confidence              35678999999999999999999999998842           23568899999876 68899999999998853   


Q ss_pred             HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252          309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK  388 (450)
Q Consensus       309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  388 (450)
                             ..+++.|+.++.+.++.++..|+.+|..+..           ..+++.|.+++...++.+++.|..+|..+..
T Consensus       142 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          142 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS  203 (211)
T ss_dssp             -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence                   3478999999999999999999999999853           3467788899988899999999999988876


Q ss_pred             cCc
Q 041252          389 IAP  391 (450)
Q Consensus       389 ~~~  391 (450)
                      ...
T Consensus       204 ~~~  206 (211)
T 3ltm_A          204 FNH  206 (211)
T ss_dssp             ---
T ss_pred             CCC
Confidence            553

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.18  E-value=8e-12  Score=93.78  Aligned_cols=57  Identities=18%  Similarity=0.328  Sum_probs=50.5

Q ss_pred             CCCCeeeCcCCCCCCCCC-------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252           65 EIPSVFVCPISLEPMQDP-------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN  122 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dP-------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n  122 (450)
                      ...+++.||||.+.|.+|       ++++|||+||+.||.+|+.. +.+||.|+.++...++.++
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   69 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   69 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence            445678999999999999       89999999999999999987 5789999999988777765

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=2.5e-11  Score=87.18  Aligned_cols=46  Identities=22%  Similarity=0.637  Sum_probs=41.0

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc--CCCCCCCc
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL--GRYTCPTT  110 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~--~~~~cP~~  110 (450)
                      .+.+.+.||||.+.+.+|++++|||+||+.||.+|+..  +...||.|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            45667899999999999999999999999999999764  46789987

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=3.6e-11  Score=94.18  Aligned_cols=54  Identities=24%  Similarity=0.401  Sum_probs=47.5

Q ss_pred             cCCCCeeeCcCCCCCCCC----CeeCCCCCcccHHHHHHHHhcC--CCCCCCcCCcCCCC
Q 041252           64 AEIPSVFVCPISLEPMQD----PVTLCTGQTYERSNILKWFSLG--RYTCPTTMQELWDD  117 (450)
Q Consensus        64 ~~~p~~~~Cpi~~~~m~d----Pv~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~  117 (450)
                      ..+.+.+.||||.+.|.+    |++++|||+||+.||.+|+...  ...||.|+.++...
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            456778999999999999    9999999999999999999864  47899999987653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.13  E-value=2.1e-09  Score=97.00  Aligned_cols=184  Identities=16%  Similarity=0.068  Sum_probs=153.0

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      +..+.++..|++.+..+|..|+..|..+..           .+.++.|+.+|.+. +..++..|+.+|..+.        
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~--------   73 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE-DAWVRRAAADALGQIG--------   73 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCC-CHHHHHHHHHHHHhhC--------
Confidence            457789999999999999999999886531           35689999999765 7889999999998764        


Q ss_pred             ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252          229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE  308 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~  308 (450)
                        ....++.|+.+|.+.++.+|..|+.+|..+..           ...++.|+.++.++ ++.++..++.+|..+..   
T Consensus        74 --~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           74 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTC---
T ss_pred             --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC---
Confidence              24679999999999999999999999998742           23568888888876 68889999999988753   


Q ss_pred             HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhc
Q 041252          309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSIC  387 (450)
Q Consensus       309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  387 (450)
                             .++++.|+.++.+.++.++..|+.+|..+..           ..+++.|.+++...++.+++.|..+|..+.
T Consensus       137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   4578999999999999999999999999842           346778888998889999999999987764

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=2.2e-11  Score=91.43  Aligned_cols=50  Identities=22%  Similarity=0.203  Sum_probs=44.7

Q ss_pred             CCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           66 IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        66 ~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      ..+.+.||||++.+.+|++++|||+||+.||.+|+.. ..+||.|+.++..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence            3457899999999999999999999999999999986 5789999988754

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.10  E-value=5.2e-09  Score=94.40  Aligned_cols=184  Identities=16%  Similarity=0.072  Sum_probs=152.5

Q ss_pred             CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhH
Q 041252          191 GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEI  270 (450)
Q Consensus       191 G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~  270 (450)
                      +..+.++.+|.+. +..++..|+.+|..+..          ...++.|+.+|.++++.+|..|+.+|..+..        
T Consensus        14 ~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   74 (201)
T ss_dssp             HHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred             cchHHHHHHhcCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            4578899999886 78999999999986543          4679999999999999999999999988732        


Q ss_pred             hhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhh
Q 041252          271 VSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEG  350 (450)
Q Consensus       271 ~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~  350 (450)
                         ...++.|+.+|.++ ++.++..++.+|..+..          ..+++.|+.+|.+.++.++..|+.+|..+..    
T Consensus        75 ---~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               24578889999886 68889999999988753          3478899999999999999999999998853    


Q ss_pred             HHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252          351 KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLC  430 (450)
Q Consensus       351 r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l  430 (450)
                             ...++.|++++.+.++.++..|+.+|..+..            ..+++.|..+++++ ++.+|..|...|..+
T Consensus       137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETG-TGFARKVAVNYLETH  196 (201)
T ss_dssp             -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence                   4678999999998889999999999988732            12567788888887 789999999998875


Q ss_pred             H
Q 041252          431 S  431 (450)
Q Consensus       431 s  431 (450)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.09  E-value=2.1e-11  Score=89.38  Aligned_cols=54  Identities=19%  Similarity=0.372  Sum_probs=47.9

Q ss_pred             CeeeCcCCCCCCCCC-------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252           68 SVFVCPISLEPMQDP-------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN  122 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dP-------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n  122 (450)
                      +++.||||.+.+.+|       ++++|||+|++.||.+|+.. +.+||.|+.++...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   62 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   62 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence            467899999999998       78999999999999999997 6789999999887776654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=4.9e-11  Score=88.82  Aligned_cols=51  Identities=18%  Similarity=0.343  Sum_probs=45.5

Q ss_pred             CCCCeeeCcCCCCCCCCC-------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           65 EIPSVFVCPISLEPMQDP-------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dP-------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      ..++.+.||||.+.+.+|       ++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            456778999999999998       88999999999999999997 6789999988753

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.07  E-value=1.2e-10  Score=88.86  Aligned_cols=55  Identities=18%  Similarity=0.235  Sum_probs=46.1

Q ss_pred             CCCCeeeCcCCCCCC--CCCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCC
Q 041252           65 EIPSVFVCPISLEPM--QDPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELWDDSV  119 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m--~dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l  119 (450)
                      ...+++.||||.+.+  .||++.+  |||+||+.||.+|+..+...||.||+++....+
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            456789999999998  4677766  999999999999998767889999999876543

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.05  E-value=1.2e-10  Score=89.12  Aligned_cols=57  Identities=21%  Similarity=0.394  Sum_probs=48.2

Q ss_pred             CCCCeeeCcCCCCCCCCC---eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252           65 EIPSVFVCPISLEPMQDP---VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN  122 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dP---v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n  122 (450)
                      .....+.||||++.|.+|   ++++|||+|++.||.+|+.. +.+||.|+.++....+.+|
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence            344578899999999977   45699999999999999986 5789999999987777665

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.99  E-value=1.3e-08  Score=96.62  Aligned_cols=198  Identities=12%  Similarity=0.013  Sum_probs=144.9

Q ss_pred             HhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh
Q 041252          188 VDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR  267 (450)
Q Consensus       188 ~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~  267 (450)
                      ...+.++.|+..|.+. +..++..|+.+|.++.          ..+.++.|+.+|.++++.+|..|+.+|..+.......
T Consensus        20 ~~~~~i~~L~~~L~~~-~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~   88 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDH-NSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE   88 (280)
T ss_dssp             HHTSCHHHHHHHTTCS-SHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred             HHHhhHHHHHHHHHcC-CHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence            3456799999999875 7889999999999875          2457899999999999999999999999885332211


Q ss_pred             hhHhhhhhHHHHHHH-HHhcCCCccchhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252          268 PEIVSSHRLLIGLMR-LVKNKRHPNGILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS  345 (450)
Q Consensus       268 ~~~~~~~g~l~~Lv~-lL~~~~~~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~  345 (450)
                            ..+++.|.. +++++ ++.++..++.+|.++.. ++..     ...+++.|+.+|.+.++.++..|+.+|..+.
T Consensus        89 ------~~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           89 ------DNVFNILNNMALNDK-SACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             ------HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             ------hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence                  123444543 34444 67889999999999873 2211     1235789999999999999999999998775


Q ss_pred             CChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHH
Q 041252          346 SLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAE  425 (450)
Q Consensus       346 ~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~  425 (450)
                      .           ..+++.|++++.+.+..++..|+.+|..+....+          .+++.|..++.++ ++.+|..|..
T Consensus       157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----------~~~~~L~~~l~d~-~~~vR~~A~~  214 (280)
T 1oyz_A          157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS----------DIRDCFVEMLQDK-NEEVRIEAII  214 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH----------HHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH----------HHHHHHHHHhcCC-CHHHHHHHHH
Confidence            3           3589999999999899999999999988853321          2345555665554 5666666666


Q ss_pred             HHHHH
Q 041252          426 LLKLC  430 (450)
Q Consensus       426 lL~~l  430 (450)
                      .|..+
T Consensus       215 aL~~~  219 (280)
T 1oyz_A          215 GLSYR  219 (280)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            66554

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.95  E-value=5.1e-10  Score=83.06  Aligned_cols=48  Identities=23%  Similarity=0.335  Sum_probs=42.4

Q ss_pred             CeeeCcCCCCCCCCC-eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           68 SVFVCPISLEPMQDP-VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dP-v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      ....||||.+.+.+| ++++|||+||+.||.+|+.. +.+||.|+.++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence            356799999999998 67899999999999999986 5789999988753

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.92  E-value=7e-10  Score=78.58  Aligned_cols=47  Identities=26%  Similarity=0.400  Sum_probs=41.5

Q ss_pred             CeeeCcCCCCCCCC----CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           68 SVFVCPISLEPMQD----PVTLCTGQTYERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        68 ~~~~Cpi~~~~m~d----Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      +++.||||.+.+.+    |++++|||+|++.||.+|+..+ .+||.|+.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            45789999999977    7889999999999999999974 88999998764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.91  E-value=2.1e-08  Score=110.50  Aligned_cols=277  Identities=14%  Similarity=0.094  Sum_probs=191.7

Q ss_pred             hhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHH----hhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC
Q 041252          147 VQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMV----DEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD  222 (450)
Q Consensus       147 ~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~----~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~  222 (450)
                      +...++.++..+.+.+...+..|+..|..++...+..-..-.    -...++.++..+++. +..++..|+.+|.++...
T Consensus       126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~  204 (852)
T 4fdd_A          126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIIS  204 (852)
T ss_dssp             CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTT
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhc
Confidence            445688889999888888999999999999976432211000    123467777777764 788999999999886644


Q ss_pred             chhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHH
Q 041252          223 SESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRS  302 (450)
Q Consensus       223 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~  302 (450)
                      ......-.-...++.+...+.+++.++|..|+.+|..|+......-. -.-.++++.++.++.+. ++.++..|+..+.+
T Consensus       205 ~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~-~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~  282 (852)
T 4fdd_A          205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL-PHMHNIVEYMLQRTQDQ-DENVALEACEFWLT  282 (852)
T ss_dssp             TCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG-GGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH-HHHHHHHHHHHHHccCC-cHHHHHHHHHHHHH
Confidence            22111111135788888888889999999999999999865432110 01135777888887775 67789999999999


Q ss_pred             hccChHHHHHHHh--cCCHHHHHHhc-----------CC-----------CChhHHHHHHHHHHHhcCChhhHHHHhccC
Q 041252          303 ICLLNEVRSLVVS--IGAVPQLVELL-----------PS-----------LDPDCLQLALCILDALSSLPEGKLALKDCA  358 (450)
Q Consensus       303 Ls~~~~~~~~iv~--~G~v~~Lv~lL-----------~~-----------~~~~~~~~al~~L~~L~~~~e~r~~i~~~~  358 (450)
                      ++.....+..+..  ...+|.++..+           .+           .+-.++..|..+|..|+....  ..+..  
T Consensus       283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~--  358 (852)
T 4fdd_A          283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP--  358 (852)
T ss_dssp             HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH--
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH--
Confidence            9866544332211  24567777776           22           122468888899998886432  12332  


Q ss_pred             CChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          359 NTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       359 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      ..++.+.+.+.+.+...++.|+.+|.+++....+.. . -.-.++++.|+..+.+. ++.+|..|...+..++..
T Consensus       359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~-~-~~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~  430 (852)
T 4fdd_A          359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM-I-PYLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHW  430 (852)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH-G-GGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH-H-HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence            467788888888889999999999999998765321 1 12246788888888776 799999999998887765

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=2.7e-10  Score=85.17  Aligned_cols=52  Identities=17%  Similarity=0.334  Sum_probs=45.7

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCC
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDS  118 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~  118 (450)
                      .+.+.+.||||.+.+.+ ++++|||+||+.||.+|+.. ..+||.|+.++...+
T Consensus        11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred             cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence            45567899999999999 99999999999999999985 788999998876543

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.90  E-value=3.1e-10  Score=95.89  Aligned_cols=55  Identities=18%  Similarity=0.353  Sum_probs=48.3

Q ss_pred             CCeeeCcCCCCCCCCC-------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252           67 PSVFVCPISLEPMQDP-------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN  122 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dP-------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n  122 (450)
                      ++++.||||.+.|.+|       ++++|||+||+.||.+|+.. ..+||.|++.+....+.++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence            4678999999999999       99999999999999999986 5689999999877665443

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.89  E-value=3.9e-10  Score=80.37  Aligned_cols=46  Identities=13%  Similarity=0.023  Sum_probs=40.6

Q ss_pred             CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      .+.+.||||.+.+.+|++++|||+||+.||.+|    ...||.|+.++..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence            356889999999999999999999999999884    5689999988653

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.89  E-value=1.1e-09  Score=77.51  Aligned_cols=47  Identities=19%  Similarity=0.412  Sum_probs=41.7

Q ss_pred             CCeeeCcCCCCCCCC---CeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252           67 PSVFVCPISLEPMQD---PVTLC-TGQTYERSNILKWFSLGRYTCPTTMQEL  114 (450)
Q Consensus        67 p~~~~Cpi~~~~m~d---Pv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l  114 (450)
                      .+...||||.+.+.+   +++++ |||.|++.||.+|+.. +.+||.|+.++
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~   53 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence            456789999999998   88887 9999999999999986 67899999875

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=1.3e-09  Score=82.31  Aligned_cols=51  Identities=22%  Similarity=0.488  Sum_probs=43.8

Q ss_pred             CCCCeeeCcCCCCCCCCCeeC---CCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           65 EIPSVFVCPISLEPMQDPVTL---CTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~---~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      +...+..||||++.|.+|..+   +|||+|++.||.+|+.. +.+||.|+.++..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence            445678899999999988654   99999999999999997 5689999998764

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.87  E-value=2.2e-09  Score=79.82  Aligned_cols=51  Identities=18%  Similarity=0.298  Sum_probs=42.9

Q ss_pred             CCCCeeeCcCCCCCCC---CCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           65 EIPSVFVCPISLEPMQ---DPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~---dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      .......||||.+.+.   +|++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA   63 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence            3445678999999885   4678999999999999999997 5679999988754

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.86  E-value=2.7e-09  Score=87.78  Aligned_cols=62  Identities=13%  Similarity=0.249  Sum_probs=48.0

Q ss_pred             HHHHHhh-hccCCCCeeeCcCCCCCCCCCe------------------eCCCCCcccHHHHHHHHhc----CCCCCCCcC
Q 041252           55 KKMIAEL-DLAEIPSVFVCPISLEPMQDPV------------------TLCTGQTYERSNILKWFSL----GRYTCPTTM  111 (450)
Q Consensus        55 ~~~~~~~-~~~~~p~~~~Cpi~~~~m~dPv------------------~~~~g~ty~r~~I~~~~~~----~~~~cP~~~  111 (450)
                      ++++... +....+.+..||||++.|.+|+                  +++|||.|++.||.+|+..    .+.+||.|+
T Consensus        10 ~~~i~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR   89 (114)
T 1v87_A           10 EQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCK   89 (114)
T ss_dssp             HHHHHHHEEECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTC
T ss_pred             HHHHHHHHHhccCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCC
Confidence            3444442 3344556779999999998886                  7899999999999999963    356899999


Q ss_pred             CcCCC
Q 041252          112 QELWD  116 (450)
Q Consensus       112 ~~l~~  116 (450)
                      ..+..
T Consensus        90 ~~~~~   94 (114)
T 1v87_A           90 TIYGE   94 (114)
T ss_dssp             CBSSS
T ss_pred             CccCC
Confidence            88754

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.85  E-value=2.5e-08  Score=107.20  Aligned_cols=194  Identities=15%  Similarity=0.154  Sum_probs=144.4

Q ss_pred             ChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHH-HhcCCCHHHHHHHHHHHHHHhccC-CChhh
Q 041252          192 GVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD-MLNEGSVETKINCTRLIEKLMEEK-DFRPE  269 (450)
Q Consensus       192 ~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~aa~~L~~La~~~-~~~~~  269 (450)
                      .|.+++..|++. +...+..|+.+|.+|+.+++++..+...++|..++. +|...+.++|..|+++|++|+... .....
T Consensus        35 ~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            456677788875 789999999999999998899999999999887655 577789999999999999998543 22333


Q ss_pred             HhhhhhHHHHHHHHHhcC------CCc--------------cchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCC
Q 041252          270 IVSSHRLLIGLMRLVKNK------RHP--------------NGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPS  328 (450)
Q Consensus       270 ~~~~~g~l~~Lv~lL~~~------~~~--------------~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~  328 (450)
                      .+...|++++|..+++..      ..+              .+..+++.+|++|| .+.+....+.+.|+++.|+.+|.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            456778999999988631      000              12235778999999 566677788889999999999833


Q ss_pred             ---CChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHH--HHHHHhcCChHHHHHHHHHHHHhc
Q 041252          329 ---LDPDCLQLALCILDALSSL-PEGKLALKDCANTIPN--TVRLLMRVSEDCTQYALSILWSIC  387 (450)
Q Consensus       329 ---~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~--Lv~lL~~~s~~~~e~A~~~L~~L~  387 (450)
                         ...++...|+.+|..|+.. ++....+.+ .+....  ++-.+...+...+..++++|+|+.
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-DQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-CCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-cchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence               3568999999999999965 666677776 443322  222223445555677889999974

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.85  E-value=3.7e-08  Score=108.49  Aligned_cols=270  Identities=11%  Similarity=0.047  Sum_probs=180.8

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      .++.++..+.+.+.++|..|++.|..++...+..-.... .+.++.++.++++. +..++..|+..+..++.....+..+
T Consensus       216 ~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~  293 (852)
T 4fdd_A          216 FIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVL  293 (852)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHH
Confidence            345566666777888999999999999976553211111 14577788888765 6789999999999988765444432


Q ss_pred             cC--CCchHHHHHHh-----------cC-----------CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh
Q 041252          230 MQ--PAKVSLLVDML-----------NE-----------GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK  285 (450)
Q Consensus       230 ~~--~g~i~~Lv~lL-----------~~-----------~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~  285 (450)
                      ..  ...++.++..+           ..           .+..+|..|+.+|..|+....  ..++  ..+++.+..++.
T Consensus       294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~--~~l~~~l~~~l~  369 (852)
T 4fdd_A          294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL--PHILPLLKELLF  369 (852)
T ss_dssp             TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH--HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH--HHHHHHHHHHhc
Confidence            11  23456666655           22           112358889999999975432  1121  246777777777


Q ss_pred             cCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhh--HHHHhccCCChHH
Q 041252          286 NKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEG--KLALKDCANTIPN  363 (450)
Q Consensus       286 ~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~--r~~i~~~~g~i~~  363 (450)
                      +. ++..+..|+.+|.+++........-.-.++++.++.++.+.++.++..|+++|.+++..-..  .....  ...++.
T Consensus       370 ~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~  446 (852)
T 4fdd_A          370 HH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTE  446 (852)
T ss_dssp             CS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHH
T ss_pred             CC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHH
Confidence            75 68899999999999986543222112246789999999999999999999999999864211  11111  256788


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252          364 TVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       364 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls  431 (450)
                      |++.+...++.+++.|+.+|.+++.........  .-.++++.|+.+++.. .......+...+..+.
T Consensus       447 L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~--~l~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l~  511 (852)
T 4fdd_A          447 LLKRILDSNKRVQEAACSAFATLEEEACTELVP--YLAYILDTLVFAFSKY-QHKNLLILYDAIGTLA  511 (852)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG--GHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh--HHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence            888888888999999999999998765432211  1246777888888765 3444444445554443

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.84  E-value=1.5e-09  Score=85.48  Aligned_cols=50  Identities=16%  Similarity=0.316  Sum_probs=43.8

Q ss_pred             CCCeeeCcCCCCCCCC---CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           66 IPSVFVCPISLEPMQD---PVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        66 ~p~~~~Cpi~~~~m~d---Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      ...+..||||.+.|.+   +++++|||.|++.||.+|+.. +.+||.|+.++..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence            4467889999999988   888999999999999999986 6789999988754

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.83  E-value=1.2e-08  Score=109.69  Aligned_cols=193  Identities=11%  Similarity=0.124  Sum_probs=142.0

Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHH-HHHhcCCCccchhHHHHHHHHhcc--ChHHH
Q 041252          234 KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLM-RLVKNKRHPNGILPGLSLLRSICL--LNEVR  310 (450)
Q Consensus       234 ~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv-~lL~~~~~~~~~~~al~aL~~Ls~--~~~~~  310 (450)
                      .|.++++.|++.+++.|..|+.+|.+|+.+...+ ..+...+++..++ .+|.+. +.+++.+|+++|+||+.  ..+.+
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~-~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCR-KLLLREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHH-HHHHHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHH-HHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHH
Confidence            4667888899999999999999999998754444 4455566666654 567665 68899999999999994  46789


Q ss_pred             HHHHhcCCHHHHHHhcCCCC---------------------hhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHH
Q 041252          311 SLVVSIGAVPQLVELLPSLD---------------------PDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLL  368 (450)
Q Consensus       311 ~~iv~~G~v~~Lv~lL~~~~---------------------~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL  368 (450)
                      ..+++.|++++|..+|+...                     ..+.+.++.+|.+||.. ++....+.. .++++.|+..|
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l~~~L  191 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRLLFRL  191 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHHHHHH
Confidence            99999999999999984210                     13556788999999854 666777877 79999999998


Q ss_pred             hcC---ChHHHHHHHHHHHHhcccCchhHHHHHHhcChH---HHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252          369 MRV---SEDCTQYALSILWSICKIAPEECSSAAVDAGLA---AKLFLVIQSGCNPVLKQRSAELLKLCSL  432 (450)
Q Consensus       369 ~~~---s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i---~~L~~ll~s~~~~~~k~~A~~lL~~ls~  432 (450)
                      ...   +..+...|+.+|..++..+++ ..+.+.+.|..   ..++.+..+. . ..+..++.+|.++..
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~-~~~~i~~~~~~~~~~~ll~~~~~~-~-~~~~la~giL~Ni~~  258 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSEDNLK-VGQAITDDQETHVYDVLLKLATGT-D-PRAVMACGVLHNVFT  258 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHTCCSSCHHHHHHHHHHSS-C-TTHHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhccCHH-HHHHHHhcchHHHHHHHHHHhcCC-c-HHHHHHHHHHHhHhh
Confidence            653   357899999999999998863 44555565542   2333333333 3 345666677776543

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.7e-09  Score=81.91  Aligned_cols=49  Identities=14%  Similarity=0.322  Sum_probs=43.2

Q ss_pred             CCeeeCcCCCCCCCCC---eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           67 PSVFVCPISLEPMQDP---VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dP---v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      .+...||||++.+.+|   ++++|||.|++.||.+|+.. +.+||.|+.++..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence            4567899999999988   67899999999999999987 5789999988754

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.77  E-value=1.3e-06  Score=92.21  Aligned_cols=265  Identities=13%  Similarity=0.088  Sum_probs=157.0

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      ....++..+.+.+...|.-+.-.+..++..+++..     .-.+..+.+-|.+. +..++..|+.+|.++... +.-   
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~-n~~ir~~AL~~L~~i~~~-~~~---  119 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDP-NPLIRALAVRTMGCIRVD-KIT---  119 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSS-SHHHHHHHHHHHHTCCSG-GGH---
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCC-CHHHHHHHHHHHHcCChH-HHH---
Confidence            45566666666666666666666666665444321     11245555666553 566777777777766421 111   


Q ss_pred             cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH-
Q 041252          230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE-  308 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~-  308 (450)
                        ...++.+..+|.+.++.+|..|+.++..+...++.   .+...++++.|..+|.++ ++.++.+|+.+|..++.... 
T Consensus       120 --~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~  193 (591)
T 2vgl_B          120 --EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS-NPMVVANAVAALSEISESHPN  193 (591)
T ss_dssp             --HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS-CHHHHHHHHHHHHHHTTSCCS
T ss_pred             --HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhhCCC
Confidence              22355666777777777777777777777653322   223345667777777654 56677777777777764321 


Q ss_pred             ---------HHHHHHh----------------------------cCCHHHHHHhcCCCChhHHHHHHHHHHHhcC----C
Q 041252          309 ---------VRSLVVS----------------------------IGAVPQLVELLPSLDPDCLQLALCILDALSS----L  347 (450)
Q Consensus       309 ---------~~~~iv~----------------------------~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~----~  347 (450)
                               .-..++.                            ...++.+..+|++.++.++..|+.++..+..    +
T Consensus       194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~  273 (591)
T 2vgl_B          194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKD  273 (591)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBT
T ss_pred             ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCC
Confidence                     0111111                            2356777778888889999999999999874    3


Q ss_pred             hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCch-----------------hHHHHHHh-------c--
Q 041252          348 PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPE-----------------ECSSAAVD-------A--  401 (450)
Q Consensus       348 ~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-----------------~~~~~~~~-------~--  401 (450)
                      ++....+..  ...+.|+.++ +.++.++..|+.+|..+....++                 ..+..+.+       .  
T Consensus       274 ~~~~~~~~~--~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n  350 (591)
T 2vgl_B          274 SDYYNMLLK--KLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN  350 (591)
T ss_dssp             TBSHHHHHH--HTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST
T ss_pred             HHHHHHHHH--HHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh
Confidence            454444443  4567777665 46677888888888777642211                 11222221       1  


Q ss_pred             --ChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252          402 --GLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNY  434 (450)
Q Consensus       402 --G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~  434 (450)
                        .+++.|...+.+. +...|+.+...+..++..+
T Consensus       351 v~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~  384 (591)
T 2vgl_B          351 IAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKV  384 (591)
T ss_dssp             HHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhC
Confidence              1333444444444 6777888877777776653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.70  E-value=4.4e-07  Score=94.73  Aligned_cols=264  Identities=11%  Similarity=0.096  Sum_probs=176.5

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM  230 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~  230 (450)
                      ++.+...+.+.+..+|..|+..|..++...+..  . ...-.++.+..+..+. +...+..|+.++..+...-...   .
T Consensus        89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~~~-~~~~R~~a~~~l~~~~~~~~~~---~  161 (588)
T 1b3u_A           89 LPPLESLATVEETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGD-WFTSRTSACGLFSVCYPRVSSA---V  161 (588)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCS-SHHHHHHHGGGHHHHTTTSCHH---H
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhcCHH---H
Confidence            444444455667789999999999998654321  1 1222356666666654 6677888888887765432111   1


Q ss_pred             CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHH
Q 041252          231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR  310 (450)
Q Consensus       231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~  310 (450)
                      ....++.+..++...++.+|..|+.+|..++..-...   .....+++.+..+++++ ++.++..|+.+|..++..-.. 
T Consensus       162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~-  236 (588)
T 1b3u_A          162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLLPQ-  236 (588)
T ss_dssp             HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHSCH-
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCH-
Confidence            2345778888888889999999999999997543211   11245778888888876 578889999999988732111 


Q ss_pred             HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252          311 SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA  390 (450)
Q Consensus       311 ~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  390 (450)
                       .......+|.+..++.+.+..++..++.+|..++..... ..+.  ...++.+++++...++.+++.|+.+|..++...
T Consensus       237 -~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  312 (588)
T 1b3u_A          237 -EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-EITK--TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-HHHH--HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-ccch--hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Confidence             112234778888889888899999999999999854211 1222  357889999999888999999999999888755


Q ss_pred             chhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252          391 PEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       391 ~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls  431 (450)
                      +........-..+++.+..++++. ++.+|..+...|..+.
T Consensus       313 ~~~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~  352 (588)
T 1b3u_A          313 SADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLS  352 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGH
T ss_pred             ChhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence            432111112234556666666554 5666666665554443

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.70  E-value=3.1e-09  Score=80.24  Aligned_cols=44  Identities=14%  Similarity=0.100  Sum_probs=39.8

Q ss_pred             CeeeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           68 SVFVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      +++.||||.+.+.+|++++|||+ ||+.|+.+|     ..||.|+.++..
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            45789999999999999999999 999999999     779999988753

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.69  E-value=8.6e-09  Score=101.34  Aligned_cols=49  Identities=20%  Similarity=0.243  Sum_probs=44.4

Q ss_pred             CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           68 SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      ....||||.+.+.+|++++|||+||+.||.+|+..+..+||.||.++..
T Consensus       331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            3578999999999999999999999999999998557889999998764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.69  E-value=2.4e-07  Score=96.78  Aligned_cols=264  Identities=14%  Similarity=0.096  Sum_probs=173.8

Q ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccC
Q 041252          152 SELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQ  231 (450)
Q Consensus       152 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~  231 (450)
                      +.+...+++.+..+|..|+..|..++......   ......+|.+..++... +..++..|+.+|..++..-...  ...
T Consensus       167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~  240 (588)
T 1b3u_A          167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLLPQE--DLE  240 (588)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHSCHH--HHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCHH--HHH
Confidence            33445556777889999999999998643211   12345678888888765 6788888888887765321110  112


Q ss_pred             CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC--hHH
Q 041252          232 PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL--NEV  309 (450)
Q Consensus       232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~--~~~  309 (450)
                      ...++.+..++.+.+..+|..|+.+|..++..-..  .. ....+++.++.++++. ++.++..++.+|..++..  ++.
T Consensus       241 ~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~  316 (588)
T 1b3u_A          241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EI-TKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HH-HHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--cc-chhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhChhh
Confidence            34678888888888999999999999999743211  11 1235688899998876 688899999999988732  222


Q ss_pred             HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 041252          310 RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKI  389 (450)
Q Consensus       310 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~  389 (450)
                      +....-...+|.+..++.+.+..++..++.+|..++..-. .....  ...+|.+..++...++.++..|+.+|..++..
T Consensus       317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~~--~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~  393 (588)
T 1b3u_A          317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNTI--EHLLPLFLAQLKDECPEVRLNIISNLDCVNEV  393 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHHH--HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHHH--HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence            2212234567888888988889999999998888875321 12222  24678888888877788888888887777654


Q ss_pred             CchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          390 APEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       390 ~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      ...+    ......++.|..++.+. +..+|..+...+..+...
T Consensus       394 ~~~~----~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~  432 (588)
T 1b3u_A          394 IGIR----QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQ  432 (588)
T ss_dssp             SCHH----HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHH
T ss_pred             cCHH----HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH
Confidence            3211    11123455555555443 556666666665555443

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.68  E-value=2.6e-07  Score=93.43  Aligned_cols=278  Identities=11%  Similarity=0.031  Sum_probs=183.8

Q ss_pred             hhcHHHHHHHhhcc--chHHHHHHHHHHHHHHHHc-HHHHHHHHhhCChHHHHhhhCCCC-ChhhHHHHHHHHHhcCCC-
Q 041252          148 QGRASELLGTLKKV--KGQARVQALKELHQIAAAH-ASARKTMVDEGGVALISSLLGPFT-SHAVGSEAVGVLVNLTLD-  222 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~~-  222 (450)
                      ...++.++..+.+.  +...+..|+..|..++.+. +..-.. .-...++.++..|.... +..++..|+.++.++... 
T Consensus       127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~  205 (462)
T 1ibr_B          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (462)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            45678888888887  7889999999999998753 111000 01135677888887653 578999999999885432 


Q ss_pred             chhhh-hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh-hhHhhhhhHHHHHHHHHhcCCCccchhHHHHHH
Q 041252          223 SESKT-NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR-PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL  300 (450)
Q Consensus       223 ~~~k~-~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~-~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL  300 (450)
                      +++.. .....-.++.+...+.+.+.++|..++.+|..++...... ...+. ..+++.++..+++. ++.++..++..+
T Consensus       206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~-~~~v~~~a~~~l  283 (462)
T 1ibr_B          206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD-IDEVALQGIEFW  283 (462)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCS-SHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHH
Confidence            11110 0001113566666677789999999999999997543211 11111 15677777777765 677888999988


Q ss_pred             HHhccChHHHHH------------------HHh---cCCHHHHHHhcCCC-------ChhHHHHHHHHHHHhcCChhhHH
Q 041252          301 RSICLLNEVRSL------------------VVS---IGAVPQLVELLPSL-------DPDCLQLALCILDALSSLPEGKL  352 (450)
Q Consensus       301 ~~Ls~~~~~~~~------------------iv~---~G~v~~Lv~lL~~~-------~~~~~~~al~~L~~L~~~~e~r~  352 (450)
                      ..++........                  +++   ...+|.++..|...       +..++..|..+|..|+..-.  .
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~  361 (462)
T 1ibr_B          284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D  361 (462)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--T
T ss_pred             HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--H
Confidence            888754311110                  111   23566777777432       34688899999998886422  1


