Citrus Sinensis ID: 041261

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
AVWGQKNGSHNSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDIGWQPYYFACDERGGLHWRDGRMKFMVLPLLRRWHY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEcccccccccccHHHHHcccccEEEccEEEEEEcccccccccEEEEEcccccccccEEcccccEEEEcccccccccccccEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEEEccccccccccHHHHHHccccEEEccEEEEEEcccccccccccEEEEccccHHcccccccccEEEEEccccccccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
avwgqkngshnsnntsdddgpnkiivgssdnwhfgfnysvwafqnapfyvndvlvfkydppndtvfphseyllpnlwsylrcdigwqpyyfacdergglhwrdgrmkfmvlpllrrwhy
Flexible Loop (DISEMBL)
avwgqkngshnsnntsdddgpnKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDIGWQPYYFACDERGGLHWRDGRMKFMvlpllrrwhy
Low Complexity Region (SEG)
AVWGQKNGSHNSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDIGWQPYYFACDERGGLHWRDGRMKFMVLPLLRRWHY
Disordered region (IsUnstruct)
***********************IIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDIGWQPYYFACDERGGLHWRDGRMKFMVLPLLRRW**
Disordered Region (DISOPRED)
**********************KIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDIGWQPYYFACDERGGLHWRDGRMKFMVLPLLRRW**
Disordered Region (DISEMBL)
**************TSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDIGWQPYYFACDERGGLHWRDGRMKFMVLPLLRRWHY
Disordered Region (DISPRO)
*V***K**********DDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDIGWQPYYFACDERGGLHWRDGRMKFMVLPLLRRWHY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
AVWGQKNGSHNSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDIGWQPYYFACDERGGLHWRDGRMKFMVLPLLRRWHY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
356500066	177	PREDICTED: uncharacterized protein LOC10	0.882	0.593	0.503	2e-30
147858315	184	hypothetical protein VITISV_035937 [Viti	0.991	0.641	0.478	2e-29
225428719	185	PREDICTED: uncharacterized protein LOC10	0.991	0.637	0.482	2e-29
225428713	166	PREDICTED: uncharacterized protein LOC10	0.991	0.710	0.485	2e-29
255561679	169	conserved hypothetical protein [Ricinus	0.983	0.692	0.485	4e-29
225428711	181	PREDICTED: uncharacterized protein LOC10	0.966	0.635	0.478	4e-29
359475388	181	PREDICTED: uncharacterized protein LOC10	0.966	0.635	0.478	5e-29
297741325	204	unnamed protein product [Vitis vinifera]	0.991	0.578	0.464	5e-29
297741327	1568	unnamed protein product [Vitis vinifera]	0.957	0.072	0.492	5e-29
225428717	166	PREDICTED: uncharacterized protein LOC10	0.991	0.710	0.464	9e-29

>gi|356500066|ref|XP_003518855.1| PREDICTED: uncharacterized protein LOC100803580 [Glycine max]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 78/127 (61%), Gaps = 22/127 (17%)

Query: 11  NSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSE 70
           N +    +  P KIIVG S+ WHFGFNY+ WAF+N PFY+ND LVFKYD PN T FPHS 
Sbjct: 45  NRHQNKTEQEPRKIIVGGSEGWHFGFNYTDWAFKNGPFYLNDTLVFKYDAPNATSFPHSV 104

Query: 71  YLLPNLWSYLRCDIG----------------------WQPYYFACDERGGLHWRDGRMKF 108
           Y+ PNLWS+L CD+                       WQPY+FAC ER G H   G+MKF
Sbjct: 105 YIFPNLWSFLNCDVKSAKMLANPTQGGGEGFHFVLNRWQPYFFACGERNGFHCNSGQMKF 164

Query: 109 MVLPLLR 115
            V+P++R
Sbjct: 165 AVMPIIR 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858315|emb|CAN81417.1| hypothetical protein VITISV_035937 [Vitis vinifera]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 82/140 (58%), Gaps = 22/140 (15%)

Query: 1   AVWGQKNGSHNSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDP 60
           + WG +NG     N +    P K IVG SD+W +GFNY+ W F N PFYVND LVFKYDP
Sbjct: 44  SFWGPRNGHPFHPNNNSTRPPKKFIVGGSDHWRYGFNYTDWVFNNGPFYVNDTLVFKYDP 103

Query: 61  PNDTVFPHSEYLLPNLWSYLRCDIG----------------------WQPYYFACDERGG 98
           P+ T FPHS YLLPNL S++ CD+                       W P+YFAC E  G
Sbjct: 104 PSKTTFPHSVYLLPNLRSFMTCDLSRAEQVATVAQGGGEGFEFVLKNWWPHYFACGEHDG 163

Query: 99  LHWRDGRMKFMVLPLLRRWH 118
           LH ++G MKF V+PLL  +H
Sbjct: 164 LHCKEGMMKFFVMPLLGPYH 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428719|ref|XP_002281903.1| PREDICTED: uncharacterized protein LOC100245201 [Vitis vinifera] gi|297741324|emb|CBI32455.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 84/141 (59%), Gaps = 23/141 (16%)

Query: 1   AVWGQKNG-SHNSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYD 59
           + WG +NG   + NN +    P K IVG S++W +GFNY+ WA  N PFYVND LVFKYD
Sbjct: 44  SFWGPRNGHPFHPNNNNTTRPPKKFIVGGSEHWRYGFNYTDWALNNGPFYVNDTLVFKYD 103

Query: 60  PPNDTVFPHSEYLLPNLWSYLRCDIG----------------------WQPYYFACDERG 97
           PP+ T FPHS YLLPN WS+L CD+                       W P+YFAC E  
Sbjct: 104 PPSKTTFPHSVYLLPNPWSFLTCDLSKAEQVATVAQGGGEGFEFVLKNWWPHYFACGEHD 163

Query: 98  GLHWRDGRMKFMVLPLLRRWH 118
           GLH ++G MKF V+PLL  +H
Sbjct: 164 GLHCKEGMMKFFVMPLLGPYH 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428713|ref|XP_002281861.1| PREDICTED: uncharacterized protein LOC100243470 [Vitis vinifera]

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 83/140 (59%), Gaps = 22/140 (15%)

Query: 1   AVWGQKNGSHNSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDP 60
           + WG +NG     N ++   P K IVG SD+W +GFNY+ WA  N PFYVND LVFKYDP
Sbjct: 26  SFWGPRNGHPFHPNNNNTRPPKKFIVGGSDHWRYGFNYTDWALNNGPFYVNDTLVFKYDP 85

Query: 61  PNDTVFPHSEYLLPNLWSYLRCDIG----------------------WQPYYFACDERGG 98
           P+ T FPHS YLLPNL S+L CD+                       W P+YFAC E  G
Sbjct: 86  PSKTTFPHSVYLLPNLRSFLTCDLSRAEQVATVAQGGGEGFEFVLKNWWPHYFACGEHDG 145

Query: 99  LHWRDGRMKFMVLPLLRRWH 118
           LH ++G MKF V+PLL  +H
Sbjct: 146 LHCKEGMMKFFVMPLLGPYH 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561679|ref|XP_002521849.1| conserved hypothetical protein [Ricinus communis] gi|223538887|gb|EEF40485.1| conserved hypothetical protein [Ricinus communis]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 84/140 (60%), Gaps = 23/140 (16%)

Query: 3   WGQKNGSHNSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPN 62
           +G  +  H   +    D P KI+VG S NW FGF+Y+VWAF+N PFY+ND LVFKYD P 
Sbjct: 30  YGWNSPKHGHRHPKYTDTPKKIVVGGSANWTFGFDYTVWAFRNGPFYLNDTLVFKYDLPK 89

Query: 63  D-TVFPHSEYLLPNLWSYLRCDIG----------------------WQPYYFACDERGGL 99
           D +  PHS YLLP+LWS+L C++                       WQPY+FAC    G+
Sbjct: 90  DNSTHPHSVYLLPDLWSFLTCNLTEAVMIADGSQGGGNGFEFVLNKWQPYFFACGGGEGI 149

Query: 100 HWRDGRMKFMVLPLLRRWHY 119
           H   G+MKF VLPLLRRWHY
Sbjct: 150 HCNLGKMKFYVLPLLRRWHY 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428711|ref|XP_002281852.1| PREDICTED: uncharacterized protein LOC100248603 [Vitis vinifera] gi|297741328|emb|CBI32459.3| unnamed protein product [Vitis vinifera]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 84/140 (60%), Gaps = 25/140 (17%)

Query: 1   AVWGQKNGSHNSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDP 60
           ++WG +N   + NNT     P K IVG S+ W +GFNY+ WA +N PFY+ND LVFKYDP
Sbjct: 44  SIWGPRNNPFHPNNTRP---PKKFIVGGSERWRYGFNYTDWALKNGPFYINDTLVFKYDP 100

Query: 61  PNDTVFPHSEYLLPNLWSYLRCDI---------------GWQ-------PYYFACDERGG 98
           PN T FPHS YLLPN  S+L CD+               G++       P+YFAC E  G
Sbjct: 101 PNSTTFPHSVYLLPNFGSFLTCDLSRAKQVATVAQGGSKGFEFVLKNLWPHYFACGEHNG 160

Query: 99  LHWRDGRMKFMVLPLLRRWH 118
           LH ++G MKF V+PL R  H
Sbjct: 161 LHCKEGMMKFSVMPLFRPCH 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475388|ref|XP_002281892.2| PREDICTED: uncharacterized protein LOC100255503 [Vitis vinifera] gi|297741326|emb|CBI32457.3| unnamed protein product [Vitis vinifera]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 84/140 (60%), Gaps = 25/140 (17%)

Query: 1   AVWGQKNGSHNSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDP 60
           ++WG +N   + NNT     P K IVG S+ W +GFNY+ WA +N PFY+ND LVFKYDP
Sbjct: 44  SIWGPRNNPFHPNNTRP---PKKFIVGGSERWRYGFNYTDWALKNGPFYINDTLVFKYDP 100

Query: 61  PNDTVFPHSEYLLPNLWSYLRCDI---------------GWQ-------PYYFACDERGG 98
           PN T FPHS YLLPN  S+L CD+               G++       P+YFAC E  G
Sbjct: 101 PNSTTFPHSVYLLPNFGSFLTCDLSRAKQVATVAQGGSKGFEFVLKNLWPHYFACGEHNG 160

Query: 99  LHWRDGRMKFMVLPLLRRWH 118
           LH ++G MKF V+PL R  H
Sbjct: 161 LHCKEGMMKFSVMPLFRPCH 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741325|emb|CBI32456.3| unnamed protein product [Vitis vinifera]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 82/140 (58%), Gaps = 22/140 (15%)

Query: 1   AVWGQKNGSHNSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDP 60
           + WG +NG     N +    P K IVG SD+W +GFNY+ W F N PFYVND LVFKYDP
Sbjct: 64  SFWGPRNGHPFHPNNNSTRPPKKFIVGGSDHWRYGFNYTDWVFNNGPFYVNDTLVFKYDP 123

Query: 61  PNDTVFPHSEYLLPNLWSYLRCDIG----------------------WQPYYFACDERGG 98
           P+ T FPHS YLLPNL S++ CD+                       W P+YFAC E  G
Sbjct: 124 PSKTTFPHSVYLLPNLRSFMTCDLSRAEQVATVAQGGGEGFEFVLKNWWPHYFACGEHDG 183

Query: 99  LHWRDGRMKFMVLPLLRRWH 118
           +H ++G MKF V+PL+  +H
Sbjct: 184 VHCKEGMMKFFVMPLIGPYH 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741327|emb|CBI32458.3| unnamed protein product [Vitis vinifera]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 67/136 (49%), Positives = 81/136 (59%), Gaps = 22/136 (16%)

Query: 1   AVWGQKNGSHNSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDP 60
           + WG +NG     N ++   P K IVG SD+W +GFNY+ WA  N PFYVND LVFKYDP
Sbjct: 44  SFWGPRNGHPFHPNNNNTRPPKKFIVGGSDHWRYGFNYTDWALNNGPFYVNDTLVFKYDP 103

Query: 61  PNDTVFPHSEYLLPNLWSYLRCDIG----------------------WQPYYFACDERGG 98
           P+ T FPHS YLLPNL S+L CD+                       W P+YFAC E  G
Sbjct: 104 PSKTTFPHSVYLLPNLRSFLTCDLSRAEQVATVAQGGGEGFEFVLKNWWPHYFACGEHDG 163

Query: 99  LHWRDGRMKFMVLPLL 114
           LH ++G MKF V+PLL
Sbjct: 164 LHCKEGMMKFFVMPLL 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428717|ref|XP_002281899.1| PREDICTED: uncharacterized protein LOC100250324 [Vitis vinifera]

 Score =  130 bits (327), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 82/140 (58%), Gaps = 22/140 (15%)

Query: 1   AVWGQKNGSHNSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDP 60
           + WG +NG     N +    P K IVG SD+W +GFNY+ W F N PFYVND LVFKYDP
Sbjct: 26  SFWGPRNGHPFHPNNNSTRPPKKFIVGGSDHWRYGFNYTDWVFNNGPFYVNDTLVFKYDP 85

Query: 61  PNDTVFPHSEYLLPNLWSYLRCDIG----------------------WQPYYFACDERGG 98
           P+ T FPHS YLLPNL S++ CD+                       W P+YFAC E  G
Sbjct: 86  PSKTTFPHSVYLLPNLRSFMTCDLSRAEQVATVAQGGGEGFEFVLKNWWPHYFACGEHDG 145

Query: 99  LHWRDGRMKFMVLPLLRRWH 118
           +H ++G MKF V+PL+  +H
Sbjct: 146 VHCKEGMMKFFVMPLIGPYH 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2044611	257	AT2G15780 [Arabidopsis thalian	0.655	0.303	0.524	1.2e-28
TAIR|locus:2044621	301	AT2G15770 [Arabidopsis thalian	0.672	0.265	0.471	1.8e-22
TAIR|locus:2116199	313	AT4G34300 [Arabidopsis thalian	0.647	0.246	0.371	2.3e-07
TAIR|locus:2118909	343	AT4G33930 [Arabidopsis thalian	0.579	0.201	0.375	5.9e-07
TAIR|locus:4010713753	106	AT3G17675 [Arabidopsis thalian	0.277	0.311	0.5	0.00093

TAIR|locus:2044611 AT2G15780 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
 Identities = 43/82 (52%), Positives = 55/82 (67%)

Query:     3 WGQKNGSHNSNNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPN 62
             WG   G H+ N  +  +GP KIIVG    W +GFNY+ WA + APF++ND+LVFKY+PP 
Sbjct:   125 WGY--GGHSKNYNATYNGPRKIIVGGDKEWTYGFNYADWASKTAPFFLNDILVFKYNPP- 181

Query:    63 DTVFPHSEYLLPNLWSYLRCDI 84
                F HS YLLPN  SY +CD+
Sbjct:   182 -APFTHSVYLLPNPSSYEKCDV 202

GO:0005507 "copper ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

TAIR|locus:2044621 AT2G15770 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 41/87 (47%), Positives = 50/87 (57%)

Query:     3 WGQKNGSHNSNNTSDDDG-----PNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFK 57
             WG  +   NS+ +    G     P KIIVG SD W  G +Y  WA +NAPFYVNDVLVFK
Sbjct:   120 WGSNDNDSNSSGSDSGSGLDRETPKKIIVGGSDGWKKGLDYKDWASKNAPFYVNDVLVFK 179

Query:    58 YDPPNDTVFPHSEYLLPNLWSYLRCDI 84
             YD        ++ YL  + WSY+ CDI
Sbjct:   180 YD--KSAKRRNNVYLFKDRWSYMNCDI 204

GO:0005507 "copper ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

TAIR|locus:2116199 AT4G34300 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 36/97 (37%), Positives = 54/97 (55%)

Query:     4 GQKNGSHNSN---NTSDDDGPN---KIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFK 57
             G  +GS++S+   +T +   P+   KI V     W  G+ Y+ W  ++APFYVNDVLVF 
Sbjct:   167 GHSSGSNHSSIIGSTHNHTAPSLGRKIAVTV---WKNGYGYTEWTAKHAPFYVNDVLVFT 223

Query:    58 YDPPND-----TVFPHSE-----YLLPNLWSYLRCDI 84
             Y+  ND     T   H +     YLLP++ S+ RC++
Sbjct:   224 YNN-NDQTQSKTKHHHDKKKNDVYLLPDMKSFKRCNV 259

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2118909 AT4G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 30/80 (37%), Positives = 43/80 (53%)

Query:    13 NNTSDDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKY--DPPNDTVFPHSE 70
             N+T+      KI V     W  G+ Y+ W  ++APFYV+DVLVFKY  D    +   H  
Sbjct:   213 NHTAPIPAGRKIAVTV---WKNGYGYTEWTAKHAPFYVSDVLVFKYNNDDQTQSKTKHRN 269

Query:    71 ------YLLPNLWSYLRCDI 84
                   YLLP++ S+ RC++
Sbjct:   270 KKKNDVYLLPDMKSFKRCNV 289

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:4010713753 AT3G17675 [Arabidopsis thaliana (taxid:3702)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query:    25 IVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKY 58
             IVG S+ W    NY+ W  Q   F+V DVLVF Y
Sbjct:    10 IVGDSNGWELFTNYTNWT-QGREFHVGDVLVFNY 42


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.142   0.515    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      119       119   0.00091  102 3  12 22  0.49    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  137 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.24u 0.19s 12.43t   Elapsed:  00:00:01
  Total cpu time:  12.25u 0.19s 12.44t   Elapsed:  00:00:01
  Start:  Fri May 10 05:23:25 2013   End:  Fri May 10 05:23:26 2013

GO:0005507 "copper ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036537001 SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (166 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
PLN03148	167	PLN03148, PLN03148, Blue copper-like protein; Prov	6e-05

>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional

 Score = 39.9 bits (93), Expect = 6e-05
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 25 IVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVF 66
          IVG++  W+ G NY++WA  N  FYV D++ F+Y      VF
Sbjct: 24 IVGANKGWNPGINYTLWA-NNQTFYVGDLISFRYQKTQYNVF 64

Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
PLN03148	167	Blue copper-like protein; Provisional	100.0
PF02298	85	Cu_bind_like: Plastocyanin-like domain; InterPro:	99.93
PF00127	99	Copper-bind: Copper binding proteins, plastocyanin	96.67
TIGR02656	99	cyanin_plasto plastocyanin. Members of this family	96.52
KOG3858	233	consensus Ephrin, ligand for Eph receptor tyrosine	96.39
PF00812	145	Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a	96.16
PF06525	196	SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb	96.14
COG3794	128	PetE Plastocyanin [Energy production and conversio	95.59
PRK02710	119	plastocyanin; Provisional	95.49
TIGR03102	115	halo_cynanin halocyanin domain. Halocyanins are bl	95.35
TIGR02375	116	pseudoazurin pseudoazurin. Pseudoazurin, also call	95.31
TIGR03094	195	sulfo_cyanin sulfocyanin. Members of this family a	94.22
TIGR03095	148	rusti_cyanin rusticyanin. Rusticyanin is a blue co	87.61
TIGR02657	83	amicyanin amicyanin. Members of this family are am	84.12

>PLN03148 Blue copper-like protein; Provisional

Probab=100.00  E-value=1.7e-33  Score=214.26  Aligned_cols=87  Identities=31%  Similarity=0.633  Sum_probs=80.6

Q ss_pred             CCCCCcEEEecCCCCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC------------
Q 041261           17 DDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI------------   84 (119)
Q Consensus        17 ~~~~a~~~~VGg~~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~------------   84 (119)
                      ..+.|++|+|||+.||+.+.||++||+ +++|+|||+|+|+|+++     +|||+|| ++++|++|+.            
T Consensus        16 ~~~~a~~~~VGd~~GW~~~~~Y~~WA~-~k~F~VGD~LvF~Y~~~-----~hnV~~V-~~~~Y~~C~~~~pi~~~tsG~d   88 (167)
T PLN03148         16 SATTATDHIVGANKGWNPGINYTLWAN-NQTFYVGDLISFRYQKT-----QYNVFEV-NQTGYDNCTTEGAAGNWTSGKD   88 (167)
T ss_pred             hhccceEEEeCCCCCcCCCCChhHhhc-CCCCccCCEEEEEecCC-----CceEEEE-ChHHcCcccCCCCcceecCCCc
Confidence            466799999999999999999999998 69999999999999998     7999999 9999999997            


Q ss_pred             -----CCcceEEEccCCCCCCCCCCcceEEEEecC
Q 041261           85 -----GWQPYYFACDERGGLHWRDGRMKFMVLPLL  114 (119)
Q Consensus        85 -----~~G~~YFiCg~~~g~HC~~G~mKl~V~p~~  114 (119)
                           ++|++||||+ .  +||+.| |||+|.+.+
T Consensus        89 ~v~L~~~G~~YFIcg-~--ghC~~G-mKl~I~V~~  119 (167)
T PLN03148         89 FIPLNKAKRYYFICG-N--GQCFNG-MKVTILVHP  119 (167)
T ss_pred             EEEecCCccEEEEcC-C--CccccC-CEEEEEEcC
Confidence                 8899999999 6  799999 999988654

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=99.93  E-value=3e-27  Score=161.51  Aligned_cols=65  Identities=35%  Similarity=0.615  Sum_probs=53.1

Q ss_pred             CCCCC---CchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-----------------CCcceEE
Q 041261           32 WHFGF---NYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-----------------GWQPYYF   91 (119)
Q Consensus        32 W~~~~---nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-----------------~~G~~YF   91 (119)
                      |+++.   +|++||+ +++|+|||+|+|+|+++     +|+|+|| ++++|++|+.                 ++|++||
T Consensus         1 W~~~~~~~~Y~~Wa~-~~~F~vGD~LvF~y~~~-----~h~V~~V-~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YF   73 (85)
T PF02298_consen    1 WTIPTNASNYTDWAS-GKTFRVGDTLVFNYDSG-----QHSVVEV-SKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYF   73 (85)
T ss_dssp             SSSSSSTTHHHHHHC-TS-BETTEEEEEE--TT-----TB-EEEE-SHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEE
T ss_pred             CccCCCccchhHhhc-CCcEeCCCEEEEEecCC-----CCeEEec-ChhhCccCCCCCceecccCCCEEEEeCCCcCeEE
Confidence            88887   8999998 69999999999999998     7999999 7999999998                 8899999


Q ss_pred             EccCCCCCCCCCCcc
Q 041261           92 ACDERGGLHWRDGRM  106 (119)
Q Consensus        92 iCg~~~g~HC~~G~m  106 (119)
                      ||+++  +||+.| |
T Consensus        74 ic~~~--~HC~~G-q   85 (85)
T PF02298_consen   74 ICGVP--GHCQKG-Q   85 (85)
T ss_dssp             E--ST--TTTTTT--
T ss_pred             EeCCC--Cccccc-C
Confidence            99999  999999 8

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.

