Citrus Sinensis ID: 041272
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 267 | 2.2.26 [Sep-21-2011] | |||||||
| O34614 | 194 | Putative rRNA methylase Y | yes | no | 0.689 | 0.948 | 0.348 | 3e-23 |
| >sp|O34614|YTQB_BACSU Putative rRNA methylase YtqB OS=Bacillus subtilis (strain 168) GN=ytqB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 99/201 (49%), Gaps = 17/201 (8%)
Query: 69 LCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL 128
L K P S L+ +AA +GD VVDAT GNG+DT + ++V + G VY
Sbjct: 3 LKKILPYSKELLKMAAG--------EGDIVVDATMGNGHDTQFLAELVGEN---GHVYAF 51
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPG 186
DIQ A+ +T L + LF+ H ++ E +P T ++ A FNLGYLPG
Sbjct: 52 DIQESAVANTKERL----GDMYQARTTLFHKSHDKIAESLPPETHGKVAAAVFNLGYLPG 107
Query: 187 GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246
GDKS+ T +T A+E I+ GLI +VVY GHP G+ E V F R L
Sbjct: 108 GDKSITTNGSSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCRDLDQQTAR 167
Query: 247 CCKFQMLNRPLAPVLVFLFKR 267
+ +N+ P + ++
Sbjct: 168 VLTYGFINQQNDPPFIVAIEK 188
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Bacillus subtilis (strain 168) (taxid: 224308) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 267 | ||||||
| 255544606 | 286 | S-adenosylmethionine-dependent methyltra | 0.700 | 0.653 | 0.748 | 2e-79 | |
| 224094180 | 203 | predicted protein [Populus trichocarpa] | 0.700 | 0.921 | 0.754 | 1e-78 | |
| 359494606 | 215 | PREDICTED: putative rRNA methylase ytqB | 0.700 | 0.869 | 0.737 | 2e-78 | |
| 297736150 | 259 | unnamed protein product [Vitis vinifera] | 0.700 | 0.722 | 0.737 | 4e-78 | |
| 356557016 | 285 | PREDICTED: putative rRNA methylase ytqB- | 0.737 | 0.691 | 0.655 | 2e-74 | |
| 147801353 | 285 | hypothetical protein VITISV_019132 [Viti | 0.677 | 0.635 | 0.729 | 8e-74 | |
| 30684861 | 274 | S-adenosyl-L-methionine-dependent methyl | 0.917 | 0.894 | 0.583 | 3e-72 | |
| 297844572 | 274 | hypothetical protein ARALYDRAFT_471841 [ | 0.700 | 0.682 | 0.682 | 2e-71 | |
| 449444276 | 265 | PREDICTED: putative rRNA methylase YtqB- | 0.700 | 0.705 | 0.679 | 1e-70 | |
| 242091049 | 272 | hypothetical protein SORBIDRAFT_09g02516 | 0.700 | 0.687 | 0.648 | 3e-67 |
| >gi|255544606|ref|XP_002513364.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223547272|gb|EEF48767.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 140/187 (74%), Positives = 163/187 (87%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VWKHV++KGDTVVDATCGNG+DTL +LKMVADES G VYG+DIQS+AL +TSS
Sbjct: 80 TEVAHLVWKHVLQKGDTVVDATCGNGHDTLALLKMVADESGNGHVYGMDIQSDALDNTSS 139
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
LLD+T + EK LVKLF++CHSRMEEIVP++T VRLVAFNLGYLPGGDK++ T E T +
Sbjct: 140 LLDETVTSEEKELVKLFSICHSRMEEIVPENTPVRLVAFNLGYLPGGDKAITTVPEKTLL 199
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
ALEAA+R+L+PGGLIS+VVYVGHPGGREELE VE FA L VDDWICCKFQMLNRP+APV
Sbjct: 200 ALEAAKRVLMPGGLISLVVYVGHPGGREELETVETFASGLPVDDWICCKFQMLNRPVAPV 259
Query: 261 LVFLFKR 267
+ FLFKR
Sbjct: 260 VAFLFKR 266
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224094180|ref|XP_002310087.1| predicted protein [Populus trichocarpa] gi|222852990|gb|EEE90537.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/187 (75%), Positives = 162/187 (86%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ +WK VV+ GDTV+DATCGNGYDTL MLKMVADE G VYG+DIQ +ALK TSS
Sbjct: 17 TEVAHLIWKRVVQNGDTVIDATCGNGYDTLAMLKMVADELGRGRVYGMDIQGDALKRTSS 76
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
LLD++ + EK LVKLF++CHSRMEEIVP ++ VRLVAFNLGYLPGGDK++ T SETT++
Sbjct: 77 LLDESVTLKEKELVKLFSICHSRMEEIVPANSPVRLVAFNLGYLPGGDKTITTASETTQL 136
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
ALEAA++ILIPGGLIS+VVYVGHPGG EELE VEAFA LSVD+WICCKFQMLNRPLAPV
Sbjct: 137 ALEAAKKILIPGGLISLVVYVGHPGGMEELETVEAFASGLSVDNWICCKFQMLNRPLAPV 196
Query: 261 LVFLFKR 267
LV LFKR
Sbjct: 197 LVLLFKR 203
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494606|ref|XP_002263914.2| PREDICTED: putative rRNA methylase ytqB [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 138/187 (73%), Positives = 162/187 (86%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VWKHVV+KGDTVVDATCGNGYDTL MLKMVAD S GCVYG+DIQ +AL++TSS
Sbjct: 29 TRVAHLVWKHVVQKGDTVVDATCGNGYDTLAMLKMVADGSGRGCVYGMDIQKDALENTSS 88
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
LL+++ + EK LVKLF +CHSRMEE+VPKST +RLVAFNLGYLPGGDK V TTS TT +
Sbjct: 89 LLNESVNPIEKELVKLFTICHSRMEEVVPKSTTLRLVAFNLGYLPGGDKEVTTTSATTIL 148
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
AL+AA RIL GGLIS++VYVGHPGGR+ELE ++AFA LSV+DW+C +FQMLNRPLAPV
Sbjct: 149 ALQAATRILASGGLISLIVYVGHPGGRDELETIQAFASELSVEDWVCSEFQMLNRPLAPV 208
Query: 261 LVFLFKR 267
L+FLFKR
Sbjct: 209 LIFLFKR 215
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736150|emb|CBI24188.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 138/187 (73%), Positives = 162/187 (86%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VWKHVV+KGDTVVDATCGNGYDTL MLKMVAD S GCVYG+DIQ +AL++TSS
Sbjct: 73 TRVAHLVWKHVVQKGDTVVDATCGNGYDTLAMLKMVADGSGRGCVYGMDIQKDALENTSS 132
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
LL+++ + EK LVKLF +CHSRMEE+VPKST +RLVAFNLGYLPGGDK V TTS TT +
Sbjct: 133 LLNESVNPIEKELVKLFTICHSRMEEVVPKSTTLRLVAFNLGYLPGGDKEVTTTSATTIL 192
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
AL+AA RIL GGLIS++VYVGHPGGR+ELE ++AFA LSV+DW+C +FQMLNRPLAPV
Sbjct: 193 ALQAATRILASGGLISLIVYVGHPGGRDELETIQAFASELSVEDWVCSEFQMLNRPLAPV 252
Query: 261 LVFLFKR 267
L+FLFKR
Sbjct: 253 LIFLFKR 259
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557016|ref|XP_003546814.1| PREDICTED: putative rRNA methylase ytqB-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/209 (65%), Positives = 166/209 (79%), Gaps = 12/209 (5%)
Query: 71 KDSPLSG---TLI---------TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVAD 118
KDSP SG L+ T A+ VWKHVV+KGDTV+DATCGNG+DTL ML +VAD
Sbjct: 77 KDSPFSGLEDALVSYLFGKKRATDIAHMVWKHVVQKGDTVIDATCGNGFDTLAMLNLVAD 136
Query: 119 ESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA 178
+S GCVY LDIQ +AL +TS LL+++ + EK LVKLFN+CHS+ME VP++ + RLVA
Sbjct: 137 DSHNGCVYALDIQKDALDNTSLLLEESLNPNEKQLVKLFNICHSKMENAVPRNASFRLVA 196
Query: 179 FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFAR 238
FNLGYLPGGDK +IT S+TT +ALEAA+RIL+PGGLIS+VVYVGHPGGREELE VE+FA
Sbjct: 197 FNLGYLPGGDKEIITRSKTTLLALEAAKRILMPGGLISIVVYVGHPGGREELEVVESFAG 256
Query: 239 SLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L V++WICCK QMLNRP AP+ +FLFKR
Sbjct: 257 RLCVENWICCKLQMLNRPCAPIPIFLFKR 285
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147801353|emb|CAN63608.1| hypothetical protein VITISV_019132 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 132/181 (72%), Positives = 155/181 (85%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VWKHVV+KGDTVVDATCGNGYDTL MLKMVAD S GCVYG+DIQ +AL++TSS
Sbjct: 73 TRVAHLVWKHVVQKGDTVVDATCGNGYDTLAMLKMVADGSGRGCVYGMDIQKDALENTSS 132
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
LL+++ + EK LVKLF +CHSRMEE+VPKST +RLVAFNLGYLPGGDK V TTS TT +
Sbjct: 133 LLNESVNPIEKELVKLFTICHSRMEEVVPKSTTLRLVAFNLGYLPGGDKEVTTTSATTIL 192
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
AL+AA RIL GGLIS++VYVGHPGGR+ELE ++AFA LSV+DW+C +FQMLNRPLAP
Sbjct: 193 ALQAATRILASGGLISLIVYVGHPGGRDELETIQAFASELSVEDWVCSEFQMLNRPLAPE 252
Query: 261 L 261
L
Sbjct: 253 L 253
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30684861|ref|NP_683312.2| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|26983794|gb|AAN86149.1| unknown protein [Arabidopsis thaliana] gi|332191331|gb|AEE29452.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/259 (58%), Positives = 182/259 (70%), Gaps = 14/259 (5%)
Query: 17 SFAIP-RNTLLPFPAAALSKANVNVLRFSSSCCSAASFQQKQSCSTNNCTPLPLCKDSPL 75
S+++P R TL+ F + N LR SC A+F S S N P+ +D
Sbjct: 20 SYSLPIRKTLMTFDFRIAMQRN-PCLRIRRSC--VAAFSSTPSHSRN--FPIRGLEDV-F 73
Query: 76 SGTLI-----TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSA--GCVYGL 128
G L T A+ VW+ V++KGDTV+DATCGNG DTL MLKMV +S G VY +
Sbjct: 74 VGYLFGRKKATEVAHVVWEQVIQKGDTVIDATCGNGNDTLAMLKMVMHDSVGCGGYVYAM 133
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGD 188
DIQ +A++STSSLLD+ EK VKLFN+CHS+M EIVP++ VR+VAFNLGYLPGG+
Sbjct: 134 DIQKDAIESTSSLLDQAVGSKEKECVKLFNLCHSKMGEIVPENARVRMVAFNLGYLPGGN 193
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
KS+IT S+TT AL+AAERIL PGGLIS+VVY+GHPGGREELE VEAF L V DWICC
Sbjct: 194 KSIITLSDTTLSALKAAERILKPGGLISLVVYIGHPGGREELEVVEAFGSGLPVSDWICC 253
Query: 249 KFQMLNRPLAPVLVFLFKR 267
KFQMLNRPLAPVLVF+FKR
Sbjct: 254 KFQMLNRPLAPVLVFMFKR 272
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844572|ref|XP_002890167.1| hypothetical protein ARALYDRAFT_471841 [Arabidopsis lyrata subsp. lyrata] gi|297336009|gb|EFH66426.1| hypothetical protein ARALYDRAFT_471841 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 129/189 (68%), Positives = 156/189 (82%), Gaps = 2/189 (1%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSA--GCVYGLDIQSEALKST 138
T A+ VW+ V++KGD V+DATCGNG DTL MLKMV ++S G VY +DIQ +A++ST
Sbjct: 84 TEVAHVVWEQVIQKGDMVIDATCGNGNDTLAMLKMVMNDSVGCGGYVYAMDIQKDAIEST 143
Query: 139 SSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETT 198
SSLLD+ EK VKLFN+CHS+M EIVP+++ VR+VAFNLGYLPGG+KS+IT S+TT
Sbjct: 144 SSLLDQAVGSKEKECVKLFNICHSKMGEIVPENSRVRMVAFNLGYLPGGNKSIITVSDTT 203
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
AL+AAERIL+PGGLIS+VVY+GHPGGREELE VEAF L V DW+CCKFQMLNRPLA
Sbjct: 204 LSALKAAERILMPGGLISLVVYIGHPGGREELEVVEAFGSGLPVSDWVCCKFQMLNRPLA 263
Query: 259 PVLVFLFKR 267
PVLVF+FKR
Sbjct: 264 PVLVFMFKR 272
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444276|ref|XP_004139901.1| PREDICTED: putative rRNA methylase YtqB-like [Cucumis sativus] gi|449516207|ref|XP_004165139.1| PREDICTED: putative rRNA methylase YtqB-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 127/187 (67%), Positives = 157/187 (83%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VWK +V+KGDTVVDATCGNGYDTL M+KMVADES + VY +D+Q+EAL+STS+
Sbjct: 79 TEVAHSVWKCIVKKGDTVVDATCGNGYDTLAMVKMVADESGSARVYAMDVQNEALESTSA 138
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
LLD++ S+ EK LVKL ++CHSRME+++ + + V LVAFNLGYLPGG+K++ T SETT
Sbjct: 139 LLDESLSEKEKKLVKLSSICHSRMEDVILEDSPVSLVAFNLGYLPGGNKAITTKSETTFQ 198
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
AL+AA RIL PGGLIS+VVYVGHPGG EELE +E F+ L+V++WICCK QMLNRPLAPV
Sbjct: 199 ALKAAHRILKPGGLISLVVYVGHPGGMEELETIEKFSSDLAVENWICCKLQMLNRPLAPV 258
Query: 261 LVFLFKR 267
VFLFKR
Sbjct: 259 PVFLFKR 265
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242091049|ref|XP_002441357.1| hypothetical protein SORBIDRAFT_09g025160 [Sorghum bicolor] gi|241946642|gb|EES19787.1| hypothetical protein SORBIDRAFT_09g025160 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 122/188 (64%), Positives = 152/188 (80%), Gaps = 1/188 (0%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VW+++V+KGDTVVDATCGNG DTL +LKMVADE++ G VYG+DIQ A++STSS
Sbjct: 85 TEVAHAVWRNIVQKGDTVVDATCGNGNDTLALLKMVADETAQGRVYGMDIQDSAIESTSS 144
Query: 141 LLDKTTSK-AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
L + ++GLVKLF +CHSRMEEIVPK VRLVAFNLGYLPGGDK+VIT TT+
Sbjct: 145 FLKMSVDDDHQRGLVKLFPICHSRMEEIVPKDAPVRLVAFNLGYLPGGDKTVITVPRTTE 204
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
+AL+AA ++L GGLIS++VY+GHPGGR+EL+ VE+FA SL VD W CK QMLNRP+AP
Sbjct: 205 LALQAASKLLSSGGLISVLVYIGHPGGRDELDVVESFASSLPVDTWATCKLQMLNRPIAP 264
Query: 260 VLVFLFKR 267
VL+ L K+
Sbjct: 265 VLILLNKK 272
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 267 | ||||||
| TAIR|locus:504956221 | 274 | AT1G16445 "AT1G16445" [Arabido | 0.696 | 0.678 | 0.657 | 1.1e-62 | |
| UNIPROTKB|Q74FB9 | 189 | GSU0690 "rRNA methyltransferas | 0.610 | 0.862 | 0.430 | 1.3e-27 | |
| TIGR_CMR|GSU_0690 | 189 | GSU_0690 "conserved hypothetic | 0.610 | 0.862 | 0.430 | 1.3e-27 | |
| UNIPROTKB|Q3AAN3 | 200 | CHY_1982 "Putative uncharacter | 0.640 | 0.855 | 0.377 | 2.9e-25 | |
| TIGR_CMR|CHY_1982 | 200 | CHY_1982 "conserved hypothetic | 0.640 | 0.855 | 0.377 | 2.9e-25 | |
| UNIPROTKB|Q71Z05 | 192 | LMOf2365_1686 "Putative unchar | 0.659 | 0.916 | 0.356 | 5.9e-25 | |
| UNIPROTKB|Q81KJ5 | 190 | BAS4647 "Uncharacterized prote | 0.666 | 0.936 | 0.331 | 7e-22 | |
| TIGR_CMR|BA_5002 | 190 | BA_5002 "conserved hypothetica | 0.666 | 0.936 | 0.331 | 7e-22 | |
| UNIPROTKB|Q97RY1 | 185 | SP_0652 "Putative uncharacteri | 0.610 | 0.881 | 0.372 | 7.2e-20 |
| TAIR|locus:504956221 AT1G16445 "AT1G16445" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 125/190 (65%), Positives = 145/190 (76%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGC---VYGLDIQSEAXXX 137
T A+ VW+ V++KGDTV+DATCGNG DTL MLKMV +S GC VY +DIQ +A
Sbjct: 84 TEVAHVVWEQVIQKGDTVIDATCGNGNDTLAMLKMVMHDS-VGCGGYVYAMDIQKDAIES 142
Query: 138 XXXXXXXXXXXAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
EK VKLFN+CHS+M EIVP++ VR+VAFNLGYLPGG+KS+IT S+T
Sbjct: 143 TSSLLDQAVGSKEKECVKLFNLCHSKMGEIVPENARVRMVAFNLGYLPGGNKSIITLSDT 202
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
T AL+AAERIL PGGLIS+VVY+GHPGGREELE VEAF L V DWICCKFQMLNRPL
Sbjct: 203 TLSALKAAERILKPGGLISLVVYIGHPGGREELEVVEAFGSGLPVSDWICCKFQMLNRPL 262
Query: 258 APVLVFLFKR 267
APVLVF+FKR
Sbjct: 263 APVLVFMFKR 272
|
|
| UNIPROTKB|Q74FB9 GSU0690 "rRNA methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 74/172 (43%), Positives = 99/172 (57%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAXXXXXXXXXXXXXXAEK 151
V+ GD VVDATCGNG+DTL + ++V E G V+ DIQ +A E+
Sbjct: 20 VKPGDRVVDATCGNGHDTLFLAELVGPE---GRVWAFDIQ-DAALAATAKRLEAAGCGER 75
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V+L N H R+ E+VP V V FNLG+LPG + ITT TT AL+ A +L+P
Sbjct: 76 --VELVNGGHERLAELVPGP--VTAVVFNLGFLPGAENGTITTPATTGAALDQATELLLP 131
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLV 262
GG++++ VY GHPGG EE AV+A+A SL + + + NR AP LV
Sbjct: 132 GGIVTVAVYTGHPGGPEEEAAVDAWAASLPPARFNVWRCRQGNRSSAAPYLV 183
|
|
| TIGR_CMR|GSU_0690 GSU_0690 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 74/172 (43%), Positives = 99/172 (57%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAXXXXXXXXXXXXXXAEK 151
V+ GD VVDATCGNG+DTL + ++V E G V+ DIQ +A E+
Sbjct: 20 VKPGDRVVDATCGNGHDTLFLAELVGPE---GRVWAFDIQ-DAALAATAKRLEAAGCGER 75
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V+L N H R+ E+VP V V FNLG+LPG + ITT TT AL+ A +L+P
Sbjct: 76 --VELVNGGHERLAELVPGP--VTAVVFNLGFLPGAENGTITTPATTGAALDQATELLLP 131
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLV 262
GG++++ VY GHPGG EE AV+A+A SL + + + NR AP LV
Sbjct: 132 GGIVTVAVYTGHPGGPEEEAAVDAWAASLPPARFNVWRCRQGNRSSAAPYLV 183
|
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| UNIPROTKB|Q3AAN3 CHY_1982 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 68/180 (37%), Positives = 96/180 (53%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAXXXXXXXXXXXXXX 148
+ VV+ GD VDAT GNG DTL + V + G VY DIQ +A
Sbjct: 16 QEVVQAGDVAVDATAGNGNDTLFLAHRVGEN---GKVYAFDIQEQALKITEQKLKEAGV- 71
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
AE+ + L + H ++ + V ++ FNLGYLPGGDKS++T TT L ++
Sbjct: 72 AERAVFILDS--HEKVLKYV--RVPIKAAVFNLGYLPGGDKSIVTKPSTTITGLAECYKL 127
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA-PVLVFLFKR 267
L+PGG+I++ VYVGH GG EE +E F++ + + K + LNRP P L + KR
Sbjct: 128 LLPGGIITVTVYVGHAGGEEERMVIEEFSQKIPDREGYVIKHEFLNRPQTYPKLYIIGKR 187
|
|
| TIGR_CMR|CHY_1982 CHY_1982 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 68/180 (37%), Positives = 96/180 (53%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAXXXXXXXXXXXXXX 148
+ VV+ GD VDAT GNG DTL + V + G VY DIQ +A
Sbjct: 16 QEVVQAGDVAVDATAGNGNDTLFLAHRVGEN---GKVYAFDIQEQALKITEQKLKEAGV- 71
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
AE+ + L + H ++ + V ++ FNLGYLPGGDKS++T TT L ++
Sbjct: 72 AERAVFILDS--HEKVLKYV--RVPIKAAVFNLGYLPGGDKSIVTKPSTTITGLAECYKL 127
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA-PVLVFLFKR 267
L+PGG+I++ VYVGH GG EE +E F++ + + K + LNRP P L + KR
Sbjct: 128 LLPGGIITVTVYVGHAGGEEERMVIEEFSQKIPDREGYVIKHEFLNRPQTYPKLYIIGKR 187
|
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| UNIPROTKB|Q71Z05 LMOf2365_1686 "Putative uncharacterized protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 66/185 (35%), Positives = 102/185 (55%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAXXXXXXXXX 143
A+ + VVR GD V+DATCGNG+DTL++ ++V G V G DIQ A
Sbjct: 10 AHDTLRKVVRPGDYVIDATCGNGHDTLLLAELVGIN---GHVLGFDIQQMAVDETKARLE 66
Query: 144 XXXXXAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++ V+L H+R+ S VR FNLGYLPGGDK + TT+++T ++
Sbjct: 67 NAGVSSQ---VELVCASHARIPAYT--SRPVRAAIFNLGYLPGGDKEITTTADSTLESIG 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLV 262
++L GG++ +V+Y GHP G+ E +AV F ++ D+ +Q +N+ AP ++
Sbjct: 122 HLMQLLEVGGVVILVIYHGHPAGKIEKDAVVTFCEAIPQQDFHVLSYQFINQKNDAPFVI 181
Query: 263 FLFKR 267
+ KR
Sbjct: 182 IIEKR 186
|
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| UNIPROTKB|Q81KJ5 BAS4647 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 62/187 (33%), Positives = 96/187 (51%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAXXXXXXXXX 143
A + + V++GD VDAT GNG+DT + ++V D +G V+G DIQ EA
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGD---SGKVFGFDIQKEAIESSTTRLK 66
Query: 144 XXXXXAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMA 201
LV + H + ++P+ ++ FNLGYLPGGDK ++T +T A
Sbjct: 67 EKELFERTVLV---HDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNSTISA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APV 260
+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P
Sbjct: 124 IEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNNPPF 183
Query: 261 LVFLFKR 267
+V + KR
Sbjct: 184 IVAIEKR 190
|
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| TIGR_CMR|BA_5002 BA_5002 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 62/187 (33%), Positives = 96/187 (51%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAXXXXXXXXX 143
A + + V++GD VDAT GNG+DT + ++V D +G V+G DIQ EA
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGD---SGKVFGFDIQKEAIESSTTRLK 66
Query: 144 XXXXXAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMA 201
LV + H + ++P+ ++ FNLGYLPGGDK ++T +T A
Sbjct: 67 EKELFERTVLV---HDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNSTISA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APV 260
+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P
Sbjct: 124 IEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNNPPF 183
Query: 261 LVFLFKR 267
+V + KR
Sbjct: 184 IVAIEKR 190
|
|
| UNIPROTKB|Q97RY1 SP_0652 "Putative uncharacterized protein" [Streptococcus pneumoniae TIGR4 (taxid:170187)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 66/177 (37%), Positives = 91/177 (51%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAXXXXXXXXXXXXXXAE 150
VV K D VVDAT GNG+DTL + K+ VY DIQ +A A+
Sbjct: 15 VVTKEDVVVDATMGNGHDTLFLAKLAKQ------VYAFDIQKQALEKTQERLHQ----AD 64
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
+L H +++ V K+ A FNLGYLP DKSVIT +TT ALE +L+
Sbjct: 65 LTNAQLILQGHETLDQFVIKAKAG---IFNLGYLPAADKSVITRPQTTIEALEKLCGLLV 121
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFK 266
GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P LV + K
Sbjct: 122 KGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPFLVMIEK 178
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 267 235 0.00088 113 3 11 22 0.38 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 603 (64 KB)
Total size of DFA: 174 KB (2101 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.08u 0.13s 16.21t Elapsed: 00:00:01
Total cpu time: 16.08u 0.13s 16.21t Elapsed: 00:00:01
Start: Fri May 10 05:42:33 2013 End: Fri May 10 05:42:34 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.VII.2576.1 | hypothetical protein (203 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00141227 | hypothetical protein (256 aa) | • | 0.519 | |||||||
 | eugene3.143650001 | hypothetical protein (163 aa) | • | 0.468 | |||||||
 | DHQS6 | SubName- Full=Putative uncharacterized protein; (375 aa) | • | 0.404 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 267 | |||
| pfam06962 | 138 | pfam06962, rRNA_methylase, Putative rRNA methylase | 2e-56 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 4e-07 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 6e-04 |
| >gnl|CDD|191653 pfam06962, rRNA_methylase, Putative rRNA methylase | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 2e-56
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 125 VYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYL 184
VY DIQ EAL++T L++ V+L H ++E +P+ V+ FNLGYL
Sbjct: 2 VYAFDIQEEALENTKEKLEQAGLSE----VELILDSHENIDEYIPEP--VKAAIFNLGYL 55
Query: 185 PGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDD 244
PGGDKS+ T +TT A++ +L PGGLI +V+Y GH G++E +AV F +L
Sbjct: 56 PGGDKSITTKPDTTLEAIKKLLELLKPGGLIILVIYHGHEEGKKEKDAVLDFVSNLDQKK 115
Query: 245 WICCKFQMLNRPLAPVLVFLFKR 267
W ++Q +N+ AP + ++
Sbjct: 116 WNVLQYQFINQVNAPPFLIAIEK 138
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This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins. Length = 138 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-07
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 16/139 (11%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG 152
+ G V+D CG GY T ++ + + + V G+DI EA++ K A+K
Sbjct: 2 KSGIKVLDLGCGTGYLTFILAEKLGPGAE---VVGIDISEEAIE-------KAKENAKKL 51
Query: 153 LVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
+ +EE+ + +F++ V+ LE R+L PG
Sbjct: 52 GYENVEFIQGDIEEL--PQLQLEDNSFDVVI----SNEVLNHLPDPDKVLEEIIRVLKPG 105
Query: 213 GLISMVVYVGHPGGREELE 231
G++ + V LE
Sbjct: 106 GVLIVSDPVLLSELPALLE 124
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This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 6e-04
Identities = 30/126 (23%), Positives = 44/126 (34%), Gaps = 12/126 (9%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GD V+D G+G L A V G+++ EA L A GL
Sbjct: 1 GDRVLDPGAGSGA----FLLAAARAGPDARVVGVELDPEAAALARRRL------ALAGLA 50
Query: 155 KLFNMCHSRMEEIVPKSTA-VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
+ E++ LV N Y P + L AA R+L PGG
Sbjct: 51 PRVRVVVGDARELLELPDGSFDLVLGNPPYGPRA-GDPKDNRDLYDRFLAAALRLLKPGG 109
Query: 214 LISMVV 219
++ ++
Sbjct: 110 VLVVIT 115
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This family contains methyltransferase domains. Length = 117 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 267 | |||
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 99.92 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.82 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.78 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.77 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.76 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.76 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.75 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.74 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.74 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.74 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.73 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.72 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.72 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.72 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.72 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.71 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.71 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.71 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.7 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.7 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.69 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.69 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.69 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.69 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.69 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.69 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.68 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.68 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.67 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.67 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.67 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.66 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.66 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.65 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.65 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.65 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.65 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.65 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.65 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.65 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.64 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.64 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.64 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.64 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.63 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.62 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.62 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.62 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.62 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.61 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.61 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.61 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.61 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.61 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.6 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.6 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.59 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.59 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.59 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.59 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.59 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.59 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.59 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.59 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.58 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.58 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.58 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.58 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.58 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.58 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.57 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.57 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.56 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.56 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.56 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.55 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.55 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.55 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.55 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.54 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.54 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.54 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.54 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.54 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.54 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.54 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.54 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.54 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.53 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.53 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.53 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.53 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.53 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.53 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.52 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.52 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.52 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.51 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.51 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.51 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.5 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.5 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.5 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.49 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.49 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.49 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.49 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.48 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.47 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.46 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.44 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.44 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.44 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.44 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.43 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.42 | |
| PLN02476 | 278 | O-methyltransferase | 99.42 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.42 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.42 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.42 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.41 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 99.41 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.41 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.4 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.4 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.4 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.39 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.38 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.38 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.37 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.36 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.36 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.35 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.35 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 99.34 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.33 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.33 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.33 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.33 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.32 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.32 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.31 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.3 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.28 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.28 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.28 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.28 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.27 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.27 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.27 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.25 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 99.24 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.24 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.24 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.23 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.22 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.21 | |
| PLN02366 | 308 | spermidine synthase | 99.2 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.2 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.19 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.17 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.16 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.15 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.15 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 99.15 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.13 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.13 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.13 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.12 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.12 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.11 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.1 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.1 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 99.09 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 99.09 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.06 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.04 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.04 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 99.02 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 99.01 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.99 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.98 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.96 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.95 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.95 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.94 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 98.93 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.89 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.88 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.88 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.88 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 98.87 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.86 | |
| PLN02823 | 336 | spermine synthase | 98.85 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.84 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.84 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.83 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.82 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.82 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.78 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.77 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.77 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.76 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.74 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.74 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.73 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.71 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.69 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.69 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.68 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.65 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.64 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.64 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.62 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.61 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.6 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.59 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.56 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.54 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.52 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.46 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.42 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.42 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.39 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.38 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.38 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.36 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.35 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.34 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.33 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.26 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.23 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.2 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.19 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.19 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.18 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.17 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.17 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.16 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.13 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.12 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.12 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.11 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 98.09 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.05 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.04 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.03 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.96 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.96 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.94 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.92 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.91 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.89 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 97.85 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.81 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.81 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.78 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.68 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.63 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.62 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.59 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.52 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.52 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.51 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 97.49 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 97.48 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.46 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.44 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.37 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 97.32 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.27 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.26 | |
| PRK13699 | 227 | putative methylase; Provisional | 97.17 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 97.15 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 97.13 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.12 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.09 | |
| PHA01634 | 156 | hypothetical protein | 97.03 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.88 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.85 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.78 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.77 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 96.72 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.72 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 96.68 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.67 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 96.66 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.63 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 96.6 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.59 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 96.45 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 96.42 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 96.41 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 96.32 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.23 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 96.19 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 96.07 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.04 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 95.95 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 95.94 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.93 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 95.89 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 95.83 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 95.7 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.69 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 95.69 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 95.68 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 95.65 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 95.61 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 95.57 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.55 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 95.44 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.36 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 95.35 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 95.3 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.2 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 95.1 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 95.08 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 95.06 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 95.01 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 95.0 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 94.97 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 94.94 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 94.93 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 94.9 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 94.86 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 94.8 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 94.77 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 94.72 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 94.69 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 94.66 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 94.62 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 94.53 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.53 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 94.52 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 94.46 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.46 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 94.44 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 94.41 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 94.36 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 94.36 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.31 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 94.31 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 94.26 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 94.26 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 94.23 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 94.21 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 94.18 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 94.06 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 94.02 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 93.75 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 93.73 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 93.66 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 93.6 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 93.5 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 93.49 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 93.35 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 93.32 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 93.25 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 93.21 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 93.2 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 93.2 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 93.18 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 93.13 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 92.87 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 92.86 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 92.84 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 92.7 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 92.69 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 92.65 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 92.39 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 92.38 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 92.32 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 91.91 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 91.85 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 91.76 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 91.61 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 91.53 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 91.43 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 91.36 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 91.06 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 91.02 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 91.02 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 90.88 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 90.84 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 90.79 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 90.72 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 90.69 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 90.64 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.61 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.58 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 90.32 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 90.29 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 90.24 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 90.12 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 90.06 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 90.02 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 89.93 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 89.88 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 89.85 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 89.77 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 89.65 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.63 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.51 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 89.5 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.48 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.46 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.44 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 89.29 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 89.23 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 89.19 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 89.19 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 89.17 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 89.15 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 89.04 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 88.96 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 88.84 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.83 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.65 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 88.63 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 88.59 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 88.52 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 88.46 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 88.34 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 88.22 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 88.16 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 88.14 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 88.04 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 88.03 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 88.0 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 87.98 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 87.96 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 87.91 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 87.9 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 87.82 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.78 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.76 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 87.63 | |
| PLN02494 | 477 | adenosylhomocysteinase | 87.61 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.6 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 87.52 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 87.3 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 87.26 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 87.21 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 87.16 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 87.15 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 87.15 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.15 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 86.85 | |
| PRK08643 | 256 | acetoin reductase; Validated | 86.75 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 86.72 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 86.71 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 86.7 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 86.51 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 86.49 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 86.37 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 86.22 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 86.15 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 86.07 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 86.03 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 85.79 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 85.71 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 85.58 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 85.54 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 85.53 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 85.35 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 85.3 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 85.26 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 85.24 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 85.22 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 85.03 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 85.03 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.97 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 84.79 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.79 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 84.78 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 84.72 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 84.65 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 84.64 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 84.51 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 84.43 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 84.43 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 84.37 | |
| cd08264 | 325 | Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam | 84.33 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 84.31 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provision | 84.24 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 84.22 | |
| cd08258 | 306 | Zn_ADH4 Alcohol dehydrogenases of the MDR family. | 84.17 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 84.16 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 84.13 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 84.12 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 84.1 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.03 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 84.02 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 84.02 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 84.0 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 83.9 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 83.87 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 83.87 |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=164.66 Aligned_cols=139 Identities=47% Similarity=0.738 Sum_probs=115.2
Q ss_pred EEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHH
Q 041272 124 CVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203 (267)
Q Consensus 124 ~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~ 203 (267)
+|+|+|+.+++++.+++++++.+ ...++++++++++.+....++ .++|++++|+||||.+|+.+.+.++....+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~---~~~~v~li~~sHe~l~~~i~~-~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG---LEDRVTLILDSHENLDEYIPE-GPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S---EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC---CCCcEEEEECCHHHHHhhCcc-CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 69999999999999999999987 467899999999999998866 57999999999999999999999999999999
Q ss_pred HHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEeeecCC-CCceEEEeec
Q 041272 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFK 266 (267)
Q Consensus 204 ~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~p~~~~~~k 266 (267)
.+.++|+|||++.+++|+||+++.+|.+.+.+|++.++++.|.+.++.++|+. .||++++++|
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred HHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999996 5777777765
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-19 Score=147.71 Aligned_cols=114 Identities=25% Similarity=0.364 Sum_probs=96.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.+|.+|||+|||||.++..+++..+. ++|+|+|+|+.|++.|++++.+.+ ..+++|+.++++.|+ .+
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g~----g~v~~~D~s~~ML~~a~~k~~~~~----~~~i~fv~~dAe~LP---f~ 116 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVGT----GEVVGLDISESMLEVAREKLKKKG----VQNVEFVVGDAENLP---FP 116 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCC----ceEEEEECCHHHHHHHHHHhhccC----ccceEEEEechhhCC---CC
Confidence 3457999999999999999999999864 899999999999999999999876 345999987775554 56
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
+.+||++...+ .+...++.+++|++++|+|||||++++..+..+.
T Consensus 117 D~sFD~vt~~f---------glrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 117 DNSFDAVTISF---------GLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred CCccCEEEeee---------hhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 77999998885 3444567789999999999999999998876544
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=145.45 Aligned_cols=115 Identities=23% Similarity=0.347 Sum_probs=84.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
...++.+|||+|||||..+..+++.+++ .++|+|+|+|++|++.|+++++..+ ..++++++++.+++. .+
T Consensus 44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~---~~~v~~vD~s~~ML~~a~~k~~~~~----~~~i~~v~~da~~lp---~~ 113 (233)
T PF01209_consen 44 GLRPGDRVLDVACGTGDVTRELARRVGP---NGKVVGVDISPGMLEVARKKLKREG----LQNIEFVQGDAEDLP---FP 113 (233)
T ss_dssp T--S--EEEEET-TTSHHHHHHGGGSS------EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB-----S-
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHCCC---ccEEEEecCCHHHHHHHHHHHHhhC----CCCeeEEEcCHHHhc---CC
Confidence 3568899999999999999999998764 6899999999999999999998876 459999997776553 44
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
+.+||.|++.++ ++..++..+++++++|+|||||++++.++....
T Consensus 114 d~sfD~v~~~fg---------lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 114 DNSFDAVTCSFG---------LRNFPDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp TT-EEEEEEES----------GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred CCceeEEEHHhh---------HHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 678999998853 334455678999999999999999999885543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-18 Score=125.80 Aligned_cols=111 Identities=19% Similarity=0.307 Sum_probs=85.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
|+.+|||+|||+|.++..+++..+ +.+|+|+|+|+++++.|++++.+.+ ...++++++++. .... .....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~--~~~~~ 70 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP----GARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDP--DFLEP 70 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT----TSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGT--TTSSC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCc--ccCCC
Confidence 578999999999999999999543 5899999999999999999995554 468999998776 2221 12236
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
||+|+.+. . . .......+...++++++.+.|+|||++++..
T Consensus 71 ~D~v~~~~-~---~-~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 71 FDLVICSG-F---T-LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEEEECS-G---S-GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEECC-C---c-cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999984 1 0 0001112667899999999999999999865
|
... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=132.12 Aligned_cols=111 Identities=15% Similarity=0.247 Sum_probs=92.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+.+.+|||+|||+|.++..+++..+ |+++++|+|+|++|++.|+++++..+ ..+++|++++..++... .+ .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~---~~~~i~gvD~s~~~i~~a~~~~~~~~----~~ni~~~~~d~~~l~~~-~~-~ 72 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN---PGAKIIGVDISEEMIEYAKKRAKELG----LDNIEFIQGDIEDLPQE-LE-E 72 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST---TTSEEEEEESSHHHHHHHHHHHHHTT----STTEEEEESBTTCGCGC-SS-T
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC---CCCEEEEEECcHHHHHHhhccccccc----ccccceEEeehhccccc-cC-C
Confidence 4578999999999999999996543 36899999999999999999999887 56999999888775433 22 5
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.||+|+++. +.++..+...+++++.+.||+||.+++..+.
T Consensus 73 ~~D~I~~~~---------~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNG---------VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TEEEEEEES---------TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEEEcC---------chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 799999993 4466677789999999999999999998875
|
... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-17 Score=131.67 Aligned_cols=147 Identities=13% Similarity=0.091 Sum_probs=103.8
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||+|||+|..+..+++..+ +++|+|+|++++|++.|+++++.++ ..+++++.++..++..
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~----~~~V~giD~s~~~l~~A~~~~~~~~----l~~i~~~~~d~~~~~~--- 109 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARP----ELKVTLVDSLGKKIAFLREVAAELG----LKNVTVVHGRAEEFGQ--- 109 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHcC----CCCEEEEeccHhhCCC---
Confidence 3456789999999999999999998643 5899999999999999999999987 4569999877655432
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
+.+||+|+++. ......++++++++|||||++++..... ....+......+.-.-..++.
T Consensus 110 -~~~fDlV~~~~-------------~~~~~~~l~~~~~~LkpGG~lv~~~~~~------~~~~l~~~~~~~~~~~~~~~~ 169 (187)
T PRK00107 110 -EEKFDVVTSRA-------------VASLSDLVELCLPLLKPGGRFLALKGRD------PEEEIAELPKALGGKVEEVIE 169 (187)
T ss_pred -CCCccEEEEcc-------------ccCHHHHHHHHHHhcCCCeEEEEEeCCC------hHHHHHHHHHhcCceEeeeEE
Confidence 44799999872 1234689999999999999998876521 122233333332211122233
Q ss_pred EeeecCCCCceEEEeecC
Q 041272 250 FQMLNRPLAPVLVFLFKR 267 (267)
Q Consensus 250 ~~~~~~~~~p~~~~~~k~ 267 (267)
+.-..-..+|-+++++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 170 LTLPGLDGERHLVIIRKK 187 (187)
T ss_pred EecCCCCCcEEEEEEecC
Confidence 333222457778888875
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-17 Score=139.24 Aligned_cols=117 Identities=20% Similarity=0.279 Sum_probs=90.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++..++ .++|+|+|+|++|++.|+++...... ....++++++++..++ ..+
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~---~~~V~gvD~S~~ml~~A~~r~~~~~~-~~~~~i~~~~~d~~~l---p~~ 142 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGS---DGKVMGLDFSSEQLAVAASRQELKAK-SCYKNIEWIEGDATDL---PFD 142 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHhhhhhh-ccCCCeEEEEcccccC---CCC
Confidence 3567899999999999999999988653 47999999999999999987642110 0135788888766443 344
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
+.+||+|+++. .+++.+++.+++++++|+|||||++++.++...
T Consensus 143 ~~sfD~V~~~~---------~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 143 DCYFDAITMGY---------GLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred CCCEeEEEEec---------ccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 56899999874 344456678999999999999999999887543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=134.41 Aligned_cols=128 Identities=17% Similarity=0.171 Sum_probs=97.1
Q ss_pred cccCCCCC--CCCCCcchhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 63 NCTPLPLC--KDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 63 ~~~~~~~~--~d~~~~~~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
++.+.+.+ .+... ....-.+.++....++++++|||||||+|+.+..||+.. .+|++||+.++..+.|++
T Consensus 41 AY~d~~lpi~~gqti--s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~------~~V~siEr~~~L~~~A~~ 112 (209)
T COG2518 41 AYEDRALPIGCGQTI--SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV------GRVVSIERIEELAEQARR 112 (209)
T ss_pred cccCCcccCCCCcee--cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh------CeEEEEEEcHHHHHHHHH
Confidence 44454333 33333 334445555555678999999999999999999999985 589999999999999999
Q ss_pred HHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 141 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|++..+ ..||.++++|. ....++..+||.|+..... ..+-+.+.+.||+||++++-.-
T Consensus 113 ~L~~lg----~~nV~v~~gDG---~~G~~~~aPyD~I~Vtaaa---------------~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 113 NLETLG----YENVTVRHGDG---SKGWPEEAPYDRIIVTAAA---------------PEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred HHHHcC----CCceEEEECCc---ccCCCCCCCcCEEEEeecc---------------CCCCHHHHHhcccCCEEEEEEc
Confidence 999988 66799998665 5555566789999888432 1233567888999999987654
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-17 Score=134.33 Aligned_cols=106 Identities=19% Similarity=0.277 Sum_probs=82.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++++|||+|||+|+.+..+++.++. .++|+|+|+++++++.|+++++.++ ...+++++.++..+. ++.
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~---~g~V~~iD~~~~~~~~a~~~l~~~~---~~~~v~~~~~d~~~~---~~~ 139 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIER---RGKVYTVEIVKELAIYAAQNIERLG---YWGVVEVYHGDGKRG---LEK 139 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEECCcccC---Ccc
Confidence 4678899999999999999999998754 4799999999999999999998876 334688888665432 233
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+||.|+++... ..+.+++.+.|||||++++...
T Consensus 140 ~~~fD~Ii~~~~~---------------~~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 140 HAPFDAIIVTAAA---------------STIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CCCccEEEEccCc---------------chhhHHHHHhcCcCcEEEEEEc
Confidence 4579999988421 1334578899999999977553
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-17 Score=135.46 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=120.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
....+|||+|||+|.+++.+|++.. .++++|||+++++.+.|+++.+.++ +..+++++++|..++.......
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~----~a~I~~VEiq~~~a~~A~~nv~ln~---l~~ri~v~~~Di~~~~~~~~~~- 114 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTE----KAKIVGVEIQEEAAEMAQRNVALNP---LEERIQVIEADIKEFLKALVFA- 114 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCC----CCcEEEEEeCHHHHHHHHHHHHhCc---chhceeEehhhHHHhhhccccc-
Confidence 3478999999999999999999864 3899999999999999999999987 6899999998888877765443
Q ss_pred cEEEEEEeCCCCCCCCC-cee-------e-chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCC
Q 041272 173 AVRLVAFNLGYLPGGDK-SVI-------T-TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVD 243 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~-~~~-------~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 243 (267)
+||+|++|+||....+. .-. | ..-..+++++.+.++|||||.++++.. .+.+.+++..+...
T Consensus 115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r---------~erl~ei~~~l~~~ 185 (248)
T COG4123 115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR---------PERLAEIIELLKSY 185 (248)
T ss_pred ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec---------HHHHHHHHHHHHhc
Confidence 79999999999776654 100 1 112357899999999999999988765 24455566666666
Q ss_pred ceEEEEEeeecC--CCCceEEEe
Q 041272 244 DWICCKFQMLNR--PLAPVLVFL 264 (267)
Q Consensus 244 ~~~~~~~~~~~~--~~~p~~~~~ 264 (267)
.|...+..++.. .+.+-.+++
T Consensus 186 ~~~~k~i~~V~p~~~k~A~~vLv 208 (248)
T COG4123 186 NLEPKRIQFVYPKIGKAANRVLV 208 (248)
T ss_pred CCCceEEEEecCCCCCcceEEEE
Confidence 677777777665 355555544
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-17 Score=134.02 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=85.3
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
..+....++++++|||+|||+|+.+..+++.++. +++|+++|+++++++.|+++++..+ ..+++++.++....
T Consensus 67 ~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~---~~~V~~vE~~~~~~~~a~~~l~~~g----~~~v~~~~gd~~~~ 139 (212)
T PRK13942 67 IMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK---SGKVVTIERIPELAEKAKKTLKKLG----YDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccC
Confidence 3333345788999999999999999999998754 5799999999999999999999877 56899998775432
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..+..+||.|+++... ..+.+.+.+.|||||++++..
T Consensus 140 ---~~~~~~fD~I~~~~~~---------------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 ---YEENAPYDRIYVTAAG---------------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ---CCcCCCcCEEEECCCc---------------ccchHHHHHhhCCCcEEEEEE
Confidence 2334579999887321 133456778899999998754
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-17 Score=135.68 Aligned_cols=106 Identities=15% Similarity=0.254 Sum_probs=91.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
+|.+|||+|||.|.++..||+. ++.|+|+|+++.+|+.|+.++.+.+ -++++.+...+++.. ...+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se~~I~~Ak~ha~e~g-----v~i~y~~~~~edl~~---~~~~ 124 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL------GASVTGIDASEKPIEVAKLHALESG-----VNIDYRQATVEDLAS---AGGQ 124 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC------CCeeEEecCChHHHHHHHHhhhhcc-----ccccchhhhHHHHHh---cCCC
Confidence 7899999999999999999998 6899999999999999999999877 346666655555543 3368
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
||+|++. .++.|.+++..+++.+.+++||||.+++++...
T Consensus 125 FDvV~cm---------EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 125 FDVVTCM---------EVLEHVPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ccEEEEh---------hHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 9999998 788899999999999999999999999988743
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=136.05 Aligned_cols=139 Identities=16% Similarity=0.120 Sum_probs=104.9
Q ss_pred cccccCCCCCCCCCCcchhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 61 TNNCTPLPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 61 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
++.|..++.+.. .+...+....-+.+.+..|++|++|||||||.|.+++.+|++. +.+|+|+++|+++.+.+++
T Consensus 40 ~Yscayf~~~~~-tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-----~v~V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 40 TYSCAYFEDPDM-TLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-----GVTVVGVTLSEEQLAYAEK 113 (283)
T ss_pred ceeeEEeCCCCC-ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-----CCEEEEeeCCHHHHHHHHH
Confidence 445555544332 3433444445555556679999999999999999999999997 4799999999999999999
Q ss_pred HHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEE
Q 041272 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 141 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
++++.| ...+++++..|..++. ..||.|++- .... ..+....+++.+.+.|+|||.+++.
T Consensus 114 r~~~~g---l~~~v~v~l~d~rd~~------e~fDrIvSv---------gmfEhvg~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 114 RIAARG---LEDNVEVRLQDYRDFE------EPFDRIVSV---------GMFEHVGKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred HHHHcC---CCcccEEEeccccccc------cccceeeeh---------hhHHHhCcccHHHHHHHHHhhcCCCceEEEE
Confidence 999988 4568888765544443 249999886 2332 2455789999999999999999988
Q ss_pred EecCC
Q 041272 219 VYVGH 223 (267)
Q Consensus 219 ~~~~~ 223 (267)
+....
T Consensus 176 ~I~~~ 180 (283)
T COG2230 176 SITGP 180 (283)
T ss_pred EecCC
Confidence 76543
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-17 Score=135.38 Aligned_cols=117 Identities=19% Similarity=0.206 Sum_probs=87.4
Q ss_pred hHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe
Q 041272 79 LITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158 (267)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~ 158 (267)
.+.-.+..+....+++|++|||||||+|+.+..|+..++. .++|++||+++..++.|++++...+ ..|+.++.
T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~---~g~Vv~vE~~~~l~~~A~~~l~~~~----~~nv~~~~ 129 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGP---VGRVVSVERDPELAERARRNLARLG----IDNVEVVV 129 (209)
T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHST---TEEEEEEESBHHHHHHHHHHHHHHT----THSEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCc---cceEEEECccHHHHHHHHHHHHHhc----cCceeEEE
Confidence 3444555555556899999999999999999999999875 5789999999999999999999987 56899998
Q ss_pred cChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 159 ~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|.. ...+...+||.|+.+... .++-..+.+.||+||++++..-
T Consensus 130 gdg~---~g~~~~apfD~I~v~~a~---------------~~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 GDGS---EGWPEEAPFDRIIVTAAV---------------PEIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-GG---GTTGGG-SEEEEEESSBB---------------SS--HHHHHTEEEEEEEEEEES
T ss_pred cchh---hccccCCCcCEEEEeecc---------------chHHHHHHHhcCCCcEEEEEEc
Confidence 7653 333344589999998432 1334567888999999987654
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=141.72 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=89.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+++.+|||||||+|..+..+++.. +.+|+|||+|+.|++.|+++++..+ ...+++++.+|..++ ..++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-----g~~v~gvD~s~~~i~~a~~~~~~~g---~~~~v~~~~~D~~~~---~~~~~ 185 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-----GANVKGITLSPVQAARANALAAAQG---LSDKVSFQVADALNQ---PFEDG 185 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcCcccC---CCCCC
Confidence 567899999999999999999875 3699999999999999999988766 346789988766443 33456
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.||+|++.. ..++.++..++++++.++|||||+++++++.
T Consensus 186 ~FD~V~s~~---------~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 186 QFDLVWSME---------SGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CccEEEECC---------chhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 899999872 3444556779999999999999999998763
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-16 Score=130.18 Aligned_cols=111 Identities=18% Similarity=0.268 Sum_probs=89.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++..++ +++|+|+|+++++++.|+++++..+ ..+++++.++..++. .+
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~---~~ 111 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGP---EGHVIGLDFSENMLSVGRQKVKDAG----LHNVELVHGNAMELP---FD 111 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEEechhcCC---CC
Confidence 4568899999999999999999998754 5799999999999999999988765 467888887765432 23
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.+||+|+++. ..++.++..++++++.++|||||++++.+.
T Consensus 112 ~~~fD~V~~~~---------~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 112 DNSFDYVTIGF---------GLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCccEEEEec---------ccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 45799998873 233445567899999999999999988765
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=131.88 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=83.8
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||+|||+|+.+..+++..+. .++|+++|+++++++.|++++++.+ ..+++++.++..+. ..
T Consensus 73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~---~g~V~~vD~~~~~~~~A~~~~~~~g----~~~v~~~~~d~~~~---~~ 142 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSGYQAAVLAEIVGR---DGLVVSIERIPELAEKAERRLRKLG----LDNVIVIVGDGTQG---WE 142 (215)
T ss_pred hCCCCcCEEEEECCCccHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHCC----CCCeEEEECCcccC---Cc
Confidence 35778999999999999999999998754 4689999999999999999999877 47899988665432 22
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...+||+|+++... ..+.+.+.+.|||||++++...
T Consensus 143 ~~~~fD~Ii~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 143 PLAPYDRIYVTAAG---------------PKIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ccCCCCEEEEcCCc---------------ccccHHHHHhcCcCcEEEEEEc
Confidence 23479999987321 2345668889999999987543
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.6e-16 Score=123.33 Aligned_cols=111 Identities=27% Similarity=0.381 Sum_probs=85.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.+++.+++..+ ..+|+++|+++.+++.|++|++.++ ..+++++..|. .+... +..
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~----~~~v~~vDi~~~a~~~a~~n~~~n~----~~~v~~~~~d~---~~~~~-~~~ 98 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP----DAKVTAVDINPDALELAKRNAERNG----LENVEVVQSDL---FEALP-DGK 98 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST----CEEEEEEESBHHHHHHHHHHHHHTT----CTTEEEEESST---TTTCC-TTC
T ss_pred cCCeEEEecCChHHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHHhcC----ccccccccccc---ccccc-ccc
Confidence 678999999999999999999853 4789999999999999999999987 34488876444 33333 458
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|++|+|+....+ .......++++++.++|||||.++++..
T Consensus 99 fD~Iv~NPP~~~~~~----~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 99 FDLIVSNPPFHAGGD----DGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp EEEEEE---SBTTSH----CHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEEccchhcccc----cchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 999999976432221 1223457899999999999999988665
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-15 Score=134.40 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=97.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|.+++.+++..+ +.+|+|+|+|++|++.|++|++.++ .+++++++|..+. ..+..
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p----~a~VtAVDiS~~ALe~AreNa~~~g-----~rV~fi~gDl~e~--~l~~~ 317 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERP----DAFVRASDISPPALETARKNAADLG-----ARVEFAHGSWFDT--DMPSE 317 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcC-----CcEEEEEcchhcc--ccccC
Confidence 45667999999999999999998743 5899999999999999999998866 3788888665321 11223
Q ss_pred CcEEEEEEeCCCCCCCCCceee-----c-----------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHH
Q 041272 172 TAVRLVAFNLGYLPGGDKSVIT-----T-----------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEA 235 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~-----~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 235 (267)
.+||+|++|+||++..+..... . ....+++++++.+.|+|||.+++... ......+.+
T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG------~~Q~e~V~~ 391 (423)
T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG------FDQGAAVRG 391 (423)
T ss_pred CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC------ccHHHHHHH
Confidence 4799999999998876532221 1 12346788888999999999876543 224456666
Q ss_pred HHHhC
Q 041272 236 FARSL 240 (267)
Q Consensus 236 ~~~~l 240 (267)
.+...
T Consensus 392 ll~~~ 396 (423)
T PRK14966 392 VLAEN 396 (423)
T ss_pred HHHHC
Confidence 66653
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=134.81 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=85.0
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
..+-+..+++|++|||||||.|.++..+|++. +++|+||.+|++..+.|++++++.+ +..++++...|..++
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-----g~~v~gitlS~~Q~~~a~~~~~~~g---l~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-----GCHVTGITLSEEQAEYARERIREAG---LEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHCST---SSSTEEEEES-GGG-
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-----CcEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEeecccc
Confidence 33445578999999999999999999999997 3799999999999999999999988 567888888666554
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.. +||.|++- ....+ ......+++++.++|||||++++...
T Consensus 125 ~~------~fD~IvSi---------~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 125 PG------KFDRIVSI---------EMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp --------S-SEEEEE---------SEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred CC------CCCEEEEE---------echhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 32 79998887 33333 36778999999999999999988655
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.69 E-value=8e-16 Score=124.86 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=97.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.++..++... |+++|+|+|.|+.|++.+++++++++ ..++++++++..++. ...+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~----~~~~V~~iD~s~~~~~~a~~~~~~~~----~~~i~~i~~d~~~~~----~~~~ 109 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR----PELKLTLLESNHKKVAFLREVKAELG----LNNVEIVNGRAEDFQ----HEEQ 109 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC----CCCeEEEEeCcHHHHHHHHHHHHHhC----CCCeEEEecchhhcc----ccCC
Confidence 47899999999999999998764 25799999999999999999998876 457999988776642 2347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEeee
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQML 253 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (267)
||+|+++. ......+++.+.++|+|||.+++... . .....+....+.....+++.+.....
T Consensus 110 fD~I~s~~-------------~~~~~~~~~~~~~~LkpgG~lvi~~~---~---~~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 110 FDVITSRA-------------LASLNVLLELTLNLLKVGGYFLAYKG---K---KYLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred ccEEEehh-------------hhCHHHHHHHHHHhcCCCCEEEEEcC---C---CcHHHHHHHHHhhhhcCceEeecccc
Confidence 99999873 12235688889999999999987642 1 12233333444444456777776665
Q ss_pred cCC
Q 041272 254 NRP 256 (267)
Q Consensus 254 ~~~ 256 (267)
..+
T Consensus 171 ~~~ 173 (181)
T TIGR00138 171 TGP 173 (181)
T ss_pred CCC
Confidence 544
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-16 Score=134.05 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=90.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++. +.+|+|+|+|++|++.|++++...+ ...++++++++..++.... +.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~------g~~v~~vD~s~~~l~~a~~~~~~~g---~~~~v~~~~~d~~~l~~~~--~~ 111 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL------GHQVILCDLSAEMIQRAKQAAEAKG---VSDNMQFIHCAAQDIAQHL--ET 111 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcC---CccceEEEEcCHHHHhhhc--CC
Confidence 45679999999999999999987 4789999999999999999998876 4568899988877765433 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.||+|++. .++++.+++..+++++.++|||||++++..+.
T Consensus 112 ~fD~V~~~---------~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 112 PVDLILFH---------AVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCCEEEeh---------hHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 79999987 34555566779999999999999999887654
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=133.26 Aligned_cols=121 Identities=15% Similarity=0.186 Sum_probs=90.6
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
....++...+.++.+|||+|||+|..+..+++.+.. |+.+|+|+|+|+.|++.|++++...+ ...++++++++..
T Consensus 45 ~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~--~~~~v~gvD~S~~ml~~A~~~~~~~~---~~~~v~~~~~d~~ 119 (247)
T PRK15451 45 MIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHH--DNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIR 119 (247)
T ss_pred HHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEeCChh
Confidence 334444455678899999999999999999885421 46899999999999999999998765 3457888886654
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
++ ..+ .+|++++++. +++ ..+....+++++++.|||||.+++.+..
T Consensus 120 ~~---~~~--~~D~vv~~~~--------l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 120 DI---AIE--NASMVVLNFT--------LQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hC---CCC--CCCEEehhhH--------HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 43 222 4677777631 111 2344578999999999999999998754
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-16 Score=116.97 Aligned_cols=116 Identities=28% Similarity=0.373 Sum_probs=90.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
|.+|||+|||+|.++..+++.. . .+++|+|+++.+++.|++++...+ ...+++++++|..+..+... +.+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~----~~~~gvdi~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~~~~~-~~~~ 71 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-A----ARVTGVDIDPEAVELARRNLPRNG---LDDRVEVIVGDARDLPEPLP-DGKF 71 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-T----CEEEEEESSHHHHHHHHHHCHHCT---TTTTEEEEESHHHHHHHTCT-TT-E
T ss_pred CCEEEEcCcchHHHHHHHHHHC-C----CeEEEEEECHHHHHHHHHHHHHcc---CCceEEEEECchhhchhhcc-Ccee
Confidence 5689999999999999999884 2 799999999999999999999876 45789999988877764333 3589
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|+|++|++|.+..... .........+++++.++|||||.++++.+
T Consensus 72 D~Iv~npP~~~~~~~~-~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 72 DLIVTNPPYGPRSGDK-AALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EEEEE--STTSBTT-----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEECCCCccccccc-hhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999999886542111 11223567899999999999999988764
|
... |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=126.78 Aligned_cols=145 Identities=14% Similarity=0.211 Sum_probs=98.2
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||+|||+|.++..+++.++ .++|+|+|++++|++.+.+++++ ..|+.++.++..+......