Q ss_pred             HHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252          353 ALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL  432 (450)
Q Consensus       353 ~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~  432 (450)
                      .+..  ..++.+.+.+.+.+...++.|+.+|..++.....+.... .-..+++.|+..+.+. ++.+|..|...|..+..
T Consensus       362 ~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          362 DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             THHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            2332  466777778877788999999999999987543121111 1156889999999876 79999999999988887


Q ss_pred             hc
Q 041252          433 NY  434 (450)
Q Consensus       433 ~~  434 (450)
                      ..
T Consensus       438 ~~  439 (462)
T 1ibr_B          438 LL  439 (462)
T ss_dssp             HG
T ss_pred             hc
Confidence            64

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.61  E-value=1.2e-06  Score=92.55  Aligned_cols=267  Identities=16%  Similarity=0.153  Sum_probs=177.8

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh-
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT-  227 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~-  227 (450)
                      ..++.+...|.+.++.+|..|+.+|..+...+++   .+.+.+.++.|..+|.+. +..++..|+.+|..++.+..... 
T Consensus       121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~~~~  196 (591)
T 2vgl_B          121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS-NPMVVANAVAALSEISESHPNSNL  196 (591)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS-CHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhhCCCccc
Confidence            3456688888888899999999999999876553   333457789999999865 78999999999999887643221 


Q ss_pred             hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc--
Q 041252          228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL--  305 (450)
Q Consensus       228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~--  305 (450)
                      .-...+.+..|+..+...++-.+.....+|..+...++  .   ....+++.+..++++. ++.++..|++++..+..  
T Consensus       197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~--~---~~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~  270 (591)
T 2vgl_B          197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD--R---EAQSICERVTPRLSHA-NSAVVLSAVKVLMKFLELL  270 (591)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH--H---HHHHHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSC
T ss_pred             hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh--H---HHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhcc
Confidence            11124567788888887888888777777666643221  1   1245677777777765 57788899999998863  


Q ss_pred             --ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hh------------------h-HHHH------hcc
Q 041252          306 --LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PE------------------G-KLAL------KDC  357 (450)
Q Consensus       306 --~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e------------------~-r~~i------~~~  357 (450)
                        +++....+ -..+.++|+.++. +++.++..|+.+|..+... ++                  - +.++      .. 
T Consensus       271 ~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~-  347 (591)
T 2vgl_B          271 PKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLAS-  347 (591)
T ss_dssp             CBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCC-
T ss_pred             CCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCC-
Confidence              22222222 2345577777664 6778888888888777631 10                  1 1111      12 


Q ss_pred             CCChHHHH----HHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          358 ANTIPNTV----RLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       358 ~g~i~~Lv----~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      ...+..++    +.+...+...+..++.++..++...+..      ....++.|+.++... .+.+++.++..++.+-..
T Consensus       348 ~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~------~~~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~  420 (591)
T 2vgl_B          348 QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS------AERCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRK  420 (591)
T ss_dssp             SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH------HHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHH
Confidence            23344444    4444557888999999999998876422      134678889999876 566666666666665554


Q ss_pred             cC
Q 041252          434 YT  435 (450)
Q Consensus       434 ~~  435 (450)
                      +.
T Consensus       421 ~p  422 (591)
T 2vgl_B          421 YP  422 (591)
T ss_dssp             SC
T ss_pred             Cc
Confidence            44

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.60  E-value=6.9e-09  Score=87.48  Aligned_cols=55  Identities=18%  Similarity=0.353  Sum_probs=48.6

Q ss_pred             CCeeeCcCCCCCCCCC-------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252           67 PSVFVCPISLEPMQDP-------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN  122 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dP-------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n  122 (450)
                      ++.+.||||++.+.+|       ++++|||+|+..||.+|+.. +.+||.|+.++...++.|+
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~  131 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI  131 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence            5678899999999988       88999999999999999997 6789999999887776654

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=2.6e-08  Score=75.38  Aligned_cols=44  Identities=14%  Similarity=0.104  Sum_probs=38.6

Q ss_pred             CeeeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           68 SVFVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      +.+.||||.+.+.+|++++|||+ ||+.|+.+     ...||.|+.++..
T Consensus        24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred             CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence            45789999999999999999999 99999964     3679999998754

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.54  E-value=1.4e-08  Score=80.45  Aligned_cols=46  Identities=13%  Similarity=0.223  Sum_probs=38.9

Q ss_pred             CeeeCcCCCCCCCCCeeC---CCCCcccHHHHHHHHhc----C---CCCCCC--cCCc
Q 041252           68 SVFVCPISLEPMQDPVTL---CTGQTYERSNILKWFSL----G---RYTCPT--TMQE  113 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~---~~g~ty~r~~I~~~~~~----~---~~~cP~--~~~~  113 (450)
                      +.|.||||.+.+.+|+++   +|||+||+.|+.+|+..    |   ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            578999999999999865   69999999999999863    3   246999  8876

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=4e-08  Score=75.49  Aligned_cols=47  Identities=17%  Similarity=0.302  Sum_probs=39.1

Q ss_pred             eeeCcCCCCCCCC--------------CeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           69 VFVCPISLEPMQD--------------PVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        69 ~~~Cpi~~~~m~d--------------Pv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      +-.|+||++.|.+              ++++ +|||.|.+.||.+|+.. +.+||.||.++..
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~   76 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV   76 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence            4569999999987              4455 59999999999999997 5799999988653

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.43  E-value=1.1e-07  Score=69.38  Aligned_cols=48  Identities=17%  Similarity=0.128  Sum_probs=42.4

Q ss_pred             CCeeeCcCCCCCCCCCeeC--CCCCc-ccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           67 PSVFVCPISLEPMQDPVTL--CTGQT-YERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dPv~~--~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      +++..|+||.+-.+|++++  +|||. ||..|+.+|+.. +..||.||+++.
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence            3456899999999999987  99999 899999999986 578999998764

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.40  E-value=2.3e-05  Score=83.16  Aligned_cols=252  Identities=17%  Similarity=0.115  Sum_probs=176.7

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh-hhhc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES-KTNL  229 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~-k~~i  229 (450)
                      ++.+...|++.++.+|..|+.++.++...+++.-     .+.++.+..+|... +..++..|+.+|..+...+.. ...+
T Consensus       144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~~~~~  217 (618)
T 1w63_A          144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDMLAHF  217 (618)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHHHHHH
Confidence            5667778888889999999999999998776432     25678888888765 789999999999998865422 1122


Q ss_pred             cCCCchHHHHHHhcC---------------CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC-----CC
Q 041252          230 MQPAKVSLLVDMLNE---------------GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK-----RH  289 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~~---------------~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~-----~~  289 (450)
                        ...++.++.+|..               .++-.+.....+|..++..+...     ....++.|..++...     .+
T Consensus       218 --~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-----~~~~~~~L~~l~~~~~~~~~~~  290 (618)
T 1w63_A          218 --RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-----SEAMNDILAQVATNTETSKNVG  290 (618)
T ss_dssp             --HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH-----HHTTHHHHHHHHHTSCCSSTHH
T ss_pred             --HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHHHhccccccchH
Confidence              2567888877753               37888888888888887543211     122345555555421     12


Q ss_pred             ccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh
Q 041252          290 PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM  369 (450)
Q Consensus       290 ~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~  369 (450)
                      ..+.-.++.++..+...+..+.     .++..|..+|.+.++.++..|+.+|..++..   ...+..  .....++..+.
T Consensus       291 ~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~---~p~~~~--~~~~~i~~~l~  360 (618)
T 1w63_A          291 NAILYETVLTIMDIKSESGLRV-----LAINILGRFLLNNDKNIRYVALTSLLKTVQT---DHNAVQ--RHRSTIVDCLK  360 (618)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH---HHHHHG--GGHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh---CHHHHH--HHHHHHHHHcc
Confidence            3456678888888766543322     3567888899888999999999999998853   122332  35678888888


Q ss_pred             cCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252          370 RVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNY  434 (450)
Q Consensus       370 ~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~  434 (450)
                      ..+..++..|+.+|..++....  . ..     ++..|+..+.+. +...|..+...+..++..+
T Consensus       361 d~d~~Ir~~alelL~~l~~~~n--v-~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~  416 (618)
T 1w63_A          361 DLDVSIKRRAMELSFALVNGNN--I-RG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKY  416 (618)
T ss_dssp             SSCHHHHHHHHHHHHHHCCSSS--T-HH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSS
T ss_pred             CCChhHHHHHHHHHHHHccccc--H-HH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHh
Confidence            8888999999999999987653  2 12     246666666665 6788888888888877764

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.39  E-value=2.2e-07  Score=74.92  Aligned_cols=46  Identities=22%  Similarity=0.339  Sum_probs=39.7

Q ss_pred             eeeCcCCCCCCCCC------------------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           69 VFVCPISLEPMQDP------------------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        69 ~~~Cpi~~~~m~dP------------------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      +-.|+||.+.|.+|                  +.++|||.|.+.||.+|+.. +.+||.|+.++.
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            45699999999987                  34789999999999999997 788999998753

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.37  E-value=1.5e-07  Score=68.47  Aligned_cols=46  Identities=15%  Similarity=0.166  Sum_probs=41.3

Q ss_pred             eeeCcCCCCCCCCCeeC--CCCCc-ccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           69 VFVCPISLEPMQDPVTL--CTGQT-YERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~--~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      ...|+||.+-.+||+++  +|||. ||+.|+.+|+.. +..||.||+++.
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   55 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ   55 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred             CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence            46799999999999988  99999 999999999986 578999998864

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.33  E-value=2.1e-05  Score=86.07  Aligned_cols=274  Identities=14%  Similarity=0.076  Sum_probs=177.5

Q ss_pred             HHHHHHHhhcc--chHHHHHHHHHHHHHHHHcHHH-HHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhh
Q 041252          151 ASELLGTLKKV--KGQARVQALKELHQIAAAHASA-RKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESK  226 (450)
Q Consensus       151 i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k  226 (450)
                      ++.++..+.+.  +..+|..|+++|..++..-..+ .........++.+...+... +.+++..++.+|..+.... ..-
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~  252 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHH
Confidence            44455556655  5678999999998876421111 00011112466667776554 6788888999888866422 111


Q ss_pred             hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC------------------ChhhHhh--hhhHHHHHHHHHhc
Q 041252          227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD------------------FRPEIVS--SHRLLIGLMRLVKN  286 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~------------------~~~~~~~--~~g~l~~Lv~lL~~  286 (450)
                      ...+....++.++..+.+.+.+++..|..++..++....                  .......  -..+++.++..+..
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~  332 (876)
T 1qgr_A          253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  332 (876)
T ss_dssp             HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhc
Confidence            112234678888888888889999999998888864310                  0001111  13467777777753


Q ss_pred             ------CCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCh--hhHHHHhccC
Q 041252          287 ------KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLP--EGKLALKDCA  358 (450)
Q Consensus       287 ------~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~--e~r~~i~~~~  358 (450)
                            ..+..++..++.+|..++..-..  .++ ...++.+...+.+.+..+++.|+.+|..++...  +.......  
T Consensus       333 ~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~--  407 (876)
T 1qgr_A          333 QDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI--  407 (876)
T ss_dssp             CCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHH--
Confidence                  12456778888999888743221  122 245667778888889999999999999999752  33333333  


Q ss_pred             CChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhH-HHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          359 NTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEEC-SSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       359 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~-~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      ..++.++..+...++.++..|+.+|.+++...+... .... -..+++.|+..+.+.  +.++..|..+|..+...
T Consensus       408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence            578999999988889999999999999987654211 0011 124667777777653  77888888888877665

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.31  E-value=2.4e-05  Score=85.60  Aligned_cols=276  Identities=12%  Similarity=0.033  Sum_probs=179.9

Q ss_pred             hhcHHHHHHHhhcc--chHHHHHHHHHHHHHHHHcHHHHHHHHh--hCChHHHHhhhCCCC-ChhhHHHHHHHHHhcCCC
Q 041252          148 QGRASELLGTLKKV--KGQARVQALKELHQIAAAHASARKTMVD--EGGVALISSLLGPFT-SHAVGSEAVGVLVNLTLD  222 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~~  222 (450)
                      ...++.++..+.+.  +...|..++..|..++..-.  ...+..  ...++.+...+.... +..++..|+.+|.++...
T Consensus       127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~  204 (876)
T 1qgr_A          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (876)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            45677888888887  78899999999999986521  111211  234566777776542 467889999999886532


Q ss_pred             -chhh-hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh-hhHhhhhhHHHHHHHHHhcCCCccchhHHHHH
Q 041252          223 -SESK-TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR-PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSL  299 (450)
Q Consensus       223 -~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~-~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~a  299 (450)
                       +.+- ........++.+...+.+.+.++|..+..+|..++...... ...+ ...+++.++..+.+. ++.++..++..
T Consensus       205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~-~~~v~~~al~~  282 (876)
T 1qgr_A          205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSD-IDEVALQGIEF  282 (876)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCS-SHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence             1111 00001124677777777778999999999999997543221 1111 125667777766654 56788888888


Q ss_pred             HHHhccChHH----------------------HHHHHhcCCHHHHHHhcCC-------CChhHHHHHHHHHHHhcCChhh
Q 041252          300 LRSICLLNEV----------------------RSLVVSIGAVPQLVELLPS-------LDPDCLQLALCILDALSSLPEG  350 (450)
Q Consensus       300 L~~Ls~~~~~----------------------~~~iv~~G~v~~Lv~lL~~-------~~~~~~~~al~~L~~L~~~~e~  350 (450)
                      +.+++.....                      ..... ...++.++..|..       .+..++..|..+|..++..-. 
T Consensus       283 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-  360 (876)
T 1qgr_A          283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-  360 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-
T ss_pred             HHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-
Confidence            8888743210                      00001 2346777788742       345788889999988876422 


Q ss_pred             HHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252          351 KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLC  430 (450)
Q Consensus       351 r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l  430 (450)
                       ..+..  ..++.+...+.+.+..+++.|+.+|..++.....+.... .-..+++.|+..+.+. ++.+|..|...|..+
T Consensus       361 -~~~~~--~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~  435 (876)
T 1qgr_A          361 -DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRI  435 (876)
T ss_dssp             -GGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHH
T ss_pred             -HhhHH--HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence             12222  456666777777788999999999999987654221112 2245788888888776 788999999988887


Q ss_pred             Hhhc
Q 041252          431 SLNY  434 (450)
Q Consensus       431 s~~~  434 (450)
                      ....
T Consensus       436 ~~~~  439 (876)
T 1qgr_A          436 CELL  439 (876)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            7763

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.24  E-value=1.9e-07  Score=71.22  Aligned_cols=44  Identities=16%  Similarity=0.227  Sum_probs=38.9

Q ss_pred             CeeeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           68 SVFVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      +...|+||.+.+.+|++++|||. ||+.|+.+|+     .||.|+.++..
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~   61 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH   61 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence            34679999999999999999999 9999998873     89999998754

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.19  E-value=2.6e-07  Score=90.33  Aligned_cols=44  Identities=11%  Similarity=0.143  Sum_probs=39.9

Q ss_pred             CeeeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           68 SVFVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      +++.||||.+.+.+|++++|||+ ||+.|+..|     ..||.||.++..
T Consensus       294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            46899999999999999999999 999999988     679999988653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.19  E-value=1.7e-05  Score=80.00  Aligned_cols=236  Identities=14%  Similarity=0.091  Sum_probs=154.3

Q ss_pred             cHHHHHHHhhcc--chHHHHHHHHHHHHHHHHcHHHH-HHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh
Q 041252          150 RASELLGTLKKV--KGQARVQALKELHQIAAAHASAR-KTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK  226 (450)
Q Consensus       150 ~i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~r-~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k  226 (450)
                      .++.++..|++.  +..+|..|++++..+...-..+- ......-.++.+...+.+. +..++..++.+|..+.......
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~  251 (462)
T 1ibr_B          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQY  251 (462)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            355566777766  67899999999987542111000 0000111355566666554 6788999999988876432111


Q ss_pred             -hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC------------------CChhhHhh--hhhHHHHHHHHHh
Q 041252          227 -TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK------------------DFRPEIVS--SHRLLIGLMRLVK  285 (450)
Q Consensus       227 -~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~------------------~~~~~~~~--~~g~l~~Lv~lL~  285 (450)
                       ...+..+.++.++..+...+.+++..|..++..++...                  .....++.  -..+++.++..+.
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~  331 (462)
T 1ibr_B          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (462)
T ss_dssp             CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHH
Confidence             11122267888888888889999999999988886432                  01111111  1346677777775


Q ss_pred             cC------CCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh--hHHHHhcc
Q 041252          286 NK------RHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPE--GKLALKDC  357 (450)
Q Consensus       286 ~~------~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e--~r~~i~~~  357 (450)
                      ..      .+..++..|..+|..|+..-..  .+. ..+++.+...|.+.+..+++.|+.+|..++....  .-....  
T Consensus       332 ~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--  406 (462)
T 1ibr_B          332 KQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--  406 (462)
T ss_dssp             CCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--
T ss_pred             hcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--
Confidence            32      2346778899999998843221  122 2466788888888899999999999999997432  111112  


Q ss_pred             CCChHHHHHHHhcCChHHHHHHHHHHHHhcccCc
Q 041252          358 ANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP  391 (450)
Q Consensus       358 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~  391 (450)
                      ...+|.++..|...++.++..|+.+|.+++....
T Consensus       407 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (462)
T ss_dssp             TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence            4688999999998889999999999999987543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.19  E-value=3.2e-05  Score=81.98  Aligned_cols=257  Identities=16%  Similarity=0.089  Sum_probs=155.1

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      ....+++.+.+.+.+.+.-..-.+..++..+++....     .+..+.+-|.+. ++.++..|+.+|.++... +.    
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~-n~~vr~lAL~~L~~i~~~-~~----  139 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHS-TQFVQGLALCTLGCMGSS-EM----  139 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCS-SSHHHHHHHHHHHHHCCH-HH----
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCC-CHhHHHHHHHHHHhcCCH-HH----
Confidence            3455666666666666665555666666544432111     256666677664 677888888888887732 11    


Q ss_pred             cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHH
Q 041252          230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEV  309 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~  309 (450)
                       -...++.+...|.+.++.+|..|+.++..+...+..   .+  .++++.+..+|.+. ++.++.+|+.+|..++.....
T Consensus       140 -~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v--~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~  212 (618)
T 1w63_A          140 -CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM--EMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPD  212 (618)
T ss_dssp             -HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG--GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHH
T ss_pred             -HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH--HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChH
Confidence             134577888888888899999999998888754332   12  24566677777765 677888888888888865432


Q ss_pred             HHHHHhcCCHHHHHHhcCC---------------CChhHHHHHHHHHHHhcCC-hhhHHHHh------------------
Q 041252          310 RSLVVSIGAVPQLVELLPS---------------LDPDCLQLALCILDALSSL-PEGKLALK------------------  355 (450)
Q Consensus       310 ~~~iv~~G~v~~Lv~lL~~---------------~~~~~~~~al~~L~~L~~~-~e~r~~i~------------------  355 (450)
                      ..... ...+|.++.+|.+               .++-.+...+.+|..++.. ++....+.                  
T Consensus       213 ~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~  291 (618)
T 1w63_A          213 MLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGN  291 (618)
T ss_dssp             HHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHH
Confidence            11111 2456666665532               2455566666666666543 21111000                  


Q ss_pred             ----c--------------cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCH
Q 041252          356 ----D--------------CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNP  417 (450)
Q Consensus       356 ----~--------------~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~  417 (450)
                          +              ...++..|.+++.+.++.++..|+.+|..++...+     .+++ .....++..+.++ +.
T Consensus       292 aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-----~~~~-~~~~~i~~~l~d~-d~  364 (618)
T 1w63_A          292 AILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-----NAVQ-RHRSTIVDCLKDL-DV  364 (618)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-----HHHG-GGHHHHHHGGGSS-CH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-----HHHH-HHHHHHHHHccCC-Ch
Confidence                0              00245566666666666777777777776665433     1222 2345666666665 68


Q ss_pred             HHHHHHHHHHHHHHh
Q 041252          418 VLKQRSAELLKLCSL  432 (450)
Q Consensus       418 ~~k~~A~~lL~~ls~  432 (450)
                      .+|..|..+|..+..
T Consensus       365 ~Ir~~alelL~~l~~  379 (618)
T 1w63_A          365 SIKRRAMELSFALVN  379 (618)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHcc
Confidence            889999988876654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.14  E-value=1.5e-05  Score=87.14  Aligned_cols=266  Identities=12%  Similarity=0.065  Sum_probs=168.0

Q ss_pred             HHHHhhccchHHHHHHHHHHHHHHHHc--HHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc--
Q 041252          154 LLGTLKKVKGQARVQALKELHQIAAAH--ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL--  229 (450)
Q Consensus       154 Lv~~L~~~~~~~~~~Al~~L~~l~~~~--~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i--  229 (450)
                      +...+.+.+...|..|+..|..++...  ......+  ...++.|+..+... +..++..++.+|..++..-..  .+  
T Consensus       374 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~--~~~~  448 (861)
T 2bpt_A          374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAE--SIDP  448 (861)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGG--GSCT
T ss_pred             HHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhh--hcCC
Confidence            444455667788999999999887532  1122222  13578888888765 678888888888876642111  11  


Q ss_pred             --cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----CChhhHhhhhhHHHHHHHHHhcC-CCccchhHHHHHHH
Q 041252          230 --MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK-----DFRPEIVSSHRLLIGLMRLVKNK-RHPNGILPGLSLLR  301 (450)
Q Consensus       230 --~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~-----~~~~~~~~~~g~l~~Lv~lL~~~-~~~~~~~~al~aL~  301 (450)
                        .-...++.++..|.+. +.++..|+.+|.+++..-     +....  .-..+++.|+.++.+. .++.++..++.+|.
T Consensus       449 ~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~--~~~~il~~L~~~l~~~d~~~~vr~~a~~al~  525 (861)
T 2bpt_A          449 QQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYN--FYPALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGG--GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHH--HHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence              1134577888888765 899999999999997531     11111  1245678888888753 23667888999999


Q ss_pred             HhccC-hHHHHHHHhcCCHHHHHHhcCC---------------CChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHH
Q 041252          302 SICLL-NEVRSLVVSIGAVPQLVELLPS---------------LDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNT  364 (450)
Q Consensus       302 ~Ls~~-~~~~~~iv~~G~v~~Lv~lL~~---------------~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~L  364 (450)
                      .+... +......+. ..++.+++.|..               ....++..++.+|..++.. +..-....  ...++.+
T Consensus       526 ~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l  602 (861)
T 2bpt_A          526 TMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLF  602 (861)
T ss_dssp             HHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHH
T ss_pred             HHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHH
Confidence            88732 221111221 245666666532               1345677888888888754 22111112  2467777


Q ss_pred             HHHHhcCCh-HHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          365 VRLLMRVSE-DCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       365 v~lL~~~s~-~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      ++.+...+. .+++.++.++..++....+..... . ...++.|+..+.+. ++.++..|..++..+...
T Consensus       603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~-l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~  669 (861)
T 2bpt_A          603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKY-L-ETFSPYLLKALNQV-DSPVSITAVGFIADISNS  669 (861)
T ss_dssp             HHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHH-H-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHH-H-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHH
Confidence            888877666 789999988888876544332221 1 23778888888654 667888888887766554

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.13  E-value=2.8e-05  Score=71.96  Aligned_cols=187  Identities=14%  Similarity=0.118  Sum_probs=134.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHh-cCCCccchhHHHHHHHHhccChHHHHHHH
Q 041252          237 LLVDMLNEGSVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVK-NKRHPNGILPGLSLLRSICLLNEVRSLVV  314 (450)
Q Consensus       237 ~Lv~lL~~~~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~-~~~~~~~~~~al~aL~~Ls~~~~~~~~iv  314 (450)
                      .+.+.+.+.+...|..|+..|..+.... .....  .-..+++.|...+. +. +..++..|+.+|..|+..-.....-.
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~--~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG--EYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC--CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC--CHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4777888889999999999999997652 21111  11356788888885 65 68889999999999983221110111


Q ss_pred             hcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhccc-Cchh
Q 041252          315 SIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKI-APEE  393 (450)
Q Consensus       315 ~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~-~~~~  393 (450)
                      -.-.+|.|++.+.+.+..+++.|..+|..+.....-     +  ..++.+...+.+.++.+++.++..|..+... .++.
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-----~--~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-----E--AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-----H--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-----H--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            123689999999999999999999999999875321     1  2467788888888899999999999995443 3332


Q ss_pred             HHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252          394 CSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       394 ~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~  435 (450)
                      ....-. ...++.|+.++.+. .+.+|..|...+..+.....
T Consensus       169 ~~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          169 LNKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             CCHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcC
Confidence            111122 25788888888765 78999999998888776643

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.08  E-value=2.4e-06  Score=62.97  Aligned_cols=44  Identities=16%  Similarity=0.084  Sum_probs=38.8

Q ss_pred             CeeeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           68 SVFVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      +...|+||.+-..+|++++|||. ||..|+..     ...||.||.++..
T Consensus        14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            45779999999999999999999 99999983     4789999998754

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.07  E-value=4.7e-07  Score=74.12  Aligned_cols=45  Identities=20%  Similarity=0.342  Sum_probs=0.0

Q ss_pred             eeCcCCCCCCCCCee------------------CCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           70 FVCPISLEPMQDPVT------------------LCTGQTYERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        70 ~~Cpi~~~~m~dPv~------------------~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      -.|+||.+.|.+|.+                  ++|||.|.+.||.+|+.. +.+||.|+.++.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence            479999999988532                  489999999999999997 788999998753

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.03  E-value=0.00025  Score=77.30  Aligned_cols=276  Identities=11%  Similarity=0.023  Sum_probs=173.8

Q ss_pred             hhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcH-HHHHHH--HhhCChHHHHhhhCCCC-ChhhHHHHHHHHHhcCC-
Q 041252          148 QGRASELLGTLKKV-KGQARVQALKELHQIAAAHA-SARKTM--VDEGGVALISSLLGPFT-SHAVGSEAVGVLVNLTL-  221 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~-~~r~~i--~~~G~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~-  221 (450)
                      ...++.|+..+.+. +...+..|+..|..++..-. +.| .+  .....++.+...+.... +..++..|+.+|.++.. 
T Consensus       133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~  211 (861)
T 2bpt_A          133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF  211 (861)
T ss_dssp             HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            45577788888877 77889999999999986421 110 00  01123566666776532 56899999999887532 


Q ss_pred             Cchhhh-hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCC-hhhHhhhhhHHHHHHHHHhcCCCccchhHHHHH
Q 041252          222 DSESKT-NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF-RPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSL  299 (450)
Q Consensus       222 ~~~~k~-~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~-~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~a  299 (450)
                      -+.+-. .......++.+...+.+++.++|..++.+|..++..... ....+. ..+++.+...+.+. ++.++..++.+
T Consensus       212 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~-~~~vr~~a~~~  289 (861)
T 2bpt_A          212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSP-NDKVASMTVEF  289 (861)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred             HHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence            111100 000112466677777788999999999999998754321 111111 14555566666654 57788899999


Q ss_pred             HHHhccChHHH------------------HHHHhcCCHHHHHHhcCCC-------ChhHHHHHHHHHHHhcCChhhHHHH
Q 041252          300 LRSICLLNEVR------------------SLVVSIGAVPQLVELLPSL-------DPDCLQLALCILDALSSLPEGKLAL  354 (450)
Q Consensus       300 L~~Ls~~~~~~------------------~~iv~~G~v~~Lv~lL~~~-------~~~~~~~al~~L~~L~~~~e~r~~i  354 (450)
                      +..++......                  ...+ ...++.++..|...       +..++..+..+|..++..-.  ..+
T Consensus       290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~  366 (861)
T 2bpt_A          290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHI  366 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGG
T ss_pred             HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhH
Confidence            88887543210                  1111 34678888888642       24688889999988886421  112


Q ss_pred             hccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          355 KDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       355 ~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      ..  ..++.+.+.+.+.+...++.|+.+|..++.....+.....+ ..+++.|+..+.+. ++.+|..+..++..+...
T Consensus       367 ~~--~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~  441 (861)
T 2bpt_A          367 LE--PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ-SLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             HH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHH
Confidence            21  34556666666667889999999999998765312111222 24677788877766 788999988877776655

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.03  E-value=5.3e-06  Score=63.19  Aligned_cols=49  Identities=14%  Similarity=0.203  Sum_probs=41.2

Q ss_pred             CeeeCcCCCCCC--CCCeeCCCC-----CcccHHHHHHHHhcC-CCCCCCcCCcCCC
Q 041252           68 SVFVCPISLEPM--QDPVTLCTG-----QTYERSNILKWFSLG-RYTCPTTMQELWD  116 (450)
Q Consensus        68 ~~~~Cpi~~~~m--~dPv~~~~g-----~ty~r~~I~~~~~~~-~~~cP~~~~~l~~  116 (450)
                      +...|+||++-+  .+|++++|+     |.|-+.||.+|+... ..+||.|+.++..
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            456799999877  479999996     999999999999863 4689999998764

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.01  E-value=0.00023  Score=68.37  Aligned_cols=186  Identities=15%  Similarity=0.119  Sum_probs=138.9

Q ss_pred             hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      -++..++..|.+++...+..++..|+.+-.++.+.-..+++.+|+..|+.+.... +...+..++.+|.+|-.+......
T Consensus       118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~g  196 (339)
T 3dad_A          118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLG  196 (339)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccc
Confidence            4577888989888889999999999996667788888999999999999999775 788999999999999888877766


Q ss_pred             cc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhh-h---------HHHHHHHHHhc--CCCccchhH
Q 041252          229 LM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSH-R---------LLIGLMRLVKN--KRHPNGILP  295 (450)
Q Consensus       229 i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~-g---------~l~~Lv~lL~~--~~~~~~~~~  295 (450)
                      ++ .+..|..+..++.+.+..+...|..+|..+....+.+...+... .         .+..|+.+|.+  ..+.+.+.+
T Consensus       197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            65 67899999999998899999999999999987665444443222 1         26789999973  235667777


Q ss_pred             HHHHHHHhc---cChHHHHHHH----hcCCHHHHHHhcCCC--ChhHHH
Q 041252          296 GLSLLRSIC---LLNEVRSLVV----SIGAVPQLVELLPSL--DPDCLQ  335 (450)
Q Consensus       296 al~aL~~Ls---~~~~~~~~iv----~~G~v~~Lv~lL~~~--~~~~~~  335 (450)
                      ++..|-.+-   .+.+.+..++    +.|.=..+.+.|+..  ++++++
T Consensus       277 amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          277 TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            777666553   2233344444    345555566666554  444443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.99  E-value=2.9e-06  Score=70.96  Aligned_cols=120  Identities=13%  Similarity=0.076  Sum_probs=87.2

Q ss_pred             hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhh
Q 041252          190 EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPE  269 (450)
Q Consensus       190 ~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~  269 (450)
                      ...++.++.+|.+. +..++..|+.+|..+..           ..++.|+.+|++.++.+|..|+.+|.++..       
T Consensus        11 ~~~~~~l~~~L~~~-~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADE-NKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------   71 (131)
T ss_dssp             ----------CCSS-CCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred             cccHHHHHHHhcCC-CHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence            34577788888765 66777777777765431           137999999999999999999999887742       


Q ss_pred             HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHH
Q 041252          270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDA  343 (450)
Q Consensus       270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~  343 (450)
                          ...++.|+.+|+++ ++.++..++++|.++..          ..+++.|+.+|.+.+..++..|..+|..
T Consensus        72 ----~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ----HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                23578899999876 68899999999998862          2357899999998899999999988764

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.96  E-value=1.4e-05  Score=91.35  Aligned_cols=273  Identities=12%  Similarity=0.039  Sum_probs=179.5

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      .+..++..+.+.+.+.|..|...|.+....+...-..-.....++.|+..|.+. +..++..|+.+|..+...-.. .. 
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~-~~-   83 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE-YQ-   83 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH-HH-
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH-HH-
Confidence            466788888899999999999999876533210000000112467788888764 778999999999887643211 00 


Q ss_pred             cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh-----hhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR-----PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~-----~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                       -...++.|+..|.+++..+|..|+.+|..++..-...     ...-....+++.|+..+.+..++.++..++.+|..++
T Consensus        84 -~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~  162 (1230)
T 1u6g_C           84 -VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  162 (1230)
T ss_dssp             -HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence             0234677778887888889999999999887432211     0011234678899998874235778889999999887


Q ss_pred             cC--hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCC-hHHHHHHHH
Q 041252          305 LL--NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVS-EDCTQYALS  381 (450)
Q Consensus       305 ~~--~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s-~~~~e~A~~  381 (450)
                      ..  .....  .-...++.|+..|.+.+..+++.|+.+|..++.....  .+.  ...++.+++.|.... ...+..++.
T Consensus       163 ~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~~~~~~~r~~a~~  236 (1230)
T 1u6g_C          163 SRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRTYIQ  236 (1230)
T ss_dssp             HHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhccCCchhHHHHHHH
Confidence            31  10000  0123566788888888899999999999999975332  223  356888998887653 355666778