>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=96.67  E-value=0.0063  Score=41.60  Aligned_cols=58  Identities=16%  Similarity=0.236  Sum_probs=41.7

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcc-cCcc------------cCC---------CCcceEEEccCCCCCCCCC
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW-SYLR------------CDI---------GWQPYYFACDERGGLHWRD  103 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~-~Y~~------------C~~---------~~G~~YFiCg~~~g~HC~~  103 (119)
                      -++++||++.|......    .|||....+.. .-..            ...         ++|.|.|+|. +   |...
T Consensus        19 i~V~~G~tV~~~n~~~~----~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P---H~~~   90 (99)
T PF00127_consen   19 ITVKAGDTVTFVNNDSM----PHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P---HYEA   90 (99)
T ss_dssp             EEEETTEEEEEEEESSS----SBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T---TGGT
T ss_pred             EEECCCCEEEEEECCCC----CceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C---Cccc
Confidence            46789999999995332    79999984321 0000            111         8999999999 8   9999


Q ss_pred             CcceEEEEe
Q 041261          104 GRMKFMVLP  112 (119)
Q Consensus       104 G~mKl~V~p  112 (119)
                      | |+=.|.+
T Consensus        91 G-M~G~i~V   98 (99)
T PF00127_consen   91 G-MVGTIIV   98 (99)
T ss_dssp             T-SEEEEEE
T ss_pred             C-CEEEEEE
Confidence            9 9877764

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....

>TIGR02656 cyanin_plasto plastocyanin

Probab=96.52  E-value=0.01  Score=40.67  Aligned_cols=58  Identities=19%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             CCCeEeCcEEEEEeCCCCCCccccceEEecCcc----------cCcccCC-------------CCcceEEEccCCCCCCC
Q 041261           45 NAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----------SYLRCDI-------------GWQPYYFACDERGGLHW  101 (119)
Q Consensus        45 ~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----------~Y~~C~~-------------~~G~~YFiCg~~~g~HC  101 (119)
                      .-++++||++.|.-+..    ..|+|+.. +..          .+..=+.             .+|.|-|.|.    .|+
T Consensus        18 ~i~v~~G~~V~~~N~~~----~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~----~H~   88 (99)
T TIGR02656        18 KISIAAGDTVEWVNNKG----GPHNVVFD-EDAVPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE----PHR   88 (99)
T ss_pred             EEEECCCCEEEEEECCC----CCceEEEC-CCCCccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC----Ccc
Confidence            35889999999995433    27998875 221          1100010             8899999998    499


Q ss_pred             CCCcceEEEEe
Q 041261          102 RDGRMKFMVLP  112 (119)
Q Consensus       102 ~~G~mKl~V~p  112 (119)
                      +.| |+-.|.+
T Consensus        89 ~aG-M~G~I~V   98 (99)
T TIGR02656        89 GAG-MVGKITV   98 (99)
T ss_pred             ccC-CEEEEEE
Confidence            999 9988864

Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.

>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]

Probab=96.39  E-value=0.01  Score=47.86  Aligned_cols=43  Identities=19%  Similarity=0.226  Sum_probs=27.7

Q ss_pred             hhcCCCCeEe---------CcEEEEEeCCCCCC----ccccceEEecCcccCcccCC
Q 041261           41 WAFQNAPFYV---------NDVLVFKYDPPNDT----VFPHSEYLLPNLWSYLRCDI   84 (119)
Q Consensus        41 WA~~~k~F~v---------GD~LvF~Y~~~~~~----~~~h~V~~V~~~~~Y~~C~~   84 (119)
                      |-+.|..|+.         ||.|-+--+....+    ..++=+|+| ++++|+.|+.
T Consensus        31 WNSSNp~F~~~d~vI~v~igD~ldIiCP~~e~~~~~~~E~yilYmV-~~~~y~~C~~   86 (233)
T KOG3858|consen   31 WNSSNPRFRRGDYVIYVQIGDYLDIICPHYEEGGPEGYEYYILYMV-SEEEYDLCEL   86 (233)
T ss_pred             ecCCCcceecCCceEEeccCCEEEEECCCCCCCCCCcceEEEEEEe-ChHHhhhhhc
Confidence            4444666655         78887744332222    234567788 9999999996

>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO)

Probab=96.16  E-value=0.0029  Score=47.43  Aligned_cols=36  Identities=14%  Similarity=0.098  Sum_probs=24.5

Q ss_pred             eEeCcEEEEEeCCCCCC------ccccceEEecCcccCcccCC
Q 041261           48 FYVNDVLVFKYDPPNDT------VFPHSEYLLPNLWSYLRCDI   84 (119)
Q Consensus        48 F~vGD~LvF~Y~~~~~~------~~~h~V~~V~~~~~Y~~C~~   84 (119)
                      +++||.|-|--+.....      .....+++| ++++|+.|+.
T Consensus        26 V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~   67 (145)
T PF00812_consen   26 VRIGDYLDIICPHYEPGGPPPEEYEYYILYMV-SEEGYESCSL   67 (145)
T ss_dssp             E-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE--HHHHHHTBS
T ss_pred             ecCCCEEEEECCCCCCCCCCCCCceEEEEEEE-cHHHhcccCC
Confidence            45699999976654332      256789999 9999999996

These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....

>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus

Probab=96.14  E-value=0.023  Score=44.81  Aligned_cols=59  Identities=14%  Similarity=0.105  Sum_probs=45.5

Q ss_pred             eCcEEEEEeCCCCCCccccceEEecCcccCcccCC------------------------------------CCcceEEEc
Q 041261           50 VNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI------------------------------------GWQPYYFAC   93 (119)
Q Consensus        50 vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~------------------------------------~~G~~YFiC   93 (119)
                      +|-.+.|++...  ..+.|+++.|++...+..+..                                    .+|.||++|
T Consensus        92 AGw~V~i~f~N~--~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC  169 (196)
T PF06525_consen   92 AGWNVQITFTNQ--ESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC  169 (196)
T ss_pred             CCCEEEEEEEcC--CCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence            488888888754  246999999966654444422                                    899999999


Q ss_pred             cCCCCCCCCCCcceEEEEec
Q 041261           94 DERGGLHWRDGRMKFMVLPL  113 (119)
Q Consensus        94 g~~~g~HC~~G~mKl~V~p~  113 (119)
                      +.+  +|=+.| |-..+.+.
T Consensus       170 ~ip--GHA~sG-Mw~~LiVs  186 (196)
T PF06525_consen  170 GIP--GHAESG-MWGVLIVS  186 (196)
T ss_pred             cCC--ChhhcC-CEEEEEEe
Confidence            999  999999 97776643

The most closely related proteins characterised as functionally different are the rusticyanins.

>COG3794 PetE Plastocyanin [Energy production and conversion]

Probab=95.59  E-value=0.057  Score=39.87  Aligned_cols=58  Identities=17%  Similarity=0.182  Sum_probs=42.1

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCc----ccCcccCC---------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNL----WSYLRCDI---------GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~----~~Y~~C~~---------~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      -+..+||++.|.+....    .|||..+...    .+...=..         .+|.|.|+|.-    |=..| ||=.|.+
T Consensus        56 v~v~pGDTVtw~~~d~~----~Hnv~~~~~~~~~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P----H~~~g-M~G~IvV  126 (128)
T COG3794          56 VTVKPGDTVTWVNTDSV----GHNVTAVGGMDPEGSGTLKAGINESFTHTFETPGEYTYYCTP----HPGMG-MKGKIVV  126 (128)
T ss_pred             EEECCCCEEEEEECCCC----CceEEEeCCCCcccccccccCCCcceEEEecccceEEEEecc----CCCCC-cEEEEEe
Confidence            58899999999998762    5999998544    11111110         79999999994    67788 8877764

>PRK02710 plastocyanin; Provisional

Probab=95.49  E-value=0.1  Score=37.05  Aligned_cols=58  Identities=16%  Similarity=0.191  Sum_probs=39.3

Q ss_pred             CCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccC--C-----------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261           45 NAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCD--I-----------GWQPYYFACDERGGLHWRDGRMKFMVL  111 (119)
Q Consensus        45 ~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~--~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V~  111 (119)
                      .-++.+||++.|.-....    .|++..- ....+..=+  .           .+|.|-|+|.    .|=+.| |+-.|.
T Consensus        48 ~i~v~~Gd~V~~~N~~~~----~H~v~~~-~~~~~~~~~~~~~pg~t~~~tF~~~G~y~y~C~----~H~~~g-M~G~I~  117 (119)
T PRK02710         48 TLTIKAGDTVKWVNNKLA----PHNAVFD-GAKELSHKDLAFAPGESWEETFSEAGTYTYYCE----PHRGAG-MVGKIT  117 (119)
T ss_pred             EEEEcCCCEEEEEECCCC----CceEEec-CCccccccccccCCCCEEEEEecCCEEEEEEcC----CCccCC-cEEEEE
Confidence            358899999999864332    7998643 222210000  1           8899999998    388889 998887


Q ss_pred             e
Q 041261          112 P  112 (119)
Q Consensus       112 p  112 (119)
                      +
T Consensus       118 V  118 (119)
T PRK02710        118 V  118 (119)
T ss_pred             E
Confidence            5

>TIGR03102 halo_cynanin halocyanin domain

Probab=95.35  E-value=0.2  Score=36.09  Aligned_cols=79  Identities=15%  Similarity=0.098  Sum_probs=52.3

Q ss_pred             CCCCcEEEec--CCC-CCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccC----C------
Q 041261           18 DDGPNKIIVG--SSD-NWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCD----I------   84 (119)
Q Consensus        18 ~~~a~~~~VG--g~~-gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~----~------   84 (119)
                      .+...+..||  ++. +..+.+.       .-++++||++.|..+...   ..|+|.-. +...|+.=.    .      
T Consensus        20 ~~~~~~v~~G~~~~~g~~~F~P~-------~ltV~~GdTVtw~~~~d~---~~HnV~s~-~~~~f~s~~~~~~~G~t~s~   88 (115)
T TIGR03102        20 GQDEVTVDVGAEANGGGFAFDPP-------AIRVDPGTTVVWEWTGEG---GGHNVVSD-GDGDLDESERVSEEGTTYEH   88 (115)
T ss_pred             CCceEEEEecccCCCCceeEeCC-------EEEECCCCEEEEEECCCC---CCEEEEEC-CCCCccccccccCCCCEEEE
Confidence            3456678888  222 2444332       358899999999986421   16999764 445565321    1      


Q ss_pred             ---CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 ---GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ---~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                         ++|.|-|+|..    |=..| ||=.|.+
T Consensus        89 Tf~~~G~Y~Y~C~p----H~~~g-M~G~I~V  114 (115)
T TIGR03102        89 TFEEPGIYLYVCVP----HEALG-MKGAVVV  114 (115)
T ss_pred             EecCCcEEEEEccC----CCCCC-CEEEEEE
Confidence               89999999993    66678 9887764

Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.

>TIGR02375 pseudoazurin pseudoazurin

Probab=95.31  E-value=0.086  Score=37.96  Aligned_cols=61  Identities=13%  Similarity=0.055  Sum_probs=43.3

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecC----c-ccCcc-----cCC---CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPN----L-WSYLR-----CDI---GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~----~-~~Y~~-----C~~---~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      -++++||++.|.....     .|+|..+++    . ..+..     -..   ++|.|-|.|.    .|=..| |+=.|.+
T Consensus        17 v~V~~GdTV~f~n~d~-----~Hnv~~~~~~~p~g~~~~~s~~g~~~~~tF~~~G~Y~Y~C~----pH~~~G-M~G~V~V   86 (116)
T TIGR02375        17 IRAAPGDTVTFVPTDK-----GHNVETIKGMIPEGAEAFKSKINEEYTVTVTEEGVYGVKCT----PHYGMG-MVALIQV   86 (116)
T ss_pred             EEECCCCEEEEEECCC-----CeeEEEccCCCcCCcccccCCCCCEEEEEeCCCEEEEEEcC----CCccCC-CEEEEEE
Confidence            4778999999999766     599887522    1 11221     000   8999999999    388999 9988887


Q ss_pred             cCCC
Q 041261          113 LLRR  116 (119)
Q Consensus       113 ~~~~  116 (119)
                      -..|
T Consensus        87 g~~~   90 (116)
T TIGR02375        87 GDPP   90 (116)
T ss_pred             CCCC
Confidence            5543

Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.

>TIGR03094 sulfo_cyanin sulfocyanin

Probab=94.22  E-value=0.24  Score=39.08  Aligned_cols=58  Identities=24%  Similarity=0.291  Sum_probs=40.9

Q ss_pred             eCcEEEEEeCCCCCCccccceEEecCcccCcccCC------------------------------------CCcceEEEc
Q 041261           50 VNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI------------------------------------GWQPYYFAC   93 (119)
Q Consensus        50 vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~------------------------------------~~G~~YFiC   93 (119)
                      .|=++.+++...+  .+.||...|++...+-.--.                                    ++|.||++|
T Consensus        91 aGw~V~V~f~N~e--~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~~~G~YwlvC  168 (195)
T TIGR03094        91 AGWNVYVTFTNYE--SLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDTSAGKYWLVC  168 (195)
T ss_pred             CCCEEEEEEEcCC--CCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccCCCeeEEEEc
Confidence            3767777665432  44899999877664431111                                    899999999


Q ss_pred             cCCCCCCCCCCcceEEEEe
Q 041261           94 DERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        94 g~~~g~HC~~G~mKl~V~p  112 (119)
                      +.+  +|-+.| |=..+.+
T Consensus       169 gip--GHAesG-Mw~~lIV  184 (195)
T TIGR03094       169 GIT--GHAESG-MWAVVIV  184 (195)
T ss_pred             ccC--ChhhcC-cEEEEEE
Confidence            999  999999 9655443

Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.

>TIGR03095 rusti_cyanin rusticyanin

Probab=87.61  E-value=1.5  Score=32.53  Aligned_cols=61  Identities=15%  Similarity=0.090  Sum_probs=39.1

Q ss_pred             CeEeCcEEEEEeCCCCCCccccceEEecCcccC------------ccc--------------CC-----CCcceEEEccC
Q 041261           47 PFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSY------------LRC--------------DI-----GWQPYYFACDE   95 (119)
Q Consensus        47 ~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y------------~~C--------------~~-----~~G~~YFiCg~   95 (119)
                      +++.||++.|....... ...|+..+......+            ..|              ++     ++|.|||.|..
T Consensus        55 ~v~~Gd~V~v~v~N~~~-~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~  133 (148)
T TIGR03095        55 VIPEGVTVHFTVINTDT-DSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTY  133 (148)
T ss_pred             EEcCCCEEEEEEEeCCC-CccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCC
Confidence            35779999998876522 235776664111111            112              11     78999999999


Q ss_pred             CCCCCCCCCcceEEEE
Q 041261           96 RGGLHWRDGRMKFMVL  111 (119)
Q Consensus        96 ~~g~HC~~G~mKl~V~  111 (119)
                      +  +|=+.| |.=.|.
T Consensus       134 p--gH~~~G-M~G~ii  146 (148)
T TIGR03095       134 P--GHAENG-MYGKIV  146 (148)
T ss_pred             h--hHHHCC-CEEEEE
Confidence            9  898889 765443

Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).

>TIGR02657 amicyanin amicyanin

Probab=84.12  E-value=5.7  Score=26.07  Aligned_cols=54  Identities=15%  Similarity=0.116  Sum_probs=35.1

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcc----cCcccCC-----------CCcceEEEccCCCCCCCCCCcceEEE
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----SYLRCDI-----------GWQPYYFACDERGGLHWRDGRMKFMV  110 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V  110 (119)
                      -++++||+|.|.-....    .|||... +..    ++..=..           +||.|-|.|...  -    . ||=.|
T Consensus        13 i~v~~GdtVt~~N~d~~----~Hnv~~~-~g~~~~~~~~~~~~~~g~~~~~tf~~~G~y~y~C~~H--p----~-M~G~v   80 (83)
T TIGR02657        13 LHVKVGDTVTWINREAM----PHNVHFV-AGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPH--P----F-MRGKV   80 (83)
T ss_pred             EEECCCCEEEEEECCCC----CccEEec-CCCCccccccccccCCCCEEEEECCCCEEEEEEcCCC--C----C-CeEEE
Confidence            36788999999876442    6999866 322    1211111           889999999976  2    3 66555


Q ss_pred             E
Q 041261          111 L  111 (119)
Q Consensus       111 ~  111 (119)
                      .
T Consensus        81 ~   81 (83)
T TIGR02657        81 V   81 (83)
T ss_pred             E
Confidence            4

Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	2e-07
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	3e-07
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	9e-07
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	2e-06
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	2e-06

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 30/107 (28%)

Query: 25  IVGSSDNWHFGFN---YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLR 81
           IVG +  W    +   YS WA     F V D L F +      V     + +    S+  
Sbjct: 7   IVGDNTGWSVPSSPNFYSQWA-AGKTFRVGDSLQFNFPANAHNV-----HEMETKQSFDA 60

Query: 82  CDIG------------------WQPYYFACDERGGLHWRDGRMKFMV 110
           C+                       +YF C      H  +G  K  +
Sbjct: 61  CNFVNSDNDVERTSPVIERLDELGMHYFVCTVGT--HCSNG-QKLSI 104

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96

 Score = 44.2 bits (104), Expect = 3e-07
 Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 28/102 (27%)

Query: 25  IVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI 84
           +VG S  W F  N   W      F   D+L+F Y+P    V      ++ N   +  C+ 
Sbjct: 4   VVGGSGGWTF--NTESWPKGK-RFRAGDILLFNYNPSMHNV------VVVNQGGFSTCNT 54

Query: 85  GWQ----------------PYYFACDERGGLHWRDGRMKFMV 110
                                YF C+  G  H + G MK  V
Sbjct: 55  PAGAKVYTSGRDQIKLPKGQSYFICNFPG--HCQSG-MKIAV 93

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116

 Score = 43.4 bits (102), Expect = 9e-07
 Identities = 20/106 (18%), Positives = 27/106 (25%), Gaps = 30/106 (28%)

Query: 25  IVGSSDNWHFGFN---YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLR 81
            VG    W    +   Y  WA     F V D L F +      V       +    ++  
Sbjct: 5   DVGGDMEWKRPSDPKFYITWA-TGKTFRVGDELEFDFAAGMHDV------AVVTKDAFDN 57

Query: 82  CDIGWQ-----------------PYYFACDERGGLHWRDGRMKFMV 110
           C                      P Y+ C      H R G  K  +
Sbjct: 58  CKKENPISHMTTPPVKIMLNTTGPQYYICTVGD--HCRVG-QKLSI 100

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 29/105 (27%)

Query: 25  IVGSSDNWHFG--FNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRC 82
            VG S  W     ++Y+ WA  N  F+V D L+F Y+     V    +        +  C
Sbjct: 6   KVGDSTGWTTLVPYDYAKWASSN-KFHVGDSLLFNYNNKFHNVLQVDQ------EQFKSC 58

Query: 83  DIGWQ-----------------PYYFACDERGGLHWRDGRMKFMV 110
           +                      +YF C   G  H + G  K  +
Sbjct: 59  NSSSPAASYTSGADSIPLKRPGTFYFLCGIPG--HCQLG-QKVEI 100

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 24/95 (25%), Positives = 27/95 (28%), Gaps = 29/95 (30%)

Query: 32  WHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDIGWQ---- 87
           W F  N    A +   F   DVLVFKY      V      +  N   Y  C         
Sbjct: 7   WSFNVN---GA-RGKSFRAGDVLVFKYIKGQHNV------VAVNGRGYASCSAPRGARTY 56