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~----~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~ 137 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE----EGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAH 137 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC----CCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhh
Confidence 4577999999999999999999999874 36999999999999988887765 2567888766543211111
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCC-ChhhHHHHHHHHHhCCCCceEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPG-GREELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 248 (267)
-...||+++.++.. +.....+++++.++|||||.++++.+..... ..+..+..+...+.+...+|+.+
T Consensus 138 l~~~~D~i~~d~~~-----------p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 138 VVEKVDVIYQDVAQ-----------PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEIL 206 (226)
T ss_pred ccccCCEEEECCCC-----------hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 11358999876321 2223457899999999999999953321110 11112222334456666789888
Q ss_pred EEeeecC
Q 041272 249 KFQMLNR 255 (267)
Q Consensus 249 ~~~~~~~ 255 (267)
+...+..
T Consensus 207 ~~~~l~p 213 (226)
T PRK04266 207 EVVDLEP 213 (226)
T ss_pred EEEcCCC
Confidence 7776654
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.1e-16 Score=132.90 Aligned_cols=113 Identities=25% Similarity=0.326 Sum_probs=91.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|..+..+++..+. ..+|+|+|++++|++.|+++....+ ..+++++.++..++ ..+
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~---~~~v~gvD~s~~~l~~A~~~~~~~g----~~~v~~~~~d~~~l---~~~ 143 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGP---TGKVIGVDMTPEMLAKARANARKAG----YTNVEFRLGEIEAL---PVA 143 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEECCCHHHHHHHHHHHHHcC----CCCEEEEEcchhhC---CCC
Confidence 4678999999999999999988887654 5689999999999999999988776 46888887665443 233
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+..||+|+++. ++++.++..+++++++++|||||++++.....
T Consensus 144 ~~~fD~Vi~~~---------v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 144 DNSVDVIISNC---------VINLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred CCceeEEEEcC---------cccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 45899999883 44555566789999999999999999987643
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-16 Score=112.51 Aligned_cols=95 Identities=26% Similarity=0.356 Sum_probs=75.8
Q ss_pred EEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEE
Q 041272 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA 178 (267)
Q Consensus 99 LDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii 178 (267)
||+|||+|..+..++++ + +.+|+|+|+++++++.++++....+ +.++..+..++ ..++.+||+|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~----~~~v~~~D~~~~~~~~~~~~~~~~~-------~~~~~~d~~~l---~~~~~sfD~v~ 65 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G----GASVTGIDISEEMLEQARKRLKNEG-------VSFRQGDAEDL---PFPDNSFDVVF 65 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T----TCEEEEEES-HHHHHHHHHHTTTST-------EEEEESBTTSS---SS-TT-EEEEE
T ss_pred CEecCcCCHHHHHHHhc-c----CCEEEEEeCCHHHHHHHHhcccccC-------chheeehHHhC---ccccccccccc
Confidence 89999999999999998 3 4899999999999999999887643 44666555444 44567999999
Q ss_pred EeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 179 FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 179 ~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
+. .+.++.++..++++++.|+|||||+++|
T Consensus 66 ~~---------~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 66 SN---------SVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EE---------SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cc---------cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 98 4566668889999999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=129.58 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=90.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.+++.|++|++.++ ...+++++++|.. +..+ +..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~----~~~v~avDis~~al~~A~~n~~~~~---~~~~i~~~~~D~~---~~~~-~~~ 189 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP----EAEVDAVDISPDALAVAEINIERHG---LEDRVTLIQSDLF---AALP-GRK 189 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchh---hccC-CCC
Confidence 457999999999999999998853 4799999999999999999999877 3457889886653 2222 347
Q ss_pred EEEEEEeCCCCCCCCCc-----eeech-----------hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKS-----VITTS-----------ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~-----~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|++|+||++..+.. +.+.+ .....+++++.++|+|||++++...
T Consensus 190 fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 190 YDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred ccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99999999998765321 11111 2347789999999999999987554
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-15 Score=127.24 Aligned_cols=127 Identities=22% Similarity=0.276 Sum_probs=96.8
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEE
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL 176 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ 176 (267)
+|||+|||||.+++.++...+ ..+|+|+|+|+.+++.|++|+..++ . .++.+++. ++.+.... +||+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~----~~~V~a~Dis~~Al~~A~~Na~~~~---l-~~~~~~~~---dlf~~~~~--~fDl 179 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP----DAEVIAVDISPDALALARENAERNG---L-VRVLVVQS---DLFEPLRG--KFDL 179 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc----CCeEEEEECCHHHHHHHHHHHHHcC---C-ccEEEEee---ecccccCC--ceeE
Confidence 799999999999999999864 4799999999999999999999988 3 56556553 44444432 7999
Q ss_pred EEEeCCCCCCCCCcee-----ec-----------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhC
Q 041272 177 VAFNLGYLPGGDKSVI-----TT-----------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240 (267)
Q Consensus 177 ii~~~~~lp~~d~~~~-----~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l 240 (267)
|++|+||+|..+.... +. ......++.++.+.|+|||.+++..-. .....+.+.+...
T Consensus 180 IVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~------~q~~~v~~~~~~~ 253 (280)
T COG2890 180 IVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL------TQGEAVKALFEDT 253 (280)
T ss_pred EEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC------CcHHHHHHHHHhc
Confidence 9999999999722221 11 234578899999999999999776542 2345666666665
Q ss_pred CC
Q 041272 241 SV 242 (267)
Q Consensus 241 ~~ 242 (267)
..
T Consensus 254 ~~ 255 (280)
T COG2890 254 GF 255 (280)
T ss_pred CC
Confidence 53
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=125.49 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=87.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhcCCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~~~~ 172 (267)
++.+|||+|||+|..+..+++..+ +.+|+|+|+|+++++.|+++++.++ ..++++++++. ..+..... +.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p----~~~v~gVD~s~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~l~~~~~-~~ 110 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP----DINFIGIEVHEPGVGKALKKIEEEG----LTNLRLLCGDAVEVLLDMFP-DG 110 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC----CccEEEEEechHHHHHHHHHHHHcC----CCCEEEEecCHHHHHHHHcC-cc
Confidence 678999999999999999998753 4799999999999999999998876 47899999887 55543332 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||.++++++. |...............+++++.++|||||++++.+.
T Consensus 111 ~~D~V~~~~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 111 SLDRIYLNFPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ccceEEEECCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 79999988532 111100000011236899999999999999998764
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-14 Score=118.64 Aligned_cols=133 Identities=16% Similarity=0.108 Sum_probs=97.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++..+ +++|+++|+|+++++.|++|+++.+ ..+++++.++..+.......
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~----~~~V~~vD~s~~~~~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCP----KGRVIAIERDEEVVNLIRRNCDRFG----VKNVEVIEGSAPECLAQLAP 108 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhC----CCCeEEEECchHHHHhhCCC
Confidence 456788999999999999999997643 4899999999999999999998876 46788888776543222211
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF 250 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (267)
.+|.++.+. ......+++++.++|+|||++++... ..+....+.+.++.+...++++.+.
T Consensus 109 --~~d~v~~~~-------------~~~~~~~l~~~~~~LkpgG~li~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 109 --APDRVCIEG-------------GRPIKEILQAVWQYLKPGGRLVATAS-----SLEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred --CCCEEEEEC-------------CcCHHHHHHHHHHhcCCCeEEEEEee-----cHHHHHHHHHHHHhcCCCCceEEEE
Confidence 234444431 11236889999999999999988876 2334455666677777777777664
Q ss_pred e
Q 041272 251 Q 251 (267)
Q Consensus 251 ~ 251 (267)
.
T Consensus 169 ~ 169 (196)
T PRK07402 169 A 169 (196)
T ss_pred E
Confidence 3
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-14 Score=116.93 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=88.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++..+ +.+|+++|+++.+++.|+++++.++ ..+++++.++.. ...
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~n~~~~~----~~~i~~~~~d~~---~~~-- 94 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFP----SLQVTAIERNPDALRLIKENRQRFG----CGNIDIIPGEAP---IEL-- 94 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHhC----CCCeEEEecCch---hhc--
Confidence 356788999999999999999998753 5899999999999999999998876 357888876542 112
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
...||+++++.. . .....+++.+.+.|||||++++... ...+...+..+++...
T Consensus 95 ~~~~D~v~~~~~---------~---~~~~~~l~~~~~~Lk~gG~lv~~~~-----~~~~~~~~~~~l~~~g 148 (187)
T PRK08287 95 PGKADAIFIGGS---------G---GNLTAIIDWSLAHLHPGGRLVLTFI-----LLENLHSALAHLEKCG 148 (187)
T ss_pred CcCCCEEEECCC---------c---cCHHHHHHHHHHhcCCCeEEEEEEe-----cHhhHHHHHHHHHHCC
Confidence 236899988621 0 1235788999999999999987654 1223344555555544
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-16 Score=135.40 Aligned_cols=107 Identities=16% Similarity=0.221 Sum_probs=88.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||||||+|.++..+++. +.+|+|||.++++++.|++++...+ ...++++++++..++. ..+..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~------g~~V~GID~s~~~i~~Ar~~~~~~~---~~~~i~~~~~dae~l~---~~~~~ 198 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM------GATVTGVDAVDKNVKIARLHADMDP---VTSTIEYLCTTAEKLA---DEGRK 198 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcC---cccceeEEecCHHHhh---hccCC
Confidence 5679999999999999999875 4799999999999999998876543 2357889887765553 23457
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
||+|++. .++++..++..+++++.++|||||.+++.+..
T Consensus 199 FD~Vi~~---------~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 199 FDAVLSL---------EVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred CCEEEEh---------hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999987 46677777889999999999999999998753
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-15 Score=122.63 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=89.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||||||+|.++..+|+.. |+.+|+|+|+++.+++.|++++...+ ..|+++++++..++.....++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~----p~~~v~gvD~~~~~l~~a~~~~~~~~----l~ni~~i~~d~~~~~~~~~~~~~ 87 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN----PDKNFLGIEIHTPIVLAANNKANKLG----LKNLHVLCGDANELLDKFFPDGS 87 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC----CCCCEEEEEeeHHHHHHHHHHHHHhC----CCCEEEEccCHHHHHHhhCCCCc
Confidence 56699999999999999999885 45899999999999999999998876 46899999888776543334457
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|.++.+++. |..+.......-....+++++.++|||||.+++...
T Consensus 88 ~d~v~~~~pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 88 LSKVFLNFPD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred eeEEEEECCC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999998642 211111000001125799999999999999988764
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-15 Score=127.38 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=99.9
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.|+++... ..++.++..+.. ....
T Consensus 48 l~l~~~~~VLDiGcG~G~~a~~la~~~-----~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~---~~~~ 113 (263)
T PTZ00098 48 IELNENSKVLDIGSGLGGGCKYINEKY-----GAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDIL---KKDF 113 (263)
T ss_pred CCCCCCCEEEEEcCCCChhhHHHHhhc-----CCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcc---cCCC
Confidence 357889999999999999999998764 36999999999999999998754 246888775543 3233
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeech-hhHHHHHHHHHhcccCCcEEEEEEecCCCC--ChhhHH-----------HHHH
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTS-ETTKMALEAAERILIPGGLISMVVYVGHPG--GREELE-----------AVEA 235 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~~~~~~-----------~~~~ 235 (267)
++.+||+|++.. .+.|.. .+...++++++++|||||+++++++..... ...... ....
T Consensus 114 ~~~~FD~V~s~~--------~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (263)
T PTZ00098 114 PENTFDMIYSRD--------AILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQE 185 (263)
T ss_pred CCCCeEEEEEhh--------hHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHH
Confidence 345899999852 122322 467899999999999999999988743221 111110 1134
Q ss_pred HHHhCCCCceEEEEEeeec
Q 041272 236 FARSLSVDDWICCKFQMLN 254 (267)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~ 254 (267)
+.+.+...+|..+....+.
T Consensus 186 ~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 186 YGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHHHHCCCCeeeEEeCc
Confidence 4445555677777665543
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-16 Score=131.67 Aligned_cols=104 Identities=14% Similarity=0.248 Sum_probs=83.4
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccccc----ceEEEecChhhhhhcCCC
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG----LVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~----~v~~~~~~~~~l~~~~~~ 170 (267)
|++|||+|||+|.++..||+. ++.|+|||+++.||+.|+++..... .... ++++.+.+.++..
T Consensus 90 g~~ilDvGCGgGLLSepLArl------ga~V~GID~s~~~V~vA~~h~~~dP--~~~~~~~y~l~~~~~~~E~~~----- 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL------GAQVTGIDASDDMVEVANEHKKMDP--VLEGAIAYRLEYEDTDVEGLT----- 156 (282)
T ss_pred CceEEEeccCccccchhhHhh------CCeeEeecccHHHHHHHHHhhhcCc--hhccccceeeehhhcchhhcc-----
Confidence 578999999999999999998 6899999999999999999944322 1122 3455544433332
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..||.|++. .+++|..+++.+++.+.++|||||.+++++..
T Consensus 157 -~~fDaVvcs---------evleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 157 -GKFDAVVCS---------EVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred -cccceeeeH---------HHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 249999998 68889999999999999999999999998753
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-15 Score=126.65 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=87.9
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE 166 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 166 (267)
+....+.++.+|||+|||+|..+..+++.+.. |+.+|+|+|+|+.|++.|+++++..+ ...++++++++..++.
T Consensus 46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~--p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~~- 119 (239)
T TIGR00740 46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQ--PNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHVE- 119 (239)
T ss_pred HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC-
Confidence 33334567889999999999999999987532 46899999999999999999987654 2357888876664432
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.+ ++|+++++.. +++ ..++...++++++++|||||.+++.+...
T Consensus 120 --~~--~~d~v~~~~~--------l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 120 --IK--NASMVILNFT--------LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred --CC--CCCEEeeecc--------hhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 22 3667766631 111 23456799999999999999999987643
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-14 Score=113.53 Aligned_cols=129 Identities=19% Similarity=0.119 Sum_probs=99.1
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
..+.+..+++|++++|+|||||.+++.++ +.+ |.++||+||.++++++..++|+++.+ .+|++++.+++.+.
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~---p~~~v~AIe~~~~a~~~~~~N~~~fg----~~n~~vv~g~Ap~~ 96 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAG---PSGRVIAIERDEEALELIERNAARFG----VDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhC---CCceEEEEecCHHHHHHHHHHHHHhC----CCcEEEEeccchHh
Confidence 34445578899999999999999999999 444 37999999999999999999999988 79999998877544
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCC
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSV 242 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (267)
...+ .++|.++..= ......+++.+...|||||++++... ..+......++++.+..
T Consensus 97 L~~~---~~~daiFIGG-------------g~~i~~ile~~~~~l~~ggrlV~nai-----tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 97 LPDL---PSPDAIFIGG-------------GGNIEEILEAAWERLKPGGRLVANAI-----TLETLAKALEALEQLGG 153 (187)
T ss_pred hcCC---CCCCEEEECC-------------CCCHHHHHHHHHHHcCcCCeEEEEee-----cHHHHHHHHHHHHHcCC
Confidence 3322 2577777662 13346899999999999999998776 33444445555555554
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-14 Score=117.64 Aligned_cols=112 Identities=25% Similarity=0.303 Sum_probs=87.4
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...+.++.+|||+|||+|.++..+++..+. +.+|+++|+++++++.|+++++.++ ...++.++.++..+.....
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~---~~~v~avD~~~~~~~~a~~n~~~~g---~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGE---TGKVYAVDKDEKAINLTRRNAEKFG---VLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHhC---CCCCeEEEEechhhhHhhc
Confidence 345778999999999999999999987653 5799999999999999999998876 3467888877765433222
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...||.++.+.+ ......+++.+.+.|||||++++...
T Consensus 109 --~~~~D~V~~~~~------------~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 109 --NEKFDRIFIGGG------------SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred --CCCCCEEEECCC------------cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 236899988631 12346899999999999999986443
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=122.26 Aligned_cols=123 Identities=22% Similarity=0.216 Sum_probs=89.9
Q ss_pred hhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh
Q 041272 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR 163 (267)
Q Consensus 84 ~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (267)
...+....+.++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++.|++|+..++ .+++++.++..+
T Consensus 26 ~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~----~~~v~~vD~s~~~l~~a~~n~~~~~-----~~~~~~~~d~~~ 95 (223)
T PRK14967 26 ADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-G----AGSVTAVDISRRAVRSARLNALLAG-----VDVDVRRGDWAR 95 (223)
T ss_pred HHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHhC-----CeeEEEECchhh
Confidence 33343345678899999999999999999975 2 2599999999999999999998766 257777655433
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceee------------chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVIT------------TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~------------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.. ++..||+|++|++|.+........ .......+++++.++|||||++++...
T Consensus 96 ---~~-~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 96 ---AV-EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ---hc-cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 22 234799999999887664321100 112246788999999999999987543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.1e-15 Score=121.06 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=81.6
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|..+..+|+. +.+|+|+|+|++|++.+++++...+ ..+++++..+..++ .. .
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~---~~-~ 93 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERIKAAEN----LDNLHTAVVDLNNL---TF-D 93 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHcC----CCcceEEecChhhC---Cc-C
Confidence 345689999999999999999987 4799999999999999999988766 35677776554332 22 2
Q ss_pred CcEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..||+|+++.. +++ .+.....+++++.++|||||.+++..
T Consensus 94 ~~fD~I~~~~~--------~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 94 GEYDFILSTVV--------LMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CCcCEEEEecc--------hhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 36999998731 111 33467899999999999999976544
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-15 Score=121.71 Aligned_cols=116 Identities=22% Similarity=0.242 Sum_probs=91.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCC--CCcEEEEEeCChHHHHHHHHHHhhcccccccc--ceEEEecChhhhhhcC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADES--SAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG--LVKLFNMCHSRMEEIV 168 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~--p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~ 168 (267)
.++++|||++||||.++..+.++++..+ ...+|+.+|+|++|++.+++++.+.+ ... ++.++.+|+++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~---l~~~~~~~w~~~dAE~Lp--- 172 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP---LKASSRVEWVEGDAEDLP--- 172 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC---CCcCCceEEEeCCcccCC---
Confidence 4678999999999999999999875311 12799999999999999999997754 333 4888888886665
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
.++..+|.....++. ...+++++.+++++|+|||||++.+..++..
T Consensus 173 Fdd~s~D~yTiafGI---------RN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGI---------RNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred CCCCcceeEEEecce---------ecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 445688988777532 2345567999999999999999998888543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-14 Score=124.37 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=89.4
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
.+|||+|||+|.+++.++...+ +.+|+|+|+|+.+++.|++|++.++ ...++++++++.. +... +..||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~----~~~v~avDis~~al~~a~~n~~~~~---~~~~v~~~~~d~~---~~~~-~~~fD 184 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP----NAEVIAVDISPDALAVAEENAEKNQ---LEHRVEFIQSNLF---EPLA-GQKID 184 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchh---ccCc-CCCcc
Confidence 6999999999999999999853 4799999999999999999999877 2345888876543 2222 22699
Q ss_pred EEEEeCCCCCCCCCcee-----ech-----------hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 176 LVAFNLGYLPGGDKSVI-----TTS-----------ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~-----~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|++|++|++..+.... +.+ .....+++++.++|+|||++++...
T Consensus 185 lIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 185 IIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred EEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 99999999887643211 111 2567899999999999999977554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-15 Score=128.45 Aligned_cols=102 Identities=19% Similarity=0.124 Sum_probs=81.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.|++.|+++ ++++++++..++ . .
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p----~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~---~-~ 86 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWP----GAVIEALDSSPEMVAAARER-----------GVDARTGDVRDW---K-P 86 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhC---C-C
Confidence 345788999999999999999998853 57999999999999999762 466777665443 2 2
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..||+|+++. ++++.++...++++++++|||||.+++..+
T Consensus 87 ~~~fD~v~~~~---------~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 87 KPDTDVVVSNA---------ALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CCCceEEEEeh---------hhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 35799999983 445556678999999999999999998754
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=123.98 Aligned_cols=156 Identities=10% Similarity=0.100 Sum_probs=98.8
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...++++++|||+|||+|.++..++..++. .++|+++|+++.|.+...+.++. ..|+.++..|......+.
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~---~G~VyAVD~s~r~~~dLl~~ak~------r~NI~~I~~Da~~p~~y~ 197 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGP---EGVVYAVEFSHRSGRDLTNMAKK------RPNIVPIIEDARYPQKYR 197 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECcHHHHHHHHHHhhh------cCCCEEEECCccChhhhh
Confidence 345789999999999999999999999875 57999999999876555554433 246777776654321111
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCC-hhhHHHHHHHHHhCCCCceEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGG-REELEAVEAFARSLSVDDWIC 247 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 247 (267)
.....+|+|+++.. .++....++.++.++|||||.|+|.....+... ......+..-.+.+.+.+|..
T Consensus 198 ~~~~~vDvV~~Dva-----------~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~ 266 (293)
T PTZ00146 198 MLVPMVDVIFADVA-----------QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKP 266 (293)
T ss_pred cccCCCCEEEEeCC-----------CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCce
Confidence 11236999999952 133445667789999999999998543222211 111122222224455566776
Q ss_pred EEEeeecC--CCCceEEEe
Q 041272 248 CKFQMLNR--PLAPVLVFL 264 (267)
Q Consensus 248 ~~~~~~~~--~~~p~~~~~ 264 (267)
++...+.. .++..++..
T Consensus 267 ~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 267 KEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred EEEEecCCccCCcEEEEEE
Confidence 66555543 244444433
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=115.97 Aligned_cols=112 Identities=20% Similarity=0.204 Sum_probs=85.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++.. .+|+|+|+|+++++.|+++++.++ .+++++.++..+ .. ..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~---~~--~~ 81 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG------KCILTTDINPFAVKELRENAKLNN-----VGLDVVMTDLFK---GV--RG 81 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC------CEEEEEECCHHHHHHHHHHHHHcC-----CceEEEEccccc---cc--CC
Confidence 456799999999999999999862 489999999999999999998765 357777655433 22 23
Q ss_pred cEEEEEEeCCCCCCCCCceee------------chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVIT------------TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~------------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+||+|++|+++++..+..-.. ......++++++.++|||||.+++...
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 799999999886554321100 112257889999999999999988765
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=126.25 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=88.8
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
.+|||+|||+|.++..+++..+ +.+|+|+|+|+.+++.|++|++.++ ...++++++++.. +.++ ...||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p----~~~V~avDis~~al~~A~~n~~~~~---l~~~i~~~~~D~~---~~l~-~~~fD 203 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP----DAEVDAVDISPDALAVAEINIERHG---LEDRVTLIESDLF---AALP-GRRYD 203 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhC---CCCcEEEEECchh---hhCC-CCCcc
Confidence 6899999999999999998753 5899999999999999999999877 3357889886653 2222 24799
Q ss_pred EEEEeCCCCCCCCCc-----eeec-----------hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 176 LVAFNLGYLPGGDKS-----VITT-----------SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~-----~~~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|++|+||++..+.. +.+. ......+++++.++|+|||++++...
T Consensus 204 lIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 204 LIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred EEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 999999998764321 1111 13457889999999999999987544
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=109.76 Aligned_cols=108 Identities=23% Similarity=0.216 Sum_probs=83.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++..+ +.+|+|+|+++.+++.++++++..+ ..+++++.++..+.....
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~-- 85 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVP----NGRVYAIERNPEALRLIERNARRFG----VSNIVIVEGDAPEALEDS-- 85 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCC----CceEEEEcCCHHHHHHHHHHHHHhC----CCceEEEeccccccChhh--
Confidence 456678999999999999999999864 4799999999999999999998876 457888776544322111
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+||.++.... .....++++++.+.|||||++++...
T Consensus 86 ~~~~D~v~~~~~------------~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGS------------GGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCc------------chhHHHHHHHHHHHcCCCCEEEEEec
Confidence 136899988631 12335899999999999999988654
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=133.94 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=87.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|.++..+++.. +.+|+|+|+|+++++.|+++.... ..+++++..+..+ ...++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvDiS~~~l~~A~~~~~~~-----~~~v~~~~~d~~~---~~~~~ 330 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF-----DVHVVGIDLSVNMISFALERAIGR-----KCSVEFEVADCTK---KTYPD 330 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHhhcC-----CCceEEEEcCccc---CCCCC
Confidence 5678899999999999999999875 369999999999999999987643 3578888765533 22234
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.+||+|++. ..+++.+++..++++++++|||||++++.++..
T Consensus 331 ~~fD~I~s~---------~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 331 NSFDVIYSR---------DTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCEEEEEEC---------CcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 579999997 344555667899999999999999999987643
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-14 Score=130.77 Aligned_cols=132 Identities=16% Similarity=0.114 Sum_probs=96.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~ 170 (267)
+.++.+|||+|||+|.+++.+|+. ..+|+|+|+|++|++.|++|++.++ ..++++++++..+... ....
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~------~~~V~gvD~s~~al~~A~~n~~~~~----~~~v~~~~~d~~~~l~~~~~~ 364 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQ------AAEVVGVEGVEAMVERARENARRNG----LDNVTFYHANLEEDFTDQPWA 364 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEeChHHhhhhhhhh
Confidence 467889999999999999999987 3689999999999999999999877 4679999887764322 1112
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF 250 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (267)
+..||+|++|+++.. ..+.++.+.+ ++|+++++++|.+.. +..-+..+-..+|++.+.
T Consensus 365 ~~~fD~Vi~dPPr~g------------~~~~~~~l~~-~~~~~ivyvSCnp~t---------laRDl~~L~~~gY~l~~i 422 (443)
T PRK13168 365 LGGFDKVLLDPPRAG------------AAEVMQALAK-LGPKRIVYVSCNPAT---------LARDAGVLVEAGYRLKRA 422 (443)
T ss_pred cCCCCEEEECcCCcC------------hHHHHHHHHh-cCCCeEEEEEeChHH---------hhccHHHHhhCCcEEEEE
Confidence 346999999976622 1255665555 699999999997421 112222233457888888
Q ss_pred eeecC
Q 041272 251 QMLNR 255 (267)
Q Consensus 251 ~~~~~ 255 (267)
..+..
T Consensus 423 ~~~Dm 427 (443)
T PRK13168 423 GMLDM 427 (443)
T ss_pred EEecc
Confidence 77766
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-16 Score=116.17 Aligned_cols=99 Identities=21% Similarity=0.323 Sum_probs=65.2
Q ss_pred EEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEE
Q 041272 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA 178 (267)
Q Consensus 99 LDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii 178 (267)
||+|||+|.++..+++..+ ..+++|+|+|+.|++.|++++.... ..+...+.....+....... .+||+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~----~~~~~~~D~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~fD~V~ 71 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP----DARYTGVDISPSMLERARERLAELG----NDNFERLRFDVLDLFDYDPP-ESFDLVV 71 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-----EEEEEEEESSSSTTSTTCCCHHHCT-------EEEEE--SSS---CCC-----SEEE
T ss_pred CEeCccChHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHhhhcC----CcceeEEEeecCChhhcccc-cccceeh
Confidence 7999999999999999863 5899999999999999999998865 23444444333333332222 4799999
Q ss_pred EeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 179 FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 179 ~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
+. .++++.++...+++++.++|||||+|
T Consensus 72 ~~---------~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 72 AS---------NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EE----------TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hh---------hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 88 46666688889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-14 Score=128.67 Aligned_cols=161 Identities=12% Similarity=0.063 Sum_probs=109.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccc-cceEEEecChhhhhhc-CC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK-GLVKLFNMCHSRMEEI-VP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~-~~ 169 (267)
+.++.+|||+|||+|.+++.++.. + ..+|+++|+|+.+++.|++|++.++ .. .+++++++|..++... ..
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~-g----a~~V~~VD~s~~al~~a~~N~~~Ng---l~~~~v~~i~~D~~~~l~~~~~ 289 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG-G----CSQVVSVDTSQEALDIARQNVELNK---LDLSKAEFVRDDVFKLLRTYRD 289 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC-C----CCEEEEEECCHHHHHHHHHHHHHcC---CCCCcEEEEEccHHHHHHHHHh
Confidence 346889999999999999876643 2 3699999999999999999999987 22 4789999888765432 22
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
.+..||+|++|+|+.......+.........+++.+.++|+|||+++...+.++. +.++...+..-...-....++++.
T Consensus 290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~-~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM-TSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC-CHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3447999999998865543222222345677788899999999999877765554 333333333222333334566555
Q ss_pred EeeecCCCCceEE
Q 041272 250 FQMLNRPLAPVLV 262 (267)
Q Consensus 250 ~~~~~~~~~p~~~ 262 (267)
... ...++|...
T Consensus 369 ~~~-~~~DhP~~~ 380 (396)
T PRK15128 369 QFR-QAADHPVIA 380 (396)
T ss_pred EcC-CCCCCCCCC
Confidence 322 224666543
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.1e-14 Score=118.74 Aligned_cols=130 Identities=22% Similarity=0.249 Sum_probs=95.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..+.+|||+|||+|.++..+++..+ ..+++|+|+++.+++.|++++...+ ..++++++++..+ .. ++.
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~---~~-~~~ 153 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERP----DARVTAVDISPEALAVARKNAARLG----LDNVTFLQSDWFE---PL-PGG 153 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhc---cC-cCC
Confidence 3456999999999999999998754 4799999999999999999998876 4578888866543 22 235
Q ss_pred cEEEEEEeCCCCCCCCCceee------c-----------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHH
Q 041272 173 AVRLVAFNLGYLPGGDKSVIT------T-----------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEA 235 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~------~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 235 (267)
+||+|++|++|.+..+..... . ......+++++.++|+|||++++.... .....+.+
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~------~~~~~~~~ 227 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY------DQGEAVRA 227 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc------cHHHHHHH
Confidence 799999999987654321110 0 122357899999999999999886531 23345555
Q ss_pred HHHhC
Q 041272 236 FARSL 240 (267)
Q Consensus 236 ~~~~l 240 (267)
+++..
T Consensus 228 ~l~~~ 232 (251)
T TIGR03534 228 LFEAA 232 (251)
T ss_pred HHHhC
Confidence 66553
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-14 Score=121.59 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=83.9
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
+.+|||+|||+|.+++.+++..+ +.+|+|+|+|+.+++.|++|++.++ ++++++|..+...... ...|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~----~~~v~~vDis~~al~~A~~N~~~~~-------~~~~~~D~~~~l~~~~-~~~f 154 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD----GIELHAADIDPAAVRCARRNLADAG-------GTVHEGDLYDALPTAL-RGRV 154 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcC-------CEEEEeechhhcchhc-CCCE
Confidence 45899999999999999998753 4799999999999999999998754 3566655433211101 2369
Q ss_pred EEEEEeCCCCCCCCCcee------ec-----------hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVI------TT-----------SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~------~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|+|++|++|+|..+.... +. .+....+++.+.++|||||++++...
T Consensus 155 DlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 155 DILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred eEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 999999999886532111 11 12246888889999999999987653
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.4e-14 Score=120.10 Aligned_cols=137 Identities=14% Similarity=0.117 Sum_probs=98.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|..+..+++.++. .+.|+++|+++.+++.+++++++++ ..+++++..|..++...
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~---~g~v~a~D~~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~~--- 137 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKN---EGAIVANEFSKSRTKVLIANINRCG----VLNVAVTNFDGRVFGAA--- 137 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCC---CCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEecCCHHHhhhh---
Confidence 4578899999999999999999998754 4799999999999999999999987 46788888776554322
Q ss_pred CCcEEEEEEeCCCCCCC-----CCce--------eechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhh-HHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGG-----DKSV--------ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREE-LEAVEAF 236 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~-----d~~~--------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~ 236 (267)
...||.|+.|++.-... .... ........++|+++.++|||||+++.+++. ...+| ...+..+
T Consensus 138 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs---~~~~Ene~vv~~~ 214 (264)
T TIGR00446 138 VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS---LEPEENEAVVDYL 214 (264)
T ss_pred ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC---CChHHHHHHHHHH
Confidence 23599999997652111 0000 001123467999999999999999877653 23334 3444555
Q ss_pred HHhC
Q 041272 237 ARSL 240 (267)
Q Consensus 237 ~~~l 240 (267)
++..
T Consensus 215 l~~~ 218 (264)
T TIGR00446 215 LEKR 218 (264)
T ss_pred HHhC
Confidence 5543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=122.08 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=99.8
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
.+|||+|||+|..+..+++..+ +.+|+|+|+|+++++.|++++...+ ...+++++..+.... .. ...||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~----~~~v~gid~s~~~~~~a~~~~~~~g---l~~~i~~~~~d~~~~---~~-~~~fD 69 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP----HLQLHGYTISPEQAEVGRERIRALG---LQGRIRIFYRDSAKD---PF-PDTYD 69 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEecccccC---CC-CCCCC
Confidence 3799999999999999998863 4799999999999999999998766 456788887554322 11 23799
Q ss_pred EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChh-------hHHHHHHHHHhCCCCceEEE
Q 041272 176 LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGRE-------ELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~ 248 (267)
+|++. .+.++..+...+++++.++|||||++++.++........ .......|.+.+...+|.+.
T Consensus 70 ~I~~~---------~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 70 LVFGF---------EVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred EeehH---------HHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 99876 344445567899999999999999999987632110000 01123455555666788887
Q ss_pred EEeeec
Q 041272 249 KFQMLN 254 (267)
Q Consensus 249 ~~~~~~ 254 (267)
....+.
T Consensus 141 ~~~~~~ 146 (224)
T smart00828 141 EGVDAS 146 (224)
T ss_pred EeEECc
Confidence 766543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-14 Score=124.24 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=97.7
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
...+.....++.....++.+|||+|||||.+++..++. | ..+|+|+|+++.+++.|++|+..|+ ...++.+.
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G----A~~v~a~DiDp~Av~~a~~N~~~N~---~~~~~~v~ 216 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G----AKKVVAIDIDPLAVEAARENAELNG---VEDRIEVS 216 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T----BSEEEEEESSCHHHHHHHHHHHHTT----TTCEEES
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C----CCeEEEecCCHHHHHHHHHHHHHcC---CCeeEEEE
Confidence 44555666667777889999999999999999999886 3 3689999999999999999999998 44555442
Q ss_pred ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 158 ~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
...+. . ...||+|+.|+. ..-...++..+.++|+|||+++++... .++...+.+.+
T Consensus 217 --~~~~~---~--~~~~dlvvANI~------------~~vL~~l~~~~~~~l~~~G~lIlSGIl-----~~~~~~v~~a~ 272 (295)
T PF06325_consen 217 --LSEDL---V--EGKFDLVVANIL------------ADVLLELAPDIASLLKPGGYLILSGIL-----EEQEDEVIEAY 272 (295)
T ss_dssp --CTSCT---C--CS-EEEEEEES-------------HHHHHHHHHHCHHHEEEEEEEEEEEEE-----GGGHHHHHHHH
T ss_pred --Eeccc---c--cccCCEEEECCC------------HHHHHHHHHHHHHhhCCCCEEEEcccc-----HHHHHHHHHHH
Confidence 11111 1 258999999952 133356777788999999999998773 23334444333
Q ss_pred HhCCCCceEEEEEee
Q 041272 238 RSLSVDDWICCKFQM 252 (267)
Q Consensus 238 ~~l~~~~~~~~~~~~ 252 (267)
+ + +|.+.....
T Consensus 273 ~---~-g~~~~~~~~ 283 (295)
T PF06325_consen 273 K---Q-GFELVEERE 283 (295)
T ss_dssp H---T-TEEEEEEEE
T ss_pred H---C-CCEEEEEEE
Confidence 3 3 787766554
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=123.99 Aligned_cols=104 Identities=20% Similarity=0.268 Sum_probs=82.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++.++ +.+|+|+|+|+.|++.|+++. .++.++.++..++ ..
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~----~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~---~~- 90 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWP----AARITGIDSSPAMLAEARSRL---------PDCQFVEADIASW---QP- 90 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhcc---CC-
Confidence 356788999999999999999998864 489999999999999998863 3567776655433 22
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+||+|+++. .+++.++...+++++.++|||||.+++...
T Consensus 91 ~~~fD~v~~~~---------~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 91 PQALDLIFANA---------SLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCCccEEEEcc---------ChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 34799999983 344455667999999999999999988653
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-14 Score=121.01 Aligned_cols=142 Identities=21% Similarity=0.297 Sum_probs=99.9
Q ss_pred hHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe
Q 041272 79 LITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158 (267)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~ 158 (267)
..+.....++...++++.+|||+|||+|.+++.+++. | ..+|+|+|++|.+++.|++|++.|+. ...+..-.
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL-G----A~~v~g~DiDp~AV~aa~eNa~~N~v---~~~~~~~~ 218 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL-G----AKKVVGVDIDPQAVEAARENARLNGV---ELLVQAKG 218 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc-C----CceEEEecCCHHHHHHHHHHHHHcCC---chhhhccc
Confidence 3445566667777889999999999999999999976 3 36899999999999999999999882 21111111
Q ss_pred cChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHH
Q 041272 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFAR 238 (267)
Q Consensus 159 ~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 238 (267)
.+..+ .....+||+|+.|. + ..-...+...+.++|||||+++++... ....+...+
T Consensus 219 ---~~~~~-~~~~~~~DvIVANI----------L--A~vl~~La~~~~~~lkpgg~lIlSGIl--------~~q~~~V~~ 274 (300)
T COG2264 219 ---FLLLE-VPENGPFDVIVANI----------L--AEVLVELAPDIKRLLKPGGRLILSGIL--------EDQAESVAE 274 (300)
T ss_pred ---ccchh-hcccCcccEEEehh----------h--HHHHHHHHHHHHHHcCCCceEEEEeeh--------HhHHHHHHH
Confidence 11122 22235899999994 1 122347788899999999999988752 123445555
Q ss_pred hCCCCceEEEEEee
Q 041272 239 SLSVDDWICCKFQM 252 (267)
Q Consensus 239 ~l~~~~~~~~~~~~ 252 (267)
.+.+.+|.+.....
T Consensus 275 a~~~~gf~v~~~~~ 288 (300)
T COG2264 275 AYEQAGFEVVEVLE 288 (300)
T ss_pred HHHhCCCeEeEEEe
Confidence 66667787766443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.1e-14 Score=129.52 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=94.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.+++.++...+ +.+|+|+|+|+.+++.|++|+..++ ...++++++++.. +... ...
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p----~~~v~avDis~~al~~A~~N~~~~~---l~~~v~~~~~D~~---~~~~-~~~ 206 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP----NANVIATDISLDAIEVAKSNAIKYE---VTDRIQIIHSNWF---ENIE-KQK 206 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC----CCeEEEEECCHHHHHHHHHHHHHcC---Cccceeeeecchh---hhCc-CCC
Confidence 346899999999999999998753 5899999999999999999998876 3457888876643 2222 347
Q ss_pred EEEEEEeCCCCCCCCCcee------ec-----------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHH
Q 041272 174 VRLVAFNLGYLPGGDKSVI------TT-----------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAF 236 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~------~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 236 (267)
||+|++|++|++..+.... +. ......+++++.++|+|||++++... ......+...
T Consensus 207 fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig------~~q~~~v~~~ 280 (506)
T PRK01544 207 FDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG------FKQEEAVTQI 280 (506)
T ss_pred ccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC------CchHHHHHHH
Confidence 9999999999887553111 11 13356788899999999999987542 1233445555
Q ss_pred HHh
Q 041272 237 ARS 239 (267)
Q Consensus 237 ~~~ 239 (267)
+..
T Consensus 281 ~~~ 283 (506)
T PRK01544 281 FLD 283 (506)
T ss_pred HHh
Confidence 544
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=117.77 Aligned_cols=105 Identities=11% Similarity=0.114 Sum_probs=78.0
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|..+..++++ +.+|+|+|+|+.|++.+++++...+ . ++.+...+.. .... +.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~~~~~----~-~v~~~~~d~~---~~~~-~~ 93 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMKAREN----L-PLRTDAYDIN---AAAL-NE 93 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHhC----C-CceeEeccch---hccc-cC
Confidence 35679999999999999999986 4799999999999999999887765 2 2454443332 2111 23
Q ss_pred cEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|+++..+ ++ .......+++++.++|||||++++..+
T Consensus 94 ~fD~I~~~~~~--------~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 94 DYDFIFSTVVF--------MFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CCCEEEEeccc--------ccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 69999887421 11 234567899999999999999776654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-14 Score=126.50 Aligned_cols=140 Identities=17% Similarity=0.099 Sum_probs=96.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++.++ +.+|+++|+|++|++.|+++... .+++++.++..++ ..++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~----~~~VtgVD~S~~mL~~A~~k~~~-------~~i~~i~gD~e~l---p~~~~ 177 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPL-------KECKIIEGDAEDL---PFPTD 177 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhhhc-------cCCeEEeccHHhC---CCCCC
Confidence 4678999999999999999998764 37999999999999999987642 4577777665443 23345
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhh--------HHHHHHHHHhCCCCc
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREE--------LEAVEAFARSLSVDD 244 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------~~~~~~~~~~l~~~~ 244 (267)
.||+|+++. .+++.++...+++++.++|||||++++............ ....+++.+.+.+.+
T Consensus 178 sFDvVIs~~---------~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aG 248 (340)
T PLN02490 178 YADRYVSAG---------SIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAG 248 (340)
T ss_pred ceeEEEEcC---------hhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCC
Confidence 799999872 334444557899999999999999988654221100000 001234445555567
Q ss_pred eEEEEEeeecC
Q 041272 245 WICCKFQMLNR 255 (267)
Q Consensus 245 ~~~~~~~~~~~ 255 (267)
|..++...+..
T Consensus 249 F~~V~i~~i~~ 259 (340)
T PLN02490 249 FKDVKLKRIGP 259 (340)
T ss_pred CeEEEEEEcCh
Confidence 87776655433
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-14 Score=119.26 Aligned_cols=126 Identities=19% Similarity=0.232 Sum_probs=87.7
Q ss_pred HhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc
Q 041272 88 WKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 88 ~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 167 (267)
+...+.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|++|++.++ ...++.+..+
T Consensus 113 l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g----~~~v~giDis~~~l~~A~~n~~~~~---~~~~~~~~~~-------- 176 (250)
T PRK00517 113 LEKLVLPGKTVLDVGCGSGILAIAAAKL-G----AKKVLAVDIDPQAVEAARENAELNG---VELNVYLPQG-------- 176 (250)
T ss_pred HHhhcCCCCEEEEeCCcHHHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHcC---CCceEEEccC--------
Confidence 3334668899999999999999887764 3 2479999999999999999998876 2233443322
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWIC 247 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (267)
+.+||+|++|.. ......+++++.++|||||+++++... ..+...+.. .+...+|.+
T Consensus 177 ---~~~fD~Vvani~------------~~~~~~l~~~~~~~LkpgG~lilsgi~-----~~~~~~v~~---~l~~~Gf~~ 233 (250)
T PRK00517 177 ---DLKADVIVANIL------------ANPLLELAPDLARLLKPGGRLILSGIL-----EEQADEVLE---AYEEAGFTL 233 (250)
T ss_pred ---CCCcCEEEEcCc------------HHHHHHHHHHHHHhcCCCcEEEEEECc-----HhhHHHHHH---HHHHCCCEE
Confidence 116899999842 123457889999999999999987652 122333333 334456766
Q ss_pred EEEee
Q 041272 248 CKFQM 252 (267)
Q Consensus 248 ~~~~~ 252 (267)
.+...
T Consensus 234 ~~~~~ 238 (250)
T PRK00517 234 DEVLE 238 (250)
T ss_pred EEEEE
Confidence 65433
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-14 Score=127.13 Aligned_cols=113 Identities=19% Similarity=0.139 Sum_probs=85.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
+.+|||+|||+|.++..++++. |..+|+++|+|+.+++.|++|++.++.. ...+++++..+. .+.. +..+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~----P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~---l~~~-~~~~f 299 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKN----PQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNA---LSGV-EPFRF 299 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccc---cccC-CCCCE
Confidence 4699999999999999999985 4589999999999999999999877510 023677776443 2222 22479
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|+|++|+++..... .......++++++.++|||||.++++..
T Consensus 300 DlIlsNPPfh~~~~----~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 300 NAVLCNPPFHQQHA----LTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred EEEEECcCcccCcc----CCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 99999987744321 1123456899999999999999999864
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-14 Score=123.60 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=81.6
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++++|||+|||+|.++..+++..+. .++|+|+|+++++++.|+++++..+ ..++.+++++... ...
T Consensus 76 L~i~~g~~VLDIG~GtG~~a~~LA~~~~~---~g~VvgVDis~~~l~~Ar~~l~~~g----~~nV~~i~gD~~~---~~~ 145 (322)
T PRK13943 76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVRRLG----IENVIFVCGDGYY---GVP 145 (322)
T ss_pred cCCCCCCEEEEEeCCccHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCChhh---ccc
Confidence 35678899999999999999999998753 3589999999999999999998877 4678888766433 223
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+..+||+|+.+.+. ......+.+.|+|||++++..
T Consensus 146 ~~~~fD~Ii~~~g~---------------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 146 EFAPYDVIFVTVGV---------------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccCCccEEEECCch---------------HHhHHHHHHhcCCCCEEEEEe
Confidence 33469999987321 133455778999999998754
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=8e-14 Score=121.37 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=84.8
Q ss_pred HHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 82 IAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 82 ~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
.....++.....++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++.|++|+..++ ...++.+...+
T Consensus 147 ~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g----~~~V~avDid~~al~~a~~n~~~n~---~~~~~~~~~~~- 217 (288)
T TIGR00406 147 SLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G----AAKVVGIDIDPLAVESARKNAELNQ---VSDRLQVKLIY- 217 (288)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHcC---CCcceEEEecc-
Confidence 3444444445668899999999999999888864 3 3689999999999999999998876 33455555433
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.... .+.+||+|++|+. ......++.++.++|||||+++++..
T Consensus 218 --~~~~--~~~~fDlVvan~~------------~~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 218 --LEQP--IEGKADVIVANIL------------AEVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred --cccc--cCCCceEEEEecC------------HHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1111 1347999999842 13345789999999999999998776
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-14 Score=116.96 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=80.5
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||+|||+|+.+..+++.. .+|+++|+++++++.|++++++.+ ..+++++.++..+ ...
T Consensus 74 l~~~~~~~VLeiG~GsG~~t~~la~~~------~~v~~vd~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~---~~~ 140 (212)
T PRK00312 74 LELKPGDRVLEIGTGSGYQAAVLAHLV------RRVFSVERIKTLQWEAKRRLKQLG----LHNVSVRHGDGWK---GWP 140 (212)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHh------CEEEEEeCCHHHHHHHHHHHHHCC----CCceEEEECCccc---CCC
Confidence 356788999999999999999888873 589999999999999999998876 4678888766532 222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...+||+|+++... ..+.+.+.+.|+|||++++...
T Consensus 141 ~~~~fD~I~~~~~~---------------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAA---------------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCc---------------hhhhHHHHHhcCCCcEEEEEEc
Confidence 33579999987311 2345677899999999988664
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=117.42 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=88.9
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
..+..-.+..-.+|.|+|||+|..|..|+++. |++.|+|||-|++|++.|++++ .+++|..+|..++
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw----P~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w 87 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRW----PDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW 87 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhC----CCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc
Confidence 33333345667899999999999999999996 5699999999999999998754 5677776555444
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.+ ..+.|++++| .++++.++..+.|..+...|.|||.+.+.....
T Consensus 88 ---~p-~~~~dllfaN---------AvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 88 ---KP-EQPTDLLFAN---------AVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred ---CC-CCccchhhhh---------hhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 32 3478999999 466677777899999999999999998876533
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.3e-14 Score=113.41 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=85.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccc-eEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL-VKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~-v~~~~~~~~~l~~~~~~~ 171 (267)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.+++++..++ ...+ +.++..+. .+...+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~~d~---~~~~~~- 88 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCNAKLNN---IRNNGVEVIRSDL---FEPFRG- 88 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHHHHHcC---CCCcceEEEeccc---cccccc-
Confidence 57789999999999999999987 3799999999999999999998766 1112 67766543 222222
Q ss_pred CcEEEEEEeCCCCCCCCCce---------ee---chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSV---------IT---TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~---------~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|++|.++.+...... .. .......+++++.++|||||.+++...
T Consensus 89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 27999999988866321110 00 123457789999999999999987664
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=118.45 Aligned_cols=114 Identities=23% Similarity=0.206 Sum_probs=94.4
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
....+....+.+|++|||.|+|+|.++..||..+++ .++|+++|+.++..+.|++|+++.+ ..+++++..+|.
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~---~G~v~tyE~r~d~~k~A~~Nl~~~~---l~d~v~~~~~Dv- 155 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGP---EGHVTTYEIREDFAKTARENLSEFG---LGDRVTLKLGDV- 155 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCC---CceEEEEEecHHHHHHHHHHHHHhc---cccceEEEeccc-
Confidence 344455567899999999999999999999998875 7999999999999999999999987 455588776444
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+...++ .||.++.|+ +++.++++.+.+.|||||.+++.++
T Consensus 156 --~~~~~~~-~vDav~LDm--------------p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 156 --REGIDEE-DVDAVFLDL--------------PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred --ccccccc-ccCEEEEcC--------------CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 4444333 899999994 5568999999999999999977665
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-14 Score=119.05 Aligned_cols=139 Identities=18% Similarity=0.200 Sum_probs=102.0
Q ss_pred HHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC
Q 041272 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC 160 (267)
Q Consensus 81 ~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~ 160 (267)
.+....+....+.||++|||.|+|+|.++..|++.+++ .++|+.+|+.++.++.|++|++.++ ...++++.+.|
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p---~G~v~t~E~~~~~~~~A~~n~~~~g---l~~~v~~~~~D 100 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGP---TGHVYTYEFREDRAEKARKNFERHG---LDDNVTVHHRD 100 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHHHHTT---CCTTEEEEES-
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCC---CeEEEccccCHHHHHHHHHHHHHcC---CCCCceeEecc
Confidence 34555566678999999999999999999999999975 7999999999999999999999988 56789998866
Q ss_pred hh-hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcc-cCCcEEEEEEecCCCCChhhHHHHHHHHH
Q 041272 161 HS-RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL-IPGGLISMVVYVGHPGGREELEAVEAFAR 238 (267)
Q Consensus 161 ~~-~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 238 (267)
.. +... ...+..+|.|+.|+ +++..++..+.+.| ||||++++.++ ..+++.+.++
T Consensus 101 v~~~g~~-~~~~~~~DavfLDl--------------p~Pw~~i~~~~~~L~~~gG~i~~fsP--------~ieQv~~~~~ 157 (247)
T PF08704_consen 101 VCEEGFD-EELESDFDAVFLDL--------------PDPWEAIPHAKRALKKPGGRICCFSP--------CIEQVQKTVE 157 (247)
T ss_dssp GGCG--S-TT-TTSEEEEEEES--------------SSGGGGHHHHHHHE-EEEEEEEEEES--------SHHHHHHHHH
T ss_pred eeccccc-ccccCcccEEEEeC--------------CCHHHHHHHHHHHHhcCCceEEEECC--------CHHHHHHHHH
Confidence 53 1111 01134799999995 33468999999999 89999977665 3456666666
Q ss_pred hCCCCceEEE
Q 041272 239 SLSVDDWICC 248 (267)
Q Consensus 239 ~l~~~~~~~~ 248 (267)
.+...+|..+
T Consensus 158 ~L~~~gf~~i 167 (247)
T PF08704_consen 158 ALREHGFTDI 167 (247)
T ss_dssp HHHHTTEEEE
T ss_pred HHHHCCCeee
Confidence 6666667443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-13 Score=113.50 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=113.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-hhhh-cCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-RMEE-IVPKS 171 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-~l~~-~~~~~ 171 (267)
.+..+||+|||+|.+++.++..+++ ..|++||.|+.++..|.+|+++++ +.+++.+++.+.+ +... .....
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~----~~v~AiD~S~~Ai~La~eN~qr~~---l~g~i~v~~~~me~d~~~~~~l~~ 220 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQ----CTVTAIDVSKAAIKLAKENAQRLK---LSGRIEVIHNIMESDASDEHPLLE 220 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCC----ceEEEEeccHHHHHHHHHHHHHHh---hcCceEEEeccccccccccccccc
Confidence 4568999999999999999998864 999999999999999999999987 5678888765333 2222 22334
Q ss_pred CcEEEEEEeCCCCCCCCCceeec-----------------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHH
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT-----------------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVE 234 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~-----------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 234 (267)
.+.|++++|++|++..|....+. ......++.-+.|.|+|||.+.+...... +....+.
T Consensus 221 ~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~----~~~~lv~ 296 (328)
T KOG2904|consen 221 GKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERK----EHSYLVR 296 (328)
T ss_pred CceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccc----cCcHHHH
Confidence 68999999999999988654421 13345677888999999999988765211 1224455
Q ss_pred HHHHhCCCCce--EEEEEeeecCCCCceEEEeec
Q 041272 235 AFARSLSVDDW--ICCKFQMLNRPLAPVLVFLFK 266 (267)
Q Consensus 235 ~~~~~l~~~~~--~~~~~~~~~~~~~p~~~~~~k 266 (267)
.|...+..+.+ ..+..++.. .|.++.+.|
T Consensus 297 ~~m~s~~~d~~~~~~v~~Df~~---~~Rfv~i~r 327 (328)
T KOG2904|consen 297 IWMISLKDDSNGKAAVVSDFAG---RPRFVIIHR 327 (328)
T ss_pred HHHHhchhhccchhheeecccC---CcceEEEEe
Confidence 66666555444 334444433 477777765
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=115.25 Aligned_cols=113 Identities=25% Similarity=0.361 Sum_probs=87.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|..+..+++..+. ..+|+++|+++.+++.+++++...+ ...++.++..+..++. ...
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~---~~~ 119 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGK---TGEVVGLDFSEGMLAVGREKLRDLG---LSGNVEFVQGDAEALP---FPD 119 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHhhcccc---cccCeEEEecccccCC---CCC
Confidence 446789999999999999999998642 4799999999999999999987644 2356788776654432 234
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..+|+|+.+. .+++..+...+++++.++|+|||.+++.+...
T Consensus 120 ~~~D~I~~~~---------~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 120 NSFDAVTIAF---------GLRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred CCccEEEEec---------ccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 5799998763 33445566789999999999999998876643
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.6e-14 Score=134.20 Aligned_cols=119 Identities=12% Similarity=0.105 Sum_probs=94.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccc-cceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK-GLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~ 171 (267)
.++.+|||+|||+|.+++.+++. | ..+|++||+|+.+++.|++|++.++ .. .+++++++|..++.... .
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-G----a~~V~~vD~s~~al~~a~~N~~~ng---~~~~~v~~i~~D~~~~l~~~--~ 606 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-G----AKSTTTVDMSNTYLEWAERNFALNG---LSGRQHRLIQADCLAWLKEA--R 606 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-C----CCEEEEEeCCHHHHHHHHHHHHHhC---CCccceEEEEccHHHHHHHc--C
Confidence 35789999999999999999985 2 3579999999999999999999987 32 47999998876654322 3
Q ss_pred CcEEEEEEeCCCCCCCCC--ceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDK--SVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~--~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+||+|++|++++..... ........+..++..+.++|+|||.+++.+..
T Consensus 607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 479999999998765432 12223456678899999999999999887664
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.9e-14 Score=121.39 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=80.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++..+ . ++++...+.... .. +..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~~~~~~----l-~v~~~~~D~~~~---~~-~~~ 184 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEIAEKEN----L-NIRTGLYDINSA---SI-QEE 184 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcC----C-ceEEEEechhcc---cc-cCC
Confidence 3459999999999999999986 4799999999999999999998866 2 677665444322 11 347
Q ss_pred EEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|++.. +++ ..+....+++++.++|+|||++++++.
T Consensus 185 fD~I~~~~---------vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 185 YDFILSTV---------VLMFLNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred ccEEEEcc---------hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99999873 222 235667999999999999999877654
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=118.04 Aligned_cols=110 Identities=24% Similarity=0.303 Sum_probs=85.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||+|||.|.+++.+++..+ ..+++.+|+|..+|+.|++|+..|+ ..+..++. .++.+.... +
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p----~~~vtmvDvn~~Av~~ar~Nl~~N~----~~~~~v~~---s~~~~~v~~--k 224 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSP----QAKLTLVDVNARAVESARKNLAANG----VENTEVWA---SNLYEPVEG--K 224 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCC----CCeEEEEecCHHHHHHHHHhHHHcC----CCccEEEE---ecccccccc--c
Confidence 456999999999999999999964 5899999999999999999999987 44434443 233332222 7
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||.|++|+|+..+. .......++++.++.+.|++||.|.|+..
T Consensus 225 fd~IisNPPfh~G~----~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGK----AVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCc----chhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 99999997653322 22334456999999999999999999988
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-14 Score=124.27 Aligned_cols=107 Identities=24% Similarity=0.292 Sum_probs=82.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..+.+|||||||+|+++..++... ...|+|+|.|+.++..++...+..+ ...+++++..+..++.. +.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-----~~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~lp~----~~ 188 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-----AKLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQLPA----LK 188 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-----CCEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHHCCC----cC
Confidence 367899999999999999999873 2479999999999987655433322 13478888876655532 44
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|++. .++++..++..+++++++.|||||.+++.+.
T Consensus 189 ~FD~V~s~---------~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 189 AFDTVFSM---------GVLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CcCEEEEC---------ChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 79999986 3555667778999999999999999998754
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-13 Score=117.29 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=91.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.+++.+|+. +.+|+|+|+++.+++.|+++++.++ ..++++++++..++.... ...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av~~A~~n~~~~~----l~~v~~~~~D~~~~~~~~--~~~ 240 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAIACAKQSAAELG----LTNVQFQALDSTQFATAQ--GEV 240 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEcCHHHHHHhc--CCC
Confidence 4689999999999999999986 4789999999999999999999987 468999998887654322 236
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEeee
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQML 253 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (267)
||+|+.|++.--. ...+++. ...++|+++++++|.+... .+. ++.+ .+|.+.+...+
T Consensus 241 ~D~Vv~dPPr~G~-----------~~~~~~~-l~~~~~~~ivyvsc~p~t~-----~rd----~~~l--~~y~~~~~~~~ 297 (315)
T PRK03522 241 PDLVLVNPPRRGI-----------GKELCDY-LSQMAPRFILYSSCNAQTM-----AKD----LAHL--PGYRIERVQLF 297 (315)
T ss_pred CeEEEECCCCCCc-----------cHHHHHH-HHHcCCCeEEEEECCcccc-----hhH----Hhhc--cCcEEEEEEEe
Confidence 9999999653100 0233333 3446899999998874321 111 2233 36888777776
Q ss_pred cC
Q 041272 254 NR 255 (267)
Q Consensus 254 ~~ 255 (267)
..
T Consensus 298 Dm 299 (315)
T PRK03522 298 DM 299 (315)
T ss_pred cc
Confidence 65
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-13 Score=124.42 Aligned_cols=138 Identities=17% Similarity=0.210 Sum_probs=97.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.+|++|||+|||+|..+..+++..+ +++|+++|+++.+++.+++++++.+ .+++++++|..++.... .