Q ss_pred             HHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252          382 ILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       382 ~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~  435 (450)
                      ++..++...+.....  .-..+++.++..+++. ++.+|+.|...+..+.....
T Consensus       237 ~l~~l~~~~~~~~~~--~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~  287 (1230)
T 1u6g_C          237 CIAAISRQAGHRIGE--YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCP  287 (1230)
T ss_dssp             HHHHHHHHSSGGGTT--SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhHHHHHH--HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHCh
Confidence            887777654422110  1146788888888765 67788888888887766644

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.94  E-value=0.00012  Score=66.42  Aligned_cols=213  Identities=16%  Similarity=0.164  Sum_probs=147.3

Q ss_pred             CcchHHHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHc-HHHHHHHHhhCChHHHH
Q 041252          119 VTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAH-ASARKTMVDEGGVALIS  197 (450)
Q Consensus       119 l~~n~~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv  197 (450)
                      ++.-..++.-+..|.-+.........   ...+..++..|...++.++.+|+..|..+.+.- ...+....+. .++.++
T Consensus         6 ii~~~~lre~L~sWkiK~a~ela~~~---e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI   81 (265)
T 3b2a_A            6 PISKTELRELVLSWQILDAVSLALED---KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFI   81 (265)
T ss_dssp             CCCHHHHHHHHHTTCHHHHHHHHHHC---HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHH
T ss_pred             cccHHHHHHHHHHhhHHHHHHHHHhc---hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHH
Confidence            34445788888888655322111111   234667788888888999999999999999872 2234444444 489999


Q ss_pred             hhhCCCCChhhHHHHHHHHHhcCCC-chhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhH
Q 041252          198 SLLGPFTSHAVGSEAVGVLVNLTLD-SESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRL  276 (450)
Q Consensus       198 ~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~  276 (450)
                      .++++. ++.+.-.|+.+|..|-.+ +-....+  .-.+..+..++.+++.-.++.|+..+..|.-...       ..+.
T Consensus        82 ~llk~~-dEkval~A~r~L~~LLe~vpL~~~~y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V  151 (265)
T 3b2a_A           82 NALSQE-NEKVTIKALRALGYLVKDVPMGSKTF--LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLV  151 (265)
T ss_dssp             HTCCST-THHHHHHHHHHHHHHHTTCCBCHHHH--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHH
T ss_pred             HHHhcc-chhHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHH
Confidence            999775 788888888888775432 2111111  1136778888889999999999999999922221       2345


Q ss_pred             HHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCh
Q 041252          277 LIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLP  348 (450)
Q Consensus       277 l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~  348 (450)
                      +..+.+++.++ ++.++.+++++|.+++...+....  -.+++.-+-++|++.|+.+++.|+.+|..+.+.+
T Consensus       152 ~~~l~sLl~Sk-d~~vK~agl~~L~eia~~S~D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          152 RTYINELVVSP-DLYTKVAGFCLFLNMLNSSADSGH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             HHHHHHHHTCS-SHHHHHHHHHHHHHHGGGCSSCCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhCC-ChhHHHHHHHHHHHhhcccCCHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            67788888665 788999999999999853321110  1234445677888899999999999999999874

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.93  E-value=2.1e-05  Score=72.86  Aligned_cols=181  Identities=15%  Similarity=0.118  Sum_probs=132.1

Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhC-CCCChhhHHHHHHHHHhcCCCchhhhhcc-
Q 041252          153 ELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLG-PFTSHAVGSEAVGVLVNLTLDSESKTNLM-  230 (450)
Q Consensus       153 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~-  230 (450)
                      .+.+.+.+.+...|..|+..|..+...++.....- -...++.|...|. .. +..++..|+.+|..|+..-  +..+. 
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l--~~~~~~   94 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGL--AKRFSN   94 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHH--GGGGHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence            47778888899999999999999987632210000 0123566777774 54 6788999999999887421  11221 


Q ss_pred             -CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cC-h
Q 041252          231 -QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LL-N  307 (450)
Q Consensus       231 -~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~-~  307 (450)
                       -...++.++..+...+..+|..|..+|..+.....       -..+++.|...++++ ++.++..++..|..+. .. +
T Consensus        95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSNK-NPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCC
Confidence             14468999999998999999999999999975432       134678888888876 6889999999999954 33 2


Q ss_pred             H--HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252          308 E--VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL  347 (450)
Q Consensus       308 ~--~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~  347 (450)
                      +  ....+  ...+|.|+.+|.+.+.+++..|..+|..++..
T Consensus       167 ~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          167 TALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             GGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            2  12222  24788999999999999999999999998854

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.81  E-value=0.0019  Score=68.26  Aligned_cols=257  Identities=16%  Similarity=0.164  Sum_probs=165.9

Q ss_pred             HHHHHHHh--hccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252          151 ASELLGTL--KKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN  228 (450)
Q Consensus       151 i~~Lv~~L--~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~  228 (450)
                      ++.+...|  .+.++.+|..|+-++.++...+++.   +...+.++.+..+|... +..++..|+.+|..++.++..  .
T Consensus       148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~~~--~  221 (621)
T 2vgl_A          148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQKNPE--E  221 (621)
T ss_dssp             TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCHH--H
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhChH--H
Confidence            45567777  6678889999999999999876532   22347789999999765 788999999999987653321  1


Q ss_pred             ccCCCchHHHHHHhc----CC-------------CHHHHHHHHHHHHHHhccCCChhhHhh-hhhHHHHHHHHHhcCC--
Q 041252          229 LMQPAKVSLLVDMLN----EG-------------SVETKINCTRLIEKLMEEKDFRPEIVS-SHRLLIGLMRLVKNKR--  288 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~----~~-------------~~~~~~~aa~~L~~La~~~~~~~~~~~-~~g~l~~Lv~lL~~~~--  288 (450)
                      +  ...++.++..|.    .+             ++=.+.....+|..++..++.  +... -...+..++..+.+..  
T Consensus       222 ~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~--~~~~~l~~~L~~il~~~~~~~ks  297 (621)
T 2vgl_A          222 F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDP--AVRGRLTECLETILNKAQEPPKS  297 (621)
T ss_dssp             H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSH--HHHHHHHHHHHHHHHHHHSCCSC
T ss_pred             H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhhccCccc
Confidence            1  123444544442    22             456677766666666532221  1110 0123334443322110  


Q ss_pred             ------C--ccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCC
Q 041252          289 ------H--PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANT  360 (450)
Q Consensus       289 ------~--~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~  360 (450)
                            +  ..+.-.+..++..+...++....     ++..|..+|.+.+++++-.|+..|..++........+.   .-
T Consensus       298 ~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~---~~  369 (621)
T 2vgl_A          298 KKVQHSNAKNAVLFEAISLIIHHDSEPNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK---TH  369 (621)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH---TT
T ss_pred             ccccccchHHHHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH---HH
Confidence                  1  14556777788888755544433     45678899988899999999999999987643233343   34


Q ss_pred             hHHHHHHHh-cCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252          361 IPNTVRLLM-RVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNY  434 (450)
Q Consensus       361 i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~  434 (450)
                      ...++..|. ..+..++..|+.+|..++..+  + ..     .++..|...+... +...|..+...+..|...+
T Consensus       370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~--N-v~-----~Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~k~  435 (621)
T 2vgl_A          370 IETVINALKTERDVSVRQRAVDLLYAMCDRS--N-AQ-----QIVAEMLSYLETA-DYSIREEIVLKVAILAEKY  435 (621)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH--H-HH-----HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCHhHHHHHHHHHHHHcChh--h-HH-----HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhc
Confidence            778888888 778899999999999998643  2 22     2455666666654 6777777777777766554

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.79  E-value=0.00031  Score=63.69  Aligned_cols=226  Identities=13%  Similarity=0.145  Sum_probs=155.0

Q ss_pred             ChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhH
Q 041252          192 GVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEI  270 (450)
Q Consensus       192 ~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~  270 (450)
                      .+..|..+|... |..++.+++.+|-.+-.. +.......-...++.++.++.+.+..+...|..+|..|-.+.+.-..-
T Consensus        34 ~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            467888999765 789999999999986543 222222222567999999999999999999999999997766544433


Q ss_pred             hhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhh
Q 041252          271 VSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEG  350 (450)
Q Consensus       271 ~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~  350 (450)
                      +..  +..+|..+++++ ++-....++..|..|......+      +++..+.+++.|.+..++..++.+|.+++...+.
T Consensus       113 y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D  183 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD  183 (265)
T ss_dssp             HHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred             HHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence            332  447788888865 5667788988888884322222      2456788899889999999999999999975443


Q ss_pred             HHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC-chhHHHHHHhcChHHHHHHHH-HcCCCHHHHHHHHHHHH
Q 041252          351 KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA-PEECSSAAVDAGLAAKLFLVI-QSGCNPVLKQRSAELLK  428 (450)
Q Consensus       351 r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~~~~~~G~i~~L~~ll-~s~~~~~~k~~A~~lL~  428 (450)
                      ...+.   +.+.-+-.+|.+.++...+.|+.+|..+.... +++.....  .++....-.+. ..| .|..+.+|...--
T Consensus       184 ~~i~~---~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~--~~~~~~v~~l~~~~~-~~~~~~ka~~v~~  257 (265)
T 3b2a_A          184 SGHLT---LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL--LKISRIVDGLVYREG-APIIRLKAKKVSD  257 (265)
T ss_dssp             CCCGG---GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH--HHHHHHHHHGGGCSS-CHHHHHHHHHHHH
T ss_pred             HHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH--HHHHHHHHHHHHhcC-ChhHHHHHHHHHH
Confidence            33332   23334456667788999999999999987654 22221111  12222222333 345 7889999887766


Q ss_pred             HHHhh
Q 041252          429 LCSLN  433 (450)
Q Consensus       429 ~ls~~  433 (450)
                      .+-.+
T Consensus       258 ~le~~  262 (265)
T 3b2a_A          258 LIDSV  262 (265)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55443

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.74  E-value=0.00069  Score=65.01  Aligned_cols=186  Identities=19%  Similarity=0.176  Sum_probs=135.4

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHH-HhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHH
Q 041252          235 VSLLVDMLNEGSVETKINCTRLIEK-LMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLV  313 (450)
Q Consensus       235 i~~Lv~lL~~~~~~~~~~aa~~L~~-La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~i  313 (450)
                      +..+++.|.+++.+.+..+..-|.. ++.+.+...+++.. +++..|++++... +.+.+..+++||.+|-.+...-..+
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~-~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gv  197 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHS-EGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGV  197 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHT-THHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHh-ccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccch
Confidence            4455666777788888888888887 56677777776554 5589999999876 7889999999999999888777677


Q ss_pred             Hh-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh-hHHHHhcc------CC---ChHHHHHHHh---cCChHHHHHH
Q 041252          314 VS-IGAVPQLVELLPSLDPDCLQLALCILDALSSLPE-GKLALKDC------AN---TIPNTVRLLM---RVSEDCTQYA  379 (450)
Q Consensus       314 v~-~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e-~r~~i~~~------~g---~i~~Lv~lL~---~~s~~~~e~A  379 (450)
                      ++ ...|..++.++.+.+..+...|+++|..++...+ +...+.+.      +.   -...|+.+|.   ..+...+.+|
T Consensus       198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a  277 (339)
T 3dad_A          198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT  277 (339)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence            75 5788899999988889999999999999987644 44333321      11   2779999997   5678899999


Q ss_pred             HHHHHHhcccCchhH-HHHH----HhcChHHHHHHHHHc-CCCHHHHHH
Q 041252          380 LSILWSICKIAPEEC-SSAA----VDAGLAAKLFLVIQS-GCNPVLKQR  422 (450)
Q Consensus       380 ~~~L~~L~~~~~~~~-~~~~----~~~G~i~~L~~ll~s-~~~~~~k~~  422 (450)
                      +..+-.+-...+++. ...+    -+.|.-..+...+.+ ++.+..+++
T Consensus       278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            888877666555321 2222    246765666666655 345666655

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.72  E-value=1.4e-06  Score=72.97  Aligned_cols=121  Identities=10%  Similarity=-0.009  Sum_probs=87.3

Q ss_pred             CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHH
Q 041252          231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR  310 (450)
Q Consensus       231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~  310 (450)
                      ....++.++.+|+++++.+|..|+.+|..+..   .         .++.|+.+|+++ ++.++..++++|.++..     
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~---~---------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~-----   71 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD---E---------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD-----   71 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSS---T---------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS-----
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc---h---------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC-----
Confidence            35678888999998888888888877765521   0         148888888875 68899999999988863     


Q ss_pred             HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 041252          311 SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWS  385 (450)
Q Consensus       311 ~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  385 (450)
                           ..+++.|+.+|.+.++.++..|+.+|..+..           ..+++.|++++...+..++..|+.+|..
T Consensus        72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                 1257899999988899999999999998862           3467889999988788899988887753

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.00034  Score=65.20  Aligned_cols=192  Identities=7%  Similarity=0.073  Sum_probs=131.0

Q ss_pred             HHHhcCCCHHHHHHHHHHHHH-HhccCCChhhHhhh-hhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh---HHH-HH
Q 041252          239 VDMLNEGSVETKINCTRLIEK-LMEEKDFRPEIVSS-HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN---EVR-SL  312 (450)
Q Consensus       239 v~lL~~~~~~~~~~aa~~L~~-La~~~~~~~~~~~~-~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~---~~~-~~  312 (450)
                      -..+.+.+...|..|...|.. +..+.......... ..++..|.+.+..+.+..++..|+.+|..|+..-   ... ..
T Consensus        22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y  101 (249)
T 2qk1_A           22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY  101 (249)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence            445678899999999999999 86442211100111 3567788888843336778899999999998321   111 11


Q ss_pred             HHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhc-cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCc
Q 041252          313 VVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKD-CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP  391 (450)
Q Consensus       313 iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~-~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~  391 (450)
                      .  .-.+|.+++.+.+....+++.+..+|..++.+-+- ..... -...++.|+..|.+.+..+++.++.+|..+....+
T Consensus       102 ~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          102 V--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             H--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            1  12688999999988899999999999988863210 11100 01356678888888889999999999999887665


Q ss_pred             h--hHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252          392 E--ECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNY  434 (450)
Q Consensus       392 ~--~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~  434 (450)
                      .  ......+....++.|..++... .+.+|++|...+-.+...-
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~v  222 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIF  222 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh
Confidence            2  1111122257889999999665 7899999999888766553

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.00014  Score=67.91  Aligned_cols=187  Identities=12%  Similarity=0.124  Sum_probs=129.3

Q ss_pred             HHHHhhccchHHHHHHHHHHHH-HHHHcHHHHHHHHh-hCChHHHHhhh-CCCCChhhHHHHHHHHHhcCCCchhh-hhc
Q 041252          154 LLGTLKKVKGQARVQALKELHQ-IAAAHASARKTMVD-EGGVALISSLL-GPFTSHAVGSEAVGVLVNLTLDSESK-TNL  229 (450)
Q Consensus       154 Lv~~L~~~~~~~~~~Al~~L~~-l~~~~~~~r~~i~~-~G~i~~Lv~lL-~~~~~~~v~~~Al~~L~~Ls~~~~~k-~~i  229 (450)
                      +-..+.+.+...|..|+..|.. +..+.+.....-.+ ...+..|...+ +.. +..++..|+.+|..|+.  .-+ ..+
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~-n~~v~~~A~~al~~la~--~l~~~~f   97 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA-NIQAVALAAQSVELICD--KLKTPGF   97 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHH--HHCTTTS
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHH--hcccccc
Confidence            5566788899999999999998 76443211100011 12356677777 343 56788899999988873  222 223


Q ss_pred             c-C--CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhh--hhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          230 M-Q--PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVS--SHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       230 ~-~--~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~--~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                      . .  .-.++.++..+++....++..+..+|..++..-+..  ...  -..+++.|+..|+++ ++.++..++.+|..+.
T Consensus        98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~--~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A           98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL--ASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASM  174 (249)
T ss_dssp             CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT--CTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc--ccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHH
Confidence            2 1  336889999998888999999999999997533211  111  234788899999887 6889999999998887


Q ss_pred             cC-hH--HH-HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252          305 LL-NE--VR-SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS  346 (450)
Q Consensus       305 ~~-~~--~~-~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~  346 (450)
                      .. +.  .. ...+....+|.|..+|.+.+.++++.|..+|..++.
T Consensus       175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            32 21  11 122224688999999999999999999999998864

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.58  E-value=0.024  Score=59.84  Aligned_cols=280  Identities=15%  Similarity=0.089  Sum_probs=178.1

Q ss_pred             cchHHHHHHHHHHHHhcccccccCCcch-hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHh
Q 041252          120 TPNKTLYHLIHTWFSQKYLLMKKRSEDV-QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISS  198 (450)
Q Consensus       120 ~~n~~L~~~I~~w~~~~~~~~~~~~~~~-~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~  198 (450)
                      .+|..++++..-+...-..    ...+. .-.+..+.+-|.+.++..|.-|+.+|.++.  .++.-+     ..++.+..
T Consensus        85 s~~~~~Krl~YL~l~~~~~----~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~  153 (621)
T 2vgl_A           85 SNRYTEKQIGYLFISVLVN----SNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPK  153 (621)
T ss_dssp             CSCHHHHHHHHHHHHHSCC----CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc----CCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHH
Confidence            4677888887776665321    11111 112334555566777888888999988874  233222     24678888


Q ss_pred             hh--CCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhH
Q 041252          199 LL--GPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRL  276 (450)
Q Consensus       199 lL--~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~  276 (450)
                      +|  .+. +.-++..|+-++..+....  ...+-..+.++.+..+|...++.++.+|..+|..++..+..   .+  ...
T Consensus       154 ~l~~~d~-~~~VRK~A~~al~kl~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~---~~--~~~  225 (621)
T 2vgl_A          154 ILVAGDT-MDSVKQSAALCLLRLYRTS--PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE---EF--KTS  225 (621)
T ss_dssp             HHHCSSS-CHHHHHHHHHHHHHHHHHC--GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH---HH--TTH
T ss_pred             HHhCCCC-CHHHHHHHHHHHHHHHHhC--hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH---HH--HHH
Confidence            88  654 6789999999888866422  22332358999999999988999999999999999765432   11  123


Q ss_pred             HHHHHH----HHhcC-C-----------CccchhHHHHHHHHhcc--ChHHHHHHHhcCCHHHHHHhcCC---------C
Q 041252          277 LIGLMR----LVKNK-R-----------HPNGILPGLSLLRSICL--LNEVRSLVVSIGAVPQLVELLPS---------L  329 (450)
Q Consensus       277 l~~Lv~----lL~~~-~-----------~~~~~~~al~aL~~Ls~--~~~~~~~iv~~G~v~~Lv~lL~~---------~  329 (450)
                      ++.+++    ++..+ .           ++-.+...+..|..++.  +++.+..+.+  .++.++..+.+         .
T Consensus       226 ~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~  303 (621)
T 2vgl_A          226 VSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHS  303 (621)
T ss_dssp             HHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccccccc
Confidence            344444    43332 1           23456677778888774  3445554444  33334433211         1


Q ss_pred             C--hhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHH
Q 041252          330 D--PDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKL  407 (450)
Q Consensus       330 ~--~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L  407 (450)
                      +  ..+.-.|+.++..+...++-+..      ++..|.++|.+.++.++..|+..|..++...+..   .+++ .....+
T Consensus       304 n~~~aVl~ea~~~i~~l~~~~~~~~~------~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~---~~~~-~~~~~i  373 (621)
T 2vgl_A          304 NAKNAVLFEAISLIIHHDSEPNLLVR------ACNQLGQFLQHRETNLRYLALESMCTLASSEFSH---EAVK-THIETV  373 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH---HHHH-TTHHHH
T ss_pred             chHHHHHHHHHHHHHhcCCcHHHHHH------HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH---HHHH-HHHHHH
Confidence            2  27788888888888755543333      4557888888778899999999999998876521   1232 245566


Q ss_pred             HHHHH-cCCCHHHHHHHHHHHHHHH
Q 041252          408 FLVIQ-SGCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       408 ~~ll~-s~~~~~~k~~A~~lL~~ls  431 (450)
                      +..+. ++ +..+|..|..+|..+.
T Consensus       374 ~~~L~~d~-d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          374 INALKTER-DVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             HHHHTTCC-CHHHHHHHHHHHHHHC
T ss_pred             HHHhccCC-CHhHHHHHHHHHHHHc
Confidence            66666 54 6788888888776554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.48  E-value=0.0032  Score=69.37  Aligned_cols=272  Identities=13%  Similarity=0.109  Sum_probs=172.1

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM  230 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~  230 (450)
                      +.+++..++..+.+.+..|...|..+...+...  .....+.+..|...+....+.   +.|+.++..|+........+ 
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~-   89 (986)
T 2iw3_A           16 LEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSV-   89 (986)
T ss_dssp             HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTT-
T ss_pred             HHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCc-
Confidence            445555565544556667777777766532111  112235667777777654222   88888888877543222111 


Q ss_pred             C---CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252          231 Q---PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN  307 (450)
Q Consensus       231 ~---~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~  307 (450)
                      +   -+.++.+..........+|..|..++..+...-.  ...+  ..++|.|+..+.+...+..+..|+.+|..|+...
T Consensus        90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~--~~a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~  165 (986)
T 2iw3_A           90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN--PVAI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA  165 (986)
T ss_dssp             HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC--GGGH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred             ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC--HHHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence            1   1457777777777778899988888888854322  1122  5678999999977545778889999999998433


Q ss_pred             HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhH----------HHHhccCCChHH--------------
Q 041252          308 EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGK----------LALKDCANTIPN--------------  363 (450)
Q Consensus       308 ~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r----------~~i~~~~g~i~~--------------  363 (450)
                      .......=...||.+-+.+-+..++++..|..++..+|..-.|+          ..+.+ ..-+|.              
T Consensus       166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~-p~~~~~~~~~l~~~tfv~~v  244 (986)
T 2iw3_A          166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD-PTEVPETVHLLGATTFVAEV  244 (986)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHC-TTHHHHHHHHHTTCCCCSCC
T ss_pred             HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcC-hhhhHHHHHHhhcCeeEeee
Confidence            22222222468999999999999999999999999998642221          12222 222222              


Q ss_pred             -----------HHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252          364 -----------TVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL  432 (450)
Q Consensus       364 -----------Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~  432 (450)
                                 |.+-|...+...++.++-++-|+|+.-.+..-..-.-.-.+|.|-.....-..|++|+.|...+..|..
T Consensus       245 ~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          245 TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR  324 (986)
T ss_dssp             CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence                       222222335667788888999999865433211111235666666666666789999999998888866


Q ss_pred             h
Q 041252          433 N  433 (450)
Q Consensus       433 ~  433 (450)
                      .
T Consensus       325 ~  325 (986)
T 2iw3_A          325 V  325 (986)
T ss_dssp             H
T ss_pred             h
Confidence            6

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.47  E-value=0.0021  Score=64.71  Aligned_cols=231  Identities=14%  Similarity=0.115  Sum_probs=151.2

Q ss_pred             HHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCC--hHHHHhhhCC----C------------CChhhHHHHHH
Q 041252          154 LLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGG--VALISSLLGP----F------------TSHAVGSEAVG  214 (450)
Q Consensus       154 Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~--i~~Lv~lL~~----~------------~~~~v~~~Al~  214 (450)
                      ++..|.+. ..+.+..++..|..+... +++|..+.+.++  ++.++.++..    .            ..-..+.+++-
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll  250 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL  250 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence            55556553 234455688888888754 568998887643  5666544321    1            02346788999


Q ss_pred             HHHhcCCCchhhhhccCCCch--HHHHHHhcCC-CHHHHHHHHHHHHHHhccCC-Ch----hhHhhhhhHHHHHHHHHhc
Q 041252          215 VLVNLTLDSESKTNLMQPAKV--SLLVDMLNEG-SVETKINCTRLIEKLMEEKD-FR----PEIVSSHRLLIGLMRLVKN  286 (450)
Q Consensus       215 ~L~~Ls~~~~~k~~i~~~g~i--~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~-~~----~~~~~~~g~l~~Lv~lL~~  286 (450)
                      +++.|+.+++....+.+.+..  +.|+.+++.. -..+..-+..+|+||.+.+. ..    .+.+...++ ..++..|..
T Consensus       251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~  329 (480)
T 1ho8_A          251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE  329 (480)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred             HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence            999999998877777666643  6777777754 57788888999999976542 11    112222233 445566654


Q ss_pred             C-C-CccchhHH-------HHHHHHhccChHHHHHHHhcC---------------------------CHHHHHHhcCC--
Q 041252          287 K-R-HPNGILPG-------LSLLRSICLLNEVRSLVVSIG---------------------------AVPQLVELLPS--  328 (450)
Q Consensus       287 ~-~-~~~~~~~a-------l~aL~~Ls~~~~~~~~iv~~G---------------------------~v~~Lv~lL~~--  328 (450)
                      . . +++..+..       -.....+++.++.+..+-+ |                           .+..|+++|.+  
T Consensus       330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~s-G~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~  408 (480)
T 1ho8_A          330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS-KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV  408 (480)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc-CCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence            3 2 23322211       1123344444555444432 3                           66789999963  


Q ss_pred             --------CChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252          329 --------LDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK  388 (450)
Q Consensus       329 --------~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  388 (450)
                              .++.+..-|+.=|..++.+ |++|..+.+ -|+=..++++|.+.+++++.+|+.++-.+..
T Consensus       409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~-lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCcceEEeecccHHHHHHHCcchhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                    3677888888888888865 999998877 7888999999999999999999998876544

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.46  E-value=0.00025  Score=80.94  Aligned_cols=228  Identities=9%  Similarity=-0.018  Sum_probs=146.5

Q ss_pred             hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh-hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh
Q 041252          193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT-NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV  271 (450)
Q Consensus       193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~-~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~  271 (450)
                      ++.|+.-+.+. |.+++..|...|.+....+.... .-.....++.+++.|.+.+.++|..|+.+|..++..-..  .  
T Consensus         8 l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~--   82 (1230)
T 1u6g_C            8 ISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--Y--   82 (1230)
T ss_dssp             HHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--H--
T ss_pred             HHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--H--
Confidence            45556556554 78899999888887443221100 001124578888889888999999999999999753221  1  


Q ss_pred             hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc--ChHH----HHHHHhcCCHHHHHHhcC-CCChhHHHHHHHHHHHh
Q 041252          272 SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL--LNEV----RSLVVSIGAVPQLVELLP-SLDPDCLQLALCILDAL  344 (450)
Q Consensus       272 ~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~--~~~~----~~~iv~~G~v~~Lv~lL~-~~~~~~~~~al~~L~~L  344 (450)
                      .-..+++.|+..+.++ ++.++..++.+|..++.  .+..    ...-.-...+|.|+..+. +.+..+++.|+.+|..+
T Consensus        83 ~~~~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~  161 (1230)
T 1u6g_C           83 QVETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  161 (1230)
T ss_dssp             HHHHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            1134677788877765 56778888888888873  2210    001112346889999998 47889999999999998


Q ss_pred             cCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHH
Q 041252          345 SSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRS  423 (450)
Q Consensus       345 ~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A  423 (450)
                      +.. +..-....  ...++.++..+.+.+..+++.|+.+|..++...++..     -...++.++..+.....+..|..|
T Consensus       162 ~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-----~~~~l~~l~~~L~~~~~~~~r~~a  234 (1230)
T 1u6g_C          162 LSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-----FVDLIEHLLSELSKNDSMSTTRTY  234 (1230)
T ss_dssp             HHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred             HHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-----HHHHHHHHHHHhccCCchhHHHHH
Confidence            842 11000011  1345566667776778999999999999988664321     234678888877665334456666


Q ss_pred             HHHHHHHHhh
Q 041252          424 AELLKLCSLN  433 (450)
Q Consensus       424 ~~lL~~ls~~  433 (450)
                      ...+..+...
T Consensus       235 ~~~l~~l~~~  244 (1230)
T 1u6g_C          235 IQCIAAISRQ  244 (1230)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7666666554

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.26  E-value=0.055  Score=47.32  Aligned_cols=208  Identities=16%  Similarity=0.152  Sum_probs=135.0

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      .+..++..|...-+.+|.+|+..+..+++.-++...-+     +.-|+.+++.+..-....+...++..++.        
T Consensus        33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~--------   99 (253)
T 2db0_A           33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAK--------   99 (253)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHH--------
Confidence            35678888888778899999999999887655443332     34555666543333343444444444332        


Q ss_pred             cCCCchHHHHHH----hcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252          230 MQPAKVSLLVDM----LNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL  305 (450)
Q Consensus       230 ~~~g~i~~Lv~l----L~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~  305 (450)
                      ..+..+..+|.+    ..-+++..|.+-..+|..++..++..     -.++...+..++.++ +..-+..++..+..+..
T Consensus       100 i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l-----~~~v~rdi~smltsk-d~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          100 EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML-----MASIVRDFMSMLSSK-NREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHTSCS-SHHHHHHHHHHHHTCCT
T ss_pred             hCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH-----HHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence            123334444444    45679999999999999998766431     245667888888876 33334455555555543


Q ss_pred             ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252          306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW  384 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~  384 (450)
                         |..+-+. -.+|.|..+|.+.+.-++..|+.+|.+++.. +.-|..+.+       -++-+...|+.++......|.
T Consensus       174 ---n~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~-------kl~e~~D~S~lv~~~V~egL~  242 (253)
T 2db0_A          174 ---NSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK-------RLEELNDTSSLVNKTVKEGIS  242 (253)
T ss_dssp             ---TTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH-------HHHHCCCSCHHHHHHHHHHHH
T ss_pred             ---cCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH-------HHHHhcCcHHHHHHHHHHHHH
Confidence               3333332 3578899999999999999999999999965 655555543       345556677777766666665


Q ss_pred             Hhc
Q 041252          385 SIC  387 (450)
Q Consensus       385 ~L~  387 (450)
                      .+.
T Consensus       243 rl~  245 (253)
T 2db0_A          243 RLL  245 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.20  E-value=0.00046  Score=51.34  Aligned_cols=46  Identities=15%  Similarity=0.208  Sum_probs=36.8

Q ss_pred             eeCcCCCCCCCCCee-CCCCCcccHHHHHHHHhcC-CCCCCCcCCcCC
Q 041252           70 FVCPISLEPMQDPVT-LCTGQTYERSNILKWFSLG-RYTCPTTMQELW  115 (450)
Q Consensus        70 ~~Cpi~~~~m~dPv~-~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~  115 (450)
                      -.|+||.+++..=.. ..|||.|=..||.+||+.. ..+||.|+.+..
T Consensus        16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            469999998874332 2699999999999999863 378999998764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.18  E-value=0.00082  Score=65.78  Aligned_cols=257  Identities=11%  Similarity=0.048  Sum_probs=140.2

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM  230 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~  230 (450)
                      ...+++.+.+.+...|.-..-.+..+++..++   .+   =++..+.+=+.+. ++-++..|+.+|.++...+-.     
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~m~-----  137 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGK-EDSYRGPAVRALCQITDSTML-----  137 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSS-CHHHHHHHHHHHHHHCCTTTH-----
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCC-cHhHHHHHHHHHhcCCCHHHH-----
Confidence            44566677777777776666666666544221   11   1244555555554 678999999999988654311     


Q ss_pred             CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHH
Q 041252          231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR  310 (450)
Q Consensus       231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~  310 (450)
                       ....+.+...|.+.++-+|..|+-+...|....+   +.+  .+++..+-+++.+. ++.++.+|+.+|..++.++.. 
T Consensus       138 -~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p---e~v--~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~~d~~-  209 (355)
T 3tjz_B          138 -QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF---DVV--KRWVNEAQEAASSD-NIMVQYHALGLLYHVRKNDRL-  209 (355)
T ss_dssp             -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH---HHH--HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCHH-
T ss_pred             -HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH---HHH--HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhhchH-
Confidence             2346667777888899999999999999865443   333  25788888888876 688889999999999865421 


Q ss_pred             HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 041252          311 SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKI  389 (450)
Q Consensus       311 ~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~  389 (450)
                             ++..|+.-+..+.......-+.+|+.+... ++.-....  ...++.+...|.+.++.+.-.|+.++..+...
T Consensus       210 -------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~--~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~  280 (355)
T 3tjz_B          210 -------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD--SPLFDFIESCLRNKHEMVVYEAASAIVNLPGC  280 (355)
T ss_dssp             -------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------CCCCCSSHHHHHHHHHHHTC----
T ss_pred             -------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH--HHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence                   223334433222111122223344444332 11101111  23455666777788889998899999887552


Q ss_pred             CchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCcccccccc
Q 041252          390 APEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISKCKL  445 (450)
Q Consensus       390 ~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~i~~~~~  445 (450)
                      .. .    .. ..++..|..++.+. ++.+|-.|...|..+...  ....++.|+.
T Consensus       281 ~~-~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~--~P~~v~~~n~  327 (355)
T 3tjz_B          281 SA-K----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMK--HPSAVTACNL  327 (355)
T ss_dssp             -------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------
T ss_pred             CH-H----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHH--CcHHHHHHHH
Confidence            22 1    11 23346677777776 678888888877776655  4456666664

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.01  E-value=0.0005  Score=53.43  Aligned_cols=46  Identities=11%  Similarity=0.102  Sum_probs=38.6