Query: 88  ------------PYYFACDERGGLHWRDGRMKFMV 110
                         YF C   G  H   G MK  +
Sbjct: 57  SSGQDRIKLTRGQNYFICSFPG--HCGGG-MKIAI 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	100.0
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	100.0
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	99.97
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	99.97
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	99.95
1qhq_A	140	Protein (auracyanin); electron transfer, cupredoxi	98.74
2cal_A	154	Rusticyanin; iron respiratory electron transport c	98.6
1bxv_A	91	Plastocyanin; copper protein, electron transfer; 1	98.43
2aan_A	139	Auracyanin A; cupredoxin fold, electron transport;	98.15
1kdj_A	102	Plastocyanin; electron transfer, photosystem, PAI-	97.75
1pmy_A	123	Pseudoazurin; electron transfer(cuproprotein); 1.5	97.73
1paz_A	123	Pseudoazurin precursor; electron transfer(cupropro	97.69
2gim_A	106	Plastocyanin; beta sheet, Cu, helix, electron tran	97.68
1b3i_A	97	PETE protein, protein (plastocyanin); electron tra	97.61
1iuz_A	98	Plastocyanin; electron transport; 1.60A {Ulva pert	97.58
3tu6_A	127	Pseudoazurin (blue copper protein); cupredoxins, b	97.52
1iko_P	178	Ephrin-B2; greek KEY, glycosylation, signaling pro	97.49
1plc_A	99	Plastocyanin; electron transport; 1.33A {Populus n	97.41
2plt_A	98	Plastocyanin; electron transport; 1.50A {Chlamydom	97.39
3erx_A	123	Pseudoazurin; copper protein, high-resolution, E t	97.32
1pcs_A	98	Plastocyanin; electron transport; 2.15A {Synechocy	97.28
1byp_A	99	Protein (plastocyanin); electron transfer, photosy	97.25
1shx_A	138	Ephrin-A5; ephrin signaling, hormone-growth factor	97.17
3ef4_A	124	Pseudoazurin, blue copper protein; electron transf	97.16
2wo3_B	157	Ephrin-A2; transferase-signaling protein complex,	97.05
2x11_B	177	Ephrin-A5; receptor-signaling protein complex, dev	97.01
2vsm_B	140	Ephrin-B2; developmental protein, henipavirus, neu	96.96
4hci_A	100	Cupredoxin 1; structural genomics, niaid, national	96.46
3d12_B	141	Ephrin-B3; beta propeller, protein-receptor comple	96.34
3czu_B	182	Ephrin-A1; ATP-binding, kinase, nucleotide-binding	96.22
3cvb_A	105	Plastocyanin; cupredoxin, SELF assembly, copper, e	96.01
2ov0_A	105	Amicyanin; beta-sandwich, electron transport; 0.75	95.55
3ay2_A	167	Lipid modified azurin protein; beta sandwich, bact	95.36
3hei_B	132	Ephrin-A1; EPH receptor tyrosine kinase, cell memb	94.91
1id2_A	106	Amicyanin; beta barrel, type-1 blue copper protein	94.91
1cuo_A	129	Protein (azurin ISO-2); beta barrel, periplasmic,	94.39
3c75_A	132	Amicyanin; copper proteins, electron transfer comp	93.78
1nwp_A	128	Azurin; electron transport, cupredoxin, electron t	93.75
2ccw_A	129	Azurin II, AZN-2; electron transport (cuproprotein	92.53
2ux6_A	122	Pseudoazurin; type-1 copper, metal-binding, redox	92.13
2iaa_C	128	Azurin; quinoprotein, tryptophan tryptophylquinone	90.97
1iby_A	112	Nitrosocyanin; RED copper, cupredoxin, beta hairpi	90.3
2cua_A	135	Protein (CUA); CUA center, electron transport; 1.6	89.23
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	81.57

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A

Probab=100.00  E-value=2.2e-35  Score=209.08  Aligned_cols=88  Identities=24%  Similarity=0.381  Sum_probs=80.9

Q ss_pred             CCcEEEecCCCCCCCC--CCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-------------
Q 041261           20 GPNKIIVGSSDNWHFG--FNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-------------   84 (119)
Q Consensus        20 ~a~~~~VGg~~gW~~~--~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-------------   84 (119)
                      +|++|+|||+.||+++  .+|++||+ +++|+|||+|+|+|.++     .|+|+|| ++++|+.|+.             
T Consensus         1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~-~~~F~vGD~LvF~y~~~-----~hsV~~V-~~~~y~~C~~~~p~~~~~~G~~~   73 (109)
T 1ws8_A            1 MATVHKVGDSTGWTTLVPYDYAKWAS-SNKFHVGDSLLFNYNNK-----FHNVLQV-DQEQFKSCNSSSPAASYTSGADS   73 (109)
T ss_dssp             CCCEEETTGGGCSCSSSCCCHHHHHH-TSCBCTTCEEEEECCTT-----TCCEEEE-CHHHHHHTCCSSCSEEECSSEEE
T ss_pred             CCcEEEeCCCCCccCCCCcChhHhhc-CCcCcCCCEEEEeecCC-----CceEEEE-ChHHCCcccCCCcccccCCCCEE
Confidence            4789999999999998  89999999 69999999999999988     7999999 9999999996             


Q ss_pred             ----CCcceEEEccCCCCCCCCCCcceEEEEecCCCC
Q 041261           85 ----GWQPYYFACDERGGLHWRDGRMKFMVLPLLRRW  117 (119)
Q Consensus        85 ----~~G~~YFiCg~~~g~HC~~G~mKl~V~p~~~~~  117 (119)
                          ++|++||||+++  +||+.| |||+|.+++.+.
T Consensus        74 v~L~~~G~~yFic~~~--gHC~~G-mKl~I~V~~~~s  107 (109)
T 1ws8_A           74 IPLKRPGTFYFLCGIP--GHCQLG-QKVEIKVDPGSS  107 (109)
T ss_dssp             EECCSSEEEEEECCST--TTTTTT-CEEEEEECC---
T ss_pred             EEECCCcCEEEECCCC--CcccCC-CEEEEEEcCCCC
Confidence                899999999999  999999 999999987653

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1

Probab=100.00  E-value=6.4e-34  Score=209.21  Aligned_cols=87  Identities=25%  Similarity=0.435  Sum_probs=81.3

Q ss_pred             CCcEEEecCCCCCCCC---CCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC------------
Q 041261           20 GPNKIIVGSSDNWHFG---FNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI------------   84 (119)
Q Consensus        20 ~a~~~~VGg~~gW~~~---~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~------------   84 (119)
                      +|++|+|||+.||+++   .+|++||+ +++|+|||+|+|+|.++     .|+|+||+++++|+.|+.            
T Consensus         2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~-~~~F~vGD~LvF~y~~~-----~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~   75 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSSPNFYSQWAA-GKTFRVGDSLQFNFPAN-----AHNVHEMETKQSFDACNFVNSDNDVERTSP   75 (138)
T ss_dssp             CCCEEETTGGGCSSCCSSTTHHHHHHH-TCCEETTCEEEECCCTT-----TCCCEEESCHHHHHHTCCTTSCCCCCCCSC
T ss_pred             CceEEEECCcCcCcCCCCccchhhhhc-CCcCcCCCEEEEeecCC-----CceEEEeCchhhcCccCCCCccccccCCCe
Confidence            5789999999999998   78999999 69999999999999987     699999999999999996            


Q ss_pred             ------CCcceEEEccCCCCCCCCCCcceEEEEecCC
Q 041261           85 ------GWQPYYFACDERGGLHWRDGRMKFMVLPLLR  115 (119)
Q Consensus        85 ------~~G~~YFiCg~~~g~HC~~G~mKl~V~p~~~  115 (119)
                            ++|++||||+++  +||+.| |||+|++++.
T Consensus        76 ~v~L~~~~G~~YFicg~~--gHC~~G-mKl~I~V~~~  109 (138)
T 1jer_A           76 VIERLDELGMHYFVCTVG--THCSNG-QKLSINVVAA  109 (138)
T ss_dssp             EEEECCSSEEEEEECCST--TTGGGT-CEEEEEEECC
T ss_pred             EEEeccCCcCEEEEcCCC--CccccC-CEEEEEEcCC
Confidence                  679999999999  999999 9999998764

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1

Probab=99.97  E-value=6e-33  Score=192.41  Aligned_cols=80  Identities=31%  Similarity=0.612  Sum_probs=75.1

Q ss_pred             cEEEecCCCCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC----------------C
Q 041261           22 NKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI----------------G   85 (119)
Q Consensus        22 ~~~~VGg~~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~----------------~   85 (119)
                      ++|+|||+.||++  +|++||+ +++|+|||+|+|+|.++     .|+|+|| ++++|+.|+.                +
T Consensus         1 ~~~~VG~~~GW~~--~y~~Wa~-~~~f~vGD~L~F~y~~~-----~hsV~~v-~~~~y~~C~~~~~~~~~~~G~~~v~L~   71 (96)
T 2cbp_A            1 AVYVVGGSGGWTF--NTESWPK-GKRFRAGDILLFNYNPS-----MHNVVVV-NQGGFSTCNTPAGAKVYTSGRDQIKLP   71 (96)
T ss_dssp             CEEETTGGGCSCS--SCTTTTT-TCCBCTTCEEEEECCTT-----TCCEEEE-CHHHHHHTCCCTTCEEECSSEEEEECC
T ss_pred             CEEEECCcCCCcc--Chhhhcc-CceEcCCCEEEEEecCC-----CCEEEEE-CHHHCCccCCCCCcccccCCCeEEEec
Confidence            4799999999997  6999998 69999999999999988     6999999 9999999997                6


Q ss_pred             CcceEEEccCCCCCCCCCCcceEEEEec
Q 041261           86 WQPYYFACDERGGLHWRDGRMKFMVLPL  113 (119)
Q Consensus        86 ~G~~YFiCg~~~g~HC~~G~mKl~V~p~  113 (119)
                      +|++||||+++  +||+.| |||+|.+|
T Consensus        72 ~g~~yFic~~~--~HC~~G-mkl~I~Vl   96 (96)
T 2cbp_A           72 KGQSYFICNFP--GHCQSG-MKIAVNAL   96 (96)
T ss_dssp             SEEEEEECCST--TTGGGT-CEEEEEEC
T ss_pred             CCCEEEEcCCC--CccccC-CEEEEEEC
Confidence            89999999999  999999 99999986

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A

Probab=99.97  E-value=1.5e-32  Score=196.50  Aligned_cols=84  Identities=24%  Similarity=0.373  Sum_probs=77.0

Q ss_pred             cEEEecCCCCCCCC---CCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC--------------
Q 041261           22 NKIIVGSSDNWHFG---FNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI--------------   84 (119)
Q Consensus        22 ~~~~VGg~~gW~~~---~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~--------------   84 (119)
                      ++|+|||+.||+++   .+|++||+ +++|+|||+|+|+|.++     .|+|+|| ++++|+.|+.              
T Consensus         2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~-~~~f~vGD~L~F~y~~~-----~HsV~~V-~~~~y~~C~~~~~~~~~~~G~~~v   74 (116)
T 1x9u_A            2 EDYDVGGDMEWKRPSDPKFYITWAT-GKTFRVGDELEFDFAAG-----MHDVAVV-TKDAFDNCKKENPISHMTTPPVKI   74 (116)
T ss_dssp             CEEETTGGGCSSCCSSTTHHHHHHT-TCCEETTCEEEECCCTT-----TCCEEEE-CHHHHHTTCCSSCSEEECSSSEEE
T ss_pred             eEEEECCcCcCcCCCCCcchhhccc-cccCcCCCEEEEEecCC-----CCeEEEE-ChhhcCccCCCCCccccCCCCeEE
Confidence            57999999999985   67999999 69999999999999987     6999999 9999999997              


Q ss_pred             ---CCcceEEEccCCCCCCCCCCcceEEE-EecCC
Q 041261           85 ---GWQPYYFACDERGGLHWRDGRMKFMV-LPLLR  115 (119)
Q Consensus        85 ---~~G~~YFiCg~~~g~HC~~G~mKl~V-~p~~~  115 (119)
                         ++|++||||+++  +||+.| |||+| .+++.
T Consensus        75 ~l~~~G~~yFic~~~--~HC~~G-mkl~In~V~~~  106 (116)
T 1x9u_A           75 MLNTTGPQYYICTVG--DHCRVG-QKLSINVVGAG  106 (116)
T ss_dssp             ECCSCEEEEEECCST--TTTTTT-CEEEEEEECC-
T ss_pred             EECCCCCEEEECCCC--CccccC-CEEEEEEECCC
Confidence               889999999999  999999 99999 76543

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1

Probab=99.95  E-value=6.4e-29  Score=170.82  Aligned_cols=75  Identities=29%  Similarity=0.416  Sum_probs=69.6

Q ss_pred             cEEEecCCCCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC----------------C
Q 041261           22 NKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI----------------G   85 (119)
Q Consensus        22 ~~~~VGg~~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~----------------~   85 (119)
                      ++|+|    ||+++   ++||+ +++|+|||+|+|+|.++     .|+|+|| ++++|+.|+.                .
T Consensus         1 ~~y~V----gW~~~---~~Wa~-~~~f~vGD~L~F~y~~~-----~hsV~~v-~~~~y~~C~~~~~~~~~~~G~~~v~L~   66 (91)
T 1f56_A            1 AVYNI----GWSFN---VNGAR-GKSFRAGDVLVFKYIKG-----QHNVVAV-NGRGYASCSAPRGARTYSSGQDRIKLT   66 (91)
T ss_dssp             CEEEE----ECSSS---CBSCT-TCCBCTTCEEEEECCBT-----TBCEEEE-CHHHHHTTCCCTTCEEECSSEEEEECC
T ss_pred             CEEEE----eCCCC---CcCcC-CccEeCCCEEEEEccCC-----CCeEEEE-CHHHcCCcCCCCCcccccCCCcEEEeC
Confidence            47999    89988   89998 69999999999999988     6999999 9999999997                6


Q ss_pred             CcceEEEccCCCCCCCCCCcceEEEEec
Q 041261           86 WQPYYFACDERGGLHWRDGRMKFMVLPL  113 (119)
Q Consensus        86 ~G~~YFiCg~~~g~HC~~G~mKl~V~p~  113 (119)
                      +|++||||+++  +||+.| |||+|.+.
T Consensus        67 ~g~~yFic~~~--~HC~~G-mkl~I~v~   91 (91)
T 1f56_A           67 RGQNYFICSFP--GHCGGG-MKIAINAK   91 (91)
T ss_dssp             SEEEEEECCST--TTTTTT-CEEEEEEC
T ss_pred             CCCeEEEcCCC--CccccC-CEEEEEEC
Confidence            79999999999  999999 99999874

>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A

Probab=98.74  E-value=3.9e-08  Score=69.41  Aligned_cols=87  Identities=16%  Similarity=0.213  Sum_probs=58.4

Q ss_pred             CCCCCcEEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcc----------------cC
Q 041261           17 DDDGPNKIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----------------SY   79 (119)
Q Consensus        17 ~~~~a~~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----------------~Y   79 (119)
                      ..+...++.|+-. .+|.+.++       .-++++||++.|.+....++...|++++.....                +|
T Consensus        12 ~~~~~~~v~V~~~~~~~~F~P~-------~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (140)
T 1qhq_A           12 NETPAQTVEVRAAPDALAFAQT-------SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALF   84 (140)
T ss_dssp             CSCCSEEEEEEBCSSSSSBSCS-------EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTT
T ss_pred             ccCCCEEEEEEEeCCCceEeCC-------eEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccc
Confidence            3455677888754 35776653       358899999998886510112379998872110                11


Q ss_pred             c------cc-------CC-----------CCcceEEEccCCCCCCCCCCcceEEEEec
Q 041261           80 L------RC-------DI-----------GWQPYYFACDERGGLHWRDGRMKFMVLPL  113 (119)
Q Consensus        80 ~------~C-------~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V~p~  113 (119)
                      .      ..       ..           ++|.|+|+|+++  +||..| ||..|.+.
T Consensus        85 ~~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~--~H~~~G-M~g~i~V~  139 (140)
T 1qhq_A           85 VPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFP--GHYLAG-MKGTLTVT  139 (140)
T ss_dssp             CCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCST--TTTTTT-CEEEEEEE
T ss_pred             cCccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCc--CHhhcC-CEEEEEEc
Confidence            0      00       01           799999999999  899999 99988764

>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A

Probab=98.60  E-value=5.7e-08  Score=70.96  Aligned_cols=63  Identities=16%  Similarity=0.113  Sum_probs=48.0

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC----------------------------CCcceEEEccCCC
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI----------------------------GWQPYYFACDERG   97 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~----------------------------~~G~~YFiCg~~~   97 (119)
                      -++++||+|+|.+....+ ...|++.++.....|..|..                            ++|.|||+|+.+ 
T Consensus        63 i~V~~GD~V~~~~tN~~~-~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~~pGtY~y~C~~~-  140 (154)
T 2cal_A           63 LEIPAGATVDVTFINTNK-GFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIP-  140 (154)
T ss_dssp             EEECTTCEEEEEEEECCT-TCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECCCSEEEEEECCST-
T ss_pred             EEEeCCCEEEEEEEcCCC-CeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEECCceEEEECCCC-
Confidence            366889999999976422 23799999854555544320                            689999999999 


Q ss_pred             CCCCCCCcceEEEEe
Q 041261           98 GLHWRDGRMKFMVLP  112 (119)
Q Consensus        98 g~HC~~G~mKl~V~p  112 (119)
                       +||+.| |+..|.+
T Consensus       141 -gH~~~G-M~G~IiV  153 (154)
T 2cal_A          141 -GMAATG-MFGKIVV  153 (154)
T ss_dssp             -TTGGGT-CEEEEEE
T ss_pred             -CHHHCC-CEEEEEE
Confidence             999999 9988865

>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A

Probab=98.43  E-value=3.1e-07  Score=59.50  Aligned_cols=73  Identities=15%  Similarity=0.178  Sum_probs=50.7

Q ss_pred             EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccC--cccCC-----------CCcc
Q 041261           23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSY--LRCDI-----------GWQP   88 (119)
Q Consensus        23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y--~~C~~-----------~~G~   88 (119)
                      +..+|++ .++.+.++       ..++++||+|.|.+....    .|+|... ....+  +.-..           +||.
T Consensus         4 ~v~~~~~~~~~~f~P~-------~i~v~~Gd~V~~~n~~~~----~H~v~~~-~~~~~~~~~~~~~~g~~~~~~f~~~G~   71 (91)
T 1bxv_A            4 AIKMGADNGMLAFEPS-------TIEIQAGDTVQWVNNKLA----PHNVVVE-GQPELSHKDLAFSPGETFEATFSEPGT   71 (91)
T ss_dssp             EEEESCTTSCSSEESS-------EEEECTTCEEEEEECSSC----CEEEEET-TCGGGCEEEEECSTTCEEEEECCSCEE
T ss_pred             EEEEecCCCccEEeCC-------EEEECCCCEEEEEECCCC----CcEEEEe-CCCccCcccceeCCCCEEEEEeCCCEE
Confidence            4556654 44665443       358899999999987532    6999876 43222  11111           8999


Q ss_pred             eEEEccCCCCCCCCCCcceEEEEe
Q 041261           89 YYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        89 ~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      |+|+|.    .||..| |+..|.+
T Consensus        72 y~~~C~----~H~~~g-M~g~i~V   90 (91)
T 1bxv_A           72 YTYYCE----PHRGAG-MVGKIVV   90 (91)
T ss_dssp             EEEECT----TTGGGT-CEEEEEE
T ss_pred             EEEEeC----CCccCC-CEEEEEE
Confidence            999999    499999 9998875

>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}

Probab=98.15  E-value=1.1e-05  Score=56.77  Aligned_cols=82  Identities=18%  Similarity=0.311  Sum_probs=54.0

Q ss_pred             CCCCcEEEecC-CCCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCcc-ccceEEecCc-----------------cc
Q 041261           18 DDGPNKIIVGS-SDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVF-PHSEYLLPNL-----------------WS   78 (119)
Q Consensus        18 ~~~a~~~~VGg-~~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~-~h~V~~V~~~-----------------~~   78 (119)
                      .++..++.||. ..++.+.++       .-++++||++.|.+....  .. .|++......                 .+
T Consensus        15 ~~~~~~V~v~~~~~~~~F~p~-------~i~v~~G~~V~~~~~N~~--~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~   85 (139)
T 2aan_A           15 GSGPVTIEIGSKGEELAFDKT-------ELTVSAGQTVTIRFKNNS--AVQQHNWILVKGGEAEAANIANAGLSAGPAAN   85 (139)
T ss_dssp             --CCEEEEEEBCTTSSSBSCS-------EEEECTTCEEEEEEECCC--SSCCBCCEEESSCHHHHHHHHHHHHHHCGGGT
T ss_pred             CCcCEEEEEEecCCccEEcCC-------eEEECCCCEEEEEEEeCC--CCCCeeEEEeccccccchhhhhhhhccccccc
Confidence            34444566753 235665543       357889999998876431  23 5999887321                 14