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~----~~~v~a~D~s~~~l~~~~~n~~~~g-----~~~~~~~~D~~~~~~~~-~ 310 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAP----QAQVVALDIDAQRLERVRENLQRLG-----LKATVIVGDARDPAQWW-D 310 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEcCcccchhhc-c
Confidence 356889999999999999999999863 3799999999999999999999877 23677777765543322 2
Q ss_pred CCcEEEEEEeCCCCCCCC----Cce--eec-------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGGD----KSV--ITT-------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d----~~~--~~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
..+||.|++|+++..... ..+ ... .....++++.+.++|||||+++++++.-.. .+....+..++
T Consensus 311 ~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~--~Ene~~v~~~l 388 (427)
T PRK10901 311 GQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP--EENEQQIKAFL 388 (427)
T ss_pred cCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh--hhCHHHHHHHH
Confidence 347999999987643210 000 001 122467899999999999999988763222 22334556666
Q ss_pred HhC
Q 041272 238 RSL 240 (267)
Q Consensus 238 ~~l 240 (267)
+..
T Consensus 389 ~~~ 391 (427)
T PRK10901 389 ARH 391 (427)
T ss_pred HhC
Confidence 553
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-13 Score=116.25 Aligned_cols=116 Identities=24% Similarity=0.277 Sum_probs=88.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..++...+ ..+|+|+|+|+.+++.|++++.. . ...++.++..+. ..... .
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~----~~~v~~iDis~~~l~~a~~n~~~-~---~~~~i~~~~~d~---~~~~~-~ 173 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERP----DAEVTAVDISPEALAVARRNAKH-G---LGARVEFLQGDW---FEPLP-G 173 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHh-C---CCCcEEEEEccc---cCcCC-C
Confidence 34677999999999999999999864 48999999999999999999882 2 246788887654 22221 3
Q ss_pred CcEEEEEEeCCCCCCCCCc-----ee-e-----------chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKS-----VI-T-----------TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~-----~~-~-----------~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..||+|++|++|++..... +. + .......+++++.++|||||++++..
T Consensus 174 ~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 174 GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4799999999998764321 10 0 12345788999999999999998854
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.6e-13 Score=118.87 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=94.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.+++.+|.. +.+|+|||+++.+++.|++|++.++ ..+++++.++..++.... ..+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~------~~~v~~vE~~~~av~~a~~N~~~~~----~~~~~~~~~d~~~~~~~~--~~~ 300 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP------DTQLTGIEIESEAIACAQQSAQMLG----LDNLSFAALDSAKFATAQ--MSA 300 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc------CCeEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHHhc--CCC
Confidence 5679999999999999999965 4689999999999999999999987 458999988876554321 125
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEeee
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQML 253 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (267)
+|+|+.|+|+- +. ...+++.+.+ ++|++++++++.+. .+..-+..+ .+|.+.....+
T Consensus 301 ~D~vi~DPPr~-G~----------~~~~l~~l~~-~~p~~ivyvsc~p~---------TlaRDl~~L--~gy~l~~~~~~ 357 (374)
T TIGR02085 301 PELVLVNPPRR-GI----------GKELCDYLSQ-MAPKFILYSSCNAQ---------TMAKDIAEL--SGYQIERVQLF 357 (374)
T ss_pred CCEEEECCCCC-CC----------cHHHHHHHHh-cCCCeEEEEEeCHH---------HHHHHHHHh--cCceEEEEEEe
Confidence 89999997752 11 1355666654 69999999998731 222223333 46888887777
Q ss_pred cC
Q 041272 254 NR 255 (267)
Q Consensus 254 ~~ 255 (267)
+.
T Consensus 358 Dm 359 (374)
T TIGR02085 358 DM 359 (374)
T ss_pred cc
Confidence 66
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-13 Score=111.64 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=95.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|..+..+++..+ +.+++|||+|++|++.|+++.. ++.+++++..+ ..+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~----~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~----~~~ 102 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP----FKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFD----PFK 102 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC----CCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccC----CCC
Confidence 356778999999999999999998753 4799999999999999988642 34455544332 234
Q ss_pred CCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecCCC---------CChhh-HHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVGHP---------GGREE-LEAVEAFAR 238 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---------~~~~~-~~~~~~~~~ 238 (267)
+.+||+|+++. +++ .++...++++++.+++ ++.+++..+.... .+..- ......+++
T Consensus 103 ~~sfD~V~~~~---------vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~~~~~~y~~~~~~~~~~d~~~~~~~ 171 (204)
T TIGR03587 103 DNFFDLVLTKG---------VLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPSPVEISYRGNSGRLWKRDFAGEMMD 171 (204)
T ss_pred CCCEEEEEECC---------hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCCceeeeeeCCcchhhhhhHHHHHHH
Confidence 55899999872 332 2356689999999987 5677776653321 11111 112234444
Q ss_pred hCCCCceEEEEEeeecCCCC------ceEEEeecC
Q 041272 239 SLSVDDWICCKFQMLNRPLA------PVLVFLFKR 267 (267)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~------p~~~~~~k~ 267 (267)
..+ .++++.|.|.-+.++ +...+++|+
T Consensus 172 ~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (204)
T TIGR03587 172 RYP--DLKLVDYGFPYHRDPEFPNDDITWFLLEKR 204 (204)
T ss_pred hCC--cceeeeccceeecCCCCCCCCceEEEEecC
Confidence 433 367777766555333 336667664
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=121.41 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=83.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
..++|||+|||+|.++..++++.+ ..+|+++|+|+.|++.|+++++.++ . ..+++..+. .... ...
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p----~~~v~~vDis~~Al~~A~~nl~~n~----l-~~~~~~~D~---~~~~--~~~ 261 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSP----KIRLTLSDVSAAALESSRATLAANG----L-EGEVFASNV---FSDI--KGR 261 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcC----C-CCEEEEccc---cccc--CCC
Confidence 346899999999999999998853 4799999999999999999999876 1 234554332 2222 347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|++|+++... .........++++++.+.|||||.++++..
T Consensus 262 fDlIvsNPPFH~g----~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 262 FDMIISNPPFHDG----IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccEEEECCCccCC----ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 9999999765321 122345678999999999999999999876
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-13 Score=123.33 Aligned_cols=133 Identities=15% Similarity=0.119 Sum_probs=95.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~ 170 (267)
+.++.+|||+|||+|.+++.+|+. ..+|+|+|+++++++.|++|++.++ ..+++++.++..+... ....
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~------~~~V~~vE~~~~av~~a~~n~~~~~----~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQ------AKSVVGIEVVPESVEKAQQNAELNG----IANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHh------CCEEEEEEcCHHHHHHHHHHHHHhC----CCceEEEeCCHHHHHHHHHhc
Confidence 456789999999999999999987 3689999999999999999999887 5789999988865432 2222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF 250 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (267)
+..||+|+.|++.... ...+++.+.+ ++|+++++++|.+. .+..-+..+...+|.+...
T Consensus 360 ~~~~D~vi~dPPr~G~-----------~~~~l~~l~~-l~~~~ivyvsc~p~---------tlard~~~l~~~gy~~~~~ 418 (431)
T TIGR00479 360 GQIPDVLLLDPPRKGC-----------AAEVLRTIIE-LKPERIVYVSCNPA---------TLARDLEFLCKEGYGITWV 418 (431)
T ss_pred CCCCCEEEECcCCCCC-----------CHHHHHHHHh-cCCCEEEEEcCCHH---------HHHHHHHHHHHCCeeEEEE
Confidence 3468999999754210 1466666554 79999988877521 1112222233356877776
Q ss_pred eeecC
Q 041272 251 QMLNR 255 (267)
Q Consensus 251 ~~~~~ 255 (267)
..+..
T Consensus 419 ~~~Dm 423 (431)
T TIGR00479 419 QPVDM 423 (431)
T ss_pred EEecc
Confidence 66654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8e-14 Score=130.48 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=87.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|..+..+++.. |+.+|+|+|+|+.|++.|++++...+ .++.+++++..++...+ ++.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~----P~~kVtGIDIS~~MLe~Ararl~~~g-----~~ie~I~gDa~dLp~~f-ede 486 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEET----EDKRIYGIDISENVIDTLKKKKQNEG-----RSWNVIKGDAINLSSSF-EKE 486 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHhhhcC-----CCeEEEEcchHhCcccc-CCC
Confidence 367899999999999999999875 35899999999999999999876543 46778877766654333 335
Q ss_pred cEEEEEEeCC------CCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLG------YLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~------~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+||+++++.. ++|..+. ........+++++++++|||||++++.+.
T Consensus 487 SFDvVVsn~vLH~L~syIp~~g~--~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 487 SVDTIVYSSILHELFSYIEYEGK--KFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred CEEEEEEchHHHhhhhhcccccc--cccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8999998842 1221111 01135668999999999999999999874
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-13 Score=123.87 Aligned_cols=142 Identities=15% Similarity=0.189 Sum_probs=101.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-C
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-P 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~ 169 (267)
.+++|++|||+|||+|..+..+++.++. .++|+++|+++++++.+++|+++.+ ..+++++..|..++.... .
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~---~g~v~a~D~~~~rl~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~ 321 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGD---QGEIWAVDRSASRLKKLQENAQRLG----LKSIKILAADSRNLLELKPQ 321 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCC---CceEEEEcCCHHHHHHHHHHHHHcC----CCeEEEEeCChhhccccccc
Confidence 3567899999999999999999998754 4799999999999999999999988 567899887776554321 1
Q ss_pred CCCcEEEEEEeCCCC-----CCCCCceee--------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHH
Q 041272 170 KSTAVRLVAFNLGYL-----PGGDKSVIT--------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAF 236 (267)
Q Consensus 170 ~~~~~d~ii~~~~~l-----p~~d~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 236 (267)
....||.|+.|.+.- ......... ......++++++.++|||||+++.+++.-. ..+....+..+
T Consensus 322 ~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~--~~Ene~~v~~~ 399 (434)
T PRK14901 322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH--PAENEAQIEQF 399 (434)
T ss_pred ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC--hhhHHHHHHHH
Confidence 234799999986531 110000000 012247889999999999999988776332 22334556677
Q ss_pred HHhCC
Q 041272 237 ARSLS 241 (267)
Q Consensus 237 ~~~l~ 241 (267)
++..+
T Consensus 400 l~~~~ 404 (434)
T PRK14901 400 LARHP 404 (434)
T ss_pred HHhCC
Confidence 77654
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=122.24 Aligned_cols=117 Identities=21% Similarity=0.150 Sum_probs=89.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..++.. +.+|+|+|+++.|++.|++|++..+ ..+++++.+|..++. ..
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~nl~~~g----~~~i~~~~~D~~~l~---~~ 245 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARINLEHYG----IEDFFVKRGDATKLP---LS 245 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHHHHHHhC----CCCCeEEecchhcCC---cc
Confidence 4678899999999999999887765 4799999999999999999999877 345777776665442 22
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..||.|++|+||-...............++++++.++|||||++++...
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 45799999998873321111011123468899999999999999988765
|
This family is found exclusively in the Archaea. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-14 Score=103.05 Aligned_cols=100 Identities=22% Similarity=0.302 Sum_probs=75.3
Q ss_pred EEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEE
Q 041272 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLV 177 (267)
Q Consensus 98 VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~i 177 (267)
|||+|||+|..+..+++.+.. .|..+++|+|+|++|++.++++....+ .++++++.|..++.. .+.+||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~-~~~~~~~gvD~s~~~l~~~~~~~~~~~-----~~~~~~~~D~~~l~~---~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA-GPSSRVIGVDISPEMLELAKKRFSEDG-----PKVRFVQADARDLPF---SDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTT-----TTSEEEESCTTCHHH---HSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhh-cccceEEEEECCHHHHHHHHHhchhcC-----CceEEEECCHhHCcc---cCCCeeEE
Confidence 799999999999999998621 123799999999999999999998755 388999888877653 34589999
Q ss_pred EEeCCCCCCCCCcee-echhhHHHHHHHHHhcccCCc
Q 041272 178 AFNLGYLPGGDKSVI-TTSETTKMALEAAERILIPGG 213 (267)
Q Consensus 178 i~~~~~lp~~d~~~~-~~~~~~~~~l~~~~~~LkpgG 213 (267)
++... .+. ...+...++++++.++|||||
T Consensus 72 ~~~~~-------~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGL-------SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TT-------GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCC-------ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99421 122 245677899999999999998
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=126.68 Aligned_cols=137 Identities=16% Similarity=0.213 Sum_probs=98.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.+|.+|||+|||+|..+..+++.++. +++|+|+|+|+.+++.+++++++.+ ..++++++++..++. +
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~---~~~V~avD~s~~~l~~~~~~~~~~g----~~~v~~~~~Da~~~~----~ 315 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQN---RGQITAVDRYPQKLEKIRSHASALG----ITIIETIEGDARSFS----P 315 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHhC----CCeEEEEeCcccccc----c
Confidence 3467899999999999999999988754 4799999999999999999999887 457888887665432 2
Q ss_pred CCcEEEEEEeCCCCCCC------CCc-------eeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGG------DKS-------VITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~------d~~-------~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
+..||.|+.|++..... +.. +.+......+++.++.+.|||||+++++++.-.+ .+....+..++
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~--~Ene~~v~~~l 393 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP--EENELQIEAFL 393 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh--hhHHHHHHHHH
Confidence 34799999986542211 000 0001123457899999999999999998874322 22244556676
Q ss_pred HhC
Q 041272 238 RSL 240 (267)
Q Consensus 238 ~~l 240 (267)
+..
T Consensus 394 ~~~ 396 (445)
T PRK14904 394 QRH 396 (445)
T ss_pred HhC
Confidence 654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.7e-14 Score=119.15 Aligned_cols=101 Identities=21% Similarity=0.248 Sum_probs=78.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++... ..++.++..++ ...+.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~~---------~~~~~~d~~~~---~~~~~~ 103 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDAA---------DHYLAGDIESL---PLATAT 103 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCCC---------CCEEEcCcccC---cCCCCc
Confidence 4679999999999999998875 47999999999999999886432 34555554433 334457
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
||+|+++. .+++..+...+++++.++|||||.++++.+.
T Consensus 104 fD~V~s~~---------~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 104 FDLAWSNL---------AVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred EEEEEECc---------hhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999984 3444556789999999999999999998764
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=121.19 Aligned_cols=108 Identities=20% Similarity=0.205 Sum_probs=81.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++++|||+|||+|+++..++... ...|+|||.|+.|+.+++...+..+ ...++.+...+.+++.. .
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g-----~~~v~GiDpS~~ml~q~~~~~~~~~---~~~~v~~~~~~ie~lp~----~ 186 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHG-----AKSLVGIDPTVLFLCQFEAVRKLLD---NDKRAILEPLGIEQLHE----L 186 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcC-----CCEEEEEcCCHHHHHHHHHHHHHhc---cCCCeEEEECCHHHCCC----C
Confidence 3567899999999999999988762 2479999999999987654332211 12467777655555432 2
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|++. .++++..++..++++++++|||||.|++.+.
T Consensus 187 ~~FD~V~s~---------gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 187 YAFDTVFSM---------GVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCcCEEEEc---------chhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 379999988 4566667778999999999999999998754
|
Known examples to date are restricted to the proteobacteria. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=115.60 Aligned_cols=111 Identities=23% Similarity=0.290 Sum_probs=86.8
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+.++.+|||+|||+|.++..+++.+++ .++|+|+|+++.+++.|+++.... ..++.++..+..++. .
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~---~~~v~~~d~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~---~ 83 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGP---EGRVVGIDRSEAMLALAKERAAGL-----GPNVEFVRGDADGLP---F 83 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHhhCC-----CCceEEEecccccCC---C
Confidence 35678899999999999999999998643 579999999999999999984332 357788776554322 2
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+..||+|+++. +.++..+...+++++.++|||||.+++..+
T Consensus 84 ~~~~~D~v~~~~---------~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 84 PDGSFDAVRSDR---------VLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCceEEEEec---------hhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 345799999873 444455678899999999999999998764
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=124.82 Aligned_cols=140 Identities=18% Similarity=0.210 Sum_probs=102.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+++|.+|||+|||+|..+..+++.++. +++|+++|+++.+++.+++++++.+ ..+++++..|..++....
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~Dis~~rl~~~~~n~~r~g----~~~v~~~~~Da~~l~~~~-- 304 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKD---QGKILAVDISREKIQLVEKHAKRLK----LSSIEIKIADAERLTEYV-- 304 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhhhhhhh--
Confidence 4568899999999999999999998754 5799999999999999999999987 457888887776654322
Q ss_pred CCcEEEEEEeCCCCCCCCCc----e-ee--------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGGDKS----V-IT--------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~----~-~~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
+..||.|+.|.++...+... + .. ......+++.++.+.|||||+++.+++.-. ..+....+..++
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~--~eEne~vv~~fl 382 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT--KEENTEVVKRFV 382 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC--hhhCHHHHHHHH
Confidence 23699999997663332100 0 00 112447889999999999999988877422 233345556666
Q ss_pred HhCC
Q 041272 238 RSLS 241 (267)
Q Consensus 238 ~~l~ 241 (267)
+..+
T Consensus 383 ~~~~ 386 (431)
T PRK14903 383 YEQK 386 (431)
T ss_pred HhCC
Confidence 6533
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-13 Score=124.07 Aligned_cols=138 Identities=21% Similarity=0.217 Sum_probs=96.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|..+..+++..+. .++|+++|+++.+++.+++|+++.+ ..+++++++|..++...+.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~---~~~v~avDi~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~~~~-- 318 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKN---TGKVVALDIHEHKLKLIEENAKRLG----LTNIETKALDARKVHEKFA-- 318 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCCcccccchhc--
Confidence 567889999999999999999998743 5799999999999999999999887 4568888877655432222
Q ss_pred CcEEEEEEeCCCCCCCC------Cceeec-------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHH
Q 041272 172 TAVRLVAFNLGYLPGGD------KSVITT-------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFAR 238 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d------~~~~~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 238 (267)
..||.|++|++.....- ...... .....++++++.++|||||.++.+++.-.. .+....+..+++
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~--~Ene~vv~~~l~ 396 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK--EENEEVIEAFLE 396 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh--hhhHHHHHHHHH
Confidence 46999999976422110 000001 112357899999999999999876553222 122334555665
Q ss_pred hC
Q 041272 239 SL 240 (267)
Q Consensus 239 ~l 240 (267)
..
T Consensus 397 ~~ 398 (444)
T PRK14902 397 EH 398 (444)
T ss_pred hC
Confidence 43
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=121.42 Aligned_cols=116 Identities=17% Similarity=0.263 Sum_probs=91.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..+..+||||||+|.++..+|+.. |+..++|+|+++.+++.|.+++...+ ..|+.+++++...+...++ +.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~----P~~~~iGIEI~~~~i~~a~~ka~~~g----L~NV~~i~~DA~~ll~~~~-~~ 191 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNN----PNKLFIGIEIHTPSIEQVLKQIELLN----LKNLLIINYDARLLLELLP-SN 191 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHhhhhCC-CC
Confidence 356799999999999999999986 45899999999999999999998877 5789999988876655443 45
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+|.|+.+++. |+.... |..-....+++++.++|+|||.+.+.+-
T Consensus 192 s~D~I~lnFPd-PW~Kkr--HRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPV-PWDKKP--HRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCC-Cccccc--hhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 89999998643 322111 1111236899999999999999988654
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-13 Score=121.73 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=110.3
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
..++..+..++ ...++++|||+.||.|.+++.+|+.. .+|+|+|+++++++.|++|++.++ ..|++|+
T Consensus 279 ekl~~~a~~~~--~~~~~~~vlDlYCGvG~f~l~lA~~~------~~V~gvEi~~~aV~~A~~NA~~n~----i~N~~f~ 346 (432)
T COG2265 279 EKLYETALEWL--ELAGGERVLDLYCGVGTFGLPLAKRV------KKVHGVEISPEAVEAAQENAAANG----IDNVEFI 346 (432)
T ss_pred HHHHHHHHHHH--hhcCCCEEEEeccCCChhhhhhcccC------CEEEEEecCHHHHHHHHHHHHHcC----CCcEEEE
Confidence 55555555554 23577899999999999999999773 799999999999999999999998 6779999
Q ss_pred ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 158 ~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
.++.+++.........+|.|+.|++ ..-.. +.+++.+.+. +|..++|++|.+ ..+.+-+
T Consensus 347 ~~~ae~~~~~~~~~~~~d~VvvDPP---R~G~~--------~~~lk~l~~~-~p~~IvYVSCNP---------~TlaRDl 405 (432)
T COG2265 347 AGDAEEFTPAWWEGYKPDVVVVDPP---RAGAD--------REVLKQLAKL-KPKRIVYVSCNP---------ATLARDL 405 (432)
T ss_pred eCCHHHHhhhccccCCCCEEEECCC---CCCCC--------HHHHHHHHhc-CCCcEEEEeCCH---------HHHHHHH
Confidence 9888877765545567899999953 21111 4677777765 999999999984 2344445
Q ss_pred HhCCCCceEEEEEeeecC
Q 041272 238 RSLSVDDWICCKFQMLNR 255 (267)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~ 255 (267)
..+...+|.+.+...++.
T Consensus 406 ~~L~~~gy~i~~v~~~Dm 423 (432)
T COG2265 406 AILASTGYEIERVQPFDM 423 (432)
T ss_pred HHHHhCCeEEEEEEEecc
Confidence 555566777777766654
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=123.49 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=81.3
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...++++.+|||||||+|.++..+++.. +.+|+|+|+|+++++.|++++.. .++++...+..++
T Consensus 162 ~l~l~~g~rVLDIGcG~G~~a~~la~~~-----g~~V~giDlS~~~l~~A~~~~~~-------l~v~~~~~D~~~l---- 225 (383)
T PRK11705 162 KLQLKPGMRVLDIGCGWGGLARYAAEHY-----GVSVVGVTISAEQQKLAQERCAG-------LPVEIRLQDYRDL---- 225 (383)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHHhcc-------CeEEEEECchhhc----
Confidence 3456889999999999999999999875 36999999999999999998753 2366665544332
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..||.|++.. +.++ ......+++++.++|||||++++.+.
T Consensus 226 --~~~fD~Ivs~~---------~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 --NGQFDRIVSVG---------MFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred --CCCCCEEEEeC---------chhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 24699998762 2222 24557899999999999999998765
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-12 Score=102.22 Aligned_cols=114 Identities=20% Similarity=0.334 Sum_probs=92.3
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
...+||||||+|..+..|++..++ +..+.++|+++++.+..++.++.|+ .++..++ .|+...+.+ .++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~---~~~~latDiNp~A~~~Tl~TA~~n~-----~~~~~V~---tdl~~~l~~-~~V 111 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGP---QALYLATDINPEALEATLETARCNR-----VHIDVVR---TDLLSGLRN-ESV 111 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCC---CceEEEecCCHHHHHHHHHHHHhcC-----Cccceee---hhHHhhhcc-CCc
Confidence 568999999999999999998875 7889999999999999999999876 4566665 444554444 589
Q ss_pred EEEEEeCCCCCCCCCceee------------chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVIT------------TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~------------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|++++|++|.|..+..+-. ..+-..+++.++-.+|.|.|++|++..
T Consensus 112 DvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 112 DVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 9999999999998776521 123346777788889999999999876
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-12 Score=116.30 Aligned_cols=127 Identities=13% Similarity=0.174 Sum_probs=91.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC----
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK---- 170 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~---- 170 (267)
+.+|||++||+|.+++.+++.. .+|+|||+++.+++.|++|++.++ ..+++++.++..++......
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~------~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~ 276 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF------RRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSAEEFTQAMNGVREF 276 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC------CEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHhhcccc
Confidence 3579999999999999999873 689999999999999999999987 46899999888765332110
Q ss_pred ---------CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 171 ---------STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 171 ---------~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
...+|+|+.|+|.- +. ..++++.+.+ |++++|++|.+ ..+..-+..+.
T Consensus 277 ~~~~~~~~~~~~~D~v~lDPPR~-G~----------~~~~l~~l~~---~~~ivyvSC~p---------~tlarDl~~L~ 333 (362)
T PRK05031 277 NRLKGIDLKSYNFSTIFVDPPRA-GL----------DDETLKLVQA---YERILYISCNP---------ETLCENLETLS 333 (362)
T ss_pred cccccccccCCCCCEEEECCCCC-CC----------cHHHHHHHHc---cCCEEEEEeCH---------HHHHHHHHHHc
Confidence 22589999997651 10 1355555544 78999998873 11222222332
Q ss_pred CCceEEEEEeeecC
Q 041272 242 VDDWICCKFQMLNR 255 (267)
Q Consensus 242 ~~~~~~~~~~~~~~ 255 (267)
. +|.+.+...+..
T Consensus 334 ~-gY~l~~v~~~Dm 346 (362)
T PRK05031 334 Q-THKVERFALFDQ 346 (362)
T ss_pred C-CcEEEEEEEccc
Confidence 2 688888777766
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-13 Score=111.11 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=78.7
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c-
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I- 167 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~- 167 (267)
++++.+|||+|||+|.++..+++..+. .++|+|||+++ | .. ..+++++++|..+... +
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~---~~~V~aVDi~~-~----------~~----~~~v~~i~~D~~~~~~~~~i~ 110 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGD---KGRVIACDILP-M----------DP----IVGVDFLQGDFRDELVLKALL 110 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCC---CceEEEEeccc-c----------cC----CCCcEEEecCCCChHHHHHHH
Confidence 578899999999999999999998754 57999999998 1 11 3468888887766421 0
Q ss_pred -CCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 168 -VPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
...+..+|+|++++......+..+.. .......+++++.++|||||.+++.++.
T Consensus 111 ~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 111 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred HHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 11245799999986332222111111 0111357899999999999999998874
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=129.44 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=95.5
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc------------ccccceEEEecChh
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK------------AEKGLVKLFNMCHS 162 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~------------~~~~~v~~~~~~~~ 162 (267)
+.+|||+|||+|.+++.+++..+ ..+|+|+|+|+++++.|++|++.++.+ ....+++++++|..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~----~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~ 194 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL----PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL 194 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh
Confidence 46999999999999999999864 479999999999999999999876421 11247899886653
Q ss_pred hhhhcCCC-CCcEEEEEEeCCCCCCCCCcee------ec-----------------------hhhHHHHHHHHHhcccCC
Q 041272 163 RMEEIVPK-STAVRLVAFNLGYLPGGDKSVI------TT-----------------------SETTKMALEAAERILIPG 212 (267)
Q Consensus 163 ~l~~~~~~-~~~~d~ii~~~~~lp~~d~~~~------~~-----------------------~~~~~~~l~~~~~~Lkpg 212 (267)
+.... +.+||+|++|++|++..+...+ +. ...+++++.++.++|+||
T Consensus 195 ---~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pg 271 (1082)
T PLN02672 195 ---GYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPM 271 (1082)
T ss_pred ---hhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCC
Confidence 32222 2369999999999987653211 00 122478888999999999
Q ss_pred cEEEEEEecCCCCChhhHHHHH-HHHHh
Q 041272 213 GLISMVVYVGHPGGREELEAVE-AFARS 239 (267)
Q Consensus 213 G~l~i~~~~~~~~~~~~~~~~~-~~~~~ 239 (267)
|++++.... ...+.+. +.++.
T Consensus 272 G~l~lEiG~------~q~~~v~~~l~~~ 293 (1082)
T PLN02672 272 GIMIFNMGG------RPGQAVCERLFER 293 (1082)
T ss_pred CEEEEEECc------cHHHHHHHHHHHH
Confidence 999875542 2345555 35554
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=119.94 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=95.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.+|.+|||+|||+|..+..+++.++ +++|+++|+++++++.+++|+++.+ ...++.+..++....... .+
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~----~~~v~a~D~~~~~l~~~~~n~~r~g---~~~~v~~~~~d~~~~~~~-~~ 306 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAP----QAQVVALDIHEHRLKRVYENLKRLG---LTIKAETKDGDGRGPSQW-AE 306 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEecccccccccc-cc
Confidence 456789999999999999999999874 3799999999999999999999877 222333354443222211 13
Q ss_pred CCcEEEEEEeCCCCCCCC----Cce-e--------echhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGGD----KSV-I--------TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d----~~~-~--------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
..+||.|+.|.+.-..+- ..+ . .......++|+++.++|||||+++++++.-.+ .+....+..++
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~--~Ene~~v~~~l 384 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP--EENSEQIKAFL 384 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh--hhCHHHHHHHH
Confidence 457999999865422210 000 0 01123478999999999999999988774322 23344556676
Q ss_pred HhCC
Q 041272 238 RSLS 241 (267)
Q Consensus 238 ~~l~ 241 (267)
+..+
T Consensus 385 ~~~~ 388 (426)
T TIGR00563 385 QEHP 388 (426)
T ss_pred HhCC
Confidence 6554
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-13 Score=111.43 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=78.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc--------ccccccceEEEecChhhh
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT--------SKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~--------~~~~~~~v~~~~~~~~~l 164 (267)
.++.+|||+|||.|..+..||++ +.+|+|||+|+.+++.+.+...... ......+++++++|..++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 57789999999999999999987 5799999999999998644221100 000124677777666544
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.... ...||.|+-...+ ++..++....+++.+.++|||||++++.++.
T Consensus 107 ~~~~--~~~fD~i~D~~~~-------~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 107 TAAD--LGPVDAVYDRAAL-------IALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred Cccc--CCCcCEEEechhh-------ccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 3211 1357777654211 1113456678999999999999987777653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-13 Score=106.27 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=76.6
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
-.++||+|||.|.+|..||.++ .+++++|+|+.+++.|++++.. ..+|++++.+. ....+ ...|
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC------d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dv---p~~~P-~~~F 107 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC------DRLLAVDISPRALARARERLAG------LPHVEWIQADV---PEFWP-EGRF 107 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE------EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-T---TT----SS-E
T ss_pred cceeEecCCCccHHHHHHHHhh------CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcC---CCCCC-CCCe
Confidence 3689999999999999999995 5899999999999999999986 46899987554 44333 4589
Q ss_pred EEEEEeCCCCCCCCCceee---chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVIT---TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|+|+.. .+.+ ..++...+++.+.+.|+|||.+++-.+
T Consensus 108 DLIV~S---------EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 108 DLIVLS---------EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EEEEEE---------S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eEEEEe---------hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999887 2332 235677899999999999999998765
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=113.18 Aligned_cols=109 Identities=12% Similarity=0.172 Sum_probs=88.7
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-C-
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-P- 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~- 169 (267)
+.+..+|||+|||+|+.++.++..++. +++|+++|+++++++.|++++++++ ...+++++.++..+....+ .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~---~g~v~tiD~d~~~~~~A~~n~~~~g---l~~~i~~~~gda~~~L~~l~~~ 139 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPE---DGRITAIDIDKEAYEVGLEFIKKAG---VDHKINFIQSDALSALDQLLNN 139 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEccHHHHHHHHHhC
Confidence 446789999999999999999988764 6899999999999999999999988 4578999998887654322 1
Q ss_pred -CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 170 -KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 170 -~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
+..+||+|+.+.. .+.+..+++.+.++|+|||++++.
T Consensus 140 ~~~~~fD~VfiDa~------------k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 140 DPKPEFDFAFVDAD------------KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCCCCEEEECCC------------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 1347999998831 245568899999999999998764
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.4e-13 Score=108.29 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=77.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
+..++||+|||.|+.++.||++ +..|+++|+|+.+++.+++.+++.+ -.++....| +.+...+ ..
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a~~~~-----l~i~~~~~D---l~~~~~~-~~ 94 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLAEEEG-----LDIRTRVAD---LNDFDFP-EE 94 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHHHHTT------TEEEEE-B---GCCBS-T-TT
T ss_pred CCCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHhhcC-----ceeEEEEec---chhcccc-CC
Confidence 4679999999999999999998 6899999999999999999887766 236655533 3333332 37
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+|+|++.... ....++...++++++.+.++|||+++++++.
T Consensus 95 yD~I~st~v~-------~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 95 YDFIVSTVVF-------MFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEEEEEESSG-------GGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cCEEEEEEEe-------ccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 9999886211 0113556678999999999999999987663
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=107.04 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=76.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..+++. +.+|+|+|+++.+++. .. .....+. .. .....+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~------~~-----~~~~~~~---~~---~~~~~~ 76 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEK------RN-----VVFDNFD---AQ---DPPFPD 76 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHH------TT-----SEEEEEE---CH---THHCHS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhh------hh-----hhhhhhh---hh---hhhccc
Confidence 567889999999999999999776 3699999999999988 10 1111111 11 111234
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..||+|+++ .++++.+++..+++++.++|||||++++.+...
T Consensus 77 ~~fD~i~~~---------~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 77 GSFDLIICN---------DVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SSEEEEEEE---------SSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cchhhHhhH---------HHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 589999999 577777789999999999999999999998753
|
... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-13 Score=112.71 Aligned_cols=103 Identities=25% Similarity=0.400 Sum_probs=81.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||+|||+|.++..+++..+ ..+++|+|+++++++.++++.. .++.++.++..+. ..++..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~----~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~---~~~~~~ 98 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFP----QAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKL---PLEDSS 98 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCC----CCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhC---CCCCCc
Confidence 457999999999999999998853 4789999999999999988653 3567777655443 223457
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|+++. +.++..+...+++++.++|||||.+++..+
T Consensus 99 fD~vi~~~---------~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 99 FDLIVSNL---------ALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred eeEEEEhh---------hhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99999983 445555677899999999999999998875
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-12 Score=106.31 Aligned_cols=109 Identities=23% Similarity=0.357 Sum_probs=85.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|..+..+++..+. ..+++++|+++.+++.++++.. . ..++.++.++..++. .+.
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~---~~~~~~iD~~~~~~~~~~~~~~--~----~~~i~~~~~d~~~~~---~~~ 104 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPD---RGKVTGVDFSSEMLEVAKKKSE--L----PLNIEFIQADAEALP---FED 104 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCC---CceEEEEECCHHHHHHHHHHhc--c----CCCceEEecchhcCC---CCC
Confidence 346889999999999999999988642 2689999999999999998875 1 356778776654432 234
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..||+|+++. ..++..+...+++++.+.|+|||++++..+.
T Consensus 105 ~~~D~i~~~~---------~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 105 NSFDAVTIAF---------GLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CcEEEEEEee---------eeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 5799998873 3344556779999999999999999987764
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=113.92 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=81.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|..+..+++.+.. +.+|+|+|+|++|++.|++++.... ...++.++++|..+.......
T Consensus 60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~---~~~~~~iDiS~~mL~~a~~~l~~~~---p~~~v~~i~gD~~~~~~~~~~ 133 (301)
T TIGR03438 60 ATGAGCELVELGSGSSRKTRLLLDALRQ---PARYVPIDISADALKESAAALAADY---PQLEVHGICADFTQPLALPPE 133 (301)
T ss_pred hhCCCCeEEecCCCcchhHHHHHHhhcc---CCeEEEEECCHHHHHHHHHHHHhhC---CCceEEEEEEcccchhhhhcc
Confidence 3567789999999999999999988642 3689999999999999999987632 123466677776554333222
Q ss_pred C--CcEEEEEEeCCCCCCCCCcee-echhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 S--TAVRLVAFNLGYLPGGDKSVI-TTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~--~~~d~ii~~~~~lp~~d~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. .+..++++.. .+. ..+++..++++++++.|+|||.+++...
T Consensus 134 ~~~~~~~~~~~gs--------~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 134 PAAGRRLGFFPGS--------TIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred cccCCeEEEEecc--------cccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 1 1233333321 111 1355677999999999999999987553
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=110.56 Aligned_cols=126 Identities=13% Similarity=0.193 Sum_probs=89.6
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-C-----
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-P----- 169 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~----- 169 (267)
.+|||+|||+|.+++.+++.. .+|+|||+++++++.|++|++.++ ..+++++.++..++.... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~------~~v~~vE~~~~av~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~ 268 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF------RRVLATEIAKPSVNAAQYNIAANN----IDNVQIIRMSAEEFTQAMNGVREFR 268 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC------CEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEEcCHHHHHHHHhhccccc
Confidence 479999999999999999874 589999999999999999999987 568999998887654321 0
Q ss_pred --C-----CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCC
Q 041272 170 --K-----STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSV 242 (267)
Q Consensus 170 --~-----~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (267)
. ...+|+|+.|+|. .+ -...+++.+. +|++++|++|.+ ..+..-+..+..
T Consensus 269 ~~~~~~~~~~~~d~v~lDPPR--~G---------~~~~~l~~l~---~~~~ivYvsC~p---------~tlaRDl~~L~~ 325 (353)
T TIGR02143 269 RLKGIDLKSYNCSTIFVDPPR--AG---------LDPDTCKLVQ---AYERILYISCNP---------ETLKANLEQLSE 325 (353)
T ss_pred cccccccccCCCCEEEECCCC--CC---------CcHHHHHHHH---cCCcEEEEEcCH---------HHHHHHHHHHhc
Confidence 1 1237999999753 11 0135555554 479999999873 122222333332
Q ss_pred CceEEEEEeeecC
Q 041272 243 DDWICCKFQMLNR 255 (267)
Q Consensus 243 ~~~~~~~~~~~~~ 255 (267)
+|.+.....++.
T Consensus 326 -~Y~l~~v~~~Dm 337 (353)
T TIGR02143 326 -THRVERFALFDQ 337 (353)
T ss_pred -CcEEEEEEEccc
Confidence 288888777766
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=108.37 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=71.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||||..+..+++.. +.+|+|+|+|++|++.|+++. .+++++.. ....++.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-----~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~---~lp~~d~ 109 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-----KYYVVALDYAENMLKMNLVAD------------DKVVGSFE---ALPFRDK 109 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-----CCEEEEECCCHHHHHHHHhcc------------ceEEechh---hCCCCCC
Confidence 457899999999999999999874 268999999999999998631 12444443 3344566
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg 212 (267)
+||+|++.. .+++.++..++++++.|+|||.
T Consensus 110 sfD~v~~~~---------~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 110 SFDVVMSSF---------ALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CEEEEEecC---------hhhccCCHHHHHHHHHHHhcCc
Confidence 899999984 3445567789999999999994
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=107.63 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=88.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCC-
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPK- 170 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~- 170 (267)
....+||||||++|+.++.+|+.++. +++|+.+|++++..+.|++++++.+ ...+++++.++..+... +...
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~---~g~i~tiE~~~~~~~~A~~~~~~ag---~~~~I~~~~gda~~~l~~l~~~~ 117 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPE---DGKITTIEIDPERAEIARENFRKAG---LDDRIEVIEGDALEVLPELANDG 117 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTT---TSEEEEEESSHHHHHHHHHHHHHTT---GGGGEEEEES-HHHHHHHHHHTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcc---cceEEEecCcHHHHHHHHHHHHhcC---CCCcEEEEEeccHhhHHHHHhcc
Confidence 35569999999999999999998875 6899999999999999999999988 56799999988876544 2222
Q ss_pred -CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 171 -STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 171 -~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
..+||+|+.+. ....+..+++.+.++|+|||.+++-
T Consensus 118 ~~~~fD~VFiDa------------~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 118 EEGQFDFVFIDA------------DKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TTTSEEEEEEES------------TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCceeEEEEcc------------cccchhhHHHHHhhhccCCeEEEEc
Confidence 24799999983 2456788999999999999999774
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=113.19 Aligned_cols=98 Identities=21% Similarity=0.350 Sum_probs=73.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||+|||+|.++..+++.++. ....+|+|+|+|+.|++.|+++. .++.+..++..++ ..++.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~l---p~~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPE-ITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRL---PFADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhccc-ccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccC---CCcCCc
Confidence 4578999999999999999987642 01247999999999999997742 4566766554433 334568
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|++.+. ...++++.|+|||||+++++.+
T Consensus 152 fD~I~~~~~----------------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 152 LDAIIRIYA----------------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred eeEEEEecC----------------CCCHHHHHhhccCCCEEEEEeC
Confidence 999998631 1346789999999999998765
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-12 Score=112.56 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=91.4
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
..+.+.+..++. ..++ +|||+.||.|.+++.||+.. .+|+|||+++++++.|++|++.++ ..|++|+
T Consensus 183 ~~l~~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~------~~V~gvE~~~~av~~A~~Na~~N~----i~n~~f~ 249 (352)
T PF05958_consen 183 EKLYEQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKA------KKVIGVEIVEEAVEDARENAKLNG----IDNVEFI 249 (352)
T ss_dssp HHHHHHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCS------SEEEEEES-HHHHHHHHHHHHHTT------SEEEE
T ss_pred HHHHHHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhC------CeEEEeeCCHHHHHHHHHHHHHcC----CCcceEE
Confidence 555555555442 2334 89999999999999999884 789999999999999999999998 7899999
Q ss_pred ecChhhhhhcC-------------CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 158 NMCHSRMEEIV-------------PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 158 ~~~~~~l~~~~-------------~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
.++.+++.... .....+|.++.|+|= .-.. ..+++.+. ++.-++|++|.+.
T Consensus 250 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR---~G~~--------~~~~~~~~---~~~~ivYvSCnP~-- 313 (352)
T PF05958_consen 250 RGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPR---AGLD--------EKVIELIK---KLKRIVYVSCNPA-- 313 (352)
T ss_dssp E--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---T---T-SC--------HHHHHHHH---HSSEEEEEES-HH--
T ss_pred EeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC---CCch--------HHHHHHHh---cCCeEEEEECCHH--
Confidence 87766543211 113368999999532 1111 24444443 3456888888731
Q ss_pred CChhhHHHHHHHHHhCCCCceEEEEEeeecC-C---CCceEEEeecC
Q 041272 225 GGREELEAVEAFARSLSVDDWICCKFQMLNR-P---LAPVLVFLFKR 267 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~---~~p~~~~~~k~ 267 (267)
.-.+-+ ..+. .+|.+.....+.. + .-..++++.||
T Consensus 314 ---tlaRDl----~~L~-~~y~~~~v~~~DmFP~T~HvE~v~lL~rk 352 (352)
T PF05958_consen 314 ---TLARDL----KILK-EGYKLEKVQPVDMFPQTHHVETVALLERK 352 (352)
T ss_dssp ---HHHHHH----HHHH-CCEEEEEEEEE-SSTTSS--EEEEEEEE-
T ss_pred ---HHHHHH----HHHh-hcCEEEEEEEeecCCCCCcEEEEEEEEeC
Confidence 112222 2222 2698888888776 3 23356666654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-12 Score=104.47 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=88.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe-cChhhhhhcCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN-MCHSRMEEIVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~~ 170 (267)
+.+..+|||||++.|+.++.||..++. +++++++|+++++.+.|++|+++.+ ...+++++. ++..+..+- ..
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag---~~~~i~~~~~gdal~~l~~-~~ 129 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAG---VDDRIELLLGGDALDVLSR-LL 129 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcC---CcceEEEEecCcHHHHHHh-cc
Confidence 457789999999999999999999875 5899999999999999999999998 566688887 355544332 22
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
..+||+|+.+. ....+.++++.+.++|+|||++++-
T Consensus 130 ~~~fDliFIDa------------dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 130 DGSFDLVFIDA------------DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred CCCccEEEEeC------------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 45899999883 2456689999999999999999774
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-12 Score=108.38 Aligned_cols=108 Identities=12% Similarity=0.203 Sum_probs=89.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-C--
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-P-- 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~-- 169 (267)
.+..+|||||||+|+.++.+|+.+++ +++|+++|.+++..+.|++++++.| ...+++++.++..+....+ .
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~---~G~V~TiE~d~e~~~~Ar~n~~~aG---l~~~I~li~GdA~e~L~~l~~~~ 190 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPE---SGCLVACERDSNSLEVAKRYYELAG---VSHKVNVKHGLAAESLKSMIQNG 190 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcc
Confidence 45789999999999999999998765 6789999999999999999999988 5678999998887654322 1
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
...+||+|+.+.. ...+..+++.+.++|+|||.+++-
T Consensus 191 ~~~~FD~VFIDa~------------K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 191 EGSSYDFAFVDAD------------KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred cCCCCCEEEECCC------------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 1247999999831 356788999999999999999774
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-12 Score=109.53 Aligned_cols=116 Identities=6% Similarity=0.125 Sum_probs=86.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
++..+|||||||+|.++..+++..+ +.+|+++|+++++++.|++++...+ ...+++++.+|..+...... .
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p----~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~~--~ 135 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP----DTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVHR--H 135 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhCC--C
Confidence 4567999999999999999998854 5899999999999999999876543 24689999888766544322 3
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.||+|+.|... .. .. ...-...++++++.+.|+|||++++..+..
T Consensus 136 ~yD~I~~D~~~---~~-~~-~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 136 STDVILVDGFD---GE-GI-IDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCEEEEeCCC---CC-CC-ccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 69999998411 00 00 000123689999999999999999876643
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-12 Score=111.42 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=83.6
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|.++..++++. |+.+++++|. +.+++.+++++.+.+ ..++++++.+|..+. ..+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~----p~~~~~~~D~-~~~~~~a~~~~~~~g---l~~rv~~~~~d~~~~---~~~- 214 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF----PELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE---SYP- 214 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC----CCCEEEEEec-HHHHHHHHHHHHhCC---ccceEEEEecCccCC---CCC-
Confidence 4677899999999999999999985 4589999997 789999999998877 456899988665321 112
Q ss_pred CcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+|+++.. .++|. .+...++++++++.|||||++++.++.
T Consensus 215 -~~D~v~~~---------~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 215 -EADAVLFC---------RILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred -CCCEEEeE---------hhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 24777655 23332 234468999999999999999998763
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=110.31 Aligned_cols=109 Identities=12% Similarity=0.088 Sum_probs=82.6
Q ss_pred CCCEEEEecCCCChH-HHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh-ccccccccceEEEecChhhhhhcCCCC
Q 041272 94 KGDTVVDATCGNGYD-TLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK-TTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~-~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~-~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+..+|+|||||.|.+ ++.++.... |+++++|+|+++++++.|++.++. .+ +..+++|..++..+.. ...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~---p~~~~~giD~d~~ai~~Ar~~~~~~~g---L~~rV~F~~~Da~~~~---~~l 193 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHL---PTTSFHNFDIDPSANDVARRLVSSDPD---LSKRMFFHTADVMDVT---ESL 193 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHhhhccC---ccCCcEEEECchhhcc---ccc
Confidence 678999999997744 444554432 468999999999999999999964 44 4578999987775532 223
Q ss_pred CcEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|++.. ++. ..+++.++++++.+.|+|||.+++-..
T Consensus 194 ~~FDlVF~~A---------Li~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 194 KEYDVVFLAA---------LVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred CCcCEEEEec---------ccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 4799999882 222 236778999999999999999988653
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=105.54 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=87.2
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
...+||||||.|.+...+|+.. |+..++|||++...+..|.+++...+ ..|+.++++++..+.....++.++
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~----Pd~n~iGiE~~~~~v~~a~~~~~~~~----l~Nv~~~~~da~~~l~~~~~~~~v 89 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN----PDINFIGIEIRKKRVAKALRKAEKRG----LKNVRFLRGDARELLRRLFPPGSV 89 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS----TTSEEEEEES-HHHHHHHHHHHHHHT----TSSEEEEES-CTTHHHHHSTTTSE
T ss_pred CCeEEEecCCCCHHHHHHHHHC----CCCCEEEEecchHHHHHHHHHHHhhc----ccceEEEEccHHHHHhhcccCCch
Confidence 3499999999999999999985 56999999999999999999999887 799999999888755544445689
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|.|..+++- |.+.....-..-....+++.+.++|+|||.+.+.+-
T Consensus 90 ~~i~i~FPD-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 90 DRIYINFPD-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp EEEEEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred heEEEeCCC-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 999999654 222111110111236899999999999999988764
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-11 Score=105.71 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=71.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.+++.+||++||.|..+..+++.+++ .++|+|+|.+++|++.|++++.. . .++++++++..++......
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~---~g~VigiD~D~~al~~ak~~L~~-~-----~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILERLGP---KGRLIAIDRDPDAIAAAKDRLKP-F-----GRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHhCCC---CCEEEEEcCCHHHHHHHHHhhcc-C-----CcEEEEeCCHHHHHHHHHc
Confidence 3568889999999999999999998753 58999999999999999998765 2 5899999999988776544
Q ss_pred C-CcEEEEEEeCCC
Q 041272 171 S-TAVRLVAFNLGY 183 (267)
Q Consensus 171 ~-~~~d~ii~~~~~ 183 (267)
+ ..+|.|++|+|.
T Consensus 87 ~~~~vDgIl~DLGv 100 (296)
T PRK00050 87 GLGKVDGILLDLGV 100 (296)
T ss_pred CCCccCEEEECCCc
Confidence 1 269999999987
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.1e-12 Score=111.75 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=104.6
Q ss_pred HHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh
Q 041272 86 GVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME 165 (267)
Q Consensus 86 ~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~ 165 (267)
..+...++ |++|||+-|-||.++..+|.. | ..+|++||+|..+++.|++|++.|+. ...++.++++|...+.
T Consensus 210 ~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~g-G----A~~vt~VD~S~~al~~a~~N~~LNg~--~~~~~~~i~~Dvf~~l 281 (393)
T COG1092 210 RALGELAA-GKRVLNLFSYTGGFSVHAALG-G----ASEVTSVDLSKRALEWARENAELNGL--DGDRHRFIVGDVFKWL 281 (393)
T ss_pred HHHhhhcc-CCeEEEecccCcHHHHHHHhc-C----CCceEEEeccHHHHHHHHHHHHhcCC--CccceeeehhhHHHHH
Confidence 33444455 999999999999999999975 1 34999999999999999999999982 2356789998887665
Q ss_pred hc-CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCC
Q 041272 166 EI-VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPG 225 (267)
Q Consensus 166 ~~-~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 225 (267)
.. ...+.+||+|+.|+|..-...........++..++..+.++|+|||.++++.+..+..
T Consensus 282 ~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 282 RKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred HHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 53 3445589999999887666555544455677899999999999999999888765543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=104.59 Aligned_cols=107 Identities=19% Similarity=0.238 Sum_probs=85.0
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceE-EEecChhhhhhcCCCCCcE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVK-LFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~~~~~~ 174 (267)
..|||+|||||..-...--. |+..|+++|.++.|-+.|.+.++++. ..++. |+.++.+++.++ ++.++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~-----p~~svt~lDpn~~mee~~~ks~~E~k----~~~~~~fvva~ge~l~~l--~d~s~ 146 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK-----PINSVTCLDPNEKMEEIADKSAAEKK----PLQVERFVVADGENLPQL--ADGSY 146 (252)
T ss_pred cceEEecccCCCCcccccCC-----CCceEEEeCCcHHHHHHHHHHHhhcc----CcceEEEEeechhcCccc--ccCCe
Confidence 46899999999765443321 46899999999999999999998875 56666 787777777665 46789
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
|.|+..+ ++-..+++.+.|++..|+|+|||++++.....
T Consensus 147 DtVV~Tl---------vLCSve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 147 DTVVCTL---------VLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred eeEEEEE---------EEeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 9999985 33445677899999999999999999887643
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-12 Score=104.27 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=74.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh-----
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME----- 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~----- 165 (267)
.++++.+|||+|||+|.++..+++.... .++|+|+|+|+.+ . ..++++++.+..+..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~---~~~v~~vDis~~~---------~------~~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGG---KGRVIAVDLQPMK---------P------IENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCC---CceEEEEeccccc---------c------CCCceEEEeeCCChhHHHHH
Confidence 4678999999999999999999987643 4789999999865 1 134666665543321
Q ss_pred -hcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 -EIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 -~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
... ....||+|+++....-.......+ .......+++++.++|+|||++++..+
T Consensus 91 ~~~~-~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 91 RERV-GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHh-CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 112 234699999874210001001111 123357899999999999999998765
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=108.53 Aligned_cols=107 Identities=12% Similarity=0.103 Sum_probs=74.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++......++.+|+|+|+|++|++.|+++.... ++.+...+..++.. .+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~~~~~~~~~l~~---~~~ 128 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-------GVTFRQAVSDELVA---EGE 128 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-------CCeEEEEecccccc---cCC
Confidence 45679999999999999999875422112469999999999999999876542 34444433333322 345
Q ss_pred cEEEEEEeCCCCCCCCCceeechh--hHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSE--TTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+||+|+++. ++++.+ ...++++++.++++ |.+++.+.
T Consensus 129 ~fD~V~~~~---------~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 129 RFDVVTSNH---------FLHHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred CccEEEECC---------eeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 899999984 344333 24689999999988 55555554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=119.05 Aligned_cols=106 Identities=21% Similarity=0.169 Sum_probs=79.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++.. .+|+|+|++++|++.+++... ...++.+++.+..+.. ...++.
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~------~~v~giD~s~~~l~~a~~~~~------~~~~i~~~~~d~~~~~-~~~~~~ 102 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA------GQVIALDFIESVIKKNESING------HYKNVKFMCADVTSPD-LNISDG 102 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC------CEEEEEeCCHHHHHHHHHHhc------cCCceEEEEecccccc-cCCCCC
Confidence 356799999999999999999873 689999999999988765322 1357888876654321 122345
Q ss_pred cEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+||+|+++.. .++ .+...++++++.++|||||++++.+.
T Consensus 103 ~fD~I~~~~~---------l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 103 SVDLIFSNWL---------LMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CEEEEehhhh---------HHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 7999999842 222 23357899999999999999998764
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.3e-12 Score=104.79 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=77.5
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..++.. +.+|+|+|+|++|++.|++++...+ ...++.+...+..++.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~------~~~v~gvD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~------ 117 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR------GAIVKAVDISEQMVQMARNRAQGRD---VAGNVEFEVNDLLSLC------ 117 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChhhCC------
Confidence 346789999999999999999976 3689999999999999999987755 2347888876654432
Q ss_pred CcEEEEEEeCCCCCCCCCceeec-hhhHHHHHHHHHhcccCCcEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT-SETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
.+||+|++... +.+. .+....+++++.+++++++++.+
T Consensus 118 ~~fD~ii~~~~--------l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 GEFDIVVCMDV--------LIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred CCcCEEEEhhH--------HHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 36999987621 1221 24567889999999887666543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=99.94 Aligned_cols=107 Identities=16% Similarity=0.088 Sum_probs=80.0
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.+++.++.+. ..+|+++|+++.+++.+++|++.++ ..+++++++|....... ...
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-----a~~V~~vE~~~~a~~~a~~Nl~~~~----~~~v~~~~~D~~~~l~~--~~~ 120 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-----AAGATLLEMDRAVAQQLIKNLATLK----AGNARVVNTNALSFLAQ--PGT 120 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEEchHHHHHhh--cCC
Confidence 457899999999999998755442 3699999999999999999999887 45789988776543321 123
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHh--cccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAER--ILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~ 220 (267)
.||+|++|+||.... ..++++.+.+ +|+|+|++++...
T Consensus 121 ~fDlV~~DPPy~~g~----------~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 121 PHNVVFVDPPFRKGL----------LEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CceEEEECCCCCCCh----------HHHHHHHHHHCCCcCCCcEEEEEec
Confidence 699999998863321 2344555544 4799999988765
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.1e-12 Score=104.28 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=77.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc--------ccccccceEEEecChh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT--------SKAEKGLVKLFNMCHS 162 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~--------~~~~~~~v~~~~~~~~ 162 (267)
.+.++.+|||+|||.|..++.||++ +.+|+|||+|+.+++.+.+...... ......++++.++|..
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECccc
Confidence 3456789999999999999999987 5799999999999998743211100 0001356777776655
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
++.... ...||.|+-...+ ....++...++++.+.++|||||++++.+
T Consensus 108 ~l~~~~--~~~fd~v~D~~~~-------~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 108 ALTAAD--LADVDAVYDRAAL-------IALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CCCccc--CCCeeEEEehHhH-------hhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 443211 1367888754211 11134567899999999999999755543
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=104.16 Aligned_cols=107 Identities=16% Similarity=0.229 Sum_probs=82.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|++++...+ .+++++..+..++... ..
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~--~~ 112 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL------GADVTGIDASEENIEVARLHALESG-----LKIDYRQTTAEELAAE--HP 112 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEcCCHHHHHHHHHHHHHcC-----CceEEEecCHHHhhhh--cC
Confidence 346789999999999999999876 3689999999999999999887654 2566766555544322 23
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|++.. +..+..+...+++++.+.|+|||++++..+
T Consensus 113 ~~fD~Ii~~~---------~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 113 GQFDVVTCME---------MLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred CCccEEEEhh---------HhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 4799998862 333444567899999999999999988765
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.3e-12 Score=104.60 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=82.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+ ..++.+...+..++.... ..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~~--~~~ 112 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL------GANVTGIDASEENIEVAKLHAKKDP----LLKIEYRCTSVEDLAEKG--AKS 112 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhcCC--CCC
Confidence 4779999999999999998875 3579999999999999999988755 235777776654443211 247
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|+++ ...++..+...+++++.+.|+|||.+++...
T Consensus 113 ~D~i~~~---------~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 113 FDVVTCM---------EVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ccEEEeh---------hHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999887 2344455667899999999999999988764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=102.40 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=94.6
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
..+||||||.|.+...+|+.. |...++|||+....+..|.+.+.+.+ ..|+.+++.|+..+...+.+++++|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n----P~~nfiGiEi~~~~v~~~l~k~~~~~----l~Nlri~~~DA~~~l~~~~~~~sl~ 121 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN----PEKNFLGIEIRVPGVAKALKKIKELG----LKNLRLLCGDAVEVLDYLIPDGSLD 121 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC----CCCCEEEEEEehHHHHHHHHHHHHcC----CCcEEEEcCCHHHHHHhcCCCCCee
Confidence 589999999999999999995 46899999999999999999999987 4499999999999999888888999
Q ss_pred EEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 176 LVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
-|..+++- |.+... ++ ..=....+++.+.+.|||||.+.+.+-
T Consensus 122 ~I~i~FPD-PWpKkR-H~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 122 KIYINFPD-PWPKKR-HHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred EEEEECCC-CCCCcc-ccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 99999754 222111 11 111236899999999999999988664
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.9e-12 Score=100.13 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=75.7
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE 166 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 166 (267)
++...+++|.+|||+|||.|.+...|.+.. +.+.+|||++++.+..|.+ .-+.++++|..+-..
T Consensus 6 ~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k-----~v~g~GvEid~~~v~~cv~-----------rGv~Viq~Dld~gL~ 69 (193)
T PF07021_consen 6 IIAEWIEPGSRVLDLGCGDGELLAYLKDEK-----QVDGYGVEIDPDNVAACVA-----------RGVSVIQGDLDEGLA 69 (193)
T ss_pred HHHHHcCCCCEEEecCCCchHHHHHHHHhc-----CCeEEEEecCHHHHHHHHH-----------cCCCEEECCHHHhHh
Confidence 344568899999999999999999999863 4799999999999888865 346678877765443
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhc
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~ 208 (267)
.. ++.+||.||.+ ..+.....+.++|+++.|+
T Consensus 70 ~f-~d~sFD~VIls---------qtLQ~~~~P~~vL~EmlRV 101 (193)
T PF07021_consen 70 DF-PDQSFDYVILS---------QTLQAVRRPDEVLEEMLRV 101 (193)
T ss_pred hC-CCCCccEEehH---------hHHHhHhHHHHHHHHHHHh
Confidence 33 35589999998 5666677788999998776
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.1e-12 Score=112.82 Aligned_cols=145 Identities=12% Similarity=0.098 Sum_probs=109.2
Q ss_pred eecccceeeeecCCCccccchhhhccCCeeEEEecCCcccccccccccccccccccCCCCCCCCCCcchhHHHHhhHHHh
Q 041272 10 RCWSRSLSFAIPRNTLLPFPAAALSKANVNVLRFSSSCCSAASFQQKQSCSTNNCTPLPLCKDSPLSGTLITIAANGVWK 89 (267)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~ 89 (267)
++--..|+|+|+++.||| .|+.+. ..++..+.++.