Q ss_pred             eCcCCCCCCCCCe-eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           71 VCPISLEPMQDPV-TLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        71 ~Cpi~~~~m~dPv-~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      .||+|.-....=. +++|+|.||.+|+..|.+++..+||.|+.++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            5888887666533 789999999999999998888999999987654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=96.97  E-value=0.00073  Score=48.15  Aligned_cols=47  Identities=21%  Similarity=0.277  Sum_probs=39.0

Q ss_pred             eeeCcCCCCCCCCCeeCCCCC-----cccHHHHHHHHhc-CCCCCCCcCCcCC
Q 041252           69 VFVCPISLEPMQDPVTLCTGQ-----TYERSNILKWFSL-GRYTCPTTMQELW  115 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~~~g~-----ty~r~~I~~~~~~-~~~~cP~~~~~l~  115 (450)
                      .-.|.||++-..+|.+.||..     .|=++|+.+|+.. ++.+||.|+.++.
T Consensus         6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            457999998888888888653     7899999999984 5788999998764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.89  E-value=0.13  Score=45.06  Aligned_cols=105  Identities=12%  Similarity=0.087  Sum_probs=65.1

Q ss_pred             CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHH
Q 041252          231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEV  309 (450)
Q Consensus       231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~  309 (450)
                      +...+..++.+|+.+--.++.||..++..++..-+..     -...+..|+.+++...........++++..++ ..++.
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el-----~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL-----YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG-----HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH-----HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            3456778888888777788889888888887543321     13456777777765444445556667777776 34433


Q ss_pred             HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252          310 RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS  345 (450)
Q Consensus       310 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~  345 (450)
                      ...     .||.+..=.+-+++.++-+...+|..++
T Consensus       105 v~~-----vVp~lfanyrigd~kikIn~~yaLeeIa  135 (253)
T 2db0_A          105 VKS-----MIPVLFANYRIGDEKTKINVSYALEEIA  135 (253)
T ss_dssp             HHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHH
T ss_pred             HHh-----hHHHHHHHHhcCCccceecHHHHHHHHH
Confidence            222     2344555555566666666666666555

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.82  E-value=0.048  Score=53.22  Aligned_cols=238  Identities=11%  Similarity=0.002  Sum_probs=139.7

Q ss_pred             cchHHHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhh
Q 041252          120 TPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSL  199 (450)
Q Consensus       120 ~~n~~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~l  199 (450)
                      .+|..+++++.-+...-..    ..++.--.+..+.+-+.++++-.|..|++.|..+..  ++.-+.     ..+.+-+.
T Consensus        79 s~d~~lKrLvYLyl~~~~~----~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~  147 (355)
T 3tjz_B           79 SNDPTLRRMCYLTIKEMSC----IAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQA  147 (355)
T ss_dssp             CCCHHHHHHHHHHHHHHTT----TSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHH
Confidence            5788899998777654211    122322345567777888888899999999888853  222222     24566777


Q ss_pred             hCCCCChhhHHHHHHHHHhcCCCc-hhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHH
Q 041252          200 LGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLI  278 (450)
Q Consensus       200 L~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~  278 (450)
                      |.+. +.-++..|+-+...|.... +..     .+.+..+-+++.+.++.++.+|..+|..+...+         ...+.
T Consensus       148 L~d~-~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d---------~~a~~  212 (355)
T 3tjz_B          148 IVDK-VPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND---------RLAVS  212 (355)
T ss_dssp             HTCS-SHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC---------HHHHH
T ss_pred             cCCC-CHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc---------hHHHH
Confidence            7775 6789998888877765433 322     257899999999999999999999999996433         11345


Q ss_pred             HHHHHHhcCC--CccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhc
Q 041252          279 GLMRLVKNKR--HPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKD  356 (450)
Q Consensus       279 ~Lv~lL~~~~--~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~  356 (450)
                      .|+.-+....  ++-.+...++.+..++..++.   -.....++.|...|++.++.+.-.|+.++..+...+..   .. 
T Consensus       213 kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-  285 (355)
T 3tjz_B          213 KMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-  285 (355)
T ss_dssp             HHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-
Confidence            5565555431  222333333444344432200   01234566788888888999999999999888653321   22 


Q ss_pred             cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCc
Q 041252          357 CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP  391 (450)
Q Consensus       357 ~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~  391 (450)
                       ..++..|..++.+.++.++-.|+..|..+....|
T Consensus       286 -~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P  319 (355)
T 3tjz_B          286 -APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP  319 (355)
T ss_dssp             ---CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred             -HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence             2456677788888888999999988888887766

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=96.82  E-value=0.015  Score=58.43  Aligned_cols=236  Identities=16%  Similarity=0.167  Sum_probs=145.4

Q ss_pred             HHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCC--chHHHHHHhcC---------------C--CHHHHHHHHHH
Q 041252          196 ISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPA--KVSLLVDMLNE---------------G--SVETKINCTRL  256 (450)
Q Consensus       196 Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~~---------------~--~~~~~~~aa~~  256 (450)
                      ++..|....+...+.-++..|..|...++.|..+.+.+  .++.++.+++.               +  ..+.+-++..+
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~  251 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL  251 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence            34444432233455668888888888889998887643  36666554431               1  35678889999


Q ss_pred             HHHHhccCCChhhHhhhhhH--HHHHHHHHhcCCCccchhHHHHHHHHhccCh-----HHHHHHHhcCCHHHHHHhcCC-
Q 041252          257 IEKLMEEKDFRPEIVSSHRL--LIGLMRLVKNKRHPNGILPGLSLLRSICLLN-----EVRSLVVSIGAVPQLVELLPS-  328 (450)
Q Consensus       257 L~~La~~~~~~~~~~~~~g~--l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~-----~~~~~iv~~G~v~~Lv~lL~~-  328 (450)
                      +|-|+-..+... .+...+.  ++.|+.+++...-..+.+-++.+|+|+....     .....++-.|.++.++..|.. 
T Consensus       252 iWlLSF~~~~~~-~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~r  330 (480)
T 1ho8_A          252 IWLLTFNPVFAN-ELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSER  330 (480)
T ss_dssp             HHHHTTSHHHHH-HHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSS
T ss_pred             HHHHHcCHHHHH-HHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhC
Confidence            999976554333 3333333  3678888887544678889999999998543     222333322333556666633 


Q ss_pred             --CChhHHHHHHHHHHHh-------cCChhhHHH------------------------Hhc-cCCChHHHHHHHhcC---
Q 041252          329 --LDPDCLQLALCILDAL-------SSLPEGKLA------------------------LKD-CANTIPNTVRLLMRV---  371 (450)
Q Consensus       329 --~~~~~~~~al~~L~~L-------~~~~e~r~~------------------------i~~-~~g~i~~Lv~lL~~~---  371 (450)
                        .|+++.+.--.+...|       ++-++.+.+                        +.+ +-..+..|+++|...   
T Consensus       331 k~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~  410 (480)
T 1ho8_A          331 KYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRN  410 (480)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccc
Confidence              3666655444333333       222322222                        222 112578889999742   


Q ss_pred             -------ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH-HHhhc
Q 041252          372 -------SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL-CSLNY  434 (450)
Q Consensus       372 -------s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~-ls~~~  434 (450)
                             ++.+..-|+.=|..++++.|+. +..+-+-|+=..++.+|.+. ++.+|..|...+.. +..||
T Consensus       411 ~~~~~s~d~~~laVAc~Digefvr~~P~g-r~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~~~~  479 (480)
T 1ho8_A          411 GDVNAKQEKIIIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIGYTF  479 (480)
T ss_dssp             TCCCSHHHHHHHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHHHSC
T ss_pred             cccccCCCcceEEeecccHHHHHHHCcch-hHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcC
Confidence                   3556666777777888888743 44555779988889999887 78999998876654 44444

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.77  E-value=0.17  Score=55.24  Aligned_cols=194  Identities=12%  Similarity=0.006  Sum_probs=121.7

Q ss_pred             ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHH
Q 041252          205 SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRL  283 (450)
Q Consensus       205 ~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~l  283 (450)
                      ++.+++.++..|..+..        .+...++.+++.|.. .++.+|..++.++.-- .....+      ...+..|+..
T Consensus       521 ~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~alglA-yaGTGn------~~aIq~LL~~  585 (963)
T 4ady_A          521 HGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIALA-YAGTGN------NSAVKRLLHV  585 (963)
T ss_dssp             CHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHH-TTTSCC------HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcCCCC------HHHHHHHHHH
Confidence            34455555555544332        234567888888874 5777777766665432 222222      2345767777


Q ss_pred             HhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChH
Q 041252          284 VKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL-PSLDPDCLQLALCILDALSSLPEGKLALKDCANTIP  362 (450)
Q Consensus       284 L~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~  362 (450)
                      +.+..+..++..|+.+|.-+...++        ..++.++++| .+.++.++..|..+|..++....+ ..      +|.
T Consensus       586 ~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~------aid  650 (963)
T 4ady_A          586 AVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QS------AID  650 (963)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HH------HHH
T ss_pred             hccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HH------HHH
Confidence            6655566788888888888764432        3567777755 567899999999999999754322 22      344


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcccCchhHH-HHHHhcChHHHHHHHHHc-CCCHHHHHHHHHHHHHHH
Q 041252          363 NTVRLLMRVSEDCTQYALSILWSICKIAPEECS-SAAVDAGLAAKLFLVIQS-GCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       363 ~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~-~~~~~~G~i~~L~~ll~s-~~~~~~k~~A~~lL~~ls  431 (450)
                      .|..++......+++.|+.+|..+.....+... +.   ++....|...... ..++.++-.|+...-++-
T Consensus       651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv---a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~  718 (963)
T 4ady_A          651 VLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQV---ADINKNFLSVITNKHQEGLAKFGACVAQGIMN  718 (963)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTH---HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHH---HHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            677777777889999999999998876543210 11   2334445555553 224667777766666553

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.43  E-value=0.028  Score=57.32  Aligned_cols=243  Identities=14%  Similarity=0.119  Sum_probs=147.5

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhh-----CCCC-------ChhhHHHHHHHHH
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLL-----GPFT-------SHAVGSEAVGVLV  217 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL-----~~~~-------~~~v~~~Al~~L~  217 (450)
                      -.+.|+..|-+...+.|..|+-.||.+.+.+...--.....+. ...++++     .+++       -..|++.++.+|.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            4566777788889999999999999998876421000011111 2233322     3322       2357888777777


Q ss_pred             hcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHH
Q 041252          218 NLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGL  297 (450)
Q Consensus       218 ~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al  297 (450)
                      .+ .+-+..     -..+..|+..+....-++|..+.-.|..+   .+...   .=.++++.++.-|.+. +.+++..|+
T Consensus       254 aL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~---~Ld~Vv~aVL~GL~D~-DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVE---DKDGLCRKLVSLLSSP-DEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCC---CHHHHHHHHHHHTTCS-SHHHHHHHH
T ss_pred             HH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHH---HHHHHHHHHHhhcCCc-ccHHHHHHH
Confidence            76 432221     34566666666777899999999889888   11111   1256678888888876 688999999


Q ss_pred             HHHHHhccChHHHHHHHhcCCHHHHHHhcCCC-C-hhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHH
Q 041252          298 SLLRSICLLNEVRSLVVSIGAVPQLVELLPSL-D-PDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDC  375 (450)
Q Consensus       298 ~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~-~-~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~  375 (450)
                      .+|.-++ .++....+     +..+-+.|.+. + ..........|+.|++.+..   ....+.-+|.|.-.+.+....+
T Consensus       321 etLiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSV  391 (800)
T 3oc3_A          321 ELLCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEV  391 (800)
T ss_dssp             HHHTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHH
T ss_pred             HHhhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHH
Confidence            9999998 22111111     12233333222 1 23445556677777766531   1222567888888888888999


Q ss_pred             HHHHHHHHHHhcccCchhHHHHHHhcChHHHHHH-HHHcCCCHHHHHHHHHHHH
Q 041252          376 TQYALSILWSICKIAPEECSSAAVDAGLAAKLFL-VIQSGCNPVLKQRSAELLK  428 (450)
Q Consensus       376 ~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~-ll~s~~~~~~k~~A~~lL~  428 (450)
                      +..++.+|..+.  .          ..++..+.+ ++-.. .+.+++.+..+-+
T Consensus       392 R~AVL~TL~tfL--~----------~~~LRLIFQNILLE~-neeIl~lS~~VWk  432 (800)
T 3oc3_A          392 RTSILNMVKNLS--E----------ESIDFLVAEVVLIEE-KDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHTTTCC--C----------HHHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--h----------hhHHHHHHHHHHhCC-cHHHHHHHHHHHH
Confidence            999988887765  1          112333333 33333 5777777776665

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.27  E-value=0.00085  Score=64.19  Aligned_cols=46  Identities=20%  Similarity=0.297  Sum_probs=36.7

Q ss_pred             eeCcCCCCCCCC----Cee----CCCCCcccHHHHHHHHhcC-C---------CCCCCcCCcCC
Q 041252           70 FVCPISLEPMQD----PVT----LCTGQTYERSNILKWFSLG-R---------YTCPTTMQELW  115 (450)
Q Consensus        70 ~~Cpi~~~~m~d----Pv~----~~~g~ty~r~~I~~~~~~~-~---------~~cP~~~~~l~  115 (450)
                      ..|+||...+.+    |-.    ..|||.|-..||.+|+... +         ..||.|+++++
T Consensus       309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            469999999887    533    3699999999999999741 1         46999998764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.82  E-value=0.29  Score=53.52  Aligned_cols=101  Identities=17%  Similarity=0.109  Sum_probs=67.2

Q ss_pred             CHHHHHHhc-CCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh-cCChHHHHHHHHHHHHhcccCchhHH
Q 041252          318 AVPQLVELL-PSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM-RVSEDCTQYALSILWSICKIAPEECS  395 (450)
Q Consensus       318 ~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~  395 (450)
                      +|+.|+..+ .+.+..++..|+.+|..+.-..         ...++.++++|. ..++.++..|..+|..++..++..  
T Consensus       578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~---------~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--  646 (963)
T 4ady_A          578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD---------YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--  646 (963)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS---------CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHhhccCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--
Confidence            355555555 3446677787887777765332         124667776554 467889999999998888766521  


Q ss_pred             HHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252          396 SAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD  436 (450)
Q Consensus       396 ~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~  436 (450)
                       .     ++..|..++. +.++.+++.|...|.++..-..+
T Consensus       647 -~-----aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtnn  680 (963)
T 4ady_A          647 -S-----AIDVLDPLTK-DPVDFVRQAAMIALSMILIQQTE  680 (963)
T ss_dssp             -H-----HHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCCT
T ss_pred             -H-----HHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCcc
Confidence             2     3455555554 44889999999999987765443

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.74  E-value=0.007  Score=58.71  Aligned_cols=63  Identities=14%  Similarity=0.299  Sum_probs=52.3

Q ss_pred             eeeCcCCCCCCCCCee-CCCCCc--ccHHHHHHHHhc-CCCCCCCcCCcCCCCCCcchHHHHHHHHH
Q 041252           69 VFVCPISLEPMQDPVT-LCTGQT--YERSNILKWFSL-GRYTCPTTMQELWDDSVTPNKTLYHLIHT  131 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~-~~~g~t--y~r~~I~~~~~~-~~~~cP~~~~~l~~~~l~~n~~L~~~I~~  131 (450)
                      .+.|||+...|..|+- ..|.|.  ||...+.+...+ +...||.|++.+...+|..+.-+.+.++.
T Consensus       249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~  315 (371)
T 3i2d_A          249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN  315 (371)
T ss_dssp             ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred             eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence            5899999999999996 469998  999888887653 56789999999988899888877765543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.12  Score=48.41  Aligned_cols=185  Identities=15%  Similarity=0.087  Sum_probs=114.7

Q ss_pred             HHHHhhccchHHHHHHHHHHHHHHHHcHHH--HH-HHHhhCC-hHHHHhhhCCCCChhhHHHHHHHHHhcCCC---chh-
Q 041252          154 LLGTLKKVKGQARVQALKELHQIAAAHASA--RK-TMVDEGG-VALISSLLGPFTSHAVGSEAVGVLVNLTLD---SES-  225 (450)
Q Consensus       154 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~--r~-~i~~~G~-i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~---~~~-  225 (450)
                      +-+.|.+.+...|..|+..|..+....+..  .. .+...+. .+.+-..+... +..++..++.+|..+...   ... 
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            557788889999999999999887543211  11 1112233 34455666654 678888888888765431   111 


Q ss_pred             hh--hccCCCchHHHHHH-hcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHH
Q 041252          226 KT--NLMQPAKVSLLVDM-LNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRS  302 (450)
Q Consensus       226 k~--~i~~~g~i~~Lv~l-L~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~  302 (450)
                      +.  ...-...++.|+.- |.+....++..|..++..++.......      ..++.++..+.++ +|.++..++..|..
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~K-npkv~~~~l~~l~~  165 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKK-LPKLIAAAANCVYE  165 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence            11  11124457777764 777888999999888888764332211      1245555666665 68888888887776


Q ss_pred             hccC--hH--HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252          303 ICLL--NE--VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL  347 (450)
Q Consensus       303 Ls~~--~~--~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~  347 (450)
                      +-..  ..  +-...+ ..+++.+..+|.+.++.++..|..++..+-..
T Consensus       166 ~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          166 LMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            6421  10  111111 12345677788899999999999999888654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.24  E-value=0.0078  Score=47.48  Aligned_cols=34  Identities=18%  Similarity=0.282  Sum_probs=28.9

Q ss_pred             CeeeCcCCCC-CCCCCee--CCCCCcccHHHHHHHHh
Q 041252           68 SVFVCPISLE-PMQDPVT--LCTGQTYERSNILKWFS  101 (450)
Q Consensus        68 ~~~~Cpi~~~-~m~dPv~--~~~g~ty~r~~I~~~~~  101 (450)
                      +++.|+||.+ ...+||.  +.|||+||+.|++.|..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            3578999996 5899998  89999999999999443

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=95.00  E-value=0.017  Score=55.81  Aligned_cols=63  Identities=11%  Similarity=0.287  Sum_probs=52.5

Q ss_pred             CeeeCcCCCCCCCCCee-CCCCCc--ccHHHHHHHHhc-CCCCCCCcCCcCCCCCCcchHHHHHHHH
Q 041252           68 SVFVCPISLEPMQDPVT-LCTGQT--YERSNILKWFSL-GRYTCPTTMQELWDDSVTPNKTLYHLIH  130 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~-~~~g~t--y~r~~I~~~~~~-~~~~cP~~~~~l~~~~l~~n~~L~~~I~  130 (450)
                      -.+.|||+...|+.|+- ..|.|.  ||...+-+...+ +...||.|++.+...+|.-+.-+.+.+.
T Consensus       214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~  280 (360)
T 4fo9_A          214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN  280 (360)
T ss_dssp             EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred             EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence            35789999999999996 469998  999998887664 4678999999998888888877776554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.76  E-value=0.94  Score=49.91  Aligned_cols=217  Identities=14%  Similarity=0.201  Sum_probs=140.0

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      .++.++....+....+|..|-.++..+...-+.+  .+  ...+|.|+..|.+...=..+..|+.++..|+...  ...+
T Consensus        96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~  169 (986)
T 2iw3_A           96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPV--AI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQV  169 (986)
T ss_dssp             THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHH
Confidence            3555666666655678887777888777643222  11  3347888888864422346667888888777532  2333


Q ss_pred             cC--CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252          230 MQ--PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN  307 (450)
Q Consensus       230 ~~--~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~  307 (450)
                      ..  +..||.+-..+-..-++++..|..++..++..-+ +..+   ...+|.|++.+.++   +-+-.+...|..-..-.
T Consensus       170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~-n~d~---~~~~~~~~~~~~~p---~~~~~~~~~l~~~tfv~  242 (986)
T 2iw3_A          170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD-NKDI---ERFIPSLIQCIADP---TEVPETVHLLGATTFVA  242 (986)
T ss_dssp             HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC-CTTT---GGGHHHHHHHHHCT---THHHHHHHHHTTCCCCS
T ss_pred             HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC-Ccch---hhhHHHHHHHhcCh---hhhHHHHHHhhcCeeEe
Confidence            22  5678888888877789999999999999974322 1122   35689999998764   22344444444333221


Q ss_pred             H----HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC---hhhHHHHhccCCChHHHHHHHhcCC-hHHHHHH
Q 041252          308 E----VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL---PEGKLALKDCANTIPNTVRLLMRVS-EDCTQYA  379 (450)
Q Consensus       308 ~----~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~---~e~r~~i~~~~g~i~~Lv~lL~~~s-~~~~e~A  379 (450)
                      +    .-..     .+|.|.+=|......++..++-++.|||.-   |..-..|.  ...+|.|-+.....+ +++++.|
T Consensus       243 ~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~  315 (986)
T 2iw3_A          243 EVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVT  315 (986)
T ss_dssp             CCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHH
T ss_pred             eecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHH
Confidence            1    1111     357777778878889999999999999975   44444555  367777777766654 7777777


Q ss_pred             HHHHHHh
Q 041252          380 LSILWSI  386 (450)
Q Consensus       380 ~~~L~~L  386 (450)
                      -.++..|
T Consensus       316 ~~a~~~l  322 (986)
T 2iw3_A          316 LRALKTL  322 (986)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666665

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=94.71  E-value=0.52  Score=43.83  Aligned_cols=178  Identities=14%  Similarity=0.116  Sum_probs=111.4

Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCC-hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh-hhcc
Q 041252          153 ELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGG-VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK-TNLM  230 (450)
Q Consensus       153 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~-i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k-~~i~  230 (450)
                      ++...|-+.+...+..|+..|......++  +..+..... ++.+.--+.+ .+..+...++.+|..+...-... ..+.
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d-~N~~v~~~~L~~L~~l~~~l~~~~y~~~  126 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFE-TNPAALIKVLELCKVIVELIRDTETPMS  126 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTS-CCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHhccccch
Confidence            45555656667778888888887765433  222222222 2222211223 25667777777777642110001 1122


Q ss_pred             C---CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252          231 Q---PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN  307 (450)
Q Consensus       231 ~---~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~  307 (450)
                      +   .-.+|.|+.-+......+|..+-.+|..+..       +.....+.+.++.-++++ +..++..++..+..+-...
T Consensus       127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~  198 (266)
T 2of3_A          127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSK-NARQRSECLLVIEYYITNA  198 (266)
T ss_dssp             HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Confidence            1   3468999999988888999999998888753       222334567777777776 5777777777777664111


Q ss_pred             HHHHHHHhcCCH---HHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252          308 EVRSLVVSIGAV---PQLVELLPSLDPDCLQLALCILDALS  345 (450)
Q Consensus       308 ~~~~~iv~~G~v---~~Lv~lL~~~~~~~~~~al~~L~~L~  345 (450)
                      ...    ...++   +.+..++.+.|..++..|+.++..+-
T Consensus       199 G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          199 GIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             CSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             CCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            000    24578   99999999999999999999888554

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.08  E-value=0.56  Score=44.58  Aligned_cols=176  Identities=13%  Similarity=0.070  Sum_probs=101.0

Q ss_pred             chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHH----HHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccC--CCch
Q 041252          162 KGQARVQALKELHQIAAAHASARKTMVDEGGVAL----ISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQ--PAKV  235 (450)
Q Consensus       162 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~----Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~--~g~i  235 (450)
                      +.+.+.-++..+|-++. ++.....+.+.+.-..    +...+.+......+--++.+++|+-.++..+..+..  ...+
T Consensus       115 P~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il  193 (304)
T 3ebb_A          115 PEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLM  193 (304)
T ss_dssp             CTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHH
T ss_pred             CHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence            34455556666666553 4444444544322222    334443322334566788999999888888776654  2345


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHh
Q 041252          236 SLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS  315 (450)
Q Consensus       236 ~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~  315 (450)
                      +.+...+.+.+..++..++.++.|++.........-....++..+..++....+.++.-.++-||.+|...+.....+.+
T Consensus       194 ~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak  273 (304)
T 3ebb_A          194 SHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAK  273 (304)
T ss_dssp             HHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence            55555555668999999999999997321000011112224555555665555677778888888888854444444444


Q ss_pred             -cCCHHHHHHhcCC-CChhHHHHHH
Q 041252          316 -IGAVPQLVELLPS-LDPDCLQLAL  338 (450)
Q Consensus       316 -~G~v~~Lv~lL~~-~~~~~~~~al  338 (450)
                       .|+-..+-..... ....+.+.|-
T Consensus       274 ~l~~~~~v~~~~~~~~~~kv~~~~~  298 (304)
T 3ebb_A          274 SLGVDSQIKKYSSVSEPAKVSECCR  298 (304)
T ss_dssp             HTTHHHHGGGGGGCCSSHHHHHHHH
T ss_pred             HcCHHHHHHHHHhCCCchhHHHHHH
Confidence             5655555555543 2344444443

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=93.62  E-value=0.14  Score=38.56  Aligned_cols=47  Identities=19%  Similarity=0.191  Sum_probs=38.6

Q ss_pred             eeeCcCCCCCCC-----CCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           69 VFVCPISLEPMQ-----DPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        69 ~~~Cpi~~~~m~-----dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      .-+|.||++-.-     +|.+++  |++..||.|.+-=.++|+..||.|+.++.
T Consensus        16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk   69 (93)
T 1weo_A           16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence            357999997533     466664  99999999999888889999999998875

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=93.59  E-value=0.75  Score=43.71  Aligned_cols=183  Identities=11%  Similarity=0.105  Sum_probs=104.0

Q ss_pred             hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchH----HHHHHhcC-CCHHHHHHHHHHHHHHhccCCCh
Q 041252          193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVS----LLVDMLNE-GSVETKINCTRLIEKLMEEKDFR  267 (450)
Q Consensus       193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~----~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~  267 (450)
                      +..+..++ .+ ..+.+-.++.+++.+..++..-..+.+...-.    .+...+.+ +++..+..+.+++.|+-.....+
T Consensus       105 l~~l~kil-~W-P~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~  182 (304)
T 3ebb_A          105 LQILWKAI-NC-PEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ  182 (304)
T ss_dssp             HHHHHHHH-TS-CTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred             HHHHHHHH-cC-CHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence            45666666 44 44666777888887777765555554432222    23333432 35667888899999996655444


Q ss_pred             hhHhhh-hhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHH-hcCCHHHHHHhcC-CCChhHHHHHHHHHHHh
Q 041252          268 PEIVSS-HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVV-SIGAVPQLVELLP-SLDPDCLQLALCILDAL  344 (450)
Q Consensus       268 ~~~~~~-~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv-~~G~v~~Lv~lL~-~~~~~~~~~al~~L~~L  344 (450)
                      ..++.. ..++..+...+.+ .+.+++.+++.++.|++.........- ..-++..+..++. ..+.+....++-+|.+|
T Consensus       183 ~~l~~~~~~il~~~~~~~~~-~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL  261 (304)
T 3ebb_A          183 KLMMSQRESLMSHAIELKSG-SNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL  261 (304)
T ss_dssp             HHHHHTHHHHHHHHHGGGSS-CCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            444322 2234444443333 367788899999999984311000000 0113334444443 35789999999999999


Q ss_pred             cCChhhHHHHhccCCChHHHHHHHhcC--ChHHHHHH
Q 041252          345 SSLPEGKLALKDCANTIPNTVRLLMRV--SEDCTQYA  379 (450)
Q Consensus       345 ~~~~e~r~~i~~~~g~i~~Lv~lL~~~--s~~~~e~A  379 (450)
                      ...+.....+.+ .-++...++-+...  +.++.+.|
T Consensus       262 ~~~~~~~~~lak-~l~~~~~v~~~~~~~~~~kv~~~~  297 (304)
T 3ebb_A          262 ISDDSNAVQLAK-SLGVDSQIKKYSSVSEPAKVSECC  297 (304)
T ss_dssp             HTTCHHHHHHHH-HTTHHHHGGGGGGCCSSHHHHHHH
T ss_pred             HhCChhHHHHHH-HcCHHHHHHHHHhCCCchhHHHHH
Confidence            976555555554 34455555555443  23444443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.31  E-value=0.55  Score=43.10  Aligned_cols=96  Identities=20%  Similarity=0.211  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCC-----hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHH
Q 041252          332 DCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVS-----EDCTQYALSILWSICKIAPEECSSAAVDAGLAAK  406 (450)
Q Consensus       332 ~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s-----~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~  406 (450)
                      .-.-+|+..|..++++|+.|..+.+ +...--|.-.|...+     +-.+-.+++++.++.+.+..++.....+.+.+|.
T Consensus        71 nRVcnaLaLlQcvAshpetr~~Fl~-a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl  149 (268)
T 2fv2_A           71 NRVCNALALLQCVASHPETRSAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL  149 (268)
T ss_dssp             HHHHHHHHHHHHHHHCTTTHHHHHH-TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred             hHHHHHHHHHHHHHcCcchhhHHHH-ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence            3457788899999999999999998 776666666666654     4567779999999999877677777789999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHH
Q 041252          407 LFLVIQSGCNPVLKQRSAELLKL  429 (450)
Q Consensus       407 L~~ll~s~~~~~~k~~A~~lL~~  429 (450)
                      .+..|+.| ++..|.-|.-++..
T Consensus       150 CLrime~G-selSKtvAtfIlqK  171 (268)
T 2fv2_A          150 CLRIMESG-SELSKTVATFILQK  171 (268)
T ss_dssp             HHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHhhc-cHHHHHHHHHHHHH
Confidence            99999999 77788777765544

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.10  E-value=0.69  Score=42.47  Aligned_cols=150  Identities=14%  Similarity=0.149  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC-C---hhhHHHHHHHHHhcCCCc--hhhhhccCCCchHHH
Q 041252          165 ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT-S---HAVGSEAVGVLVNLTLDS--ESKTNLMQPAKVSLL  238 (450)
Q Consensus       165 ~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~-~---~~v~~~Al~~L~~Ls~~~--~~k~~i~~~g~i~~L  238 (450)
                      -...|+.-|+-++ .|++.|..+.++...--|-.+|.... +   +-.+-.+++++..|...+  +.-..+.+.+.||..
T Consensus        72 RVcnaLaLlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC  150 (268)
T 2fv2_A           72 RVCNALALLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC  150 (268)
T ss_dssp             HHHHHHHHHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence            3455777777777 57889999999986666777775432 1   234556788888877543  455567788999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhh-------hhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHH
Q 041252          239 VDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSS-------HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS  311 (450)
Q Consensus       239 v~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~-------~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~  311 (450)
                      ++.+..|+.-.|.-|+.++..+..++.....+-..       ...+..++.-+....++...+...++-..|+.++..|.
T Consensus       151 Lrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~  230 (268)
T 2fv2_A          151 LRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRARE  230 (268)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHH
Confidence            99999999999999999999886555333322211       22344444444444456677899999999999998887


Q ss_pred             HHHh
Q 041252          312 LVVS  315 (450)
Q Consensus       312 ~iv~  315 (450)
                      .+..
T Consensus       231 aL~~  234 (268)
T 2fv2_A          231 ALRQ  234 (268)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.51  E-value=6.6  Score=38.40  Aligned_cols=177  Identities=15%  Similarity=0.155  Sum_probs=106.1

Q ss_pred             HHHHHHHhhccchHH-HHHHHHHHHHHHHHcHHHH-HHHHhhCChHHHHhhhCC----------CCChhhHHHHHHHHHh
Q 041252          151 ASELLGTLKKVKGQA-RVQALKELHQIAAAHASAR-KTMVDEGGVALISSLLGP----------FTSHAVGSEAVGVLVN  218 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~-~~~Al~~L~~l~~~~~~~r-~~i~~~G~i~~Lv~lL~~----------~~~~~v~~~Al~~L~~  218 (450)
                      ....+..|.+..... ..+.+..|+.--..++-.+ +.+. .+|+..|+.+|..          ..+...+...+.+|..
T Consensus        68 P~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka  146 (383)
T 3eg5_B           68 AMMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA  146 (383)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence            445666666543322 2234555554444443333 3333 6788888888842          1134567788888988


Q ss_pred             cCCCchhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--C-hhhHhhhh---------hHHHHHHHHHh
Q 041252          219 LTLDSESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD--F-RPEIVSSH---------RLLIGLMRLVK  285 (450)
Q Consensus       219 Ls~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~--~-~~~~~~~~---------g~l~~Lv~lL~  285 (450)
                      +-.+......++ .+..+..|+..|.+.++.++..+..+|..++..++  . ...++.+.         .-+..++..|+
T Consensus       147 lmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          147 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             HTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             HhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            887776666554 57899999999999999999999999998876543  2 23332221         12455666665


Q ss_pred             cCCCccchhHHHHHHHHhcc---ChHH----HHHHHhcCCHHHHHHhcCCC
Q 041252          286 NKRHPNGILPGLSLLRSICL---LNEV----RSLVVSIGAVPQLVELLPSL  329 (450)
Q Consensus       286 ~~~~~~~~~~al~aL~~Ls~---~~~~----~~~iv~~G~v~~Lv~lL~~~  329 (450)
                      .+.+.+.+.+++..+-.+..   +-+.    |..+...|..+.+-. |+..
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~  276 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREI  276 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTS
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcC
Confidence            53344445555555555542   2233    444556676665555 5443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.50  E-value=2.3  Score=38.54  Aligned_cols=136  Identities=15%  Similarity=0.167  Sum_probs=83.3