Q ss_pred             CcccC----------C-------------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           79 YLRCD----------I-------------GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        79 Y~~C~----------~-------------~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      |..|.          .             +||.|.|+|.++  +||. | |+-.|.+
T Consensus        86 ~~p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~--~H~~-G-M~G~i~V  138 (139)
T 2aan_A           86 YLPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVP--GHYP-L-MQGKLVV  138 (139)
T ss_dssp             TCCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCST--TTTT-T-SEEEEEE
T ss_pred             ccCcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCC--ChHH-c-CEEEEEE
Confidence            54442          1             699999999999  8999 9 9988765

>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A

Probab=97.75  E-value=6.3e-05  Score=49.68  Aligned_cols=73  Identities=18%  Similarity=0.103  Sum_probs=48.9

Q ss_pred             EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccC---------------cccCC--
Q 041261           23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSY---------------LRCDI--   84 (119)
Q Consensus        23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y---------------~~C~~--   84 (119)
                      +..+|++ .+..+.++       .-++++||++.|......    .|+|... +...+               +.=..  
T Consensus         2 ~V~~g~~~~~~~F~P~-------~i~v~~G~tV~~~n~~~~----~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p   69 (102)
T 1kdj_A            2 KVEVGDEVGNFKFYPD-------SITVSAGEAVEFTLVGET----GHNIVFD-IPAGAPGTVASELKAASMDENDLLSED   69 (102)
T ss_dssp             EEEESCTTCCCCEESS-------EEEECTTCCEEEEECSSS----CBCCEEC-CCTTCCHHHHHHHHHTSCCTTCCBBTT
T ss_pred             EEEEecCCCccEEeCC-------EEEECCCCEEEEEECCCC----CeEEEEe-CcccccccccchhhcccccccceecCC
Confidence            3556653 34554333       247888999999866532    6998876 43332               11001  


Q ss_pred             ---------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 ---------GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ---------~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                               ++|.|.|+|.    .||..| |+-.|.+
T Consensus        70 G~~~~~tf~~~G~y~y~C~----~H~~~g-M~G~i~V  101 (102)
T 1kdj_A           70 EPSFKAKVSTPGTYTFYCT----PHKSAN-MKGTLTV  101 (102)
T ss_dssp             BCEEEECCCSCEEEEEECS----TTGGGT-CEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEEeC----CCcccC-CeEEEEE
Confidence                     8999999999    499999 9988865

>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1

Probab=97.73  E-value=7.5e-05  Score=52.56  Aligned_cols=61  Identities=18%  Similarity=0.101  Sum_probs=44.5

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEec----Cc-ccCcccC-------C-CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLP----NL-WSYLRCD-------I-GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~----~~-~~Y~~C~-------~-~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      -++++||++.|.....     .|+|+...    +. ..|+.=-       + ++|.|.|.|.    .||..| |+-.|.+
T Consensus        23 i~V~~GdtV~f~n~~~-----~H~v~~~~~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~----~H~~~g-M~G~I~V   92 (123)
T 1pmy_A           23 VRLKPGDSIKFLPTDK-----GHNVETIKGMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA----PHYMMG-MVALVVV   92 (123)
T ss_dssp             EEECTTCEEEEECSSS-----SCCCEECTTSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS----TTTTTT-CEEEEEE
T ss_pred             EEECCCCEEEEEECCC-----CcEEEEecccCCCCccceecCCCCEEEEEeCCCeEEEEEeC----CccccC-CEEEEEE
Confidence            4778899999998865     69998762    11 1232100       0 8999999998    499999 9999987


Q ss_pred             cCCC
Q 041261          113 LLRR  116 (119)
Q Consensus       113 ~~~~  116 (119)
                      ...|
T Consensus        93 ~~~~   96 (123)
T 1pmy_A           93 GDKR   96 (123)
T ss_dssp             SSCC
T ss_pred             cCCC
Confidence            6544

>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*

Probab=97.69  E-value=8.1e-05  Score=52.39  Aligned_cols=61  Identities=13%  Similarity=0.037  Sum_probs=44.4

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEec----Cc-ccCcccC-------C-CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLP----NL-WSYLRCD-------I-GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~----~~-~~Y~~C~-------~-~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      -++++||++.|.....     .|+|...+    +. ..|+.=-       + ++|.|.|.|.    .||..| |+-.|.+
T Consensus        23 i~V~~GdtV~f~~~~~-----~H~v~~~~~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~----~H~~~g-M~G~I~V   92 (123)
T 1paz_A           23 IKANPGDTVTFIPVDK-----GHNVESIKDMIPEGAEKFKSKINENYVLTVTQPGAYLVKCT----PHYAMG-MIALIAV   92 (123)
T ss_dssp             EEECTTCEEEEEESSS-----SCCCEECTTCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT----TTGGGT-CEEEEEE
T ss_pred             EEECCCCEEEEEECCC-----CeEEEEecccCCCCccceecCCCCEEEEEeCCCEEEEEEeC----CcccCC-CEEEEEE
Confidence            5788899999999865     59998741    11 1232200       0 8999999997    499999 9999987


Q ss_pred             cCCC
Q 041261          113 LLRR  116 (119)
Q Consensus       113 ~~~~  116 (119)
                      -..|
T Consensus        93 ~~~~   96 (123)
T 1paz_A           93 GDSP   96 (123)
T ss_dssp             SSSC
T ss_pred             cCCC
Confidence            6533

>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A

Probab=97.68  E-value=0.00011  Score=48.76  Aligned_cols=73  Identities=18%  Similarity=0.170  Sum_probs=48.2

Q ss_pred             EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCccc------------CcccCC-----
Q 041261           23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWS------------YLRCDI-----   84 (119)
Q Consensus        23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~------------Y~~C~~-----   84 (119)
                      +..||.+ .++.+.++       .-++++||++.|......    .|+|... +...            ++.=..     
T Consensus         5 ~V~~~~~~~~~~F~P~-------~i~v~~Gd~V~~~n~~~~----~H~~~~~-~~~~~~~~g~~~~~~~~~~~~~~pG~~   72 (106)
T 2gim_A            5 TVKLGSDKGLLVFEPA-------KLTIKPGDTVEFLNNKVP----PHNVVFD-AALNPAKSADLAKSLSHKQLLMSPGQS   72 (106)
T ss_dssp             EEEESCTTCCSSEESS-------EEEECTTCEEEEEECSSS----CCCBEEC-SSSSTTCCHHHHHHHCBCSCCCSTTCE
T ss_pred             EEEEEecCCcceEcCC-------EEEECCCCEEEEEECCCC----CceEEEe-CCCCcccccccchhccccceeeCCCCE
Confidence            4556643 45665443       357888999999866432    6888865 3211            111001     


Q ss_pred             ---------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 ---------GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ---------~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                               +||.|+|.|.    .||..| |+-.|.+
T Consensus        73 ~~~~f~~~~~~G~y~y~C~----~H~~~G-M~G~i~V  104 (106)
T 2gim_A           73 TSTTFPADAPAGEYTFYCE----PHRGAG-MVGKITV  104 (106)
T ss_dssp             EEEECCTTCCSEEEEEECT----TTGGGT-CEEEEEE
T ss_pred             EEEEEecCCCCceEEEEeC----ChhhcC-cEEEEEE
Confidence                     6899999999    499999 9988875

>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*

Probab=97.61  E-value=0.00017  Score=47.09  Aligned_cols=57  Identities=19%  Similarity=0.229  Sum_probs=40.8

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCccc--------CcccCC-----------CCcceEEEccCCCCCCCCCCcc
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWS--------YLRCDI-----------GWQPYYFACDERGGLHWRDGRM  106 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~--------Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~m  106 (119)
                      -++++||++.|......    .|+|... +...        ++.=..           +||.|.|.|.    .||..| |
T Consensus        21 i~v~~G~~V~~~n~~~~----~H~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~tf~~~G~y~y~C~----~H~~~g-M   90 (97)
T 1b3i_A           21 LSISAGDTVEFVMNKVG----PHNVIFD-KVPAGESAPALSNTKLAIAPGSFYSVTLGTPGTYSFYCT----PHRGAG-M   90 (97)
T ss_dssp             EEECTTCEEEEEECSSC----CCCBEEE-ECCTTSCHHHHCBCCCCCSCSCCEEEECCSCSEEEEECS----STTTTT-C
T ss_pred             EEECCCCEEEEEECCCC----CeEEEEe-CCCCccccccccccceecCCCCEEEEEeCCCeEEEEEcc----ChhhcC-C
Confidence            47888999999976532    6998876 2210        111011           8999999999    499999 9


Q ss_pred             eEEEEe
Q 041261          107 KFMVLP  112 (119)
Q Consensus       107 Kl~V~p  112 (119)
                      +-.|.+
T Consensus        91 ~G~i~V   96 (97)
T 1b3i_A           91 VGTITV   96 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            988865

>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A

Probab=97.58  E-value=8.9e-05  Score=49.03  Aligned_cols=74  Identities=16%  Similarity=0.175  Sum_probs=49.1

Q ss_pred             EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCc--ccCcccC---------C------
Q 041261           23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNL--WSYLRCD---------I------   84 (119)
Q Consensus        23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~--~~Y~~C~---------~------   84 (119)
                      +..+|++ .+..+.++       .-++++||++.|.....    ..|+|......  +.++.+.         .      
T Consensus         3 ~V~m~~~~~~~~F~P~-------~i~v~~GdtV~~~n~~~----~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~   71 (98)
T 1iuz_A            3 IVKLGGDDGSLAFVPS-------KISVAAGEAIEFVNNAG----FPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVR   71 (98)
T ss_dssp             EEEESCTTSCCSEESS-------EEEECTTCEEEEEECSS----CCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred             EEEEecCCCCcEEeCC-------EEEECCCCEEEEEECCC----CCEEEEEeCCCCccccccccccccccccCCCCEEEE
Confidence            4455543 44655443       35788899999987653    27998876211  1233221         1      


Q ss_pred             ---CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 ---GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ---~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                         ++|.|.|.|.    -||..| |+-.|.+
T Consensus        72 tf~~~G~y~y~C~----~H~~~g-M~G~I~V   97 (98)
T 1iuz_A           72 KLSTPGVYGVYCE----PHAGAG-MKMTITV   97 (98)
T ss_dssp             ECCSCEEEEEECT----TTGGGT-CEEEEEE
T ss_pred             EcCCCEEEEEEch----hhccCC-CEEEEEE
Confidence               8999999998    399999 9988865

>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}

Probab=97.52  E-value=0.00016  Score=51.45  Aligned_cols=60  Identities=18%  Similarity=0.160  Sum_probs=44.5

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEe----cCcc-cCcccCC---------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLL----PNLW-SYLRCDI---------GWQPYYFACDERGGLHWRDGRMKFMVL  111 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V----~~~~-~Y~~C~~---------~~G~~YFiCg~~~g~HC~~G~mKl~V~  111 (119)
                      -++++||++.|.....     .|+|...    |+.. .|+. ..         +||.|+|.|.    .||..| |+-.|.
T Consensus        25 i~V~~GDtVtf~n~~~-----~H~v~~~~~~~P~g~~~f~s-~pGet~s~TF~~pG~y~y~C~----~H~~~G-M~G~I~   93 (127)
T 3tu6_A           25 IRAQPGDTVTFVAKDK-----GHNSALMKGGAPEGAETWKG-KINEEITVTLSKPGVYMYQCA----PHVGMG-MIGAIV   93 (127)
T ss_dssp             EEECTTCEEEEECSSS-----SCCCEECTTCSCTTCCCCBC-CTTCCCEEECCSCEEEEEECT----TTGGGT-CEEEEE
T ss_pred             EEECCCCEEEEEECCC-----CceEEEccCcCCCCccceec-CCCCEEEEEeCCCeEEEEEeC----CCCcCC-cEEEEE
Confidence            5788999999999865     5999875    1111 2221 11         9999999999    399999 999988


Q ss_pred             ecCCC
Q 041261          112 PLLRR  116 (119)
Q Consensus       112 p~~~~  116 (119)
                      +...|
T Consensus        94 V~~~~   98 (127)
T 3tu6_A           94 VGEPA   98 (127)
T ss_dssp             ESSCT
T ss_pred             ECcCC
Confidence            76544

>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5

Probab=97.49  E-value=4.9e-05  Score=57.71  Aligned_cols=67  Identities=16%  Similarity=0.130  Sum_probs=48.7

Q ss_pred             EeCcEEEEEeCCCCCC----ccccceEEecCcccCcccCC-----------------------------------CCc-c
Q 041261           49 YVNDVLVFKYDPPNDT----VFPHSEYLLPNLWSYLRCDI-----------------------------------GWQ-P   88 (119)
Q Consensus        49 ~vGD~LvF~Y~~~~~~----~~~h~V~~V~~~~~Y~~C~~-----------------------------------~~G-~   88 (119)
                      ++||.|-|--+.....    ...+.|++| ++++|+.|+.                                   ++| .
T Consensus        27 ~igD~LdIiCP~~~~~~~~~~E~~~LY~V-s~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~  105 (178)
T 1iko_P           27 QIGDKLDIICPKVDSKTVGQYEYYKVYMV-DKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD  105 (178)
T ss_dssp             CTTCEEEEECCCCCSSSCSCCCBEEEEEE-CHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEE
T ss_pred             cCCCEEEEECCCCCCCCCCCceEEEEEEE-CHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence            5599999965443221    356899999 9999999987                                   576 5


Q ss_pred             eEEEccCC---------CCCCCCCCcceEEEEecCCC
Q 041261           89 YYFACDER---------GGLHWRDGRMKFMVLPLLRR  116 (119)
Q Consensus        89 ~YFiCg~~---------~g~HC~~G~mKl~V~p~~~~  116 (119)
                      |||||.-.         .|+.|..=+|||.|.+...|
T Consensus       106 YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~  142 (178)
T 1iko_P          106 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDA  142 (178)
T ss_dssp             EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC-
T ss_pred             eEEEecCCcccccccccCCCccccceeEEEEEeecCC
Confidence            88999863         13689663499999876554

>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A

Probab=97.41  E-value=0.00034  Score=45.96  Aligned_cols=73  Identities=19%  Similarity=0.196  Sum_probs=48.5

Q ss_pred             EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcc---cCccc-----------CC---
Q 041261           23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW---SYLRC-----------DI---   84 (119)
Q Consensus        23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~---~Y~~C-----------~~---   84 (119)
                      +..+|++ .+..+.++       .-++++||++.|......    .|+|... +..   +.+.+           ..   
T Consensus         2 ~v~m~~~~~~~~F~P~-------~i~v~~G~tV~~~n~~~~----~H~v~~~-~~~~p~~~~~~~~~~~~~~~~~~~G~~   69 (99)
T 1plc_A            2 DVLLGADDGSLAFVPS-------EFSISPGEKIVFKNNAGF----PHNIVFD-EDSIPSGVDASKISMSEEDLLNAKGET   69 (99)
T ss_dssp             EEEESCTTCCSCEESS-------EEEECTTCEEEEEECSSC----CBCCEEC-TTSSCTTCCHHHHCCCTTCCBCSTTCE
T ss_pred             EEEEecCCCcceEeCC-------EEEECCCCEEEEEECCCC----ceEEEEe-CCCCcccccccccccccCccccCCCCE
Confidence            3456653 33554332       357889999999877542    6999876 321   11111           01   


Q ss_pred             ------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 ------GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ------~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                            ++|.|.|.|.    .||..| |+-.|.+
T Consensus        70 ~~~tf~~~G~y~~~C~----~H~~~g-M~G~i~V   98 (99)
T 1plc_A           70 FEVALSNKGEYSFYCS----PHQGAG-MVGKVTV   98 (99)
T ss_dssp             EEEECCSCEEEEEECG----GGTTTT-CEEEEEE
T ss_pred             EEEEECCCceEEEEcC----CCcccC-CEEEEEE
Confidence                  8999999999    399999 9988865

>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1

Probab=97.39  E-value=0.00017  Score=47.17  Aligned_cols=74  Identities=14%  Similarity=0.108  Sum_probs=48.8

Q ss_pred             cEEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCc---ccCccc-------CC------
Q 041261           22 NKIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNL---WSYLRC-------DI------   84 (119)
Q Consensus        22 ~~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~---~~Y~~C-------~~------   84 (119)
                      .+..+|++ .++.+.++       .-++++||++.|......    .|+|... +.   .+++.+       ..      
T Consensus         2 ~~V~m~~~~~~~~F~P~-------~i~v~~G~~V~~~n~~~~----~H~~~~~-~~~~p~~~~~~~~~~~~~~~~pG~~~   69 (98)
T 2plt_A            2 ATVKLGADSGALEFVPK-------TLTIKSGETVNFVNNAGF----PHNIVFD-EDAIPSGVNADAISRDDYLNAPGETY   69 (98)
T ss_dssp             EEEEESCTTCCSSEESS-------EEEECTTCEEEEEECSSC----CEEEEEC-GGGSCTTCCHHHHCEEEEECSTTCEE
T ss_pred             EEEEEecCCCCceEeCC-------EEEECCCCEEEEEECCCC----ceEEEEe-CCCCCCccccccccccceecCCCCEE
Confidence            34566643 34555433       247888999999877542    6998765 21   122211       00      


Q ss_pred             -----CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 -----GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 -----~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                           ++|.|.|.|.    .||..| |+-.|.+
T Consensus        70 ~~tf~~~G~y~y~C~----~H~~~g-M~G~i~V   97 (98)
T 2plt_A           70 SVKLTAAGEYGYYCE----PHQGAG-MVGKIIV   97 (98)
T ss_dssp             EEECCSCEEEEEECG----GGGGGT-CEEEEEE
T ss_pred             EEEeCCCeEEEEEcC----CccccC-CeEEEEE
Confidence                 8999999999    399999 9988865

>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A

Probab=97.32  E-value=0.00044  Score=48.76  Aligned_cols=60  Identities=22%  Similarity=0.134  Sum_probs=44.2

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEe----cCcc-cCcccCC---------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLL----PNLW-SYLRCDI---------GWQPYYFACDERGGLHWRDGRMKFMVL  111 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V----~~~~-~Y~~C~~---------~~G~~YFiCg~~~g~HC~~G~mKl~V~  111 (119)
                      -++++||++.|.....     .|+|...    |+.. .|+. ..         +||.|.|.|.    .||..| |+=.|.
T Consensus        23 i~V~~GdtV~f~~~~~-----~H~v~~~~~~~P~g~~~f~~-~pg~t~s~TF~~pG~y~y~C~----~H~~~G-M~G~I~   91 (123)
T 3erx_A           23 VRAEPGDVINFVPTDK-----SHNVEAIKEILPEGVESFKS-KINESYTLTVTEPGLYGVKCT----PHFGMG-MVGLVQ   91 (123)
T ss_dssp             EEECTTEEEEEEESST-----TCCCEECTTSSCTTCCCCBC-CTTCCEEEEECSCEEEEEECG----GGTTTT-CEEEEE
T ss_pred             EEECCCCEEEEEECCC-----CceEEEcCCcCCCCccceec-CCCCEEEEEeCCCeEEEEEeC----CCCcCC-cEEEEE
Confidence            5788999999999865     5999864    2211 2321 11         9999999999    499999 998888


Q ss_pred             ecCCC
Q 041261          112 PLLRR  116 (119)
Q Consensus       112 p~~~~  116 (119)
                      +-..|
T Consensus        92 V~~~~   96 (123)
T 3erx_A           92 VGDAP   96 (123)
T ss_dssp             ESSSC
T ss_pred             ECCCC
Confidence            76433

>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A

Probab=97.28  E-value=0.00034  Score=45.73  Aligned_cols=73  Identities=15%  Similarity=0.124  Sum_probs=47.8

Q ss_pred             EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCccc---------CcccCC--------
Q 041261           23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWS---------YLRCDI--------   84 (119)
Q Consensus        23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~---------Y~~C~~--------   84 (119)
                      +..+|.+ .+..+.++       .-++++||++.|......    .|+|... +...         ++.-..        
T Consensus         4 ~V~~~~~~~~~~F~P~-------~i~v~~G~~V~~~n~~~~----~H~~~~~-~~~~pg~~~~~~~~~~~~~~pG~~~~~   71 (98)
T 1pcs_A            4 TVKMGSDSGALVFEPS-------TVTIKAGEEVKWVNNKLS----PHNIVFD-ADGVPADTAAKLSHKGLLFAAGESFTS   71 (98)
T ss_dssp             EEEESCTTSCSSEESS-------EEEECTTCEEEEEECSSC----CEEEEEC-CSSSCHHHHHHHCEEEEECSTTCEEEE
T ss_pred             EEEEecCCCccEEeCC-------EEEECCCCEEEEEECCCC----CcEEEEe-CCCCCccccccccccccccCCCCEEEE
Confidence            4556543 44554433       247888999999966432    6998775 3210         111111        


Q ss_pred             ---CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 ---GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ---~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                         ++|.|.|.|.    .||..| |+-.|.+
T Consensus        72 tf~~~G~y~~~C~----~H~~~g-M~G~i~V   97 (98)
T 1pcs_A           72 TFTEPGTYTYYCE----PHRGAG-MVGKVVV   97 (98)
T ss_dssp             ECCSCEEEEEECG----GGTTTT-CEEEEEE
T ss_pred             EcCCCeEEEEEcC----CccccC-CeEEEEE
Confidence               8999999999    399999 9988865