T Consensus 345 ~E~l~~ltF~iSp~AFFQ-----------------------~Nt~~a---------------------evLys~i~e~~- 379 (534)
T KOG2187|consen 345 TESLLGLTFRISPGAFFQ-----------------------TNTSAA---------------------EVLYSTIGEWA- 379 (534)
T ss_pred EeecCCeEEEECCchhhc-----------------------cCcHHH---------------------HHHHHHHHHHh-
Confidence 344678999999999999 776655 55566666654
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
.++.+..+||+.||||.+++.+|+.+ .+|+||++++++++.|++|++.|+ ..|++|+++.++++...+.
T Consensus 380 -~l~~~k~llDv~CGTG~iglala~~~------~~ViGvEi~~~aV~dA~~nA~~Ng----isNa~Fi~gqaE~~~~sl~ 448 (534)
T KOG2187|consen 380 -GLPADKTLLDVCCGTGTIGLALARGV------KRVIGVEISPDAVEDAEKNAQING----ISNATFIVGQAEDLFPSLL 448 (534)
T ss_pred -CCCCCcEEEEEeecCCceehhhhccc------cceeeeecChhhcchhhhcchhcC----ccceeeeecchhhccchhc
Confidence 56778899999999999999999985 689999999999999999999999 7999999997777655332
Q ss_pred CC--CcEE-EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 170 KS--TAVR-LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 170 ~~--~~~d-~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.. ..-+ +++.|++- . . -...+++.+.+.-++--.++++|.+
T Consensus 449 ~~~~~~~~~v~iiDPpR---~--G------lh~~~ik~l~~~~~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 449 TPCCDSETLVAIIDPPR---K--G------LHMKVIKALRAYKNPRRLVYVSCNP 492 (534)
T ss_pred ccCCCCCceEEEECCCc---c--c------ccHHHHHHHHhccCccceEEEEcCH
Confidence 21 1223 55666321 0 0 1146777777775688888888874
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=105.05 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=79.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..+.+|||+|||+|.++..++++.+ +.+|+|+|+++.|++.|++++ .++++++.|..++. . +.
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~----~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~---~-~~ 125 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCK----PEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFE---S-NE 125 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhc---c-cC
Confidence 3457999999999999999988743 369999999999999998863 35677776654432 2 34
Q ss_pred cEEEEEEeCCCCCCCCCceeec--h-------hh--HHHHHHHHHhcccCCcEEEEEEecC
Q 041272 173 AVRLVAFNLGYLPGGDKSVITT--S-------ET--TKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~--~-------~~--~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.||+|++|+++.+......... . +. ..++++....+|+|+|.+.+. +.+
T Consensus 126 kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss 185 (279)
T PHA03411 126 KFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSG 185 (279)
T ss_pred CCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eec
Confidence 7999999998865322111110 1 11 257788889999999966554 543
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=101.75 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=76.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||+|||+|.++..+++++.. -+..+|+++|+++.+++.|+++.. ++.+++.|..+. .. +..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~-~~~~~V~aVEID~~Al~~Ar~n~~---------~~~~~~~D~~~~---~~-~~~ 114 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMY-AKPREIVCVELNHTYYKLGKRIVP---------EATWINADALTT---EF-DTL 114 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhccc-CCCcEEEEEECCHHHHHHHHhhcc---------CCEEEEcchhcc---cc-cCC
Confidence 3679999999999999999986431 014689999999999999998642 356666554322 11 347
Q ss_pred EEEEEEeCCCCCCCCCce---eechhhHHHHHHHHHhcccCCcE
Q 041272 174 VRLVAFNLGYLPGGDKSV---ITTSETTKMALEAAERILIPGGL 214 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~---~~~~~~~~~~l~~~~~~LkpgG~ 214 (267)
||+|++|+||.+...... .........+++.+.+++++|+.
T Consensus 115 FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 115 FDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999999999976542211 11224456789999997777775
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.6e-11 Score=103.19 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=83.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccc-cccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA-EKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+...+||+||||+|..+..++++.+ ..+|++||+++++++.|++.+...+... ...+++++.+|....... ..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~----~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~ 148 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS----VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TE 148 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC----CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CC
Confidence 3567999999999999999987633 3689999999999999999886532110 146889998887655433 23
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..||+|++++.. |... ...-...++++.+.+.|+|||++++..
T Consensus 149 ~~yDvIi~D~~d-p~~~----~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 149 NSFDVIIVDSTD-PVGP----AEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CcccEEEECCCC-CCCc----hhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 479999998521 1100 001123688999999999999997653
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-11 Score=95.85 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=76.8
Q ss_pred cCCCC-EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 92 VRKGD-TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 92 l~~~~-~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
+.+.. +|||+|||+|.+...|++.-= ..+++|+|.|+.+++.|+..+++.+ ....|+|.+.|.. +....
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf----~~~L~GvDYs~~AV~LA~niAe~~~---~~n~I~f~q~DI~---~~~~~ 133 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEGF----QSKLTGVDYSEKAVELAQNIAERDG---FSNEIRFQQLDIT---DPDFL 133 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhcC----CCCccccccCHHHHHHHHHHHHhcC---CCcceeEEEeecc---CCccc
Confidence 34444 999999999999999998631 2469999999999999999888887 3344888775443 22222
Q ss_pred CCcEEEEEEe----C-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFN----L-GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~----~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+||+|.-- . ...|.. .......++..+.++|+|||+++|..+
T Consensus 134 ~~qfdlvlDKGT~DAisLs~d~------~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 134 SGQFDLVLDKGTLDAISLSPDG------PVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred ccceeEEeecCceeeeecCCCC------cccceeeehhhHhhccCCCcEEEEEec
Confidence 3467776421 0 000110 011124678888999999999999876
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.5e-11 Score=95.24 Aligned_cols=111 Identities=16% Similarity=0.140 Sum_probs=79.2
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
..-|||||||+|..+..+... +-..+|+|+|+.|++.|.+.--+ -.++..|.. ...+...+.|
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~------Gh~wiGvDiSpsML~~a~~~e~e---------gdlil~DMG--~GlpfrpGtF 113 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS------GHQWIGVDISPSMLEQAVERELE---------GDLILCDMG--EGLPFRPGTF 113 (270)
T ss_pred CcEEEEeccCCCcchheeccC------CceEEeecCCHHHHHHHHHhhhh---------cCeeeeecC--CCCCCCCCcc
Confidence 568999999999999888865 46789999999999999973221 134443443 2234455688
Q ss_pred EEEEEe--CCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 175 RLVAFN--LGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 175 d~ii~~--~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
|.+|+- +.++=.++.+.++.......++..++.+|++|++.++..++.
T Consensus 114 Dg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 114 DGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred ceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 877544 344444444444444556788999999999999999988853
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-11 Score=102.00 Aligned_cols=107 Identities=10% Similarity=0.136 Sum_probs=88.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-CC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-PK-- 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~~-- 170 (267)
+..+|||||+++|+.++.+|+.+++ +++|+++|.+++..+.|++++++.| ...+|+++.++..+....+ ..
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~---~g~v~tiE~~~~~~~~Ar~~~~~ag---~~~~I~~~~G~a~e~L~~l~~~~~ 152 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPE---DGKILAMDINRENYELGLPVIQKAG---VAHKIDFREGPALPVLDQMIEDGK 152 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHCC---CCCceEEEeccHHHHHHHHHhccc
Confidence 4569999999999999999998765 6899999999999999999999988 5789999998887654432 21
Q ss_pred -CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 171 -STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 171 -~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
..+||+|+.+. ....+..+++.+.++|+|||++++-
T Consensus 153 ~~~~fD~iFiDa------------dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 153 YHGTFDFIFVDA------------DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cCCcccEEEecC------------CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 24799999983 2455678899999999999998763
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-11 Score=85.76 Aligned_cols=102 Identities=22% Similarity=0.302 Sum_probs=78.0
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEE
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL 176 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ 176 (267)
+|+|+|||+|..+..+++. + ..+++++|+++.+++.+++...... ..++.++..+..+... ....++|+
T Consensus 1 ~ildig~G~G~~~~~~~~~-~----~~~~~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~d~ 69 (107)
T cd02440 1 RVLDLGCGTGALALALASG-P----GARVTGVDISPVALELARKAAAALL----ADNVEVLKGDAEELPP--EADESFDV 69 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-C----CCEEEEEeCCHHHHHHHHHHHhccc----ccceEEEEcChhhhcc--ccCCceEE
Confidence 5899999999999999872 2 4799999999999999986443333 4677888766655433 12347999
Q ss_pred EEEeCCCCCCCCCceeec-hhhHHHHHHHHHhcccCCcEEEEE
Q 041272 177 VAFNLGYLPGGDKSVITT-SETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 177 ii~~~~~lp~~d~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
++.+.. .+. ......+++.+.+.|+|||.+++.
T Consensus 70 i~~~~~---------~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 70 IISDPP---------LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEccc---------eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 999842 333 566789999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=106.15 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=76.0
Q ss_pred CCCEEEEecCCCCh----HHHHHHHhcCCC-CCCcEEEEEeCChHHHHHHHHHHhhc----cc-----------------
Q 041272 94 KGDTVVDATCGNGY----DTLMMLKMVADE-SSAGCVYGLDIQSEALKSTSSLLDKT----TS----------------- 147 (267)
Q Consensus 94 ~~~~VLDlGcG~G~----~~~~la~~~~~~-~p~~~v~giD~s~~~i~~a~~~~~~~----~~----------------- 147 (267)
++.+|+|+|||||. ++..+++..+.. .++.+|+|+|+|+.|++.|++..-.. +.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 556666654310 01468999999999999999864210 00
Q ss_pred --cccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEE
Q 041272 148 --KAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 148 --~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
+....+|.|.+.+. .+...+..+||+|++.. +++ ..+...++++++++.|+|||++++.
T Consensus 179 v~~~ir~~V~F~~~dl---~~~~~~~~~fD~I~crn---------vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNL---LAESPPLGDFDLIFCRN---------VLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccC---CCCCCccCCCCEEEech---------hHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 00123567766444 33333345799998852 222 2356679999999999999999874
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-11 Score=102.63 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=87.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..|.+|||+-|-||.+++.++.. | ..+|++||.|..+++.|++|+..|+. ...+++++..|..+.........
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-G----A~~v~~VD~S~~al~~a~~N~~lNg~--~~~~~~~~~~Dvf~~l~~~~~~~ 194 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-G----AKEVVSVDSSKRALEWAKENAALNGL--DLDRHRFIQGDVFKFLKRLKKGG 194 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-T----ESEEEEEES-HHHHHHHHHHHHHTT---CCTCEEEEES-HHHHHHHHHHTT
T ss_pred cCCCceEEecCCCCHHHHHHHHC-C----CCEEEEEeCCHHHHHHHHHHHHHcCC--CccceEEEecCHHHHHHHHhcCC
Confidence 45889999999999999988764 2 35899999999999999999999882 13678999888776444333345
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
.||+||.|+|.+.... .....++.+++..+.++|+|||.+++.++..+
T Consensus 195 ~fD~IIlDPPsF~k~~---~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 195 RFDLIILDPPSFAKSK---FDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp -EEEEEE--SSEESST---CEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred CCCEEEECCCCCCCCH---HHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 8999999987754332 22345678899999999999999977666443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-11 Score=95.28 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=73.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..++++ +.+|+++|+++.+++.+++++.. ..+++++++|..++ ..+
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~------~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~---~~~ 74 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER------AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKF---DLP 74 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhc------CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcC---Ccc
Confidence 3567889999999999999999987 36899999999999999998854 25788888666544 223
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhc--ccCCcEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI--LIPGGLISMV 218 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~--LkpgG~l~i~ 218 (267)
+..+|.+++|++|-. ....+..+.+. +.++|.+++.
T Consensus 75 ~~~~d~vi~n~Py~~------------~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 75 KLQPYKVVGNLPYNI------------STPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ccCCCEEEECCCccc------------HHHHHHHHHhcCCCcceEEEEEE
Confidence 336899999976611 12344444432 3477777654
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=101.06 Aligned_cols=117 Identities=22% Similarity=0.269 Sum_probs=88.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-ChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~ 169 (267)
.+++|..|||--||||.+...+.-. +++++|.|++..|++-|+.|++..+ .....+... |+.++. +
T Consensus 194 ~v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~Nl~~y~----i~~~~~~~~~Da~~lp--l- 260 (347)
T COG1041 194 RVKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKINLEYYG----IEDYPVLKVLDATNLP--L- 260 (347)
T ss_pred ccccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhhhhhhhC----cCceeEEEecccccCC--C-
Confidence 5789999999999999999998865 6899999999999999999999876 344545444 554444 3
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
++..+|.|+.+++|=............-..++++.+.++||+||++++..+
T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 333799999999883222111111124468999999999999999988765
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-10 Score=100.70 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=68.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-cccccccceEEE-ecChhhhhhcC-CC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-TSKAEKGLVKLF-NMCHSRMEEIV-PK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~-~~~~~~l~~~~-~~ 170 (267)
++.+|||||||+|.+...++.+.. +.+++|+|+++.+++.|++|++.+ + +..+++++ +.+..++.... ..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~----~~~~~atDId~~Al~~A~~Nv~~Np~---l~~~I~~~~~~~~~~i~~~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY----GWRFVGSDIDPQALASAQAIISANPG---LNGAIRLRLQKDSKAIFKGIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC----CCEEEEEeCCHHHHHHHHHHHHhccC---CcCcEEEEEccchhhhhhccccc
Confidence 457999999999988888887643 589999999999999999999998 6 45678775 34444544422 23
Q ss_pred CCcEEEEEEeCCCCCCCCC
Q 041272 171 STAVRLVAFNLGYLPGGDK 189 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~ 189 (267)
...||+|++|+||......
T Consensus 187 ~~~fDlivcNPPf~~s~~e 205 (321)
T PRK11727 187 NERFDATLCNPPFHASAAE 205 (321)
T ss_pred CCceEEEEeCCCCcCcchh
Confidence 4589999999999776543
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-10 Score=103.30 Aligned_cols=138 Identities=15% Similarity=0.191 Sum_probs=100.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..++|++|||+++|+|.-|..+|..++. .+.|+++|+++..++..++|+++.| ..++.+...|...+....+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~---~g~lvA~D~~~~R~~~L~~nl~r~G----~~nv~v~~~D~~~~~~~~~- 181 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNN---QGAIVANEYSASRVKVLHANISRCG----VSNVALTHFDGRVFGAALP- 181 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCchhhhhhhch-
Confidence 4578999999999999999999999865 5799999999999999999999988 5778888777666544333
Q ss_pred CCcEEEEEEeCCC-----CCCCCCceee--------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHH-HHH
Q 041272 171 STAVRLVAFNLGY-----LPGGDKSVIT--------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAV-EAF 236 (267)
Q Consensus 171 ~~~~d~ii~~~~~-----lp~~d~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~ 236 (267)
..||.|+.|.+. +......... ......++|..+.+.|||||+|+.+++ ....+|.+.+ ..+
T Consensus 182 -~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC---T~~~eENE~vV~~~ 257 (470)
T PRK11933 182 -ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC---TLNREENQAVCLWL 257 (470)
T ss_pred -hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC---CCCHHHHHHHHHHH
Confidence 359999999654 1111101111 123347899999999999999966655 3344555544 444
Q ss_pred HHhC
Q 041272 237 ARSL 240 (267)
Q Consensus 237 ~~~l 240 (267)
++..
T Consensus 258 L~~~ 261 (470)
T PRK11933 258 KETY 261 (470)
T ss_pred HHHC
Confidence 4543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-10 Score=88.81 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=62.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
-.|.+|+|+|||||.+++..+-. | ..+|+|+|+++++++.+++|+.+. ..+++|+..|..++. .
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~l-G----a~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~~------~ 107 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALL-G----ASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDFR------G 107 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhc-C----CcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhcC------C
Confidence 36779999999999999998864 3 379999999999999999999984 478999986665443 3
Q ss_pred cEEEEEEeCCC
Q 041272 173 AVRLVAFNLGY 183 (267)
Q Consensus 173 ~~d~ii~~~~~ 183 (267)
.+|.++.|+|+
T Consensus 108 ~~dtvimNPPF 118 (198)
T COG2263 108 KFDTVIMNPPF 118 (198)
T ss_pred ccceEEECCCC
Confidence 68899999765
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.8e-11 Score=98.75 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=73.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+ ...++.+..++.. . .+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~------~~~v~~~D~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~---~---~~ 125 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR------GAKVVASDISPQMVEEARERAPEAG---LAGNITFEVGDLE---S---LL 125 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcC---CccCcEEEEcCch---h---cc
Confidence 456789999999999999999976 3579999999999999999987765 2257888775522 1 13
Q ss_pred CcEEEEEEeCCCCCCCCCcee-e-chhhHHHHHHHHHhcccCCcEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVI-T-TSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~-~-~~~~~~~~l~~~~~~LkpgG~l 215 (267)
..||+|++.. +. + ..+....+++++.+.+++++++
T Consensus 126 ~~fD~v~~~~---------~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 126 GRFDTVVCLD---------VLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred CCcCEEEEcc---------hhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 4699998762 22 2 2345567888888876544443
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.6e-11 Score=100.95 Aligned_cols=135 Identities=20% Similarity=0.208 Sum_probs=93.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.|.+|||||||+|+++..++.+- ...|+|||.++....+.+.-.+-.+ ...++..+....+++.. ...
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G-----A~~ViGiDP~~lf~~QF~~i~~~lg---~~~~~~~lplgvE~Lp~----~~~ 182 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG-----AKSVIGIDPSPLFYLQFEAIKHFLG---QDPPVFELPLGVEDLPN----LGA 182 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC-----CCEEEEECCChHHHHHHHHHHHHhC---CCccEEEcCcchhhccc----cCC
Confidence 58899999999999999999872 3689999999987776544333322 11233333233444443 347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC--CCC----------------ChhhHHHHHH
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG--HPG----------------GREELEAVEA 235 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~----------------~~~~~~~~~~ 235 (267)
||+|++- .++.|..++...|+++.+.|+|||.+++-+..- ... -......+..
T Consensus 183 FDtVF~M---------GVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~ 253 (315)
T PF08003_consen 183 FDTVFSM---------GVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKN 253 (315)
T ss_pred cCEEEEe---------eehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHH
Confidence 9999887 688888899999999999999999999755321 110 0013456788
Q ss_pred HHHhCCCCceEEEE
Q 041272 236 FARSLSVDDWICCK 249 (267)
Q Consensus 236 ~~~~l~~~~~~~~~ 249 (267)
|++.......+++.
T Consensus 254 wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 254 WLERAGFKDVRCVD 267 (315)
T ss_pred HHHHcCCceEEEec
Confidence 88876665555544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-11 Score=95.13 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=90.3
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-----c-ccc
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS-----K-AEK 151 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~-----~-~~~ 151 (267)
..+...+...+...+.||.+.||+|+|+|+++..++..++. ++..++|||.-++.|+.+++|+...-. . ...
T Consensus 66 p~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~--~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 66 PHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGA--TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred hHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcC--CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 34445555666667899999999999999999999998876 345569999999999999999976421 0 113
Q ss_pred cceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 152 ~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.++.++.+|. .....+..+||.|...... .+..+++...|+|||++++-..
T Consensus 144 ~~l~ivvGDg---r~g~~e~a~YDaIhvGAaa---------------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 144 GELSIVVGDG---RKGYAEQAPYDAIHVGAAA---------------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CceEEEeCCc---cccCCccCCcceEEEccCc---------------cccHHHHHHhhccCCeEEEeec
Confidence 4556665444 4444555678888776322 4677888999999999977543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=96.96 Aligned_cols=118 Identities=12% Similarity=0.104 Sum_probs=81.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc------cc--cccccceEEEecChh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT------TS--KAEKGLVKLFNMCHS 162 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~------~~--~~~~~~v~~~~~~~~ 162 (267)
.+.++.+||+.|||.|..+..||+. +.+|+|+|+|+.+|+.+.+..... +. .....+++++++|..
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f 113 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIF 113 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCc
Confidence 3456789999999999999999997 578999999999999986632110 00 001346788887766
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
++.........||+|+-...+ +...++...++.+.+.++|+|||.+++..+.
T Consensus 114 ~l~~~~~~~~~fD~VyDra~~-------~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 114 NLPKIANNLPVFDIWYDRGAY-------IALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CCCccccccCCcCeeeeehhH-------hcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 653211112367876544211 1113456689999999999999999887764
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-10 Score=92.31 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=78.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-CCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-PKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~~~~ 172 (267)
++.+|||++||+|.+++.++.+. ..+|++||.++.+++.+++|++.++ ...+++++.+|..+..... ....
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-----a~~v~~vE~~~~a~~~~~~N~~~~~---~~~~~~~~~~D~~~~l~~~~~~~~ 120 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-----AKVAFLEEDDRKANQTLKENLALLK---SGEQAEVVRNSALRALKFLAKKPT 120 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHHhC---CcccEEEEehhHHHHHHHhhccCC
Confidence 57899999999999999999873 3589999999999999999999887 3357889988875543322 2222
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHH--HhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAA--ERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~ 219 (267)
.+|+|+.+++|-.. .....++.+ ..+|+++|++++..
T Consensus 121 ~~dvv~~DPPy~~~----------~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 121 FDNVIYLDPPFFNG----------ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CceEEEECcCCCCC----------cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 47999999877321 112344433 34788999876643
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-11 Score=96.72 Aligned_cols=94 Identities=15% Similarity=0.238 Sum_probs=68.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh-hhhcCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR-MEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~ 169 (267)
.++++++|||+|||+|.++..+++.. +..++|+|+++++++.|++ .++++++++..+ +.. .
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~-----~~~~~giD~s~~~i~~a~~-----------~~~~~~~~d~~~~l~~--~ 71 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEK-----QVRGYGIEIDQDGVLACVA-----------RGVNVIQGDLDEGLEA--F 71 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhcc-----CCcEEEEeCCHHHHHHHHH-----------cCCeEEEEEhhhcccc--c
Confidence 35678899999999999999988763 3578999999999998864 134566555433 211 2
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccC
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkp 211 (267)
++.+||+|+++ ..+++.+++.++++++.+.+++
T Consensus 72 ~~~sfD~Vi~~---------~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 72 PDKSFDYVILS---------QTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCCCcCEEEEh---------hHhHcCcCHHHHHHHHHHhCCe
Confidence 34579999998 3445556678899999887664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-10 Score=100.40 Aligned_cols=104 Identities=18% Similarity=0.149 Sum_probs=69.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-ccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-AEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++++..... ....++.+...+..++ +.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------~~ 211 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------SG 211 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc------CC
Confidence 5789999999999999999986 469999999999999999998764200 0023567766554322 24
Q ss_pred cEEEEEEeCCCCCCCCCceeechh-hHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSE-TTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.||+|++.. .++|.+. ....+++.+.+ +.+||++ +.+
T Consensus 212 ~fD~Vv~~~--------vL~H~p~~~~~~ll~~l~~-l~~g~li-Is~ 249 (315)
T PLN02585 212 KYDTVTCLD--------VLIHYPQDKADGMIAHLAS-LAEKRLI-ISF 249 (315)
T ss_pred CcCEEEEcC--------EEEecCHHHHHHHHHHHHh-hcCCEEE-EEe
Confidence 689988762 1223222 23456666665 4566554 443
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.8e-11 Score=96.32 Aligned_cols=128 Identities=21% Similarity=0.191 Sum_probs=83.7
Q ss_pred cccCCCCCCCCCCcchhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHH
Q 041272 63 NCTPLPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142 (267)
Q Consensus 63 ~~~~~~~~~d~~~~~~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~ 142 (267)
.|........+.++.....+- ..+. ..+++|.+|+|+.||.|.+++.+|+..+ ...|+++|++|.+++..++|+
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er-~Ri~-~~v~~~e~VlD~faGIG~f~l~~ak~~~----~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTER-RRIA-NLVKPGEVVLDMFAGIGPFSLPIAKHGK----AKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp TEEEEEETTTS---GGGHHHH-HHHH-TC--TT-EEEETT-TTTTTHHHHHHHT-----SSEEEEEES-HHHHHHHHHHH
T ss_pred CEEEEEccceEEEccccHHHH-HHHH-hcCCcceEEEEccCCccHHHHHHhhhcC----ccEEEEecCCHHHHHHHHHHH
Confidence 344444444555543333332 2222 3478899999999999999999998532 478999999999999999999
Q ss_pred hhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 143 ~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
+.|+ ...++..+++|..++.. ...+|.++++++. ....++..+.+++++||++.
T Consensus 146 ~lNk---v~~~i~~~~~D~~~~~~----~~~~drvim~lp~-------------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 146 RLNK---VENRIEVINGDAREFLP----EGKFDRVIMNLPE-------------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHTT----TTTEEEEES-GGG-------TT-EEEEEE--TS-------------SGGGGHHHHHHHEEEEEEEE
T ss_pred HHcC---CCCeEEEEcCCHHHhcC----ccccCEEEECChH-------------HHHHHHHHHHHHhcCCcEEE
Confidence 9998 56778889888766554 4579999999532 22368899999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.7e-10 Score=96.84 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=83.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+...+||+||||.|..+..++++-+ ..+|+.+|+++.+++.|++.+...+......+++++.+|......... +.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~----v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-~~ 164 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSS----VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-EG 164 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC----CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-CC
Confidence 4567999999999999999998632 368999999999999999988653211124689999887755433221 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.||+|+.+... |.. ....-...++++.+.++|+|||+++..
T Consensus 165 ~yDvIi~D~~d-p~~----~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 165 TYDAIIVDSSD-PVG----PAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCCEEEEcCCC-CCC----chhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 79999998422 110 000112368999999999999999764
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-09 Score=93.90 Aligned_cols=115 Identities=14% Similarity=0.058 Sum_probs=80.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
...+||+||||+|..+..+++..+ ..+|+++|+++++++.|++++...+......+++++.+|........ ...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~----~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~ 145 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS----VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENT 145 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC----cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCC
Confidence 445999999999999998887642 36899999999999999998765321112357788776654433222 347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
||+|+.+......... .-...++++.+.++|+|||++++..
T Consensus 146 yDvIi~D~~~~~~~~~-----~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAE-----TLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred ccEEEEeCCCCCCccc-----chhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9999998532111000 0113688999999999999998763
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-10 Score=100.15 Aligned_cols=117 Identities=19% Similarity=0.278 Sum_probs=77.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc------ccccceEEEecChh--hhh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK------AEKGLVKLFNMCHS--RME 165 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~------~~~~~v~~~~~~~~--~l~ 165 (267)
++.+|||+|||.|....-+... + -..++|+|++.+.|+.|+++.+..... ...-...++..|.. .+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~----i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-K----IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-----SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEecCCCchhHHHHHhc-C----CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 7889999999999888777764 2 379999999999999999999432110 00123445554433 334
Q ss_pred hcCCCC-CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EIVPKS-TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~-~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+.+. ..||+|-+-+.. +......+..+.+|+++.+.|+|||+++.+++
T Consensus 137 ~~~~~~~~~FDvVScQFal-----HY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFAL-----HYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp CTSSSTTS-EEEEEEES-G-----GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhccccCCCcceeehHHHH-----HHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 434333 689999877421 01122345667899999999999999999887
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=95.87 Aligned_cols=117 Identities=11% Similarity=0.043 Sum_probs=80.9
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHH--Hhhccc-cccccceEEEecChhhhhhcCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSL--LDKTTS-KAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~--~~~~~~-~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
....+||++|||+|..+..+++..+ ..+|++||+++++++.|++. +...+. ....++++++.+|..+.....
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~----v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~- 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET----VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP- 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC----CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-
Confidence 3456999999999999888887632 37999999999999999962 111100 012478999888876654332
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...||+|+.+++. +... ....-...++++.+.+.|+|||++++..
T Consensus 224 -~~~YDVIIvDl~D---P~~~-~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 224 -SSLYDVIIIDFPD---PATE-LLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred -CCCccEEEEcCCC---cccc-chhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 3479999999532 1100 0111223689999999999999987653
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.1e-10 Score=92.14 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=79.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh-ccc-------cccccceEEEecChh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK-TTS-------KAEKGLVKLFNMCHS 162 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~-~~~-------~~~~~~v~~~~~~~~ 162 (267)
..+++.+||..|||.|.....||++ +.+|+|+|+|+.+++.|.+.... ... .....+|+++++|..
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF 107 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFF 107 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TT
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccc
Confidence 4667789999999999999999997 57999999999999998443221 000 011346788887776
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
++.... .+.||+|+-...+ +...++...++.+.+.++|+|||.+++.+
T Consensus 108 ~l~~~~--~g~fD~iyDr~~l-------~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 108 ELPPED--VGKFDLIYDRTFL-------CALPPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp TGGGSC--HHSEEEEEECSST-------TTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred cCChhh--cCCceEEEEeccc-------ccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 654322 1369999866322 11135667899999999999999944443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.8e-10 Score=103.76 Aligned_cols=140 Identities=12% Similarity=0.035 Sum_probs=91.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHH--hhccc-cccccceEEEecChhhhhhcCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL--DKTTS-KAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~--~~~~~-~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
++..+|||+|||+|..+..++++-+ ..+|+++|+++++++.|+++. ...+. ....++++++.+|..+.....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~----v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~- 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD----VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL- 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC----cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-
Confidence 4567999999999999999987521 269999999999999999943 22110 011368899988876654332
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (267)
..+||+|+.|++...... ...-...++++.+.+.|||||++++....... ..+......+.+.+.+|.
T Consensus 371 -~~~fDvIi~D~~~~~~~~----~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~----~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 371 -AEKFDVIIVDLPDPSNPA----LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF----APKAFWSIEATLEAAGLA 438 (521)
T ss_pred -CCCCCEEEEeCCCCCCcc----hhccchHHHHHHHHHhcCCCeEEEEecCCccc----chHHHHHHHHHHHHcCCE
Confidence 247999999953311000 00111357899999999999999876532111 123334455555555563
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-10 Score=96.63 Aligned_cols=124 Identities=19% Similarity=0.325 Sum_probs=85.6
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccc--ccceEEEecChh--
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE--KGLVKLFNMCHS-- 162 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~--~~~v~~~~~~~~-- 162 (267)
++....++++.++|+|||.|...+..-+. + -..++|+||.+..|++|+++.+.+..+.- .-.+.|+.+|..
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kA-g----I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKA-G----IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhh-c----ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 34455678999999999999998877754 2 36899999999999999999987531100 112456655443
Q ss_pred hhhhcCCCCCc-EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 163 RMEEIVPKSTA-VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~-~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+.+.+..+.+ ||+|-+-+.. +......+....+++++.+.|||||+++-+.+
T Consensus 185 ~l~d~~e~~dp~fDivScQF~~-----HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 185 RLMDLLEFKDPRFDIVSCQFAF-----HYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred HHHHhccCCCCCcceeeeeeeE-----eeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 44444433333 9988766411 01222456678899999999999999977665
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-09 Score=94.23 Aligned_cols=141 Identities=21% Similarity=0.283 Sum_probs=101.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..++|.+|||+.++.|.-|..+|+.+.. .+..|+++|+++.-++..++|+++.| ..++..+..|...+......
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~--~~~iV~A~D~~~~Rl~~l~~nl~RlG----~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMEN--EGAIVVAVDVSPKRLKRLRENLKRLG----VRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCC--CCceEEEEcCCHHHHHHHHHHHHHcC----CCceEEEecccccccccccc
Confidence 4578999999999999999999998753 24567999999999999999999998 56777777666555554444
Q ss_pred CCcEEEEEEeCCC-----CCCCCCceee--------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhH-HHHHHH
Q 041272 171 STAVRLVAFNLGY-----LPGGDKSVIT--------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREEL-EAVEAF 236 (267)
Q Consensus 171 ~~~~d~ii~~~~~-----lp~~d~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~ 236 (267)
...||.|+.|.+. +......... ......++|+.+.++|||||.|+.+++.-.+ +|. ..+..+
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~---eENE~vV~~~ 303 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP---EENEEVVERF 303 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch---hcCHHHHHHH
Confidence 4469999999754 2111101011 1233578999999999999999888774333 333 344555
Q ss_pred HHhC
Q 041272 237 ARSL 240 (267)
Q Consensus 237 ~~~l 240 (267)
++..
T Consensus 304 L~~~ 307 (355)
T COG0144 304 LERH 307 (355)
T ss_pred HHhC
Confidence 5553
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-10 Score=95.18 Aligned_cols=137 Identities=16% Similarity=0.200 Sum_probs=86.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC--C
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV--P 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~--~ 169 (267)
..+=.++||+|||||..+..+-.+. .+++|||+|+.|++.|.++-- .. .+.+ .++..+. .
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a------~~ltGvDiS~nMl~kA~eKg~-------YD--~L~~---Aea~~Fl~~~ 184 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMA------DRLTGVDISENMLAKAHEKGL-------YD--TLYV---AEAVLFLEDL 184 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHH------hhccCCchhHHHHHHHHhccc-------hH--HHHH---HHHHHHhhhc
Confidence 3344699999999999998888774 679999999999999987421 11 1122 2222222 1
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCC-----hhh-HHHHHHHH-HhCCC
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGG-----REE-LEAVEAFA-RSLSV 242 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----~~~-~~~~~~~~-~~l~~ 242 (267)
.+..+|+|+.. .++.-.-..+.++-.+...|+|||.+.+++-.....+ +.. ..--+.|. ..+..
T Consensus 185 ~~er~DLi~Aa---------DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~ 255 (287)
T COG4976 185 TQERFDLIVAA---------DVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAA 255 (287)
T ss_pred cCCcccchhhh---------hHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHh
Confidence 23478988776 2333234446788889999999999999876443322 000 00011222 23455
Q ss_pred CceEEEEEeeecC
Q 041272 243 DDWICCKFQMLNR 255 (267)
Q Consensus 243 ~~~~~~~~~~~~~ 255 (267)
.+++++..+..+-
T Consensus 256 ~Gl~~i~~~~tti 268 (287)
T COG4976 256 SGLEVIAIEDTTI 268 (287)
T ss_pred cCceEEEeecccc
Confidence 6788877666544
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.3e-09 Score=80.86 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=108.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc--CC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI--VP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~--~~ 169 (267)
.+.|.-|||+|.|||.+|..+.++.-. ...+++||.|++.+..-.+.. +.+.++.+++.++... ..
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~---~~~L~~iE~~~dF~~~L~~~~---------p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVR---PESLTAIEYSPDFVCHLNQLY---------PGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCC---ccceEEEEeCHHHHHHHHHhC---------CCccccccchhhHHHHHhhc
Confidence 456779999999999999888776432 478999999999998887753 4566889998888753 34
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
.+..||.+++.++.+..+ ....-++++++...|.+||-++-..+...+ . ..+....|.+.+
T Consensus 114 ~gq~~D~viS~lPll~~P-------~~~~iaile~~~~rl~~gg~lvqftYgp~s--~----------v~l~r~~y~v~~ 174 (194)
T COG3963 114 KGQFFDSVISGLPLLNFP-------MHRRIAILESLLYRLPAGGPLVQFTYGPLS--P----------VLLGRGDYNVQH 174 (194)
T ss_pred CCCeeeeEEeccccccCc-------HHHHHHHHHHHHHhcCCCCeEEEEEecCCC--c----------ccccccceeEEE
Confidence 456899999998764443 344568999999999999999887773111 0 123445689999
Q ss_pred EeeecCCCCceEEEeec
Q 041272 250 FQMLNRPLAPVLVFLFK 266 (267)
Q Consensus 250 ~~~~~~~~~p~~~~~~k 266 (267)
++++-++-||..+.+-+
T Consensus 175 ~~~vvRN~PPA~v~~~~ 191 (194)
T COG3963 175 FDFVVRNFPPAQVWIYR 191 (194)
T ss_pred eeEEEecCCceeEEEee
Confidence 99999999997776543
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.6e-10 Score=89.27 Aligned_cols=127 Identities=18% Similarity=0.149 Sum_probs=85.9
Q ss_pred chhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE
Q 041272 77 GTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL 156 (267)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~ 156 (267)
..++.+..-.++....-+|.+|||+.||||.++++.+.+- ..+|+.||.++.+++..++|++..+ ...++.+
T Consensus 25 ~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-----A~~v~fVE~~~~a~~~i~~N~~~l~---~~~~~~v 96 (183)
T PF03602_consen 25 TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-----AKSVVFVEKNRKAIKIIKKNLEKLG---LEDKIRV 96 (183)
T ss_dssp SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT------SEEEEEES-HHHHHHHHHHHHHHT----GGGEEE
T ss_pred cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-----CCeEEEEECCHHHHHHHHHHHHHhC---CCcceee
Confidence 3455554444444331368899999999999999988872 4699999999999999999999877 3446888
Q ss_pred EecChhh-hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHH--hcccCCcEEEEEEe
Q 041272 157 FNMCHSR-MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE--RILIPGGLISMVVY 220 (267)
Q Consensus 157 ~~~~~~~-l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 220 (267)
+..+... +.........||+|+.|+||-... ....+++.+. .+|+++|++++-..
T Consensus 97 ~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~---------~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 97 IKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL---------YYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EESSHHHHHHHHHHCTS-EEEEEE--STTSCH---------HHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred eccCHHHHHHhhcccCCCceEEEECCCcccch---------HHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 8777553 333322345899999998873221 0256677766 78999999987665
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.9e-10 Score=100.43 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=80.8
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
+.+|||++||+|..++.+|...+. .+|+++|+++.+++.+++|++.++ ..+++++++|...+... ...|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~----~~V~a~Din~~Av~~a~~N~~~N~----~~~~~v~~~Da~~~l~~---~~~f 126 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGV----EKVTLNDINPDAVELIKKNLELNG----LENEKVFNKDANALLHE---ERKF 126 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCC----CEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEhhhHHHHHhh---cCCC
Confidence 469999999999999999987542 589999999999999999999987 45677887776554321 2369
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
|+|+.|++ +. ...+++.+.+.+++||+++++.
T Consensus 127 D~V~lDP~---Gs----------~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 127 DVVDIDPF---GS----------PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CEEEECCC---CC----------cHHHHHHHHHHhcCCCEEEEEe
Confidence 99999952 11 1368888888899999999984
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.5e-10 Score=92.14 Aligned_cols=117 Identities=19% Similarity=0.134 Sum_probs=77.5
Q ss_pred HHHhhHHHhhhcCCCC-EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec
Q 041272 81 TIAANGVWKHVVRKGD-TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM 159 (267)
Q Consensus 81 ~~~~~~l~~~~l~~~~-~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~ 159 (267)
..+...+.. ..++. .++|+|||+|-.++.+|.+. .+|+|+|+|++|++.|++.-.... .+...- .
T Consensus 21 tdw~~~ia~--~~~~h~~a~DvG~G~Gqa~~~iae~~------k~VIatD~s~~mL~~a~k~~~~~y-----~~t~~~-m 86 (261)
T KOG3010|consen 21 TDWFKKIAS--RTEGHRLAWDVGTGNGQAARGIAEHY------KEVIATDVSEAMLKVAKKHPPVTY-----CHTPST-M 86 (261)
T ss_pred HHHHHHHHh--hCCCcceEEEeccCCCcchHHHHHhh------hhheeecCCHHHHHHhhcCCCccc-----ccCCcc-c
Confidence 444555543 33444 89999999997778888875 579999999999999988654432 111111 1
Q ss_pred ChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCc-EEEEEEec
Q 041272 160 CHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG-LISMVVYV 221 (267)
Q Consensus 160 ~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG-~l~i~~~~ 221 (267)
...++.++...+.++|+|++. ... |.=+.++++++++|+||+.| .+++-.+.
T Consensus 87 s~~~~v~L~g~e~SVDlI~~A---------qa~-HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 87 SSDEMVDLLGGEESVDLITAA---------QAV-HWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred cccccccccCCCcceeeehhh---------hhH-HhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 112334444445689999876 222 22334689999999998665 77776665
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-10 Score=94.42 Aligned_cols=110 Identities=18% Similarity=0.259 Sum_probs=78.2
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE-EecChhhhhhcCCCCCcEE
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL-FNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~-~~~~~~~l~~~~~~~~~~d 175 (267)
+|||+|||.|.....+.+..+. ++.+|+++|.|+.+++..+++..... .++.. +.+-..+-.......+.+|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n--~~l~v~acDfsp~Ai~~vk~~~~~~e-----~~~~afv~Dlt~~~~~~~~~~~svD 146 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPN--NRLKVYACDFSPRAIELVKKSSGYDE-----SRVEAFVWDLTSPSLKEPPEEGSVD 146 (264)
T ss_pred hheeeccCCCcccchhhhcCCC--CCeEEEEcCCChHHHHHHHhccccch-----hhhcccceeccchhccCCCCcCccc
Confidence 8999999999999999987542 45899999999999999998876532 33332 2221111122333445788
Q ss_pred EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 176 LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+++.-+-. ...+++....+++++.++|||||.+++-+|
T Consensus 147 ~it~IFvL-------SAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 147 IITLIFVL-------SAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred eEEEEEEE-------eccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 77655211 112566778999999999999999999887
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=102.16 Aligned_cols=117 Identities=13% Similarity=0.079 Sum_probs=90.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+..+||||||.|.++..+|+.. |+..++|+|++...+..|.+.+.+.+ ..|+.++.++...+...++ +.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~----p~~~~iGiE~~~~~~~~~~~~~~~~~----l~N~~~~~~~~~~~~~~~~-~~s 417 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN----PDALFIGVEVYLNGVANVLKLAGEQN----ITNFLLFPNNLDLILNDLP-NNS 417 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC----CCCCEEEEEeeHHHHHHHHHHHHHcC----CCeEEEEcCCHHHHHHhcC-ccc
Confidence 46689999999999999999985 46899999999999999999887776 6789888887766666654 447
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|.+..+++- |++........=...++++.+.++|||||.+.+.+-
T Consensus 418 v~~i~i~FPD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 418 LDGIYILFPD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred ccEEEEECCC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 9999998754 222222111112236899999999999999988654
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=88.47 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=76.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCC-----CcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESS-----AGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p-----~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~ 165 (267)
..+++..|||--||+|.+.++.|.......| ..+++|.|+++.+++.|++|++..+ ....+.+.+.|..++.
T Consensus 25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---VEDYIDFIQWDARELP 101 (179)
T ss_dssp T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----CGGEEEEE--GGGGG
T ss_pred CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc---cCCceEEEecchhhcc
Confidence 4678899999999999999998876543000 1138999999999999999999887 4567888887776666
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCcee--echhhHHHHHHHHHhcccC
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVI--TTSETTKMALEAAERILIP 211 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~--~~~~~~~~~l~~~~~~Lkp 211 (267)
..+..+|.|++|+|| ..+.-. ....-+.++++++.++|++
T Consensus 102 ---~~~~~~d~IvtnPPy---G~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 102 ---LPDGSVDAIVTNPPY---GRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp ---GTTSBSCEEEEE--S---TTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred ---cccCCCCEEEECcch---hhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 233479999999766 222111 1134457889999999999
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-09 Score=92.57 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=71.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+++++.++|.-+|.|..+..+++.++ .++|+|+|.++.+++.|+++++..+ .++.+++++..++...+..
T Consensus 17 ~~~~ggiyVD~TlG~GGHS~~iL~~l~----~g~vigiD~D~~Al~~ak~~L~~~~-----~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 17 NIKPDGIYIDCTLGFGGHSKAILEQLG----TGRLIGIDRDPQAIAFAKERLSDFE-----GRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred CcCCCCEEEEeCCCChHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHhhcC-----CcEEEEeCCHHHHHHHHHh
Confidence 356888999999999999999999874 3899999999999999999987643 6899999999988775532
Q ss_pred --CCcEEEEEEeCCC
Q 041272 171 --STAVRLVAFNLGY 183 (267)
Q Consensus 171 --~~~~d~ii~~~~~ 183 (267)
...+|.|++|+|.
T Consensus 88 ~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 88 LLVTKIDGILVDLGV 102 (305)
T ss_pred cCCCcccEEEEeccC
Confidence 2369999999987
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-09 Score=87.31 Aligned_cols=121 Identities=13% Similarity=0.170 Sum_probs=96.8
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
....++..++++ +-..+++||||.=||+.++.+|..+++ +++|+++|++++..+.+.+..+..+ ...+++++
T Consensus 59 ~d~g~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~---dGrv~a~eid~~~~~~~~~~~k~ag---v~~KI~~i 130 (237)
T KOG1663|consen 59 PDKGQFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPE---DGRVVAIEIDADAYEIGLELVKLAG---VDHKITFI 130 (237)
T ss_pred hHHHHHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCC---CceEEEEecChHHHHHhHHHHHhcc---ccceeeee
Confidence 334445555543 335679999999999999999999987 8999999999999999998888888 68899999
Q ss_pred ecChhh-hhhcCCC--CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 158 NMCHSR-MEEIVPK--STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 158 ~~~~~~-l~~~~~~--~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
++...+ +.+...+ ...||+++.+. +...+....+++.++||+||++++-
T Consensus 131 ~g~a~esLd~l~~~~~~~tfDfaFvDa------------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 131 EGPALESLDELLADGESGTFDFAFVDA------------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ecchhhhHHHHHhcCCCCceeEEEEcc------------chHHHHHHHHHHHhhcccccEEEEe
Confidence 987764 4444433 46899999882 3455668999999999999999873
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-09 Score=87.12 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=44.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~ 144 (267)
...+..+|||||-+|.+++.+|+.++. ..|.|+||++..|..|+++++.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~----r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGP----RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhcc----ceeeEeeccHHHHHHHHHhccc
Confidence 345679999999999999999999875 7899999999999999999875
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=89.36 Aligned_cols=141 Identities=18% Similarity=0.184 Sum_probs=99.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCc-EEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAG-CVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.|.+|||.+.|-|+.++..+++ ++ +|+.+|.++..++.|+-|--..+. ...+++++.+|..++-+.+.
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r------GA~~VitvEkdp~VLeLa~lNPwSr~l--~~~~i~iilGD~~e~V~~~~- 202 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER------GAIHVITVEKDPNVLELAKLNPWSREL--FEIAIKIILGDAYEVVKDFD- 202 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc------CCcEEEEEeeCCCeEEeeccCCCCccc--cccccEEecccHHHHHhcCC-
Confidence 457999999999999999999988 45 999999999999999887543331 23468999988877766554
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCC-hhhHHHHHHHHHhCCCCceEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGG-REELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
+.+||+|+-|++-+..+ ..--.+++.++++|+|||||+++ -|.+.++. ..-........+.|.+.+|.++.
T Consensus 203 D~sfDaIiHDPPRfS~A------geLYseefY~El~RiLkrgGrlF--HYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 203 DESFDAIIHDPPRFSLA------GELYSEEFYRELYRILKRGGRLF--HYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred ccccceEeeCCCccchh------hhHhHHHHHHHHHHHcCcCCcEE--EEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence 44899999996532211 11223789999999999999994 34344431 11223334555666677787554
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-09 Score=84.73 Aligned_cols=113 Identities=16% Similarity=0.245 Sum_probs=74.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh-h-hhcCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR-M-EEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~-l-~~~~~ 169 (267)
...+.+|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++.++. ....++.+...+..+ . .+..
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~----~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~- 115 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG----AARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLL- 115 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-----SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHH-
T ss_pred hcCCceEEEECCccchhHHHHHhccC----CceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCccccccc-
Confidence 45788999999999999999998843 37999999999 99999999988651 123556665544332 2 1222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...+||+|+.. .++......+.+++-+.++|+++|.+++...
T Consensus 116 ~~~~~D~Ilas---------Dv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 116 EPHSFDVILAS---------DVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp S-SSBSEEEEE---------S--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred ccccCCEEEEe---------cccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 23479999887 5666777788999999999999999666554
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.3e-09 Score=90.40 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=99.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
...+|.+|||+-+|.|.+++.+|+.- ..+|+++|++|.+++..++|++.|+ ....+..+++|...+....
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g-----~~~V~A~diNP~A~~~L~eNi~LN~---v~~~v~~i~gD~rev~~~~-- 254 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKG-----RPKVYAIDINPDAVEYLKENIRLNK---VEGRVEPILGDAREVAPEL-- 254 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcC-----CceEEEEecCHHHHHHHHHHHHhcC---ccceeeEEeccHHHhhhcc--
Confidence 45679999999999999999999873 2359999999999999999999998 4556889998886665433
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChh-hHHHHHHHHHhCCCCceEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGRE-ELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 249 (267)
..+|-|+++.+ ....+++..+.+.+++||++.+..........+ ....+......... ...+..
T Consensus 255 -~~aDrIim~~p-------------~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~-~~~v~~ 319 (341)
T COG2520 255 -GVADRIIMGLP-------------KSAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGY-KVEVLK 319 (341)
T ss_pred -ccCCEEEeCCC-------------CcchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccC-cceEEE
Confidence 46899999842 233578999999999999998776633222111 22344444444321 244444
Q ss_pred EeeecC
Q 041272 250 FQMLNR 255 (267)
Q Consensus 250 ~~~~~~ 255 (267)
..-+++
T Consensus 320 ~r~Vks 325 (341)
T COG2520 320 VRRVKS 325 (341)
T ss_pred EEEecc
Confidence 444443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-08 Score=81.47 Aligned_cols=157 Identities=13% Similarity=0.174 Sum_probs=101.9
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+++|.+||-+|..+|.....++..+++ .+.|++||.|+......-.-+++ -.|+--+..|+..-..+..
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~---~G~VYaVEfs~r~~rdL~~la~~------R~NIiPIl~DAr~P~~Y~~ 139 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGP---DGVVYAVEFSPRSMRDLLNLAKK------RPNIIPILEDARHPEKYRM 139 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHHHH------STTEEEEES-TTSGGGGTT
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCC---CCcEEEEEecchhHHHHHHHhcc------CCceeeeeccCCChHHhhc
Confidence 45789999999999999999999999985 68999999999765555444443 3577777777665555433
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCC-hhhHHHHHHHHHhCCCCceEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGG-REELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 248 (267)
--..+|+++.|. ..+...+-++.++...||+||.++++.-...... .........-.+.+...+|.+.
T Consensus 140 lv~~VDvI~~DV-----------aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 140 LVEMVDVIFQDV-----------AQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp TS--EEEEEEE------------SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred ccccccEEEecC-----------CChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence 334799999993 2456667888999999999999998875322111 1122333444555566678777
Q ss_pred EEeeecC--CCCceEEEeec
Q 041272 249 KFQMLNR--PLAPVLVFLFK 266 (267)
Q Consensus 249 ~~~~~~~--~~~p~~~~~~k 266 (267)
....+.. .++-.++...+
T Consensus 209 e~i~LePy~~dH~~vv~~y~ 228 (229)
T PF01269_consen 209 EQITLEPYERDHAMVVGRYR 228 (229)
T ss_dssp EEEE-TTTSTTEEEEEEEE-
T ss_pred eEeccCCCCCCcEEEEEEec
Confidence 7666655 35555554443
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-09 Score=93.10 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=65.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++++|||||||+|.+|..+++. +.+|+++|+++.+++.+++++...+ ...+++++++|..... .
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~------~~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~---~- 99 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQL------AKKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTE---F- 99 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHh------CCcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhc---c-
Confidence 4678899999999999999999987 3689999999999999999987654 2468999987765432 1
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
..+|.+++|++|
T Consensus 100 -~~~d~VvaNlPY 111 (294)
T PTZ00338 100 -PYFDVCVANVPY 111 (294)
T ss_pred -cccCEEEecCCc
Confidence 257999999887
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-08 Score=79.88 Aligned_cols=127 Identities=20% Similarity=0.146 Sum_probs=88.4
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
.++.+..-.++...--.|.++||+-+|+|.++++.+.+. ..+++.||.+..++...++|++..+ ...++.++
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-----A~~~~~vE~~~~a~~~l~~N~~~l~---~~~~~~~~ 98 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-----AARVVFVEKDRKAVKILKENLKALG---LEGEARVL 98 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-----CceEEEEecCHHHHHHHHHHHHHhC---CccceEEE
Confidence 444444444433311257899999999999999999883 4799999999999999999998876 45778888
Q ss_pred ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHH--HHhcccCCcEEEEEEe
Q 041272 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEA--AERILIPGGLISMVVY 220 (267)
Q Consensus 158 ~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~--~~~~LkpgG~l~i~~~ 220 (267)
..+...+.........||+|+.|+||--. .-.....+.. -..+|+|+|.+++-..
T Consensus 99 ~~da~~~L~~~~~~~~FDlVflDPPy~~~--------l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 99 RNDALRALKQLGTREPFDLVFLDPPYAKG--------LLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred eecHHHHHHhcCCCCcccEEEeCCCCccc--------hhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 77776554444443469999999877210 1111222222 3567999999977543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-09 Score=91.84 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=60.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..++++. .+|+|+|++++|++.+++++.. .+++++++|..++. .+
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~------~~v~avE~d~~~~~~~~~~~~~-------~~v~~i~~D~~~~~---~~ 102 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERA------AKVTAVEIDRDLAPILAETFAE-------DNLTIIEGDALKVD---LS 102 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhC------CcEEEEECCHHHHHHHHHhhcc-------CceEEEEChhhcCC---HH
Confidence 45678899999999999999999983 5899999999999999987642 47888887765542 11
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
+...+.+++|++|
T Consensus 103 ~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ELQPLKVVANLPY 115 (272)
T ss_pred HcCcceEEEeCCc
Confidence 1115899999877
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-09 Score=90.35 Aligned_cols=76 Identities=21% Similarity=0.184 Sum_probs=62.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++.. ..+++++++|..++. .+
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~------~~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~---~~ 90 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKR------AKKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD---LP 90 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC---ch
Confidence 4567899999999999999999988 36899999999999999988754 357888887664432 12
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
.+|.|++|++|
T Consensus 91 --~~d~Vv~NlPy 101 (258)
T PRK14896 91 --EFNKVVSNLPY 101 (258)
T ss_pred --hceEEEEcCCc
Confidence 47999999877
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-09 Score=92.05 Aligned_cols=102 Identities=23% Similarity=0.361 Sum_probs=76.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+-.+..|||+|||||.++...|+.. ..+|++||.|.-+ +.|++.+..|+ ....++++++..+++ .++ -
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-----A~~V~aVe~S~ia-~~a~~iv~~N~---~~~ii~vi~gkvEdi-~LP--~ 125 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-----ARKVYAVEASSIA-DFARKIVKDNG---LEDVITVIKGKVEDI-ELP--V 125 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-----cceEEEEechHHH-HHHHHHHHhcC---ccceEEEeecceEEE-ecC--c
Confidence 4568899999999999999999873 4799999988755 99999999988 456689998888777 333 3
Q ss_pred CcEEEEEEe-CCCCCCCCCceeechhhHHHHHHHH----HhcccCCcEEE
Q 041272 172 TAVRLVAFN-LGYLPGGDKSVITTSETTKMALEAA----ERILIPGGLIS 216 (267)
Q Consensus 172 ~~~d~ii~~-~~~lp~~d~~~~~~~~~~~~~l~~~----~~~LkpgG~l~ 216 (267)
.++|+|++- +||.-. .+.+|..+ =+.|+|||.++
T Consensus 126 eKVDiIvSEWMGy~Ll-----------~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 126 EKVDIIVSEWMGYFLL-----------YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred cceeEEeehhhhHHHH-----------HhhhhhhhhhhhhhccCCCceEc
Confidence 479999987 233111 12233332 36799999986
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-08 Score=85.71 Aligned_cols=76 Identities=22% Similarity=0.188 Sum_probs=59.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..++++. .+|+++|+++.+++.+++++.. ..+++++.+|...+.. .
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~------~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~---~ 90 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRA------KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL---P 90 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhC------CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh---h
Confidence 45678899999999999999999984 4699999999999999987753 3578888776644321 1
Q ss_pred CCcEE---EEEEeCCC
Q 041272 171 STAVR---LVAFNLGY 183 (267)
Q Consensus 171 ~~~~d---~ii~~~~~ 183 (267)
.+| .+++|++|
T Consensus 91 --~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 --DFPKQLKVVSNLPY 104 (253)
T ss_pred --HcCCcceEEEcCCh
Confidence 244 88999755
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-08 Score=87.85 Aligned_cols=84 Identities=25% Similarity=0.356 Sum_probs=62.6
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++..++|.--|.|..+..+.+.++ +++|+|+|.++++++.|++++.... .++.++++...++...+..
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~----~~~li~~DrD~~a~~~a~~~l~~~~-----~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLP----NGRLIGIDRDPEALERAKERLKKFD-----DRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-T----T-EEEEEES-HHHHHHHHCCTCCCC-----TTEEEEES-GGGHHHHHHH
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCC----CCeEEEecCCHHHHHHHHHHHhhcc-----ceEEEEeccHHHHHHHHHH
Confidence 367888999999999999999999875 4999999999999999999987643 7899999988888775433
Q ss_pred ---CCcEEEEEEeCCC
Q 041272 171 ---STAVRLVAFNLGY 183 (267)
Q Consensus 171 ---~~~~d~ii~~~~~ 183 (267)
...+|.|++|+|.
T Consensus 88 ~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 88 LNGINKVDGILFDLGV 103 (310)
T ss_dssp TTTTS-EEEEEEE-S-
T ss_pred ccCCCccCEEEEcccc
Confidence 2479999999987
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=93.72 Aligned_cols=104 Identities=21% Similarity=0.289 Sum_probs=74.2
Q ss_pred CCEEEEecCCCChHHHHHHHhc---CCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 95 GDTVVDATCGNGYDTLMMLKMV---ADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~---~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+..|||+|||+|.++...++.. +. ..+|++||.++.++...++.++.++ +.++|++++++.+++...
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~---a~~VyAVEkn~~A~~~l~~~v~~n~---w~~~V~vi~~d~r~v~lp---- 256 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGG---AVKVYAVEKNPNAVVTLQKRVNANG---WGDKVTVIHGDMREVELP---- 256 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCC---ESEEEEEESSTHHHHHHHHHHHHTT---TTTTEEEEES-TTTSCHS----
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCC---CeEEEEEcCCHhHHHHHHHHHHhcC---CCCeEEEEeCcccCCCCC----
Confidence 4689999999999987766542 21 3699999999999988888777776 568899999877666542
Q ss_pred CcEEEEEEeC-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 172 TAVRLVAFNL-GYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 172 ~~~d~ii~~~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
.++|+||+-+ |.+-.. +...+.|..+-|.|||||+++
T Consensus 257 ekvDIIVSElLGsfg~n--------El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 257 EKVDIIVSELLGSFGDN--------ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp S-EEEEEE---BTTBTT--------TSHHHHHHHGGGGEEEEEEEE
T ss_pred CceeEEEEeccCCcccc--------ccCHHHHHHHHhhcCCCCEEe
Confidence 2799999873 432222 223567888899999999985
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-08 Score=89.97 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=82.8
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
-+|||+.||+|..++.++.+.+. ..+|+++|+++++++.+++|++.++ ..++++++.|...+.... ...||
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~g---a~~Vv~nD~n~~Av~~i~~N~~~N~----~~~~~v~~~Da~~~l~~~--~~~fD 116 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEG---VREVFANDINPKAVESIKNNVEYNS----VENIEVPNEDAANVLRYR--NRKFH 116 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEchhHHHHHHHh--CCCCC
Confidence 58999999999999999987521 3689999999999999999999887 457888888777665432 23699
Q ss_pred EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 176 LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+|..|+... +..+++.+.+.+++||++++++
T Consensus 117 vIdlDPfGs-------------~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 117 VIDIDPFGT-------------PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred EEEeCCCCC-------------cHHHHHHHHHhcccCCEEEEEe
Confidence 999995211 1378999999999999999985
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.2e-09 Score=82.15 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=63.0
Q ss_pred EEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHH
Q 041272 126 YGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA 205 (267)
Q Consensus 126 ~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~ 205 (267)
+|+|+|++|++.|+++.+.... ....++++++++..++ ..++.+||+|++.. .+++.++..++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~-~~~~~i~~~~~d~~~l---p~~~~~fD~v~~~~---------~l~~~~d~~~~l~ei 67 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR-SCYKCIEWIEGDAIDL---PFDDCEFDAVTMGY---------GLRNVVDRLRAMKEM 67 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc-cCCCceEEEEechhhC---CCCCCCeeEEEecc---------hhhcCCCHHHHHHHH
Confidence 4899999999999887653210 0134789998777655 33455899999874 334445678999999
Q ss_pred HhcccCCcEEEEEEecC
Q 041272 206 ERILIPGGLISMVVYVG 222 (267)
Q Consensus 206 ~~~LkpgG~l~i~~~~~ 222 (267)
+|+|||||.+++.++..