Q ss_pred             hhCChHHHHhhhCCC----------CChhhHHHHHHHHHhcCCCchhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHH
Q 041252          189 DEGGVALISSLLGPF----------TSHAVGSEAVGVLVNLTLDSESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLI  257 (450)
Q Consensus       189 ~~G~i~~Lv~lL~~~----------~~~~v~~~Al~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L  257 (450)
                      ..+|+..|+.+|...          .+...+...+.+|..+.........++ .+..+..|+..|.+.++.++..+..+|
T Consensus        41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL  120 (233)
T 2f31_A           41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  120 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            467888888877421          123556778888888887776666554 578999999999999999999999999


Q ss_pred             HHHhccCC--C-hhhHhhhhh---------HHHHHHHHHhcCCCccchhHHHHHHHHhccC---hH----HHHHHHhcCC
Q 041252          258 EKLMEEKD--F-RPEIVSSHR---------LLIGLMRLVKNKRHPNGILPGLSLLRSICLL---NE----VRSLVVSIGA  318 (450)
Q Consensus       258 ~~La~~~~--~-~~~~~~~~g---------~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~---~~----~~~~iv~~G~  318 (450)
                      ..++..++  . ...+..+..         -+..++..++...+.+.+.+++..+-.+...   -+    .|..+...|.
T Consensus       121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl  200 (233)
T 2f31_A          121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL  200 (233)
T ss_dssp             HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred             HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence            88875543  3 333322211         2334555554332333444555555444422   22    3444555665


Q ss_pred             HHHHHH
Q 041252          319 VPQLVE  324 (450)
Q Consensus       319 v~~Lv~  324 (450)
                      .+.+-.
T Consensus       201 ~~il~~  206 (233)
T 2f31_A          201 HQVLQE  206 (233)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554443

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=92.26  E-value=0.15  Score=46.72  Aligned_cols=48  Identities=17%  Similarity=0.218  Sum_probs=37.8

Q ss_pred             eeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhc-CCCCCCCcCCcCCC
Q 041252           69 VFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSL-GRYTCPTTMQELWD  116 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~-~~~~cP~~~~~l~~  116 (450)
                      ...|.||.++..-=+.-+ |++.|-+.|+.+|+.. +...||.|+.+.+.
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            567999999888443322 8999999999999985 35689999987544

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=91.66  E-value=1.5  Score=40.70  Aligned_cols=189  Identities=9%  Similarity=0.067  Sum_probs=110.0

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh---hhHhhhhh-HHHHHHHHHhcCCCccchhHHHHHHHHhccC--h-
Q 041252          235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR---PEIVSSHR-LLIGLMRLVKNKRHPNGILPGLSLLRSICLL--N-  307 (450)
Q Consensus       235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~---~~~~~~~g-~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~--~-  307 (450)
                      +| +-+-|.+.+-..|..|...|..+.......   ...+...+ ..+.+-..+.+. +..++..++.+|..++..  . 
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~   89 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASS   89 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC--
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhh
Confidence            44 557788899999999998888775332110   00111111 223444555554 577788888888887631  1 


Q ss_pred             ---HHHHHHHhcCCHHHHHHh-cCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252          308 ---EVRSLVVSIGAVPQLVEL-LPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL  383 (450)
Q Consensus       308 ---~~~~~iv~~G~v~~Lv~l-L~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  383 (450)
                         .......-...++.|++= |.+....++..|..+|..++........      .++.++..+.+.+++++..++..|
T Consensus        90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l~~l  163 (278)
T 4ffb_C           90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAANCV  163 (278)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHHHHH
Confidence               112222234567888864 7778888999988888777532211111      123444555667899998888888


Q ss_pred             HHhccc-CchhH-HHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          384 WSICKI-APEEC-SSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       384 ~~L~~~-~~~~~-~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      ..+-.. ..... ....+. .+++.+..++.+. ++.+|..|..++--+-..
T Consensus       164 ~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          164 YELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHG-DRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCS-SHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHH
Confidence            776432 11110 111111 2334455666665 899999999888766544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=91.47  E-value=4.5  Score=36.54  Aligned_cols=148  Identities=16%  Similarity=0.096  Sum_probs=93.3

Q ss_pred             hhHHHHHHHHHhcC---C-------CccchhHHHHHHHHhccChHHHHHHHh-cCCHHHHHHhcCCCChhHHHHHHHHHH
Q 041252          274 HRLLIGLMRLVKNK---R-------HPNGILPGLSLLRSICLLNEVRSLVVS-IGAVPQLVELLPSLDPDCLQLALCILD  342 (450)
Q Consensus       274 ~g~l~~Lv~lL~~~---~-------~~~~~~~al~aL~~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~al~~L~  342 (450)
                      .+++..|+.+|..-   .       +......++.+|+.|..+......+.+ .+++..|+..|.+.++.++..++.+|.
T Consensus        42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~  121 (233)
T 2f31_A           42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  121 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            46677777777531   1       122355888999999988877777776 678999999999889999999999999


Q ss_pred             HhcCChh--h-HHHHhc---------cCCChHHHHHHHhcCC-hHHHHHHHHHHHHhcccCch-----hHHHHHHhcChH
Q 041252          343 ALSSLPE--G-KLALKD---------CANTIPNTVRLLMRVS-EDCTQYALSILWSICKIAPE-----ECSSAAVDAGLA  404 (450)
Q Consensus       343 ~L~~~~e--~-r~~i~~---------~~g~i~~Lv~lL~~~s-~~~~e~A~~~L~~L~~~~~~-----~~~~~~~~~G~i  404 (450)
                      .+|..++  | ...+.+         ...-...+|+.+...+ ...+-.++..+-.+....++     ..+.+....|..
T Consensus       122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~  201 (233)
T 2f31_A          122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH  201 (233)
T ss_dssp             HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred             HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence            9997643  6 554433         1224556676665433 33444444444444444332     124455567775


Q ss_pred             HHHHHHHHcCCCHHHHHH
Q 041252          405 AKLFLVIQSGCNPVLKQR  422 (450)
Q Consensus       405 ~~L~~ll~s~~~~~~k~~  422 (450)
                      ..+- -++...++.....
T Consensus       202 ~il~-~l~~~~~~~L~~Q  218 (233)
T 2f31_A          202 QVLQ-ELREIENEDMKVQ  218 (233)
T ss_dssp             HHHH-HHHHCCCHHHHHH
T ss_pred             HHHH-HHhccCCHHHHHH
Confidence            5554 4444446665544

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=91.00  E-value=2.3  Score=46.94  Aligned_cols=256  Identities=7%  Similarity=0.058  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC-----CCChhhHHHHHHHHHhcCCCchhhhhccCC-----Cc
Q 041252          165 ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGP-----FTSHAVGSEAVGVLVNLTLDSESKTNLMQP-----AK  234 (450)
Q Consensus       165 ~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~-----~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~-----g~  234 (450)
                      .|..|...|..++....   +.+.. -.++.+...+..     ..+-..++.|+.++..++.....+..-+..     ..
T Consensus       377 ~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l  452 (960)
T 1wa5_C          377 RRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV  452 (960)
T ss_dssp             HHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred             cHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence            56667777777776432   22211 112333333431     112346677788777775432111111111     22


Q ss_pred             hHH----HHHHhcCC---CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252          235 VSL----LVDMLNEG---SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN  307 (450)
Q Consensus       235 i~~----Lv~lL~~~---~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~  307 (450)
                      .+.    ++..|.+.   ++-+|..|+++|..+++.-  ..+.  -..+++.++..|.+. ++.++..|+.||.+++...
T Consensus       453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~--l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~  527 (960)
T 1wa5_C          453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQ--LIELMPILATFLQTD-EYVVYTYAAITIEKILTIR  527 (960)
T ss_dssp             HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHH--HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHH--HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcc
Confidence            232    33334555   8899999999999997642  1221  245678888888765 5778899999999998631


Q ss_pred             H---------HHHHHHh--cCCHHHHHHhcCCCC-----hhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhc
Q 041252          308 E---------VRSLVVS--IGAVPQLVELLPSLD-----PDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMR  370 (450)
Q Consensus       308 ~---------~~~~iv~--~G~v~~Lv~lL~~~~-----~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~  370 (450)
                      +         .+..+..  ...++.|+.++....     ....+.++.+|..++.. .+.-.....  ..++.|+..+..
T Consensus       528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~  605 (960)
T 1wa5_C          528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTI  605 (960)
T ss_dssp             SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHH
T ss_pred             cccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHH
Confidence            1         1222221  234555666665431     11334556666555432 111111111  234455555543


Q ss_pred             C-----ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          371 V-----SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       371 ~-----s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      .     +......++.+|..+......+.. .....-.++.+..+++... ......+..++..+...
T Consensus       606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~iL~~~~-~~~~~~~~~i~~~l~~~  671 (960)
T 1wa5_C          606 MAKNPSNPRFTHYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTVFSEDI-QEFIPYVFQIIAFVVEQ  671 (960)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHTTC-TTTHHHHHHHHHHHHHH
T ss_pred             HHhCCCCcHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHHhhh-HhhHHHHHHHHHHHHHh
Confidence            1     234556677777777765222222 2334567788888887763 34445555555554433

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=90.08  E-value=1.3  Score=43.50  Aligned_cols=116  Identities=17%  Similarity=0.163  Sum_probs=83.1

Q ss_pred             cCCHHHHHHhcC-----------CCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252          316 IGAVPQLVELLP-----------SLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW  384 (450)
Q Consensus       316 ~G~v~~Lv~lL~-----------~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~  384 (450)
                      .+|+..|+.+|.           ..+......++.+|+.+..+..|...+..+..+|..|+..|.+.++.++..|+.+|.
T Consensus       108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~  187 (383)
T 3eg5_B          108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  187 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            455666666662           124577888999999999999999999998999999999999889999999999999


Q ss_pred             HhcccCc-hh---HHHHH-------HhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252          385 SICKIAP-EE---CSSAA-------VDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       385 ~L~~~~~-~~---~~~~~-------~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls  431 (450)
                      .+|.... +.   ..-.+       -+..-+..++..+.++.....+-.+..++..+-
T Consensus       188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li  245 (383)
T 3eg5_B          188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI  245 (383)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence            9998764 21   11111       123446777777766545566666666655543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=88.79  E-value=7.3  Score=37.20  Aligned_cols=209  Identities=11%  Similarity=0.163  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHH----HHHHhhCChHHHHhhh
Q 041252          125 LYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASAR----KTMVDEGGVALISSLL  200 (450)
Q Consensus       125 L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r----~~i~~~G~i~~Lv~lL  200 (450)
                      ...+.++.+..             +.+..|+..|..-+-+.|..+.....++.......|    ..+...  -..|.-++
T Consensus        67 ~~qL~~ei~~~-------------dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~--peil~~L~  131 (341)
T 1upk_A           67 VAQLAQELYNS-------------GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLL  131 (341)
T ss_dssp             HHHHHHHHHHH-------------SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHH
T ss_pred             HHHHHHHHHHh-------------CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC--HHHHHHHH
Confidence            45556666655             345567777777777888887777666655332211    122221  22333344


Q ss_pred             CCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-ChhhHhhh--hhHH
Q 041252          201 GPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD-FRPEIVSS--HRLL  277 (450)
Q Consensus       201 ~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~-~~~~~~~~--~g~l  277 (450)
                      ....+.++.-.+=.+|+.+..++...+.+...+.+-.+.+....++-++...|-.++..|-..+. ...+.+..  .-++
T Consensus       132 ~gYe~~diAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff  211 (341)
T 1upk_A          132 KGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFF  211 (341)
T ss_dssp             HGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHH
T ss_pred             HhhccchhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHH
Confidence            33334556666667888888888888888888888899999999999999999999998853322 22222211  2355


Q ss_pred             HHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHh----cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh
Q 041252          278 IGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS----IGAVPQLVELLPSLDPDCLQLALCILDALSSLPE  349 (450)
Q Consensus       278 ~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~----~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e  349 (450)
                      ...-++|.++ +=-+++.++..|..|-.+..|...|..    ..-+..++.+|++.+..++-.|..+......+|.
T Consensus       212 ~~y~~Ll~S~-NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~  286 (341)
T 1upk_A          212 SEYEKLLHSE-NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN  286 (341)
T ss_dssp             HHHHHHTTCS-SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHhcCC-cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence            5666677776 345788999999999877776655553    4577888999999999999999999987766543

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=88.05  E-value=12  Score=36.68  Aligned_cols=145  Identities=15%  Similarity=0.163  Sum_probs=89.0

Q ss_pred             hhCChHHHHhhhCCC----------CChhhHHHHHHHHHhcCCCchhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHH
Q 041252          189 DEGGVALISSLLGPF----------TSHAVGSEAVGVLVNLTLDSESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLI  257 (450)
Q Consensus       189 ~~G~i~~Lv~lL~~~----------~~~~v~~~Al~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L  257 (450)
                      ..+|+..|+.+|...          .+...+...+.+|..+.........++ .+.++..++..|.+.++.++..+..+|
T Consensus        45 ~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL  124 (386)
T 2bnx_A           45 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  124 (386)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            367788888777421          123567778888888887776666554 578999999999999999999999999


Q ss_pred             HHHhccCC--C-hhhHhhhh---------hHHHHHHHHHhcCCCccchhHHHHHHHHhccC---hH----HHHHHHhcCC
Q 041252          258 EKLMEEKD--F-RPEIVSSH---------RLLIGLMRLVKNKRHPNGILPGLSLLRSICLL---NE----VRSLVVSIGA  318 (450)
Q Consensus       258 ~~La~~~~--~-~~~~~~~~---------g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~---~~----~~~~iv~~G~  318 (450)
                      ..++..++  . ...++.+.         .-+..+|..+....+.+.+.+++..+-.|...   -+    .|..+...|.
T Consensus       125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL  204 (386)
T 2bnx_A          125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL  204 (386)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred             HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence            88875543  2 22232221         12344666665433444455555555555422   22    3555556676


Q ss_pred             HHHHHHhcCCCChhH
Q 041252          319 VPQLVELLPSLDPDC  333 (450)
Q Consensus       319 v~~Lv~lL~~~~~~~  333 (450)
                      .+.+-.+=...++.+
T Consensus       205 ~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          205 HQVLQELREIENEDM  219 (386)
T ss_dssp             HHHHHHHTTCCCHHH
T ss_pred             HHHHHHHhccCChhH
Confidence            665544433344433

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=87.39  E-value=15  Score=36.86  Aligned_cols=121  Identities=10%  Similarity=0.058  Sum_probs=87.0

Q ss_pred             ccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHH
Q 041252          160 KVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLV  239 (450)
Q Consensus       160 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv  239 (450)
                      +++...+.-|..-|....+.-++....     ++..++.+.... +..++..|+..|-.++.+ ++-..     ....|+
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~  106 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDE-DVSIRRQAIKELPQFATG-ENLPR-----VADILT  106 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHH
Confidence            345677888999998888877766554     478889999875 788999999999999988 44333     367788


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHH
Q 041252          240 DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLR  301 (450)
Q Consensus       240 ~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~  301 (450)
                      ++|.++++......-.+|..|...+.        .+.+.+|+.-+..+ +..+++.++..|.
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~-~e~~Rer~lkFi~  159 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQG-EDIVRERAIKFLS  159 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHccc-chHHHHHHHHHHH
Confidence            89998888888887788877754432        33455555555554 4556666666553

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=87.23  E-value=4.7  Score=37.33  Aligned_cols=137  Identities=10%  Similarity=0.097  Sum_probs=89.3

Q ss_pred             CCCHHHHHHHHHHHHHHh---ccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-ChHHHHHHHhcCCH
Q 041252          244 EGSVETKINCTRLIEKLM---EEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LNEVRSLVVSIGAV  319 (450)
Q Consensus       244 ~~~~~~~~~aa~~L~~La---~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v  319 (450)
                      +.+..+...+..+|..+.   ...+.+-.-....-++|.|+.=+-+. ...++..+-.+|..++. .+..       ..+
T Consensus        98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~-------~v~  169 (266)
T 2of3_A           98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL-------KMT  169 (266)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH-------HHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH-------HHH
Confidence            567778777777777663   11111111112245778887765443 34466666666666652 1212       245


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCCh---HHHHHHHhcCChHHHHHHHHHHHHhcccCchh
Q 041252          320 PQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTI---PNTVRLLMRVSEDCTQYALSILWSICKIAPEE  393 (450)
Q Consensus       320 ~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i---~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~  393 (450)
                      +.+++-+.+.+...++.++..|..+-.. .|-.   . ..++   +.+.+++...+..+++.|+.++..+..+..+.
T Consensus       170 ~~l~~g~ksKN~R~R~e~l~~l~~li~~-~G~~---~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~  241 (266)
T 2of3_A          170 PMLLDALKSKNARQRSECLLVIEYYITN-AGIS---P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ  241 (266)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHH-HCSG---G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHh-cCCC---c-cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence            5677777888999999999998888643 2222   2 3578   99999999989999999999998876655433

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=85.98  E-value=15  Score=40.28  Aligned_cols=135  Identities=16%  Similarity=0.068  Sum_probs=80.5

Q ss_pred             CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHH---h-cCCCccchhHHHHHHHHhccChHHHHHHHhcCCHH
Q 041252          245 GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLV---K-NKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVP  320 (450)
Q Consensus       245 ~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL---~-~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~  320 (450)
                      .+...++.|..++..+++.-....     ...++.++.++   . +..++.++..++++|..++..-....... ..+++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~  549 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAIN  549 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHH
Confidence            455688888888888875422111     12334444443   2 11267778899999998884321111111 13456


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhcc-CCChHHHHHHHhc--CChHHHHHHHHHHHHhcccC
Q 041252          321 QLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC-ANTIPNTVRLLMR--VSEDCTQYALSILWSICKIA  390 (450)
Q Consensus       321 ~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~-~g~i~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~  390 (450)
                      .|+..| +  +.++..|+.+|..++..  .+..+... ...+..+.+++.+  .+...++.+..++..++...
T Consensus       550 ~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          550 LLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             HHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence            666666 2  78999999999999942  33333321 2455666677766  35678888888888887643

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=84.93  E-value=15  Score=40.09  Aligned_cols=177  Identities=14%  Similarity=0.099  Sum_probs=100.4

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc--CCCccchhHHHHHHHHhccChHHHHHHHhcCCHH
Q 041252          243 NEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN--KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVP  320 (450)
Q Consensus       243 ~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~--~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~  320 (450)
                      .+.+...++.+..++..++..-...     ....++.++..+..  ..++.++..++++|..++..-....... ..+++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHH
Confidence            4457788999999999987542211     01234445554432  1256677888888888874322111222 36888


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhcc-CCChHHHHHHHhc--CChHHHHHHHHHHHHhcccCchhHHHH
Q 041252          321 QLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC-ANTIPNTVRLLMR--VSEDCTQYALSILWSICKIAPEECSSA  397 (450)
Q Consensus       321 ~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~-~g~i~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~~~~~  397 (450)
                      .|+..|.+  +.++..|+.+|..++..  .+..+... ...+..+.+++.+  .+...++.+..++..+....+.+....
T Consensus       533 ~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~  608 (963)
T 2x19_B          533 LVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK  608 (963)
T ss_dssp             HHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            89988864  88999999999999842  22223211 1233344455554  246788888888888876553121222


Q ss_pred             HHhcChHHHHHHHHH----cCCCHHHHHHHHHHHHHH
Q 041252          398 AVDAGLAAKLFLVIQ----SGCNPVLKQRSAELLKLC  430 (450)
Q Consensus       398 ~~~~G~i~~L~~ll~----s~~~~~~k~~A~~lL~~l  430 (450)
                      .+ ...++++...++    .+.++..+.....++..+
T Consensus       609 ~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l  644 (963)
T 2x19_B          609 NL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL  644 (963)
T ss_dssp             HH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            22 234444444332    333455555444444433

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=84.92  E-value=27  Score=33.23  Aligned_cols=208  Identities=13%  Similarity=0.071  Sum_probs=143.9

Q ss_pred             ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCC----hhhHh-hhhhHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 041252          229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF----RPEIV-SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI  303 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~----~~~~~-~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L  303 (450)
                      +...+.+..|+..|..=+-+.|..++.+..++......    ..+.+ ....++..|+   ..-.+++.--.+-..|+..
T Consensus        74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~---~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLL---KGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHH---HGGGSTTTHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHH---HhhccchhHhHHHHHHHHH
Confidence            34567888999999877999999999998888643211    11122 2222333333   3323455666677778888


Q ss_pred             ccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc-CChhhHHHHhc--cCCChHHHHHHHhcCChHHHHHHH
Q 041252          304 CLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS-SLPEGKLALKD--CANTIPNTVRLLMRVSEDCTQYAL  380 (450)
Q Consensus       304 s~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~e~r~~i~~--~~g~i~~Lv~lL~~~s~~~~e~A~  380 (450)
                      ..++.....+...+.+-.+.+.+..++-++...|..++..|- .+..-...+..  -.-.....-++|.+.+--+++.++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            889988888888888999999999999999999999999875 34443344433  012455667788888889999999


Q ss_pred             HHHHHhcccCchh-H-HHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCccc
Q 041252          381 SILWSICKIAPEE-C-SSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFI  440 (450)
Q Consensus       381 ~~L~~L~~~~~~~-~-~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~i  440 (450)
                      ..|..+-...... . .+-+....-+..++.+|++. +..++-.|--+.|++-.|...++-|
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I  291 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPI  291 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHH
Confidence            9999886654322 1 12222334456667777776 7889999999999988887666544

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=84.82  E-value=21  Score=34.74  Aligned_cols=148  Identities=17%  Similarity=0.106  Sum_probs=92.7

Q ss_pred             hhHHHHHHHHHhc----CC------CccchhHHHHHHHHhccChHHHHHHHh-cCCHHHHHHhcCCCChhHHHHHHHHHH
Q 041252          274 HRLLIGLMRLVKN----KR------HPNGILPGLSLLRSICLLNEVRSLVVS-IGAVPQLVELLPSLDPDCLQLALCILD  342 (450)
Q Consensus       274 ~g~l~~Lv~lL~~----~~------~~~~~~~al~aL~~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~al~~L~  342 (450)
                      .+++..|+.+|..    +.      +......++.+|+.|..+......+.+ .+++..|+..|.+.++.++..++.+|.
T Consensus        46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~  125 (386)
T 2bnx_A           46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  125 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            4567777777753    11      112355888999999988777777776 588999999999888999999999999


Q ss_pred             HhcCChh--h-HHHHhc---------cCCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccCch-----hHHHHHHhcChH
Q 041252          343 ALSSLPE--G-KLALKD---------CANTIPNTVRLLMRV-SEDCTQYALSILWSICKIAPE-----ECSSAAVDAGLA  404 (450)
Q Consensus       343 ~L~~~~e--~-r~~i~~---------~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~-----~~~~~~~~~G~i  404 (450)
                      .+|..++  | ...+.+         ...-...+|+.+... +...+-.++..+-.+....++     ..+.+....|..
T Consensus       126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~  205 (386)
T 2bnx_A          126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH  205 (386)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred             HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence            9997643  5 444432         123455677777643 334444444444444444433     124555567775


Q ss_pred             HHHHHHHHcCCCHHHHHH
Q 041252          405 AKLFLVIQSGCNPVLKQR  422 (450)
Q Consensus       405 ~~L~~ll~s~~~~~~k~~  422 (450)
                      ..+ .-++...++.+...
T Consensus       206 ~il-~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          206 QVL-QELREIENEDMKVQ  222 (386)
T ss_dssp             HHH-HHHTTCCCHHHHHH
T ss_pred             HHH-HHHhccCChhHHHH
Confidence            554 44444335554433

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=84.55  E-value=13  Score=40.94  Aligned_cols=184  Identities=12%  Similarity=0.095  Sum_probs=103.8

Q ss_pred             HHHHhhcc---chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch------
Q 041252          154 LLGTLKKV---KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE------  224 (450)
Q Consensus       154 Lv~~L~~~---~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~------  224 (450)
                      ++..|.+.   .+-+|..|++.|..++..-  ....  -...++.++..|.+. +..++..|+.+|.++....+      
T Consensus       460 v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~--l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~  534 (960)
T 1wa5_C          460 IAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQ--LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPA  534 (960)
T ss_dssp             THHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHH--HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCC
T ss_pred             hHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHH--HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhccccccccc
Confidence            34445655   5678999999999887531  1121  123467778777654 57789999999999776421      


Q ss_pred             ---hhhhccC--CCchHHHHHHhcCCC---HH--HHHHHHHHHHHHhcc-CCChhhHhhhhhHHHHHHHHHhc----CCC
Q 041252          225 ---SKTNLMQ--PAKVSLLVDMLNEGS---VE--TKINCTRLIEKLMEE-KDFRPEIVSSHRLLIGLMRLVKN----KRH  289 (450)
Q Consensus       225 ---~k~~i~~--~g~i~~Lv~lL~~~~---~~--~~~~aa~~L~~La~~-~~~~~~~~~~~g~l~~Lv~lL~~----~~~  289 (450)
                         .+..+..  ...++.|..+++...   ..  ..+.+..+|..++.. .+.....  ...+++.|+..+..    +.+
T Consensus       535 ~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~--~~~l~~~L~~~l~~~~~~~~~  612 (960)
T 1wa5_C          535 FIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPL--FPQLLAQFIEIVTIMAKNPSN  612 (960)
T ss_dssp             BSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGG--HHHHHHHHHHHHHHHTTSCCC
T ss_pred             ccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHhCCCC
Confidence               2333432  345666677776641   11  234556666665421 1111111  22355566655543    223


Q ss_pred             ccchhHHHHHHHHhcc--ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252          290 PNGILPGLSLLRSICL--LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS  345 (450)
Q Consensus       290 ~~~~~~al~aL~~Ls~--~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~  345 (450)
                      +........+|..+..  .++.... .+.-.+|.+..+|.....+..+.++.++..+.
T Consensus       613 ~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          613 PRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence            3344456677776663  2333222 33446778888886555566666666666554

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=84.29  E-value=5.9  Score=44.08  Aligned_cols=145  Identities=9%  Similarity=-0.062  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCC--cc--chhHHHHHHHHhccChHHHHHHHhcCCHH
Q 041252          245 GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRH--PN--GILPGLSLLRSICLLNEVRSLVVSIGAVP  320 (450)
Q Consensus       245 ~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~--~~--~~~~al~aL~~Ls~~~~~~~~iv~~G~v~  320 (450)
                      .+-..++.++.+++.++..-....+.-.-..+++.|+.++..+..  +.  ++..++++|...+..-....... ..++.
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~  543 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL  543 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence            468899999999999986543221111123467778887764211  11  22245566666653222111111 12445


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhc-cCC----ChHHH----HHHHhcCChHHHHHHHHHHHHhcccCc
Q 041252          321 QLVELLPSLDPDCLQLALCILDALSSLPEGKLALKD-CAN----TIPNT----VRLLMRVSEDCTQYALSILWSICKIAP  391 (450)
Q Consensus       321 ~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~-~~g----~i~~L----v~lL~~~s~~~~e~A~~~L~~L~~~~~  391 (450)
                      .|++.|.+.++.+++.|+++|.+||..  .+..+.. ..|    -++.+    .+.+...+......+..++..+....+
T Consensus       544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            577777777889999999999999963  3333321 011    23333    333333456666777777777776655


Q ss_pred             h
Q 041252          392 E  392 (450)
Q Consensus       392 ~  392 (450)
                      .
T Consensus       622 ~  622 (1023)
T 4hat_C          622 S  622 (1023)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=83.66  E-value=9.4  Score=36.72  Aligned_cols=107  Identities=14%  Similarity=0.242  Sum_probs=81.7

Q ss_pred             hcCCCc-hhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHH
Q 041252          218 NLTLDS-ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPG  296 (450)
Q Consensus       218 ~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~a  296 (450)
                      +|-.++ +.-.-+++.+++..+..+.+-.+.++......+|...+.....+..  .-...+|-+++.+.-..+.++.-..
T Consensus       268 ~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~eDdvvYSG  345 (619)
T 3c2g_A          268 GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPDDEVIYSG  345 (619)
T ss_dssp             HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCCcceEEec
Confidence            444444 5567889999999999999999999999999999988654433221  2234577788877755567788899


Q ss_pred             HHHHHHhccChH-HHHHHHhcCCHHHHHHhc
Q 041252          297 LSLLRSICLLNE-VRSLVVSIGAVPQLVELL  326 (450)
Q Consensus       297 l~aL~~Ls~~~~-~~~~iv~~G~v~~Lv~lL  326 (450)
                      .+.|.|...+.. .+...+..|+|+.|-..+
T Consensus       346 TGFLSNVVAHKq~VKelAI~~nAI~LLh~~I  376 (619)
T 3c2g_A          346 TGFLSNVVAHKQHVKDIAIRSNAIFLLHTII  376 (619)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             chHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence            999999987765 666677899999998887

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=83.61  E-value=4.1  Score=34.71  Aligned_cols=78  Identities=12%  Similarity=0.120  Sum_probs=61.5

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252          360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT  437 (450)
Q Consensus       360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~  437 (450)
                      ++..|.+-|.+.++.++-.|+.+|-.+.+++......++.....+..|+.++....++.+|+++..++..-+..+.+.
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  130 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD  130 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            345677778888899999999999999998865555566666777888888876567899999999998877765543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=83.45  E-value=0.83  Score=41.93  Aligned_cols=31  Identities=13%  Similarity=0.033  Sum_probs=16.0

Q ss_pred             HHHHHHhhCChHHHHhhhCCCCChhhHHHHHH
Q 041252          183 ARKTMVDEGGVALISSLLGPFTSHAVGSEAVG  214 (450)
Q Consensus       183 ~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~  214 (450)
                      .|...++.-..+.|..+++.. +..++..++.
T Consensus        90 VR~~aA~~L~~~~L~~ll~D~-d~~VR~~aA~  120 (244)
T 1lrv_A           90 VRRAVAYRLPREQLSALMFDE-DREVRITVAD  120 (244)
T ss_dssp             HHHHHHTTSCSGGGGGTTTCS-CHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHcCC-CHHHHHHHHH
Confidence            333333332345566666654 5666666555

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=81.78  E-value=4.4  Score=40.65  Aligned_cols=118  Identities=18%  Similarity=0.182  Sum_probs=76.5

Q ss_pred             CccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHH
Q 041252          289 HPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRL  367 (450)
Q Consensus       289 ~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~l  367 (450)
                      ++..++-|+..+...- ..++-...     ++.+++++..+.+..++..|++.|-.+|.. +.-..+.+      .|+++
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kiaD------vL~Ql  108 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVAD------ILTQL  108 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHHH------HHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHHH------HHHHH
Confidence            4556666666666554 33443332     456788888888889999999999999987 55555544      89999


Q ss_pred             HhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041252          368 LMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK  428 (450)
Q Consensus       368 L~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~  428 (450)
                      |....+.-....-.+|..+-+.++         .|.+..|...+.++ .+.+|+++...|+
T Consensus       109 Lqtdd~~E~~~V~~sL~sllk~Dp---------k~tl~~lf~~i~~~-~e~~Rer~lkFi~  159 (507)
T 3u0r_A          109 LQTDDSAEFNLVNNALLSIFKMDA---------KGTLGGLFSQILQG-EDIVRERAIKFLS  159 (507)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             HhccchHHHHHHHHHHHHHHhcCh---------HHHHHHHHHHHccc-chHHHHHHHHHHH
Confidence            997766555555555555555554         13344445555445 5778887665553

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=81.73  E-value=0.67  Score=42.57  Aligned_cols=80  Identities=15%  Similarity=0.107  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCC
Q 041252          126 YHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTS  205 (450)
Q Consensus       126 ~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~  205 (450)
                      ...|..++..++.           .   +..++.+.+..+|..|+..|                  ....+..++... +
T Consensus        41 ~~ri~~~~~~~p~-----------l---~~~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~-~   87 (244)
T 1lrv_A           41 GRQIDRFFRNNPH-----------L---AVQYLADPFWERRAIAVRYS------------------PVEALTPLIRDS-D   87 (244)
T ss_dssp             HHHHHHHHHHCGG-----------G---GGGGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCS-S
T ss_pred             HHHHHHHHcCCHH-----------H---HHHHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCc-C
Confidence            4567777766431           0   12234666777787777643                  134566777665 6


Q ss_pred             hhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHH
Q 041252          206 HAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTR  255 (450)
Q Consensus       206 ~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~  255 (450)
                      ..++..++..|   .              .+.|..+++..+..+|..++.
T Consensus        88 ~~VR~~aA~~L---~--------------~~~L~~ll~D~d~~VR~~aA~  120 (244)
T 1lrv_A           88 EVVRRAVAYRL---P--------------REQLSALMFDEDREVRITVAD  120 (244)
T ss_dssp             HHHHHHHHTTS---C--------------SGGGGGTTTCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence            78888777542   1              123455566667777766665

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=81.11  E-value=66  Score=34.87  Aligned_cols=218  Identities=13%  Similarity=0.075  Sum_probs=118.3

Q ss_pred             ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHh---cCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHH
Q 041252          205 SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDML---NEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLM  281 (450)
Q Consensus       205 ~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL---~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv  281 (450)
                      +-..++.++.++..++..-..    .....++.++..+   ..+++.++..+++++..++..-......+  ..+++.|+
T Consensus       462 ~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l~  535 (963)
T 2x19_B          462 SWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLVL  535 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHH
Confidence            334667777777776643211    0123455555554   23578899999999998864211111111  24567777