>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A

Probab=97.25  E-value=0.00043  Score=45.34  Aligned_cols=73  Identities=21%  Similarity=0.221  Sum_probs=48.5

Q ss_pred             EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCc---ccCccc-----------CC---
Q 041261           23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNL---WSYLRC-----------DI---   84 (119)
Q Consensus        23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~---~~Y~~C-----------~~---   84 (119)
                      +..+|++ .+..+.++       .-++++||++.|......    .|+|... +.   ..++.+           ..   
T Consensus         2 ~V~~~~~~~~~~F~P~-------~i~v~~G~tV~~~n~~~~----~H~~~~~-~~~~p~g~~~~~~~~~~~~~~~~~G~~   69 (99)
T 1byp_A            2 EVLLGSSDGGLAFVPS-------DLSIASGEKITFKNNAGF----PHNDLFD-KKEVPAGVDVTKISMPEEDLLNAPGEE   69 (99)
T ss_dssp             EEEESCTTSCCSEESS-------EEEECTTEEEEEEECSSC----CBCCEEC-TTSSCTTCCHHHHSCCTTCCBCSTTCE
T ss_pred             EEEEecCCCcceEeCC-------EEEECCCCEEEEEECCCC----cceEEEe-CCCCccccccccccccccceeeCCCCE
Confidence            3456643 44554433       247888999999877542    6998876 32   112211           00   


Q ss_pred             ------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 ------GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ------~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                            ++|.|.|.|.    .||..| |+-.|.+
T Consensus        70 ~~~~f~~~G~y~~~C~----~H~~~g-M~G~i~V   98 (99)
T 1byp_A           70 YSVTLTEKGTYKFYCA----PHAGAG-MVGKVTV   98 (99)
T ss_dssp             EEEEECSCEEEEEECG----GGTTTT-CEEEEEE
T ss_pred             EEEEeCCCcEEEEEcC----CccccC-CEEEEEE
Confidence                  8999999999    399999 9988865

>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*

Probab=97.17  E-value=0.00051  Score=50.23  Aligned_cols=36  Identities=25%  Similarity=0.292  Sum_probs=27.7

Q ss_pred             eEeCcEEEEEeCCCCCC-----ccccceEEecCcccCcccCC
Q 041261           48 FYVNDVLVFKYDPPNDT-----VFPHSEYLLPNLWSYLRCDI   84 (119)
Q Consensus        48 F~vGD~LvF~Y~~~~~~-----~~~h~V~~V~~~~~Y~~C~~   84 (119)
                      +++||.|-+--+...++     ...+.+++| ++++|++|+.
T Consensus        25 V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~   65 (138)
T 1shx_A           25 VCINDYLDVFCPHYEDSVPEDKTERYVLYMV-NFDGYSACDH   65 (138)
T ss_dssp             ECTTCEEEEECCCCCTTCCSTTCCCEEEEEE-CHHHHHTTCS
T ss_pred             ecCCCEEEEECCCCCCCCCCCCceEEEEEEE-CHHHhccccC
Confidence            56799999865544332     357789999 9999999987

>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0

Probab=97.16  E-value=0.00066  Score=48.16  Aligned_cols=58  Identities=16%  Similarity=0.076  Sum_probs=42.4

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCc---c---cCccc--CC------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNL---W---SYLRC--DI------GWQPYYFACDERGGLHWRDGRMKFMVL  111 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~---~---~Y~~C--~~------~~G~~YFiCg~~~g~HC~~G~mKl~V~  111 (119)
                      -++++||++.|.....     .|+|... +.   .   .+..=  ..      ++|.|.|.|.    .||..| |+=.|.
T Consensus        24 i~V~~GDTV~f~n~~~-----~Hnv~~~-~~~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~----~H~~~G-M~G~I~   92 (124)
T 3ef4_A           24 VKVEAGDTVKFVPTDK-----SHNAESV-REVWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCA----PHYGMG-MVVLVQ   92 (124)
T ss_dssp             EEECTTCEEEEECSSS-----SCCCEEC-TTTSCTTSCCCBCCTTCCEEEECCSSEEEEEECT----TTGGGT-CEEEEE
T ss_pred             EEECCCCEEEEEECCC-----CccEEEe-CCcCCCCccccccCCCCEEEEEeCCCeEEEEEcC----CCCcCC-CEEEEE
Confidence            5788999999998864     6999886 22   1   11110  00      9999999997    499999 988887


Q ss_pred             ecC
Q 041261          112 PLL  114 (119)
Q Consensus       112 p~~  114 (119)
                      +-.
T Consensus        93 V~~   95 (124)
T 3ef4_A           93 VGK   95 (124)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            653

>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}

Probab=97.05  E-value=0.00084  Score=50.04  Aligned_cols=65  Identities=20%  Similarity=0.157  Sum_probs=45.4

Q ss_pred             eEeCcEEEEEeCCCCCC------ccccceEEecCcccCcccCC-------------------------------------
Q 041261           48 FYVNDVLVFKYDPPNDT------VFPHSEYLLPNLWSYLRCDI-------------------------------------   84 (119)
Q Consensus        48 F~vGD~LvF~Y~~~~~~------~~~h~V~~V~~~~~Y~~C~~-------------------------------------   84 (119)
                      +++||.|-+--+.....      .....+++| ++++|++|+.                                     
T Consensus        34 V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~E  112 (157)
T 2wo3_B           34 VSINDYLDIYCPHYGAPLPPAERMEHYVLYMV-NGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGFE  112 (157)
T ss_dssp             ECTTCEEEEECCCCCSSCCCGGGSCCEEEEEE-CHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSCC
T ss_pred             eccCCEEEEECCCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCee
Confidence            56799999864433221      345678999 9999999987                                     


Q ss_pred             -CCcc-eEEEccCC---CCCCCCCCcceEEEEecCC
Q 041261           85 -GWQP-YYFACDER---GGLHWRDGRMKFMVLPLLR  115 (119)
Q Consensus        85 -~~G~-~YFiCg~~---~g~HC~~G~mKl~V~p~~~  115 (119)
                       +||. ||||+.-.   .|+-|.  +|||.|.|.+.
T Consensus       113 F~pG~~YY~ISTS~g~~~gg~C~--rlkV~V~~~~~  146 (157)
T 2wo3_B          113 FRPGHEYYYISATPPNAVDRPCL--RLKVYVRPTQE  146 (157)
T ss_dssp             CCTTCEEEEEEECTTCSCCTTCC--EEEEEECCCC-
T ss_pred             eeCCCeEEEEEecCCCCCCCcce--eEEEEEEcCCC
Confidence             6666 77888542   235676  48888887764

>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}

Probab=97.01  E-value=0.0013  Score=49.93  Aligned_cols=36  Identities=25%  Similarity=0.292  Sum_probs=27.8

Q ss_pred             eEeCcEEEEEeCCCCCC-----ccccceEEecCcccCcccCC
Q 041261           48 FYVNDVLVFKYDPPNDT-----VFPHSEYLLPNLWSYLRCDI   84 (119)
Q Consensus        48 F~vGD~LvF~Y~~~~~~-----~~~h~V~~V~~~~~Y~~C~~   84 (119)
                      +++||.|-+--+...++     ...+.+++| ++++|++|+.
T Consensus        54 V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~V-s~e~y~~C~~   94 (177)
T 2x11_B           54 VCINDYLDVFCPHYEDSVPEDKTERYVLYMV-NFDGYSACDH   94 (177)
T ss_dssp             ECTTCEEEEECCCCCSSSCSSSCCCEEEEEE-CHHHHHHTCC
T ss_pred             ecCCCEEEEECCCCCCCCCCCCceEEEEEEE-CHHHhccccC
Confidence            56799999865544332     357889999 9999999987

>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E

Probab=96.96  E-value=0.00042  Score=50.68  Aligned_cols=64  Identities=17%  Similarity=0.149  Sum_probs=45.2

Q ss_pred             EeCcEEEEEeCCCCCC----ccccceEEecCcccCcccCC-----------------------------------CCcc-
Q 041261           49 YVNDVLVFKYDPPNDT----VFPHSEYLLPNLWSYLRCDI-----------------------------------GWQP-   88 (119)
Q Consensus        49 ~vGD~LvF~Y~~~~~~----~~~h~V~~V~~~~~Y~~C~~-----------------------------------~~G~-   88 (119)
                      ++||.|-+--+.....    ...+.+++| ++++|++|+.                                   ++|. 
T Consensus        26 ~i~D~ldIiCP~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~~  104 (140)
T 2vsm_B           26 QIGDKLDIICPKVDSKTVGQYEYYKVYMV-DKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKD  104 (140)
T ss_dssp             CTTCEEEEEECCCC---CCCCCBEEEEEE-CHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTEE
T ss_pred             cCCCEEEEECCCCCCCCCCCceEEEEEEE-CHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence            5689999976544322    346889999 9999999987                                   6665 


Q ss_pred             eEEEccCC---------CCCCCCCCcceEEEEec
Q 041261           89 YYFACDER---------GGLHWRDGRMKFMVLPL  113 (119)
Q Consensus        89 ~YFiCg~~---------~g~HC~~G~mKl~V~p~  113 (119)
                      ||||+.-.         .||-|..=+|||.|.+-
T Consensus       105 YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~  138 (140)
T 2vsm_B          105 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG  138 (140)
T ss_dssp             EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEET
T ss_pred             eEEEecCCCCccccccccCCccccceEEEEEEec
Confidence            66777643         13468654599998764

>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A

Probab=96.46  E-value=0.0023  Score=42.29  Aligned_cols=59  Identities=15%  Similarity=0.162  Sum_probs=38.2

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-----------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-----------GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      -++++||++.|.+... |.+ .|++..- +...-..-..           +||.|.|.|.    .||..| |+=.|.+
T Consensus        30 i~v~~G~tV~~~~~n~-d~~-~H~~~~~-~~~~~~~~~pg~~~~~~~t~~~~G~Y~y~C~----~H~~~g-M~G~i~V   99 (100)
T 4hci_A           30 ITIPINESTTLLLKNK-GKS-EHTFTIK-KLGIDVVVESGKEKNITVKPKSAGTYELICR----YHLLKG-MEGKVIV   99 (100)
T ss_dssp             EEECTTSCEEEEEEEC-SSS-CEEEEEG-GGTEEEEECTTCEEEEEECCCSCEEEEEECT----TTGGGT-CEEEEEE
T ss_pred             EEECCCCEEEEEEEcC-CCc-eEEEEEe-cCCcceeecCCcceeEEEecccCceEEEECc----cccCCC-CEEEEEE
Confidence            5788999999987532 222 5776543 2111000000           8999999996    599999 9877764

>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}

Probab=96.34  E-value=0.0033  Score=46.01  Aligned_cols=65  Identities=18%  Similarity=0.121  Sum_probs=46.2

Q ss_pred             CeEeCcEEEEEeCCCCCC-------ccccceEEecCcccCcccCC-----------------------------------
Q 041261           47 PFYVNDVLVFKYDPPNDT-------VFPHSEYLLPNLWSYLRCDI-----------------------------------   84 (119)
Q Consensus        47 ~F~vGD~LvF~Y~~~~~~-------~~~h~V~~V~~~~~Y~~C~~-----------------------------------   84 (119)
                      .+++||.|-+--+...+.       ...+.+++| ++++|++|+.                                   
T Consensus        23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF  101 (141)
T 3d12_B           23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLV-EGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF  101 (141)
T ss_dssp             CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEE-CSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred             EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence            346689999865544321       367889999 9999999997                                   


Q ss_pred             CCcc-eEEEccCCC---------CCCCCCCcceEEEEe
Q 041261           85 GWQP-YYFACDERG---------GLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ~~G~-~YFiCg~~~---------g~HC~~G~mKl~V~p  112 (119)
                      +||. ||||+.-..         ||-|..=+|||.|.+
T Consensus       102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V  139 (141)
T 3d12_B          102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRV  139 (141)
T ss_dssp             CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEEC
T ss_pred             eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEe
Confidence            7766 667776531         346865349999875

>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*

Probab=96.22  E-value=0.0049  Score=46.93  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=26.4

Q ss_pred             eEeCcEEEEEeCCCCCC------ccccceEEecCcccCcccCC
Q 041261           48 FYVNDVLVFKYDPPNDT------VFPHSEYLLPNLWSYLRCDI   84 (119)
Q Consensus        48 F~vGD~LvF~Y~~~~~~------~~~h~V~~V~~~~~Y~~C~~   84 (119)
                      +++||.|-+--+.....      ...+.+++| ++++|++|+.
T Consensus        52 V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~e~y~sC~~   93 (182)
T 3czu_B           52 VQLNDYVDIICPHYEDHSVADAAMEQYILYLV-EHEEYQLCQP   93 (182)
T ss_dssp             ECTTCEEEEECCCCC--CCCGGGSCCEEEEEE-CHHHHHHTCC
T ss_pred             eccCCEEEEECCCCCCCCCCCCCceEEEEEEE-CHHHhhhccC
Confidence            46799999865443221      356789999 9999999986

>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A

Probab=96.01  E-value=0.0084  Score=39.10  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=45.8

Q ss_pred             EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCccc------------CcccCC-----
Q 041261           23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWS------------YLRCDI-----   84 (119)
Q Consensus        23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~------------Y~~C~~-----   84 (119)
                      +..+|.+ .+..+.+.       .-++++||++.|......    .|+|..- ...-            .+.+..     
T Consensus         4 ~V~~~~~~~~~~f~p~-------~i~v~~Gd~V~~~N~~~~----~H~v~~~-~~~~~~~~g~~~~~~~~~~~~i~pG~~   71 (105)
T 3cvb_A            4 TVKMGADSGLFQFEPA-------NVTVHPGDTVKWVNNKLP----PHNILFD-DKQVPGASKELADKLSHSQLMFSPGES   71 (105)
T ss_dssp             EEEESCTTCCSCEESS-------EEEECTTEEEEEEECSSC----CEEEEEC-TTSSGGGCHHHHHHHCEEEEECSTTCE
T ss_pred             EEEEeecCCccEEeCC-------EEEEcCCCEEEEEECCCC----CCeEEEe-CCCCCcccccccccccccccccCCCCe
Confidence            3456543 44554432       247788999999865432    5777654 2110            122322     


Q ss_pred             ---------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 ---------GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ---------~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                               ++|.++|.|. +   |+..| |+-.|.+
T Consensus        72 ~~~~f~~~~~~G~y~y~C~-~---H~~~G-M~G~i~V  103 (105)
T 3cvb_A           72 YEITFSSDFPAGTYTYYCA-P---HRGAG-MVGKITV  103 (105)
T ss_dssp             EEEEECTTSCSEEEEEECT-T---TGGGT-CEEEEEE
T ss_pred             EEEEEecCCCCeeEEEEeC-C---chhcC-CEEEEEE
Confidence                     6899999999 3   99999 9887765

>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...

Probab=95.55  E-value=0.029  Score=37.28  Aligned_cols=72  Identities=14%  Similarity=0.132  Sum_probs=46.2

Q ss_pred             CcEEEecCCCCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcc----cCcccCC-----------C
Q 041261           21 PNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----SYLRCDI-----------G   85 (119)
Q Consensus        21 a~~~~VGg~~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----~Y~~C~~-----------~   85 (119)
                      +.++.|-- .+|.+.+.       .-++++||++.|.....    ..|+|... +..    .++....           +
T Consensus        18 a~~~~V~~-~~~~F~P~-------~i~v~~Gd~V~~~N~d~----~~H~v~~~-~~~~g~~~~~~~~~~pG~~~~~tf~~   84 (105)
T 2ov0_A           18 DGAIVVDI-AKMKYETP-------ELHVKVGDTVTWINREA----MPHNVHFV-AGVLGEAALKGPMMKKEQAYSLTFTE   84 (105)
T ss_dssp             TTCEEEEE-ETTEESSS-------EEEECTTCEEEEEECSS----SCBCCEEC-TTTSSSSCEECCCBCTTEEEEEEECS
T ss_pred             CcCEEEEE-eecEEcCC-------EEEECCCCEEEEEECCC----CCEEEEEc-CCCCCcccccccccCCCCEEEEEeCC
Confidence            45555532 34554432       34778899999985543    26998765 322    1555533           8


Q ss_pred             CcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           86 WQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        86 ~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      +|.|.|.|...    -  | |+-.|.+
T Consensus        85 ~G~y~y~C~~H----~--g-M~G~i~V  104 (105)
T 2ov0_A           85 AGTYDYHCTPH----P--F-MRGKVVV  104 (105)
T ss_dssp             CEEEEEECSSC----T--T-CEEEEEE
T ss_pred             CEEEEEEeCCC----C--C-CEEEEEE
Confidence            99999999864    3  7 8877754

>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}

Probab=95.36  E-value=0.035  Score=41.13  Aligned_cols=24  Identities=29%  Similarity=0.090  Sum_probs=20.3

Q ss_pred             CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      ++|.|.|+|..+  +|=+ | ||=.|.+
T Consensus       142 kpG~Y~f~Ct~P--gH~~-g-M~G~i~V  165 (167)
T 3ay2_A          142 ADGDYKFACTFP--GHGA-L-MNGKVTL  165 (167)
T ss_dssp             TTSCEEEECCST--TGGG-T-SEEEEEE
T ss_pred             CCcEEEEEcCCC--Cchh-c-CEEEEEE
Confidence            489999999999  8888 8 8877765

>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0

Probab=94.91  E-value=0.033  Score=40.30  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=26.9

Q ss_pred             eEeCcEEEEEeCCCCCC------ccccceEEecCcccCcccCC
Q 041261           48 FYVNDVLVFKYDPPNDT------VFPHSEYLLPNLWSYLRCDI   84 (119)
Q Consensus        48 F~vGD~LvF~Y~~~~~~------~~~h~V~~V~~~~~Y~~C~~   84 (119)
                      +++||.|-+--+...+.      ...+.+++| ++++|++|+.
T Consensus        24 V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~~~y~~C~~   65 (132)
T 3hei_B           24 VQLNDYVDIICPHYEDHSVADAAMEQYILYLV-EHEEYQLCQP   65 (132)
T ss_dssp             ECTTCEEEEECCCCCTTSSCGGGCCCEEEEEE-CHHHHHHTCC
T ss_pred             eCCCCeEEEECCCCCCCCCCCCCccEEEEEEe-CHHHhccccC
Confidence            36699998855443221      356789999 9999999997

>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1

Probab=94.91  E-value=0.06  Score=35.93  Aligned_cols=55  Identities=13%  Similarity=0.134  Sum_probs=38.0

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcc----cCcccCC-----------CCcceEEEccCCCCCCCCCCcceEEE
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----SYLRCDI-----------GWQPYYFACDERGGLHWRDGRMKFMV  110 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V  110 (119)
                      -++++||++.|.....    ..|+|... +..    .|+.=..           ++|.|.|.|..    |.  | |+-.|
T Consensus        36 i~V~~G~tV~~~N~d~----~~H~v~~~-~~~~~~~~~~s~~l~~g~~~~~tf~~~G~y~~~C~~----H~--~-M~G~I  103 (106)
T 1id2_A           36 VTIKAGETVYWVNGEV----MPHNVAFK-KGIVGEDAFRGEMMTKDQAYAITFNEAGSYDYFCTP----HP--F-MRGKV  103 (106)
T ss_dssp             EEECTTCEEEEEECSS----SCBCCEEC-TTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSS----CT--T-CEEEE
T ss_pred             EEECCCCEEEEEECCC----CcEEEEEe-CCCCCcccccccccCCCCEEEEEeCCCEEEEEEeCC----CC--C-CEEEE
Confidence            4778899999985543    26998765 322    1332211           89999999985    65  8 98877


Q ss_pred             Ee
Q 041261          111 LP  112 (119)
Q Consensus       111 ~p  112 (119)
                      .+
T Consensus       104 ~V  105 (106)
T 1id2_A          104 IV  105 (106)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A

Probab=94.39  E-value=0.18  Score=35.50  Aligned_cols=24  Identities=17%  Similarity=0.181  Sum_probs=19.9

Q ss_pred             CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      ++|.|.|+|+.+  +|=+ | ||=.|.+
T Consensus       104 ~~G~Y~f~C~~p--gH~~-~-M~G~i~V  127 (129)
T 1cuo_A          104 KDEAYTYFCSYP--GHFS-M-MRGTLKL  127 (129)
T ss_dssp             TTSCEEEECCST--TCTT-T-SEEEEEE
T ss_pred             CCceEEEEeCCC--CchH-c-CEEEEEE
Confidence            379999999999  8888 8 8866654

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=93.78  E-value=0.14  Score=35.71  Aligned_cols=55  Identities=13%  Similarity=0.134  Sum_probs=38.0