T Consensus 68 ~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 68 YRVLKPGSRVSILDFNK 84 (160)
T ss_pred HHHcCcCeEEEEEECCC
Confidence 99999999999988753
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.6e-09 Score=81.26 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=67.5
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEE
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL 176 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ 176 (267)
.|+|+.||.|..++.+|+.. .+|++||+++..++.|+.|++-.| ...+++++++|..++.........+|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~------~~Viaidid~~~~~~a~hNa~vYG---v~~~I~~i~gD~~~~~~~~~~~~~~D~ 72 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF------DRVIAIDIDPERLECAKHNAEVYG---VADNIDFICGDFFELLKRLKSNKIFDV 72 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-------EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SE
T ss_pred EEEEeccCcCHHHHHHHHhC------CeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCCHHHHHhhccccccccE
Confidence 79999999999999999984 689999999999999999999988 578999999998877654433222799
Q ss_pred EEEeCCCC-----CCCCCce--eechhhHHHHHHHHHhcc
Q 041272 177 VAFNLGYL-----PGGDKSV--ITTSETTKMALEAAERIL 209 (267)
Q Consensus 177 ii~~~~~l-----p~~d~~~--~~~~~~~~~~l~~~~~~L 209 (267)
|+.++|+= ......+ ...+-...++++.+.++-
T Consensus 73 vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t 112 (163)
T PF09445_consen 73 VFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT 112 (163)
T ss_dssp EEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-
T ss_pred EEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhhC
Confidence 99997661 1111111 112334567777766653
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9e-08 Score=81.86 Aligned_cols=85 Identities=21% Similarity=0.320 Sum_probs=73.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+++++..+|..-|.|..+..+.+.++. .++++|+|.++.+++.|++.+...+ .++.++++...++...+..
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~---~~~li~~DrD~~Ai~~a~~~l~~~~-----~r~~~v~~~F~~l~~~l~~ 91 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEKLPD---LGRLIGIDRDPQAIAIAKERLKEFD-----GRVTLVHGNFANLAEALKE 91 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHhCCC---CCeEEEEcCCHHHHHHHHHHhhccC-----CcEEEEeCcHHHHHHHHHh
Confidence 5678899999999999999999999865 5789999999999999999998854 7999999988888776543
Q ss_pred C--CcEEEEEEeCCC
Q 041272 171 S--TAVRLVAFNLGY 183 (267)
Q Consensus 171 ~--~~~d~ii~~~~~ 183 (267)
. ..+|-|++|+|.
T Consensus 92 ~~i~~vDGiL~DLGV 106 (314)
T COG0275 92 LGIGKVDGILLDLGV 106 (314)
T ss_pred cCCCceeEEEEeccC
Confidence 2 479999999877
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-08 Score=84.84 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=77.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
.....+|||||+|+|.++..+++.. |+.+++.+|. |+.++.+++ ..+++++.+|.. +.++.
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~----P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~P~- 158 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY----PNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPLPV- 158 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS----TTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCCSS-
T ss_pred ccCccEEEeccCcchHHHHHHHHHC----CCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhhcc-
Confidence 4456799999999999999999985 5699999998 888888887 268999876653 33322
Q ss_pred CcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCC--cEEEEEEecCC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPG--GLISMVVYVGH 223 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~Lkpg--G~l~i~~~~~~ 223 (267)
+|+++.. .++|. .+....+|+++++.|+|| |+|+|.+..-.
T Consensus 159 --~D~~~l~---------~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 159 --ADVYLLR---------HVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp --ESEEEEE---------SSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred --ccceeee---------hhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 7888777 45552 345689999999999999 99999887533
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.3e-08 Score=85.73 Aligned_cols=117 Identities=18% Similarity=0.085 Sum_probs=82.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
...+||.||+|.|..+..+++..+ ..+|+.||+++++++.|++.+...+.....++++++.+|........ ...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~----~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~ 176 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT----VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEK 176 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC----CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCC
Confidence 446999999999999999888643 36899999999999999998864321112478999988776654332 347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHH-HHHhcccCCcEEEEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALE-AAERILIPGGLISMVV 219 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~ 219 (267)
||+|+.++.. |...... ..-...++++ .+.+.|+|||++++..
T Consensus 177 yDvIi~D~~d-p~~~~~~--~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 177 FDVIIGDLAD-PVEGGPC--YQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ccEEEecCCC-ccccCcc--hhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999999522 1100000 0011257887 8899999999987643
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-08 Score=86.79 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=78.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+..|||+|||+|.++...|+. | ..+|++||.| +|.+.|++..+.|+ +..++.++.+..+++.- + .+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-G----A~~vYAvEAS-~MAqyA~~Lv~~N~---~~~rItVI~GKiEdieL--P--Ek 243 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-G----AKKVYAVEAS-EMAQYARKLVASNN---LADRITVIPGKIEDIEL--P--EK 243 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-C----cceEEEEehh-HHHHHHHHHHhcCC---ccceEEEccCccccccC--c--hh
Confidence 5779999999999999998886 2 4799999976 58899999988877 67899999877665542 2 26
Q ss_pred EEEEEEeC-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 174 VRLVAFNL-GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 174 ~d~ii~~~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+|++|+.+ +++-.. +...+..-.+.+.|||.|.++=+.
T Consensus 244 ~DviISEPMG~mL~N--------ERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 244 VDVIISEPMGYMLVN--------ERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred ccEEEeccchhhhhh--------HHHHHHHHHHHhhcCCCCcccCcc
Confidence 89999874 443322 222333344679999999986443
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.2e-08 Score=86.38 Aligned_cols=127 Identities=20% Similarity=0.285 Sum_probs=78.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCC---CCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVAD---ESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~---~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..++.+|+|.+||+|.+...+.+++.. ..+..+++|+|+++.++..|+-++...+. ...+..+..++.- ....
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~--~~~~~~i~~~d~l--~~~~ 119 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI--DNSNINIIQGDSL--ENDK 119 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH--HCBGCEEEES-TT--TSHS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc--ccccccccccccc--cccc
Confidence 456778999999999999988875410 00147999999999999999988866541 1222335544332 2211
Q ss_pred C-CCCcEEEEEEeCCCCCC--CCCceee----------chhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 169 P-KSTAVRLVAFNLGYLPG--GDKSVIT----------TSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 169 ~-~~~~~d~ii~~~~~lp~--~d~~~~~----------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
. ....||+|++|+|+-.. .+..... .......++..+.+.||+||++.++...+
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 1 23579999999988443 1111110 11222458899999999999998888754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-07 Score=78.88 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=85.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+...+||-||-|.|..+..+.++.+ -.+|+.||+++..++.|++.+.........++++++.+|.........+.
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~----~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~- 149 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPP----VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEE- 149 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-----SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCcCceEEEcCCChhhhhhhhhcCC----cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCC-
Confidence 4578999999999999999987632 36999999999999999998765431112468999988877665544332
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|+.++.. |..... .-...++++.+.+.|+|||++++...
T Consensus 150 ~yDvIi~D~~d-p~~~~~----~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 150 KYDVIIVDLTD-PDGPAP----NLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp -EEEEEEESSS-TTSCGG----GGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccEEEEeCCC-CCCCcc----cccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 79999999644 222111 02236899999999999999988763
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.7e-08 Score=80.52 Aligned_cols=135 Identities=17% Similarity=0.163 Sum_probs=96.7
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
++..+....+.||.+|+|-|+|+|.++..+++.+++ .++++.+|+.+...+.|.+..++.+ +..+++++.-|.-
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~p---tGhl~tfefH~~Ra~ka~eeFr~hg---i~~~vt~~hrDVc 167 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAP---TGHLYTFEFHETRAEKALEEFREHG---IGDNVTVTHRDVC 167 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCc---CcceEEEEecHHHHHHHHHHHHHhC---CCcceEEEEeecc
Confidence 333444457899999999999999999999999976 7999999999999999999999988 6788888764432
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCC
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSV 242 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (267)
... +..++..+|.|+.|+ +.+..++-.++++||.+|.- +.++.. -.++++.-++.+..
T Consensus 168 ~~G-F~~ks~~aDaVFLDl--------------PaPw~AiPha~~~lk~~g~r-~csFSP------CIEQvqrtce~l~~ 225 (314)
T KOG2915|consen 168 GSG-FLIKSLKADAVFLDL--------------PAPWEAIPHAAKILKDEGGR-LCSFSP------CIEQVQRTCEALRS 225 (314)
T ss_pred cCC-ccccccccceEEEcC--------------CChhhhhhhhHHHhhhcCce-EEeccH------HHHHHHHHHHHHHh
Confidence 221 222255789999995 33356777788889977742 233321 23455555555554
Q ss_pred Cce
Q 041272 243 DDW 245 (267)
Q Consensus 243 ~~~ 245 (267)
.+|
T Consensus 226 ~gf 228 (314)
T KOG2915|consen 226 LGF 228 (314)
T ss_pred CCC
Confidence 444
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=8e-08 Score=80.54 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=75.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHH-HHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKS-TSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~-a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
.++.+|||+|||||.++..+++. | ..+|+|+|+++.|+.. .+++.+-.. ....|++. ... .+...+-
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g----a~~v~avD~~~~~l~~~l~~~~~v~~--~~~~ni~~--~~~---~~~~~d~ 141 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G----AKEVYGVDVGYNQLAEKLRQDERVKV--LERTNIRY--VTP---ADIFPDF 141 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C----CCEEEEEeCCHHHHHHHHhcCCCeeE--eecCCccc--CCH---hHcCCCc
Confidence 36779999999999999999986 3 3689999999988875 222211000 00122221 111 1221122
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCCh-------------hhHHHHHHHHH
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGR-------------EELEAVEAFAR 238 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------------~~~~~~~~~~~ 238 (267)
..+|+++..+ ..++..+.++|+| |.+++..-+....+. .....+.+...
T Consensus 142 ~~~DvsfiS~-----------------~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~ 203 (228)
T TIGR00478 142 ATFDVSFISL-----------------ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVID 203 (228)
T ss_pred eeeeEEEeeh-----------------HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHH
Confidence 2567666553 2478899999999 877765533221111 11233445555
Q ss_pred hCCCCceEEEEEee
Q 041272 239 SLSVDDWICCKFQM 252 (267)
Q Consensus 239 ~l~~~~~~~~~~~~ 252 (267)
.....+|.+..+..
T Consensus 204 ~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 204 KGESPDFQEKKIIF 217 (228)
T ss_pred HHHcCCCeEeeEEE
Confidence 55556777766544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=82.48 Aligned_cols=141 Identities=20% Similarity=0.252 Sum_probs=99.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
...++.+|||+++|.|.-+..+|+.++. .+.|++.|+++..+...++++++.| ..++.....|.........
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~---~g~i~A~D~~~~Rl~~l~~~~~r~g----~~~v~~~~~D~~~~~~~~~- 153 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGN---KGEIVANDISPKRLKRLKENLKRLG----VFNVIVINADARKLDPKKP- 153 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTT---TSEEEEEESSHHHHHHHHHHHHHTT-----SSEEEEESHHHHHHHHHH-
T ss_pred cccccccccccccCCCCceeeeeecccc---hhHHHHhccCHHHHHHHHHHHHhcC----CceEEEEeecccccccccc-
Confidence 4568899999999999999999999864 5899999999999999999999988 6777777655554432221
Q ss_pred CCcEEEEEEeCCC-----CCCCCCceee--------chhhHHHHHHHHHhcc----cCCcEEEEEEecCCCCChhhHHHH
Q 041272 171 STAVRLVAFNLGY-----LPGGDKSVIT--------TSETTKMALEAAERIL----IPGGLISMVVYVGHPGGREELEAV 233 (267)
Q Consensus 171 ~~~~d~ii~~~~~-----lp~~d~~~~~--------~~~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~ 233 (267)
...||.|+.|.+. +......... ......++|+++.+.+ ||||+++.+++.-.+ .+....+
T Consensus 154 ~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~--eENE~vV 231 (283)
T PF01189_consen 154 ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP--EENEEVV 231 (283)
T ss_dssp TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG--GGTHHHH
T ss_pred ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH--HHHHHHH
Confidence 1259999999654 1111000000 1233478999999999 999999888764322 2334456
Q ss_pred HHHHHhCC
Q 041272 234 EAFARSLS 241 (267)
Q Consensus 234 ~~~~~~l~ 241 (267)
+.+++..+
T Consensus 232 ~~fl~~~~ 239 (283)
T PF01189_consen 232 EKFLKRHP 239 (283)
T ss_dssp HHHHHHST
T ss_pred HHHHHhCC
Confidence 67777643
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=77.17 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=81.8
Q ss_pred hhHHHhhhcCCCCE-EEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 84 ANGVWKHVVRKGDT-VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 84 ~~~l~~~~l~~~~~-VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
...+++..+.+..+ |||||||||-.+..+|+.++ ...-.--|.+++...-.++.+...+.+.+..-+.+ .....
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP----~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~l-Dv~~~ 88 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP----HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLAL-DVSAP 88 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC----CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEe-ecCCC
Confidence 33444445665555 99999999999999999974 58888999999987777777766552212222221 11111
Q ss_pred hhhhc---CCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 163 RMEEI---VPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 163 ~l~~~---~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
.+.-. ......||.|++. .++| ..+..+.+++.+.++|++||.|++..+...
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~---------N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCI---------NMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred CCccccccccCCCCcceeeeh---------hHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 11111 0123478888765 2333 234568899999999999999988765443
|
The function of this family is unknown. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.7e-07 Score=73.95 Aligned_cols=125 Identities=21% Similarity=0.213 Sum_probs=83.9
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
..+.++.... ..++++++|+|||+-+|.++..+++.++. +.+|+|+|+.|-. ...+|.++
T Consensus 31 ~KL~el~~k~--~i~~~~~~ViDLGAAPGgWsQva~~~~~~---~~~ivavDi~p~~---------------~~~~V~~i 90 (205)
T COG0293 31 YKLLELNEKF--KLFKPGMVVVDLGAAPGGWSQVAAKKLGA---GGKIVAVDILPMK---------------PIPGVIFL 90 (205)
T ss_pred HHHHHHHHhc--CeecCCCEEEEcCCCCCcHHHHHHHHhCC---CCcEEEEECcccc---------------cCCCceEE
Confidence 3444444444 34788999999999999999999999876 5679999998732 13457777
Q ss_pred ecChhh------hhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 158 NMCHSR------MEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 158 ~~~~~~------l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
++|..+ +...+. ...+|+|++|+..--.....++| .......+++-+..+|+|||.+++-++.+.
T Consensus 91 q~d~~~~~~~~~l~~~l~-~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 91 QGDITDEDTLEKLLEALG-GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred eeeccCccHHHHHHHHcC-CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 665442 222232 22579999996431112222232 123346677888899999999999998654
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=77.12 Aligned_cols=116 Identities=17% Similarity=0.239 Sum_probs=69.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+++..|-|+|||.+.++..+.. ..+|+..|+... ..+|. . .|+...+-++.
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~-------~~~V~SfDLva~-----------------n~~Vt--a---cdia~vPL~~~ 121 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN-------KHKVHSFDLVAP-----------------NPRVT--A---CDIANVPLEDE 121 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S----------EEEEESS-S-----------------STTEE--E---S-TTS-S--TT
T ss_pred CCCEEEEECCCchHHHHHhccc-------CceEEEeeccCC-----------------CCCEE--E---ecCccCcCCCC
Confidence 4567999999999988855432 257999998642 12222 2 34455555677
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEee
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQM 252 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (267)
.+|++|+++.. +.++...+++|+.|+|||||.|.|...... ...++.|.+.+..-+|.....+.
T Consensus 122 svDv~VfcLSL----------MGTn~~~fi~EA~RvLK~~G~L~IAEV~SR------f~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 122 SVDVAVFCLSL----------MGTNWPDFIREANRVLKPGGILKIAEVKSR------FENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp -EEEEEEES-------------SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-------S-HHHHHHHHHCTTEEEEEEE-
T ss_pred ceeEEEEEhhh----------hCCCcHHHHHHHHheeccCcEEEEEEeccc------CcCHHHHHHHHHHCCCeEEeccc
Confidence 99999999633 335667999999999999999999887432 22456777777777888777544
Q ss_pred e
Q 041272 253 L 253 (267)
Q Consensus 253 ~ 253 (267)
.
T Consensus 186 ~ 186 (219)
T PF05148_consen 186 S 186 (219)
T ss_dssp -
T ss_pred C
Confidence 3
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.4e-07 Score=72.28 Aligned_cols=155 Identities=12% Similarity=0.173 Sum_probs=104.3
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+++|.+||=+|..+|....+++..++. +.+++||.|+.+....-.-+++ -.|+--+..|+..-..+..
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~----G~iYaVEfs~R~~reLl~~a~~------R~Ni~PIL~DA~~P~~Y~~ 141 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGE----GRIYAVEFSPRPMRELLDVAEK------RPNIIPILEDARKPEKYRH 141 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCC----CcEEEEEecchhHHHHHHHHHh------CCCceeeecccCCcHHhhh
Confidence 45789999999999999999999999864 8999999999887665555544 2466666666544333221
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhh-HHHHHHHHHhCCCCceEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREE-LEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 248 (267)
-=..+|+++.+. ..+...+-+..++...||+||.++++.-........+ .+....-.+.+....|.+.
T Consensus 142 ~Ve~VDviy~DV-----------AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~ 210 (231)
T COG1889 142 LVEKVDVIYQDV-----------AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEIL 210 (231)
T ss_pred hcccccEEEEec-----------CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceee
Confidence 112589999883 2345556778899999999998887765433322222 2233345566666777777
Q ss_pred EEeeecC--CCCceEEEee
Q 041272 249 KFQMLNR--PLAPVLVFLF 265 (267)
Q Consensus 249 ~~~~~~~--~~~p~~~~~~ 265 (267)
..-.+.. .++-.++...
T Consensus 211 e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 211 EVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred EEeccCCcccceEEEEEee
Confidence 6666555 3555555443
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.1e-07 Score=82.55 Aligned_cols=122 Identities=14% Similarity=0.179 Sum_probs=89.6
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCC----------------------------c-------EEEEEeCChHHH
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSA----------------------------G-------CVYGLDIQSEAL 135 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~----------------------------~-------~v~giD~s~~~i 135 (267)
.-+++..++|--||+|.+.++.|......-|+ + .++|+|+++.++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 34566799999999999999999764210010 1 378999999999
Q ss_pred HHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCC-CCCCCCceeechhhHHHHHHHHHhcccCCcE
Q 041272 136 KSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGY-LPGGDKSVITTSETTKMALEAAERILIPGGL 214 (267)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~-lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~ 214 (267)
+.|+.|+++.| +.+.|+|.+++..++.... ..+|++|+|+|| ..-.+.. ....-+.++.+.+.+.++--+.
T Consensus 268 ~~Ak~NA~~AG---v~d~I~f~~~d~~~l~~~~---~~~gvvI~NPPYGeRlg~~~--~v~~LY~~fg~~lk~~~~~ws~ 339 (381)
T COG0116 268 EGAKANARAAG---VGDLIEFKQADATDLKEPL---EEYGVVISNPPYGERLGSEA--LVAKLYREFGRTLKRLLAGWSR 339 (381)
T ss_pred HHHHHHHHhcC---CCceEEEEEcchhhCCCCC---CcCCEEEeCCCcchhcCChh--hHHHHHHHHHHHHHHHhcCCce
Confidence 99999999998 6888999998887776654 368999999988 2222110 0112456677777788887788
Q ss_pred EEEEEe
Q 041272 215 ISMVVY 220 (267)
Q Consensus 215 l~i~~~ 220 (267)
++++..
T Consensus 340 ~v~tt~ 345 (381)
T COG0116 340 YVFTTS 345 (381)
T ss_pred EEEEcc
Confidence 877664
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-07 Score=89.23 Aligned_cols=119 Identities=16% Similarity=0.161 Sum_probs=80.0
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCC--------------------------------------CCcEEEEEeCChHH
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADES--------------------------------------SAGCVYGLDIQSEA 134 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~--------------------------------------p~~~v~giD~s~~~ 134 (267)
+++..++|.+||+|.+.++.|....... ...+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 5678999999999999999886421000 01379999999999
Q ss_pred HHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHH---HHHHHhcccC
Q 041272 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA---LEAAERILIP 211 (267)
Q Consensus 135 i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~---l~~~~~~Lkp 211 (267)
++.|++|+..++ ....+++.++|..++.... ....+|+|++|+||-..... ..+..++ +.+..+...+
T Consensus 269 v~~A~~N~~~~g---~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~-----~~~l~~lY~~lg~~lk~~~~ 339 (702)
T PRK11783 269 IQAARKNARRAG---VAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGE-----EPALIALYSQLGRRLKQQFG 339 (702)
T ss_pred HHHHHHHHHHcC---CCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCc-----hHHHHHHHHHHHHHHHHhCC
Confidence 999999999988 4567888887776553322 12368999999888332110 1122223 3333444458
Q ss_pred CcEEEEEEe
Q 041272 212 GGLISMVVY 220 (267)
Q Consensus 212 gG~l~i~~~ 220 (267)
|+.+++.+.
T Consensus 340 g~~~~llt~ 348 (702)
T PRK11783 340 GWNAALFSS 348 (702)
T ss_pred CCeEEEEeC
Confidence 888876554
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-07 Score=79.39 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=84.2
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
.+||-||-|.|..+..+.++... .+++.||+++..++.|++.+.........+|++++.+|...+...... +||
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~v----e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~--~fD 151 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPV----ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE--KFD 151 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCc----ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC--cCC
Confidence 59999999999999999998643 799999999999999999987643111248899988777655543332 799
Q ss_pred EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 176 LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
+|+.|...--..... -...++++.+.+.|+++|+++..
T Consensus 152 vIi~D~tdp~gp~~~-----Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 152 VIIVDSTDPVGPAEA-----LFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEEcCCCCCCcccc-----cCCHHHHHHHHHhcCCCcEEEEe
Confidence 999994221000000 11268999999999999999876
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-08 Score=73.51 Aligned_cols=105 Identities=20% Similarity=0.264 Sum_probs=46.9
Q ss_pred EEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEE
Q 041272 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA 178 (267)
Q Consensus 99 LDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii 178 (267)
||+|+..|..+..+++.+... ...+++++|..+. .+.+++.+++.+ ...+++++.++..+...... ..++|+++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~-~~~~~~~vD~~~~-~~~~~~~~~~~~---~~~~~~~~~g~s~~~l~~~~-~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN-GRGKLYSVDPFPG-DEQAQEIIKKAG---LSDRVEFIQGDSPDFLPSLP-DGPIDLIF 74 (106)
T ss_dssp ---------------------------EEEESS-------------GG---G-BTEEEEES-THHHHHHHH-H--EEEEE
T ss_pred Ccccccccccccccccccccc-ccCCEEEEECCCc-ccccchhhhhcC---CCCeEEEEEcCcHHHHHHcC-CCCEEEEE
Confidence 689999999999999877651 1137999999996 444445554433 35689999988775544332 34799999
Q ss_pred EeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 179 FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 179 ~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+ ..|..+.....++.+.+.|+|||++++-+
T Consensus 75 iD----------g~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 75 ID----------GDHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp EE----------S---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred EC----------CCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 99 34556677888999999999999998754
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-07 Score=78.52 Aligned_cols=127 Identities=16% Similarity=0.242 Sum_probs=85.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
...++||||.|.|..|..++..+ .+|++.|.|+.|... +++.| .+++. ..++.+ .+.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f------~~v~aTE~S~~Mr~r----L~~kg-------~~vl~--~~~w~~---~~~~ 151 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF------KEVYATEASPPMRWR----LSKKG-------FTVLD--IDDWQQ---TDFK 151 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc------ceEEeecCCHHHHHH----HHhCC-------CeEEe--hhhhhc---cCCc
Confidence 35689999999999999999986 579999999998544 44433 23332 222322 2357
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec---------C--CC--------CChhhHHHHH
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV---------G--HP--------GGREELEAVE 234 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~---------~--~~--------~~~~~~~~~~ 234 (267)
||+|.+- .++.....+...|+.+++.|+|+|++++.... + +. .+..-.+.+.
T Consensus 152 fDvIscL---------NvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~ 222 (265)
T PF05219_consen 152 FDVISCL---------NVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVS 222 (265)
T ss_pred eEEEeeh---------hhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHH
Confidence 9988654 24444567789999999999999999875421 1 00 0111234556
Q ss_pred HHHHhCCCCceEEEEEe
Q 041272 235 AFARSLSVDDWICCKFQ 251 (267)
Q Consensus 235 ~~~~~l~~~~~~~~~~~ 251 (267)
.+.+-+...+|++.++.
T Consensus 223 ~l~~v~~p~GF~v~~~t 239 (265)
T PF05219_consen 223 SLVNVFEPAGFEVERWT 239 (265)
T ss_pred HHHHHHHhcCCEEEEEe
Confidence 66677788899887643
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.3e-07 Score=84.11 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=78.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCC----CCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-hhhhc-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADES----SAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-RMEEI- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~----p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~- 167 (267)
...+|||.+||+|.+...++.++.... -...++|+|+++.++..|+.++...+ ...+.+...+.. +....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence 345999999999999999988763100 02578999999999999999987654 112233322211 10000
Q ss_pred CCCCCcEEEEEEeCCCCCCCC-C-cee-----------------------------------echhhHHHHH-HHHHhcc
Q 041272 168 VPKSTAVRLVAFNLGYLPGGD-K-SVI-----------------------------------TTSETTKMAL-EAAERIL 209 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d-~-~~~-----------------------------------~~~~~~~~~l-~~~~~~L 209 (267)
......||+|+.|+||..... . ... -.......++ +.+.++|
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL 186 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIA 186 (524)
T ss_pred ccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhc
Confidence 111237999999999964321 0 000 0011222344 6688999
Q ss_pred cCCcEEEEEEecCC
Q 041272 210 IPGGLISMVVYVGH 223 (267)
Q Consensus 210 kpgG~l~i~~~~~~ 223 (267)
++||++.++.+.+.
T Consensus 187 ~~~G~~~~I~P~s~ 200 (524)
T TIGR02987 187 NKNGYVSIISPASW 200 (524)
T ss_pred CCCCEEEEEEChHH
Confidence 99999999887543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=78.97 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=69.2
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
....+.+..+++.+.|||+|.|||.+|..|.+. +++|+++|+++.|+..-+++.+... .....+++.+|.
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~------~kkVvA~E~Dprmvael~krv~gtp---~~~kLqV~~gD~- 116 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA------GKKVVAVEIDPRMVAELEKRVQGTP---KSGKLQVLHGDF- 116 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh------cCeEEEEecCcHHHHHHHHHhcCCC---ccceeeEEeccc-
Confidence 344455667899999999999999999999998 6899999999999999999887754 246778887654
Q ss_pred hhhhcCCCCCcEEEEEEeCCC
Q 041272 163 RMEEIVPKSTAVRLVAFNLGY 183 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~ 183 (267)
.+... -.||.+|+|++|
T Consensus 117 --lK~d~--P~fd~cVsNlPy 133 (315)
T KOG0820|consen 117 --LKTDL--PRFDGCVSNLPY 133 (315)
T ss_pred --ccCCC--cccceeeccCCc
Confidence 22221 258999999887
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.2e-07 Score=77.75 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=80.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE--EecChhhhhhcC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL--FNMCHSRMEEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~ 168 (267)
.+.++..++|+|||+|.-+..|.+.+.......++++||+|.++++.+.+++.... .+.+++ +.++..+....+
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~----~p~l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN----FSHVRCAGLLGTYDDGLAWL 148 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc----CCCeEEEEEEecHHHHHhhc
Confidence 46678899999999999998888766321113679999999999999999998322 355555 676666654433
Q ss_pred CC---CCcEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHh-cccCCcEEEEEE
Q 041272 169 PK---STAVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAER-ILIPGGLISMVV 219 (267)
Q Consensus 169 ~~---~~~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~-~LkpgG~l~i~~ 219 (267)
+. ..... +++.+|. ++-+ .++....+|+++.+ .|+|||.|++-.
T Consensus 149 ~~~~~~~~~r-~~~flGS------siGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 149 KRPENRSRPT-TILWLGS------SIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccccccCCcc-EEEEeCc------cccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 22 11122 2333322 1111 35667799999999 999999998743
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-06 Score=69.46 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=79.2
Q ss_pred cCCCC-EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 92 VRKGD-TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 92 l~~~~-~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
+.... +++|+|+|.|.-++.+|-.. |..+++.+|.+..-+..-+.-....+ ..|+++++...++ ...
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~----p~~~~~LvEs~~KK~~FL~~~~~~L~----L~nv~v~~~R~E~----~~~ 112 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIAR----PDLQVTLVESVGKKVAFLKEVVRELG----LSNVEVINGRAEE----PEY 112 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-----TTSEEEEEESSHHHHHHHHHHHHHHT-----SSEEEEES-HHH----TTT
T ss_pred hccCCceEEecCCCCCChhHHHHHhC----CCCcEEEEeCCchHHHHHHHHHHHhC----CCCEEEEEeeecc----ccc
Confidence 44444 89999999999999999885 45899999999999999999888888 5789999877766 222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...||++++-. ......+++-+..+|++||.+++.-
T Consensus 113 ~~~fd~v~aRA-------------v~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 113 RESFDVVTARA-------------VAPLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp TT-EEEEEEES-------------SSSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCccEEEeeh-------------hcCHHHHHHHHHHhcCCCCEEEEEc
Confidence 45799999873 1223478888899999999986643
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-06 Score=77.42 Aligned_cols=136 Identities=20% Similarity=0.196 Sum_probs=98.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..++|.+|||+.+-+|.-|.++|..++. .+.|++.|.+...++..+.|+.+.| ..+..+...|...+......
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn---~G~I~AnD~n~~r~~~l~~n~~rlG----v~ntiv~n~D~~ef~~~~~~ 310 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKN---TGVIFANDSNENRLKSLKANLHRLG----VTNTIVSNYDGREFPEKEFP 310 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcC---CceEEecccchHHHHHHHHHHHHhC----CCceEEEccCcccccccccC
Confidence 4578999999999999999999998876 6899999999999999999999988 56666666555433322222
Q ss_pred CCcEEEEEEeCCC----CCCCCCceee---------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGY----LPGGDKSVIT---------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~----lp~~d~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
. +||-|+.+.+. +...+..+-. ...-.++.|..+.+++++||+|+.+++.- ..+|.+.+..|+
T Consensus 311 ~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI---~~~ENE~vV~ya 386 (460)
T KOG1122|consen 311 G-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI---TVEENEAVVDYA 386 (460)
T ss_pred c-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec---chhhhHHHHHHH
Confidence 2 79999999755 2222223322 12345789999999999999998887643 334455554443
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=71.89 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=59.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.|++++|+|||.|-++...+.. + ...|+|+|+++++++.+++|+.+.. -++++++.+. .+.....+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~-~----~e~vlGfDIdpeALEIf~rNaeEfE-----vqidlLqcdi---ldle~~~g~ 114 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP-K----NESVLGFDIDPEALEIFTRNAEEFE-----VQIDLLQCDI---LDLELKGGI 114 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC-C----CceEEeeecCHHHHHHHhhchHHhh-----hhhheeeeec---cchhccCCe
Confidence 6889999999999999555532 2 4689999999999999999998854 4567776443 444445578
Q ss_pred EEEEEEeCCC
Q 041272 174 VRLVAFNLGY 183 (267)
Q Consensus 174 ~d~ii~~~~~ 183 (267)
||.++.|+++
T Consensus 115 fDtaviNppF 124 (185)
T KOG3420|consen 115 FDTAVINPPF 124 (185)
T ss_pred EeeEEecCCC
Confidence 9999999754
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.7e-07 Score=78.27 Aligned_cols=79 Identities=20% Similarity=0.136 Sum_probs=63.5
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+.+++.|||||+|.|.+|..|+++ +.+|++||+++.+++..++.... ..|++++++|.-.. ..
T Consensus 26 a~~~~~d~VlEIGpG~GaLT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~---d~ 90 (259)
T COG0030 26 ANISPGDNVLEIGPGLGALTEPLLER------AARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKF---DF 90 (259)
T ss_pred cCCCCCCeEEEECCCCCHHHHHHHhh------cCeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcC---cc
Confidence 34667899999999999999999998 47899999999999999998763 46899998766422 11
Q ss_pred CCC-cEEEEEEeCCC
Q 041272 170 KST-AVRLVAFNLGY 183 (267)
Q Consensus 170 ~~~-~~d~ii~~~~~ 183 (267)
+.. .++.+++|++|
T Consensus 91 ~~l~~~~~vVaNlPY 105 (259)
T COG0030 91 PSLAQPYKVVANLPY 105 (259)
T ss_pred hhhcCCCEEEEcCCC
Confidence 111 47899999888
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.59 E-value=7e-07 Score=72.37 Aligned_cols=113 Identities=22% Similarity=0.256 Sum_probs=65.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh------hhhhhc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH------SRMEEI 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~------~~l~~~ 167 (267)
++.+|||+||++|.++..++++.+. ..+|+|+|+.+.. . ..++..+++|. ..+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~---~~~v~avDl~~~~------~---------~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGP---AGRVVAVDLGPMD------P---------LQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTT---EEEEEEEESSSTG------S----------TTEEBTTGGGEEEEHSHHGGGS
T ss_pred cccEEEEcCCcccceeeeeeecccc---cceEEEEeccccc------c---------ccceeeeecccchhhHHHhhhhh
Confidence 3489999999999999999998633 5899999999861 0 12233332221 223332
Q ss_pred CC-CCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 168 VP-KSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 168 ~~-~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
.. ....+|+|++|...--..+....+ ........+.-+.+.|+|||.+++-.+.+..
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 22 124799999996331111111111 1223345566677889999999888875433
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.5e-07 Score=74.34 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=64.7
Q ss_pred CCEEEEecCCCCh----HHHHHHHhcCCCCC-CcEEEEEeCChHHHHHHHHHHhhcc----c------------------
Q 041272 95 GDTVVDATCGNGY----DTLMMLKMVADESS-AGCVYGLDIQSEALKSTSSLLDKTT----S------------------ 147 (267)
Q Consensus 95 ~~~VLDlGcG~G~----~~~~la~~~~~~~p-~~~v~giD~s~~~i~~a~~~~~~~~----~------------------ 147 (267)
.-+|+-+||+||. +++.+.+..+...+ ..+|+|.|+|+.+++.|++-.=... .
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 3599999999994 34444442221011 3699999999999999986431100 0
Q ss_pred --cccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEE
Q 041272 148 --KAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 148 --~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
+.+..+|.|...+. .+..+....||+|++- .++. ..+...++++.+++.|+|||+|++
T Consensus 112 v~~~lr~~V~F~~~NL---~~~~~~~~~fD~I~CR---------NVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNL---LDPDPPFGRFDLIFCR---------NVLIYFDPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp E-HHHHTTEEEEE--T---T-S------EEEEEE----------SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EChHHcCceEEEeccc---CCCCcccCCccEEEec---------CEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 12234566665333 3322334579999887 2332 567778999999999999999977
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.8e-07 Score=73.49 Aligned_cols=139 Identities=18% Similarity=0.162 Sum_probs=86.6
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
..++||+|+|.|+.|..+...+ ..+|..||..+..++.|++.+.... ....++++. .+.++.++...|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~-----f~~VDlVEp~~~Fl~~a~~~l~~~~----~~v~~~~~~---gLQ~f~P~~~~Y 123 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV-----FDEVDLVEPVEKFLEQAKEYLGKDN----PRVGEFYCV---GLQDFTPEEGKY 123 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC------SEEEEEES-HHHHHHHHHHTCCGG----CCEEEEEES----GGG----TT-E
T ss_pred cceEEecccccchhHHHHHHHh-----cCEeEEeccCHHHHHHHHHHhcccC----CCcceEEec---CHhhccCCCCcE
Confidence 4699999999999998765432 3689999999999999998776522 223445543 334445555689
Q ss_pred EEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEEecCCCCC--h--hh---HHHHHHHHHhCCCCceE
Q 041272 175 RLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVVYVGHPGG--R--EE---LEAVEAFARSLSVDDWI 246 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~--~~---~~~~~~~~~~l~~~~~~ 246 (267)
|+|..... +.| .-.+.-++|+++...|+|+|++++-......+. . ++ .+....|.+.+.+.+++
T Consensus 124 DlIW~QW~--------lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~ 195 (218)
T PF05891_consen 124 DLIWIQWC--------LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLR 195 (218)
T ss_dssp EEEEEES---------GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-E
T ss_pred eEEEehHh--------hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCE
Confidence 99998841 112 234567999999999999999999766443221 0 00 11234455555567888
Q ss_pred EEEEeee
Q 041272 247 CCKFQML 253 (267)
Q Consensus 247 ~~~~~~~ 253 (267)
++..+..
T Consensus 196 ~v~~~~Q 202 (218)
T PF05891_consen 196 LVKEEKQ 202 (218)
T ss_dssp EEEEEE-
T ss_pred EEEeccc
Confidence 8886664
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.6e-07 Score=76.40 Aligned_cols=101 Identities=11% Similarity=0.031 Sum_probs=76.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+...+||=||-|-|..+.++.++ | .+|+.||+++++++.+++.+.........+|++++.. +.+. ...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-----~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~--~~~ 138 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-----D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDL--DIK 138 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-----C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhc--cCC
Confidence 34579999999999999999987 2 4999999999999999997765432233577777642 1111 124
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.||+||.+.. ....+.+.+.+.|+|||+++...
T Consensus 139 ~fDVIIvDs~--------------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 139 KYDLIICLQE--------------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCCEEEEcCC--------------CChHHHHHHHHhcCCCcEEEECC
Confidence 7999999931 11578899999999999997643
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-05 Score=67.82 Aligned_cols=117 Identities=16% Similarity=0.224 Sum_probs=84.6
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
.-+||||.||.|+..+.+....+.. ...|.-.|.|+..|+..++.+++.| +..-++|.++|+.+...+..-+...
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~g---L~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERG---LEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcC---CccceEEEecCCCCHhHhhccCCCC
Confidence 3499999999999998888775430 2589999999999999999999988 3444599998887765543223234
Q ss_pred EEEEEe-C-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 175 RLVAFN-L-GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 175 d~ii~~-~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
++++.. + .++++. .-....++.+.+.+.|||.++.+.-+-|+
T Consensus 211 ~l~iVsGL~ElF~Dn--------~lv~~sl~gl~~al~pgG~lIyTgQPwHP 254 (311)
T PF12147_consen 211 TLAIVSGLYELFPDN--------DLVRRSLAGLARALEPGGYLIYTGQPWHP 254 (311)
T ss_pred CEEEEecchhhCCcH--------HHHHHHHHHHHHHhCCCcEEEEcCCCCCc
Confidence 555443 2 222221 22356788999999999999888755565
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-06 Score=70.67 Aligned_cols=119 Identities=17% Similarity=0.098 Sum_probs=65.9
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-----cccccceEEE
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS-----KAEKGLVKLF 157 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~-----~~~~~~v~~~ 157 (267)
+...+....+.+++..+|||||.|.....+|...+- .+.+|||+.+...+.|+...+.... .....++++.
T Consensus 31 ~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~----~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~ 106 (205)
T PF08123_consen 31 VSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGC----KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI 106 (205)
T ss_dssp HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE
T ss_pred HHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCC----cEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee
Confidence 333344445788999999999999999998877643 5799999999999888765543210 0113567777
Q ss_pred ecChhhhh--hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 158 NMCHSRME--EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 158 ~~~~~~l~--~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
++|..+.. .... .+.|+|+.|- .... +.....|.+....||+|-+++-
T Consensus 107 ~gdfl~~~~~~~~~--s~AdvVf~Nn---------~~F~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 107 HGDFLDPDFVKDIW--SDADVVFVNN---------TCFD-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp CS-TTTHHHHHHHG--HC-SEEEE-----------TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccCccccHhHhhhh--cCCCEEEEec---------cccC-HHHHHHHHHHHhcCCCCCEEEE
Confidence 76654321 1111 1357777772 2222 2334555777778899888753
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.6e-06 Score=65.68 Aligned_cols=115 Identities=21% Similarity=0.207 Sum_probs=77.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-Chh------h
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHS------R 163 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~------~ 163 (267)
.++|+++|||+||.+|.++....++.++ ++.|.|||+-+-.- ..-+.++++ |.. .
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p---~g~v~gVDllh~~p---------------~~Ga~~i~~~dvtdp~~~~k 127 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNP---NGMVLGVDLLHIEP---------------PEGATIIQGNDVTDPETYRK 127 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCC---CceEEEEeeeeccC---------------CCCcccccccccCCHHHHHH
Confidence 3678999999999999999999999864 79999999854211 112233332 111 1
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
+.+.+ ++..+|+|++++..-+.+.+..+|. .+--..++.-+...++|+|.++.-.|.+..
T Consensus 128 i~e~l-p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 128 IFEAL-PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred HHHhC-CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 22223 3568999999986655554443332 233345666677889999999998886544
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=72.90 Aligned_cols=110 Identities=21% Similarity=0.288 Sum_probs=72.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+....|-|+|||-+.++. .. .-+|+.+|+.+. ..+| +. -|+...+.++.
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~------~~kV~SfDL~a~-----------------~~~V--~~---cDm~~vPl~d~ 227 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE------RHKVHSFDLVAV-----------------NERV--IA---CDMRNVPLEDE 227 (325)
T ss_pred cCceEEEecccchhhhhh---cc------ccceeeeeeecC-----------------CCce--ee---ccccCCcCccC
Confidence 345689999999998776 11 257999997431 1222 22 24455556677
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
++|++++++.. +.++...+++++.|+||+||.++|...... ...+..|...+..-+|.+..
T Consensus 228 svDvaV~CLSL----------Mgtn~~df~kEa~RiLk~gG~l~IAEv~SR------f~dv~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 228 SVDVAVFCLSL----------MGTNLADFIKEANRILKPGGLLYIAEVKSR------FSDVKGFVRALTKLGFDVKH 288 (325)
T ss_pred cccEEEeeHhh----------hcccHHHHHHHHHHHhccCceEEEEehhhh------cccHHHHHHHHHHcCCeeee
Confidence 99999998533 335567899999999999999999876321 12233355555555555443
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.8e-05 Score=65.57 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=62.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.+|+++|||||++|.+|..++++ +.+|++||..+ | ...+.. .++|.....+.... .+..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~-l----~~~L~~------~~~V~h~~~d~fr~---~p~~ 268 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGP-M----AQSLMD------TGQVEHLRADGFKF---RPPR 268 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechh-c----CHhhhC------CCCEEEEeccCccc---CCCC
Confidence 468999999999999999999998 57999999654 2 122222 46788776554332 2224
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC--cEEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG--GLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~i~~ 219 (267)
..+|.+++|+. ..+..+.+-+.+.|..| ...+++.
T Consensus 269 ~~vDwvVcDmv-------------e~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 269 KNVDWLVCDMV-------------EKPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred CCCCEEEEecc-------------cCHHHHHHHHHHHHhcCcccEEEEEE
Confidence 57999999942 22234555555566555 3444443
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-06 Score=75.14 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=69.1
Q ss_pred CEEEEecCCCCh----HHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc----cc--------------------
Q 041272 96 DTVVDATCGNGY----DTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT----TS-------------------- 147 (267)
Q Consensus 96 ~~VLDlGcG~G~----~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~----~~-------------------- 147 (267)
-+|+..||+||. ++..+.+..+......+|+|+|+|+.+++.|++-.-.. +.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 599999999994 34444443321001368999999999999998863110 00
Q ss_pred ---cccccceEEEecChhhhhhc-CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 148 ---KAEKGLVKLFNMCHSRMEEI-VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 148 ---~~~~~~v~~~~~~~~~l~~~-~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
+.+...|.|... |+.+. .+....||+|++.-.. +....+...++++++.+.|+|||+|++
T Consensus 197 ~v~~~lr~~V~F~~~---NL~~~~~~~~~~fD~I~cRNvl-------iyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 197 RVRQELANYVDFQQL---NLLAKQWAVPGPFDAIFCRNVM-------IYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred EEChHHHccCEEEcc---cCCCCCCccCCCcceeeHhhHH-------hcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 011234455442 33331 1223478998885211 112356778999999999999998865
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.2e-05 Score=63.87 Aligned_cols=133 Identities=14% Similarity=0.089 Sum_probs=85.5
Q ss_pred EEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEE
Q 041272 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLV 177 (267)
Q Consensus 98 VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~i 177 (267)
|.||||--|++...|++... ..+++++|+++..++.|+++++..+ +..+++++.+|.. +.+.+....|.|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~----~~~~ia~DI~~gpL~~A~~~i~~~~---l~~~i~~rlgdGL---~~l~~~e~~d~i 70 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK----APKAIAVDINPGPLEKAKENIAKYG---LEDRIEVRLGDGL---EVLKPGEDVDTI 70 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS----EEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-SGG---GG--GGG---EE
T ss_pred CceeccchhHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHHcC---CcccEEEEECCcc---cccCCCCCCCEE
Confidence 68999999999999999743 3589999999999999999999988 5788999886642 223232235555
Q ss_pred E-EeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEeeecCC
Q 041272 178 A-FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP 256 (267)
Q Consensus 178 i-~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (267)
+ +.+| .....+++++....++....|++ .+. .....+.+|+... +|.+..-..+..+
T Consensus 71 vIAGMG------------G~lI~~ILe~~~~~~~~~~~lIL-qP~------~~~~~LR~~L~~~---gf~I~~E~lv~e~ 128 (205)
T PF04816_consen 71 VIAGMG------------GELIIEILEAGPEKLSSAKRLIL-QPN------THAYELRRWLYEN---GFEIIDEDLVEEN 128 (205)
T ss_dssp EEEEE-------------HHHHHHHHHHTGGGGTT--EEEE-EES------S-HHHHHHHHHHT---TEEEEEEEEEEET
T ss_pred EEecCC------------HHHHHHHHHhhHHHhccCCeEEE-eCC------CChHHHHHHHHHC---CCEEEEeEEEeEC
Confidence 4 4432 23446778877777766556654 332 2346777888764 5777766665544
Q ss_pred CCceEE
Q 041272 257 LAPVLV 262 (267)
Q Consensus 257 ~~p~~~ 262 (267)
...+.+
T Consensus 129 ~~~YeI 134 (205)
T PF04816_consen 129 GRFYEI 134 (205)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 444333
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-06 Score=67.96 Aligned_cols=127 Identities=19% Similarity=0.149 Sum_probs=76.7
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHH----HHHHHHHhhccccccccceEEEecChh
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAL----KSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i----~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
+....+++|++|+|+-.|.|++|..++..+++ .+.|+++-..+... +..+.+..... ....|++.+....
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp---~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e--~~~aN~e~~~~~~- 114 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGP---KGKVYAYVPAELTKFAKREGPRLNAAARE--PVYANVEVIGKPL- 114 (238)
T ss_pred eEEeccCCCCEEEEEecCCccHhhhhchhcCC---ceeEEEecchhhcccccchhhhhhhhhhh--hhhhhhhhhCCcc-
Confidence 33446899999999999999999999999986 67999885444311 11111110000 0133444432221
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
..+. .....|++..+..|+.-..+. .++....++...+++.|||||++++.+....+
T Consensus 115 --~A~~-~pq~~d~~~~~~~yhdmh~k~--i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 115 --VALG-APQKLDLVPTAQNYHDMHNKN--IHPATAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred --cccC-CCCcccccccchhhhhhhccc--cCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 2222 223566666553331111111 13556678999999999999999998876555
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-05 Score=66.31 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=77.0
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc-
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA- 173 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~- 173 (267)
+.+++|||+|.|--++.+|-.. |+.+|+-+|....-+..-++-..+.+ ..|++++++..+++.... .
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~----p~~~vtLles~~Kk~~FL~~~~~eL~----L~nv~i~~~RaE~~~~~~----~~ 135 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF----PDLKVTLLESLGKKIAFLREVKKELG----LENVEIVHGRAEEFGQEK----KQ 135 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc----cCCcEEEEccCchHHHHHHHHHHHhC----CCCeEEehhhHhhccccc----cc
Confidence 5899999999999999999654 46889999999999999988888877 688999987766654322 2
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
||+|.+-. ......+.+-+..++|+||.++..
T Consensus 136 ~D~vtsRA-------------va~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 136 YDVVTSRA-------------VASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred CcEEEeeh-------------ccchHHHHHHHHHhcccCCcchhh
Confidence 89988762 122245667778899999987543
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.9e-06 Score=62.80 Aligned_cols=94 Identities=11% Similarity=-0.011 Sum_probs=59.0
Q ss_pred CCCEEEEecCCCCh-HHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGNGY-DTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~-~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+.+|||+|||+|. .+..|++. +.+|+++|+++.+++.|+++. +.++.+|..+-...+ ..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~~~-----------~~~v~dDlf~p~~~~--y~ 76 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKKLG-----------LNAFVDDLFNPNLEI--YK 76 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhC-----------CeEEECcCCCCCHHH--Hh
Confidence 45799999999996 88888865 479999999999999887742 344544432211111 12
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+|+|.+--+ +++....+-++.+ +-|.-++|...
T Consensus 77 ~a~liysirp------------p~el~~~~~~la~--~~~~~~~i~~l 110 (134)
T PRK04148 77 NAKLIYSIRP------------PRDLQPFILELAK--KINVPLIIKPL 110 (134)
T ss_pred cCCEEEEeCC------------CHHHHHHHHHHHH--HcCCCEEEEcC
Confidence 5778777621 2333344444544 34455666554
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.6e-05 Score=66.16 Aligned_cols=94 Identities=21% Similarity=0.172 Sum_probs=70.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++..|||+|+|+|.+|..|++. +.+|+++|+++.+++..+++... ..+++++.+|.-++.....-
T Consensus 27 ~~~~~~~VlEiGpG~G~lT~~L~~~------~~~v~~vE~d~~~~~~L~~~~~~------~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 27 DLSEGDTVLEIGPGPGALTRELLKR------GKRVIAVEIDPDLAKHLKERFAS------NPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp TCGTTSEEEEESSTTSCCHHHHHHH------SSEEEEEESSHHHHHHHHHHCTT------CSSEEEEES-TTTSCGGGHC
T ss_pred CCCCCCEEEEeCCCCccchhhHhcc------cCcceeecCcHhHHHHHHHHhhh------cccceeeecchhccccHHhh
Confidence 4558899999999999999999998 36999999999999999987763 46899998877655443211
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhc
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~ 208 (267)
......+++|++| .....++.++...
T Consensus 95 ~~~~~~vv~NlPy------------~is~~il~~ll~~ 120 (262)
T PF00398_consen 95 KNQPLLVVGNLPY------------NISSPILRKLLEL 120 (262)
T ss_dssp SSSEEEEEEEETG------------TGHHHHHHHHHHH
T ss_pred cCCceEEEEEecc------------cchHHHHHHHhhc
Confidence 2356789999765 1124566666663
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.2e-06 Score=68.39 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=68.0
Q ss_pred hcCCCC--EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc----c-cccceEEEecChhh
Q 041272 91 VVRKGD--TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK----A-EKGLVKLFNMCHSR 163 (267)
Q Consensus 91 ~l~~~~--~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~----~-~~~~v~~~~~~~~~ 163 (267)
.+++|. +|||+.+|+|..+..++.+ +++|+++|.++.+....+++++....+ . +..++++++++..+
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 467777 9999999999999999988 578999999999999999998874110 0 12578888888776
Q ss_pred hhhcCCCCCcEEEEEEeCCCC
Q 041272 164 MEEIVPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~l 184 (267)
+.....+ .||+|++|++|-
T Consensus 157 ~L~~~~~--~fDVVYlDPMfp 175 (250)
T PRK10742 157 ALTDITP--RPQVVYLDPMFP 175 (250)
T ss_pred HHhhCCC--CCcEEEECCCCC
Confidence 6554332 699999998773
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-05 Score=64.34 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=82.7
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
-.+|.+||++|-|-|.....+-++-+ .+=+-||..++.++..+...-. ...||..+.+..+|....++.+
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p-----~~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~~L~d~ 168 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPP-----DEHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLNTLPDK 168 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCC-----cceEEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhcccccc
Confidence 36789999999999998887776532 3456799999999888876644 2478888888777776666544
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
.||-|..+ ......++...+.+.+.++|||+|++-+
T Consensus 169 -~FDGI~yD---------Ty~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 169 -HFDGIYYD---------TYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred -CcceeEee---------chhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 59999998 3334567888999999999999999843
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.6e-06 Score=69.68 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=65.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC-C
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS-T 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~-~ 172 (267)
....|+|..||.|..+...|.+ +..|++||++|.-|..|+.|++-.| ...+|+|+++|..++...+..+ .
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~------~~~VisIdiDPikIa~AkhNaeiYG---I~~rItFI~GD~ld~~~~lq~~K~ 164 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ------GPYVIAIDIDPVKIACARHNAEVYG---VPDRITFICGDFLDLASKLKADKI 164 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh------CCeEEEEeccHHHHHHHhccceeec---CCceeEEEechHHHHHHHHhhhhh
Confidence 4568999999999999999987 3689999999999999999999999 6779999999998887754322 2
Q ss_pred cEEEEEEeCC
Q 041272 173 AVRLVAFNLG 182 (267)
Q Consensus 173 ~~d~ii~~~~ 182 (267)
.+|.+...++
T Consensus 165 ~~~~vf~spp 174 (263)
T KOG2730|consen 165 KYDCVFLSPP 174 (263)
T ss_pred eeeeeecCCC
Confidence 3556655543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.1e-05 Score=66.63 Aligned_cols=118 Identities=17% Similarity=0.145 Sum_probs=85.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHH--Hhhccc-cccccceEEEecChhhhhhcC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSL--LDKTTS-KAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~--~~~~~~-~~~~~~v~~~~~~~~~l~~~~ 168 (267)
++...+||-+|-|.|-...++.+.-+ -.+++-+|.+|.|++.++++ +++.+. .....+++++.+|+.++...-
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~----~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a 362 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQ----VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA 362 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCC----cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh
Confidence 34556999999999999999987622 36999999999999999954 333222 234678999998888776654
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+ .||++|.|+ |+++....- .--..++..-+.+.|+++|++++..
T Consensus 363 ~~--~fD~vIVDl---~DP~tps~~-rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 363 AD--MFDVVIVDL---PDPSTPSIG-RLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cc--cccEEEEeC---CCCCCcchh-hhhhHHHHHHHHHhcCcCceEEEec
Confidence 33 799999995 333221111 1112577888899999999998754
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.3e-06 Score=64.33 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=47.2
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC 160 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~ 160 (267)
+|||+|||.|.++..+++..+ ..+|+++|.++.+.+.++++++.++ ..++.+++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~----~~~v~~~E~~~~~~~~l~~~~~~n~----~~~v~~~~~a 56 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA----EGRVIAFEPLPDAYEILEENVKLNN----LPNVVLLNAA 56 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC----CCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEEee
Confidence 489999999999999998743 4699999999999999999998876 3567776543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=65.03 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=74.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.|.+|||+|+|+|..++..++.. ...|+..|+.+..+...+-|++.|+ ..+.++..+ + ..++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-----A~~v~a~d~~P~~~~ai~lNa~ang-----v~i~~~~~d---~---~g~~~~ 142 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-----AAEVVAADIDPWLEQAIRLNAAANG-----VSILFTHAD---L---IGSPPA 142 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-----hHHHHhcCCChHHHHHhhcchhhcc-----ceeEEeecc---c---cCCCcc
Confidence 68899999999999998888762 4789999999999999999999887 456665422 2 223457
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+|+++.. .+....+...+.+. +.+.|+..|..+++.-++
T Consensus 143 ~Dl~Lag---------Dlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 143 FDLLLAG---------DLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred eeEEEee---------ceecCchHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 9988766 34444555567777 666677667666554433
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.3e-06 Score=74.12 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=84.9
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...+.++..++|+|||.|.....++..- ..+++|+|.++..+..+.......+ +..+..++ ..++...+
T Consensus 105 ~~~~~~~~~~~~~~~g~~~~~~~i~~f~-----~~~~~Gl~~n~~e~~~~~~~~~~~~---l~~k~~~~---~~~~~~~~ 173 (364)
T KOG1269|consen 105 RESCFPGSKVLDVGTGVGGPSRYIAVFK-----KAGVVGLDNNAYEAFRANELAKKAY---LDNKCNFV---VADFGKMP 173 (364)
T ss_pred hhcCcccccccccCcCcCchhHHHHHhc-----cCCccCCCcCHHHHHHHHHHHHHHH---hhhhccee---hhhhhcCC
Confidence 3456788899999999999999999863 4789999999999988888776655 22222332 34555555
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.++..||.+.+. ....+.++...+++++++++||||.+....+
T Consensus 174 fedn~fd~v~~l---------d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 174 FEDNTFDGVRFL---------EVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred CCccccCcEEEE---------eecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 666788888766 3445567778999999999999999976544
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.9e-05 Score=65.95 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=66.1
Q ss_pred CEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHh-hccccccccceEEEecChhhhhhcCCCCCc
Q 041272 96 DTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD-KTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 96 ~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~-~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+|+=||||+ -..++.+++..+. +..|+++|+++++++.+++-.+ ..+ +..+++|+.++..+....+ ..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~---~~~v~~iD~d~~A~~~a~~lv~~~~~---L~~~m~f~~~d~~~~~~dl---~~ 192 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGP---GARVHNIDIDPEANELARRLVASDLG---LSKRMSFITADVLDVTYDL---KE 192 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT-----EEEEEESSHHHHHHHHHHHH---H---H-SSEEEEES-GGGG-GG------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCC---CCeEEEEeCCHHHHHHHHHHHhhccc---ccCCeEEEecchhcccccc---cc
Confidence 4999999998 5555777766543 5789999999999999998877 334 4678999988776654322 25
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|+...- +-...+.+.++++++.+.++||..+++-..
T Consensus 193 ~DvV~lAal--------Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 193 YDVVFLAAL--------VGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -SEEEE-TT---------S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred CCEEEEhhh--------cccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 888887731 111234678999999999999999877643
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=62.39 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=44.9
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~ 146 (267)
.+..+|+|+|||.|+++..++..++...++.+|+|||.++..++.|+++.++.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 467799999999999999999944221136899999999999999999988754
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=68.57 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=51.6
Q ss_pred CCEEEEecCCCC-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-cccccccceEEEecC-hhhhhh-cCCC
Q 041272 95 GDTVVDATCGNG-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-TSKAEKGLVKLFNMC-HSRMEE-IVPK 170 (267)
Q Consensus 95 ~~~VLDlGcG~G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~~-~~~l~~-~~~~ 170 (267)
.-++||||||.. ...+..++.. +.+++|.|+++..++.|+++++.+ + +..+|+++... ...+.. ....