Q ss_pred             HHHhcCCCccchhHHHHHHHHhccChHHHHHHHh--cCCHHHHHHhcCC--CChhHHHHHHHHHHHhcCC--hhhHHHHh
Q 041252          282 RLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS--IGAVPQLVELLPS--LDPDCLQLALCILDALSSL--PEGKLALK  355 (450)
Q Consensus       282 ~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~--~G~v~~Lv~lL~~--~~~~~~~~al~~L~~L~~~--~e~r~~i~  355 (450)
                      ..+.+   +.++..|+.+|.+++..  .+..+..  ...+..|..++..  .+...+..+..++..++..  ++.+....
T Consensus       536 ~~l~~---~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~  610 (963)
T 2x19_B          536 HALGN---PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL  610 (963)
T ss_dssp             HHTTC---GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHhCC---chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            76643   67889999999999832  1111221  1233344455543  3567888888888888754  25555555


Q ss_pred             ccCCChHHHHHHHhc----C-ChHHHH---HHHHHHHHhccc----Cchh----------------HHHHHHhcChHHHH
Q 041252          356 DCANTIPNTVRLLMR----V-SEDCTQ---YALSILWSICKI----APEE----------------CSSAAVDAGLAAKL  407 (450)
Q Consensus       356 ~~~g~i~~Lv~lL~~----~-s~~~~e---~A~~~L~~L~~~----~~~~----------------~~~~~~~~G~i~~L  407 (450)
                      +  ..++++...+..    . ++..+.   ....+|..+.+.    .+..                ...........+.+
T Consensus       611 ~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  688 (963)
T 2x19_B          611 H--SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI  688 (963)
T ss_dssp             H--HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH
Confidence            4  456666665542    1 333333   233333333221    1000                00111233456666


Q ss_pred             HHHHHc-CCCHHHHHHHHHHHHHHHhhcC
Q 041252          408 FLVIQS-GCNPVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       408 ~~ll~s-~~~~~~k~~A~~lL~~ls~~~~  435 (450)
                      ..++.. ..++...+.+..+++.+.....
T Consensus       689 ~~~l~~~~~~~~v~e~~~~~l~~~~~~~~  717 (963)
T 2x19_B          689 QKVLSKWLNDAQVVEAVCAIFEKSVKTLL  717 (963)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence            666643 2356778888888887655533

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=80.45  E-value=3.9  Score=36.89  Aligned_cols=78  Identities=9%  Similarity=0.151  Sum_probs=61.2

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252          360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT  437 (450)
Q Consensus       360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~  437 (450)
                      ++..|.+-|.+.++.++-.|+.+|-.+.++.......++.....+..|..++....++.+|++...++..-+...++.
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  123 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE  123 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            355677888888999999999999999888765555566566666777778877667899999999999888775543

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=80.30  E-value=5.8  Score=40.78  Aligned_cols=185  Identities=16%  Similarity=0.115  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccC-CCchHHHHHHh
Q 041252          164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQ-PAKVSLLVDML  242 (450)
Q Consensus       164 ~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL  242 (450)
                      -+|+.++++|..+ ..=+..      ...+..++..+... .=+++..++-.|..+      +..+.+ .+.++.++.-|
T Consensus       243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL  308 (800)
T 3oc3_A          243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLL  308 (800)
T ss_dssp             HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHT
T ss_pred             ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhc
Confidence            4888899888887 421211      23344444433433 346787787777777      222222 56778888888


Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCC-ccchhHHHHHHHHhccChHHHHHHHhcCCHHH
Q 041252          243 NEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRH-PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQ  321 (450)
Q Consensus       243 ~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~-~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~  321 (450)
                      ...+.++|..||.+|.-++ ..+.      -..++..|-..|.+-.+ .......+..|..|+..+.+  .......||.
T Consensus       309 ~D~DDDVRAVAAetLiPIA-~p~~------l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPR  379 (800)
T 3oc3_A          309 SSPDEDIKLLSAELLCHFP-ITDS------LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKD  379 (800)
T ss_dssp             TCSSHHHHHHHHHHHTTSC-CSST------HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGG
T ss_pred             CCcccHHHHHHHHHhhhhc-chhh------HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHH
Confidence            8889999999999999987 2211      13345555566654312 22344566777787765531  1112367888


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHH-HHHHhcCChHHHHHHHHH
Q 041252          322 LVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNT-VRLLMRVSEDCTQYALSI  382 (450)
Q Consensus       322 Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~L-v~lL~~~s~~~~e~A~~~  382 (450)
                      |..+++..-..++..++.+|..+.. .          ..++.+ -.+|....+.+.+.+..+
T Consensus       380 L~PFLRHtITSVR~AVL~TL~tfL~-~----------~~LRLIFQNILLE~neeIl~lS~~V  430 (800)
T 3oc3_A          380 IFPCFTSPVPEVRTSILNMVKNLSE-E----------SIDFLVAEVVLIEEKDEIREMAIKL  430 (800)
T ss_dssp             TGGGGTCSSHHHHHHHHHHTTTCCC-H----------HHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             HHhhhcCCcHHHHHHHHHHHHHHHh-h----------hHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            8889998889999999999988871 1          122222 233445566777766665

>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A

Probab=80.02  E-value=1.5  Score=33.74  Aligned_cols=52  Identities=17%  Similarity=0.323  Sum_probs=39.0

Q ss_pred             CCeeeCcCCCCCCCCCeeCC-C-C----CcccHHHHHHHHhcCCCCCCCcCCcCCCCCC
Q 041252           67 PSVFVCPISLEPMQDPVTLC-T-G----QTYERSNILKWFSLGRYTCPTTMQELWDDSV  119 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dPv~~~-~-g----~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l  119 (450)
                      ++++.|||+.++-..=|-+. . |    --|+..++.+....|.. =|.+|++++...+
T Consensus        25 ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~-HPLSREpit~sMI   82 (102)
T 2kkx_A           25 LEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLP-HPLTREPITASII   82 (102)
T ss_dssp             TGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCC-CTTTCCCCCTTTE
T ss_pred             HHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCC-CCCccCCCCHhhE
Confidence            46789999999888877543 2 2    24999999999887543 4999988876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	450
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	2e-17
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	7e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-06
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-06
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	2e-12
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	1e-11
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	4e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	9e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	1e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	1e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	0.004
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-04
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	5e-04

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 74.7 bits (183), Expect = 2e-17
 Identities = 36/71 (50%), Positives = 42/71 (59%)

Query: 65  EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKT 124
           E P  F CPISLE M+DPV + TGQTYERS+I KW   G  TCP + + L    +TPN  
Sbjct: 4   EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63

Query: 125 LYHLIHTWFSQ 135
           L  LI  W   
Sbjct: 64  LKSLIALWCES 74

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.6 bits (164), Expect = 7e-15
 Identities = 19/71 (26%), Positives = 33/71 (46%)

Query: 65  EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKT 124
           +IP      IS E M++P    +G TY+R +I +      +  P T   L  + + PN  
Sbjct: 3   DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 62

Query: 125 LYHLIHTWFSQ 135
           +  +I  + S+
Sbjct: 63  MKEVIDAFISE 73

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (180), Expect = 8e-15
 Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 6/222 (2%)

Query: 212 AVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV 271
           AV  L+N   D+E     +    +  L  +LN+           ++ +L +++  R  I+
Sbjct: 1   AVVNLINYQDDAE-----LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 55

Query: 272 SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDP 331
            S +++  ++R ++N             L ++    E    +   G +P LV++L S   
Sbjct: 56  RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 115

Query: 332 DCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP 391
             L  A+  L  L    EG       A  +   V LL + +          L  +     
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-N 174

Query: 392 EECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433
           +E     + +G    L  ++++     L   ++ +LK+ S+ 
Sbjct: 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 37/261 (14%), Positives = 78/261 (29%), Gaps = 18/261 (6%)

Query: 139 LMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISS 198
           L+    + V  +A+ +                  +HQ++   AS    M     V+ I  
Sbjct: 25  LLNDEDQVVVNKAAVM------------------VHQLSKKEASRHAIMRSPQMVSAIVR 66

Query: 199 LLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIE 258
            +             G L NL+   E    + +   +  LV ML              + 
Sbjct: 67  TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126

Query: 259 KLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGA 318
            L+  ++     V     L  ++ L+         +    L        E + ++++ G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 319 VPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQY 378
              LV ++ +   + L      +  + S+          A  +      L   S+   Q 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 246

Query: 379 ALSILWSICKIAPEECSSAAV 399
            L  L ++   A ++     +
Sbjct: 247 CLWTLRNLSDAATKQEGMEGL 267

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 22/218 (10%)

Query: 169 ALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228
           AL+ L         A+  +    G+ ++  LL P +   +    VG++ NL L   +   
Sbjct: 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP 392

Query: 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKR 288
           L +   +  LV +L     +T+   +    +                        V+  R
Sbjct: 393 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ---------------------FVEGVR 431

Query: 289 HPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLP 348
               +      L  +      R ++  +  +P  V+LL S   +  ++A  +L  L+   
Sbjct: 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 491

Query: 349 EGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI 386
           E   A++           LL   +E    YA ++L+ +
Sbjct: 492 EAAEAIEA-EGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 2/134 (1%)

Query: 212 AVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV 271
           A+  LV L + +   T        +    +      E    CT  +  L  +   R  ++
Sbjct: 398 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR-IVI 456

Query: 272 SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDP 331
                +   ++L+ +    N       +L  +    E    + + GA   L ELL S + 
Sbjct: 457 RGLNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNE 515

Query: 332 DCLQLALCILDALS 345
                A  +L  +S
Sbjct: 516 GVATYAAAVLFRMS 529

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 59  AELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDS 118
            E   A+    F+ PI    M DPV L + +     + +    L   T P     L  D 
Sbjct: 12  EEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71

Query: 119 VTPNKTLYHLIHTWFSQKYLLMKKRSEDVQG 149
           + PN  L   I  W +++    K++S    G
Sbjct: 72  IRPNTELKEKIQRWLAER----KQQSGPSSG 98

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 63  LAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWF--SLGRYTCPTTMQELWDDSVT 120
           +  +  +  CPI LE +++PV+      + +  +LK      G   CP    ++   S+ 
Sbjct: 15  INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74

Query: 121 PNKTLYHLI 129
            +     L+
Sbjct: 75  ESTRFSQLV 83

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 4e-08
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 65  EIPSVF-VCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL 114
           E+ S F +C I  E  +D      G     S +  W       CP    E+
Sbjct: 18  EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (105), Expect = 9e-07
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 56  KMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115
           K++A    A       C I    + DPV       + R  IL+   +    CP+     +
Sbjct: 10  KLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69

Query: 116 -DDSVTPNKTLYHLIHT 131
             D  +P K+  +++++
Sbjct: 70  PTDLESPVKSFLNILNS 86

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 4/85 (4%)

Query: 63  LAEIPSVFVCPISLEPMQDPVTLCT-GQTYERSNILKWFSLGRYTCPTTMQELWDDSVTP 121
           L  +  +  C      +++PV L      +  + +      G   C       W   +  
Sbjct: 16  LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC---YTPAWIQDLKI 72

Query: 122 NKTLYHLIHTWFSQKYLLMKKRSED 146
           N+ L  +I      + LL      D
Sbjct: 73  NRQLDSMIQLCSKLRNLLHDNELSD 97

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (87), Expect = 1e-04
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 71  VCPISLEPMQDPVTLC-TGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKT 124
           +C IS +  + PV    +   +E+S + ++        P T + L  + +     
Sbjct: 2   LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-DTGNDPITNEPLSIEEIVEIVP 55

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 17/123 (13%), Positives = 37/123 (30%), Gaps = 3/123 (2%)

Query: 319 VPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQ 377
           +P+ V+ L S D     +    +          K  +      I   V LL   +++  Q
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSPNQNVQQ 62

Query: 378 YALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT 437
            A   L ++                   +   +++   N  ++++   LL   S      
Sbjct: 63  AAAGALRNLV-FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 438 TFI 440
             +
Sbjct: 122 EEL 124

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 296 GLSLLRSICLLN-EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLA 353
           G   ++  C  +   +  V  +G + +LV+LL S + +  Q A   L  L       KL 
Sbjct: 22  GAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81

Query: 354 LKDCANTIPNTVRLLMRVSEDCTQY-ALSILWSICK 388
            +   N I   V LL R      Q     +LW++  
Sbjct: 82  TRRQ-NGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 6/44 (13%), Positives = 8/44 (18%), Gaps = 4/44 (9%)

Query: 71  VCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL 114
            C       + P  L    T     +          CP      
Sbjct: 8   RCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPW 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	450
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.91
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.9
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.89
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.88
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.87
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.87
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.83
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.56
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.56
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.54
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.48
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.14
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.07
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.02
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.89
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.82
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.61
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.61
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.49
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.41
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.4
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.38
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.36
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.27
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.93
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.69
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.65
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.57
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.56
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.51
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.47
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.46
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.41
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.4
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.23
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.21
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.07
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.05
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.76
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.4
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.34
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.33
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	93.98
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.71
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.67
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	91.98
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	91.61
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.83
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	88.85
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	85.12

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-24  Score=224.45  Aligned_cols=278  Identities=17%  Similarity=0.154  Sum_probs=243.3

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHh-hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVD-EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK  226 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k  226 (450)
                      .+.++.|+.+|++.+..++..|+..|..++..+ ..|..+.. .|+++.|+.+|++..+.++++.|+.+|.+|+.+++++
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~-~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            456899999999999999999999999998654 45555554 5779999999987557789999999999999999999


Q ss_pred             hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-
Q 041252          227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-  305 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-  305 (450)
                      ..+++.|+++.|+.+|++++++++..|+++|.+|+.+++..+..+...|+++.|+.+|+++ ++.++..++.+|.+++. 
T Consensus        95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~  173 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc-ChHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999988887777788999999999999886 68899999999999995 


Q ss_pred             ChHHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252          306 LNEVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW  384 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~  384 (450)
                      +.+++..+++.|+++.|+.++... ...+++.+..+|.+++.+++++..+.+ .|+++.|++++...+...+++++++|.
T Consensus       174 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~a~~~l~  252 (529)
T d1jdha_         174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLR  252 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhh-hhhhhhHHHHhcccchhhhhhhhhHHH
Confidence            567788888999999999999544 578999999999999999999999998 899999999999999999999999999


Q ss_pred             HhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          385 SICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       385 ~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      +++......    ....|+++.|+.++.++ ++.+++.|..+|..++.+
T Consensus       253 ~ls~~~~~~----~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~~~  296 (529)
T d1jdha_         253 NLSDAATKQ----EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCN  296 (529)
T ss_dssp             HHHTTCTTC----SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTT
T ss_pred             hccccccch----hhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhccc
Confidence            997655321    12358899999999887 788999999999887644

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-23  Score=217.01  Aligned_cols=281  Identities=16%  Similarity=0.138  Sum_probs=242.0

Q ss_pred             hcHHHHHHHhhc-cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch-hh
Q 041252          149 GRASELLGTLKK-VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE-SK  226 (450)
Q Consensus       149 ~~i~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~-~k  226 (450)
                      +.++.++..|++ .+.+.+..|+..|..++ .+++++..+++.|+++.|+.+|++. +.+++..|+++|.+++.+.+ .+
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~  136 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-CCchhHHHHHHCCCHHHHHHHhCCC-CHHHHHHHHHHHHHhhcccchhh
Confidence            457888888876 45778999999999998 4678999999999999999999875 78999999999999887654 56


Q ss_pred             hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252          227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL  306 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~  306 (450)
                      ..+.+.|+++.|+.+|++++++++..++.+|.+|+..++.....+...|+++.|+.++....+...+..+..+|.+++.+
T Consensus       137 ~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~  216 (529)
T d1jdha_         137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  216 (529)
T ss_dssp             HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred             hHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence            67788999999999999999999999999999998777666677788899999999998765567888999999999999


Q ss_pred             hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252          307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI  386 (450)
Q Consensus       307 ~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  386 (450)
                      ++++..+++.|+++.|+.++.+.+.+++..++++|.+++......  ... .|+++.|++++.+.+..+++.|+.+|+++
T Consensus       217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~--~~~-~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l  293 (529)
T d1jdha_         217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLGSDDINVVTCAAGILSNL  293 (529)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCC-HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch--hhh-hhcchhhhhhcccccHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999998654332  222 47899999999999999999999999999


Q ss_pred             cccCchhHHHHHHhcChHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhhcC
Q 041252          387 CKIAPEECSSAAVDAGLAAKLFLVIQS-GCNPVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       387 ~~~~~~~~~~~~~~~G~i~~L~~ll~s-~~~~~~k~~A~~lL~~ls~~~~  435 (450)
                      +..++ ..+..+.+.|+++.|+.++.. ...+..++.|...|+.++.+..
T Consensus       294 ~~~~~-~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~  342 (529)
T d1jdha_         294 TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ  342 (529)
T ss_dssp             TTTCH-HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred             ccchh-HHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhh
Confidence            98765 345667789999999988853 3357888999999998876533

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.1e-22  Score=203.09  Aligned_cols=283  Identities=16%  Similarity=0.182  Sum_probs=234.2

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHH-HHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chh
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHAS-ARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SES  225 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~-~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~  225 (450)
                      ...+++++..|.+++.+.+..|+.+|+++...+.. ....+.+.|++|.|+++|++..+.+++..|+++|.+++.+ ++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            35799999999999999999999999998754332 2567889999999999998765678999999999999764 577


Q ss_pred             hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhh-------------------------------
Q 041252          226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSH-------------------------------  274 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~-------------------------------  274 (450)
                      +..+.+.|+++.++.+|.+++.++++.|+++|.+|+.+++..+..+...                               
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  171 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  171 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999976543333222222                               


Q ss_pred             ----------------hHHHHHHHHHhcCCCccchhHHHHHHHHhccCh-HHHHHHHhcCCHHHHHHhcCCCChhHHHHH
Q 041252          275 ----------------RLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN-EVRSLVVSIGAVPQLVELLPSLDPDCLQLA  337 (450)
Q Consensus       275 ----------------g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~-~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~a  337 (450)
                                      ++++.|+.++.++ +++++..++++|.+|+.++ +.+..+.+.|+++.|++++.+++.+++..+
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~a  250 (434)
T d1q1sc_         172 NLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA  250 (434)
T ss_dssp             HHTCCCTTCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred             HHhhcccccchhhhhhhHHHHHHHHHhcc-ccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhch
Confidence                            3444555555554 4667788999999999654 455666789999999999999999999999


Q ss_pred             HHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCC
Q 041252          338 LCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCN  416 (450)
Q Consensus       338 l~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~  416 (450)
                      +.+|.+++.. ++.+..+.+ .|+++.+++++.+.++.+++.|+.+|.+++...+ +....+.+.|+++.++.++.++ +
T Consensus       251 l~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~~~i~~li~~l~~~-~  327 (434)
T d1q1sc_         251 LRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKA-D  327 (434)
T ss_dssp             HHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHSS-C
T ss_pred             hhhhhhHHhhhhHHHHHHHh-ccccchHHHhhcccchhhhHHHHHHHhhhccccc-hhHHHHhhhhhHHHHHHHHhcc-C
Confidence            9999999875 566777777 7999999999999999999999999999998765 4455667899999999999988 6


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 041252          417 PVLKQRSAELLKLCSLNY  434 (450)
Q Consensus       417 ~~~k~~A~~lL~~ls~~~  434 (450)
                      ...+..|..++..+....
T Consensus       328 ~~v~~~a~~~l~nl~~~~  345 (434)
T d1q1sc_         328 FKTQKEAAWAITNYTSGG  345 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHhcC
Confidence            889999999998887663

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-22  Score=200.75  Aligned_cols=280  Identities=18%  Similarity=0.235  Sum_probs=225.2

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cchhhhh
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSESKTN  228 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~k~~  228 (450)
                      .++.|++.|+++++++|..|+.+|.++|.+++++|+.+.+.|+||.|+++|++. +.+++..|+++|.+|+. +++++..
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            588999999999999999999999999998899999999999999999999875 78999999999999985 5688999


Q ss_pred             ccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhH-------------------------------------
Q 041252          229 LMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEI-------------------------------------  270 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~-------------------------------------  270 (450)
                      +.+.|+++.++.++.+ .+.+++..|+++|.+|+.........                                     
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            9999999999999875 58889999999999987543221110                                     


Q ss_pred             -------------------hhhhhHHHHHHHHHhc---------------------------------------------
Q 041252          271 -------------------VSSHRLLIGLMRLVKN---------------------------------------------  286 (450)
Q Consensus       271 -------------------~~~~g~l~~Lv~lL~~---------------------------------------------  286 (450)
                                         ....|+++.|+.++++                                             
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence                               1112455555554421                                             


Q ss_pred             -----------------------------------------------------CCCccchhHHHHHHHHhccChH-----
Q 041252          287 -----------------------------------------------------KRHPNGILPGLSLLRSICLLNE-----  308 (450)
Q Consensus       287 -----------------------------------------------------~~~~~~~~~al~aL~~Ls~~~~-----  308 (450)
                                                                           ..++..+..+..++.+++....     
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                                                 1111233455566777763321     


Q ss_pred             -HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC------ChHHHHHHHH
Q 041252          309 -VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV------SEDCTQYALS  381 (450)
Q Consensus       309 -~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~------s~~~~e~A~~  381 (450)
                       .+..+.+.|+++.|+.+|.+.+++++..++.+|.+|+.+++++..+.+  ++++.++.+|...      ++.+++.|+.
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~--~~i~~li~~L~~~~~~~~~~~~v~~~a~~  399 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACY  399 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH--hhHHHHHHHHhccccCcCCcHHHHHHHHH
Confidence             344555789999999999999999999999999999999999998875  6899999999753      3578899999


Q ss_pred             HHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          382 ILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       382 ~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      +|.+++..+++ .++.+++.|+++.|+.++.+..++..++.|..+|..|..+
T Consensus       400 ~L~~l~~~~~~-~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         400 TVRNLMASQPQ-LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHhcCCHH-HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            99999987764 4566778999999999999876788999999999988544

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3.2e-22  Score=199.76  Aligned_cols=280  Identities=17%  Similarity=0.190  Sum_probs=233.2

Q ss_pred             hhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hh
Q 041252          148 QGRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ES  225 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~  225 (450)
                      .|.++.|++.|++. +.++|..|+..|.+++..+++.+..+.+.|+++.++.+|.+. +.++++.|+++|.+++.+. +.
T Consensus        55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~-~~~~~~~a~~~L~nl~~~~~~~  133 (434)
T d1q1sc_          55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAF  133 (434)
T ss_dssp             TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccC-CHHHHHHHHHHHHHHhccchHH
Confidence            36789999999754 567899999999999988888999999999999999999875 7899999999999987643 33


Q ss_pred             hhhccCCCc-----------------------------------------------hHHHHHHhcCCCHHHHHHHHHHHH
Q 041252          226 KTNLMQPAK-----------------------------------------------VSLLVDMLNEGSVETKINCTRLIE  258 (450)
Q Consensus       226 k~~i~~~g~-----------------------------------------------i~~Lv~lL~~~~~~~~~~aa~~L~  258 (450)
                      +..+.+.|+                                               ++.++.++.+++++++..++++|.
T Consensus       134 ~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~  213 (434)
T d1q1sc_         134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  213 (434)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhc
Confidence            333333333                                               455666666777888888999999


Q ss_pred             HHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHH
Q 041252          259 KLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLA  337 (450)
Q Consensus       259 ~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~a  337 (450)
                      +|+..++.....+...|+++.|+.+++++ ++.++..++.+|.+++. +++.+..+++.|+++.|+.+|++.++++++.|
T Consensus       214 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a  292 (434)
T d1q1sc_         214 YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  292 (434)
T ss_dssp             HHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred             ccchhhhhhHHHHhhcccchhcccccccc-hhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHH
Confidence            99876655666667788999999999886 68889999999999985 55678888999999999999999999999999


Q ss_pred             HHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCC
Q 041252          338 LCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCN  416 (450)
Q Consensus       338 l~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~  416 (450)
                      +++|.+|+.. ++.+..+.+ .|+++.+++++.+.+..++..|+.+|.+++.....+....+.+.|+++.|+.+++++ +
T Consensus       293 ~~~L~~l~~~~~~~~~~i~~-~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~-d  370 (434)
T d1q1sc_         293 TWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-D  370 (434)
T ss_dssp             HHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSS-C
T ss_pred             HHHHhhhccccchhHHHHhh-hhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCC-C
Confidence            9999999975 556667777 799999999999999999999999999999877655566678999999999999887 6


Q ss_pred             HHHHHHHHHHHHHHH
Q 041252          417 PVLKQRSAELLKLCS  431 (450)
Q Consensus       417 ~~~k~~A~~lL~~ls  431 (450)
                      +.....+...|..+-
T Consensus       371 ~~~~~~~l~~l~~ll  385 (434)
T d1q1sc_         371 TKIIQVILDAISNIF  385 (434)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            778888877665543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=9.5e-22  Score=201.26  Aligned_cols=283  Identities=18%  Similarity=0.162  Sum_probs=245.0

Q ss_pred             hhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chh
Q 041252          148 QGRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SES  225 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~  225 (450)
                      .|.++.|+..|+.. +.+.+..|++.|.+++..++.....+.+.|+++.++.+|.+. +.++++.|+++|.|++.+ +++
T Consensus       118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~-~~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCC-ChhHHHHHHHHHHHHhhhhHHH
Confidence            46788999999764 567899999999999988888888999999999999999875 789999999999998875 578


Q ss_pred             hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252          226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL  305 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~  305 (450)
                      +..+.+.|+++.|+.++.+.+..++.+++++|.+|+...+.........++++.|+.++.+. +++++..++++|.+|+.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~-d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhhcc
Confidence            88999999999999999999999999999999999876554444445568899999999886 68889999999999995


Q ss_pred             -ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCh-hhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252          306 -LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLP-EGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL  383 (450)
Q Consensus       306 -~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  383 (450)
                       .++....+++.|+++.++.++.+++..++..|+.+|.+++... +....+.+ .|+++.|..++.+.++.+++.++++|
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~i~~~~~~~l  354 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIKKEACWTI  354 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHhcCCCHHHHHHHHHHH
Confidence             4556678889999999999999999999999999999999774 44555666 79999999999999999999999999


Q ss_pred             HHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252          384 WSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       384 ~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~  435 (450)
                      .+++..++ .....+++.|+++.++.++.++ +..++..|..+|..+.....
T Consensus       355 ~nl~~~~~-~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~  404 (503)
T d1wa5b_         355 SNITAGNT-EQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGL  404 (503)
T ss_dssp             HHHTTSCH-HHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhhccH-HHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhccc
Confidence            99998776 4456677899999999999988 68889999998888877644

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=1.5e-23  Score=159.76  Aligned_cols=75  Identities=48%  Similarity=0.853  Sum_probs=71.0

Q ss_pred             cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhccc
Q 041252           64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYL  138 (450)
Q Consensus        64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~~  138 (450)
                      .++|++|.||||+++|+|||+++|||+|||+||++|+..+...||.|+.++...++.||++|+++|++|+++|+.
T Consensus         3 peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~   77 (78)
T d1t1ha_           3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             CCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCc
Confidence            368999999999999999999999999999999999998778899999999999999999999999999999874

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.1e-20  Score=193.35  Aligned_cols=279  Identities=17%  Similarity=0.139  Sum_probs=237.9

Q ss_pred             hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh
Q 041252          148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT  227 (450)
Q Consensus       148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~  227 (450)
                      .|.++.++..|.+.+.+.+..|++.|.+++.+++.+|..+.+.|+++.|+.++.+. +..++..++++|.+++.+.....
T Consensus       161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~nl~~~~~~~~  239 (503)
T d1wa5b_         161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQP  239 (503)
T ss_dssp             TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccC-CHHHHHHHHHHHHHHhcCCccch
Confidence            46788899999998899999999999999998999999999999999999999875 67899999999999987654433


Q ss_pred             -hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252          228 -NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL  306 (450)
Q Consensus       228 -~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~  306 (450)
                       .....++++.++.++.+++.+++..++++|.+|+..++.....+...|+++.|+.++.++ ++.+...++.+|.+++.+
T Consensus       240 ~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~al~~l~nl~~~  318 (503)
T d1wa5b_         240 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTG  318 (503)
T ss_dssp             CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCC-chhhhhhHHHHHHHHHHH
Confidence             334578899999999999999999999999999876655555667789999999999886 678899999999999965


Q ss_pred             h-HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252          307 N-EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW  384 (450)
Q Consensus       307 ~-~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~  384 (450)
                      . .....+.+.|+++.|..++.+.++.++..++++|.|++.+ ++....+.+ .|+++.+++++.+.+..++..|+.+|.
T Consensus       319 ~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~-~~~l~~li~~l~~~~~~v~~~a~~~l~  397 (503)
T d1wa5b_         319 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID-ANLIPPLVKLLEVAEYKTKKEACWAIS  397 (503)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHH-ccccchhHHhcccCChhHHHHHHHHHH
Confidence            4 4556677899999999999999999999999999999865 667777777 899999999999999999999999999


Q ss_pred             HhcccCch--hHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252          385 SICKIAPE--ECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLC  430 (450)
Q Consensus       385 ~L~~~~~~--~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l  430 (450)
                      +++.....  +....+++.|+++.|+.++.+. ++.+...+...|..+
T Consensus       398 nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~-d~~~~~~~L~~l~~l  444 (503)
T d1wa5b_         398 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA-DNRIIEVTLDALENI  444 (503)
T ss_dssp             HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-CHHHHHHHHHHHHHH
T ss_pred             HHHhcccccHHHHHHHHHCCcHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence            99875532  3345677899999999999887 667777776655543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.5e-23  Score=159.29  Aligned_cols=74  Identities=26%  Similarity=0.393  Sum_probs=70.4

Q ss_pred             CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhccc
Q 041252           65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYL  138 (450)
Q Consensus        65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~~  138 (450)
                      ++|++|+||||+++|+|||+++|||||||+||.+|+..++.+||.|++++...++.||..|+++|++|+.+|+.
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~   76 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW   76 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCC
Confidence            68999999999999999999999999999999999998778899999999989999999999999999999873

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.2e-21  Score=155.27  Aligned_cols=73  Identities=30%  Similarity=0.397  Sum_probs=67.8

Q ss_pred             cCCCCeeeCcCCCCCCCCCeeCCCC-CcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252           64 AEIPSVFVCPISLEPMQDPVTLCTG-QTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY  137 (450)
Q Consensus        64 ~~~p~~~~Cpi~~~~m~dPv~~~~g-~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~  137 (450)
                      .++|++|+||||+++|+|||+++|| |||||+||.+|+.. +.+||.|++++...+++||++|+++|+.|+.++.
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~   90 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHH
Confidence            5799999999999999999999866 59999999999986 6789999999999999999999999999998864

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.6e-19  Score=168.28  Aligned_cols=193  Identities=16%  Similarity=0.146  Sum_probs=172.2

Q ss_pred             ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHH-HhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHH
Q 041252          205 SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD-MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRL  283 (450)
Q Consensus       205 ~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~l  283 (450)
                      +.+.+..|+.+|.+|+.+.+++..+...|+++.++. +|++++.++|..|+.+|.+++.+++.....+...|+++.|+++
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            567888999999999998899999999999999886 7788899999999999999998887777778888999999999


Q ss_pred             HhcCCCccchhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCCh
Q 041252          284 VKNKRHPNGILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS-LPEGKLALKDCANTI  361 (450)
Q Consensus       284 L~~~~~~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i  361 (450)
                      +.+..++.++..++++|.+++. ++.++..+.+.|+++.|+.+|.+.+..++..++.+|.+++. .++.+..+.+ .|++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~v  188 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMV  188 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHH-hhhH
Confidence            9876567889999999999995 56678888999999999999999999999999999999985 5889999988 8999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHH
Q 041252          362 PNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAV  399 (450)
Q Consensus       362 ~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~  399 (450)
                      +.|+++|.+.++.+++.|+.+|++|+..+++. ...+.
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~-~~~~~  225 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQG-VRECR  225 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH-HHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHH-HHHHH
Confidence            99999999999999999999999999888643 34444

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.5e-18  Score=161.34  Aligned_cols=194  Identities=16%  Similarity=0.174  Sum_probs=169.8

Q ss_pred             ccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHh-hhCCCCChhhHHHHHHHHHhcCCC-chhhhhccCCCchHH
Q 041252          160 KVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISS-LLGPFTSHAVGSEAVGVLVNLTLD-SESKTNLMQPAKVSL  237 (450)
Q Consensus       160 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~-lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k~~i~~~g~i~~  237 (450)
                      ..+.+.+..|+..|..++ ++.+|+..+...||+++++. +|.+. +.+++..|+.+|.+++.+ +..+..+.+.|+++.
T Consensus        28 ~~~~~~~~~Al~~L~~L~-~~~d~a~~l~~~gg~~~ll~~ll~s~-~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          28 AADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            345678889999999998 56778999999999999885 56554 789999999999999975 567778889999999


Q ss_pred             HHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHh
Q 041252          238 LVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVS  315 (450)
Q Consensus       238 Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~  315 (450)
                      |+.+|.+ .+++++..|+++|.+|+.+++.....+...|+++.|++++.++ +..++..++++|++++ .+++++..+++
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~  184 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCS  184 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC-chHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            9999975 5789999999999999988877777788889999999999986 6889999999999998 57889999999


Q ss_pred             cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhc
Q 041252          316 IGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKD  356 (450)
Q Consensus       316 ~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~  356 (450)
                      .|+++.|+.+|.++++++++.|+.+|.+|+.. ++.+..+..
T Consensus       185 ~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         185 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999999999999999999975 666666654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3e-17  Score=161.50  Aligned_cols=244  Identities=13%  Similarity=0.096  Sum_probs=193.0