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcc----cCcccCC-----------CCcceEEEccCCCCCCCCCCcceEEE
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----SYLRCDI-----------GWQPYYFACDERGGLHWRDGRMKFMV  110 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V  110 (119)
                      -++++||++.|.....    ..|+|... +..    .|+.=..           ++|.|.|.|..    |.  | |+-.|
T Consensus        62 i~V~~GdtV~~~N~d~----~~H~v~~~-~~~~g~~~~~s~~l~pG~t~~~tF~~~G~y~y~C~~----H~--g-M~G~I  129 (132)
T 3c75_A           62 VTIKAGETVYWVNGEV----MPHNVAFK-KGIVGEDAFRGEMMTKDQAYAITFNEAGSYDYFCTP----HP--F-MRGKV  129 (132)
T ss_dssp             EEECTTCEEEEEECSS----SCBCCEEC-TTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSS----CT--T-CEEEE
T ss_pred             EEECCCCEEEEEECCC----CceEEEEe-CCCCCcccccccccCCCCEEEEEcCCCEEEEEEeCC----Cc--C-CEEEE
Confidence            5778899999985543    26998875 322    2332111           89999999985    55  8 98877


Q ss_pred             Ee
Q 041261          111 LP  112 (119)
Q Consensus       111 ~p  112 (119)
                      .+
T Consensus       130 ~V  131 (132)
T 3c75_A          130 IV  131 (132)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A

Probab=93.75  E-value=0.17  Score=35.62  Aligned_cols=23  Identities=30%  Similarity=0.121  Sum_probs=19.1

Q ss_pred             Ccc-eEEEccCCCCCCCCCCcceEEEEe
Q 041261           86 WQP-YYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        86 ~G~-~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      +|. |.|+|+++  +|=+ | ||=.|.+
T Consensus       104 ~G~~Y~f~C~~P--gH~~-g-M~G~i~V  127 (128)
T 1nwp_A          104 AGEKYGFFCSFP--GHIS-M-MKGTVTL  127 (128)
T ss_dssp             TTSCEEEECCST--TCGG-G-SEEEEEE
T ss_pred             CCceEEEEECCC--ChhH-C-CEEEEEE
Confidence            676 99999999  8988 8 9877654

>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A

Probab=92.53  E-value=0.59  Score=32.74  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=18.5

Q ss_pred             Ccc-eEEEccCCCCCCCCCCcceEEEEe
Q 041261           86 WQP-YYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        86 ~G~-~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      +|. |.|+|..+  +|=+ | ||=.|.+
T Consensus       104 ~G~~Y~f~C~~p--gH~~-g-M~G~i~V  127 (129)
T 2ccw_A          104 AGENYAYFCSFP--GHWA-M-MKGTLKL  127 (129)
T ss_dssp             TTCCEEEECCST--TGGG-T-SEEEEEE
T ss_pred             CCceEEEEeCCC--ChhH-c-CEEEEEE
Confidence            555 99999999  8888 8 8876654

>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A

Probab=92.13  E-value=0.25  Score=34.17  Aligned_cols=59  Identities=14%  Similarity=-0.017  Sum_probs=39.5

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEec----Ccc-cCcc-----cC--C-CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLP----NLW-SYLR-----CD--I-GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~----~~~-~Y~~-----C~--~-~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      -++++||++.|.....     .|+|....    +.. .|+.     -.  + ++|.|.|.|..    |..   |+-.|.+
T Consensus        23 i~V~~GdtV~f~n~d~-----~H~v~~~~~~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~----H~~---M~G~I~V   90 (122)
T 2ux6_A           23 LKVAPGDTVTFIPTDK-----GHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP----HPF---MVGVVQV   90 (122)
T ss_dssp             EEECTTEEEEEEESSS-----SCCCEECTTCSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT----EEE---EEEEEEE
T ss_pred             EEECCCCEEEEEECCC-----CcEEEEcccccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC----Ccc---CEEEEEE
Confidence            4678899999998755     59998752    211 2211     00  0 89999999985    564   7777776


Q ss_pred             cCCC
Q 041261          113 LLRR  116 (119)
Q Consensus       113 ~~~~  116 (119)
                      ...|
T Consensus        91 ~~~p   94 (122)
T 2ux6_A           91 GDAP   94 (122)
T ss_dssp             SSSC
T ss_pred             eCCC
Confidence            6544

>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*

Probab=90.97  E-value=1.1  Score=31.42  Aligned_cols=24  Identities=29%  Similarity=0.299  Sum_probs=19.4

Q ss_pred             CCcc-eEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 GWQP-YYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ~~G~-~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      ++|. |.|+|+++  +|=+ | ||=.|.+
T Consensus       102 ~~G~~Y~f~C~~P--gH~~-g-M~G~i~V  126 (128)
T 2iaa_C          102 KEGEDYAFFCSFP--GHWS-I-MKGTIEL  126 (128)
T ss_dssp             CTTCCEEEECCST--TCTT-T-SEEEEEE
T ss_pred             CCCceEEEEECCC--ChhH-C-CEEEEEE
Confidence            3685 99999999  8988 8 8876654

>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A

Probab=90.30  E-value=0.35  Score=31.95  Aligned_cols=58  Identities=7%  Similarity=-0.046  Sum_probs=36.9

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-------------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-------------GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-------------~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      -++++||.+.|.+.+. +.+ .|++..- +...  .+..             +||.|+|.|..    ||..+.|+-.|.+
T Consensus        40 i~v~~G~~V~~~~~n~-d~~-~H~~~i~-~~~~--~~~i~pG~~~~~~f~~~~~G~y~~~C~~----~~~~~~M~g~i~V  110 (112)
T 1iby_A           40 LVVKKGDAVKVVVENK-SPI-SEGFSID-AFGV--QEVIKAGETKTISFTADKAGAFTIWCQL----HPKNIHLPGTLNV  110 (112)
T ss_dssp             EEEETTCEEEEEEEEC-SSS-CEEEEEG-GGTE--EEEECTTCEEEEEEECCSCEEEEEBCSS----SCTTTBCCEEEEE
T ss_pred             EEEeCCCEEEEEEEEC-CCC-eEEEEEc-CCCc--eeEeCCCCEEEEEEECCCCEEEEEECCC----CCchHHCEEEEEE
Confidence            4678899999987654 222 5886532 2211  1221             89999999996    5754337776654

>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*

Probab=89.23  E-value=0.72  Score=32.48  Aligned_cols=58  Identities=17%  Similarity=0.142  Sum_probs=37.9

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcccCc-cc-----C-----C-CCcceEEEccCCCCCCCC---CCcceEEE
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYL-RC-----D-----I-GWQPYYFACDERGGLHWR---DGRMKFMV  110 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~-~C-----~-----~-~~G~~YFiCg~~~g~HC~---~G~mKl~V  110 (119)
                      -.+.+||.+.|...+. | + .|+... ++.. .+ ..     +     + ++|.|+|.|..    +|-   .+ |+..|
T Consensus        62 l~Vp~G~~V~~~vts~-D-V-~Hsf~i-p~~~-~k~d~~PG~~~~~~~~~~~~G~y~~~C~e----~CG~~H~~-M~g~v  131 (135)
T 2cua_A           62 IEVPQGAEIVFKITSP-D-V-IHGFHV-EGTN-INVEVLPGEVSTVRYTFKRPGEYRIICNQ----YCGLGHQN-MFGTI  131 (135)
T ss_dssp             EEEETTSEEEEEEEBS-S-S-CEEEEE-TTSS-CEEEECBTBCEEEEEECCSCEEEEEECCS----CCSTTSTT-CEEEE
T ss_pred             EEEcCCCEEEEEEEeC-C-c-cceEEe-cCCC-ceeEeCCCCcEEEEEEcCCCEEEEEECcc----cCCCCcCC-CEEEE
Confidence            4778899999998754 3 2 587643 2321 10 00     0     0 99999999986    354   45 99888


Q ss_pred             Eec
Q 041261          111 LPL  113 (119)
Q Consensus       111 ~p~  113 (119)
                      .+.
T Consensus       132 ~V~  134 (135)
T 2cua_A          132 VVK  134 (135)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}

Probab=81.57  E-value=1.5  Score=35.42  Aligned_cols=60  Identities=8%  Similarity=-0.012  Sum_probs=41.1

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-------------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-------------GWQPYYFACDERGGLHWRDGRMKFMVL  111 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-------------~~G~~YFiCg~~~g~HC~~G~mKl~V~  111 (119)
                      -+++.||+++|+..... .. .|++..- ....-..|..             ++|.++|.|..+  +|=..| |+-.|.
T Consensus        57 i~v~~Gd~v~~~~~N~~-~~-~h~~~~~-g~~~~~~~~i~pG~~~~~~f~~~~~Gt~~y~~~~~--~h~~~G-m~G~i~  129 (447)
T 2dv6_A           57 LVVHEGETVQVNLVNGE-GA-QHDVVVD-QYAARSAIVNGKNASSTFSFVASKVGEFNYYCSIA--GHRQAG-MEGNIQ  129 (447)
T ss_dssp             EEEETTCEEEEEEECSS-SS-CBCCEET-TTTEECCCBCSTTBEEEEEEECCSCEEEEEECCST--THHHHT-CEEEEE
T ss_pred             EEEcCCCEEEEEEEcCC-CC-ceEEEEc-cCCcccceecCCCCeEEEEEEcCCCEEEEEEeCCC--ChhhCC-CEEEEE
Confidence            46788999998886542 22 3877542 4444456754             789999999988  787778 654443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d2cbpa_	96	b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ	4e-08
d1jera_	110	b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ	4e-06
d1ws8a_	104	b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo)	6e-06
d1f56a_	91	b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera	2e-05

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score = 45.2 bits (107), Expect = 4e-08
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 28/102 (27%)

Query: 25  IVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI 84
           +VG S  W   FN   W  +   F   D+L+F Y+P    V      ++ N   +  C+ 
Sbjct: 4   VVGGSGGW--TFNTESWP-KGKRFRAGDILLFNYNPSMHNV------VVVNQGGFSTCNT 54

Query: 85  G----------------WQPYYFACDERGGLHWRDGRMKFMV 110
                                YF C+  G  H + G MK  V
Sbjct: 55  PAGAKVYTSGRDQIKLPKGQSYFICNFPG--HCQSG-MKIAV 93

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score = 40.3 bits (94), Expect = 4e-06
 Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 30/107 (28%)

Query: 25  IVGSSDNWHFGFN---YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLR 81
           IVG +  W    +   YS WA     F V D L F +      V     + +    S+  
Sbjct: 7   IVGDNTGWSVPSSPNFYSQWA-AGKTFRVGDSLQFNFPANAHNV-----HEMETKQSFDA 60

Query: 82  CDIG------------------WQPYYFACDERGGLHWRDGRMKFMV 110
           C+                       +YF C      H  +G  K  +
Sbjct: 61  CNFVNSDNDVERTSPVIERLDELGMHYFVCTVGT--HCSNG-QKLSI 104

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

 Score = 40.0 bits (93), Expect = 6e-06
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 29/105 (27%)

Query: 25  IVGSSDNWHF--GFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRC 82
            VG S  W     ++Y+ WA  +  F+V D L+F Y+     V      L  +   +  C
Sbjct: 6   KVGDSTGWTTLVPYDYAKWA-SSNKFHVGDSLLFNYNNKFHNV------LQVDQEQFKSC 58

Query: 83  DIGWQ-----------------PYYFACDERGGLHWRDGRMKFMV 110
           +                      +YF C   G  H + G  K  +
Sbjct: 59  NSSSPAASYTSGADSIPLKRPGTFYFLCGIPG--HCQLG-QKVEI 100

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 38.3 bits (89), Expect = 2e-05
 Identities = 24/95 (25%), Positives = 28/95 (29%), Gaps = 29/95 (30%)

Query: 32  WHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCD-------- 83
           W F  N    A +   F   DVLVFKY      V      +  N   Y  C         
Sbjct: 7   WSFNVN---GA-RGKSFRAGDVLVFKYIKGQHNV------VAVNGRGYASCSAPRGARTY 56

Query: 84  --------IGWQPYYFACDERGGLHWRDGRMKFMV 110
                   +     YF C   G  H   G MK  +
Sbjct: 57  SSGQDRIKLTRGQNYFICSFPG--HCGGG-MKIAI 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1ws8a_	104	Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663	100.0
d2cbpa_	96	Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3	99.98
d1jera_	110	Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3	99.98
d1f56a_	91	Plantacyanin {Spinach (Spinacia oleracea) [TaxId:	99.94
d1bypa_	99	Plastocyanin {White campion (Silene pratensis) [Ta	98.15
d2q5ba1	105	Plastocyanin {Cyanobacterium (Phormidium laminosum	98.03
d1iuza_	98	Plastocyanin {Ulva pertusa, a sea lettuce [TaxId:	98.0
d1kdja_	102	Plastocyanin {Fern (Adiantum capillus-veneris) [Ta	97.99
d2cj3a1	105	Plastocyanin {Anabaena variabilis [TaxId: 1172]}	97.9
d1qhqa_	139	Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]	97.83
d2plta_	98	Plastocyanin {Green alga (Chlamydomonas reinhardti	97.75
d1plca_	99	Plastocyanin {Poplar (Populus nigra), variant ital	97.67
d2jxma1	97	Plastocyanin {Photosynthetic prokaryote (Prochloro	97.48
d1paza_	120	Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta	97.48
d1pcsa_	98	Plastocyanin {Cyanobacterium (Synechocystis sp.),	97.27
d1bqka_	124	Pseudoazurin {Achromobacter cycloclastes [TaxId: 2	97.16
d1adwa_	123	Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236	97.13
d1ikop_	141	Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId:	97.13
d1pmya_	123	Pseudoazurin {Methylobacterium extorquens, strain	97.1
d1bxua_	91	Plastocyanin {Cyanobacterium (Synechocystis sp.),	96.87
d1shxa1	138	Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}	96.85
d2ov0a1	105	Amicyanin {Paracoccus denitrificans [TaxId: 266]}	96.77
d1e30a_	153	Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920	96.29
d1id2a_	106	Amicyanin {Paracoccus versutus (Thiobacillus versu	95.97
d1cuoa_	129	Azurin {Methylomonas sp. j [TaxId: 32038]}	94.39
d1ibya_	112	Red copper protein nitrosocyanin {Nitrosomonas eur	91.31
d1qnia1	131	Nitrous oxide reductase, C-terminal domain {Pseudo	87.33
d2ccwa1	129	Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d	86.35
d1fwxa1	132	Nitrous oxide reductase, C-terminal domain {Paraco	86.31
d2cuaa_	122	Cytochrome c oxidase {Thermus thermophilus, ba3 ty	82.33

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=100.00  E-value=6e-34  Score=198.05  Aligned_cols=85  Identities=25%  Similarity=0.412  Sum_probs=79.5

Q ss_pred             CCcEEEecCCCCCCCC--CCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-------------
Q 041261           20 GPNKIIVGSSDNWHFG--FNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-------------   84 (119)
Q Consensus        20 ~a~~~~VGg~~gW~~~--~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-------------   84 (119)
                      .|++|+|||+.||+++  .+|++||+ +++|+|||+|+|+|+++     .|+|++| ++++|+.|+.             
T Consensus         1 ~at~~~VGg~~gW~~~~~~~Y~~Wa~-~~~f~vGD~l~F~y~~~-----~h~V~~v-~~~~y~~C~~~~~~~~~~~G~~~   73 (104)
T d1ws8a_           1 MATVHKVGDSTGWTTLVPYDYAKWAS-SNKFHVGDSLLFNYNNK-----FHNVLQV-DQEQFKSCNSSSPAASYTSGADS   73 (104)
T ss_dssp             CCCEEETTGGGCSCSSSCCCHHHHHH-TSCBCTTCEEEEECCTT-----TCCEEEE-CHHHHHHTCCSSCSEEECSSEEE
T ss_pred             CCcEEEeCCcCccCcCCCcCHHHHhh-CCcCCCCCEEEEEECCC-----CceEEEE-CHHHhcCCcCCCccccccCCCeE
Confidence            3789999999999874  57999999 69999999999999998     7999999 9999999998             


Q ss_pred             ----CCcceEEEccCCCCCCCCCCcceEEEEecC
Q 041261           85 ----GWQPYYFACDERGGLHWRDGRMKFMVLPLL  114 (119)
Q Consensus        85 ----~~G~~YFiCg~~~g~HC~~G~mKl~V~p~~  114 (119)
                          ++|++||||+++  +||++| |||+|.++|
T Consensus        74 v~l~~~g~~yF~C~~~--~HC~~G-mkl~I~V~P  104 (104)
T d1ws8a_          74 IPLKRPGTFYFLCGIP--GHCQLG-QKVEIKVDP  104 (104)
T ss_dssp             EECCSSEEEEEECCST--TTTTTT-CEEEEEECC
T ss_pred             EEEecCccEEEECCCc--chhhCC-CEEEEEECC
Confidence                899999999999  999999 999999875

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=99.98  E-value=1.4e-33  Score=195.09  Aligned_cols=80  Identities=31%  Similarity=0.612  Sum_probs=74.5

Q ss_pred             cEEEecCCCCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC----------------C
Q 041261           22 NKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI----------------G   85 (119)
Q Consensus        22 ~~~~VGg~~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~----------------~   85 (119)
                      +.|+|||+.||++  +|++||+ +++|++||+|+|+|+++     +|+|+|| ++++|++|+.                .
T Consensus         1 A~y~VGg~~GW~~--~y~~Wa~-~~~F~vGD~LvF~y~~~-----~h~V~~V-~~~~Y~~C~~~~~~~~~~~G~~~v~L~   71 (96)
T d2cbpa_           1 AVYVVGGSGGWTF--NTESWPK-GKRFRAGDILLFNYNPS-----MHNVVVV-NQGGFSTCNTPAGAKVYTSGRDQIKLP   71 (96)
T ss_dssp             CEEETTGGGCSCS--SCTTTTT-TCCBCTTCEEEEECCTT-----TCCEEEE-CHHHHHHTCCCTTCEEECSSEEEEECC
T ss_pred             CEEEcCCCCCCCc--CHHHHhC-CCcEecCCEEEEecCCC-----CceEEEE-ChHHcCccCCCCCcccccCCCeEEEeC
Confidence            3699999999985  6999998 69999999999999998     7999999 9999999998                5


Q ss_pred             CcceEEEccCCCCCCCCCCcceEEEEec
Q 041261           86 WQPYYFACDERGGLHWRDGRMKFMVLPL  113 (119)
Q Consensus        86 ~G~~YFiCg~~~g~HC~~G~mKl~V~p~  113 (119)
                      .|++||||+++  +||+.| |||+|.+|
T Consensus        72 ~G~~YFic~~~--~hC~~G-~Kl~V~Vl   96 (96)
T d2cbpa_          72 KGQSYFICNFP--GHCQSG-MKIAVNAL   96 (96)
T ss_dssp             SEEEEEECCST--TTGGGT-CEEEEEEC
T ss_pred             CCCCEEEeCCC--CcCcCC-CEEEEEEC
Confidence            69999999999  999999 99999875

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=99.98  E-value=1.5e-33  Score=196.70  Aligned_cols=87  Identities=25%  Similarity=0.452  Sum_probs=81.6

Q ss_pred             CCcEEEecCCCCCCCCCC---chhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC------------
Q 041261           20 GPNKIIVGSSDNWHFGFN---YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI------------   84 (119)
Q Consensus        20 ~a~~~~VGg~~gW~~~~n---Y~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~------------   84 (119)
                      +|++|+|||+.||+++.+   |++||+ +++|+|||+|+|+|+++     .|+|+||.++++|+.|+.            
T Consensus         2 ~at~~~VGg~~gW~~~~~~~~Y~~Wa~-~~~f~vGD~l~F~~~~~-----~H~V~~v~~~~~y~~c~~~~~~~~~~~~~~   75 (110)
T d1jera_           2 QSTVHIVGDNTGWSVPSSPNFYSQWAA-GKTFRVGDSLQFNFPAN-----AHNVHEMETKQSFDACNFVNSDNDVERTSP   75 (110)
T ss_dssp             CCCEEETTGGGCSSCCSSTTHHHHHHH-TCCEETTCEEEECCCTT-----TCCCEEESCHHHHHHTCCTTSCCCCCCCSC
T ss_pred             cceEEEeCCCCCcccCCCcchhhhhhc-CCcEeCCCEEEEEeCCC-----CceEEEECCcccccccccCCccccccCCCc
Confidence            589999999999999876   999999 69999999999999988     699999977999999997            


Q ss_pred             ------CCcceEEEccCCCCCCCCCCcceEEEEecCC
Q 041261           85 ------GWQPYYFACDERGGLHWRDGRMKFMVLPLLR  115 (119)
Q Consensus        85 ------~~G~~YFiCg~~~g~HC~~G~mKl~V~p~~~  115 (119)
                            ++|++||||+.+  +||+.| |||+|.+++.
T Consensus        76 ~~~~l~~~G~~yF~C~~~--~HC~~G-mk~~I~V~~a  109 (110)
T d1jera_          76 VIERLDELGMHYFVCTVG--THCSNG-QKLSINVVAA  109 (110)
T ss_dssp             EEEECCSSEEEEEECCST--TTGGGT-CEEEEEEECC
T ss_pred             EEEEecCCccEEEECCCc--ChhhcC-CEEEEEEecC
Confidence                  899999999999  999999 9999999874

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.94  E-value=2.6e-27  Score=161.56  Aligned_cols=73  Identities=30%  Similarity=0.430  Sum_probs=66.6