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-----~W~fvaTdID~~sl~~A~~nv~~N~~---L~~~I~l~~~~~~~~i~~~i~~~ 174 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-----GWSFVATDIDPKSLESARENVERNPN---LESRIELRKQKNPDNIFDGIIQP 174 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHHT-T----TTTEEEEE--ST-SSTTTSTT-
T ss_pred ceEeecCCccHHHHHHHHhhhhc-----CCeEEEecCCHHHHHHHHHHHHhccc---cccceEEEEcCCccccchhhhcc
Confidence 458999999995 5566666654 489999999999999999999998 6 57788886532 223333 3334
Q ss_pred CCcEEEEEEeCCCCCC
Q 041272 171 STAVRLVAFNLGYLPG 186 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~ 186 (267)
+..||+.++|+++.-.
T Consensus 175 ~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 175 NERFDFTMCNPPFYSS 190 (299)
T ss_dssp -S-EEEEEE-----SS
T ss_pred cceeeEEecCCccccC
Confidence 4589999999877443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.2e-05 Score=57.61 Aligned_cols=106 Identities=23% Similarity=0.301 Sum_probs=65.8
Q ss_pred EEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC-CcEEE
Q 041272 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS-TAVRL 176 (267)
Q Consensus 98 VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~-~~~d~ 176 (267)
++|+|||+|..+ .++..... ...++|+|+++.+++.++..... . ....+.+...+.... ...... ..+|+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~-~~~~~~~~~~d~ 122 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGR---GAYVVGVDLSPEMLALARARAEG-A---GLGLVDFVVADALGG-VLPFEDSASFDL 122 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCC---CceEEEEeCCHHHHHHHHhhhhh-c---CCCceEEEEeccccC-CCCCCCCCceeE
Confidence 999999999987 44444321 14899999999999986655433 2 011145554433321 011112 36888
Q ss_pred EEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 177 VAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 177 ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+.... ..+... ....+.++.+.|+|+|.+++.....
T Consensus 123 ~~~~~---------~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 123 VISLL---------VLHLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred Eeeee---------ehhcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 83331 111111 5689999999999999998877643
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.5e-05 Score=65.48 Aligned_cols=121 Identities=15% Similarity=0.123 Sum_probs=71.3
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
..+|||+|||+|..+..+.+..+. -.+++++|.|+.|++.++.-++... .............+.... ...
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~---~~~~~~vd~s~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~----~~~ 103 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPS---LKEYTCVDRSPEMLELAKRLLRAGP---NNRNAEWRRVLYRDFLPF----PPD 103 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcC---ceeeeeecCCHHHHHHHHHHHhccc---ccccchhhhhhhcccccC----CCC
Confidence 459999999999877777666553 4689999999999999998776532 011111111000011111 123
Q ss_pred EEEEEeC--CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 175 RLVAFNL--GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 175 d~ii~~~--~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
|+|++.. ..++. ....++++++.+.+.+ .|+++.. |.+.+.+......+++
T Consensus 104 DLvi~s~~L~EL~~---------~~r~~lv~~LW~~~~~--~LVlVEp-Gt~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 104 DLVIASYVLNELPS---------AARAELVRSLWNKTAP--VLVLVEP-GTPAGFRRIAEARDQL 156 (274)
T ss_pred cEEEEehhhhcCCc---------hHHHHHHHHHHHhccC--cEEEEcC-CChHHHHHHHHHHHHH
Confidence 8887762 22222 3446778888777766 5555444 5555555544455444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.3e-05 Score=64.08 Aligned_cols=115 Identities=11% Similarity=0.173 Sum_probs=78.0
Q ss_pred HhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHH----HHHHHHHHhhccccccccceEEEecChhh
Q 041272 88 WKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA----LKSTSSLLDKTTSKAEKGLVKLFNMCHSR 163 (267)
Q Consensus 88 ~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~----i~~a~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (267)
....++||.+||=+|.++|+.....+..+++ .+-||+||.|+.. +..|++ -.|+--+..|+..
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGp---eG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArh 216 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGP---EGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARH 216 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCC---CceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCC
Confidence 3456889999999999999999999999986 7899999999864 444444 2455444434333
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCC
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGG 226 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 226 (267)
-.++-..-.-+|+|+++. + .++..+.+.-++.-.||+||-++++.-..+..+
T Consensus 217 P~KYRmlVgmVDvIFaDv---a--------qpdq~RivaLNA~~FLk~gGhfvisikancids 268 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADV---A--------QPDQARIVALNAQYFLKNGGHFVISIKANCIDS 268 (317)
T ss_pred chheeeeeeeEEEEeccC---C--------CchhhhhhhhhhhhhhccCCeEEEEEecccccc
Confidence 222211112477887773 1 233334555677889999999999876554433
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00017 Score=59.99 Aligned_cols=102 Identities=21% Similarity=0.205 Sum_probs=69.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-ChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~~~ 171 (267)
.+|..+||+|+-||.+|..+.++ +..+|+|+|..-..+.+--++ ..++..+.. +...+.......
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~-----gAk~VyavDVG~~Ql~~kLR~---------d~rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR-----GAKHVYAVDVGYGQLHWKLRN---------DPRVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc-----CCcEEEEEEccCCccCHhHhc---------CCcEEEEecCChhhCCHHHccc
Confidence 47889999999999999999987 247999999988776654332 345544332 222222211111
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..|+++++..+++- ..+|..+..+++|+|.++...-+
T Consensus 144 -~~d~~v~DvSFISL------------~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 144 -KPDLIVIDVSFISL------------KLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred -CCCeEEEEeehhhH------------HHHHHHHHHhcCCCceEEEEecc
Confidence 57888888644332 47888899999999988776543
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.4e-06 Score=65.47 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=72.8
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
.+.+.|+|+|+|.++...|+. ..+|++|+.+|...+.|++|+.-.+ ..|++++.+|+.+.. .. ..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~------A~rViAiE~dPk~a~~a~eN~~v~g----~~n~evv~gDA~~y~---fe--~A 97 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA------AERVIAIEKDPKRARLAEENLHVPG----DVNWEVVVGDARDYD---FE--NA 97 (252)
T ss_pred hhceeeccCCcchHHHHHHhh------hceEEEEecCcHHHHHhhhcCCCCC----CcceEEEeccccccc---cc--cc
Confidence 379999999999999999987 3689999999999999999997777 789999988774432 11 35
Q ss_pred EEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEE
Q 041272 175 RLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
|++++-+ +++ ..+..-.++..+.+.||-.+.++
T Consensus 98 DvvicEm---------lDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 98 DVVICEM---------LDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ceeHHHH---------hhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 7776653 111 11222346677777888888774
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.9e-05 Score=65.17 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=69.6
Q ss_pred CCEEEEecCCCC----hHHHHHHHhcCC-CCCCcEEEEEeCChHHHHHHHHHHhh-----ccc-----------------
Q 041272 95 GDTVVDATCGNG----YDTLMMLKMVAD-ESSAGCVYGLDIQSEALKSTSSLLDK-----TTS----------------- 147 (267)
Q Consensus 95 ~~~VLDlGcG~G----~~~~~la~~~~~-~~p~~~v~giD~s~~~i~~a~~~~~~-----~~~----------------- 147 (267)
.-+|+-+||+|| .++..+.+..+. .....+|+|.|+|..+++.|++-.-. .+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 458999999999 455555565431 00147899999999999999864321 010
Q ss_pred ---cccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEE
Q 041272 148 ---KAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 148 ---~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
+.+...|.|.. -++....+....||+|++- .++. ..+...++++..+..|+|||+|++
T Consensus 177 ~v~~~ir~~V~F~~---~NLl~~~~~~~~fD~IfCR---------NVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRR---HNLLDDSPFLGKFDLIFCR---------NVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEee---cCCCCCccccCCCCEEEEc---------ceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 01112233322 1222211123368888775 2332 567788999999999999999977
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.6e-05 Score=72.64 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=63.0
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEE---eCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGL---DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~gi---D~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+||+|||+|.++..|.++ +..+..+ |..+..++.|-++ | +..-+.++ + -..++.++..
T Consensus 120 ~~LDvGcG~aSF~a~l~~r------~V~t~s~a~~d~~~~qvqfaleR----G---vpa~~~~~-~----s~rLPfp~~~ 181 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER------NVTTMSFAPNDEHEAQVQFALER----G---VPAMIGVL-G----SQRLPFPSNA 181 (506)
T ss_pred EEEeccceeehhHHHHhhC------CceEEEcccccCCchhhhhhhhc----C---cchhhhhh-c----cccccCCccc
Confidence 7999999999999999987 3444443 4444455555443 2 11111110 0 0234455668
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
||++-+.-..++.... -..+|-++-|+|+|||+++++..+..
T Consensus 182 fDmvHcsrc~i~W~~~--------~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 182 FDMVHCSRCLIPWHPN--------DGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hhhhhcccccccchhc--------ccceeehhhhhhccCceEEecCCccc
Confidence 9988766444443322 13578899999999999998877544
|
; GO: 0008168 methyltransferase activity |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.8e-05 Score=67.32 Aligned_cols=100 Identities=23% Similarity=0.307 Sum_probs=73.5
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
...+..++|+|||.|-.+ +. +|...++|.|++...+.-|++. +.... ...|....+..+
T Consensus 43 ~~~gsv~~d~gCGngky~-------~~-~p~~~~ig~D~c~~l~~~ak~~----------~~~~~---~~ad~l~~p~~~ 101 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYL-------GV-NPLCLIIGCDLCTGLLGGAKRS----------GGDNV---CRADALKLPFRE 101 (293)
T ss_pred cCCcceeeecccCCcccC-------cC-CCcceeeecchhhhhccccccC----------CCcee---ehhhhhcCCCCC
Confidence 345889999999999443 22 3567899999999998888762 11111 135666777777
Q ss_pred CcEEEEEEeCCCCCCCCCceeec---hhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT---SETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..||.+++- .++|+ ......+++++.+.|+|||..++.++.
T Consensus 102 ~s~d~~lsi---------avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 102 ESFDAALSI---------AVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred Cccccchhh---------hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 789988876 34543 345688999999999999999888874
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.5e-06 Score=67.15 Aligned_cols=104 Identities=15% Similarity=0.088 Sum_probs=75.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
....++|||||-|.+...+.... -.+++-+|-|-.|++.++.. +..+ -.+....+|.+.+ ...+.+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-----vekli~~DtS~~M~~s~~~~-qdp~-----i~~~~~v~DEE~L---df~ens 137 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-----VEKLIMMDTSYDMIKSCRDA-QDPS-----IETSYFVGDEEFL---DFKENS 137 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-----hhheeeeecchHHHHHhhcc-CCCc-----eEEEEEecchhcc---cccccc
Confidence 45689999999999998887652 25899999999999998763 2221 2233344444333 344568
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|++++.+ ..|+..+.+..+.++...|||+|.++-+.+
T Consensus 138 ~DLiisSl---------slHW~NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 138 VDLIISSL---------SLHWTNDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred hhhhhhhh---------hhhhhccCchHHHHHHHhcCCCccchhHHh
Confidence 99999985 355666667889999999999999976655
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00028 Score=62.28 Aligned_cols=137 Identities=17% Similarity=0.149 Sum_probs=87.5
Q ss_pred HHHHhhHH--HhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 80 ITIAANGV--WKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 80 ~~~~~~~l--~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
..+.+.++ +...++||++|||++.-+|.-++.|.+.+-..-..+.|++=|+++.-+..-+..++... ..++.+.
T Consensus 139 rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~----~~~~~v~ 214 (375)
T KOG2198|consen 139 RQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP----SPNLLVT 214 (375)
T ss_pred hhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC----Ccceeee
Confidence 33344444 44567899999999999999998888865320002489999999998888888775543 2333333
Q ss_pred ecChhhhhhcC------CCCCcEEEEEEeCCCCCCCCCceee-----------------chhhHHHHHHHHHhcccCCcE
Q 041272 158 NMCHSRMEEIV------PKSTAVRLVAFNLGYLPGGDKSVIT-----------------TSETTKMALEAAERILIPGGL 214 (267)
Q Consensus 158 ~~~~~~l~~~~------~~~~~~d~ii~~~~~lp~~d~~~~~-----------------~~~~~~~~l~~~~~~LkpgG~ 214 (267)
..+........ .+...||-|+.|.+.-- +..+. .+.-...++.+..++||+||.
T Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~---Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~ 291 (375)
T KOG2198|consen 215 NHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSG---DGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGR 291 (375)
T ss_pred cccceeccccccccCchhhhhhcceeEEecccCC---CcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCE
Confidence 33322222221 12347999999854421 12221 112335788999999999999
Q ss_pred EEEEEecCC
Q 041272 215 ISMVVYVGH 223 (267)
Q Consensus 215 l~i~~~~~~ 223 (267)
++.+++...
T Consensus 292 lVYSTCSLn 300 (375)
T KOG2198|consen 292 LVYSTCSLN 300 (375)
T ss_pred EEEeccCCC
Confidence 988877443
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00011 Score=66.36 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=77.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccccc-ceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG-LVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~-~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+-+|||.=+|+|.=++..+..++. ..+|+.-|+|+++++..++|++.|+ ... ++++.+.|+..+.. ....
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~---~~~v~~NDi~~~a~~~i~~N~~~N~---~~~~~~~v~~~DAn~ll~--~~~~ 120 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAG---VDKVTANDISPEAVELIKRNLELNG---LEDERIEVSNMDANVLLY--SRQE 120 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SS---ECEEEEEES-HHHHHHHHHHHHHCT----SGCCEEEEES-HHHHHC--HSTT
T ss_pred CCceEEeccccccHHHHHHHHHcCC---CCEEEEecCCHHHHHHHHHhHhhcc---ccCceEEEehhhHHHHhh--hccc
Confidence 4459999999999999999998643 4689999999999999999999988 344 57887777665543 1234
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|=.|+ ++ .+..+++.+.+.++.||+|.++.-
T Consensus 121 ~fD~IDlDP----fG---------Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 121 RFDVIDLDP----FG---------SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -EEEEEE------SS-----------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred cCCEEEeCC----CC---------CccHhHHHHHHHhhcCCEEEEecc
Confidence 799998883 33 224799999999999999999864
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00018 Score=61.71 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=67.8
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc---cc------------------------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT---TS------------------------ 147 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~---~~------------------------ 147 (267)
+.+||--|||-|+++..+|.+ +..+.|.|.|--|+-..+--+... +.
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~------G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~ 130 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL------GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR 130 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc------cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence 469999999999999999998 579999999999976555443320 00
Q ss_pred -c--------ccccceEEEecChhhhhhcCCC---CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 148 -K--------AEKGLVKLFNMCHSRMEEIVPK---STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 148 -~--------~~~~~v~~~~~~~~~l~~~~~~---~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
+ ....++....+| +.+...+ ...+|.|+..+ ++...++.-++++.+.++|||||..
T Consensus 131 iPDv~p~~~~~~~~~~sm~aGD---F~e~y~~~~~~~~~d~VvT~F---------FIDTA~Ni~~Yi~tI~~lLkpgG~W 198 (270)
T PF07942_consen 131 IPDVDPSSELPSPSNLSMCAGD---FLEVYGPDENKGSFDVVVTCF---------FIDTAENIIEYIETIEHLLKPGGYW 198 (270)
T ss_pred eCCcCcccccCCCCceeEecCc---cEEecCCcccCCcccEEEEEE---------EeechHHHHHHHHHHHHHhccCCEE
Confidence 0 001122222222 2222222 24677776662 4445677889999999999999944
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=63.49 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=77.6
Q ss_pred HhhHHHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec--
Q 041272 83 AANGVWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-- 159 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-- 159 (267)
-.|......++.|.+||=+|+|+ |..+...|+.+|. .+|+.+|+++..++.|++ +.. ..+.....
T Consensus 158 ~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA----~~VVi~d~~~~Rle~Ak~-~Ga-------~~~~~~~~~~ 225 (354)
T KOG0024|consen 158 GVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGA----SDVVITDLVANRLELAKK-FGA-------TVTDPSSHKS 225 (354)
T ss_pred hhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCC----CcEEEeecCHHHHHHHHH-hCC-------eEEeeccccc
Confidence 34555556788999999999999 9999999999875 899999999999999998 432 11111111
Q ss_pred ChhhhhhcC---CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 160 CHSRMEEIV---PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 160 ~~~~l~~~~---~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
...++.+.. .....+|+.+...+. +..++.+...+++||.++++.+..
T Consensus 226 ~~~~~~~~v~~~~g~~~~d~~~dCsG~---------------~~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 226 SPQELAELVEKALGKKQPDVTFDCSGA---------------EVTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred cHHHHHHHHHhhccccCCCeEEEccCc---------------hHHHHHHHHHhccCCEEEEeccCC
Confidence 112222211 111236777766332 467788889999999987777633
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00081 Score=62.92 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=85.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC---
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP--- 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~--- 169 (267)
.+..+|+|..||+|.+....++.++...-...++|.|+++.....|+.|+--++. ...+....++. +.....
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi---~~~~~i~~~dt--l~~~~~~~~ 259 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI---EGDANIRHGDT--LSNPKHDDK 259 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC---Ccccccccccc--ccCCccccc
Confidence 4677999999999999999998875311026799999999999999999988772 11233333222 222111
Q ss_pred -CCCcEEEEEEeCCCC-CCCCCce---------------eechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 170 -KSTAVRLVAFNLGYL-PGGDKSV---------------ITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 170 -~~~~~d~ii~~~~~l-p~~d~~~---------------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
....||+|++|+++- -.+.... .........+++.+...|+|||+..|+.+.+.
T Consensus 260 ~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gv 330 (489)
T COG0286 260 DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGV 330 (489)
T ss_pred CCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCc
Confidence 235799999999883 3332211 01112237899999999999998888777554
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=59.58 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=73.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC--
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP-- 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-- 169 (267)
++| +.|+|+|.-.|..++.+|..+..-.+.++|+|||++-...... ..+.+. +..++++++++..+......
T Consensus 31 ~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp---~~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 31 LKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHP---MSPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp H---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-------TTEEEEES-SSSTHHHHTSG
T ss_pred hCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcc---ccCceEEEECCCCCHHHHHHHH
Confidence 444 5999999999999988876442101258999999965443222 122222 34799999998776544321
Q ss_pred ---CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec-----CC-------CCChhhHHHHH
Q 041272 170 ---KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV-----GH-------PGGREELEAVE 234 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~-----~~-------~~~~~~~~~~~ 234 (267)
......+|+.| ..|......+.|+....++++|+++++.+.. .. ..+.....++.
T Consensus 105 ~~~~~~~~vlVilD----------s~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~ 174 (206)
T PF04989_consen 105 ELASPPHPVLVILD----------SSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVK 174 (206)
T ss_dssp SS----SSEEEEES----------S----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHH
T ss_pred HhhccCCceEEEEC----------CCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHH
Confidence 12345677777 3444555667888889999999999875421 00 11223467889
Q ss_pred HHHHhCCCCceEEE
Q 041272 235 AFARSLSVDDWICC 248 (267)
Q Consensus 235 ~~~~~l~~~~~~~~ 248 (267)
+|+...+. |.+-
T Consensus 175 ~fL~~~~~--f~iD 186 (206)
T PF04989_consen 175 EFLAEHPD--FEID 186 (206)
T ss_dssp HHHHTTTT--EEEE
T ss_pred HHHHHCCC--cEec
Confidence 99998764 6643
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0002 Score=63.24 Aligned_cols=101 Identities=23% Similarity=0.242 Sum_probs=73.1
Q ss_pred hhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc
Q 041272 89 KHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 167 (267)
...++||++|+=+|+|. |.++..+|+.+ +++|+++|.+++-.+.|++--. -.++.....+..+.
T Consensus 161 ~~~~~pG~~V~I~G~GGlGh~avQ~Aka~-----ga~Via~~~~~~K~e~a~~lGA----------d~~i~~~~~~~~~~ 225 (339)
T COG1064 161 KANVKPGKWVAVVGAGGLGHMAVQYAKAM-----GAEVIAITRSEEKLELAKKLGA----------DHVINSSDSDALEA 225 (339)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEeCChHHHHHHHHhCC----------cEEEEcCCchhhHH
Confidence 34578999999999985 78889999976 4799999999999999988422 22333222222222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
... .+|+++...+ ...+....+.|++||.++++-.+.
T Consensus 226 ~~~--~~d~ii~tv~----------------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 226 VKE--IADAIIDTVG----------------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred hHh--hCcEEEECCC----------------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 221 2888887732 367888999999999999987763
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0013 Score=54.02 Aligned_cols=134 Identities=15% Similarity=0.160 Sum_probs=70.4
Q ss_pred HHHHhhHHHhhhcC-CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-----------
Q 041272 80 ITIAANGVWKHVVR-KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS----------- 147 (267)
Q Consensus 80 ~~~~~~~l~~~~l~-~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~----------- 147 (267)
..++.+..+..... ..-++.|-+||+|++.-.+.-..+. --..|+|-|+++++++.|++|+.-...
T Consensus 36 AsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~--~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~ 113 (246)
T PF11599_consen 36 ASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRR--RLRRVYASDIDEDALELARKNLSLLTPEGLEARREELR 113 (246)
T ss_dssp HHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGG--GEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhH--HHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHH
Confidence 33444444332223 3348999999999999888765443 024799999999999999999873110
Q ss_pred ------------------cc---------cccceEEEecChhhhhh--cCCCCCcEEEEEEeCCC--CCCCCCceeechh
Q 041272 148 ------------------KA---------EKGLVKLFNMCHSRMEE--IVPKSTAVRLVAFNLGY--LPGGDKSVITTSE 196 (267)
Q Consensus 148 ------------------~~---------~~~~v~~~~~~~~~l~~--~~~~~~~~d~ii~~~~~--lp~~d~~~~~~~~ 196 (267)
+. -.......+.|..+... ........|+|+.+++| +-.|... ....
T Consensus 114 ~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~--~~~~ 191 (246)
T PF11599_consen 114 ELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGE--GSGG 191 (246)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS-----HH
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCC--CCCC
Confidence 00 01112233333332111 11223357999999877 3333221 1122
Q ss_pred hHHHHHHHHHhcccCCcEEEE
Q 041272 197 TTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 197 ~~~~~l~~~~~~LkpgG~l~i 217 (267)
-..++|..++.+|-.++++++
T Consensus 192 p~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 192 PVAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHHHHCCS-TT-EEEE
T ss_pred cHHHHHHHHHhhCCCCcEEEE
Confidence 347899999999955555555
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00027 Score=60.25 Aligned_cols=145 Identities=16% Similarity=0.141 Sum_probs=79.1
Q ss_pred CCCEEEEecCCCChHHHHHH-HhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc----------------c--------
Q 041272 94 KGDTVVDATCGNGYDTLMML-KMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS----------------K-------- 148 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la-~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~----------------~-------- 148 (267)
.|.++||||||+-..-..-| +. ..+++..|.++.-.+..++-+++.+. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~------f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~ 129 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW------FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEE 129 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT------EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh------hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHH
Confidence 56799999999965543333 33 35799999999998877777665321 0
Q ss_pred ccccceE-EEecChhhhhhcCCC---CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 149 AEKGLVK-LFNMCHSRMEEIVPK---STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 149 ~~~~~v~-~~~~~~~~l~~~~~~---~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
..-..|+ ++..|......+.+. ...+|++++.+.. .......+.+..+++++.++|||||.|++....+..
T Consensus 130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcL-----E~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t 204 (256)
T PF01234_consen 130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCL-----ESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST 204 (256)
T ss_dssp HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSH-----HHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S
T ss_pred HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHH-----HHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce
Confidence 0011122 222222211111110 1248888877421 001124577889999999999999999987653321
Q ss_pred ----------CChhhHHHHHHHHHhCCCCceEEEEEee
Q 041272 225 ----------GGREELEAVEAFARSLSVDDWICCKFQM 252 (267)
Q Consensus 225 ----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (267)
......+.+.+-+ ...+|.+...+-
T Consensus 205 ~Y~vG~~~F~~l~l~ee~v~~al---~~aG~~i~~~~~ 239 (256)
T PF01234_consen 205 YYMVGGHKFPCLPLNEEFVREAL---EEAGFDIEDLEK 239 (256)
T ss_dssp EEEETTEEEE---B-HHHHHHHH---HHTTEEEEEEEG
T ss_pred eEEECCEecccccCCHHHHHHHH---HHcCCEEEeccc
Confidence 0111223333333 356788888773
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.6e-05 Score=58.32 Aligned_cols=136 Identities=10% Similarity=0.173 Sum_probs=88.4
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.|.+|||+|.|- |..++.+|...+ ...|.-.|-+++.++..++....+-.+ -...+..+...... .....+..
T Consensus 29 rg~~ilelgggft~laglmia~~a~----~~~v~ltdgne~svrnv~ki~~~n~~s-~~tsc~vlrw~~~~-aqsq~eq~ 102 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAP----DSSVWLTDGNEESVRNVEKIRNSNMAS-SLTSCCVLRWLIWG-AQSQQEQH 102 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecC----CceEEEecCCHHHHHHHHHHHhccccc-ccceehhhHHHHhh-hHHHHhhC
Confidence 467999999996 666777787764 489999999999999888766554210 12233222111110 00112234
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (267)
.||+|+.. ....-.+......+.+..+|+|.|..++..+ ...+.+++|.......+|.+...+
T Consensus 103 tFDiIlaA---------DClFfdE~h~sLvdtIk~lL~p~g~Al~fsP-------RRg~sL~kF~de~~~~gf~v~l~e 165 (201)
T KOG3201|consen 103 TFDIILAA---------DCLFFDEHHESLVDTIKSLLRPSGRALLFSP-------RRGQSLQKFLDEVGTVGFTVCLEE 165 (201)
T ss_pred cccEEEec---------cchhHHHHHHHHHHHHHHHhCcccceeEecC-------cccchHHHHHHHHHhceeEEEecc
Confidence 79999876 2222235557888999999999999766554 344677788888877788776543
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00019 Score=58.24 Aligned_cols=118 Identities=12% Similarity=0.144 Sum_probs=70.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc---ccccceEEEecChhhhhhcCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK---AEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~---~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..-.+.|||||-|.+...|+..+ |.--+.|+||--..-++.++++.+.... ....|+.+.....-.....+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~f----PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~ 135 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKF----PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE 135 (249)
T ss_pred ccceEEeeccCccchhhhccccC----ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhh
Confidence 44578999999999999999985 4589999999999888888888764310 1244555543322211111111
Q ss_pred CCcEEEEEEeCCCCCCCCCcee---e-chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVI---T-TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~---~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+..+-.++.+ |+ ..+- + +.-.....+.+..=+|++||.++...-
T Consensus 136 kgqLskmff~f---pd--pHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 136 KGQLSKMFFLF---PD--PHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred hcccccceeec---CC--hhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 22222222221 11 1111 0 111124677788888999999987653
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00026 Score=59.33 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=50.2
Q ss_pred hcCCCC--EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc---cc--cccccceEEEecChhh
Q 041272 91 VVRKGD--TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT---TS--KAEKGLVKLFNMCHSR 163 (267)
Q Consensus 91 ~l~~~~--~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~---~~--~~~~~~v~~~~~~~~~ 163 (267)
.++++. +|||.-+|-|..++.+|.. +++|+++|.||-+....+.-++.. .. .....++++++++..+
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASL------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHH------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHcc------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 356664 9999999999999999965 479999999998755544333222 10 0123689999988776
Q ss_pred hhhcCCCCCcEEEEEEeCCC
Q 041272 164 MEEIVPKSTAVRLVAFNLGY 183 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~ 183 (267)
+.. .++.++|+|++|+-+
T Consensus 144 ~L~--~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 144 YLR--QPDNSFDVVYFDPMF 161 (234)
T ss_dssp HCC--CHSS--SEEEE--S-
T ss_pred HHh--hcCCCCCEEEECCCC
Confidence 655 334589999999755
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=58.72 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=79.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
..+|||.=+|||.=++..|...+. .+|+.-|+||.+++.+++|++.|. ..+...+..|...+.... ...|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~----~~v~lNDisp~Avelik~Nv~~N~----~~~~~v~n~DAN~lm~~~--~~~f 122 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV----VKVVLNDISPKAVELIKENVRLNS----GEDAEVINKDANALLHEL--HRAF 122 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc----cEEEEccCCHHHHHHHHHHHHhcC----cccceeecchHHHHHHhc--CCCc
Confidence 579999999999999999988753 489999999999999999999983 355666665555443322 2468
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|+|=.| |++.. .-+++.+.+.++.||++.++.-
T Consensus 123 d~IDiD----PFGSP---------aPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 123 DVIDID----PFGSP---------APFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred cEEecC----CCCCC---------chHHHHHHHHhhcCCEEEEEec
Confidence 888777 33322 2688889999999999998764
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0018 Score=55.21 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=75.1
Q ss_pred CEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC----
Q 041272 96 DTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP---- 169 (267)
Q Consensus 96 ~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---- 169 (267)
...||||||- -..+-.+|+... |.++|+=+|.+|-.+..++..+..+. ..+..+++.|..+...++.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~---P~aRVVYVD~DPvv~ah~ralL~~~~----~g~t~~v~aD~r~p~~iL~~p~~ 142 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVA---PDARVVYVDNDPVVLAHARALLADNP----RGRTAYVQADLRDPEAILAHPEV 142 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH----TT-EEEEEESSHHHHHCCHHHHTT-T----TSEEEEEE--TT-HHHHHCSHHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhC---CCceEEEECCCchHHHHHHhhhcCCC----CccEEEEeCCCCCHHHHhcCHHH
Confidence 4799999996 334566777764 47999999999999999999887754 2347888887776555432
Q ss_pred -----CCCcEEEEEEe-CCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHH
Q 041272 170 -----KSTAVRLVAFN-LGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFAR 238 (267)
Q Consensus 170 -----~~~~~d~ii~~-~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 238 (267)
-+.++-+++.. ++++++ .+++..++..+.+.|.||..|+++-..... ..+..+.+...++
T Consensus 143 ~~~lD~~rPVavll~~vLh~v~D--------~~dp~~iv~~l~d~lapGS~L~ish~t~d~-~p~~~~~~~~~~~ 208 (267)
T PF04672_consen 143 RGLLDFDRPVAVLLVAVLHFVPD--------DDDPAGIVARLRDALAPGSYLAISHATDDG-APERAEALEAVYA 208 (267)
T ss_dssp HCC--TTS--EEEECT-GGGS-C--------GCTHHHHHHHHHCCS-TT-EEEEEEEB-TT-SHHHHHHHHHHHH
T ss_pred HhcCCCCCCeeeeeeeeeccCCC--------ccCHHHHHHHHHHhCCCCceEEEEecCCCC-CHHHHHHHHHHHH
Confidence 12233333332 233332 245689999999999999999998775432 3333344444443
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0014 Score=58.31 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=65.7
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
...++++||=.|||. |..+..+|+..+. .+|+++|.+++.++.+++. | .. .++.....++.+...
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~----~~Vi~~~~~~~~~~~a~~l----G----a~--~vi~~~~~~~~~~~~ 231 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGA----AEIVCADVSPRSLSLAREM----G----AD--KLVNPQNDDLDHYKA 231 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEEeCCHHHHHHHHHc----C----Cc--EEecCCcccHHHHhc
Confidence 345788999999987 7888888888642 4799999999988888752 2 01 111111112222221
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|+++-..+. ...+..+.+.|++||++++...
T Consensus 232 ~~g~~D~vid~~G~---------------~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 232 EKGYFDVSFEVSGH---------------PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred cCCCCCEEEECCCC---------------HHHHHHHHHHhhcCCEEEEEcc
Confidence 12247777766432 3567888999999999987654
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.001 Score=59.59 Aligned_cols=105 Identities=24% Similarity=0.251 Sum_probs=73.2
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-C-hhhhhhcCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-C-HSRMEEIVP 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~-~~~l~~~~~ 169 (267)
.++.+|+=+|||+ |.++..+++..|. .+|+.+|.+++-++.|++...... +..... + .....+. .
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga----~~Viv~d~~~~Rl~~A~~~~g~~~-------~~~~~~~~~~~~~~~~-t 234 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGA----SVVIVVDRSPERLELAKEAGGADV-------VVNPSEDDAGAEILEL-T 234 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC----ceEEEeCCCHHHHHHHHHhCCCeE-------eecCccccHHHHHHHH-h
Confidence 4455999999999 9999999999864 899999999999999988443211 110000 0 1111111 1
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
....+|+++-..+. ..++.++.+.++|||.++++..++..
T Consensus 235 ~g~g~D~vie~~G~---------------~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 235 GGRGADVVIEAVGS---------------PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCCCCCEEEECCCC---------------HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 12258888887542 46899999999999999998776544
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=2.4e-05 Score=63.51 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=63.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
..++||+|.|.|.++..++..+ .+|++.|.|..|....++. + ..-+..+ +....+.++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f------eevyATElS~tMr~rL~kk----~----ynVl~~~--------ew~~t~~k~ 170 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF------EEVYATELSWTMRDRLKKK----N----YNVLTEI--------EWLQTDVKL 170 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH------HHHHHHHhhHHHHHHHhhc----C----Cceeeeh--------hhhhcCcee
Confidence 4699999999999999999886 5799999999998776552 1 1111111 122234467
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccC-CcEEEEE
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP-GGLISMV 218 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~ 218 (267)
|+|.+- .++..-.++-+.++.+..+|.| +|++++.
T Consensus 171 dli~cl---------NlLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 171 DLILCL---------NLLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ehHHHH---------HHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 877443 1222223446899999999999 8888764
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.013 Score=49.29 Aligned_cols=124 Identities=11% Similarity=0.116 Sum_probs=68.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS-- 171 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~-- 171 (267)
.|.+||=+|=+- ..++.+|.. +. ..+|+.+|+++..++..++.+++.+ . +++.+.. |+...+++.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~-~~---~~~I~VvDiDeRll~fI~~~a~~~g----l-~i~~~~~---DlR~~LP~~~~ 110 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALT-GL---PKRITVVDIDERLLDFINRVAEEEG----L-PIEAVHY---DLRDPLPEELR 110 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHH-T-----SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE------TTS---TTTS
T ss_pred cCCEEEEEcCCc-HHHHHHHhh-CC---CCeEEEEEcCHHHHHHHHHHHHHcC----C-ceEEEEe---cccccCCHHHh
Confidence 578999998433 233334432 22 4799999999999999999999987 2 3666653 344444432
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCc-EEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG-LISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
..||+++.|++|- .+...-++.+....||..| ..++..- ..+.+......+++.+..+.
T Consensus 111 ~~fD~f~TDPPyT----------~~G~~LFlsRgi~~Lk~~g~~gy~~~~-~~~~s~~~~~~~Q~~l~~~g 170 (243)
T PF01861_consen 111 GKFDVFFTDPPYT----------PEGLKLFLSRGIEALKGEGCAGYFGFT-HKEASPDKWLEVQRFLLEMG 170 (243)
T ss_dssp S-BSEEEE---SS----------HHHHHHHHHHHHHTB-STT-EEEEEE--TTT--HHHHHHHHHHHHTS-
T ss_pred cCCCEEEeCCCCC----------HHHHHHHHHHHHHHhCCCCceEEEEEe-cCcCcHHHHHHHHHHHHHCC
Confidence 5899999998772 3555788999999999666 5444333 22223445556666666443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00083 Score=59.03 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=69.6
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
-...+|+|.|.|..+..+...+ .+|-+++.+...+..++..+. .| |+.+-+| +....|+ -
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f------p~ik~infdlp~v~~~a~~~~-~g-------V~~v~gd---mfq~~P~---~ 237 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY------PHIKGINFDLPFVLAAAPYLA-PG-------VEHVAGD---MFQDTPK---G 237 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC------CCCceeecCHHHHHhhhhhhc-CC-------cceeccc---ccccCCC---c
Confidence 3789999999999999999864 358899998888888877664 22 4444333 2333332 3
Q ss_pred EEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 175 RLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
|+|+.- -++|+. ++..++|+++++.|+|||.+++.+..
T Consensus 238 daI~mk---------WiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 238 DAIWMK---------WILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred CeEEEE---------eecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 466655 233322 34579999999999999999998773
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00076 Score=56.04 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=44.1
Q ss_pred chhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 77 GTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
......+.+.+++..-.+|+.|||.-||+|..+....+. +.+.+|+|++++.++.|++
T Consensus 174 ~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l------~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 174 TQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL------GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT------T-EEEEEESSHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHc------CCeEEEEeCCHHHHHHhcC
Confidence 355667778887777789999999999999888777765 5789999999999999875
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00096 Score=58.06 Aligned_cols=61 Identities=20% Similarity=0.137 Sum_probs=50.4
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~ 144 (267)
....++...++...-.+|+.|||.-||+|..+....+. +.+.+|+|++++.++.|++++..
T Consensus 192 ~kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l------gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 192 QKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS------GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred cChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 44556677777666679999999999999888776665 57899999999999999999864
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.019 Score=47.49 Aligned_cols=120 Identities=11% Similarity=0.098 Sum_probs=82.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++.+.++.||||--|++...|.+... ...+++.|+++..++.|.++.++++ ...+++...+|. ...+..+
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~~----~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dg---l~~l~~~ 83 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNNP----ASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDG---LAVLELE 83 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcCC----cceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCC---ccccCcc
Confidence 45677799999999999999998753 5899999999999999999999988 577777776554 3333333
Q ss_pred CcEEEEE-EeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhC
Q 041272 172 TAVRLVA-FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240 (267)
Q Consensus 172 ~~~d~ii-~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l 240 (267)
..+|.++ ..+| .....+++++-.+.|+.--++++ .+.. ....+.+|+...
T Consensus 84 d~~d~ivIAGMG------------G~lI~~ILee~~~~l~~~~rlIL-QPn~------~~~~LR~~L~~~ 134 (226)
T COG2384 84 DEIDVIVIAGMG------------GTLIREILEEGKEKLKGVERLIL-QPNI------HTYELREWLSAN 134 (226)
T ss_pred CCcCEEEEeCCc------------HHHHHHHHHHhhhhhcCcceEEE-CCCC------CHHHHHHHHHhC
Confidence 3566554 3332 13345777777777664434433 2221 235566777654
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0015 Score=54.91 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=51.5
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT 145 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~ 145 (267)
..+.++...++...-.+|+.|||.-||+|..+....+. +.+.+|+|++++..+.|++++++.
T Consensus 147 ~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~------~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 147 EKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS------GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 55666777777666678999999999999888777665 468999999999999999998763
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0078 Score=51.80 Aligned_cols=117 Identities=14% Similarity=0.037 Sum_probs=84.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..-++||-||-|-|......+++- . -..+.-+|++...++..++-+....-.....++.+..+|...+.+.... .
T Consensus 120 ~npkkvlVVgggDggvlrevikH~-~---ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~-~ 194 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHK-S---VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE-N 194 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccc-c---ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc-C
Confidence 445799999999999999988872 2 2578999999999999999887653223457888888887777665543 4
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+||+|+.+..-.-. -...-..+.+++.+.+.||+||+++...
T Consensus 195 ~~dVii~dssdpvg-----pa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 195 PFDVIITDSSDPVG-----PACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred CceEEEEecCCccc-----hHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 89999988321100 0112234677888999999999997653
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00071 Score=61.79 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=83.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh-hhcCCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM-EEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l-~~~~~~~~ 172 (267)
++-+|||.=|++|.-++..|+.++. -.+|++-|.++.+|+..++|.+.++ ....++..+.|+..+ ........
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~---v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPG---VRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcc---hhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhcccccc
Confidence 4569999999999999999999864 4689999999999999999999886 345555555555433 22232334
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|=.| |++.. ..+|+.+.+.+..||+|.+++-
T Consensus 183 ~FDvIDLD----PyGs~---------s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 183 FFDVIDLD----PYGSP---------SPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ccceEecC----CCCCc---------cHHHHHHHHHhhcCCEEEEEec
Confidence 78998887 33322 3799999999999999998764
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0064 Score=55.77 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=83.9
Q ss_pred hhHHHHhhHHHhhhcCCCC-EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE
Q 041272 78 TLITIAANGVWKHVVRKGD-TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL 156 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~-~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~ 156 (267)
+...-.+...+...+.+-. ++|-+|||.-.++..+.+-. -..|+.+|+|+..++.+....... .....+
T Consensus 31 Y~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G-----~~dI~~iD~S~V~V~~m~~~~~~~-----~~~~~~ 100 (482)
T KOG2352|consen 31 YGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNG-----FEDITNIDSSSVVVAAMQVRNAKE-----RPEMQM 100 (482)
T ss_pred HHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcC-----CCCceeccccHHHHHHHHhccccC-----CcceEE
Confidence 3333344444555667777 99999999998888887642 357999999999999888765432 234444
Q ss_pred EecChhhhhhcCCCCCcEEEEEEe--CCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 157 FNMCHSRMEEIVPKSTAVRLVAFN--LGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~d~ii~~--~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.. .++.....++.+||+++.- +..+-..... ..+.......+.++.++|+|||++..+.+
T Consensus 101 ~~---~d~~~l~fedESFdiVIdkGtlDal~~de~a-~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 101 VE---MDMDQLVFEDESFDIVIDKGTLDALFEDEDA-LLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred EE---ecchhccCCCcceeEEEecCccccccCCchh-hhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 44 3445555667788888643 1111111111 11124456788999999999999877766
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0016 Score=53.63 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=69.3
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
-++|||||=+......-... ..|+.||+++.--. ..+.+|... .+.. .++..||
T Consensus 53 lrlLEVGals~~N~~s~~~~-------fdvt~IDLns~~~~--------------I~qqDFm~r---plp~--~~~e~Fd 106 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW-------FDVTRIDLNSQHPG--------------ILQQDFMER---PLPK--NESEKFD 106 (219)
T ss_pred ceEEeecccCCCCcccccCc-------eeeEEeecCCCCCC--------------ceeeccccC---CCCC--Cccccee
Confidence 59999999876655443322 57999999872110 112223220 1111 1345899
Q ss_pred EEEEeC--CCCCCCCCceeechhhHHHHHHHHHhcccCCcE-----EEEEEecCCCCCh--hhHHHHHHHHHhCCCCceE
Q 041272 176 LVAFNL--GYLPGGDKSVITTSETTKMALEAAERILIPGGL-----ISMVVYVGHPGGR--EELEAVEAFARSLSVDDWI 246 (267)
Q Consensus 176 ~ii~~~--~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~ 246 (267)
+|++.+ -|+| .+...-++++.+.+.|+|+|. |+++.+..+.... -..+.+...++. -+|.
T Consensus 107 vIs~SLVLNfVP--------~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~---LGf~ 175 (219)
T PF11968_consen 107 VISLSLVLNFVP--------DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMES---LGFT 175 (219)
T ss_pred EEEEEEEEeeCC--------CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHh---CCcE
Confidence 998885 2233 345667999999999999999 8887764332111 112333344444 4566
Q ss_pred EEEEe
Q 041272 247 CCKFQ 251 (267)
Q Consensus 247 ~~~~~ 251 (267)
.+++.
T Consensus 176 ~~~~~ 180 (219)
T PF11968_consen 176 RVKYK 180 (219)
T ss_pred EEEEE
Confidence 66543
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0035 Score=47.17 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=42.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~ 146 (267)
.+.+|+|||.+-|..++.++.. | +.+|++++.++...+..+++++.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-G----AK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-G----ASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-C----ccEEEEeccCHHHHHHHHHHhhhhe
Confidence 5789999999999999999976 2 4799999999999999999888754
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.01 Score=45.90 Aligned_cols=77 Identities=8% Similarity=-0.005 Sum_probs=55.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
++.++.+|+|+|.|++.+..++.. ...-+|+|+++-.+.+++-++-+.+ ..+...|.. .|+.+....++
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g-----~~~a~GvELNpwLVaysrl~a~R~g---~~k~trf~R---kdlwK~dl~dy 139 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG-----LRPAVGVELNPWLVAYSRLHAWRAG---CAKSTRFRR---KDLWKVDLRDY 139 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC-----CCcCCceeccHHHHHHHHHHHHHHh---cccchhhhh---hhhhhcccccc
Confidence 566799999999999999998863 2467999999999999999887766 345555553 45555444444
Q ss_pred cEEEEEEe
Q 041272 173 AVRLVAFN 180 (267)
Q Consensus 173 ~~d~ii~~ 180 (267)
.+.+|+..
T Consensus 140 ~~vviFga 147 (199)
T KOG4058|consen 140 RNVVIFGA 147 (199)
T ss_pred ceEEEeeh
Confidence 44444443
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00042 Score=59.47 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=67.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+..|+|+..|-|++++...-..+ ...|+++|.+|.+++.-+++++.|+ ...+..++.++.. ....+..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag----Ak~V~A~EwNp~svEaLrR~~~~N~---V~~r~~i~~gd~R----~~~~~~~ 262 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG----AKTVFACEWNPWSVEALRRNAEANN---VMDRCRITEGDNR----NPKPRLR 262 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC----ccEEEEEecCHHHHHHHHHHHHhcc---hHHHHHhhhcccc----ccCcccc
Confidence 568999999999999994443444 4799999999999999999999876 3344433333321 1222234
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCc--EEEEEEec
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG--LISMVVYV 221 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG--~l~i~~~~ 221 (267)
.|-| ++|.+|... +-+-.+.++|||.| ++-|....
T Consensus 263 AdrV--nLGLlPSse-----------~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 263 ADRV--NLGLLPSSE-----------QGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred chhe--eeccccccc-----------cchHHHHHHhhhcCCcEEEEeccc
Confidence 4544 345566653 44556677788654 56555443
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.022 Score=49.27 Aligned_cols=132 Identities=12% Similarity=0.012 Sum_probs=72.1
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEE
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL 176 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ 176 (267)
+|+|+.||.|.++..+.+. | ...|.++|+++.+++..+.|.... ++.+|..++..... ...+|+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G----~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~-~~~~D~ 65 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G----FEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDF-IPDIDL 65 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C----CEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhc-CCCCCE
Confidence 6999999999998888765 2 246789999999999888876431 23333333322110 236899
Q ss_pred EEEeCCCCCCCCCceee---ch-h-hHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEE
Q 041272 177 VAFNLGYLPGGDKSVIT---TS-E-TTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWIC 247 (267)
Q Consensus 177 ii~~~~~lp~~d~~~~~---~~-~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (267)
++..++.=+++....-. .. . ....++ ++.+.++|. +++......-...........+.+.+...+|.+
T Consensus 66 l~~gpPCq~fS~ag~~~~~~d~r~~L~~~~~-~~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~ 138 (275)
T cd00315 66 LTGGFPCQPFSIAGKRKGFEDTRGTLFFEII-RILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTLEELGYNV 138 (275)
T ss_pred EEeCCCChhhhHHhhcCCCCCchHHHHHHHH-HHHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHHHhCCcEE
Confidence 99997663332211101 11 1 112333 344455776 333333221111111334555555665566664
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0099 Score=53.88 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=71.2
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC--hhhhhhc
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC--HSRMEEI 167 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 167 (267)
.+.++.+||..|||. |..+..+|+..+. .+|+++|.+++..+.+++.... ..+.....+ ...+.+.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~----~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~ 249 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGA----ERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALREL 249 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHH
Confidence 466889999999998 8899999998752 4699999999999888874211 111111110 1112222
Q ss_pred CCCCCcEEEEEEeCCCCCC------CCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPG------GDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~------~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. .+..+|+++-..+.-.. --....+...+....++++.+.|+++|.+++...
T Consensus 250 ~-~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 250 T-GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred c-CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 2 22357877765321000 0000011122335678999999999999987653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0027 Score=57.28 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=47.8
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM 159 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~ 159 (267)
.|||||+|||.++..+++... -.|+++|.-.-|++.|++...+++ +.+++.++..
T Consensus 69 ~vLdigtGTGLLSmMAvraga-----D~vtA~EvfkPM~d~arkI~~kng---~SdkI~vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA-----DSVTACEVFKPMVDLARKIMHKNG---MSDKINVINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC-----CeEEeehhhchHHHHHHHHHhcCC---Cccceeeecc
Confidence 699999999999998888742 479999999999999999999988 6778887753
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.015 Score=52.03 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=61.8
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeC---ChHHHHHHHHHHhhccccccccceEEEecChhhhhhc
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDI---QSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~---s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 167 (267)
+.++.+||=+|+|. |.++..+|+..+ .+|++++. +++..+.+++ .+ . +.+.....++.+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G-----~~vi~~~~~~~~~~~~~~~~~----~G----a---~~v~~~~~~~~~- 232 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG-----FEVYVLNRRDPPDPKADIVEE----LG----A---TYVNSSKTPVAE- 232 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC-----CeEEEEecCCCCHHHHHHHHH----cC----C---EEecCCccchhh-
Confidence 45788999999987 888888888864 58999987 5666666654 22 1 112111111111
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
......+|+++-..+. ...+.++.+.|++||.+++...
T Consensus 233 ~~~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 233 VKLVGEFDLIIEATGV---------------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred hhhcCCCCEEEECcCC---------------HHHHHHHHHHccCCcEEEEEec
Confidence 1112357777766432 2478888999999999977654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0027 Score=55.59 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=76.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHH-------HHHHHhhccccccccceEEEecChhh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKS-------TSSLLDKTTSKAEKGLVKLFNMCHSR 163 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~-------a~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (267)
.+++|+.|+|--.|||.+....|.. ++.|+|.||+-.++.. .+.|++..+.. ..-+.++.+|..+
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~F------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~--~~fldvl~~D~sn 276 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHF------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS--SQFLDVLTADFSN 276 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhh------cceeeccccchheeecccCCCcchhHhHHHhCCc--chhhheeeecccC
Confidence 4679999999999999999999987 6899999999988872 34455554410 1112233322221
Q ss_pred hhhcCCCCCcEEEEEEeCCC-CCCCCCc---------------eeech--------hhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGY-LPGGDKS---------------VITTS--------ETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~-lp~~d~~---------------~~~~~--------~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
- .+..+..||.|+++++| +...-+. ..|.+ .-....|.-+.+.|.-||++++..
T Consensus 277 ~--~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 277 P--PLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred c--chhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 1 12235589999999988 2211110 11111 112445667789999999997755
Q ss_pred e
Q 041272 220 Y 220 (267)
Q Consensus 220 ~ 220 (267)
+
T Consensus 355 p 355 (421)
T KOG2671|consen 355 P 355 (421)
T ss_pred C
Confidence 4
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.015 Score=51.74 Aligned_cols=95 Identities=21% Similarity=0.197 Sum_probs=62.3
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHh-cCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKM-VADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~-~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
+++|++||=+|||. |..+..+++. .+ +.+|+++|.+++.++.|++ +.. ...+ .++.+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g----~~~vi~~~~~~~k~~~a~~-~~~---------~~~~----~~~~~--- 219 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYP----ESKLVVFGKHQEKLDLFSF-ADE---------TYLI----DDIPE--- 219 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcC----CCcEEEEeCcHhHHHHHhh-cCc---------eeeh----hhhhh---
Confidence 56899999999987 6677777765 33 3689999999988888764 211 1111 11111
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...+|+++-..+- ......++++.++|++||++++...
T Consensus 220 -~~g~d~viD~~G~------------~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 220 -DLAVDHAFECVGG------------RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred -ccCCcEEEECCCC------------CccHHHHHHHHHhCcCCcEEEEEee
Confidence 1136777765431 0013578889999999999987654
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.078 Score=44.96 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=75.3
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc--ccccceEE--EecChhhhhhcCCC
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK--AEKGLVKL--FNMCHSRMEEIVPK 170 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~--~~~~~v~~--~~~~~~~l~~~~~~ 170 (267)
..+||++|+|+|..++.+|... +.+|+--|..... +.-+.+...++.. .....+.. .............+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~-----~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~ 160 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL-----GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLP 160 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh-----cceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccC
Confidence 4579999999998888888865 4688888865543 3333333222110 01113332 22222222222222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF 250 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (267)
. .+|+++.. .+...+.....++.-+..+|..+|.+++...-... ................+.+...
T Consensus 161 ~-~~Dlilas---------Dvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~~----~~~~~~~~~~~~~~~~~~v~~~ 226 (248)
T KOG2793|consen 161 N-PFDLILAS---------DVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRRD----AAWEIEVLLFKKDLKIFDVVQE 226 (248)
T ss_pred C-cccEEEEe---------eeeecCCcchhHHHHHHHHHhcCCeEEEEEecccc----hHHHHHHHHhhhhhccceeeeE
Confidence 1 17888876 45556666678888888899999955554442211 1122333334444445555544
Q ss_pred ee
Q 041272 251 QM 252 (267)
Q Consensus 251 ~~ 252 (267)
.+
T Consensus 227 ~~ 228 (248)
T KOG2793|consen 227 SF 228 (248)
T ss_pred ec
Confidence 44
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.011 Score=44.66 Aligned_cols=88 Identities=24% Similarity=0.317 Sum_probs=61.9
Q ss_pred CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----hhhhcCCCCCcEEEEEE
Q 041272 104 GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----RMEEIVPKSTAVRLVAF 179 (267)
Q Consensus 104 G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~l~~~~~~~~~~d~ii~ 179 (267)
|.|..+..+|+..| .+|+++|.++...+.+++.-. -.++..... .+.+... +..+|+++-
T Consensus 1 ~vG~~a~q~ak~~G-----~~vi~~~~~~~k~~~~~~~Ga----------~~~~~~~~~~~~~~i~~~~~-~~~~d~vid 64 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-----AKVIATDRSEEKLELAKELGA----------DHVIDYSDDDFVEQIRELTG-GRGVDVVID 64 (130)
T ss_dssp HHHHHHHHHHHHTT-----SEEEEEESSHHHHHHHHHTTE----------SEEEETTTSSHHHHHHHHTT-TSSEEEEEE
T ss_pred ChHHHHHHHHHHcC-----CEEEEEECCHHHHHHHHhhcc----------cccccccccccccccccccc-cccceEEEE
Confidence 45888999999873 799999999999888876321 112222222 2223332 247999988
Q ss_pred eCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 180 NLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 180 ~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..+. ...++.+.++|++||.++++...+
T Consensus 65 ~~g~---------------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 65 CVGS---------------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSSS---------------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ecCc---------------HHHHHHHHHHhccCCEEEEEEccC
Confidence 8542 478999999999999998877654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.021 Score=53.62 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=67.0
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----------
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH---------- 161 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~---------- 161 (267)
.++++|+=+|+|. |..++..|+.+| ++|+++|.+++.++.+++- | .....+....
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-----A~V~a~D~~~~rle~aesl----G-----A~~v~i~~~e~~~~~~gya~ 228 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-----AIVRAFDTRPEVAEQVESM----G-----AEFLELDFEEEGGSGDGYAK 228 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHHc----C-----CeEEEeccccccccccchhh
Confidence 4789999999999 899999999875 5899999999999988772 2 1101011000
Q ss_pred ---hhh----hhcCCC-CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 162 ---SRM----EEIVPK-STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 162 ---~~l----~~~~~~-~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+. .+.+.+ -..+|+++...+. |.. +.+..+.+++.+.+||||.++.+..
T Consensus 229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~-pg~--------~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 229 VMSEEFIKAEMALFAEQAKEVDIIITTALI-PGK--------PAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hcchhHHHHHHHHHHhccCCCCEEEECCCC-Ccc--------cCcchHHHHHHHhcCCCCEEEEEcc
Confidence 010 011111 1258999887543 110 1112335999999999999877654
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.03 Score=48.33 Aligned_cols=99 Identities=17% Similarity=0.087 Sum_probs=63.1
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec--ChhhhhhcC
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM--CHSRMEEIV 168 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 168 (267)
..++++||=+|+|+ |..+..+|+..+. .+|+++|.+++..+.+++. + .. .++.. ....+....
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~----~~Vi~~~~~~~r~~~a~~~----G----a~--~~i~~~~~~~~~~~~~ 183 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGA----ARVVAADPSPDRRELALSF----G----AT--ALAEPEVLAERQGGLQ 183 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHc----C----Cc--EecCchhhHHHHHHHh
Confidence 45788999999877 7777888887642 3599999999888777652 2 00 11110 011111111
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|+++-..+. ...++.+.+.|+++|++++...
T Consensus 184 -~~~g~d~vid~~G~---------------~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 184 -NGRGVDVALEFSGA---------------TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred -CCCCCCEEEECCCC---------------hHHHHHHHHHhcCCCEEEEecc
Confidence 12247777765321 3578888999999999987654
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.034 Score=47.01 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=39.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~ 146 (267)
.+.+..+|+|||||-=-++..+.... ++..++|+|++..+++...+-+...+
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~~~~----~~a~Y~a~DID~~~ve~l~~~l~~l~ 153 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWMPEA----PGATYIAYDIDSQLVEFLNAFLAVLG 153 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTTTSS----TT-EEEEEESBHHHHHHHHHHHHHTT
T ss_pred cCCCCchhhhhhccCCceehhhcccC----CCcEEEEEeCCHHHHHHHHHHHHhhC
Confidence 34557899999999988888766543 35799999999999999999888765
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.031 Score=50.31 Aligned_cols=100 Identities=22% Similarity=0.209 Sum_probs=65.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----M 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l 164 (267)
..++++++||=.|+|. |..+..+|+..+. .+|+++|.+++..+.+++. + . -.++.....+ +
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~----~~Vi~~~~~~~r~~~a~~~----G----a--~~~i~~~~~~~~~~i 252 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGA----SQVVAVDLNEDKLALAREL----G----A--TATVNAGDPNAVEQV 252 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CcEEEEcCCHHHHHHHHHc----C----C--ceEeCCCchhHHHHH
Confidence 3467889999999876 7777888887642 3799999999988887652 2 0 1112111112 2
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..... . .+|+++-..+. ...+..+.+.|++||.+++...
T Consensus 253 ~~~~~-~-g~d~vid~~G~---------------~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 253 RELTG-G-GVDYAFEMAGS---------------VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred HHHhC-C-CCCEEEECCCC---------------hHHHHHHHHHHhcCCEEEEEcc
Confidence 22221 2 47888765322 2577888899999999987554
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.11 Score=44.18 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=74.0
Q ss_pred CCEEEEecCCCChHHHHHHHhcCC-CCCCcEEEEEeCChH--------------------------HHHHHHHHHhhccc
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVAD-ESSAGCVYGLDIQSE--------------------------ALKSTSSLLDKTTS 147 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~-~~p~~~v~giD~s~~--------------------------~i~~a~~~~~~~~~ 147 (267)
.+.|+|+||-.|..++.++..+.. ..++.++++.|--+. .++..++++.+.+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g- 153 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG- 153 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT-
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC-
Confidence 359999999999888766543311 012468999874332 2444445554443
Q ss_pred cccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCCh
Q 041272 148 KAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGR 227 (267)
Q Consensus 148 ~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 227 (267)
....++.++.+...+-....+ ...+-++..+. ...+....+|+.++..|.|||++++-++.. .
T Consensus 154 -l~~~~v~~vkG~F~dTLp~~p-~~~IAll~lD~-----------DlYesT~~aLe~lyprl~~GGiIi~DDY~~----~ 216 (248)
T PF05711_consen 154 -LLDDNVRFVKGWFPDTLPDAP-IERIALLHLDC-----------DLYESTKDALEFLYPRLSPGGIIIFDDYGH----P 216 (248)
T ss_dssp -TSSTTEEEEES-HHHHCCC-T-T--EEEEEE--------------SHHHHHHHHHHHGGGEEEEEEEEESSTTT----H
T ss_pred -CCcccEEEECCcchhhhccCC-CccEEEEEEec-----------cchHHHHHHHHHHHhhcCCCeEEEEeCCCC----h
Confidence 123678888766643222111 12343443331 135667899999999999999999877743 3
Q ss_pred hhHHHHHHHHHhCCC
Q 041272 228 EELEAVEAFARSLSV 242 (267)
Q Consensus 228 ~~~~~~~~~~~~l~~ 242 (267)
...+++.+|.++...