Q ss_pred             CChHHHHhhhCCCCChhhHHHHHHHHHhcCC-CchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhh
Q 041252          191 GGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPE  269 (450)
Q Consensus       191 G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~  269 (450)
                      +.||.|+.+|++. +.+++..|+++|.||+. ++++|..+.+.|+|+.|+++|+++++++|..|+++|.+|+..++.++.
T Consensus         2 ~~ip~lv~~L~~~-~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3589999999886 79999999999999986 568999999999999999999999999999999999999977777777


Q ss_pred             HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhc---------------CCCChhHH
Q 041252          270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL---------------PSLDPDCL  334 (450)
Q Consensus       270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL---------------~~~~~~~~  334 (450)
                      .+...|+++.|+.++....++.++..++++|++++.....+......|..+.+..++               ...+..++
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            788889999999999876677789999999999998777776666655443333332               23467899


Q ss_pred             HHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhc--------------------------------------------
Q 041252          335 QLALCILDALSSLPEGKLALKDCANTIPNTVRLLMR--------------------------------------------  370 (450)
Q Consensus       335 ~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~--------------------------------------------  370 (450)
                      +.++.+|..++.+++++..+....|+++.+++++..                                            
T Consensus       161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  240 (457)
T d1xm9a1         161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence            999999999999988888877656778888776641                                            


Q ss_pred             -------------------------------------------------------CChHHHHHHHHHHHHhcccCchh--
Q 041252          371 -------------------------------------------------------VSEDCTQYALSILWSICKIAPEE--  393 (450)
Q Consensus       371 -------------------------------------------------------~s~~~~e~A~~~L~~L~~~~~~~--  393 (450)
                                                                             .++..++.+..++.+++......  
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  320 (457)
T d1xm9a1         241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchH
Confidence                                                                   01233455666666666544321  


Q ss_pred             --HHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252          394 --CSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD  436 (450)
Q Consensus       394 --~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~  436 (450)
                        .+..+.+.|+++.|+.+++++ ++.+++.|..+|..++.+..+
T Consensus       321 ~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~~~~  364 (457)
T d1xm9a1         321 GMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPLL  364 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSGGG
T ss_pred             HHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhChhH
Confidence              123334679999999999887 788999999999999876443

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.2e-15  Score=116.54  Aligned_cols=61  Identities=20%  Similarity=0.394  Sum_probs=53.0

Q ss_pred             eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCc-chHHHHHHH
Q 041252           69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT-PNKTLYHLI  129 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~-~n~~L~~~I  129 (450)
                      .+.||||.++|.|||+++|||+||+.||++|++.++.+||.|+.++...++. |.+++.+.+
T Consensus        23 ~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             CcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            3689999999999999999999999999999987677899999999876665 677766654

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=3.6e-16  Score=110.00  Aligned_cols=52  Identities=19%  Similarity=0.216  Sum_probs=47.0

Q ss_pred             eeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252           70 FVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN  122 (450)
Q Consensus        70 ~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n  122 (450)
                      ++||||+++|+|||++ .|||+|||+||.+|+.+ +.+||.||++++.++++|.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence            4799999999999987 59999999999999997 6789999999998888764

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-15  Score=121.59  Aligned_cols=66  Identities=20%  Similarity=0.439  Sum_probs=58.5

Q ss_pred             CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcC--CCCCCCcCCcCCCCCCcchHHHHHHHHHHH
Q 041252           68 SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG--RYTCPTTMQELWDDSVTPNKTLYHLIHTWF  133 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~  133 (450)
                      +.+.||||.++|.+||+++|||+||+.||.+|+...  ...||.|+.++...++.+|..+.++|+++.
T Consensus        20 ~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~   87 (103)
T d1jm7a_          20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL   87 (103)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred             cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHH
Confidence            457899999999999999999999999999999753  357999999999899999988888887774

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.1e-15  Score=118.02  Aligned_cols=65  Identities=15%  Similarity=0.332  Sum_probs=57.8

Q ss_pred             CeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHh
Q 041252           68 SVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQ  135 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~  135 (450)
                      +.+.||||.++|.|||++ +|||+||+.||.+|+..   .||.|+.++...++.+|..|..+|+.+...
T Consensus        21 ~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~   86 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLDSMIQLCSKL   86 (97)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred             hcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCcccHHHHHHHHHHHHH
Confidence            457899999999999976 79999999999999853   499999999889999999999999887543

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=98.69  Aligned_cols=50  Identities=20%  Similarity=0.230  Sum_probs=45.0

Q ss_pred             eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCC
Q 041252           69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDS  118 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~  118 (450)
                      ...||||.+.+.+|++++|||+||+.||.+|+..++.+||.||..+....
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            34799999999999999999999999999999876788999999987643

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.1e-12  Score=88.47  Aligned_cols=49  Identities=16%  Similarity=0.103  Sum_probs=42.0

Q ss_pred             eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcc
Q 041252           69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTP  121 (450)
Q Consensus        69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~  121 (450)
                      .+.||||++.+.||++++|||+||+.||++|    ..+||.||++++...-.|
T Consensus         6 ~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~   54 (56)
T d1bora_           6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP   54 (56)
T ss_dssp             CSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred             CCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCC
Confidence            3689999999999999999999999999865    567999999887654443

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.9e-11  Score=88.16  Aligned_cols=52  Identities=21%  Similarity=0.247  Sum_probs=42.1

Q ss_pred             CeeeCcCCCCCCCC-C----eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCC
Q 041252           68 SVFVCPISLEPMQD-P----VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV  119 (450)
Q Consensus        68 ~~~~Cpi~~~~m~d-P----v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l  119 (450)
                      ++..||||++.+.. |    ++.+|||+|++.||.+|+..++..||.||+++...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            35679999986532 2    5678999999999999998777789999998865543

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.02  E-value=7.6e-11  Score=85.79  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=39.6

Q ss_pred             eCcCCCCCCCCCee-CCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           71 VCPISLEPMQDPVT-LCTGQTYERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        71 ~Cpi~~~~m~dPv~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      .||||.+.|.+|++ ++|||+|+..||.+|++. +.+||.||.++.
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~   51 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence            39999999999865 799999999999999997 678999998875

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.8e-10  Score=77.22  Aligned_cols=46  Identities=17%  Similarity=0.233  Sum_probs=39.0

Q ss_pred             eCcCCCCCCCC----CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           71 VCPISLEPMQD----PVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        71 ~Cpi~~~~m~d----Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      -||||.+.|.+    +.+++|||+|++.||.+|++.++.+||.||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            49999998864    34568999999999999998767789999998864

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.82  E-value=1.1e-09  Score=75.72  Aligned_cols=47  Identities=19%  Similarity=0.405  Sum_probs=39.2

Q ss_pred             CCeeeCcCCCCCCCCC---eeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252           67 PSVFVCPISLEPMQDP---VTL-CTGQTYERSNILKWFSLGRYTCPTTMQEL  114 (450)
Q Consensus        67 p~~~~Cpi~~~~m~dP---v~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l  114 (450)
                      .+...||||.+.|.+.   +.+ +|||.|+..||.+|++. +.+||.||.++
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence            4556799999999853   344 69999999999999987 77899999865

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=1.2e-08  Score=81.82  Aligned_cols=56  Identities=13%  Similarity=0.210  Sum_probs=44.0

Q ss_pred             hhccCCCCeeeCcCCCCCCCCC------------------eeCCCCCcccHHHHHHHHhc----CCCCCCCcCCcCCC
Q 041252           61 LDLAEIPSVFVCPISLEPMQDP------------------VTLCTGQTYERSNILKWFSL----GRYTCPTTMQELWD  116 (450)
Q Consensus        61 ~~~~~~p~~~~Cpi~~~~m~dP------------------v~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~~  116 (450)
                      ++....+.+..||||++.|.++                  .+++|||.|+..||.+|+..    ++.+||.||..+..
T Consensus        17 ~e~~~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          17 TEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             EEECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             HHHhcccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            3345566677899999988754                  35789999999999999985    34579999987643

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=2e-06  Score=78.12  Aligned_cols=231  Identities=13%  Similarity=0.085  Sum_probs=145.2

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      ..+.|+..|++.++.+|..|+..|..+..           ..+++.|+.++.+. +..++..|+.+|..+......... 
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~-~~~vr~~a~~aL~~l~~~~~~~~~-   86 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKKCEDN-   86 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTTTHHH-
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccccccc-
Confidence            46679999999999999999999976631           12479999999876 789999999999887654333222 


Q ss_pred             cCCCchHHHHH-HhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252          230 MQPAKVSLLVD-MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE  308 (450)
Q Consensus       230 ~~~g~i~~Lv~-lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~  308 (450)
                          .++.+.. ++++.++.++..|+.+|..+......     .....++.+...+.+. ++.++..++.++..+.    
T Consensus        87 ----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~-----~~~~~~~~l~~~~~d~-~~~vr~~a~~~l~~~~----  152 (276)
T d1oyza_          87 ----VFNILNNMALNDKSACVRATAIESTAQRCKKNPI-----YSPKIVEQSQITAFDK-STNVRRATAFAISVIN----  152 (276)
T ss_dssp             ----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC-----
T ss_pred             ----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccch-----hhHHHHHHHHHHhcCc-chHHHHHHHHHHhhcc----
Confidence                1333333 45677999999999999998654422     2234556666666664 4666666666655442    


Q ss_pred             HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCh-hh---------------HH-------HHhccCCChHHHH
Q 041252          309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLP-EG---------------KL-------ALKDCANTIPNTV  365 (450)
Q Consensus       309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-e~---------------r~-------~i~~~~g~i~~Lv  365 (450)
                            ....++.++.++...+..+...+..++..+.... ..               +.       .+.. ..+++.|+
T Consensus       153 ------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~L~  225 (276)
T d1oyza_         153 ------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-KRVLSVLC  225 (276)
T ss_dssp             --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-GGGHHHHH
T ss_pred             ------hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhh-hhhHHHHH
Confidence                  1233444444444444444444444443332211 00               00       0111 35678888


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041252          366 RLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK  428 (450)
Q Consensus       366 ~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~  428 (450)
                      +.+.+  +.++..|+.+|..+..            .++++.|..++..+.+..++..|...|+
T Consensus       226 ~~l~d--~~vr~~a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         226 DELKK--NTVYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHTS--SSCCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHhCC--hHHHHHHHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            87764  4466677777766531            3577888888877656778888877664

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=7.2e-06  Score=83.04  Aligned_cols=261  Identities=11%  Similarity=0.100  Sum_probs=174.4

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC--chhhh
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD--SESKT  227 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~--~~~k~  227 (450)
                      .++.+...+...+..+|..|+..|..++.....  .. .+.-.+|.+..+..+. ....+..|+.++..+...  +..+.
T Consensus        88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~--~~-~~~~l~p~i~~L~~~~-~~~~r~~a~~ll~~~~~~~~~~~~~  163 (588)
T d1b3ua_          88 LLPPLESLATVEETVVRDKAVESLRAISHEHSP--SD-LEAHFVPLVKRLAGGD-WFTSRTSACGLFSVCYPRVSSAVKA  163 (588)
T ss_dssp             GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HH-HHHTHHHHHHHHHTCS-SHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCH--HH-HHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHhhHHHHH
Confidence            344455556666778999999999998764321  11 2333456566666553 455666676666665432  23333


Q ss_pred             hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc--
Q 041252          228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL--  305 (450)
Q Consensus       228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~--  305 (450)
                      .     .++.+..++.+.++.+|..|+..+..++..-..  .. ....+++.+..+++++ ++.++..++.+|..++.  
T Consensus       164 ~-----l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~--~~-~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~i~~~~  234 (588)
T d1b3ua_         164 E-----LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DN-VKSEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLL  234 (588)
T ss_dssp             H-----HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HH-HHHTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHS
T ss_pred             H-----HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH--HH-HHHHHHHHHHHHhcCC-chhhHHHHHHHHHHhhccC
Confidence            3     367788888889999999999999999764321  11 1234567777777775 67889999999998873  


Q ss_pred             ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 041252          306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWS  385 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  385 (450)
                      ..+...    .-.++.+..++.+.+..++..++.+|..++..-. ... .. ...++.+..++...+..++..|+..|..
T Consensus       235 ~~~~~~----~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~-~~~-~~-~~l~~~l~~ll~d~~~~vr~~a~~~l~~  307 (588)
T d1b3ua_         235 PQEDLE----ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG-PEI-TK-TDLVPAFQNLMKDCEAEVRAAASHKVKE  307 (588)
T ss_dssp             CHHHHH----HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC-HHH-HH-HTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             CHHHHH----HHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh-hhh-hh-hhhhHHHHHHHhccchHHHHHHHHHHHH
Confidence            222222    2357888889988899999999999999875321 112 22 2568899999998899999999999998


Q ss_pred             hcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252          386 ICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       386 L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls  431 (450)
                      ++..-.........-...++.+..++.+. ++.+|..++..+..+.
T Consensus       308 ~~~~l~~~~~~~~~~~~i~~~l~~~~~d~-~~~vr~~~~~~l~~~~  352 (588)
T d1b3ua_         308 FCENLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLS  352 (588)
T ss_dssp             HHHTSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGH
T ss_pred             HHHHHhhhhhhhhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHhhhh
Confidence            87654322222222345667777776665 6777777666555443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.1e-05  Score=79.44  Aligned_cols=175  Identities=14%  Similarity=0.102  Sum_probs=97.7

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHc--HHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC---chh
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAH--ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD---SES  225 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~--~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~---~~~  225 (450)
                      +..|+..|++.+..+|..|++.|..++..-  +..+.     ..+|.|..++..  +++++..++..|.++...   ++.
T Consensus        12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~-----~lip~l~~~~~~--~~ev~~~~~~~l~~~~~~~~~~~~   84 (588)
T d1b3ua_          12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRS-----ELLPFLTDTIYD--EDEVLLALAEQLGTFTTLVGGPEY   84 (588)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHH-----THHHHHHHTCCC--CHHHHHHHHHHHTTCSGGGTSGGG
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHH-----HHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHcCChhH
Confidence            556788889988999999999999887642  22222     347888888764  346666666666665431   121


Q ss_pred             hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252          226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL  305 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~  305 (450)
                      .     ...++.+..++..++..+|..|+.+|..++..-+. ..+  ..-+++.+.++..+. ....+..++..+..+..
T Consensus        85 ~-----~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~-~~~--~~~l~p~i~~L~~~~-~~~~r~~a~~ll~~~~~  155 (588)
T d1b3ua_          85 V-----HCLLPPLESLATVEETVVRDKAVESLRAISHEHSP-SDL--EAHFVPLVKRLAGGD-WFTSRTSACGLFSVCYP  155 (588)
T ss_dssp             G-----GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH-HHH--HHTHHHHHHHHHTCS-SHHHHHHHGGGHHHHTT
T ss_pred             H-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCH-HHH--HHHHHHHHHHHhccc-chHHHHHHHHHHHHHHH
Confidence            1     23356666777777888999999888888643221 111  111223333333322 22233344444444431


Q ss_pred             --ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252          306 --LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS  346 (450)
Q Consensus       306 --~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~  346 (450)
                        .+..+..+     ++.+..++.+.++.++..++.++..++.
T Consensus       156 ~~~~~~~~~l-----~~~~~~l~~D~~~~VR~~a~~~l~~~~~  193 (588)
T d1b3ua_         156 RVSSAVKAEL-----RQYFRNLCSDDTPMVRRAAASKLGEFAK  193 (588)
T ss_dssp             TSCHHHHHHH-----HHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHH-----HHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence              22222222     3445555555555555555555555543

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.40  E-value=1e-07  Score=66.91  Aligned_cols=48  Identities=19%  Similarity=0.227  Sum_probs=40.8

Q ss_pred             CeeeCcCCCCCCCCCeeCCC-----CCcccHHHHHHHHhc-CCCCCCCcCCcCC
Q 041252           68 SVFVCPISLEPMQDPVTLCT-----GQTYERSNILKWFSL-GRYTCPTTMQELW  115 (450)
Q Consensus        68 ~~~~Cpi~~~~m~dPv~~~~-----g~ty~r~~I~~~~~~-~~~~cP~~~~~l~  115 (450)
                      +...|+||.+-+.+|.+.+|     +|.|.+.||.+|+.. ++.+||.|+.++.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            45679999999999987765     499999999999974 5778999998875

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1e-07  Score=72.44  Aligned_cols=43  Identities=21%  Similarity=0.392  Sum_probs=35.6

Q ss_pred             CcCCCCCCCC------------------CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252           72 CPISLEPMQD------------------PVTLCTGQTYERSNILKWFSLGRYTCPTTMQELW  115 (450)
Q Consensus        72 Cpi~~~~m~d------------------Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~  115 (450)
                      |+||++.|.+                  +++++|||.|...||.+|++. +.+||.||+++.
T Consensus        24 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             CSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            7888777765                  234689999999999999997 678999998764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=0.0002  Score=64.20  Aligned_cols=206  Identities=13%  Similarity=0.022  Sum_probs=133.1

Q ss_pred             CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhH
Q 041252          191 GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEI  270 (450)
Q Consensus       191 G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~  270 (450)
                      ...+.|+.+|.+. +..++..|+.+|..+..          ..+++.|+.+++++++.+|..|+.+|..+......    
T Consensus        19 ~~~~~L~~~L~d~-~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~----   83 (276)
T d1oyza_          19 LNDDELFRLLDDH-NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC----   83 (276)
T ss_dssp             SCHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT----
T ss_pred             CCHHHHHHHhcCC-CHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc----
Confidence            3467788999875 78999999999976532          35689999999999999999999999988543322    


Q ss_pred             hhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhh
Q 041252          271 VSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEG  350 (450)
Q Consensus       271 ~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~  350 (450)
                        ....++.|...+-+..++.++..++.+|.+++......    ....++.+...+.+.+..++..++.++.....    
T Consensus        84 --~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~----  153 (276)
T d1oyza_          84 --EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND----  153 (276)
T ss_dssp             --HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred             --ccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcch----
Confidence              12234455554443347889999999999987433211    12346778888888888888888877765432    


Q ss_pred             HHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCch--------------hHHHHH-------HhcChHHHHHH
Q 041252          351 KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPE--------------ECSSAA-------VDAGLAAKLFL  409 (450)
Q Consensus       351 r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~--------------~~~~~~-------~~~G~i~~L~~  409 (450)
                             ...++.+..++...+..+...+..++..+......              ..+..+       ....+++.|+.
T Consensus       154 -------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~  226 (276)
T d1oyza_         154 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCD  226 (276)
T ss_dssp             --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             -------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHH
Confidence                   34566666666665555555555544443322210              000000       11346788888


Q ss_pred             HHHcCCCHHHHHHHHHHHHHHH
Q 041252          410 VIQSGCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       410 ll~s~~~~~~k~~A~~lL~~ls  431 (450)
                      .++++   .+|..|...|..+.
T Consensus       227 ~l~d~---~vr~~a~~aL~~ig  245 (276)
T d1oyza_         227 ELKKN---TVYDDIIEAAGELG  245 (276)
T ss_dssp             HHTSS---SCCHHHHHHHHHHC
T ss_pred             HhCCh---HHHHHHHHHHHHcC
Confidence            77654   35677777776654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.69  E-value=1.3e-05  Score=62.87  Aligned_cols=89  Identities=12%  Similarity=0.068  Sum_probs=72.9

Q ss_pred             CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHH
Q 041252          232 PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS  311 (450)
Q Consensus       232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~  311 (450)
                      ..+++.|+..|.++++.+|..|+.+|.++.           ..+.++.|+.+|+++ ++.++..++.+|..+..      
T Consensus        21 ~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~d~-~~~VR~~a~~aL~~i~~------   82 (111)
T d1te4a_          21 DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG------   82 (111)
T ss_dssp             STTHHHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS------
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc-----------hhhhHHHHHhhhccc-hhHHHHHHHHHHHHhCc------
Confidence            346889999999999999999999886552           234678899999987 78899999999987743      


Q ss_pred             HHHhcCCHHHHHHhcCCCChhHHHHHHHHHH
Q 041252          312 LVVSIGAVPQLVELLPSLDPDCLQLALCILD  342 (450)
Q Consensus       312 ~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~  342 (450)
                          .++++.|..++.+.++.++..|+.+|.
T Consensus        83 ----~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 ----ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             ----HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ----cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                235788889999999999999998874

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=3.3e-05  Score=84.61  Aligned_cols=275  Identities=12%  Similarity=0.041  Sum_probs=169.8

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      .+..|++.+.+.+.+.|..|+..|.+....+...-..-.....++.|+.+|... +.+|+..|+.+|..+...-....  
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~-~~~Vq~~A~k~l~~l~~~~~~~~--   80 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKEYQ--   80 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCHHH--
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCcHhh--
Confidence            356788889999999999999988876532110000000112478899999875 78999999999988754321111  


Q ss_pred             cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-C--hhhH--hhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD-F--RPEI--VSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~-~--~~~~--~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                       -...++.|+..+.+++...+..+..+|..+...-. .  ...+  .....+++.|...+....+..++..++.+|..+.
T Consensus        81 -~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~  159 (1207)
T d1u6gc_          81 -VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  159 (1207)
T ss_dssp             -HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence             02346777777777788888888888877642110 0  0001  1122344555555544445566777888877775


Q ss_pred             cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHH
Q 041252          305 LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSIL  383 (450)
Q Consensus       305 ~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L  383 (450)
                      ..-..-..-.....++.|+..+.+.+..++..|+.+|..|+..-..  ...  ...++.+++.+... +...+..++.+|
T Consensus       160 ~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~~--~~~~~~ll~~l~~~~~~~~~~~~~~~l  235 (1207)
T d1u6gc_         160 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRTYIQCI  235 (1207)
T ss_dssp             HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred             HHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HHH--HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            2111000000122567788888888999999999999999865211  122  24577777776543 445566677777


Q ss_pred             HHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252          384 WSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT  435 (450)
Q Consensus       384 ~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~  435 (450)
                      ..++...+.....  .-..+++.++..+++. ++..|+.+...+..+.....
T Consensus       236 ~~l~~~~~~~~~~--~l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~  284 (1207)
T d1u6gc_         236 AAISRQAGHRIGE--YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCP  284 (1207)
T ss_dssp             HHHHHHSSGGGTT--SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcchhhHH--HHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhCh
Confidence            7777765432111  1146788888888876 67788888888877765543

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.5e-05  Score=60.87  Aligned_cols=44  Identities=14%  Similarity=0.246  Sum_probs=33.7

Q ss_pred             eeCcCCCCCCC--C-CeeCCCCCcccHHHHHHHHhc----CC---CCCCCcCCc
Q 041252           70 FVCPISLEPMQ--D-PVTLCTGQTYERSNILKWFSL----GR---YTCPTTMQE  113 (450)
Q Consensus        70 ~~Cpi~~~~m~--d-Pv~~~~g~ty~r~~I~~~~~~----~~---~~cP~~~~~  113 (450)
                      ..||||.+.+.  + |.+..|||.||+.||.+|+..    +.   ..||.|+.+
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            46999998885  3 556689999999999999863    22   259987643

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.0014  Score=62.28  Aligned_cols=278  Identities=11%  Similarity=0.027  Sum_probs=164.1

Q ss_pred             hcHHHHHHHhhcc--chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCC-CChhhHHHHHHHHHhcCCCchh
Q 041252          149 GRASELLGTLKKV--KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPF-TSHAVGSEAVGVLVNLTLDSES  225 (450)
Q Consensus       149 ~~i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~-~~~~v~~~Al~~L~~Ls~~~~~  225 (450)
                      ..++.++..+.+.  ....+..++..+..++.........-.-...++.++..+.+. .+..++..|+.++..+......
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            4567777777653  345667788888777654321111111122356677777643 2467888999999886653321


Q ss_pred             h-h-hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh-hhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHH
Q 041252          226 K-T-NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR-PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRS  302 (450)
Q Consensus       226 k-~-~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~-~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~  302 (450)
                      . . ........+.+...+.+++++++..+..+|..++...... ...+ .......+.....+. +..++..+...+..
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~  284 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSD-IDEVALQGIEFWSN  284 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCS-SHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence            1 1 1122335666777778889999999999999987543211 1111 111223334444443 56677778877777


Q ss_pred             hccChHHHH---------------------HHHhcCCHHHHHHhcCC-------CChhHHHHHHHHHHHhcCChhhHHHH
Q 041252          303 ICLLNEVRS---------------------LVVSIGAVPQLVELLPS-------LDPDCLQLALCILDALSSLPEGKLAL  354 (450)
Q Consensus       303 Ls~~~~~~~---------------------~iv~~G~v~~Lv~lL~~-------~~~~~~~~al~~L~~L~~~~e~r~~i  354 (450)
                      ++.......                     ...-...++.+.+.+..       .+..++..|..++..++.....  .+
T Consensus       285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~  362 (458)
T d1ibrb_         285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI  362 (458)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH
T ss_pred             HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hh
Confidence            763321110                     00111234455555532       2235677788888877643211  11


Q ss_pred             hccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252          355 KDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNY  434 (450)
Q Consensus       355 ~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~  434 (450)
                      ..  ..++.+.+.+.+.+...++.|+.+|..++.....+.... .-..+++.|+..+++. ++.+|..|...|..+....
T Consensus       363 ~~--~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~~~  438 (458)
T d1ibrb_         363 VP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELL  438 (458)
T ss_dssp             HH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHG
T ss_pred             hh--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence            21  245566677777778899999999999986542221111 1245788889988876 8999999999998877653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=0.0017  Score=67.05  Aligned_cols=262  Identities=11%  Similarity=-0.017  Sum_probs=156.8

Q ss_pred             HHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC-ChhhHHHHHHHHHhcCC-Cchh-hhh----
Q 041252          156 GTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT-SHAVGSEAVGVLVNLTL-DSES-KTN----  228 (450)
Q Consensus       156 ~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~-~~~~-k~~----  228 (450)
                      ..+.+++.+.|..|-+.|..+..++.        .+.+..|..++.+.+ +..++..|+-.|.|.-. .... ...    
T Consensus        12 ~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~   83 (861)
T d2bpta1          12 NSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR   83 (861)
T ss_dssp             HHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhh
Confidence            44567788899999999988875432        124567778776532 45677778888887432 2111 000    


Q ss_pred             ---ccC----CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHH
Q 041252          229 ---LMQ----PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLR  301 (450)
Q Consensus       229 ---i~~----~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~  301 (450)
                         ...    ...-..++..|.+.+..+|..++.++..++...-....   =..+++.|+..+.+..+...+..++.+|.
T Consensus        84 ~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~---wpeli~~L~~~~~s~~~~~~~~~al~~l~  160 (861)
T d2bpta1          84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA---WPELMKIMVDNTGAEQPENVKRASLLALG  160 (861)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC---CHHHHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred             hHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc---hHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence               011    12245667778888999999999999988643211000   13467888888776544456677888888


Q ss_pred             HhccChHHH-HHHHh--cCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCC-hhhH--HHHhccCCChHHHHHHHhcCCh
Q 041252          302 SICLLNEVR-SLVVS--IGAVPQLVELL--PSLDPDCLQLALCILDALSSL-PEGK--LALKDCANTIPNTVRLLMRVSE  373 (450)
Q Consensus       302 ~Ls~~~~~~-~~iv~--~G~v~~Lv~lL--~~~~~~~~~~al~~L~~L~~~-~e~r--~~i~~~~g~i~~Lv~lL~~~s~  373 (450)
                      .++..-... ..+..  ...+..++..+  ...+..++..|+.+|.++... +.+-  ....  ...++.+.+.+...++
T Consensus       161 ~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~  238 (861)
T d2bpta1         161 YMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGER--NYLMQVVCEATQAEDI  238 (861)
T ss_dssp             HHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHH--HHHHHHHHHHHTCSCH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhh--hHHHHhHHHHhcCCCH
Confidence            887321110 00010  11233344433  334678999999999988754 2211  1111  2356677788888889


Q ss_pred             HHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252          374 DCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL  432 (450)
Q Consensus       374 ~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~  432 (450)
                      .++..+..+|..++...++..... ... .+..+........++.++..+..++..+..
T Consensus       239 ~~~~~~~~~l~~i~~~~~~~~~~~-l~~-~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         239 EVQAAAFGCLCKIMSKYYTFMKPY-MEQ-ALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCHHH-HHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            999999999999887665432221 111 233333333333367888888777665543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=0.0011  Score=64.42  Aligned_cols=229  Identities=17%  Similarity=0.182  Sum_probs=146.2

Q ss_pred             CChhhHHHHHHHHHhcCCCchhhhhccC--CCchHHHHHHhcC-----------------CCHHHHHHHHHHHHHHhccC
Q 041252          204 TSHAVGSEAVGVLVNLTLDSESKTNLMQ--PAKVSLLVDMLNE-----------------GSVETKINCTRLIEKLMEEK  264 (450)
Q Consensus       204 ~~~~v~~~Al~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~-----------------~~~~~~~~aa~~L~~La~~~  264 (450)
                      .+...+.-++..|..+...++.|..+.+  ...++.++++|+.                 ...+.+-++.-+++-|+-..
T Consensus       177 ~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~  256 (477)
T d1ho8a_         177 EQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP  256 (477)
T ss_dssp             TCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH
T ss_pred             cccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCH
Confidence            3566777788888888888888887754  4467777777742                 12477888999999997654


Q ss_pred             CChhhHhhh-hhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh--H----HHHHHHhcCCHHHHHHhcCC---CChhHH
Q 041252          265 DFRPEIVSS-HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN--E----VRSLVVSIGAVPQLVELLPS---LDPDCL  334 (450)
Q Consensus       265 ~~~~~~~~~-~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~--~----~~~~iv~~G~v~~Lv~lL~~---~~~~~~  334 (450)
                      +........ .+.++.|+.+++...-..+.+-++.+|+|+....  .    ....++..++++. +..|..   .|+++.
T Consensus       257 ~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~  335 (477)
T d1ho8a_         257 VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELR  335 (477)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHH
Confidence            443333222 3568899999987545678889999999998431  1    2334556666655 555532   366665


Q ss_pred             HHHHHHHH-------HhcCChhhHHHH------------------------hc-cCCChHHHHHHHhc----------CC
Q 041252          335 QLALCILD-------ALSSLPEGKLAL------------------------KD-CANTIPNTVRLLMR----------VS  372 (450)
Q Consensus       335 ~~al~~L~-------~L~~~~e~r~~i------------------------~~-~~g~i~~Lv~lL~~----------~s  372 (450)
                      +.--..-.       .+++-++...++                        .+ +-..+..|+++|..          .+
T Consensus       336 edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D  415 (477)
T d1ho8a_         336 QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE  415 (477)
T ss_dssp             HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCC
Confidence            44332222       233223333322                        11 11247888899863          13


Q ss_pred             hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH-HHhhcC
Q 041252          373 EDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL-CSLNYT  435 (450)
Q Consensus       373 ~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~-ls~~~~  435 (450)
                      +.+..-|+.=|..++++-|.. +..+-+-|+=..++.+|.+. ++.+|..|...+.. +..||+
T Consensus       416 ~~~lAVAc~DiGefvr~~P~g-r~il~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~~nw~  477 (477)
T d1ho8a_         416 KIIIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIGYTFK  477 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHHHSCC
T ss_pred             cceeehhhhhHHHHHHHCcch-hHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCC
Confidence            445556666677888888743 44445679888889999887 89999999876654 555553

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=0.0012  Score=63.99  Aligned_cols=232  Identities=15%  Similarity=0.128  Sum_probs=152.8

Q ss_pred             HHHHhh-ccchHHHHHHHHHHHHHHHHcHHHHHHHHh--hCChHHHHhhhCC----------------CCChhhHHHHHH
Q 041252          154 LLGTLK-KVKGQARVQALKELHQIAAAHASARKTMVD--EGGVALISSLLGP----------------FTSHAVGSEAVG  214 (450)
Q Consensus       154 Lv~~L~-~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~~----------------~~~~~v~~~Al~  214 (450)
                      ++..|. ..+.+.+.-++..|..+.. .++.|..+..  ...++.|+.+|+.                ...-..+.+++-
T Consensus       169 ~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll  247 (477)
T d1ho8a_         169 LINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL  247 (477)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred             HHHHhhcccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHH
Confidence            334443 3445566667888877764 4568887754  3346666666632                112356788999


Q ss_pred             HHHhcCCCchhhhhccCC--CchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCh-----hhHhhhhhHHHHHHHHHhc
Q 041252          215 VLVNLTLDSESKTNLMQP--AKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFR-----PEIVSSHRLLIGLMRLVKN  286 (450)
Q Consensus       215 ~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~-----~~~~~~~g~l~~Lv~lL~~  286 (450)
                      +++.|+.+++....+.+.  +.|+.++.+++. .-..+..-+..+|+|+.+.....     ...+...+++ .++..|..
T Consensus       248 ~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~  326 (477)
T d1ho8a_         248 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSE  326 (477)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHS
T ss_pred             HHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhc
Confidence            999999988887777765  459999999874 46777888889999997543221     1222333444 44555554