Q ss_pred             EEEecCCCCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC----------------CC
Q 041261           23 KIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI----------------GW   86 (119)
Q Consensus        23 ~~~VGg~~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~----------------~~   86 (119)
                      .|.|    ||++   |.+||+ +++|+|||+|+|+|.++     .|+|+|| ++++|+.|+.                .+
T Consensus         2 ~y~v----GW~~---~~~Wa~-~~~F~vGD~LvF~y~~~-----~h~V~~v-~~~~y~~C~~~~~~~~~~~G~~~v~l~~   67 (91)
T d1f56a_           2 VYNI----GWSF---NVNGAR-GKSFRAGDVLVFKYIKG-----QHNVVAV-NGRGYASCSAPRGARTYSSGQDRIKLTR   67 (91)
T ss_dssp             EEEE----ECSS---SCBSCT-TCCBCTTCEEEEECCBT-----TBCEEEE-CHHHHHTTCCCTTCEEECSSEEEEECCS
T ss_pred             EEcc----CCcc---cccccc-CCCCcCCCEEEEEEcCC-----CCEEEEE-CHHHhCcCCCCCCcccccCCCeEEEeCC
Confidence            5777    4986   456998 69999999999999998     7999999 9999999998                67


Q ss_pred             cceEEEccCCCCCCCCCCcceEEEEe
Q 041261           87 QPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        87 G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      |++||||+++  +||+.| |||+|.+
T Consensus        68 g~~yfic~~~--~HC~~G-mkl~I~V   90 (91)
T d1f56a_          68 GQNYFICSFP--GHCGGG-MKIAINA   90 (91)
T ss_dssp             EEEEEECCST--TTTTTT-CEEEEEE
T ss_pred             CCeEEEeCCC--CcCccC-CEEEEEE
Confidence            9999999999  999999 9999986

>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: White campion (Silene pratensis) [TaxId: 52853]

Probab=98.15  E-value=1.8e-06  Score=56.00  Aligned_cols=73  Identities=22%  Similarity=0.256  Sum_probs=47.2

Q ss_pred             EEEecCCCC-CCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCccc------------Ccc------cC
Q 041261           23 KIIVGSSDN-WHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWS------------YLR------CD   83 (119)
Q Consensus        23 ~~~VGg~~g-W~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~------------Y~~------C~   83 (119)
                      +.+||.+.| =.+.++       .-++++||+|.|......    .|++... ....            ++.      ..
T Consensus         2 eV~vg~~~g~~~F~P~-------~i~v~~GdtV~f~n~~~~----~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (99)
T d1bypa_           2 EVLLGSSDGGLAFVPS-------DLSIASGEKITFKNNAGF----PHNDLFD-KKEVPAGVDVTKISMPEEDLLNAPGEE   69 (99)
T ss_dssp             EEEESCTTSCCSEESS-------EEEECTTEEEEEEECSSC----CBCCEEC-TTSSCTTCCHHHHSCCTTCCBCSTTCE
T ss_pred             EEEEEecCCceEEcCC-------EEEECCCCEEEEEECCCC----ceeEEEe-cCCCCCccccccCcccccccccCCCce
Confidence            577887643 333232       357889999999987653    5776644 2110            000      00


Q ss_pred             C-----CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           84 I-----GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        84 ~-----~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      .     ++|+|+|+|. +   ||+.| |+=.|.+
T Consensus        70 ~~~tf~~~G~y~y~C~-~---H~~~G-M~G~I~V   98 (99)
T d1bypa_          70 YSVTLTEKGTYKFYCA-P---HAGAG-MVGKVTV   98 (99)
T ss_dssp             EEEEECSCEEEEEECG-G---GTTTT-CEEEEEE
T ss_pred             EEEEecCCceEEEEEC-c---CCCCC-CEEEEEE
Confidence            0     7999999997 3   99999 9977764

>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Phormidium laminosum) [TaxId: 32059]

Probab=98.03  E-value=2.1e-06  Score=55.99  Aligned_cols=57  Identities=14%  Similarity=0.090  Sum_probs=39.9

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC--------------------------CCcceEEEccCCCCC
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI--------------------------GWQPYYFACDERGGL   99 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~--------------------------~~G~~YFiCg~~~g~   99 (119)
                      -++++||++.|......    .|++... ....-..+..                          .+|.|+|.|. +   
T Consensus        21 l~v~~GdtV~f~n~~~~----~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~G~y~y~C~-~---   91 (105)
T d2q5ba1          21 VTVHPGDTVKWVNNKLP----PHNILFD-DKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCA-P---   91 (105)
T ss_dssp             EEECTTEEEEEEECSSC----CEEEEEC-GGGSGGGCHHHHHHHCEEEEECSTTCEEEEEECTTSCSEEEEEECS-T---
T ss_pred             EEECCCCEEEEEECCCC----CceeEee-cCcccccccccCCccccccccccCCceEEEEEEeccCCceEEEEeC-C---
Confidence            57889999999876542    5777765 2222111111                          5799999997 4   


Q ss_pred             CCCCCcceEEEEe
Q 041261          100 HWRDGRMKFMVLP  112 (119)
Q Consensus       100 HC~~G~mKl~V~p  112 (119)
                      ||+.| |+-.|.+
T Consensus        92 H~~~G-M~G~I~V  103 (105)
T d2q5ba1          92 HRGAG-MVGKITV  103 (105)
T ss_dssp             TGGGT-CEEEEEE
T ss_pred             CCCCC-CEEEEEE
Confidence            99999 9887764

>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Ulva pertusa, a sea lettuce [TaxId: 3120]

Probab=98.00  E-value=8.8e-06  Score=52.58  Aligned_cols=75  Identities=16%  Similarity=0.141  Sum_probs=48.5

Q ss_pred             CcEEEecCCCC-CCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCc------------------c
Q 041261           21 PNKIIVGSSDN-WHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYL------------------R   81 (119)
Q Consensus        21 a~~~~VGg~~g-W~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~------------------~   81 (119)
                      |+...||.+.| =.+.+.       .-++.+||++.|......    .|++... ....-.                  .
T Consensus         1 a~~V~vg~~~g~~~F~P~-------~i~i~~GdtV~f~n~~~~----~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   68 (98)
T d1iuza_           1 AQIVKLGGDDGSLAFVPS-------KISVAAGEAIEFVNNAGF----PHNIVFD-EDAVPAGVDADAISYDDYLNSKGET   68 (98)
T ss_dssp             CEEEEESCTTSCCSEESS-------EEEECTTCEEEEEECSSC----CEEEEEC-TTSSCTTCCHHHHCEEEEECSTTCE
T ss_pred             CeEEEEecCCCcEEEeCC-------EEEECCCCEEEEEECCCC----cccEEEe-CCCcccccccccccccCcccCCCcE
Confidence            45677877654 333332       357889999999887653    5776654 211100                  0


Q ss_pred             cCC---CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           82 CDI---GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        82 C~~---~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      -..   .+|.|+|+|. +   ||..| |+=.|.+
T Consensus        69 ~~~~f~~~G~y~y~C~-~---H~~~G-M~G~I~V   97 (98)
T d1iuza_          69 VVRKLSTPGVYGVYCE-P---HAGAG-MKMTITV   97 (98)
T ss_dssp             EEEECCSCEEEEEECT-T---TGGGT-CEEEEEE
T ss_pred             EEEecCCCceEEEEeC-C---CccCC-CeEEEEE
Confidence            000   8999999997 3   99999 9988764

>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=97.99  E-value=2.9e-06  Score=54.97  Aligned_cols=73  Identities=16%  Similarity=0.118  Sum_probs=47.2

Q ss_pred             EEEecCCCC-CCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCccc-------------------
Q 041261           23 KIIVGSSDN-WHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRC-------------------   82 (119)
Q Consensus        23 ~~~VGg~~g-W~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C-------------------   82 (119)
                      +..||.+.| =.+.++       .-++++||++.|....+.    .|+++.. ....-...                   
T Consensus         2 ~V~vg~~~g~~~F~P~-------~l~v~~GdtV~f~n~~~~----~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (102)
T d1kdja_           2 KVEVGDEVGNFKFYPD-------SITVSAGEAVEFTLVGET----GHNIVFD-IPAGAPGTVASELKAASMDENDLLSED   69 (102)
T ss_dssp             EEEESCTTCCCCEESS-------EEEECTTCCEEEEECSSS----CBCCEEC-CCTTCCHHHHHHHHHTSCCTTCCBBTT
T ss_pred             EEEEeecCCceEEeCC-------EEEECCCCEEEEEECCCC----ceeEEEe-cCCCCCcccccccccCcccccccccCC
Confidence            456775543 232222       357889999999987763    5777765 22211110                   


Q ss_pred             --CC-----CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           83 --DI-----GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        83 --~~-----~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                        ..     ++|.|+|+|. +   ||..| |+=.|.+
T Consensus        70 ~~~~~~~f~~~G~y~Y~C~-~---H~~~G-M~G~I~V  101 (102)
T d1kdja_          70 EPSFKAKVSTPGTYTFYCT-P---HKSAN-MKGTLTV  101 (102)
T ss_dssp             BCEEEECCCSCEEEEEECS-T---TGGGT-CEEEEEE
T ss_pred             ccEEEEeeCCCceEEEEec-C---CcccC-CeEEEEE
Confidence              00     8999999997 3   99999 9877654

>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Anabaena variabilis [TaxId: 1172]

Probab=97.90  E-value=8.8e-06  Score=52.88  Aligned_cols=57  Identities=18%  Similarity=0.172  Sum_probs=39.4

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC--------------------------CCcceEEEccCCCCC
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI--------------------------GWQPYYFACDERGGL   99 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~--------------------------~~G~~YFiCg~~~g~   99 (119)
                      -++++||+|.|......    .|++... ....-.....                          .+|+|+|+|. +   
T Consensus        21 i~v~~GdtV~f~n~~~~----~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~G~y~y~C~-~---   91 (105)
T d2cj3a1          21 LTIKPGDTVEFLNNKVP----PHNVVFD-AALNPAKSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCE-P---   91 (105)
T ss_dssp             EEECTTCEEEEEECSSC----CEEEEEC-SSSSTTCCHHHHHHHCEEEEECSTTCEEEEECCTTCCSEEEEEECT-T---
T ss_pred             EEECCCCEEEEEECCCC----ceeeEec-cCCCCccccccCCcccccccccCCCcceEEEEEeccCCceEEEEeC-C---
Confidence            57889999999887663    4666654 2221111100                          5899999997 3   


Q ss_pred             CCCCCcceEEEEe
Q 041261          100 HWRDGRMKFMVLP  112 (119)
Q Consensus       100 HC~~G~mKl~V~p  112 (119)
                      ||..| |+=.|.+
T Consensus        92 H~~~G-M~G~I~V  103 (105)
T d2cj3a1          92 HRGAG-MVGKITV  103 (105)
T ss_dssp             TGGGT-CEEEEEE
T ss_pred             CcCCC-cEEEEEE
Confidence            99999 9887765

>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Auracyanin
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.83  E-value=6.2e-05  Score=51.22  Aligned_cols=87  Identities=16%  Similarity=0.184  Sum_probs=53.1

Q ss_pred             CCCCCcEEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccC----------------
Q 041261           17 DDDGPNKIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSY----------------   79 (119)
Q Consensus        17 ~~~~a~~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y----------------   79 (119)
                      +...+.+..|+-. .+=.+.++       .-+++.||++.|.+....+.-..|+++.+......                
T Consensus        11 ~~~~~~tvev~~~~~~m~F~p~-------~i~v~aG~~V~~~~~N~~~~~~~Hn~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (139)
T d1qhqa_          11 NETPAQTVEVRAAPDALAFAQT-------SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALF   83 (139)
T ss_dssp             CSCCSEEEEEEBCSSSSSBSCS-------EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTT
T ss_pred             cCCCCeEEEEEecCCcceEcCC-------eEEECCCCEEEEEEeCCcccceeEEEeecccchhhHHHHHHhhhccchhcc
Confidence            3344566666532 23333322       34788899999988654322346999887321110                


Q ss_pred             c-------------ccCC-----------CCcceEEEccCCCCCCCCCCcceEEEEec
Q 041261           80 L-------------RCDI-----------GWQPYYFACDERGGLHWRDGRMKFMVLPL  113 (119)
Q Consensus        80 ~-------------~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V~p~  113 (119)
                      .             .-..           ++|.|.|+|+++  +|+..| |+-.|.+.
T Consensus        84 ~~~p~~~~v~~~t~~~~pg~s~~i~f~~~~~G~y~f~Ct~p--gH~~~G-M~G~i~V~  138 (139)
T d1qhqa_          84 VPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFP--GHYLAG-MKGTLTVT  138 (139)
T ss_dssp             CCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCST--TTTTTT-CEEEEEEE
T ss_pred             ccCCCcccccccccccCCcceEEEEEecCCCeEEEEEcCCc--Cccccc-CeEEEEEc
Confidence            0             0000           789999999999  999999 88555543

>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.75  E-value=2e-05  Score=50.62  Aligned_cols=71  Identities=14%  Similarity=0.193  Sum_probs=45.6

Q ss_pred             EEEecCCCC-CCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-----------------
Q 041261           23 KIIVGSSDN-WHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-----------------   84 (119)
Q Consensus        23 ~~~VGg~~g-W~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-----------------   84 (119)
                      +..||.+.| =.+.++       .-++.+||++.|......    .|++... ....  .+..                 
T Consensus         3 TV~vg~~~g~~~F~P~-------~i~v~~GdtV~f~n~~~~----~h~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~t   68 (98)
T d2plta_           3 TVKLGADSGALEFVPK-------TLTIKSGETVNFVNNAGF----PHNIVFD-EDAI--PSGVNADAISRDDYLNAPGET   68 (98)
T ss_dssp             EEEESCTTCCSSEESS-------EEEECTTCEEEEEECSSC----CEEEEEC-GGGS--CTTCCHHHHCEEEEECSTTCE
T ss_pred             EEEEeeCCCceEEeCC-------EEEECCCCEEEEEECCCC----ceeEEEe-cCCc--cccccCCcccccccccCCCce
Confidence            566775443 333222       357889999999877653    4554433 2211  1111                 


Q ss_pred             ------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 ------GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ------~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                            .+|.|||+|. +   ||..| |+=.|.+
T Consensus        69 ~~~tf~~~G~y~y~C~-~---H~~~G-M~G~I~V   97 (98)
T d2plta_          69 YSVKLTAAGEYGYYCE-P---HQGAG-MVGKIIV   97 (98)
T ss_dssp             EEEECCSCEEEEEECG-G---GGGGT-CEEEEEE
T ss_pred             EEEEecCCceEEEEeC-c---CCCCC-CEEEEEE
Confidence                  8999999996 3   99999 9887764

>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Poplar (Populus nigra), variant italica [TaxId: 3691]

Probab=97.67  E-value=2.7e-05  Score=50.95  Aligned_cols=73  Identities=21%  Similarity=0.292  Sum_probs=46.9

Q ss_pred             EEEecCCC-CCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCccc----------------------C
Q 041261           23 KIIVGSSD-NWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWS----------------------Y   79 (119)
Q Consensus        23 ~~~VGg~~-gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~----------------------Y   79 (119)
                      +.++|.+. +=.+.++       .-++.+||++.|..+.+.    .|+|........                      |
T Consensus         2 ~V~~g~d~g~~~F~P~-------~iti~~GdtV~f~n~~~~----~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~   70 (99)
T d1plca_           2 DVLLGADDGSLAFVPS-------EFSISPGEKIVFKNNAGF----PHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETF   70 (99)
T ss_dssp             EEEESCTTCCSCEESS-------EEEECTTCEEEEEECSSC----CBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEE
T ss_pred             EEEEEeCCCceEEeCC-------EEEECCCCEEEEEECCCC----CccEEEccCcCCCccccccCcccccccccCCCceE
Confidence            45666443 3333332       357889999999886652    699976511100                      0


Q ss_pred             cccCC-CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           80 LRCDI-GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        80 ~~C~~-~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      .- .+ ++|.|+|+|. +   |+..| |+=.|.+
T Consensus        71 ~~-tF~~~G~y~Y~C~-p---H~~~G-M~G~I~V   98 (99)
T d1plca_          71 EV-ALSNKGEYSFYCS-P---HQGAG-MVGKVTV   98 (99)
T ss_dssp             EE-ECCSCEEEEEECG-G---GTTTT-CEEEEEE
T ss_pred             EE-ecCCCceEEEEeC-C---CcCCC-cEEEEEE
Confidence            00 00 8999999995 4   99999 9877764

>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]

Probab=97.48  E-value=8.6e-05  Score=47.61  Aligned_cols=58  Identities=19%  Similarity=0.132  Sum_probs=38.9

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcc--cCcccCC----------------CCcceEEEccCCCCCCCCCCcce
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW--SYLRCDI----------------GWQPYYFACDERGGLHWRDGRMK  107 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~--~Y~~C~~----------------~~G~~YFiCg~~~g~HC~~G~mK  107 (119)
                      -++++||++.|......    .|++.......  +......                .||.|||.|.    -|+..| |+
T Consensus        21 i~V~~GdtV~f~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~y~Y~C~----~H~~~G-M~   91 (97)
T d2jxma1          21 LSISAGDTVEFVMNKVG----PHNVIFDKVPAGESAPALSNTKLAIAPGSFYSVTLGTPGTYSFYCT----PHRGAG-MV   91 (97)
T ss_dssp             EEECTTCEEEEEECSSC----CCCBEEEECCTTSCHHHHCBCCCCCSCSCCEEEECCSCSEEEEECS----STTTTT-CE
T ss_pred             EEECCCCEEEEEECCCc----ceeEEEecCCCccccccccccccccCcceEEEEecCCCeEEEEEEc----cCCCCC-CE
Confidence            57788999999987763    45554431111  1111111                9999999996    399999 99


Q ss_pred             EEEEe
Q 041261          108 FMVLP  112 (119)
Q Consensus       108 l~V~p  112 (119)
                      =.|.+
T Consensus        92 G~I~V   96 (97)
T d2jxma1          92 GTITV   96 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87764

>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

Probab=97.48  E-value=0.00011  Score=50.12  Aligned_cols=60  Identities=15%  Similarity=0.097  Sum_probs=44.0

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcccC-----cccCC---------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSY-----LRCDI---------GWQPYYFACDERGGLHWRDGRMKFMVL  111 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y-----~~C~~---------~~G~~YFiCg~~~g~HC~~G~mKl~V~  111 (119)
                      -++.+||++.|.....     .|+|..+ .....     .....         .+|.|+|.|. +   ||..| |+=.|.
T Consensus        23 itI~~GDTV~f~n~~~-----~Hnv~~~-~~~~~~~~~~~~~~~~~~~s~tF~~~G~y~Y~Ct-p---H~~~G-M~G~I~   91 (120)
T d1paza_          23 IKANPGDTVTFIPVDK-----GHNVESI-KDMIPEGAEKFKSKINENYVLTVTQPGAYLVKCT-P---HYAMG-MIALIA   91 (120)
T ss_dssp             EEECTTCEEEEEESSS-----SCCCEEC-TTCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT-T---TGGGT-CEEEEE
T ss_pred             EEECCCCEEEEeeCCC-----cceEeec-cccCcccccccccccCceEEEEecCCCeEEEEEe-e---CCCCC-CEEEEE
Confidence            4788999999999876     6998876 33211     11111         9999999997 3   99999 998887


Q ss_pred             ecCCC
Q 041261          112 PLLRR  116 (119)
Q Consensus       112 p~~~~  116 (119)
                      +-..|
T Consensus        92 Vg~~~   96 (120)
T d1paza_          92 VGDSP   96 (120)
T ss_dssp             ESSSC
T ss_pred             ECCCC
Confidence            65433

>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]

Probab=97.27  E-value=8.6e-05  Score=48.15  Aligned_cols=58  Identities=14%  Similarity=0.147  Sum_probs=39.7

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcccCc-------------ccC-----C-CCcceEEEccCCCCCCCCCCcc
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYL-------------RCD-----I-GWQPYYFACDERGGLHWRDGRM  106 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~-------------~C~-----~-~~G~~YFiCg~~~g~HC~~G~m  106 (119)
                      -++.+||++.|......    .|+|....+....+             .=.     + ++|.|+|+|. +   |+..| |
T Consensus        21 i~v~~GdtV~~~n~~~~----~H~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~tf~~~G~y~Y~C~-~---H~~~g-M   91 (98)
T d1pcsa_          21 VTIKAGEEVKWVNNKLS----PHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTEPGTYTYYCE-P---HRGAG-M   91 (98)
T ss_dssp             EEECTTCEEEEEECSSC----CEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEECCSCEEEEEECG-G---GTTTT-C
T ss_pred             EEECCCCEEEEeECCCC----ccceEEeccccCCCccccccccccccCCCcEEEEeccCCceEEEEec-c---CCCCC-C
Confidence            57788999999876542    69987753221100             000     0 8999999996 4   99999 9


Q ss_pred             eEEEEe
Q 041261          107 KFMVLP  112 (119)
Q Consensus       107 Kl~V~p  112 (119)
                      +=.|.+
T Consensus        92 ~G~I~V   97 (98)
T d1pcsa_          92 VGKVVV   97 (98)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            877764