T Consensus 217 gcr~AvdeF~~~~gi 231 (248)
T PF05711_consen 217 GCRKAVDEFRAEHGI 231 (248)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCC
Confidence 456888999887554
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.034 Score=49.76 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=64.4
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----hh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----ME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l~ 165 (267)
.++++++||=.|+|. |..+..+|+..+. .+|+++|.+++..+.+++. + .. .++.....+ +.
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~----~~Vi~~~~~~~~~~~~~~~----G----a~--~~i~~~~~~~~~~i~ 238 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGA----SKIIAVDIDDRKLEWAREF----G----AT--HTVNSSGTDPVEAIR 238 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHHc----C----Cc--eEEcCCCcCHHHHHH
Confidence 467899999999876 7777888887642 3699999999988888642 2 01 112111111 22
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
... ....+|+++-..+. ...++.+.+.+++||++++...
T Consensus 239 ~~~-~~~g~d~vid~~g~---------------~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 239 ALT-GGFGADVVIDAVGR---------------PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred HHh-CCCCCCEEEECCCC---------------HHHHHHHHHHhccCCEEEEECC
Confidence 222 22247777765321 2567788899999999987654
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.022 Score=45.42 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=71.7
Q ss_pred ecCCCChHHHHHHHhcCCCCCCcEEEE--EeCChHHHHH---HHHHHhhccccccccceEEE-ecChhhhhhcC-CCCCc
Q 041272 101 ATCGNGYDTLMMLKMVADESSAGCVYG--LDIQSEALKS---TSSLLDKTTSKAEKGLVKLF-NMCHSRMEEIV-PKSTA 173 (267)
Q Consensus 101 lGcG~G~~~~~la~~~~~~~p~~~v~g--iD~s~~~i~~---a~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~-~~~~~ 173 (267)
+|=|.=.++..|++..+. +..+++ .|-.++..+. +.++++... ...+.++ .-|+.++.+.. .....
T Consensus 3 vGeGdfSFs~sL~~~~~~---~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~----~~g~~V~~~VDat~l~~~~~~~~~~ 75 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGS---ATNLVATSYDSEEELLQKYPDAEENLEELR----ELGVTVLHGVDATKLHKHFRLKNQR 75 (166)
T ss_pred eeccchHHHHHHHHHcCC---CCeEEEeecCchHHHHHhcccHHHHHHHHh----hcCCccccCCCCCcccccccccCCc
Confidence 555666777888888763 355655 4555444443 235554432 2233333 23444555543 23458
Q ss_pred EEEEEEeCCCCCCCCC----ceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 174 VRLVAFNLGYLPGGDK----SVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
||.|++|+|+...... .+..+..-...+++.+.++|+++|.+.|+...+.+
T Consensus 76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 9999999988752211 11123344578999999999999999998886655
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.039 Score=47.97 Aligned_cols=107 Identities=17% Similarity=0.187 Sum_probs=62.4
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHh---hccccccc-------------cceE---
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD---KTTSKAEK-------------GLVK--- 155 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~---~~~~~~~~-------------~~v~--- 155 (267)
..+||--|||.|+++..||.. +-++-|=|.|--|+-...=-+. ..+.-... +++.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~------G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~ 224 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL------GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPIS 224 (369)
T ss_pred CceEEecCCCchhHHHHHHHh------cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccccccccccccc
Confidence 558999999999999999987 3566677888777643332221 10100000 0000
Q ss_pred -----E---------EecChhhhhhcCCCC---CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 156 -----L---------FNMCHSRMEEIVPKS---TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 156 -----~---------~~~~~~~l~~~~~~~---~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
. .-.+++|+.+..... +.+|+|+.++ ++....+..++++.+..+|||||+.+
T Consensus 225 ~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf---------FIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 225 IPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF---------FIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred CccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE---------EeechHHHHHHHHHHHHhccCCcEEE
Confidence 0 000112222222222 2567776662 44456777899999999999999875
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.31 Score=45.91 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=76.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-CCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI-VPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~~~~ 172 (267)
++..|.|..||+|.+.....+.++..-....++|-+....+...|+.++.-++.. ........++ .+... .....
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~--~~t~~~~~~d--tl~~~d~~~~~ 292 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID--YANFNIINAD--TLTTKEWENEN 292 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC--ccccCcccCC--cCCCccccccc
Confidence 5679999999999998776554321001256999999999999999987654410 1112221221 12211 11234
Q ss_pred cEEEEEEeCCCCCCCCC-----------cee-e----chhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 173 AVRLVAFNLGYLPGGDK-----------SVI-T----TSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~-----------~~~-~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.+|.++.|+++-.++.. .+. | ....-..++..+...|++||...++...+
T Consensus 293 ~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 293 GFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred cCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 68999999876332211 111 1 11233578888899999999987776644
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.08 Score=46.91 Aligned_cols=94 Identities=10% Similarity=-0.048 Sum_probs=60.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..+++|++||=.|+|. |..+..+|+..+ ++|++++.+++..+.+++ .| ... ++.. .+ .
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G-----~~vi~~~~~~~~~~~a~~----~G----a~~--vi~~--~~---~- 219 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG-----ATVHVMTRGAAARRLALA----LG----AAS--AGGA--YD---T- 219 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC-----CeEEEEeCChHHHHHHHH----hC----Cce--eccc--cc---c-
Confidence 3567899999999875 666777888763 579999999988777765 22 111 1110 00 0
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|+++..-+ ....+....+.|++||++++...
T Consensus 220 -~~~~~d~~i~~~~---------------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 220 -PPEPLDAAILFAP---------------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -CcccceEEEECCC---------------cHHHHHHHHHhhCCCcEEEEEec
Confidence 0113555443211 02478888999999999987654
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.023 Score=50.16 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=65.2
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhcCCCCCc
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEIVPKSTA 173 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~~~~~ 173 (267)
..++||+|.|+|.-...+-...+. -..++-++.|+..-+..- .+.++- ..........+. .+...+. ....
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pd---l~sa~ile~sp~lrkV~~-tl~~nv---~t~~td~r~s~vt~dRl~lp-~ad~ 185 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPD---LKSAVILEASPALRKVGD-TLAENV---STEKTDWRASDVTEDRLSLP-AADL 185 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCC---chhhhhhccCHHHHHHHH-HHHhhc---ccccCCCCCCccchhccCCC-ccce
Confidence 357999999999877766665543 245777888875433332 222211 001100011111 1222222 2235
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHH
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEA 232 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 232 (267)
+++++..-..+|... .......++.+..++.|||.++|+.. |.+.|.+....
T Consensus 186 ytl~i~~~eLl~d~~------ek~i~~~ie~lw~l~~~gg~lVivEr-Gtp~Gf~~I~r 237 (484)
T COG5459 186 YTLAIVLDELLPDGN------EKPIQVNIERLWNLLAPGGHLVIVER-GTPAGFERILR 237 (484)
T ss_pred eehhhhhhhhccccC------cchHHHHHHHHHHhccCCCeEEEEeC-CCchhHHHHHH
Confidence 666655422233221 12234588999999999999988765 45556554333
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.11 Score=46.92 Aligned_cols=101 Identities=19% Similarity=0.152 Sum_probs=65.8
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----h-h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----H-S 162 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~-~ 162 (267)
..+++|++||=+|+|. |..+..+|+..|. .+|+++|.+++.++.+++ .+ .. .++... . .
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~----~~Vi~~~~~~~r~~~a~~----~G----a~--~~i~~~~~~~~~~~ 259 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGA----SKIIGVDINPEKFEKGKE----MG----IT--DFINPKDSDKPVHE 259 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC----CcEEEEcCChHHHHHHHH----cC----Cc--EEEecccccchHHH
Confidence 3567899999999987 7788888887642 379999999998888865 22 11 122111 1 1
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEec
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVYV 221 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~ 221 (267)
.+..... . .+|+++-..+. ...+..+.+.+++| |++++....
T Consensus 260 ~v~~~~~-~-g~dvvid~~G~---------------~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 260 RIREMTG-G-GVDYSFECAGN---------------VEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred HHHHHhC-C-CCCEEEECCCC---------------hHHHHHHHHhhhcCCCEEEEEccC
Confidence 1222221 2 57888776432 35778888889997 988776543
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.11 Score=45.58 Aligned_cols=100 Identities=22% Similarity=0.329 Sum_probs=64.3
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh--c
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE--I 167 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~--~ 167 (267)
.++++.+||..|+|. |..+..+|+..+ .+|++++.+++..+.+++. + ... ++......... .
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G-----~~V~~~~~s~~~~~~~~~~----g----~~~--~~~~~~~~~~~~~~ 226 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG-----AAVIAVDIKEEKLELAKEL----G----ADE--VLNSLDDSPKDKKA 226 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-----CEEEEEcCCHHHHHHHHHh----C----CCE--EEcCCCcCHHHHHH
Confidence 367888999988874 888888888864 5799999999888777541 2 111 11111111111 1
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
......+|+++...+. ...++++.+.|+++|.++....
T Consensus 227 ~~~~~~~D~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 227 AGLGGGFDVIFDFVGT---------------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred HhcCCCceEEEECCCC---------------HHHHHHHHHHhhcCCEEEEECC
Confidence 1123368888765321 3578889999999999976543
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.045 Score=46.00 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=40.0
Q ss_pred EEEecChhhhhhcCCCCCcEEEEEEeCCCCCC-C---CCceee--chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPG-G---DKSVIT--TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~-~---d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+++++|.-++...++ +.++|+|+.++||.-. . ...... ..+-...++++++|+|||||.+++..
T Consensus 3 ~l~~gD~le~l~~lp-d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 3 RFILGNCIDVMARFP-DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred eEEechHHHHHHhCC-ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 456666655544443 4589999999999421 1 100000 11224678899999999999887643
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.093 Score=46.30 Aligned_cols=104 Identities=20% Similarity=0.207 Sum_probs=70.6
Q ss_pred HhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-hhh
Q 041272 88 WKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-RME 165 (267)
Q Consensus 88 ~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-~l~ 165 (267)
-...+++|++|.=+|||. |..++.-|+..+. .++++||++++.+++|++ +.-.++++.... ++.
T Consensus 179 nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA----~~IiAvD~~~~Kl~~A~~----------fGAT~~vn~~~~~~vv 244 (366)
T COG1062 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGA----GRIIAVDINPEKLELAKK----------FGATHFVNPKEVDDVV 244 (366)
T ss_pred hcccCCCCCeEEEEeccHhHHHHHHHHHHcCC----ceEEEEeCCHHHHHHHHh----------cCCceeecchhhhhHH
Confidence 334578999999999998 8888888888764 899999999999999987 333444433211 121
Q ss_pred ----hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 166 ----EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 166 ----~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+... .-.|.++-..+. .+.+++++..+.++|..+++-...
T Consensus 245 ~~i~~~T~--gG~d~~~e~~G~---------------~~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 245 EAIVELTD--GGADYAFECVGN---------------VEVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred HHHHHhcC--CCCCEEEEccCC---------------HHHHHHHHHHHhcCCeEEEEecCC
Confidence 1211 124444333211 368888899999999998876643
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.091 Score=46.05 Aligned_cols=89 Identities=12% Similarity=0.080 Sum_probs=59.7
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
.++++||=+|||. |.++..+|+..|. ..|+++|.+++.++.|++. . ++. ..+ . ..
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~----~~v~~~~~~~~rl~~a~~~----~---------~i~--~~~--~---~~ 198 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG----SPPAVWETNPRRRDGATGY----E---------VLD--PEK--D---PR 198 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC----ceEEEeCCCHHHHHhhhhc----c---------ccC--hhh--c---cC
Confidence 3577899999987 8888888988653 4577889988777665431 1 111 000 0 12
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+|+++-..+. ...++.+.+.|++||++++...
T Consensus 199 ~g~Dvvid~~G~---------------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 199 RDYRAIYDASGD---------------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CCCCEEEECCCC---------------HHHHHHHHHhhhcCcEEEEEee
Confidence 247777766432 3567888999999999987654
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.17 Score=45.06 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=37.9
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
..++++.+||=.|+|. |..+..+|+..+ .+|+++|.+++.++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G-----~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG-----AAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-----CeEEEEcCCHHHHHHHHH
Confidence 3467899999999977 888888888764 589999999998888765
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.18 Score=44.57 Aligned_cols=101 Identities=22% Similarity=0.223 Sum_probs=63.5
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC---hhhhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC---HSRME 165 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~---~~~l~ 165 (267)
..+.++++||=+|+|. |..+..+|+..+. .+|+++|.+++..+.+++. + .. .++... ...+.
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~----~~vi~~~~~~~~~~~~~~~----g----a~--~~i~~~~~~~~~~~ 224 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGA----EDVIGVDPSPERLELAKAL----G----AD--FVINSGQDDVQEIR 224 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHh----C----CC--EEEcCCcchHHHHH
Confidence 3467899999999876 7777778887643 3499999999887777542 2 01 111111 11222
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.. ....+|+++-..+. ...+..+.+.|+++|.+++...
T Consensus 225 ~~~-~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 225 ELT-SGAGADVAIECSGN---------------TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred HHh-CCCCCCEEEECCCC---------------HHHHHHHHHHhhcCCEEEEEcC
Confidence 222 12257888765321 3466778899999999987554
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.19 Score=44.80 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=41.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCC----CcEEEEEeCChHHHHHHHHHHhhc
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESS----AGCVYGLDIQSEALKSTSSLLDKT 145 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p----~~~v~giD~s~~~i~~a~~~~~~~ 145 (267)
+..-.++|+|.|+|.++.-+.+....-+| ..+++-||.|++..+.=+++++..
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34458999999999999888876533233 478999999999988888887764
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.13 Score=46.50 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=63.7
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----h-hh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----H-SR 163 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~-~~ 163 (267)
.++++++||-.|+|+ |..+..+|+..|. ..|+++|.+++..+.|++ .+ .. .++... . ..
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~----~~vi~~~~~~~~~~~a~~----lG----a~--~~i~~~~~~~~~~~~ 255 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGA----SQIIGVDINPEKAEKAKT----FG----VT--DFINPNDLSEPIQQV 255 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEECCCHHHHHHHHH----cC----Cc--EEEcccccchHHHHH
Confidence 467899999999877 7777888887642 469999999988777754 22 11 111111 1 11
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
+.+... . .+|+++-..+. ...+..+.+.|++| |++++...
T Consensus 256 v~~~~~-~-g~d~vid~~G~---------------~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 256 IKRMTG-G-GADYSFECVGD---------------TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred HHHHhC-C-CCCEEEECCCC---------------hHHHHHHHHhhccCCCEEEEECC
Confidence 222222 2 47888766432 24678888999999 99976543
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.16 Score=45.04 Aligned_cols=100 Identities=20% Similarity=0.220 Sum_probs=62.6
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec---Chhhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM---CHSRMEE 166 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~---~~~~l~~ 166 (267)
.++++++||=.|+|+ |..+..+|+..+. ..|+++|.+++..+.+++ .+ .. .++.. +...+..
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~----~~v~~~~~~~~~~~~~~~----~G----a~--~~i~~~~~~~~~~~~ 222 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGA----KSVTAIDINSEKLALAKS----LG----AM--QTFNSREMSAPQIQS 222 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEECCCHHHHHHHHH----cC----Cc--eEecCcccCHHHHHH
Confidence 456788999999877 7778888888642 348999999988777654 12 01 11111 1112222
Q ss_pred cCCCCCcEE-EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 167 IVPKSTAVR-LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 167 ~~~~~~~~d-~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
... ...+| +++-..+. ...+.++.+.|++||.+++...
T Consensus 223 ~~~-~~~~d~~v~d~~G~---------------~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 223 VLR-ELRFDQLILETAGV---------------PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred Hhc-CCCCCeEEEECCCC---------------HHHHHHHHHHhhcCCEEEEEcc
Confidence 222 22466 44444221 3578889999999999987654
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.12 Score=50.47 Aligned_cols=113 Identities=11% Similarity=0.160 Sum_probs=64.4
Q ss_pred CEEEEecCCCChHHHHHHHhcC---CCCC-----CcEEEEEeCCh---HHHHHHH-----------HHHhh-----cccc
Q 041272 96 DTVVDATCGNGYDTLMMLKMVA---DESS-----AGCVYGLDIQS---EALKSTS-----------SLLDK-----TTSK 148 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~---~~~p-----~~~v~giD~s~---~~i~~a~-----------~~~~~-----~~~~ 148 (267)
-+|+|+|-|+|...+...+... +..| ..+++++|..| +.+..+. +..+. .+..
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 5899999999998777665441 0011 25899999754 2232222 21111 0100
Q ss_pred ---cccc--ceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 149 ---AEKG--LVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 149 ---~~~~--~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
.... ++++..+|..+....+. ..+|+++.|. +-|....... ..++++++.++++|||.+.
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~--~~~d~~~lD~-FsP~~np~~W-----~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLD--ARADAWFLDG-FAPAKNPDMW-----SPNLFNALARLARPGATLA 203 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhcc--ccccEEEeCC-CCCccChhhc-----cHHHHHHHHHHhCCCCEEE
Confidence 0011 34456667665444332 3589999983 2222111111 1689999999999999995
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.15 Score=44.90 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=61.0
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
++.+||-.|||. |..+..+|+..|. .+|++++.+++..+.+++. + .. .++.....++........
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~----~~v~~~~~s~~~~~~~~~~----g----~~--~vi~~~~~~~~~~~~~~~ 230 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA----AEIVATDLADAPLAVARAM----G----AD--ETVNLARDPLAAYAADKG 230 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEECCCHHHHHHHHHc----C----CC--EEEcCCchhhhhhhccCC
Confidence 788999999876 7777888887642 3799999998887766542 1 01 122111111222221222
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+|+++...+. ...++++.+.|+++|+++...
T Consensus 231 ~vd~vld~~g~---------------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 231 DFDVVFEASGA---------------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CccEEEECCCC---------------HHHHHHHHHHHhcCCEEEEEe
Confidence 47888765321 246788899999999997654
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.05 Score=45.35 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=54.0
Q ss_pred CCCEEEEecCCCChHHHHHH-HhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe-cChhhhh-hcCCC
Q 041272 94 KGDTVVDATCGNGYDTLMML-KMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN-MCHSRME-EIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la-~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~~~~~l~-~~~~~ 170 (267)
++.++||||.|---+=-.+- ..+ +.+.+|.|+++.+++.|+.++..|. .+...+++.. .+...+. .....
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-----gwrfvGseid~~sl~sA~~ii~~N~--~l~~~I~lr~qk~~~~if~giig~ 150 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-----GWRFVGSEIDSQSLSSAKAIISANP--GLERAIRLRRQKDSDAIFNGIIGK 150 (292)
T ss_pred CceEEEeeccCcccccccccceee-----cceeecCccCHHHHHHHHHHHHcCc--chhhheeEEeccCccccccccccc
Confidence 56689999988632221111 222 4689999999999999999998872 1445566543 2222222 23344
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
+..||++++|+++
T Consensus 151 nE~yd~tlCNPPF 163 (292)
T COG3129 151 NERYDATLCNPPF 163 (292)
T ss_pred cceeeeEecCCCc
Confidence 5689999999755
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.23 Score=44.36 Aligned_cols=98 Identities=21% Similarity=0.197 Sum_probs=64.3
Q ss_pred hcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec----Ch-hh
Q 041272 91 VVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM----CH-SR 163 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~----~~-~~ 163 (267)
.+++|++||=.|+ | .|..+..+|+..| .+|++++.+++..+.+++.+.. . .++.. +. ..
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G-----~~Vi~~~~~~~k~~~~~~~lGa-------~--~vi~~~~~~~~~~~ 220 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG-----CYVVGSAGSSQKVDLLKNKLGF-------D--EAFNYKEEPDLDAA 220 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC-----CEEEEEcCCHHHHHHHHHhcCC-------C--EEEECCCcccHHHH
Confidence 4678999999998 4 4888899998874 6899999998877776533221 1 11111 11 11
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..... ..+|+++-..+ ...+..+.+.|++||++++...
T Consensus 221 i~~~~~--~gvD~v~d~vG----------------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 221 LKRYFP--EGIDIYFDNVG----------------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred HHHHCC--CCcEEEEECCC----------------HHHHHHHHHHhccCCEEEEECc
Confidence 222222 25788876532 1467888999999999986543
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.11 Score=48.01 Aligned_cols=143 Identities=18% Similarity=0.227 Sum_probs=77.5
Q ss_pred cCCCC--EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 92 VRKGD--TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~--~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
+..+. .|+|...|.|.+++.|.+. .|..+-+.+..-...-..+-+.| +.+ ..++=.+.+..+
T Consensus 361 i~~~~iRNVMDMnAg~GGFAAAL~~~--------~VWVMNVVP~~~~ntL~vIydRG---LIG---~yhDWCE~fsTY-- 424 (506)
T PF03141_consen 361 IKWGRIRNVMDMNAGYGGFAAALIDD--------PVWVMNVVPVSGPNTLPVIYDRG---LIG---VYHDWCEAFSTY-- 424 (506)
T ss_pred ccccceeeeeeecccccHHHHHhccC--------CceEEEecccCCCCcchhhhhcc---cch---hccchhhccCCC--
Confidence 44443 7999999999999999865 24444433331111111111222 111 111111122222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
..++|++-.+--+ +.....-....++-++=|+|+|||.++|-+. ..-...+++.++.+. |....
T Consensus 425 -PRTYDLlHA~~lf------s~~~~rC~~~~illEmDRILRP~G~~iiRD~------~~vl~~v~~i~~~lr---W~~~~ 488 (506)
T PF03141_consen 425 -PRTYDLLHADGLF------SLYKDRCEMEDILLEMDRILRPGGWVIIRDT------VDVLEKVKKIAKSLR---WEVRI 488 (506)
T ss_pred -Ccchhheehhhhh------hhhcccccHHHHHHHhHhhcCCCceEEEecc------HHHHHHHHHHHHhCc---ceEEE
Confidence 2368888766211 0011223457889999999999999988664 223455666666654 66655
Q ss_pred EeeecCC-CCceEEEeec
Q 041272 250 FQMLNRP-LAPVLVFLFK 266 (267)
Q Consensus 250 ~~~~~~~-~~p~~~~~~k 266 (267)
+...+.+ ....+++.+|
T Consensus 489 ~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 489 HDTEDGPDGPEKILICQK 506 (506)
T ss_pred EecCCCCCCCceEEEEEC
Confidence 5555543 3556666655
|
; GO: 0008168 methyltransferase activity |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.26 Score=43.11 Aligned_cols=104 Identities=19% Similarity=0.203 Sum_probs=70.1
Q ss_pred HHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----
Q 041272 87 VWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC----- 160 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~----- 160 (267)
+....+++|++|.-+|+|. |.....-|+..|. .+++|||++++-.+.|++- .--++++-.
T Consensus 185 ~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GA----srIIgvDiN~~Kf~~ak~f----------GaTe~iNp~d~~~~ 250 (375)
T KOG0022|consen 185 WNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGA----SRIIGVDINPDKFEKAKEF----------GATEFINPKDLKKP 250 (375)
T ss_pred hhhcccCCCCEEEEEecchHHHHHHHhHHhcCc----ccEEEEecCHHHHHHHHhc----------CcceecChhhcccc
Confidence 3344678999999999998 7666777777664 8999999999999998873 223333211
Q ss_pred -hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEec
Q 041272 161 -HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVYV 221 (267)
Q Consensus 161 -~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~ 221 (267)
.+-+.+.. +..+|+.+-..+. .+.+++++...+.| |.-+++-..
T Consensus 251 i~evi~EmT--dgGvDysfEc~G~---------------~~~m~~al~s~h~GwG~sv~iGv~ 296 (375)
T KOG0022|consen 251 IQEVIIEMT--DGGVDYSFECIGN---------------VSTMRAALESCHKGWGKSVVIGVA 296 (375)
T ss_pred HHHHHHHHh--cCCceEEEEecCC---------------HHHHHHHHHHhhcCCCeEEEEEec
Confidence 11122222 3457776655433 47888888888888 887776543
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.12 Score=43.11 Aligned_cols=125 Identities=17% Similarity=0.134 Sum_probs=74.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCC-C----cEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh----
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESS-A----GCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM---- 164 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p-~----~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l---- 164 (267)
.-.+|+|+...+|.++..|++++-.+-+ . .++++||+.+-+ ....|.-+++|....
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma---------------PI~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA---------------PIEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC---------------ccCceEEeecccCCHhHHH
Confidence 3468999999999999999987643111 1 139999987632 122333344433322
Q ss_pred --hhcCCCCCcEEEEEEeCCCCCCCCCceeechhh------HHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHH
Q 041272 165 --EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET------TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAF 236 (267)
Q Consensus 165 --~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 236 (267)
.+.+. +.+.|+|+++= .+|-.-+|..+. ...+|.-...+|||||.|+--.+.+...+ .-...+..|
T Consensus 106 ~Ii~hfg-gekAdlVvcDG----APDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~ts-lLysql~~f 179 (294)
T KOG1099|consen 106 AIIEHFG-GEKADLVVCDG----APDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTS-LLYSQLRKF 179 (294)
T ss_pred HHHHHhC-CCCccEEEeCC----CCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchH-HHHHHHHHH
Confidence 22222 34789999982 122222343322 35566777889999999987777554422 234455566
Q ss_pred HHh
Q 041272 237 ARS 239 (267)
Q Consensus 237 ~~~ 239 (267)
+..
T Consensus 180 f~k 182 (294)
T KOG1099|consen 180 FKK 182 (294)
T ss_pred hhc
Confidence 553
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.015 Score=42.46 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=26.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ 131 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s 131 (267)
+....+|||||+|.+.-.|.+. +-.-+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E------Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE------GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC------CCCccccccc
Confidence 4568999999999999888876 4677899963
|
; GO: 0008168 methyltransferase activity |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.1 Score=45.80 Aligned_cols=132 Identities=12% Similarity=-0.017 Sum_probs=69.6
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEE
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL 176 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ 176 (267)
+++|+.||-|.++..+.+.- -..|.++|+++.+++.-+.|.. ....+|..++.....+. ++|+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-----~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~-~~D~ 64 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-----FEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPK-DVDL 64 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-----EEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHH-T-SE
T ss_pred cEEEEccCccHHHHHHHhcC-----cEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccc-cceE
Confidence 79999999999999988762 2467899999998888877653 33444444333221111 4899
Q ss_pred EEEeCCCCCCCCCceee---ch-h-hHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEE
Q 041272 177 VAFNLGYLPGGDKSVIT---TS-E-TTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 177 ii~~~~~lp~~d~~~~~---~~-~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (267)
++..++.=+++...... .. . -..+++ ++.+.++|.-+++ .....-........+..+.+.+..-+|.+.
T Consensus 65 l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~-~~v~~~~Pk~~~~--ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~ 138 (335)
T PF00145_consen 65 LIGGPPCQGFSIAGKRKGFDDPRNSLFFEFL-RIVKELKPKYFLL--ENVPGLLSSKNGEVFKEILEELEELGYNVQ 138 (335)
T ss_dssp EEEE---TTTSTTSTHHCCCCHTTSHHHHHH-HHHHHHS-SEEEE--EEEGGGGTGGGHHHHHHHHHHHHHTTEEEE
T ss_pred EEeccCCceEeccccccccccccchhhHHHH-HHHhhccceEEEe--cccceeeccccccccccccccccccceeeh
Confidence 99998764443222111 11 1 122333 3445568865443 332222122222444555555555567653
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.093 Score=45.79 Aligned_cols=98 Identities=8% Similarity=0.081 Sum_probs=58.2
Q ss_pred HHHHhhHHHhhhcCCCCEE---EEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE
Q 041272 80 ITIAANGVWKHVVRKGDTV---VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL 156 (267)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~V---LDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~ 156 (267)
-..+.+.++...-....++ +|||+|.-.+--.+-.+. -+...+++|++...+..|+.|..+++ +...+.+
T Consensus 85 YihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq----~n~~f~~teidd~s~~~a~snV~qn~---lss~ikv 157 (419)
T KOG2912|consen 85 YIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQ----NNWYFLATEIDDMSFNYAKSNVEQNN---LSSLIKV 157 (419)
T ss_pred hHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchh----ccceeeeeeccccccchhhccccccc---cccceee
Confidence 3445566655442222333 688877643322222221 13678999999999999999999988 4566666
Q ss_pred EecCh-h-hhhhcC--CCCCcEEEEEEeCCCC
Q 041272 157 FNMCH-S-RMEEIV--PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 157 ~~~~~-~-~l~~~~--~~~~~~d~ii~~~~~l 184 (267)
++-.. . .+.+.. ..+..||++++|+++.
T Consensus 158 V~~~~~ktll~d~~~~~~e~~ydFcMcNPPFf 189 (419)
T KOG2912|consen 158 VKVEPQKTLLMDALKEESEIIYDFCMCNPPFF 189 (419)
T ss_pred EEecchhhcchhhhccCccceeeEEecCCchh
Confidence 55321 1 111211 1134699999998763
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.58 Score=41.04 Aligned_cols=98 Identities=16% Similarity=0.042 Sum_probs=62.7
Q ss_pred hhcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC----hhh
Q 041272 90 HVVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC----HSR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~----~~~ 163 (267)
..+++|++||=.|. | .|..+..+|+..| .+|++++.+++..+.+++ .+ ... ++... ...
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G-----~~Vi~~~~s~~~~~~~~~----lG----a~~--vi~~~~~~~~~~ 198 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKG-----CKVVGAAGSDEKVAYLKK----LG----FDV--AFNYKTVKSLEE 198 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHH----cC----CCE--EEeccccccHHH
Confidence 34678999998884 3 4888888998864 689999999888777754 22 111 11111 111
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...... ...+|+++-..+- ..+..+.+.|++||+++...
T Consensus 199 ~~~~~~-~~gvdvv~d~~G~----------------~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 199 TLKKAS-PDGYDCYFDNVGG----------------EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred HHHHhC-CCCeEEEEECCCH----------------HHHHHHHHHhCcCcEEEEec
Confidence 111111 2358888765321 45688899999999998653
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.37 Score=42.82 Aligned_cols=101 Identities=20% Similarity=0.280 Sum_probs=64.3
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRM 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l 164 (267)
..++++.+||-.|+|. |..+..+|+..|. ..|+++|.+++..+.+++ .+ .. .++.... ..+
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~----~~v~~~~~~~~~~~~~~~----~g----~~--~~v~~~~~~~~~~i 227 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGA----GRIIAVGSRPNRVELAKE----YG----AT--DIVDYKNGDVVEQI 227 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHH----cC----Cc--eEecCCCCCHHHHH
Confidence 3467889999998875 7777888888653 479999999988777765 22 11 1111111 112
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.... ....+|+++...+. ...+..+.+.|+++|+++....
T Consensus 228 ~~~~-~~~~~d~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 228 LKLT-GGKGVDAVIIAGGG---------------QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred HHHh-CCCCCcEEEECCCC---------------HHHHHHHHHHhhcCCEEEEecc
Confidence 2222 22357877765321 2577889999999999876543
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.33 Score=44.20 Aligned_cols=116 Identities=17% Similarity=0.142 Sum_probs=68.4
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec---Ch-hhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM---CH-SRM 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~---~~-~~l 164 (267)
..+.++++||=.|+|. |..+..+|+..+. ..|+.+|.+++.++.|++. + . . .+... +. ..+
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga----~~vi~~d~~~~r~~~a~~~----G----a-~-~v~~~~~~~~~~~v 246 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGA----AVVIVGDLNPARLAQARSF----G----C-E-TVDLSKDATLPEQI 246 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----ceEEEeCCCHHHHHHHHHc----C----C-e-EEecCCcccHHHHH
Confidence 3467888888888887 7777888888653 4567788988888887762 2 1 1 11111 11 122
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+... ...+|+++-..+.-.. +....-........++++.+.+++||.++++..+
T Consensus 247 ~~~~~-~~g~Dvvid~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 247 EQILG-EPEVDCAVDCVGFEAR-GHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred HHHcC-CCCCcEEEECCCCccc-cccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 22222 2357888876543110 0000000012235789999999999999887664
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.093 Score=48.33 Aligned_cols=119 Identities=12% Similarity=0.147 Sum_probs=79.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE-EecChhhhhh---cC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL-FNMCHSRMEE---IV 168 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~-~~~~~~~l~~---~~ 168 (267)
.-+.++|-+|-|.|.+...+-..++ ...+++|+++|+|++.|+++..-.. ..+..+ +.+....+.. .-
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p----~~~i~~ve~dP~~l~va~q~f~f~q----~~r~~V~i~dGl~~~~~~~k~~ 365 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLP----KFQITAVEIDPEMLEVATQYFGFMQ----SDRNKVHIADGLDFLQRTAKSQ 365 (482)
T ss_pred cccCcEEEEecCCCccccceeeecC----ccceeEEEEChhHhhccHhhhchhh----hhhhhhhHhhchHHHHHHhhcc
Confidence 3456899999999999988887765 4899999999999999999876543 112222 2222223333 22
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechh---hHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSE---TTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.++..+|+++.+. ...|..-...++ -...++..+...|.|.|.+.+.....
T Consensus 366 ~~~~~~dvl~~dv---ds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 366 QEDICPDVLMVDV---DSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred ccccCCcEEEEEC---CCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 3556799999984 222211112222 13678889999999999998876543
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.21 Score=42.00 Aligned_cols=100 Identities=23% Similarity=0.234 Sum_probs=62.0
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhcCC
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~ 169 (267)
+.++.+||..|+|+ |..+..+++.. +.+|++++.+++..+.+++.-.. .-+.....+. ..+. ..
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~-----g~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~--~~ 197 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAA-----GARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELR--LT 197 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-----CCeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHH--Hh
Confidence 36789999999996 77777778775 36899999998877776542110 0011000000 1111 11
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|+++.+.+. ...+..+.+.|+++|.++....
T Consensus 198 ~~~~~d~vi~~~~~---------------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 198 GGGGADVVIDAVGG---------------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred cCCCCCEEEECCCC---------------HHHHHHHHHhcccCCEEEEEcc
Confidence 22358888876321 1467778889999999976554
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.6 Score=35.60 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=83.1
Q ss_pred CCEEEEecCCCChHHHHHHHh---cCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-----
Q 041272 95 GDTVVDATCGNGYDTLMMLKM---VADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE----- 166 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~---~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~----- 166 (267)
...|+|+|.-.|..++..|.. .|+ ..+|+++|++-..++-+... .+++.|+.++..+..-
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq---~~kvl~vdIdi~~~~p~a~e---------~p~i~f~egss~dpai~eqi~ 137 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQ---PFKVLGVDIDIKPLDPAARE---------VPDILFIEGSSTDPAIAEQIR 137 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCC---CceEEEEecccCcCChhhhc---------CCCeEEEeCCCCCHHHHHHHH
Confidence 358999999999888777753 343 37999999997665544331 3678888876654422
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec--CCC-------CChhhHHHHHHHH
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV--GHP-------GGREELEAVEAFA 237 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~--~~~-------~~~~~~~~~~~~~ 237 (267)
......+--+++.+ ..|+.+...+.++-..++|.-|-++++.+-. +++ -+....++++.|+
T Consensus 138 ~~~~~y~kIfvilD----------sdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~yl 207 (237)
T COG3510 138 RLKNEYPKIFVILD----------SDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYL 207 (237)
T ss_pred HHhcCCCcEEEEec----------CCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHH
Confidence 12222344455655 3555666678888888999999999875431 122 1223467889999
Q ss_pred HhCCC
Q 041272 238 RSLSV 242 (267)
Q Consensus 238 ~~l~~ 242 (267)
+..++
T Consensus 208 r~~p~ 212 (237)
T COG3510 208 REFPQ 212 (237)
T ss_pred HhCCc
Confidence 88774
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.53 Score=41.60 Aligned_cols=71 Identities=14% Similarity=0.021 Sum_probs=47.1
Q ss_pred EEEecCCCChHHHHHHHhcCCCCCCcE-EEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEE
Q 041272 98 VVDATCGNGYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL 176 (267)
Q Consensus 98 VLDlGcG~G~~~~~la~~~~~~~p~~~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ 176 (267)
|+|+.||.|.++.-+.+. +.+ +.++|+++.+++.-+.|... .++.+|..++..... .++|+
T Consensus 1 vidLF~G~GG~~~Gl~~a------G~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~~--~~~dv 62 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA------GFKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSDI--PDFDI 62 (315)
T ss_pred CEEEecCccHHHHHHHHc------CCeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhhC--CCcCE
Confidence 689999999999888765 344 56899999998888776532 223344444332111 25899
Q ss_pred EEEeCCCCCC
Q 041272 177 VAFNLGYLPG 186 (267)
Q Consensus 177 ii~~~~~lp~ 186 (267)
++..++.=++
T Consensus 63 l~gg~PCq~f 72 (315)
T TIGR00675 63 LLGGFPCQPF 72 (315)
T ss_pred EEecCCCccc
Confidence 9988765333
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.83 Score=38.69 Aligned_cols=115 Identities=19% Similarity=0.197 Sum_probs=70.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE--EecChhhhhhcCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL--FNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~ 169 (267)
+..+...+|+|+|+..-+..|...+.+...-.+++.||+|...++...+.+.... ..+++ +.++..--...++
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y-----~~l~v~~l~~~~~~~La~~~ 150 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY-----PGLEVNALCGDYELALAELP 150 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC-----CCCeEeehhhhHHHHHhccc
Confidence 3457799999999999998888766432223689999999998876665554432 33443 3333332222222
Q ss_pred CCCcEEEEEEeCCCCCCCCCcee-echhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVI-TTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
. +.--+++ -++. ++- ..+.....++.++...|+||-.+++-+
T Consensus 151 ~-~~~Rl~~-flGS------tlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 151 R-GGRRLFV-FLGS------TLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred C-CCeEEEE-Eecc------cccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 2 2222221 1111 111 135666789999999999999988744
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.033 Score=50.29 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=57.7
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccccc-ceEEEecChhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG-LVKLFNMCHSR 163 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~-~v~~~~~~~~~ 163 (267)
|+-+....++|..|-|+.||.|-+++.+++. ++.|++-|.+++++++-+.|++.+. ..+ +++.+..++.+
T Consensus 240 herlsg~fk~gevv~D~FaGvGPfa~Pa~kK------~crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 240 HERLSGLFKPGEVVCDVFAGVGPFALPAAKK------GCRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAKD 310 (495)
T ss_pred HHHHhhccCCcchhhhhhcCcCccccchhhc------CcEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHHH
Confidence 3333346789999999999999999999987 5899999999999999999998876 333 37777666654
Q ss_pred hh
Q 041272 164 ME 165 (267)
Q Consensus 164 l~ 165 (267)
..
T Consensus 311 Fl 312 (495)
T KOG2078|consen 311 FL 312 (495)
T ss_pred Hh
Confidence 43
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.21 Score=44.96 Aligned_cols=103 Identities=19% Similarity=0.180 Sum_probs=64.3
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe--cCh-hhhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN--MCH-SRME 165 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~--~~~-~~l~ 165 (267)
..++++++||=.|+|. |..+..+|+..+. .+|+++|.+++..+.+++. +. ..-+.... .+. ..+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~----~~Vi~~~~~~~~~~~a~~~----Ga---~~~i~~~~~~~~~~~~v~ 249 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKA----SRIIAIDINPAKFELAKKL----GA---TDCVNPNDYDKPIQEVIV 249 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHHh----CC---CeEEcccccchhHHHHHH
Confidence 3467899999999877 7788888888642 3799999999988888652 20 00011000 000 1122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
+... . .+|+++-..+. ...+.++.+.+++| |++++...
T Consensus 250 ~~~~-~-g~d~vid~~G~---------------~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 250 EITD-G-GVDYSFECIGN---------------VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred HHhC-C-CCCEEEECCCC---------------HHHHHHHHHHhhcCCCeEEEEec
Confidence 2221 2 47777765321 25678888899886 98877654
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.2 Score=45.94 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=59.6
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
-+|++|+=+|+|. |.....+++..| ++|+.+|.++...+.|++ .| +..+. . .+..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G-----a~ViV~d~d~~R~~~A~~----~G-------~~~~~--~---~e~v--- 255 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG-----ARVIVTEVDPICALQAAM----EG-------YEVMT--M---EEAV--- 255 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-----CEEEEEECChhhHHHHHh----cC-------CEEcc--H---HHHH---
Confidence 4789999999998 777777777764 589999999988777765 22 11111 1 1111
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHH-HhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA-ERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~-~~~LkpgG~l~i~~~ 220 (267)
...|+++...+. ..++... .+.+|+||+++.+..
T Consensus 256 ~~aDVVI~atG~---------------~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 256 KEGDIFVTTTGN---------------KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred cCCCEEEECCCC---------------HHHHHHHHHhcCCCCcEEEEeCC
Confidence 135777765321 3456554 889999999976653
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.2 Score=46.62 Aligned_cols=106 Identities=14% Similarity=0.200 Sum_probs=71.3
Q ss_pred EEEEecCCCChHH---HHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 97 TVVDATCGNGYDT---LMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 97 ~VLDlGcG~G~~~---~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.|+=+|.|.|-+. +..|+.... ..++++||-+|.++-.-+.. +-. .+..+|+++-.|..++. ++..+
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~R---kVklyavEKNPNAivtL~~~-n~~---~W~~~Vtii~~DMR~w~---ap~eq 439 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDR---KVKLYAVEKNPNAIVTLQNR-NFE---CWDNRVTIISSDMRKWN---APREQ 439 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcC---ceEEEEEecCcchhhhhhhh-chh---hhcCeeEEEeccccccC---Cchhh
Confidence 6888999999665 344444332 47899999999998766552 221 24688999976655444 33457
Q ss_pred EEEEEEeC-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNL-GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.|++++-+ |..-+. +-..+.|..+-+.|||.|+.+=..+
T Consensus 440 ~DI~VSELLGSFGDN--------ELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 440 ADIIVSELLGSFGDN--------ELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred ccchHHHhhccccCc--------cCCHHHHHHHHhhcCCCceEccchh
Confidence 89988763 322222 2236899999999999998754333
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.39 Score=43.94 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=63.6
Q ss_pred hcCCCCEEEEec-CCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc----cccccccceEEEecCh-hh
Q 041272 91 VVRKGDTVVDAT-CGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT----TSKAEKGLVKLFNMCH-SR 163 (267)
Q Consensus 91 ~l~~~~~VLDlG-cG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~----~~~~~~~~v~~~~~~~-~~ 163 (267)
.++++++||=+| +|. |..+..+|+..+. +..+|+++|.+++.++.+++..... + ....++.... .+
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~--g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~G-----a~~~~i~~~~~~~ 244 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPI--GPSLLVVTDVNDERLARAQRLFPPEAASRG-----IELLYVNPATIDD 244 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhccc--CCceEEEEcCCHHHHHHHHHhccccccccC-----ceEEEECCCcccc
Confidence 467888999897 565 8888888887532 1247999999999999988742210 1 0111221100 11
Q ss_pred ----hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 164 ----MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 164 ----l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
+.+.. ....+|+++...+. ...+..+.+.++++|.+++.
T Consensus 245 ~~~~v~~~t-~g~g~D~vid~~g~---------------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 245 LHATLMELT-GGQGFDDVFVFVPV---------------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHHHHHHh-CCCCCCEEEEcCCC---------------HHHHHHHHHHhccCCeEEEE
Confidence 12221 22347777665321 35778889999988876554
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.6 Score=41.85 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=63.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----h-h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----H-S 162 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~-~ 162 (267)
..++++++||=.|+|. |..+..+|+..|. .+|+++|.+++..+.+++ .+ . ..++... . .
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~----~~vi~~~~~~~~~~~~~~----~G----a--~~~i~~~~~~~~~~~ 248 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGA----SRIIGVDLNPSKFEQAKK----FG----V--TEFVNPKDHDKPVQE 248 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHH----cC----C--ceEEcccccchhHHH
Confidence 3467899999999876 7777778887642 489999999988887754 22 0 1111111 0 1
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
.+..... . .+|+++-..+. ...+..+.+.+++| |++++...
T Consensus 249 ~v~~~~~-~-~~d~vid~~G~---------------~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 249 VIAEMTG-G-GVDYSFECTGN---------------IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred HHHHHhC-C-CCCEEEECCCC---------------hHHHHHHHHHhhcCCCEEEEECc
Confidence 1222221 2 47777765321 25677788889996 98877654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.33 Score=43.52 Aligned_cols=97 Identities=12% Similarity=0.058 Sum_probs=58.8
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-ChhhhhhcCC
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~ 169 (267)
++++++||-.|+|. |..+..+|+..+ .+|++++.+++....+.+ +.+ .. .++.. +...+....
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G-----a~vi~~~~~~~~~~~~~~---~~G----a~--~vi~~~~~~~~~~~~- 245 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG-----LKVTVISSSSNKEDEAIN---RLG----AD--SFLVSTDPEKMKAAI- 245 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC-----CEEEEEeCCcchhhhHHH---hCC----Cc--EEEcCCCHHHHHhhc-
Confidence 46788999999987 888888888864 578888887654332222 222 11 11111 111222222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+|+++-..+. ...++++.+.|++||.++....
T Consensus 246 --~~~D~vid~~g~---------------~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 246 --GTMDYIIDTVSA---------------VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --CCCCEEEECCCC---------------HHHHHHHHHHhcCCcEEEEeCC
Confidence 136777755321 2467888999999999986643
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.43 Score=41.86 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=65.6
Q ss_pred HHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-hhhh
Q 041272 87 VWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-HSRM 164 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-~~~l 164 (267)
+....+.||++|-=+|-|. |.++..+|+.+| .+|++||-+...-+.|-+++.+. .|+... ..++
T Consensus 174 Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG-----~rV~vis~~~~kkeea~~~LGAd---------~fv~~~~d~d~ 239 (360)
T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMG-----MRVTVISTSSKKKEEAIKSLGAD---------VFVDSTEDPDI 239 (360)
T ss_pred hHHcCCCCCcEEEEecCcccchHHHHHHHHhC-----cEEEEEeCCchhHHHHHHhcCcc---------eeEEecCCHHH
Confidence 3344567999988888776 999999999985 69999999986655555544331 122111 1222
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.+.... ..|.++-....+ ....+..+.++||++|.++++..+.
T Consensus 240 ~~~~~~--~~dg~~~~v~~~-------------a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 240 MKAIMK--TTDGGIDTVSNL-------------AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred HHHHHH--hhcCcceeeeec-------------cccchHHHHHHhhcCCEEEEEeCcC
Confidence 221111 223332221000 1357788999999999999876654
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.33 Score=42.88 Aligned_cols=98 Identities=20% Similarity=0.327 Sum_probs=60.8
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----hhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----RME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~l~ 165 (267)
.++++.+||..|+|. |..+..+|+..+. ..|++++.++...+.+++. + .. .++..... .+.
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~----~~v~~~~~~~~~~~~~~~~----g----~~--~vi~~~~~~~~~~i~ 229 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGA----ARIIAVDSNPERLDLAKEA----G----AT--DIINPKNGDIVEQIL 229 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEEeCCHHHHHHHHHh----C----Cc--EEEcCCcchHHHHHH
Confidence 456788999988764 7777888887642 4789998888777766542 1 01 11111111 122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
... .+..+|+++...+. ...+..+.+.|+++|+++..
T Consensus 230 ~~~-~~~~~d~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 230 ELT-GGRGVDCVIEAVGF---------------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred HHc-CCCCCcEEEEccCC---------------HHHHHHHHHHhhcCCEEEEE
Confidence 222 22358887765211 24788888999999998754
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.5 Score=42.41 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=63.9
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----h-h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----H-S 162 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~-~ 162 (267)
..++++++||=.|+|. |..+..+|+..|. .+|+++|.+++..+.+++ .+ .. .++... . .
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~----~~vi~~~~~~~~~~~~~~----lG----a~--~~i~~~~~~~~~~~ 247 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGA----SRIIGIDINPDKFELAKK----FG----AT--DCVNPKDHDKPIQQ 247 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHH----cC----CC--EEEcccccchHHHH
Confidence 3467899999999876 7777888887642 379999999998887754 22 11 111111 1 1
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
.+.+... . .+|+++-..+. ...+..+.+.|+++ |++++...
T Consensus 248 ~v~~~~~-~-g~d~vid~~g~---------------~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 248 VLVEMTD-G-GVDYTFECIGN---------------VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred HHHHHhC-C-CCcEEEECCCC---------------hHHHHHHHHhhccCCCeEEEEcc
Confidence 1222221 2 57888766321 25778888999987 98877654
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.096 Score=45.53 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=43.1
Q ss_pred cceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCC-ceee------chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDK-SVIT------TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 152 ~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~-~~~~------~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+..++++|..+....++ +.++|+|+.|++|--..+. .... ...-....+.++.++|||||.+++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~-~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIP-SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcc-cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 345677777776554443 3489999999988321110 0000 01123578899999999999998854
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.38 Score=42.78 Aligned_cols=135 Identities=10% Similarity=-0.027 Sum_probs=73.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
..+++|+-||-|.+..-+.... -.-+.++|+++.+++.-+.|... -.++..+...+........++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-----f~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~ 68 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-----FEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDV 68 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-----CeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCC
Confidence 3589999999999998887751 13577899999998887776542 223333333222211111168
Q ss_pred EEEEEeCCCCCCCCCceeechhhH----HHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceE
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETT----KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (267)
|+++..++.=+++-...-....+. ---+.++...++| .+++......-... ....++.+.+.|...+|.
T Consensus 69 DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~-~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 69 DVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS-KGQTFDEIKKELEELGYG 141 (328)
T ss_pred CEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc-CchHHHHHHHHHHHcCCc
Confidence 999999766433321111111111 1234455666788 34344432211010 123455556666666664
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.64 Score=41.66 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=63.1
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccce-EEEecC---hhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV-KLFNMC---HSRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v-~~~~~~---~~~l~ 165 (267)
.++++.+||=.|+|. |..+..+|+..|. .+|+++|.+++..+.+++ + + ...+ .....+ ...+.
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~----~~Vi~~~~~~~~~~~~~~-~---g----a~~~i~~~~~~~~~~~~~~ 248 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGA----SRIIGVDINEDKFEKAKE-F---G----ATDFINPKDSDKPVSEVIR 248 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHH-c---C----CCcEeccccccchHHHHHH
Confidence 467899999999876 7777888888642 379999999988887754 2 2 1111 100000 11122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
+... ..+|+++-..+. ...+..+.+.|+++ |.+++...
T Consensus 249 ~~~~--~g~d~vid~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 249 EMTG--GGVDYSFECTGN---------------ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred HHhC--CCCCEEEECCCC---------------hHHHHHHHHhcccCCCEEEEEcC
Confidence 2222 257888765321 25678888899886 98877654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.53 Score=41.51 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=60.6
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
.+.++.+||=.|+|. |..+..+|+..| .+|+.++.+++..+.+++ + + .. .++.....++...+.
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G-----~~vi~~~~~~~~~~~~~~-~---g----~~--~~i~~~~~~~~~~~~ 224 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMG-----FRTVAISRGSDKADLARK-L---G----AH--HYIDTSKEDVAEALQ 224 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC-----CeEEEEeCChHHHHHHHH-c---C----Cc--EEecCCCccHHHHHH
Confidence 466788999999766 777777888764 589999999887777754 1 2 01 111111111111110
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
....+|+++...+. ...+..+.+.|+++|.++...
T Consensus 225 ~~~~~d~vi~~~g~---------------~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 225 ELGGAKLILATAPN---------------AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred hcCCCCEEEECCCc---------------hHHHHHHHHHcccCCEEEEEe
Confidence 01136777654211 257788899999999997654
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.3 Score=47.03 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=65.7
Q ss_pred EEEEecCCCChHHHH---HHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh-ccccc----cccceEEEecChhhhhhcC
Q 041272 97 TVVDATCGNGYDTLM---MLKMVADESSAGCVYGLDIQSEALKSTSSLLDK-TTSKA----EKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~---la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~-~~~~~----~~~~v~~~~~~~~~l~~~~ 168 (267)
.|+=+|+|-|-+... +++..+. ..+|++||.++..+.....+... ..+.. ...+|+++..|...+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gv---kVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe 779 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGV---RLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAA 779 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCC---cEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccc
Confidence 589999999976543 4444443 46899999997755555554322 11100 0245899987777663211
Q ss_pred --------CCCCcEEEEEEeC-CCCCCCCCceeechhhHHHHHHHHHhcccC----CcE
Q 041272 169 --------PKSTAVRLVAFNL-GYLPGGDKSVITTSETTKMALEAAERILIP----GGL 214 (267)
Q Consensus 169 --------~~~~~~d~ii~~~-~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkp----gG~ 214 (267)
...+++|++|+-+ |.+-+. +-..+.|..+.+.||+ +|+
T Consensus 780 ~~~s~~~P~~~gKaDIVVSELLGSFGDN--------ELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 780 ENGSLTLPADFGLCDLIVSELLGSLGDN--------ELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccccceehHhhhcccccc--------cCCHHHHHHHHHhhhhhcccccc
Confidence 1113689998863 322222 2225888888888887 786
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.7 Score=41.91 Aligned_cols=126 Identities=16% Similarity=0.166 Sum_probs=63.0
Q ss_pred CCEEEEecCCCChHHHHHHHhc-----------CCCCCCcEEEEEeCChHHHHHHHHHHhhccc---------cccccce
Q 041272 95 GDTVVDATCGNGYDTLMMLKMV-----------ADESSAGCVYGLDIQSEALKSTSSLLDKTTS---------KAEKGLV 154 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~-----------~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~---------~~~~~~v 154 (267)
..+|+|+|||+|..++.+...+ +.+-|..+|+.-|.-..--...=+.+..... .....+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 4589999999998886654321 1111345677666553322222222211000 0000112
Q ss_pred EEEecChhhhhhcCCCCCcEEEEEEe--CCCCCCCCCcee--------------e--ch-----------hhHHHHHHHH
Q 041272 155 KLFNMCHSRMEEIVPKSTAVRLVAFN--LGYLPGGDKSVI--------------T--TS-----------ETTKMALEAA 205 (267)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~d~ii~~--~~~lp~~d~~~~--------------~--~~-----------~~~~~~l~~~ 205 (267)
-|+.+.......-+.+..+++++.+. ++++......+. + .+ .+...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555545555688888665 455432111111 0 01 1123344444
Q ss_pred HhcccCCcEEEEEEe
Q 041272 206 ERILIPGGLISMVVY 220 (267)
Q Consensus 206 ~~~LkpgG~l~i~~~ 220 (267)
.+-|.|||+++++..
T Consensus 224 a~ELvpGG~mvl~~~ 238 (386)
T PLN02668 224 AQEMKRGGAMFLVCL 238 (386)
T ss_pred HHHhccCcEEEEEEe
Confidence 566899999998765
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.077 Score=47.35 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=36.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHH
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSL 141 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~ 141 (267)
+-+.|+|+|.|.|+++..++-.+ +..|++||-|....+.|++-
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y-----~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY-----GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc-----CceEEEeccchHHHHHHHHH
Confidence 45699999999999999999776 46999999998877766553
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.49 Score=41.82 Aligned_cols=99 Identities=18% Similarity=0.120 Sum_probs=63.8
Q ss_pred hcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccce-EEEec-Chh-hhh
Q 041272 91 VVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV-KLFNM-CHS-RME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v-~~~~~-~~~-~l~ 165 (267)
.+++|++||=.|+ | .|..+..+|+..| .+|++++.+++..+.+++.+.. ..+ ..-.. +.. .+.
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G-----~~Vi~~~~~~~~~~~~~~~lGa-------~~vi~~~~~~~~~~~i~ 215 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKG-----CYVVGSAGSDEKVDLLKNKLGF-------DDAFNYKEEPDLDAALK 215 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHhcCC-------ceeEEcCCcccHHHHHH
Confidence 4678999999997 3 4788888998864 6899999998887777653321 111 10000 111 122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.... ..+|+++-..+ ...+..+.+.|+++|.++...
T Consensus 216 ~~~~--~gvd~v~d~~g----------------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 216 RYFP--NGIDIYFDNVG----------------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred HhCC--CCcEEEEECCC----------------HHHHHHHHHHhccCcEEEEec
Confidence 2222 35888876532 156788899999999997654
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.48 Score=41.85 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=61.5
Q ss_pred cCCC--CEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----
Q 041272 92 VRKG--DTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR---- 163 (267)
Q Consensus 92 l~~~--~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~---- 163 (267)
++++ ++||=.|. |.|..+..+|+..|. .+|++++.+++..+.+++.+.. .. ++.....+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~----~~Vi~~~~s~~~~~~~~~~lGa-------~~--vi~~~~~~~~~~ 216 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGC----SRVVGICGSDEKCQLLKSELGF-------DA--AINYKTDNVAER 216 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHHhcCC-------cE--EEECCCCCHHHH
Confidence 5555 89998886 348888889988642 3799999998877777653321 11 12111112
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.+... ..+|+++...+. ..+.++.+.|+++|+++...
T Consensus 217 i~~~~~--~gvd~vid~~g~----------------~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 217 LRELCP--EGVDVYFDNVGG----------------EISDTVISQMNENSHIILCG 254 (345)
T ss_pred HHHHCC--CCceEEEECCCc----------------HHHHHHHHHhccCCEEEEEe
Confidence 222222 358888865321 34578889999999997653
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.68 Score=40.46 Aligned_cols=96 Identities=17% Similarity=0.101 Sum_probs=62.3
Q ss_pred hcCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----h
Q 041272 91 VVRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----M 164 (267)
Q Consensus 91 ~l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l 164 (267)
.+++|.+||=.|. |.|..+..+|+..| .+|++++.+++..+.+++ + + .. .++.....+ +
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G-----~~vi~~~~s~~~~~~l~~-~---G----a~--~vi~~~~~~~~~~v 204 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKG-----CKVIGCAGSDDKVAWLKE-L---G----FD--AVFNYKTVSLEEAL 204 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHH-c---C----CC--EEEeCCCccHHHHH
Confidence 4678899998884 33888888998864 689999999988777765 2 2 11 112111112 2
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..... ..+|+++-..+ ...++.+.+.|+++|+++...