Q ss_pred             C-C-CccchhHHHHHH--------HHhccChHHHHHHHh--------------------------cCCHHHHHHhcC---
Q 041252          287 K-R-HPNGILPGLSLL--------RSICLLNEVRSLVVS--------------------------IGAVPQLVELLP---  327 (450)
Q Consensus       287 ~-~-~~~~~~~al~aL--------~~Ls~~~~~~~~iv~--------------------------~G~v~~Lv~lL~---  327 (450)
                      . . +++.. .-+..|        ..+++.++.+..+-+                          ...+..|+++|.   
T Consensus       327 r~~~Dedl~-edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~  405 (477)
T d1ho8a_         327 RKYSDEELR-QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV  405 (477)
T ss_dssp             SCCSSHHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHH-HHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcc
Confidence            3 2 33322 222222        334545555444322                          126778999985   


Q ss_pred             -------CCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 041252          328 -------SLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKI  389 (450)
Q Consensus       328 -------~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~  389 (450)
                             +.++.+..-|+.=|..++.+ |++|..+.+ -|+=..++++|.+.+++++.+|+.++-.+..+
T Consensus       406 ~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~-lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         406 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCcceeehhhhhHHHHHHHCcchhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence                   23677788888889999865 999999987 68888899999989999999999998766543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.40  E-value=3.4e-05  Score=60.36  Aligned_cols=105  Identities=16%  Similarity=0.059  Sum_probs=82.1

Q ss_pred             CccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHH
Q 041252          289 HPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLL  368 (450)
Q Consensus       289 ~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL  368 (450)
                      ++.++..|+.+|..+.           ..+++.|+..|.+.++.++..|+.+|..+..           ...++.|+++|
T Consensus         5 ~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l   62 (111)
T d1te4a_           5 NKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLL   62 (111)
T ss_dssp             CCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhh
Confidence            5677878777776653           1367889999999999999999999976642           34688999999


Q ss_pred             hcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041252          369 MRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK  428 (450)
Q Consensus       369 ~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~  428 (450)
                      .+.++.++..|+.+|..+..            .+.++.|..+++++ ++.+|+.|...|.
T Consensus        63 ~d~~~~VR~~a~~aL~~i~~------------~~~~~~L~~ll~d~-~~~vr~~A~~aL~  109 (111)
T d1te4a_          63 EDDSGFVRSGAARSLEQIGG------------ERVRAAMEKLAETG-TGFARKVAVNYLE  109 (111)
T ss_dssp             HHCCTHHHHHHHHHHHHHCS------------HHHHHHHHHHTTSC-CTHHHHHHHHHGG
T ss_pred             ccchhHHHHHHHHHHHHhCc------------cchHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            99999999999999977632            13467777888776 7889998887764

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0025  Score=67.22  Aligned_cols=274  Identities=15%  Similarity=0.099  Sum_probs=154.8

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHcHH-HHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252          151 ASELLGTLKKVKGQARVQALKELHQIAAAHAS-ARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL  229 (450)
Q Consensus       151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~-~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i  229 (450)
                      ++.++..+++.++.+|..|+++|..++..... .... .-...++.++..+.+. +..+++.|+.+|.++....  ...+
T Consensus       438 i~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l~d~-~~~V~~~a~~al~~l~~~~--~~~l  513 (888)
T d1qbkb_         438 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEA--CTEL  513 (888)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHHSSS-CHHHHHHHHHHHHHHHHHH--TTSS
T ss_pred             hHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh--hhhh
Confidence            45567777778888999999999888753211 1111 1234567777777664 6789999999999876321  1122


Q ss_pred             cC--CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC--CC-hhhHhhhhhHHHHHHHHHhcC-CCccchhHHHHHHHHh
Q 041252          230 MQ--PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK--DF-RPEIVSSHRLLIGLMRLVKNK-RHPNGILPGLSLLRSI  303 (450)
Q Consensus       230 ~~--~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~--~~-~~~~~~~~g~l~~Lv~lL~~~-~~~~~~~~al~aL~~L  303 (450)
                      ..  ...++.++..+...+...+..+..++..++..-  .. ....  -..+++.+......- .+.......+.+|..+
T Consensus       514 ~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i  591 (888)
T d1qbkb_         514 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEY--IQMLMPPLIQKWNMLKDEDKDLFPLLECLSSV  591 (888)
T ss_dssp             GGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHH--HHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHH--HHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            21  345677777777777777777777777775321  11 1111  122445555544431 1223344455555555


Q ss_pred             cc--Ch---HHHHHHHh--cCCHH-----HHHHhc-----CCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHH
Q 041252          304 CL--LN---EVRSLVVS--IGAVP-----QLVELL-----PSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTV  365 (450)
Q Consensus       304 s~--~~---~~~~~iv~--~G~v~-----~Lv~lL-----~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv  365 (450)
                      +.  ..   .....+.+  .+.+.     .+....     ...+.+....++.++..+... .+.-..+......++.+.
T Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~  671 (888)
T d1qbkb_         592 ATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMY  671 (888)
T ss_dssp             HHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHH
T ss_pred             HHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHH
Confidence            41  11   11111111  01111     111111     123456777777777777643 222233333256778888


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          366 RLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       366 ~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      ..+...+..+++.|..++..++.......... + ...++.|..-+.+. ...++.+|...+.-+..+
T Consensus       672 ~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~-l-~~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~  736 (888)
T d1qbkb_         672 QCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-I-ADFMPILGTNLNPE-FISVCNNATWAIGEISIQ  736 (888)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-H-HHHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHhhhHHHHHH-H-HHHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHH
Confidence            88888889999999999988887665432111 1 12455555555554 567788888887776655

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.014  Score=55.08  Aligned_cols=251  Identities=13%  Similarity=0.117  Sum_probs=148.7

Q ss_pred             HHHHHHHhhc--cchHHHHHHHHHHHHHHHHcHHHHH-HHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhh
Q 041252          151 ASELLGTLKK--VKGQARVQALKELHQIAAAHASARK-TMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESK  226 (450)
Q Consensus       151 i~~Lv~~L~~--~~~~~~~~Al~~L~~l~~~~~~~r~-~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k  226 (450)
                      +..++..+.+  .+.+++..|++.+..+.......-. ........+.+..++... +.+++..++.+|..+.... +.-
T Consensus       173 l~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~  251 (458)
T d1ibrb_         173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYM  251 (458)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCC-CHHHHHHHHHHHHHHHHHhHHHH
Confidence            4556666654  3456888899988877643221111 111112345566666654 7788888888888865321 111


Q ss_pred             hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----------------ChhhHh---hhhhHHHHHHHHHhc
Q 041252          227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD-----------------FRPEIV---SSHRLLIGLMRLVKN  286 (450)
Q Consensus       227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~-----------------~~~~~~---~~~g~l~~Lv~lL~~  286 (450)
                      ...+.......+...+.+.+.+++..|...+..++....                 ......   .-...++.+...+..
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  331 (458)
T d1ibrb_         252 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  331 (458)
T ss_dssp             TTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhc
Confidence            112223344455566677888999999888887752210                 000000   111234444444432


Q ss_pred             ------CCCccchhHHHHHHHHhccC--hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCh--hhHHHHhc
Q 041252          287 ------KRHPNGILPGLSLLRSICLL--NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLP--EGKLALKD  356 (450)
Q Consensus       287 ------~~~~~~~~~al~aL~~Ls~~--~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~--e~r~~i~~  356 (450)
                            ..+..++..+..++..++..  ++...     ..++.+.+.+.+.+...++.|+.+|..++...  +....+. 
T Consensus       332 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-----~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l-  405 (458)
T d1ibrb_         332 QDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-  405 (458)
T ss_dssp             CCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-
T ss_pred             chhhhccccccHHHHHHHHHHHHHHhccHhhhh-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-
Confidence                  11233566777888877732  22211     24567778888889999999999999998642  2222333 


Q ss_pred             cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc
Q 041252          357 CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS  413 (450)
Q Consensus       357 ~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s  413 (450)
                       ...++.++..+.+.++.++..|+.+|..++..-++..    ...-.++.++..+-.
T Consensus       406 -~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~----~~~~~l~~ll~~ll~  457 (458)
T d1ibrb_         406 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA----INDVYLAPLLQCLIE  457 (458)
T ss_dssp             -TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGC----CSTTTHHHHHHHHHC
T ss_pred             -HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccc----chhhHHHHHHHHHhC
Confidence             3578999999998899999999999998876543221    112235666655543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.0018  Score=70.31  Aligned_cols=273  Identities=10%  Similarity=0.030  Sum_probs=156.3

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHH-H----HHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASAR-K----TMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE  224 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r-~----~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~  224 (450)
                      .++.|+..+.+.+...+..+..+|+.+...-+... .    ...-...++.+...+....+..++..++.+|..+...-.
T Consensus        84 l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g  163 (1207)
T d1u6gc_          84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG  163 (1207)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            35556666666677777777778877765322110 0    000111234445555544456788888888887543111


Q ss_pred             hhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252          225 SKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC  304 (450)
Q Consensus       225 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls  304 (450)
                      .--.-.....++.++..|.+.+..+|..|+.+|..|+..-...  ..  ...+..++..+....+...+..++.+|..++
T Consensus       164 ~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~--~~--~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~  239 (1207)
T d1u6gc_         164 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF--VDLIEHLLSELSKNDSMSTTRTYIQCIAAIS  239 (1207)
T ss_dssp             SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH--HH--HHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            1000011345777777888889999999999999997432211  11  2346677776665445667777888888776


Q ss_pred             cChHHHHHHHh--cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhh----HHHHhc--------cC-----------
Q 041252          305 LLNEVRSLVVS--IGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEG----KLALKD--------CA-----------  358 (450)
Q Consensus       305 ~~~~~~~~iv~--~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~----r~~i~~--------~~-----------  358 (450)
                      .....  .+..  ...++.++..+.+.+.++++.++.++..+... +..    ...+..        +.           
T Consensus       240 ~~~~~--~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~  317 (1207)
T d1u6gc_         240 RQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE  317 (1207)
T ss_dssp             HHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------
T ss_pred             HHcch--hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHH
Confidence            32111  1122  35688899999988999999999999888643 211    111110        00           


Q ss_pred             ------------CChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHH
Q 041252          359 ------------NTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAEL  426 (450)
Q Consensus       359 ------------g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~l  426 (450)
                                  ...+.........+.+++..|+.+|..+....++.. .... ..+++.|+..+... .+.+|..+...
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l-~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~  394 (1207)
T d1u6gc_         318 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML-PEFY-KTVSPALISRFKER-EENVKADVFHA  394 (1207)
T ss_dssp             ------------------------CTTHHHHHHHHHHHHHHTTCCTTH-HHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred             hhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHH-HHHH-HHHHHHHHHHhcCC-chHHHHHHHHH
Confidence                        000111111122345778889999999887766432 2222 34678888777555 56677777665


Q ss_pred             HHHHH
Q 041252          427 LKLCS  431 (450)
Q Consensus       427 L~~ls  431 (450)
                      +..+-
T Consensus       395 l~~l~  399 (1207)
T d1u6gc_         395 YLSLL  399 (1207)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.011  Score=62.24  Aligned_cols=267  Identities=13%  Similarity=0.045  Sum_probs=144.2

Q ss_pred             HHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHh--hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc--hhhhhc
Q 041252          154 LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVD--EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS--ESKTNL  229 (450)
Q Consensus       154 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~--~~k~~i  229 (450)
                      +...+.+.+...|..|+.+|..++....+   .+..  ...++.|+..+.+. +..++..|+++|..++..-  ......
T Consensus       400 l~~~l~s~~~~~reaa~~alg~i~eg~~~---~~~~~l~~li~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~~~~~~~~~~  475 (888)
T d1qbkb_         400 LKELLFHHEWVVKESGILVLGAIAEGCMQ---GMIPYLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTY  475 (888)
T ss_dssp             HHHTTTSSSHHHHHHHHHHHHHHTTTSHH---HHTTTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHTHHHHHSSCHHHH
T ss_pred             HHHhhccchhHHHHHHHHHhhhhhhhHHH---HhcccchhhhHHHHHhccCC-CHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            33455667778888899988877653221   1211  12467788888765 6789999999998765311  111111


Q ss_pred             cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc---
Q 041252          230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL---  305 (450)
Q Consensus       230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~---  305 (450)
                       -...++.++..+.+.++.++..|+.+|.++.... +.....  -..+++.|+..+... .......+..++..++.   
T Consensus       476 -~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~--~~~il~~l~~~l~~~-~~~~~~~~~~al~~l~~~~~  551 (888)
T d1qbkb_         476 -LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY--LAYILDTLVFAFSKY-QHKNLLILYDAIGTLADSVG  551 (888)
T ss_dssp             -TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGG--HHHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHG
T ss_pred             -hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhhh
Confidence             2457888888888899999999999999997432 111111  234667777777654 23344455556665542   


Q ss_pred             ChHHHHHHHhcCCHHHHHHhcC---CCChhHHHHHHHHHHHhcCC--h---hhHHHHhccCCChHHHHHHHh--------
Q 041252          306 LNEVRSLVVSIGAVPQLVELLP---SLDPDCLQLALCILDALSSL--P---EGKLALKDCANTIPNTVRLLM--------  369 (450)
Q Consensus       306 ~~~~~~~iv~~G~v~~Lv~lL~---~~~~~~~~~al~~L~~L~~~--~---e~r~~i~~~~g~i~~Lv~lL~--------  369 (450)
                      ..-++..+.+ -.++.+++...   +.+. .....+..|..++..  .   .....+.+  ..+..+...+.        
T Consensus       552 ~~~~~~~~~~-~l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~  627 (888)
T d1qbkb_         552 HHLNKPEYIQ-MLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCEPVYQ--RCVNLVQKTLAQAMLNNAQ  627 (888)
T ss_dssp             GGGCSHHHHH-HHHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHHSTTTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHC
T ss_pred             ccccchHHHH-HHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHhHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHhcc
Confidence            1111222222 13444554442   2222 233334444433321  1   11111111  01111111111        


Q ss_pred             c-----CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          370 R-----VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       370 ~-----~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                      .     ........+..++..+...-.......+.....++.+...+++. ++.+|+.|..++.-+...
T Consensus       628 ~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~  695 (888)
T d1qbkb_         628 PDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKA  695 (888)
T ss_dssp             TTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHh
Confidence            0     12344555666666655432222223334456777777777665 788999999888776655

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.077  Score=54.24  Aligned_cols=279  Identities=12%  Similarity=0.031  Sum_probs=156.2

Q ss_pred             hhhcHHHHHHHhhccc--hHHHHHHHHHHHHHHHHcHHHHHHHHh--hCChHHHHhhhCCC-CChhhHHHHHHHHHhcCC
Q 041252          147 VQGRASELLGTLKKVK--GQARVQALKELHQIAAAHASARKTMVD--EGGVALISSLLGPF-TSHAVGSEAVGVLVNLTL  221 (450)
Q Consensus       147 ~~~~i~~Lv~~L~~~~--~~~~~~Al~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~~~-~~~~v~~~Al~~L~~Ls~  221 (450)
                      |.+.++.++..+.+.+  ...+..++..|..++.+-..  ..+..  ...++.++..+... .+..++..|+.++.+...
T Consensus       126 Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~  203 (876)
T d1qgra_         126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (876)
T ss_dssp             CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred             cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHH
Confidence            3456778888886643  45677889999988764221  12211  23467777777543 245788888888877433


Q ss_pred             Cc-hhhh-hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHH
Q 041252          222 DS-ESKT-NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSL  299 (450)
Q Consensus       222 ~~-~~k~-~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~a  299 (450)
                      .- ..-. .....-.++.+...+.+++.+++..+..+|..+.......-.-.....+...+.....+. ...+...+...
T Consensus       204 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~  282 (876)
T d1qgra_         204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEF  282 (876)
T ss_dssp             GCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence            21 1110 011112356666777788999999999999998754322111011112333444444443 45566666666


Q ss_pred             HHHhccChHH-HH--------------------HHHhcCCHHHHHHhcCCC-------ChhHHHHHHHHHHHhcCChhhH
Q 041252          300 LRSICLLNEV-RS--------------------LVVSIGAVPQLVELLPSL-------DPDCLQLALCILDALSSLPEGK  351 (450)
Q Consensus       300 L~~Ls~~~~~-~~--------------------~iv~~G~v~~Lv~lL~~~-------~~~~~~~al~~L~~L~~~~e~r  351 (450)
                      +..++..... ..                    .......++.+...+...       +..+...|..+|..++..... 
T Consensus       283 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-  361 (876)
T d1qgra_         283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-  361 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh-
Confidence            6666532110 00                    011112334444444221       234667777777776643211 


Q ss_pred             HHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252          352 LALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       352 ~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls  431 (450)
                       .+..  ..++.+.+.+.+.+...++.++.++..+........... .-...++.+...+.+. ++.++..|...+..+.
T Consensus       362 -~~~~--~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~l~d~-~~~vr~~a~~~l~~~~  436 (876)
T d1qgra_         362 -DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRIC  436 (876)
T ss_dssp             -GGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred             -hhhh--hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHH
Confidence             1111  123344445555567888888888888776543222222 2234677888888776 8999999998888777


Q ss_pred             hhc
Q 041252          432 LNY  434 (450)
Q Consensus       432 ~~~  434 (450)
                      ...
T Consensus       437 ~~~  439 (876)
T d1qgra_         437 ELL  439 (876)
T ss_dssp             HHC
T ss_pred             HHc
Confidence            653

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.049  Score=55.83  Aligned_cols=263  Identities=13%  Similarity=0.014  Sum_probs=153.9

Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCC-CChhhHHHHHHHHHh-cCCCchh-hhh-
Q 041252          153 ELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPF-TSHAVGSEAVGVLVN-LTLDSES-KTN-  228 (450)
Q Consensus       153 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~-~~~~v~~~Al~~L~~-Ls~~~~~-k~~-  228 (450)
                      .++...-+++.+.|..|=+.|..+...+.        .|.+..|..++.+. .+..++..|+-.|.| +...... +.. 
T Consensus         5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~   76 (876)
T d1qgra_           5 TILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   76 (876)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence            34444456677889999999988876532        12466777777543 245678888888877 4332211 110 


Q ss_pred             ------cc---CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCC-CccchhHHHH
Q 041252          229 ------LM---QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKR-HPNGILPGLS  298 (450)
Q Consensus       229 ------i~---~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~-~~~~~~~al~  298 (450)
                            +-   .......++..|.+++. .+..++.++..++..+-....   =.++++.|+..+.++. +...+..++.
T Consensus        77 ~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~---Wpeli~~L~~~l~~~~~~~~~~~~~l~  152 (876)
T d1qgra_          77 QQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLE  152 (876)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             hcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccc---cHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence                  10   12234567777776553 455567777777643210000   1357888998887642 2345667888


Q ss_pred             HHHHhccC-hHHHHHHHhcCCHHHHHHhcCCC--ChhHHHHHHHHHHHhcCChhh---HHHHhccCCChHHHHHHHhcCC
Q 041252          299 LLRSICLL-NEVRSLVVSIGAVPQLVELLPSL--DPDCLQLALCILDALSSLPEG---KLALKDCANTIPNTVRLLMRVS  372 (450)
Q Consensus       299 aL~~Ls~~-~~~~~~iv~~G~v~~Lv~lL~~~--~~~~~~~al~~L~~L~~~~e~---r~~i~~~~g~i~~Lv~lL~~~s  372 (450)
                      +|..++.. ......-.-...++.++..+.+.  +.+++..|+.++.+.......   ...+..  -.++.+...+...+
T Consensus       153 ~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~--~i~~~l~~~~~~~~  230 (876)
T d1qgra_         153 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH--FIMQVVCEATQCPD  230 (876)
T ss_dssp             HHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH--HHHHHHHHHTTCSS
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--HHHHHHHHHhcCCC
Confidence            88888732 11111001124567778877543  567889999888877643211   111111  23455666667778


Q ss_pred             hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252          373 EDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       373 ~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls  431 (450)
                      +.++..++.+|..++...++.... -+.......+.....+. .+..+..+...+..+.
T Consensus       231 ~~v~~~~~~~l~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~  287 (876)
T d1qgra_         231 TRVRVAALQNLVKIMSLYYQYMET-YMGPALFAITIEAMKSD-IDEVALQGIEFWSNVC  287 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSGGGCHH-HHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHH
Confidence            899999999999998877644322 23334445555555555 5667777666555443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.31  Score=49.20  Aligned_cols=272  Identities=9%  Similarity=0.025  Sum_probs=146.7

Q ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHc-HHH-HHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh-hh
Q 041252          152 SELLGTLKKVKGQARVQALKELHQIAAAH-ASA-RKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK-TN  228 (450)
Q Consensus       152 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~-r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k-~~  228 (450)
                      ..++..+.+.+..+|..+...+..++..+ +.+ +.     ..++.|+..+.+..+...+..|+.+|..++..-... ..
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wp-----eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~  172 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP-----ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA  172 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH-----HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchH-----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            45667777777888888888888887542 211 11     235667777766545567777888887765321111 11


Q ss_pred             ccC--CCchHHHHHHhc--CCCHHHHHHHHHHHHHHhccCCChhh-HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 041252          229 LMQ--PAKVSLLVDMLN--EGSVETKINCTRLIEKLMEEKDFRPE-IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI  303 (450)
Q Consensus       229 i~~--~g~i~~Lv~lL~--~~~~~~~~~aa~~L~~La~~~~~~~~-~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L  303 (450)
                      +..  ...+..++..+.  ..+..++..|..++.++...-..... .......++.|...+.++ ++.++..+..+|..+
T Consensus       173 ~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~i  251 (861)
T d2bpta1         173 LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE-DIEVQAAAFGCLCKI  251 (861)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC-CHHHHHHHHHHHHHH
Confidence            111  123344444443  34688999999999888543211110 111234566777777765 677888888888888


Q ss_pred             ccC-hH-HHHHHHhcCCHH-HHHHhcCCCChhHHHHHHHHHHHhcCChhhHH-HHhc-----------------------
Q 041252          304 CLL-NE-VRSLVVSIGAVP-QLVELLPSLDPDCLQLALCILDALSSLPEGKL-ALKD-----------------------  356 (450)
Q Consensus       304 s~~-~~-~~~~iv~~G~v~-~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~-~i~~-----------------------  356 (450)
                      +.. .+ ....+.+  .+. .+.....+.++.++..++..+..++....... ....                       
T Consensus       252 ~~~~~~~~~~~l~~--~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l  329 (861)
T d2bpta1         252 MSKYYTFMKPYMEQ--ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNL  329 (861)
T ss_dssp             HHHHGGGCHHHHHH--THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            632 11 1111111  122 23334455667777777666665543211000 0000                       


Q ss_pred             ---------------------------------cCCChHHHHHHH----hcCChHHHHHHHHHHHHhcccCchhHHHHHH
Q 041252          357 ---------------------------------CANTIPNTVRLL----MRVSEDCTQYALSILWSICKIAPEECSSAAV  399 (450)
Q Consensus       357 ---------------------------------~~g~i~~Lv~lL----~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~  399 (450)
                                                       ....++.+...+    .+.+...++.|+.++..+.............
T Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l  409 (861)
T d2bpta1         330 LNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV  409 (861)
T ss_dssp             HHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Confidence                                             001122222221    1223455666666666666544322221112


Q ss_pred             hcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252          400 DAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN  433 (450)
Q Consensus       400 ~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~  433 (450)
                       ...++.++..+.+. ++.+|..|...+..+...
T Consensus       410 -~~~l~~l~~~l~d~-~~~vr~~a~~~l~~l~~~  441 (861)
T d2bpta1         410 -HQALPSILNLMNDQ-SLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             -HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCc-chhhhhHHHHHHHHHHHH
Confidence             23567777777766 788999999888776655

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.98  E-value=0.054  Score=38.54  Aligned_cols=47  Identities=19%  Similarity=0.212  Sum_probs=38.7

Q ss_pred             eeCcCCCCCCC-----CCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252           70 FVCPISLEPMQ-----DPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELWD  116 (450)
Q Consensus        70 ~~Cpi~~~~m~-----dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~  116 (450)
                      -+|.||++-.-     +|.+++  |++-.||.|.+-=.+.|+..||.|+.++..
T Consensus        17 q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr   70 (93)
T d1weoa_          17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR   70 (93)
T ss_dssp             CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred             chhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhh
Confidence            46999987543     677764  999999999988888899999999988753

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.71  E-value=0.018  Score=50.70  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=19.2

Q ss_pred             HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHH
Q 041252          309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCI  340 (450)
Q Consensus       309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~  340 (450)
                      .|..++..-..+.|..++.+.++.++..++..
T Consensus       154 VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         154 VRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             HHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            44444443445667777777777777766643

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.67  E-value=0.011  Score=52.15  Aligned_cols=103  Identities=13%  Similarity=0.056  Sum_probs=58.0

Q ss_pred             HHHHHhhccchHHHHHHHHHH-----HHHHH-HcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHH-----HHhcCC
Q 041252          153 ELLGTLKKVKGQARVQALKEL-----HQIAA-AHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGV-----LVNLTL  221 (450)
Q Consensus       153 ~Lv~~L~~~~~~~~~~Al~~L-----~~l~~-~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~-----L~~Ls~  221 (450)
                      .|..+++..++.+|..|+..|     ..+.. .+...|..+++.=..+.|..++... +..++..++..     |..+..
T Consensus        70 ~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~-d~~VR~~aa~~~~~~~L~~L~~  148 (233)
T d1lrva_          70 ALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADR-DYLVRAYVVQRIPPGRLFRFMR  148 (233)
T ss_dssp             GGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCS-SHHHHHHHHHHSCGGGGGGTTT
T ss_pred             HHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCC-CHHHHHHHHhccchhHHHHHhc
Confidence            455666777777888777554     22222 2344555555554456777777664 56676666543     222333


Q ss_pred             Cc--hhhhhccCCCchHHHHHHhcCCCHHHHHHHHHH
Q 041252          222 DS--ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRL  256 (450)
Q Consensus       222 ~~--~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~  256 (450)
                      ++  +.+..+...-+.+.|..+++..++.++..++..
T Consensus       149 D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         149 DEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             CSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            22  334444443445566666666777777776643

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=1.3  Score=39.79  Aligned_cols=197  Identities=11%  Similarity=0.144  Sum_probs=139.7

Q ss_pred             cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHH----HHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh
Q 041252          150 RASELLGTLKKVKGQARVQALKELHQIAAAHASAR----KTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES  225 (450)
Q Consensus       150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r----~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~  225 (450)
                      .+..|+..|..-+-+.|..+......+.......|    +.+...  -..|..++....+.++.-.+=.+|+.+..++.-
T Consensus        70 ~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREcik~e~l  147 (330)
T d1upka_          70 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRECIRHEPL  147 (330)
T ss_dssp             HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHH
T ss_pred             hHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHHHhhHHH
Confidence            45567777777778888888777776665332222    223322  133334443333556666777788888888888


Q ss_pred             hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-ChhhHhhh--hhHHHHHHHHHhcCCCccchhHHHHHHHH
Q 041252          226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD-FRPEIVSS--HRLLIGLMRLVKNKRHPNGILPGLSLLRS  302 (450)
Q Consensus       226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~-~~~~~~~~--~g~l~~Lv~lL~~~~~~~~~~~al~aL~~  302 (450)
                      .+.+.....+..+.+....++-++...|..++..|-..+. ...+.+..  .-++...-.+|.++ +=-++..++..|..
T Consensus       148 ak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrRqSlKLLge  226 (330)
T d1upka_         148 AKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLGE  226 (330)
T ss_dssp             HHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence            8888888889999999999999999999999998854332 22222221  23555666777775 45578899999999


Q ss_pred             hccChHHHHHHHh----cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh
Q 041252          303 ICLLNEVRSLVVS----IGAVPQLVELLPSLDPDCLQLALCILDALSSLPE  349 (450)
Q Consensus       303 Ls~~~~~~~~iv~----~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e  349 (450)
                      |-.+..|...|..    ..-+..++.+|++.+..++-.|..+......+|.
T Consensus       227 lLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpn  277 (330)
T d1upka_         227 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN  277 (330)
T ss_dssp             HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred             HHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCC
Confidence            9987777666543    4567888999999999999999999998877654

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=4.4  Score=36.17  Aligned_cols=208  Identities=13%  Similarity=0.073  Sum_probs=145.4

Q ss_pred             ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCC-h---hh-HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 041252          229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF-R---PE-IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI  303 (450)
Q Consensus       229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~-~---~~-~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L  303 (450)
                      +...+.+..|+..|..=+-+.|..++.+..+|....-. +   .+ +.....++..|++   .-.+++.--.+-..|+..
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~---gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLK---GYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHH---GGGSTTTHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHh---hcCCcchhhhhhHHHHHH
Confidence            44467788899989888999999999999888532211 1   11 2222334444443   323566666777778888


Q ss_pred             ccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc-CChhhHHHHhcc--CCChHHHHHHHhcCChHHHHHHH
Q 041252          304 CLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS-SLPEGKLALKDC--ANTIPNTVRLLMRVSEDCTQYAL  380 (450)
Q Consensus       304 s~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~e~r~~i~~~--~g~i~~Lv~lL~~~s~~~~e~A~  380 (450)
                      ..++.....+....-+..+.+.+..++-++...|..++..|- .++.-...+...  .-.....-++|.+.+--++..++
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            899998888999888999999999999999999999999775 445444444430  12455667888888889999999


Q ss_pred             HHHHHhcccCchhHH--HHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCccc
Q 041252          381 SILWSICKIAPEECS--SAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFI  440 (450)
Q Consensus       381 ~~L~~L~~~~~~~~~--~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~i  440 (450)
                      ..|..+-........  +-+-...-+..++.+|++. +..++-.|--+.|++-.|...+.-|
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpnKp~~I  282 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPI  282 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCCCCHHH
Confidence            999988654432211  1112233446666777776 7889999999999998887665543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.83  E-value=3.2  Score=37.62  Aligned_cols=175  Identities=13%  Similarity=0.159  Sum_probs=101.3

Q ss_pred             HHHHhhccchHH-HHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC----C----C--ChhhHHHHHHHHHhcCCC
Q 041252          154 LLGTLKKVKGQA-RVQALKELHQIAAAHASARKTMVDEGGVALISSLLGP----F----T--SHAVGSEAVGVLVNLTLD  222 (450)
Q Consensus       154 Lv~~L~~~~~~~-~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~----~----~--~~~v~~~Al~~L~~Ls~~  222 (450)
                      -+..|+++.... ....+..|+---..++-.+..=..++|+..|+.+|..    .    .  +...+.+.+.+|..+...
T Consensus         7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~   86 (343)
T d2bnxa1           7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN   86 (343)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHHHhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc
Confidence            344554433222 2223444433333444333322355677778877731    1    1  234666788888888887


Q ss_pred             chhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC---CChhhHhhh---------hhHHHHHHHHHhcCCC
Q 041252          223 SESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK---DFRPEIVSS---------HRLLIGLMRLVKNKRH  289 (450)
Q Consensus       223 ~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~---~~~~~~~~~---------~g~l~~Lv~lL~~~~~  289 (450)
                      ......++ .+.++..++..|.+.+..++..|..+|..++...   +....+..+         .+-+..++..++.+.+
T Consensus        87 ~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~  166 (343)
T d2bnxa1          87 KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTS  166 (343)
T ss_dssp             HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSC
T ss_pred             HHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcccc
Confidence            76666554 5899999999999999999999999999887432   122222211         1234566666665444


Q ss_pred             ccchhHHHHHHHHhccC-h--H----HHHHHHhcCCHHHHHHhcCCC
Q 041252          290 PNGILPGLSLLRSICLL-N--E----VRSLVVSIGAVPQLVELLPSL  329 (450)
Q Consensus       290 ~~~~~~al~aL~~Ls~~-~--~----~~~~iv~~G~v~~Lv~lL~~~  329 (450)
                      .+.+.+++..+-.|... +  +    .|..+..+|..+. ++-|+..
T Consensus       167 ~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~i-l~~l~~~  212 (343)
T d2bnxa1         167 IALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELREI  212 (343)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH-HHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHH-HHHHHcc
Confidence            45555666666666532 2  2    3555666775554 4455443

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.85  E-value=2.6  Score=38.28  Aligned_cols=117  Identities=15%  Similarity=0.144  Sum_probs=83.5

Q ss_pred             hcCCHHHHHHhcC----C-------CChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252          315 SIGAVPQLVELLP----S-------LDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL  383 (450)
Q Consensus       315 ~~G~v~~Lv~lL~----~-------~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  383 (450)
                      ..+|+..|+.+|.    .       .+....-.++.+|..+..+..|...+..+..++..++..|.+....++..|..+|
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL  122 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  122 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHH
Confidence            3456677777761    1       1245677899999999999999999988899999999999988899999999999


Q ss_pred             HHhcccCc--h-h-HHH-------HHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252          384 WSICKIAP--E-E-CSS-------AAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS  431 (450)
Q Consensus       384 ~~L~~~~~--~-~-~~~-------~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls  431 (450)
                      ..+|....  + . ..-       ..-+.+-+..++.-+.++.+...+-.+..++..+-
T Consensus       123 ~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li  181 (343)
T d2bnxa1         123 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI  181 (343)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            99996532  1 1 111       11234667778877776655566665555555443

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.12  E-value=1.3  Score=35.04  Aligned_cols=78  Identities=13%  Similarity=0.147  Sum_probs=62.5

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252          360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT  437 (450)
Q Consensus       360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~  437 (450)
                      ++..|.+.|.+.++.++..|+.+|-.+..++......++...+.+..|..++.+.....+|++...++..-+..+.+.
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS  120 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            345677778888899999999999999998865555566667788888888888767889999999999988775543