>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Achromobacter cycloclastes [TaxId: 223]

Probab=97.16  E-value=0.00037  Score=47.68  Aligned_cols=59  Identities=15%  Similarity=0.026  Sum_probs=41.8

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCc--ccCcccCC-----------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNL--WSYLRCDI-----------GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~--~~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      -++.+||++.|.....     .|++..+...  .....-..           .+|.|+|+|. +   ||..| |+=.|.+
T Consensus        23 itI~~GdTV~w~n~~~-----~~~~~~~~~~~p~~~~~~~~~~~~~~s~Tf~~~G~Y~Y~C~-p---H~~~G-M~G~IvV   92 (124)
T d1bqka_          23 LKVAPGDTVTFIPTDK-----GHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCT-P---HYGMG-MVGVVQV   92 (124)
T ss_dssp             EEECTTCEEEEECSSS-----SCCCEECTTCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT-T---TGGGT-CEEEEEE
T ss_pred             EEECCCCeEEEEECCC-----CcccccccccCCCccccccccCCccEEEecCCCceEEEEec-c---CcCCC-CEEEEEE
Confidence            4788999999999876     4666555211  12222222           9999999996 3   99999 9988876


Q ss_pred             cC
Q 041261          113 LL  114 (119)
Q Consensus       113 ~~  114 (119)
                      -.
T Consensus        93 gd   94 (124)
T d1bqka_          93 GD   94 (124)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Thiosphaera pantotropha [TaxId: 82367]

Probab=97.13  E-value=0.00034  Score=47.11  Aligned_cols=61  Identities=16%  Similarity=0.063  Sum_probs=43.3

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcc--cCcccCC-----------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW--SYLRCDI-----------GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~--~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      -++.+||++.|.....     .|++..+....  ....-..           .+|.|+|+|..    ||..| |+=.|.+
T Consensus        23 itI~~GdtV~f~n~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~G~Y~Y~C~p----H~~~G-M~G~I~V   92 (123)
T d1adwa_          23 VRAEPGDVINFVPTDK-----SHNVEAIKEILPEGVESFKSKINESYTLTVTEPGLYGVKCTP----HFGMG-MVGLVQV   92 (123)
T ss_dssp             EEECTTEEEEEEESSS-----SCCCEECTTSCCTTCCCCBCCTTCCEEEEECSCEEEEEECGG----GGGGT-CEEEEEE
T ss_pred             EEECCCCEEEEEeCCC-----CcceecccCccccccccccccCCcceEEeccCCCeEEEEEcc----CCCCC-CEEEEEE
Confidence            5788999999999876     46666652221  1111111           99999999973    99999 9988877


Q ss_pred             cCCC
Q 041261          113 LLRR  116 (119)
Q Consensus       113 ~~~~  116 (119)
                      -..|
T Consensus        93 g~~~   96 (123)
T d1adwa_          93 GDAP   96 (123)
T ss_dssp             SSSC
T ss_pred             CCCC
Confidence            5443

>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-b2 ectodomain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00016  Score=51.37  Aligned_cols=36  Identities=17%  Similarity=0.091  Sum_probs=27.3

Q ss_pred             eEeCcEEEEEeCCCCCC----ccccceEEecCcccCcccCC
Q 041261           48 FYVNDVLVFKYDPPNDT----VFPHSEYLLPNLWSYLRCDI   84 (119)
Q Consensus        48 F~vGD~LvF~Y~~~~~~----~~~h~V~~V~~~~~Y~~C~~   84 (119)
                      .++||.|-+--+.....    ...+.+++| ++++|++|+.
T Consensus        26 V~i~D~ldIiCP~y~~~~~~~~E~~~lY~V-~~e~y~~C~~   65 (141)
T d1ikop_          26 PQIGDKLDIICPKVDSKTVGQYEYYKVYMV-DKDQADRCTI   65 (141)
T ss_dssp             CCTTCEEEEECCCCCSSSCSCCCBEEEEEE-CHHHHHHTBC
T ss_pred             eccCCEEEEECCCCCCCCCCcceEEEEEEE-CHHHhCcccC
Confidence            35689999965543322    356899999 9999999997

>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Methylobacterium extorquens, strain am1 [TaxId: 408]

Probab=97.10  E-value=0.00053  Score=46.29  Aligned_cols=58  Identities=17%  Similarity=0.127  Sum_probs=40.4

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcc--cCcccCC-----------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW--SYLRCDI-----------GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~--~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      -++.+||++.|.....     .|.+..+....  .......           .+|.|+|+|.    -||..| |+=.|.+
T Consensus        23 ltV~~GDTV~f~n~d~-----~~h~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~G~Y~Y~C~----pH~~~G-M~G~I~V   92 (123)
T d1pmya_          23 VRLKPGDSIKFLPTDK-----GHNVETIKGMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA----PHYMMG-MVALVVV   92 (123)
T ss_dssp             EEECTTCEEEEECSSS-----SCCCEECTTSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS----TTTTTT-CEEEEEE
T ss_pred             EEECCCCEEEEeeCCC-----CcccccccccCcccccccccccccccccccCCCceEEEEec----cCCCCC-CEEEEEE
Confidence            4778999999998765     35555552221  2222222           9999999996    399999 9888865


Q ss_pred             c
Q 041261          113 L  113 (119)
Q Consensus       113 ~  113 (119)
                      -
T Consensus        93 g   93 (123)
T d1pmya_          93 G   93 (123)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]

Probab=96.87  E-value=0.00061  Score=43.72  Aligned_cols=58  Identities=14%  Similarity=0.176  Sum_probs=40.3

Q ss_pred             CCCeEeCcEEEEEeCCCCCCccccceEEecCcccC--cc-----cCC------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261           45 NAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSY--LR-----CDI------GWQPYYFACDERGGLHWRDGRMKFMVL  111 (119)
Q Consensus        45 ~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y--~~-----C~~------~~G~~YFiCg~~~g~HC~~G~mKl~V~  111 (119)
                      .-++.+||++.|......    .|++... ...+.  +.     -..      .||.|+|.|..    |...| |+=.|.
T Consensus        20 ~i~I~~GdtV~f~n~d~~----~h~~~~~-~~~~~~~~~~~~~~g~~~~~tF~~~G~y~Y~C~~----H~~~g-M~G~I~   89 (91)
T d1bxua_          20 TIEIQAGDTVQWVNNKLA----PHNVVVE-GQPELSHKDLAFSPGETFEATFSEPGTYTYYCEP----HRGAG-MVGKIV   89 (91)
T ss_dssp             EEEECTTCEEEEEECSSC----CEEEEET-TCGGGCEEEEECSTTCEEEEECCSCEEEEEECTT----TGGGT-CEEEEE
T ss_pred             EEEECCCCEEEEEECCcC----CceEEec-ccccccccccccCCCCCEEEEeccCceEEEEeCC----CCCCC-CEEEEE
Confidence            357889999999987653    5776654 33221  11     111      89999999963    99999 987776


Q ss_pred             e
Q 041261          112 P  112 (119)
Q Consensus       112 p  112 (119)
                      +
T Consensus        90 V   90 (91)
T d1bxua_          90 V   90 (91)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-a5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.00093  Score=47.12  Aligned_cols=36  Identities=25%  Similarity=0.292  Sum_probs=27.3

Q ss_pred             eEeCcEEEEEeCCCCCC-----ccccceEEecCcccCcccCC
Q 041261           48 FYVNDVLVFKYDPPNDT-----VFPHSEYLLPNLWSYLRCDI   84 (119)
Q Consensus        48 F~vGD~LvF~Y~~~~~~-----~~~h~V~~V~~~~~Y~~C~~   84 (119)
                      +++||.|-+--+....+     ...+.+++| ++++|++|+.
T Consensus        25 V~i~D~ldIiCP~y~~~~~~~~~E~y~lY~V-s~e~y~~C~~   65 (138)
T d1shxa1          25 VCINDYLDVFCPHYEDSVPEDKTERYVLYMV-NFDGYSACDH   65 (138)
T ss_dssp             ECTTCEEEEECCCCCTTCCSTTCCCEEEEEE-CHHHHHTTCS
T ss_pred             eccCCEEEEECCCCCCCCCCCCceEEEEEEE-CHHHhccccC
Confidence            45699999966543222     246889999 9999999997

>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.77  E-value=0.0015  Score=42.67  Aligned_cols=56  Identities=16%  Similarity=0.179  Sum_probs=39.3

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCc---ccCcccCC-----------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNL---WSYLRCDI-----------GWQPYYFACDERGGLHWRDGRMKFMVL  111 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~---~~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V~  111 (119)
                      -++++||++.|..+...    .|+|......   ..++.-..           +||.|+|.|+.    |  .| |+=.|.
T Consensus        35 i~V~~GdtV~f~N~d~~----~H~v~~~~~~~~~~~~~~~~~~~g~~~~~tf~~pG~y~y~C~~----H--~~-M~G~I~  103 (105)
T d2ov0a1          35 LHVKVGDTVTWINREAM----PHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTP----H--PF-MRGKVV  103 (105)
T ss_dssp             EEECTTCEEEEEECSSS----CBCCEECTTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSS----C--TT-CEEEEE
T ss_pred             EEECCCCEEEEEECCCC----ceeEEEecccCCcccccccccCCCceEEEEecCCeEEEEEecC----C--CC-CEEEEE
Confidence            47889999999876542    6999876321   12333322           99999999996    5  57 987776


Q ss_pred             e
Q 041261          112 P  112 (119)
Q Consensus       112 p  112 (119)
                      +
T Consensus       104 V  104 (105)
T d2ov0a1         104 V  104 (105)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Rusticyanin
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=96.29  E-value=0.006  Score=41.43  Aligned_cols=62  Identities=15%  Similarity=0.093  Sum_probs=40.9

Q ss_pred             CeEeCcEEEEEeCCCCCCccccceEEecCcccC--------------cccCC--------------CCcceEEEccCCCC
Q 041261           47 PFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSY--------------LRCDI--------------GWQPYYFACDERGG   98 (119)
Q Consensus        47 ~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y--------------~~C~~--------------~~G~~YFiCg~~~g   98 (119)
                      +++.||+|.|.+... +....|+..+......+              ..|..              .||.|||.|..+  
T Consensus        63 ~v~~Gd~V~i~v~N~-~~~~~H~~~ih~~g~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~f~~~~~pGty~YhCh~~--  139 (153)
T d1e30a_          63 EIPAGATVDVTFINT-NKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQIP--  139 (153)
T ss_dssp             EECTTCEEEEEEEEC-CTTCCCCCEEESCCSSCCSSCCCCSEEEEBCCCCCCBTTEEEEEEEEECCCSEEEEEECCST--
T ss_pred             EEeCCCEEEEEEEeC-CCCCcccEEEEcCCCCccccccccccCCCccceeeecCCCEEEEEEEeCCCCeEEEEeCCch--
Confidence            457799999998643 22235777665211111              12222              689999999999  


Q ss_pred             CCCCCCcceEEEEe
Q 041261           99 LHWRDGRMKFMVLP  112 (119)
Q Consensus        99 ~HC~~G~mKl~V~p  112 (119)
                      +|=..| |.=.|.+
T Consensus       140 ~H~~~G-M~G~iiV  152 (153)
T d1e30a_         140 GHAATG-QFGKIVV  152 (153)
T ss_dssp             TTTTTT-CEEEEEE
T ss_pred             hHHHCC-CEEEEEE
Confidence            899999 8766653

>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]

Probab=95.97  E-value=0.0081  Score=38.81  Aligned_cols=56  Identities=13%  Similarity=0.151  Sum_probs=38.5

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCc---ccCcccCC-----------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNL---WSYLRCDI-----------GWQPYYFACDERGGLHWRDGRMKFMVL  111 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~---~~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V~  111 (119)
                      -++++||++.|......    .|+|......   ..|++=..           ++|.|+|.|..    |  .| |+-.|.
T Consensus        36 i~V~~GdtV~f~N~d~~----~H~v~~~~~~~~~~~f~s~~~~~~~~~~~tf~~~G~y~y~C~~----H--~~-M~G~I~  104 (106)
T d1id2a_          36 VTIKAGETVYWVNGEVM----PHNVAFKKGIVGEDAFRGEMMTKDQAYAITFNEAGSYDYFCTP----H--PF-MRGKVI  104 (106)
T ss_dssp             EEECTTCEEEEEECSSS----CBCCEECTTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSS----C--TT-CEEEEE
T ss_pred             EEECCCCEEEEEECCCC----ceeEEeccccCCcccccccccCCCceEEEecCCCeEEEEEccC----C--CC-CEEEEE
Confidence            47789999999876542    6998765221   12333211           99999999985    5  47 988876


Q ss_pred             e
Q 041261          112 P  112 (119)
Q Consensus       112 p  112 (119)
                      +
T Consensus       105 V  105 (106)
T d1id2a_         105 V  105 (106)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Methylomonas sp. j [TaxId: 32038]

Probab=94.39  E-value=0.043  Score=37.00  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=18.5

Q ss_pred             CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261           85 GWQPYYFACDERGGLHWRDGRMKFMVL  111 (119)
Q Consensus        85 ~~G~~YFiCg~~~g~HC~~G~mKl~V~  111 (119)
                      ++|.|-|+|++|  +|= .| |+=.|.
T Consensus       104 ~~G~Y~f~Ct~P--GH~-~g-M~G~l~  126 (129)
T d1cuoa_         104 KDEAYTYFCSYP--GHF-SM-MRGTLK  126 (129)
T ss_dssp             TTSCEEEECCST--TCT-TT-SEEEEE
T ss_pred             CCceEEEEeCCC--Ccc-cC-cEEEEE
Confidence            489999999999  995 88 874443

>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Red copper protein nitrosocyanin
species: Nitrosomonas europaea [TaxId: 915]

Probab=91.31  E-value=0.13  Score=33.24  Aligned_cols=60  Identities=7%  Similarity=-0.062  Sum_probs=35.4

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcccCc------ccCC-----CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYL------RCDI-----GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~------~C~~-----~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      -++++||.+.|...+. +.+ .|++..- ....-.      ....     ++|.|+|.|..    ||..+.|+-.|.+
T Consensus        40 i~v~~Gd~V~~~~~n~-d~~-~H~~~i~-~~~~~~~~~pG~t~~~~f~~~~~G~y~y~C~~----~~~~~~M~G~i~V  110 (112)
T d1ibya_          40 LVVKKGDAVKVVVENK-SPI-SEGFSID-AFGVQEVIKAGETKTISFTADKAGAFTIWCQL----HPKNIHLPGTLNV  110 (112)
T ss_dssp             EEEETTCEEEEEEEEC-SSS-CEEEEEG-GGTEEEEECTTCEEEEEEECCSCEEEEEBCSS----SCTTTBCCEEEEE
T ss_pred             EEEeCCCEEEEEEEeC-CCC-ceeeeec-ccccccccCCcceEEEEEEeccceEEEEECcc----cChhhcCeEEEEE
Confidence            5778899998877532 212 4776532 211100      0011     99999999996    5764437666554

>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=87.33  E-value=0.54  Score=31.33  Aligned_cols=60  Identities=13%  Similarity=0.039  Sum_probs=34.4

Q ss_pred             CCeEeCcEEEEEeCCC--CCCccccceEEecCcccCcccCC-----------CCcceEEEccCCCCCCCCCC--cceEEE
Q 041261           46 APFYVNDVLVFKYDPP--NDTVFPHSEYLLPNLWSYLRCDI-----------GWQPYYFACDERGGLHWRDG--RMKFMV  110 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~--~~~~~~h~V~~V~~~~~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G--~mKl~V  110 (119)
                      -++++||.+.|.-...  +..+ .|+.... ...--..-..           +||.|+|.|+..    |-.|  .|+-.|
T Consensus        53 i~V~~Gd~V~~~vtn~~~s~Dv-~H~f~ip-~~~v~~~~~PG~t~~~~f~~~~~G~y~~~C~~~----cg~~H~~M~g~i  126 (131)
T d1qnia1          53 FKVKEGDEVTVYITNLDMVEDV-THGFCMV-NHGVSMEISPQQTASVTFTAGKPGVYWYYCNWF----CHALHMEMVGRM  126 (131)
T ss_dssp             EEEETTCEEEEEEEECCCSTTC-CEEEEET-TTTEEEEECTTCEEEEEEECCSSEEEEEECCSC----CSTTGGGCEEEE
T ss_pred             EEecCCCEEEEEEEccCCCCcc-eEEEEEe-ccCcccccCCCceEEEEEEcCCCEEEEEECccc----cCcchhcCeeEE
Confidence            4677899999987531  1112 3665443 2111000111           999999999976    6554  487444


Q ss_pred             E
Q 041261          111 L  111 (119)
Q Consensus       111 ~  111 (119)
                      .
T Consensus       127 ~  127 (131)
T d1qnia1         127 L  127 (131)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]

Probab=86.35  E-value=0.25  Score=32.90  Aligned_cols=24  Identities=21%  Similarity=0.116  Sum_probs=19.1

Q ss_pred             CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261           85 GWQPYYFACDERGGLHWRDGRMKFMVLP  112 (119)
Q Consensus        85 ~~G~~YFiCg~~~g~HC~~G~mKl~V~p  112 (119)
                      ++|.|-|+|++|  +| ..| |+=.|.+
T Consensus       104 ~~G~Y~f~Ct~P--GH-~~g-M~G~l~V  127 (129)
T d2ccwa1         104 AGENYAYFCSFP--GH-WAM-MKGTLKL  127 (129)
T ss_dssp             TTCCEEEECCST--TG-GGT-SEEEEEE
T ss_pred             CCccEEEEeCCC--Ch-hhC-cEEEEEE
Confidence            479999999999  99 588 8755443

>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.31  E-value=0.75  Score=30.53  Aligned_cols=60  Identities=12%  Similarity=0.051  Sum_probs=33.9

Q ss_pred             CeEeCcEEEEEeCCCCCC-ccccceEEecCcc-cC-------cccCC---CCcceEEEccCCCCCCCC---CCcceEEEE
Q 041261           47 PFYVNDVLVFKYDPPNDT-VFPHSEYLLPNLW-SY-------LRCDI---GWQPYYFACDERGGLHWR---DGRMKFMVL  111 (119)
Q Consensus        47 ~F~vGD~LvF~Y~~~~~~-~~~h~V~~V~~~~-~Y-------~~C~~---~~G~~YFiCg~~~g~HC~---~G~mKl~V~  111 (119)
                      +++.||.+.|...+..+. -..|..... ... ..       ....+   ++|.|+|.|+..    |-   .| |+-.|.
T Consensus        55 ~V~~Gd~V~~~ltN~d~~~~v~H~~~i~-~~~~~~~~~PG~~~~~~F~a~~~G~y~~~C~~~----cg~~H~~-M~G~ii  128 (132)
T d1fwxa1          55 TVKEGDEVTVIVTNLDEIDDLTHGFTMG-NYGVAMEIGPQMTSSVTFVAANPGVYWYYCQWF----CHALHME-MRGRML  128 (132)
T ss_dssp             EEETTCEEEEEEEECCCSTTCCEEEEET-TTTEEEEECTTCEEEEEEECCSCEEEEEECCSC----CSTTCTT-CEEEEE
T ss_pred             EEcCCCEEEEEEEcCCCCccceEeechh-hhccccccCCCEEEEEEEeCCCCeEEEEECccc----cCcchhc-CEEEEE
Confidence            456699999988643211 013554332 211 00       11122   899999999976    44   35 876665


Q ss_pred             e
Q 041261          112 P  112 (119)
Q Consensus       112 p  112 (119)
                      +
T Consensus       129 V  129 (132)
T d1fwxa1         129 V  129 (132)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Cytochrome c oxidase
species: Thermus thermophilus, ba3 type [TaxId: 274]

Probab=82.33  E-value=1.6  Score=28.56  Aligned_cols=59  Identities=19%  Similarity=0.130  Sum_probs=36.4

Q ss_pred             CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-----------CCcceEEEccCCCCCCCCCC--cceEEEEe
Q 041261           46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-----------GWQPYYFACDERGGLHWRDG--RMKFMVLP  112 (119)
Q Consensus        46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G--~mKl~V~p  112 (119)
                      -.+..||.+.|...+. | + .|+... ++...=..-..           ++|.|+|+|..-    |-.|  .|+-.|.+
T Consensus        49 l~vp~G~~V~~~lts~-D-V-~H~f~i-p~~~v~~d~~PG~~~~~~~~~~~~G~y~~~C~~~----CG~~H~~M~g~i~V  120 (122)
T d2cuaa_          49 IEVPQGAEIVFKITSP-D-V-IHGFHV-EGTNINVEVLPGEVSTVRYTFKRPGEYRIICNQY----CGLGHQNMFGTIVV  120 (122)
T ss_dssp             EEEETTSEEEEEEEBS-S-S-CEEEEE-TTSSCEEEECBTBCEEEEEECCSCEEEEEECCSC----CSTTSTTCEEEEEE
T ss_pred             EEEeCCCEEEEEEEcC-C-c-cceeEe-cCCCeeEEEecCceEEEEEEeccceeEEEEehhc----cCCCcccCeEEEEE
Confidence            5778899999998764 3 3 477544 22211000000           999999999973    5443  48766654