T Consensus 205 ~~~~~--~gvd~vld~~g----------------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 205 KEAAP--DGIDCYFDNVG----------------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HHHCC--CCcEEEEECCC----------------HHHHHHHHHhhccCCEEEEEc
Confidence 22222 35888776532 156788899999999997643
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.59 Score=41.51 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=65.3
Q ss_pred hhcCCCCEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-hhhh
Q 041272 90 HVVRKGDTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-RMEE 166 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-~l~~ 166 (267)
..+++|++||=.|... |.++..||+..+ +.++++--+++-.+.+++.-.. .-+.+...+.. .+.+
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G-----~~~v~~~~s~~k~~~~~~lGAd-------~vi~y~~~~~~~~v~~ 205 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG-----ATVVAVVSSSEKLELLKELGAD-------HVINYREEDFVEQVRE 205 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC-----CcEEEEecCHHHHHHHHhcCCC-------EEEcCCcccHHHHHHH
Confidence 3477899999998433 788999999874 3677777777666555442221 11222222122 2222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.. ....+|+++-..+ ...+.+..+.|+++|+++.....+
T Consensus 206 ~t-~g~gvDvv~D~vG----------------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 206 LT-GGKGVDVVLDTVG----------------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred Hc-CCCCceEEEECCC----------------HHHHHHHHHHhccCCEEEEEecCC
Confidence 22 2336898887743 267788899999999998766543
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.33 Score=43.64 Aligned_cols=146 Identities=10% Similarity=0.002 Sum_probs=85.9
Q ss_pred HHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-------cccccccce
Q 041272 82 IAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-------TSKAEKGLV 154 (267)
Q Consensus 82 ~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-------~~~~~~~~v 154 (267)
+.....-+..+.+++.-.|+|.|.|.....+|...+. .+-+|+++....-+.|..+.+.+ |. ....+
T Consensus 180 ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~----k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk--~~~~~ 253 (419)
T KOG3924|consen 180 QLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGC----KKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK--KPNKI 253 (419)
T ss_pred HHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhcc----ccccceeeecCcHHHHHHHHHHHHHHHHHhCC--CcCce
Confidence 3444444556889999999999999999999887654 67789988877666665554432 20 02234
Q ss_pred EEEecChhhh--hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC-CCCh-hhH
Q 041272 155 KLFNMCHSRM--EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH-PGGR-EEL 230 (267)
Q Consensus 155 ~~~~~~~~~l--~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~-~~~ 230 (267)
+.++++..+- ...+.. ..++|+.| .+...++...+.- +++.-+++|-+++-.-.... +... ...
T Consensus 254 ~~i~gsf~~~~~v~eI~~--eatvi~vN---------N~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~L~~r~rs~es~~ 321 (419)
T KOG3924|consen 254 ETIHGSFLDPKRVTEIQT--EATVIFVN---------NVAFDPELKLRSK-EILQKCKDGTRIISSKPLVPRPRSQESTS 321 (419)
T ss_pred eecccccCCHHHHHHHhh--cceEEEEe---------cccCCHHHHHhhH-HHHhhCCCcceEeccccccccccchhHHH
Confidence 5555443321 112222 35677776 3444455544444 88888899999865433222 1111 223
Q ss_pred HHHHHHHHhCCCCce
Q 041272 231 EAVEAFARSLSVDDW 245 (267)
Q Consensus 231 ~~~~~~~~~l~~~~~ 245 (267)
..+.++........+
T Consensus 322 ~~~~df~~it~t~~l 336 (419)
T KOG3924|consen 322 RRVSDFVAITKTRLL 336 (419)
T ss_pred HHHHHHHhhccchhh
Confidence 455666665554444
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.66 Score=41.95 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=59.0
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHH-HHHHHHHHhhccccccccceEEEec-ChhhhhhcCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEA-LKSTSSLLDKTTSKAEKGLVKLFNM-CHSRMEEIVP 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~-i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~ 169 (267)
+++++||=.|+|. |..+..+|+..| ++|++++.+++. .+.+++ .+ .. .++.. +...+.....
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G-----a~Vi~~~~~~~~~~~~a~~----lG----a~--~~i~~~~~~~v~~~~~ 241 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG-----LRVTVISRSSEKEREAIDR----LG----AD--SFLVTTDSQKMKEAVG 241 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC-----CeEEEEeCChHHhHHHHHh----CC----Cc--EEEcCcCHHHHHHhhC
Confidence 5788999999877 778888888874 579999987653 344332 23 11 11111 1112222221
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+|+++-..+. ...+..+.+.|++||.++....
T Consensus 242 ---~~D~vid~~G~---------------~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 242 ---TMDFIIDTVSA---------------EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred ---CCcEEEECCCc---------------HHHHHHHHHhhcCCCEEEEEcc
Confidence 37777765321 2467888899999999987654
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.1 Score=39.13 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=60.8
Q ss_pred hhcCCCCEEEEecCC-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 90 HVVRKGDTVVDATCG-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..+.++.+||-.|+| .|..+..+|+..+ .+|++++.+++..+.+++ ... . .++.....+.....
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G-----~~v~~~~~~~~~~~~~~~-~g~-------~--~~~~~~~~~~~~~~ 222 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMG-----FETVAITRSPDKRELARK-LGA-------D--EVVDSGAELDEQAA 222 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHH-hCC-------c--EEeccCCcchHHhc
Confidence 346788899999987 4777777887763 589999999988877743 211 1 11111111111001
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...+|+++...+. ...+..+.+.|+++|.++...
T Consensus 223 --~~~~d~vi~~~~~---------------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 223 --AGGADVILVTVVS---------------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred --cCCCCEEEECCCc---------------HHHHHHHHHhcccCCEEEEEC
Confidence 1247777754211 256788889999999987654
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.28 Score=46.08 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=35.7
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
++.+|+=+|+|. |..+..+++.+| +.|+.+|.+++.++.+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-----A~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-----AIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHH
Confidence 568999999999 888888888874 579999999998777765
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.09 Score=49.69 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=35.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCCh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS 132 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~ 132 (267)
.|.++..|||+||.+|.+....++.++. +.-|+|||+-|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv---~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPV---GSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCC---CceEEEeeeee
Confidence 4788999999999999999999999987 78999999977
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.3 Score=38.89 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=55.9
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..|.+|+=+|+|. |......++.+ +.+|+.+|.++.....|+. .+ ..+.. .. +...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-----Ga~ViV~d~dp~r~~~A~~----~G-------~~v~~--le---eal~-- 249 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-----GARVIVTEVDPIRALEAAM----DG-------FRVMT--ME---EAAK-- 249 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-----cCEEEEEeCChhhHHHHHh----cC-------CEeCC--HH---HHHh--
Confidence 4688999999998 77777777765 4689999999865444432 12 11111 11 1111
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHH-HHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALE-AAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~~ 220 (267)
..|+++...+. ..++. +....+|+|++++.+..
T Consensus 250 -~aDVVItaTG~---------------~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 250 -IGDIFITATGN---------------KDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred -cCCEEEECCCC---------------HHHHHHHHHhcCCCCcEEEEECC
Confidence 35777665321 35554 47889999998866543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.9 Score=40.72 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=63.3
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC----hhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC----HSRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~----~~~l~ 165 (267)
.+.++++||-.|+|. |..+..+|+..|. ..|+++|.+++..+.+++. + . -.++... .+.+.
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~----~~v~~~~~~~~k~~~~~~~----g----~--~~~i~~~~~~~~~~v~ 248 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGC----TTIIAVDIVDSRLELAKEL----G----A--THVINPKEEDLVAAIR 248 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHHc----C----C--cEEecCCCcCHHHHHH
Confidence 456788999998876 7788888888753 4799999998887766541 2 1 1111111 11222
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
... ...+|+++-..+. ...+..+.+.|+++|.++...
T Consensus 249 ~~~--~~~~d~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 249 EIT--GGGVDYALDTTGV---------------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred HHh--CCCCcEEEECCCC---------------cHHHHHHHHHhccCCEEEEeC
Confidence 222 2357888766321 246788899999999987654
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.79 Score=40.68 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=63.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhc
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEI 167 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~ 167 (267)
..++++.+||=.|+|. |..+..+|+..+. .+|++++.+++..+.+++. +. ..-+.....+. ..+.+.
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~----~~v~~~~~~~~~~~~~~~~----ga---~~~i~~~~~~~~~~l~~~ 236 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGA----SKIIVSEPSEARRELAEEL----GA---TIVLDPTEVDVVAEVRKL 236 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHh----CC---CEEECCCccCHHHHHHHH
Confidence 3467888999888765 6677777777642 3899999999888877542 20 00000011111 122222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. ....+|+++-..+. ...++.+.+.|+++|.++....
T Consensus 237 ~-~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 237 T-GGGGVDVSFDCAGV---------------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred h-CCCCCCEEEECCCC---------------HHHHHHHHHhccCCCEEEEEcc
Confidence 2 12247888776321 2467888999999999876544
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.53 Score=41.48 Aligned_cols=102 Identities=23% Similarity=0.280 Sum_probs=63.6
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-hhhhhhc
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-HSRMEEI 167 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~ 167 (267)
..+.++.+||-.|+|. |..+..+|+.. +.+|+++..+++..+.+++.- . ..-+.....+ ...+...
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~-----g~~v~~~~~s~~~~~~~~~~g-~------~~v~~~~~~~~~~~l~~~ 222 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR-----GARVIVVDIDDERLEFARELG-A------DDTINVGDEDVAARLREL 222 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCeEEEECCCHHHHHHHHHhC-C------CEEecCcccCHHHHHHHH
Confidence 3467888999998875 77888888886 468999988888877764421 1 0001111111 1122222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. +..+|+++...+- ...+..+.+.|+++|.++...
T Consensus 223 ~~-~~~vd~vld~~g~---------------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 223 TD-GEGADVVIDATGN---------------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred hC-CCCCCEEEECCCC---------------HHHHHHHHHHHhcCCEEEEEc
Confidence 22 2357888776311 256788899999999987544
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.99 Score=40.36 Aligned_cols=96 Identities=11% Similarity=0.026 Sum_probs=59.1
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe-cChhhhhhcCCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN-MCHSRMEEIVPK 170 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~~ 170 (267)
+++.+||-.|+|. |..+..+|+..+ .+|+.++.+++....+.+. .+ .. .++. .+...+....
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G-----~~vi~~~~~~~~~~~~~~~---~G----a~--~~i~~~~~~~~~~~~-- 242 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMG-----HHVTVISSSDKKREEALEH---LG----AD--DYLVSSDAAEMQEAA-- 242 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCC-----CeEEEEeCCHHHHHHHHHh---cC----Cc--EEecCCChHHHHHhc--
Confidence 5788999888876 777788888764 5788898887665554432 22 11 1111 1111222221
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+|+++-..+. ...+..+.+.|++||+++....
T Consensus 243 -~~~D~vid~~g~---------------~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 243 -DSLDYIIDTVPV---------------FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred -CCCcEEEECCCc---------------hHHHHHHHHHhccCCEEEEECC
Confidence 146777765321 2467788899999999977544
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.4 Score=32.28 Aligned_cols=93 Identities=14% Similarity=0.040 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC-CcEEEEEEeC
Q 041272 103 CGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS-TAVRLVAFNL 181 (267)
Q Consensus 103 cG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~-~~~d~ii~~~ 181 (267)
||.|.++..+++.+.. .+.+|+.+|.+++.++.+++. .+.++.++..+...+...+ ...+.++...
T Consensus 4 ~G~g~~~~~i~~~L~~--~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE--GGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHh--CCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEEEcc
Confidence 6778899888887754 123899999999998887652 2567777766544332111 2466666552
Q ss_pred CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 182 GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 182 ~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. .+.....+-...+.+.|...++....
T Consensus 71 ~------------~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 71 D------------DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp S------------SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred C------------CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 1 11222233344566678877766554
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.93 Score=39.90 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=59.8
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHh-cCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKM-VADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~-~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
.+.++.+||=.|+|. |..+..+|+. .|. ..++++|.+++..+.+++. + .. .++.....++.+..
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~----~~v~~~~~~~~~~~~~~~~----G----a~--~~i~~~~~~~~~~~ 222 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNV----KAVIVADRIDERLALAKES----G----AD--WVINNAQEPLGEAL 222 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCC----CEEEEEcCCHHHHHHHHHh----C----Cc--EEecCccccHHHHH
Confidence 467889999999765 6666667774 343 4688999999888777652 1 00 11111111122211
Q ss_pred C-CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 P-KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~-~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. ...++|+++...+. ...+.++.+.|+++|.++....
T Consensus 223 ~~~g~~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 223 EEKGIKPTLIIDAACH---------------PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred hcCCCCCCEEEECCCC---------------HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 12234555554221 2467888999999999987644
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.97 Score=42.16 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=34.5
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHH
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~ 142 (267)
..+++|+-||.|.+..-+-.. | ...|.++|+++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G----~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G----GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C----CEEEEEEechHHHHHHHHHHc
Confidence 459999999999999988664 2 246788999998888777764
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.3 Score=36.70 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=51.6
Q ss_pred CCCEEEEecCCCCh--HHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-hhhhhhcCCC
Q 041272 94 KGDTVVDATCGNGY--DTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-HSRMEEIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~--~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~~ 170 (267)
....++++.|+.|. .++.||-...+ .+++++.|-.+++.+...++.+...+ ....++|+.++ .+++...+
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~--TgGR~vCIvp~~~~~~~~~~~l~~~~---~~~~vEfvvg~~~e~~~~~~-- 113 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQ--TGGRHVCIVPDEQSLSEYKKALGEAG---LSDVVEFVVGEAPEEVMPGL-- 113 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHh--cCCeEEEEcCChhhHHHHHHHHhhcc---ccccceEEecCCHHHHHhhc--
Confidence 34578999776543 34444332222 36899999999998888888888766 34557887765 34444333
Q ss_pred CCcEEEEEEe
Q 041272 171 STAVRLVAFN 180 (267)
Q Consensus 171 ~~~~d~ii~~ 180 (267)
..+|+++.|
T Consensus 114 -~~iDF~vVD 122 (218)
T PF07279_consen 114 -KGIDFVVVD 122 (218)
T ss_pred -cCCCEEEEe
Confidence 247888877
|
The function of this family is unknown. |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.3 Score=39.11 Aligned_cols=102 Identities=23% Similarity=0.214 Sum_probs=63.7
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccce-EEEecC----hhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV-KLFNMC----HSR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v-~~~~~~----~~~ 163 (267)
..++++.+||-.|+|. |..+..+|+..|. ..|+.++.+++..+.+++. + ...+ .....+ ...
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~G~----~~v~~~~~~~~~~~~~~~~----g----~~~vi~~~~~~~~~~~~~ 225 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGA----TKVVVTDIDPSRLEFAKEL----G----ATHTVNVRTEDTPESAEK 225 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEECCCHHHHHHHHHc----C----CcEEeccccccchhHHHH
Confidence 3467889999888876 7788888888642 2389999888887777542 2 1111 100001 112
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+..... +..+|+++...+. ...+..+.+.|+++|+++...
T Consensus 226 ~~~~~~-~~~~d~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 226 IAELLG-GKGPDVVIECTGA---------------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HHHHhC-CCCCCEEEECCCC---------------HHHHHHHHHHhhcCCEEEEEc
Confidence 333322 2358888876321 236788899999999987654
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.81 Score=38.96 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=61.6
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..+.++.+||-.|+|. |..+..+|+..+. .+|++++.+++..+.+++.- . ...+ +... ... .
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~----~~vi~~~~~~~~~~~~~~~g-~------~~~~--~~~~-~~~---~ 155 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGA----REVVGVDPDAARRELAEALG-P------ADPV--AADT-ADE---I 155 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CcEEEECCCHHHHHHHHHcC-C------Cccc--cccc-hhh---h
Confidence 3467889999999877 7778888887643 23999999998887766531 0 0111 1000 000 0
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|+++...+. ...+....+.|+++|.++....
T Consensus 156 -~~~~~d~vl~~~~~---------------~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 156 -GGRGADVVIEASGS---------------PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred -cCCCCCEEEEccCC---------------hHHHHHHHHHhcCCcEEEEEec
Confidence 12357777755221 2467788889999999976543
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.13 E-value=1 Score=36.34 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=59.7
Q ss_pred EEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-------cc------cccccceEEEecCh
Q 041272 97 TVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-------TS------KAEKGLVKLFNMCH 161 (267)
Q Consensus 97 ~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-------~~------~~~~~~v~~~~~~~ 161 (267)
+|-=+|+|+ | .++..++.. +.+|+-+|.+++.++.+++.++.. +. .....++.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~--- 71 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTT--- 71 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEES---
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccccc---
Confidence 355678776 4 334444443 579999999999999988887651 10 01134455432
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
++.+.. ..|+|+-.. ....+.+.++++++-+.+.|+-+|.-.
T Consensus 72 -dl~~~~----~adlViEai----------~E~l~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 72 -DLEEAV----DADLVIEAI----------PEDLELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp -SGGGGC----TESEEEE-S-----------SSHHHHHHHHHHHHCCS-TTSEEEE-
T ss_pred -CHHHHh----hhheehhhc----------cccHHHHHHHHHHHHHHhCCCceEEec
Confidence 233322 478888872 334677789999999999999888543
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.87 Score=39.09 Aligned_cols=112 Identities=19% Similarity=0.142 Sum_probs=62.8
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC---C
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV---P 169 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~---~ 169 (267)
+.+|=-|+ |.++..+++.+.. +.+|+.+|.+++.++...+.++..+ .++.++..|..+... .. .
T Consensus 3 k~~lItGa--~gIG~~la~~l~~---G~~Vv~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGA---GKKVLLADYNEENLEAAAKTLREAG-----FDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhC---CCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEEeecCCHHHHHHHHHHHH
Confidence 35555564 5788888888754 6899999999877766655554422 345555554443321 11 1
Q ss_pred CCCcEEEEEEeCCCCCCCCC---ceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDK---SVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~---~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
....+|.++.+.+..+.... .+.........+++.+.+.++++|.+++
T Consensus 73 ~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 73 TLGPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred hcCCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 12368999999876432110 0001122233455666666666554433
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.9 Score=37.71 Aligned_cols=102 Identities=19% Similarity=0.147 Sum_probs=62.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-c
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-I 167 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~ 167 (267)
..+.++.+||-.|+|. |..+..+|+..+. ..|+.++.+++..+.+++. + .. .++.....+... .
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~----~~v~~~~~~~~~~~~~~~~----g----~~--~~~~~~~~~~~~~~ 220 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGA----SRVTVAEPNEEKLELAKKL----G----AT--ETVDPSREDPEAQK 220 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEECCCHHHHHHHHHh----C----Ce--EEecCCCCCHHHHH
Confidence 3467889999998764 6677778877642 2389999998887776442 2 11 122211111100 1
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
......+|+++...+. ...+..+.+.|+++|.++....
T Consensus 221 ~~~~~~vd~v~~~~~~---------------~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 221 EDNPYGFDVVIEATGV---------------PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred HhcCCCCcEEEECCCC---------------hHHHHHHHHHHhcCCEEEEEec
Confidence 1112357888865321 2577888999999999976543
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.2 Score=38.10 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=51.8
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+.+|+..+|+|.-+|.+|-.|.++ +-.|++||.-+- .+++-. .+.|+... +|-.++.+
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr------~m~V~aVDng~m-----a~sL~d------tg~v~h~r---~DGfk~~P 266 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKR------NMRVYAVDNGPM-----AQSLMD------TGQVTHLR---EDGFKFRP 266 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhc------ceEEEEeccchh-----hhhhhc------ccceeeee---ccCccccc
Confidence 45789999999999999999999988 589999997552 223323 34565554 34445555
Q ss_pred CCCcEEEEEEeC
Q 041272 170 KSTAVRLVAFNL 181 (267)
Q Consensus 170 ~~~~~d~ii~~~ 181 (267)
....+|..++++
T Consensus 267 ~r~~idWmVCDm 278 (358)
T COG2933 267 TRSNIDWMVCDM 278 (358)
T ss_pred CCCCCceEEeeh
Confidence 445789999995
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.2 Score=42.75 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=39.4
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCC----CcEEEEEeCChHHHHHHHHHHhh
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESS----AGCVYGLDIQSEALKSTSSLLDK 144 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p----~~~v~giD~s~~~i~~a~~~~~~ 144 (267)
-+|+|+|.|+|.++..+.+.+....| ..+++-||.|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 59999999999999999988765222 25899999999999988888866
|
; PDB: 4F3N_A 1ZKD_B. |
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.4 Score=39.45 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=61.9
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec--Ch-hhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM--CH-SRMEE 166 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~ 166 (267)
.+.++.+||=.|+|. |..+..+|+..|. ..|++++.+++..+.+++ +... ..+..... +. ..+..
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~----~~v~~~~~~~~~~~~~~~-~g~~------~~v~~~~~~~~~~~~l~~ 248 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGA----SRIIAVDINKDKFEKAKQ-LGAT------ECINPRDQDKPIVEVLTE 248 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHH-hCCC------eecccccccchHHHHHHH
Confidence 467888999888866 6777778887643 468999999888777744 2110 00111111 11 11222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhccc-CCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI-PGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~ 219 (267)
... ..+|+++...+. ...+..+.+.|+ ++|+++...
T Consensus 249 ~~~--~~~d~vid~~g~---------------~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 249 MTD--GGVDYAFEVIGS---------------ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred HhC--CCCcEEEECCCC---------------HHHHHHHHHHhccCCCEEEEEe
Confidence 232 357888765221 257778889999 999998654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.88 Score=39.86 Aligned_cols=97 Identities=23% Similarity=0.262 Sum_probs=69.3
Q ss_pred CCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 95 GDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 95 ~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
..+|.-||-|. |..+..+|--+ +++|+-+|+|...+.+-..-. ..++..+-....++.+... .
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-----gA~Vtild~n~~rl~~ldd~f--------~~rv~~~~st~~~iee~v~---~ 231 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-----GADVTILDLNIDRLRQLDDLF--------GGRVHTLYSTPSNIEEAVK---K 231 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-----CCeeEEEecCHHHHhhhhHhh--------CceeEEEEcCHHHHHHHhh---h
Confidence 45788888887 88888888766 579999999988776655432 3567777666666666553 4
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
.|++|... .+.....+.-..+++.+.+|||+.++
T Consensus 232 aDlvIgaV---------LIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 232 ADLVIGAV---------LIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred ccEEEEEE---------EecCCCCceehhHHHHHhcCCCcEEE
Confidence 78888762 22223444567788899999999985
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.55 Score=40.74 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=50.1
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT 145 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~ 145 (267)
.....+...++...-.+++.|||.-+|+|..+....+. +..++|+|++++-++.+.+++...
T Consensus 206 ~~P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~------~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 206 QKPLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNL------GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CChHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHc------CCceEEEecCHHHHHHHHHHHHhh
Confidence 34455566666556678999999999999888776665 468999999999999999998764
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=92.38 E-value=1.7 Score=38.75 Aligned_cols=99 Identities=20% Similarity=0.201 Sum_probs=59.6
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccce-EEEecCh----hhhhh
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV-KLFNMCH----SRMEE 166 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v-~~~~~~~----~~l~~ 166 (267)
.++.+||=.|+|. |..+..+|+..+. .+|++++.+++..+.+++ .+ ...+ ....... ..+..
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~----~~v~~~~~~~~~~~~~~~----~g----~~~vi~~~~~~~~~~~~~i~~ 243 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGA----RRVIVIDGSPERLELARE----FG----ADATIDIDELPDPQRRAIVRD 243 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHH----cC----CCeEEcCcccccHHHHHHHHH
Confidence 4788898888776 7777778887642 389999998887766643 22 1111 0000000 11222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. ....+|+++...+. ...+....+.|+++|+++...
T Consensus 244 ~~-~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 244 IT-GGRGADVVIEASGH---------------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred Hh-CCCCCcEEEECCCC---------------hHHHHHHHHHhccCCEEEEEc
Confidence 22 22357888765321 246778889999999997654
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.2 Score=39.67 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=59.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhc--------C----CCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMV--------A----DESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~--------~----~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
..-+|+|+||.+|..++.+...+ . .+-|..+|+--|.-..=-..-=+.+..........+--|+.+..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 34599999999999988766532 1 11123577888865433222222222210000001233444444
Q ss_pred hhhhhcCCCCCcEEEEEEe--CCCCCCCCC-------------ceeec---h------------hhHHHHHHHHHhcccC
Q 041272 162 SRMEEIVPKSTAVRLVAFN--LGYLPGGDK-------------SVITT---S------------ETTKMALEAAERILIP 211 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~--~~~lp~~d~-------------~~~~~---~------------~~~~~~l~~~~~~Lkp 211 (267)
.....-+.+..++|++++. +|++..... .+... + .+...+|+.=.+=|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 4555545556689998766 455432111 11111 1 1123344444566899
Q ss_pred CcEEEEEEec
Q 041272 212 GGLISMVVYV 221 (267)
Q Consensus 212 gG~l~i~~~~ 221 (267)
||+++++...
T Consensus 176 GG~mvl~~~g 185 (334)
T PF03492_consen 176 GGRMVLTFLG 185 (334)
T ss_dssp EEEEEEEEEE
T ss_pred CcEEEEEEee
Confidence 9999988763
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.3 Score=36.77 Aligned_cols=83 Identities=12% Similarity=-0.014 Sum_probs=52.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+.++|-.|+ +|.++..+++++-. .+.+|+.++.+++..+...+.++..+ .++.++..|..+.... .
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAK--AGWDLALVARSQDALEALAAELRSTG-----VKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhCC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 3567888884 67777777776533 15699999999876665555444322 4566666665543321 1
Q ss_pred --CCCCcEEEEEEeCCCC
Q 041272 169 --PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~l 184 (267)
......|.++.+.+..
T Consensus 77 ~~~~~~~id~lv~~ag~~ 94 (241)
T PRK07454 77 LLEQFGCPDVLINNAGMA 94 (241)
T ss_pred HHHHcCCCCEEEECCCcc
Confidence 1113589999887654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=2.1 Score=35.95 Aligned_cols=83 Identities=8% Similarity=0.008 Sum_probs=52.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.+++||=.| |+|.++..+++++-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+... .
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~i~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQ--AGAEVILNGRDPAKLAAAAESLKGQG-----LSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcC-----ceEEEEEccCCCHHHHHHHHHH
Confidence 467899888 567777777776533 15789999999887776666665433 345555555443222 1
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 81 ~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 81 FEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 11123578999887664
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.76 E-value=2.4 Score=36.56 Aligned_cols=104 Identities=11% Similarity=0.107 Sum_probs=67.3
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC--C
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS--T 172 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~--~ 172 (267)
|..|+=+| ---..++.++-. +- ..+|..+|+++..++..++.+++.| .+|++.+..|. ...++++ .
T Consensus 153 gK~I~vvG-DDDLtsia~aLt-~m---pk~iaVvDIDERli~fi~k~aee~g----~~~ie~~~~Dl---r~plpe~~~~ 220 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALT-GM---PKRIAVVDIDERLIKFIEKVAEELG----YNNIEAFVFDL---RNPLPEDLKR 220 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhc-CC---CceEEEEechHHHHHHHHHHHHHhC----ccchhheeehh---cccChHHHHh
Confidence 56788888 333333443332 22 3689999999999999999999988 66777665443 3333332 3
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC---cEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG---GLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~i~~~ 220 (267)
.||+.+.++++ ..+....++.+=...||.- |++.++.-
T Consensus 221 kFDvfiTDPpe----------Ti~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 221 KFDVFITDPPE----------TIKALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred hCCeeecCchh----------hHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence 79999999644 1123345666666677755 77776654
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=1.5 Score=37.12 Aligned_cols=118 Identities=10% Similarity=0.077 Sum_probs=62.2
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c--
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I-- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~-- 167 (267)
.++++|-.|.++ +.++..+|+.+-. -+.+|+.++.++...+..++..++.+ .+.++..|..+... .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~--~G~~v~l~~r~~~~~~~~~~~~~~~~------~~~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA--LGAELAVTYLNDKARPYVEPLAEELD------APIFLPLDVREPGQLEAVFA 80 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH--cCCEEEEEeCChhhHHHHHHHHHhhc------cceEEecCcCCHHHHHHHHH
Confidence 467899999887 3677777665432 15789888988654333333222211 22334444333221 1
Q ss_pred --CCCCCcEEEEEEeCCCCCCCC--Ccee-echhh-----------HHHHHHHHHhcccCCcEEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGD--KSVI-TTSET-----------TKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d--~~~~-~~~~~-----------~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
......+|+++.|.+..+..+ ..+. ...++ .-.+.+.+...++.+|.++.+.
T Consensus 81 ~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 81 RIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred HHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 111246899999987654211 1111 11111 1233456667777778776543
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.53 E-value=3.7 Score=37.86 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=54.7
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.|.+|+=+|+|. |......++.. +.+|+.+|+++.....+.. .+ +.+. . +.+...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-----Ga~ViV~d~dp~ra~~A~~----~G-------~~v~--~---l~eal~--- 266 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-----GARVIVTEVDPICALQAAM----DG-------FRVM--T---MEEAAE--- 266 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-----CCEEEEEcCCchhhHHHHh----cC-------CEec--C---HHHHHh---
Confidence 688999999987 66666666665 4689999999876544432 12 1111 1 122221
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHH-HHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALE-AAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~~ 220 (267)
..|+++...+. ..++. ...+.+|+|++++....
T Consensus 267 ~aDVVI~aTG~---------------~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 267 LGDIFVTATGN---------------KDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCCEEEECCCC---------------HHHHHHHHHhcCCCCCEEEEcCC
Confidence 36777665221 34565 67888999998866543
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=91.43 E-value=1.9 Score=38.02 Aligned_cols=99 Identities=25% Similarity=0.312 Sum_probs=61.5
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC---hhhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC---HSRMEE 166 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~---~~~l~~ 166 (267)
.+.++.+||-.|+|. |..+..+|+..|. ..|++++.+++..+.+++ .+ . ..++... ...+..
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~----~~v~~~~~~~~~~~~l~~----~g----~--~~~~~~~~~~~~~~~~ 221 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGA----KRVIAVDIDDEKLAVARE----LG----A--DDTINPKEEDVEKVRE 221 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHH----cC----C--CEEecCccccHHHHHH
Confidence 466888999998776 7777888887642 249999988877766643 12 1 1111111 122222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. ....+|+++...+. ...+..+.+.|+++|.++...
T Consensus 222 ~~-~~~~~d~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 222 LT-EGRGADLVIEAAGS---------------PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred Hh-CCCCCCEEEECCCC---------------HHHHHHHHHHhhcCCEEEEEc
Confidence 22 22247888765211 256788899999999987654
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.7 Score=37.81 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=57.7
Q ss_pred CCCEEEEecCCCC---hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh----
Q 041272 94 KGDTVVDATCGNG---YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---- 166 (267)
Q Consensus 94 ~~~~VLDlGcG~G---~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---- 166 (267)
.|+.||==|.|+| .++..+|++ +++++-.|++++..+...+.+++.| +++....|..+-.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r------g~~~vl~Din~~~~~etv~~~~~~g------~~~~y~cdis~~eei~~~ 104 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR------GAKLVLWDINKQGNEETVKEIRKIG------EAKAYTCDISDREEIYRL 104 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh------CCeEEEEeccccchHHHHHHHHhcC------ceeEEEecCCCHHHHHHH
Confidence 5789999898887 345666666 5789999999999999888888754 44443333333222
Q ss_pred ---cCCCCCcEEEEEEeCCCCCCC
Q 041272 167 ---IVPKSTAVRLVAFNLGYLPGG 187 (267)
Q Consensus 167 ---~~~~~~~~d~ii~~~~~lp~~ 187 (267)
...+-+++|+++.|.+..+..
T Consensus 105 a~~Vk~e~G~V~ILVNNAGI~~~~ 128 (300)
T KOG1201|consen 105 AKKVKKEVGDVDILVNNAGIVTGK 128 (300)
T ss_pred HHHHHHhcCCceEEEeccccccCC
Confidence 223346899999999887665
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.06 E-value=1.3 Score=40.00 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=56.0
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
++.+|+=+|+|. |..+...+..+| .+|+.+|.+++..+.+.+... ..+.....+..++.+...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG-----a~V~v~d~~~~~~~~l~~~~g--------~~v~~~~~~~~~l~~~l~--- 229 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG-----ATVTILDINIDRLRQLDAEFG--------GRIHTRYSNAYEIEDAVK--- 229 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC-----CeEEEEECCHHHHHHHHHhcC--------ceeEeccCCHHHHHHHHc---
Confidence 345799999986 777777777663 589999999877665544321 112111122234444332
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.+|+++...+. |.... +.-+-++..+.+|||++++-+
T Consensus 230 ~aDvVI~a~~~-~g~~~--------p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 230 RADLLIGAVLI-PGAKA--------PKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred cCCEEEEcccc-CCCCC--------CcCcCHHHHhcCCCCCEEEEE
Confidence 46888876422 11100 001225555667999877543
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.02 E-value=3.3 Score=36.00 Aligned_cols=92 Identities=22% Similarity=0.172 Sum_probs=58.9
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
.++++.+||=.|+|. |..+..+|+..| .+|++++.+++..+.+++ + + ...+.... + . .
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G-----~~vi~~~~~~~~~~~~~~-~---g----~~~~~~~~----~---~-~ 210 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTG-----PDVVLVGRHSEKLALARR-L---G----VETVLPDE----A---E-S 210 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-----CeEEEEcCCHHHHHHHHH-c---C----CcEEeCcc----c---c-c
Confidence 467888999988765 666666777764 579999999988888776 2 2 11110010 0 0 1
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
....+|.++-..+- ...+..+.+.|+++|.++..
T Consensus 211 ~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 211 EGGGFDVVVEATGS---------------PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred cCCCCCEEEECCCC---------------hHHHHHHHHHhhcCCEEEEE
Confidence 22357777765321 24677888899999999763
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=91.02 E-value=2 Score=38.75 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=60.9
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccce-EEEe----cChhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV-KLFN----MCHSRM 164 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v-~~~~----~~~~~l 164 (267)
.++++.+||=.|+|. |..++.+|+..|. .+|++++.+++..+.+++ .+ ...+ .... .....+
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~----~~vi~~~~~~~~~~~~~~----~g----~~~~v~~~~~~~~~~~~~v 267 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGA----SKVIAFEISEERRNLAKE----MG----ADYVFNPTKMRDCLSGEKV 267 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHH----cC----CCEEEcccccccccHHHHH
Confidence 567888888888876 6667777877642 379999998876655554 22 1111 0000 001122
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.... .+..+|+++...+ .....+..+.+.|+++|+++...
T Consensus 268 ~~~~-~g~gvDvvld~~g--------------~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 268 MEVT-KGWGADIQVEAAG--------------APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred HHhc-CCCCCCEEEECCC--------------CcHHHHHHHHHHHHcCCEEEEEC
Confidence 2332 2235788876522 11246778888999999997654
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=90.88 E-value=3.4 Score=36.45 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=59.8
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhcC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~ 168 (267)
.+.++.+||=.|+|. |..+..+|+..+. .+|+++|.++...+.+++ .+ ...-+.....+. ..+....
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G~----~~v~~~~~~~~~~~~~~~----~g---~~~~v~~~~~~~~~~i~~~~ 231 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYSP----SKIIMVDLDDNRLEVAKK----LG---ATHTVNSAKGDAIEQVLELT 231 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHH----hC---CCceeccccccHHHHHHHHh
Confidence 456788888888765 6666777777642 578999998877666654 12 000011111111 1222222
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
....+|+++...+. ...++.+.+.|+++|.++...
T Consensus 232 -~~~~~d~vld~~g~---------------~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 232 -DGRGVDVVIEAVGI---------------PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred -CCCCCCEEEECCCC---------------HHHHHHHHHhccCCcEEEEec
Confidence 22357877765211 246788889999999987543
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=90.84 E-value=2.7 Score=36.82 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=55.4
Q ss_pred CCCEEEEe--cCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----hhh
Q 041272 94 KGDTVVDA--TCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----MEE 166 (267)
Q Consensus 94 ~~~~VLDl--GcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l~~ 166 (267)
.+.++|=+ |+|. |..+..+|+..+ .+|++++.+++..+.+++ .+ .. .++.....+ +.+
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G-----~~vi~~~~~~~~~~~~~~----~g----~~--~~i~~~~~~~~~~v~~ 206 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADG-----IKVINIVRRKEQVDLLKK----IG----AE--YVLNSSDPDFLEDLKE 206 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHH----cC----Cc--EEEECCCccHHHHHHH
Confidence 34444443 6555 777788888764 689999999988877765 22 11 122111112 222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
... ...+|+++-..+. .......+.|++||+++....
T Consensus 207 ~~~-~~~~d~vid~~g~----------------~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 207 LIA-KLNATIFFDAVGG----------------GLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred HhC-CCCCcEEEECCCc----------------HHHHHHHHhhCCCCEEEEEEe
Confidence 222 2257887765321 234556788899999977653
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.79 E-value=2.7 Score=37.04 Aligned_cols=100 Identities=20% Similarity=0.259 Sum_probs=59.2
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccc-eEEEecChhhhhhcCC
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL-VKLFNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~-v~~~~~~~~~l~~~~~ 169 (267)
..++.+||-.|+|. |..+..+|+..+. .+|++++-+++..+.+++. + ... +.....+...+.....
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~----~~v~~~~~~~~~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~~ 228 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGA----SLVIASDPNPYRLELAKKM----G----ADVVINPREEDVVEVKSVTD 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEECCCHHHHHHHHHh----C----cceeeCcccccHHHHHHHcC
Confidence 45788888888765 7777888887642 3788888777766655541 2 011 0000101111222222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...+|+++.+.+. ...+.++.+.|+++|.++...
T Consensus 229 -~~~vd~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 229 -GTGVDVVLEMSGN---------------PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred -CCCCCEEEECCCC---------------HHHHHHHHHHhccCCEEEEEc
Confidence 2357888776321 256788889999999987654
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.72 E-value=4.1 Score=34.53 Aligned_cols=82 Identities=11% Similarity=-0.006 Sum_probs=48.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh---hc---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME---EI--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~---~~--- 167 (267)
.+.+||-.| |+|.++..+++.+-. .+.+|+.++.+++.++...+.+...+ .++.++..|..+.. ..
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~i~~~~~~ 79 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFAR--AGANVAVASRSQEKVDAAVAQLQQAG-----PEGLGVSADVRDYAAVEAAFAQ 79 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhC-----CceEEEECCCCCHHHHHHHHHH
Confidence 466888887 566667666655432 25689999999887665555444322 34455554443322 11
Q ss_pred -CCCCCcEEEEEEeCCC
Q 041272 168 -VPKSTAVRLVAFNLGY 183 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~ 183 (267)
......+|.++.+.+.
T Consensus 80 ~~~~~~~iD~vi~~ag~ 96 (264)
T PRK07576 80 IADEFGPIDVLVSGAAG 96 (264)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 1112357999888653
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.9 Score=35.66 Aligned_cols=81 Identities=14% Similarity=0.064 Sum_probs=48.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cCC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IVP- 169 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~~- 169 (267)
.+.+||-.| |+|.++..+++++-. .+.+|++++.++.......+.+... .++.++..|..+... ...
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~--~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLA--EGYKVAITARDQKELEEAAAELNNK------GNVLGLAADVRDEADVQRAVDA 75 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHH--CCCEEEEeeCCHHHHHHHHHHHhcc------CcEEEEEccCCCHHHHHHHHHH
Confidence 357888888 577787777765532 1568999999987666555544321 345555555443322 111
Q ss_pred ---CCCcEEEEEEeCCC
Q 041272 170 ---KSTAVRLVAFNLGY 183 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~ 183 (267)
....+|.++.+.+.
T Consensus 76 ~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 76 IVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 11257888887654
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=8.8 Score=31.89 Aligned_cols=116 Identities=11% Similarity=0.039 Sum_probs=61.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChH-HHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE-ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~-~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
+.++|-.|+. |.++..+++.+-. .+.+|++++.+.. ..+.....++..+ .++.++..|..+.... .
T Consensus 6 ~k~vlItGas-ggiG~~l~~~l~~--~G~~V~~~~r~~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSS-RGIGADTAKILAG--AGAHVVVNYRQKAPRANKVVAEIEAAG-----GRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCC-CcHHHHHHHHHHH--CCCEEEEEeCCchHhHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHHH
Confidence 5688888854 5566666655432 1568999887643 3333333333322 3455555555443321 1
Q ss_pred --CCCCcEEEEEEeCCCCCCCC----CceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 169 --PKSTAVRLVAFNLGYLPGGD----KSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp~~d----~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.....+|.++.+.+.....+ ..+.........+++.+.+.++.+|.++++
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 11125788888875432211 111123334456777777777666766554
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.9 Score=37.45 Aligned_cols=98 Identities=16% Similarity=0.080 Sum_probs=53.2
Q ss_pred EEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccc-------------cccceEEEecCh
Q 041272 97 TVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA-------------EKGLVKLFNMCH 161 (267)
Q Consensus 97 ~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~-------------~~~~v~~~~~~~ 161 (267)
+|.=||+|. | .++..+++. +.+|+.+|.+++.++.++++........ ...++.+..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~--- 73 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL--- 73 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC---
Confidence 566777764 2 233333333 4689999999999998876543211000 011222221
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
++.+.. .+.|+|+...+. .......++.++.+.++|+.++.+
T Consensus 74 -~~~~~~---~~aD~Vi~avpe----------~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 74 -DLKAAV---ADADLVIEAVPE----------KLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred -cHHHhh---cCCCEEEEeccC----------CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 121111 146778776321 123345677888888888776543
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=3 Score=34.43 Aligned_cols=118 Identities=17% Similarity=0.077 Sum_probs=63.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---CC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---VP- 169 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~~- 169 (267)
.+.+||-.|++ |.++..+++.+-. .+.+|++++.+++..+...+.+... .++.++..|..+.... ..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALK--EGAQVCINSRNENKLKRMKKTLSKY------GNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEECCCCCHHHHHHHHHH
Confidence 35689999985 5566666655422 1579999999988766554444332 2455555544432211 10
Q ss_pred ---CCCcEEEEEEeCCCCCCCCC-ce-------eechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 ---KSTAVRLVAFNLGYLPGGDK-SV-------ITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~lp~~d~-~~-------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|.++.+.+....... .. ..........++.+.+.++++|.++++..
T Consensus 75 ~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred HHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 01246888877654221100 00 00011123345666677788887776553
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=90.32 E-value=1 Score=35.56 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 198 TKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 198 ~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
..+.+.++.++|||||.+++..+.+.
T Consensus 90 dl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 90 DLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred cHHHHHHHHHhhccCCeEEEEeecCC
Confidence 36788899999999999999888764
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.24 Score=42.59 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=32.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHH
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALK 136 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~ 136 (267)
..+++|||+|||.|...+.+.... ...++..|++.+.++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-----~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-----AVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-----cceeeeEecchhhee
Confidence 478899999999999998888652 368889999888773
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=90.24 E-value=2.9 Score=33.85 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=49.0
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc---cccc------cccceEEEecChhhhhhc
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT---TSKA------EKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~---~~~~------~~~~v~~~~~~~~~l~~~ 167 (267)
+|-=+|.|- .++.+|..+-. -+.+|+|+|++++.++..++-..-. +... ...++.+...-...+.
T Consensus 2 ~I~ViGlGy--vGl~~A~~lA~--~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~-- 75 (185)
T PF03721_consen 2 KIAVIGLGY--VGLPLAAALAE--KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK-- 75 (185)
T ss_dssp EEEEE--ST--THHHHHHHHHH--TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred EEEEECCCc--chHHHHHHHHh--CCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence 455566554 44333332211 0469999999999887765421110 0000 0234444322111121
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
..|+++...+-....+.. .......++++.+.+.|++|-.+++-
T Consensus 76 -----~adv~~I~VpTP~~~~~~--~Dls~v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 76 -----DADVVFICVPTPSDEDGS--PDLSYVESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp -----H-SEEEE----EBETTTS--BETHHHHHHHHHHHHHHCSCEEEEES
T ss_pred -----ccceEEEecCCCccccCC--ccHHHHHHHHHHHHHHHhhcceEEEc
Confidence 345555553321112111 12344578899999999997766553
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.12 E-value=2.2 Score=37.73 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=60.2
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhhhhc
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRMEEI 167 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~ 167 (267)
.++.+||-.|+|. |..+..+|+..|. .+|+.++.+++..+.+++ + + .. .++.... ..+...
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~----~~v~~~~~~~~~~~~~~~-~---g----~~--~~~~~~~~~~~~~~~~~ 239 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGP----ANIIVVDIDEAKLEAAKA-A---G----AD--VVVNGSDPDAAKRIIKA 239 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHH-h---C----Cc--EEecCCCccHHHHHHHH
Confidence 4678899988775 7777888887642 479999988887777643 2 2 00 1121111 112222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. . .+|+++...+. ...+..+.+.|+++|+++...
T Consensus 240 ~~-~-~~d~vid~~g~---------------~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 240 AG-G-GVDAVIDFVNN---------------SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred hC-C-CCcEEEECCCC---------------HHHHHHHHHHhhcCCeEEEEC
Confidence 22 2 57888765321 256888899999999987543
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=90.06 E-value=3 Score=36.79 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=58.6
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcE-EEEEeCChHHHHHHHHHHhhccccccccc-eEEEecCh-hhhhhc
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKTTSKAEKGL-VKLFNMCH-SRMEEI 167 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~-v~~~~~~~-~~l~~~ 167 (267)
+.++.+||-.|+|. |..+..+|+..| .+ |++++.+++..+.+++. + ... +.....+. ..+...
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G-----~~~v~~~~~~~~~~~~~~~~----g----~~~~v~~~~~~~~~~l~~~ 225 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASG-----AYPVIVSDPNEYRLELAKKM----G----ATYVVNPFKEDVVKEVADL 225 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-----CcEEEEECCCHHHHHHHHHh----C----CcEEEcccccCHHHHHHHh
Confidence 46788888877764 667777888764 44 88898888776666542 2 011 11111111 112222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. ....+|+++...+- ...+..+.+.|+++|.++....
T Consensus 226 ~-~~~~~d~vld~~g~---------------~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 226 T-DGEGVDVFLEMSGA---------------PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred c-CCCCCCEEEECCCC---------------HHHHHHHHHhhcCCCEEEEEcc
Confidence 2 22357777765211 2567888999999999876543
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=90.02 E-value=3.4 Score=36.93 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=59.0
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhhhh
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRMEE 166 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l~~ 166 (267)
+.++.+||=.|+|. |..+..+|+..+. ..|++++.+++..+.+++ + + . -.++.... ..+..
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~----~~vi~~~~s~~~~~~~~~-~---g----~--~~v~~~~~~~~~~~l~~ 250 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGA----SPIIAVDVRDEKLAKAKE-L---G----A--THTVNAAKEDAVAAIRE 250 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHH-h---C----C--ceEecCCcccHHHHHHH
Confidence 46788888777764 6777777877642 349999998887776643 1 2 0 11111111 11222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. .+..+|+++...+- ...++.+.+.|+++|.++...
T Consensus 251 ~~-~~~~~d~vld~vg~---------------~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 251 IT-GGRGVDVVVEALGK---------------PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred Hh-CCCCCCEEEEeCCC---------------HHHHHHHHHHHhcCCEEEEEc
Confidence 22 22358888765321 136788889999999987654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.93 E-value=2.4 Score=37.31 Aligned_cols=100 Identities=17% Similarity=0.096 Sum_probs=59.7
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccce-EEEecCh-hhhhhcCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV-KLFNMCH-SRMEEIVP 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v-~~~~~~~-~~l~~~~~ 169 (267)
.++++||-.|+|. |..+..+|+..+. .+|+.++.+++..+.+++. + ...+ .....+. ..+....
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~----~~v~~~~~~~~~~~~~~~l----g----~~~~~~~~~~~~~~~~~~~~- 228 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGA----RHVVITDVNEYRLELARKM----G----ATRAVNVAKEDLRDVMAELG- 228 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHHh----C----CcEEecCccccHHHHHHHhc-
Confidence 4678888888776 7777888887642 3688888888777665542 2 0110 0001111 1122222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|+++...+. ...+..+.+.|+++|.++....
T Consensus 229 ~~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 229 MTEGFDVGLEMSGA---------------PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CCCCCCEEEECCCC---------------HHHHHHHHHHHhcCCEEEEEec
Confidence 22357777764321 3577888999999999977654
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=89.88 E-value=5.3 Score=35.15 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=58.6
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
.+.++.+||=.|||. |..+..+++.. +.+|+.++.+++..+.+++ + + .. .++.....+.....
T Consensus 166 ~~~~g~~vlV~g~g~vG~~~~~~a~~~-----G~~v~~~~~~~~~~~~~~~-~---g----~~--~vi~~~~~~~~~~~- 229 (337)
T cd05283 166 GVGPGKRVGVVGIGGLGHLAVKFAKAL-----GAEVTAFSRSPSKKEDALK-L---G----AD--EFIATKDPEAMKKA- 229 (337)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEcCCHHHHHHHHH-c---C----Cc--EEecCcchhhhhhc-
Confidence 356788888788765 66777777775 3689999999887777753 1 1 01 11111111111111
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...+|+++...+. ...+..+.+.|+++|.++...
T Consensus 230 -~~~~d~v~~~~g~---------------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 230 -AGSLDLIIDTVSA---------------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred -cCCceEEEECCCC---------------cchHHHHHHHhcCCCEEEEEe
Confidence 2357887765321 124677888999999887654
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.85 E-value=4.2 Score=36.31 Aligned_cols=99 Identities=18% Similarity=0.278 Sum_probs=60.7
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l~ 165 (267)
.+.++.+||-.|+|. |..+..+++..|. .+|++++.+++..+.+++ + + . -.++.... ..+.
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G~----~~Vi~~~~~~~~~~~~~~-~---g----~--~~vv~~~~~~~~~~l~ 244 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGA----SRIIAVDPVPEKLELARR-F---G----A--THTVNASEDDAVEAVR 244 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CcEEEEcCCHHHHHHHHH-h---C----C--eEEeCCCCccHHHHHH
Confidence 466788999988864 7777888887642 359999988887766643 1 2 0 11121111 1222
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
... +...+|+++...+- ...+..+.+.|+++|+++...
T Consensus 245 ~~~-~~~~vd~vld~~~~---------------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 245 DLT-DGRGADYAFEAVGR---------------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred HHc-CCCCCCEEEEcCCC---------------hHHHHHHHHHhhcCCeEEEEe
Confidence 222 22357877765211 256788899999999987654
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=6.4 Score=34.48 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=52.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------- 167 (267)
+.++|=.|++. .++..+++.+-. .+.+|+.++.+++..+.+.+.+.... ...++.++..|..+....
T Consensus 14 gk~~lITGas~-GIG~~~a~~La~--~G~~Vil~~R~~~~~~~~~~~l~~~~---~~~~v~~~~~Dl~d~~sv~~~~~~~ 87 (313)
T PRK05854 14 GKRAVVTGASD-GLGLGLARRLAA--AGAEVILPVRNRAKGEAAVAAIRTAV---PDAKLSLRALDLSSLASVAALGEQL 87 (313)
T ss_pred CCEEEEeCCCC-hHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhC---CCCceEEEEecCCCHHHHHHHHHHH
Confidence 56788777755 455555554422 15799999999887776666654432 123566666666554331
Q ss_pred CCCCCcEEEEEEeCCCC
Q 041272 168 VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~l 184 (267)
......+|+++.|.+..
T Consensus 88 ~~~~~~iD~li~nAG~~ 104 (313)
T PRK05854 88 RAEGRPIHLLINNAGVM 104 (313)
T ss_pred HHhCCCccEEEECCccc
Confidence 11224689999998764
|
|
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=89.65 E-value=4.4 Score=36.58 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=35.5
Q ss_pred hcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 91 VVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
.++++.+||=.|+ |. |..+..+|+..+ .+++.++.+++..+.+++
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G-----~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAG-----ANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcC-----CeEEEEeCCHHHHHHHHH
Confidence 4667889999997 43 777788888764 678889999988888865
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.63 E-value=2.7 Score=37.22 Aligned_cols=97 Identities=13% Similarity=0.036 Sum_probs=58.7
Q ss_pred CEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-------cc--cccccceEEEecChhhh
Q 041272 96 DTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-------TS--KAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 96 ~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-------~~--~~~~~~v~~~~~~~~~l 164 (267)
.+|-=||+|+ ..++..++.. +.+|+.+|.+++.++.+++.+... +. .....++++.. ++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~----~l 77 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA----TI 77 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC----CH
Confidence 4788888885 3444445543 579999999999888776655421 10 00112333321 22
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
.+.. ...|+|+-+. ....+.+..+++++-+.++|+-+|
T Consensus 78 ~~av---~~aDlViEav----------pE~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 78 EACV---ADADFIQESA----------PEREALKLELHERISRAAKPDAII 115 (321)
T ss_pred HHHh---cCCCEEEECC----------cCCHHHHHHHHHHHHHhCCCCeEE
Confidence 2221 2467888773 223455678899999999998744
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=6.6 Score=32.49 Aligned_cols=82 Identities=16% Similarity=0.041 Sum_probs=50.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC---
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV--- 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~--- 168 (267)
+.++|-.| |+|.++..+++++-. .+.+|+.++.++...+...+.+...+ .++.++..|..+... ..
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~--~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAK--EGVNVGLLARTEENLKAVAEEVEAYG-----VKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhC-----CeEEEEECCCCCHHHHHHHHHHH
Confidence 46788888 477788877765432 25799999999876665554444322 456666655443322 11
Q ss_pred -CCCCcEEEEEEeCCCC
Q 041272 169 -PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~l 184 (267)
.....+|.++.+.+..
T Consensus 79 ~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 79 KNELGSIDILINNAGIS 95 (239)
T ss_pred HHHcCCccEEEEcCccc
Confidence 1113589999887653
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.79 Score=41.15 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=60.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+|++|+|..|-.|.-|..+|..+.. .++++|+|.++.-.+..++.+...| ...++.+.+|.... ..+..-.
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n---~gki~afe~d~~r~~tl~~~l~~ag----~~~~~~~~~df~~t-~~~~~~~ 283 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRN---QGKIYAFERDAKRAATLRKLLKIAG----VSIVESVEGDFLNT-ATPEKFR 283 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhc---cCCcchhhhhhHHHHHHHHHHHHcC----CCccccccccccCC-CCccccc
Confidence 46789999999999999999988754 6899999999999999999998877 45555555444332 1222222
Q ss_pred cEEEEEEeCC
Q 041272 173 AVRLVAFNLG 182 (267)
Q Consensus 173 ~~d~ii~~~~ 182 (267)
.+-.++.+++
T Consensus 284 ~v~~iL~Dps 293 (413)
T KOG2360|consen 284 DVTYILVDPS 293 (413)
T ss_pred ceeEEEeCCC
Confidence 4667777753
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=3.4 Score=35.45 Aligned_cols=118 Identities=10% Similarity=0.080 Sum_probs=61.3
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c--
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I-- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~-- 167 (267)
.++.||=.|.++ +.++..+|+.+-. -+.+|+.++.++...+..++...+.+ .. ..+..|..+... .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~--~G~~Vil~~r~~~~~~~~~~~~~~~~-----~~-~~~~~Dv~d~~~v~~~~~ 75 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFE--QGAELAFTYLNEALKKRVEPIAQELG-----SD-YVYELDVSKPEHFKSLAE 75 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHH--CCCEEEEEecCHHHHHHHHHHHHhcC-----Cc-eEEEecCCCHHHHHHHHH
Confidence 367888889863 5566666665432 15789999988643233333222222 12 234444443322 1
Q ss_pred --CCCCCcEEEEEEeCCCCCCC--CCceee-ch-----------hhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGG--DKSVIT-TS-----------ETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~--d~~~~~-~~-----------~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
......+|+++.|.+..+.. ...+.. .. ..+-.+.+.+...++.+|.++.+.
T Consensus 76 ~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 76 SLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred HHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 11224689999998875321 011111 11 112334556667777778766543
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.46 E-value=3.8 Score=35.50 Aligned_cols=97 Identities=20% Similarity=0.136 Sum_probs=54.6
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc--------------ccccceEEEec
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK--------------AEKGLVKLFNM 159 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~--------------~~~~~v~~~~~ 159 (267)
.+|.=||+|. | .++..+++. +.+|+.+|.+++.++.+++++++.... ....++.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-- 75 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-- 75 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe--
Confidence 3677788875 2 233333332 468999999999999888765332100 001233322
Q ss_pred ChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 160 CHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 160 ~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
.++.+.. ...|+|+...+ ...+....+++++...++++-++
T Consensus 76 --~d~~~a~---~~aDlVieavp----------e~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 76 --TDLAEAV---KDADLVIEAVP----------EDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred --CCHHHHh---cCCCEEEEecc----------CCHHHHHHHHHHHHhhCCCCCEE
Confidence 1222211 14677877732 12334567788888887777655
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.44 E-value=6.4 Score=33.31 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=61.1
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCCh---HHHHHHHHHHhhccccccccceEEEecChhhhhh---
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQS---EALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE--- 166 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~---~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~--- 166 (267)
.++++|-.|.++ +.++..+|+.+-. .+.+|+.++.+. +.++...+.++ ..++.++..|..+...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~--~G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~ 76 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHN--AGAKLVFTYAGERLEKEVRELADTLE-------GQESLLLPCDVTSDEEITA 76 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH--CCCEEEEecCcccchHHHHHHHHHcC-------CCceEEEecCCCCHHHHHH
Confidence 367899999873 6677777765533 157888887653 23333322211 1345555544443322
Q ss_pred c----CCCCCcEEEEEEeCCCCCCCC--Ccee-echhh-----------HHHHHHHHHhcccCCcEEEEEE
Q 041272 167 I----VPKSTAVRLVAFNLGYLPGGD--KSVI-TTSET-----------TKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~----~~~~~~~d~ii~~~~~lp~~d--~~~~-~~~~~-----------~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
. ...-..+|+++.|.+..+..+ ..+. ...+. .-...+.+.+.++++|.++.+.
T Consensus 77 ~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 77 CFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred HHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 1 112246899999887643210 1111 11111 1223456667777788776543
|
|
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=89.29 E-value=6.4 Score=34.60 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=60.3
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l~ 165 (267)
.++++.+||=.|||. |..+..+|+..|. ..+++++.+++..+.+++ .+ . -.++.... ..+.
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~----~~v~~~~~~~~~~~~~~~----~g----a--~~v~~~~~~~~~~~i~ 230 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGA----ERIIAMSRHEDRQALARE----FG----A--TDIVAERGEEAVARVR 230 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHH----cC----C--ceEecCCcccHHHHHH
Confidence 456788887788876 7777888888643 358999988765555543 22 0 11111111 1122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
... .+..+|.++...+- ...+..+.+.|+++|.++....
T Consensus 231 ~~~-~~~~~d~il~~~g~---------------~~~~~~~~~~l~~~g~~v~~g~ 269 (345)
T cd08287 231 ELT-GGVGADAVLECVGT---------------QESMEQAIAIARPGGRVGYVGV 269 (345)
T ss_pred Hhc-CCCCCCEEEECCCC---------------HHHHHHHHHhhccCCEEEEecc
Confidence 222 22346777654211 3578888999999999976543
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.19 Score=41.61 Aligned_cols=84 Identities=23% Similarity=0.192 Sum_probs=59.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC---
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV--- 168 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~--- 168 (267)
..++.+.+|.--|.|..+..+.+... ..+++++|.+|.+-+.|+-...+.- .+++..+.+...++..++
T Consensus 41 pv~g~sf~DmTfGagGHt~~ilqk~s----e~k~yalDrDP~A~~La~~~s~el~----~~~l~a~Lg~Fs~~~~l~~~~ 112 (303)
T KOG2782|consen 41 PVRGRSFVDMTFGAGGHTSSILQKHS----ELKNYALDRDPVARKLAHFHSDELM----HPTLKAVLGNFSYIKSLIADT 112 (303)
T ss_pred CCCCceEEEEeccCCcchHHHHHhCc----HhhhhhhccChHHHHHHHHhhHhhc----chhHHHHHhhhHHHHHHHHHh
Confidence 34788999999999999999998865 4899999999999888887664321 223333333344443322
Q ss_pred -CCCCcEEEEEEeCCC
Q 041272 169 -PKSTAVRLVAFNLGY 183 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~ 183 (267)
-.+..+|-++++++.
T Consensus 113 gl~~~~vDGiLmDlGc 128 (303)
T KOG2782|consen 113 GLLDVGVDGILMDLGC 128 (303)
T ss_pred CCCcCCcceEEeecCc
Confidence 224478999888765
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=89.19 E-value=8.1 Score=33.67 Aligned_cols=92 Identities=11% Similarity=0.027 Sum_probs=56.4
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
.++++.+||=.|||. |..+..+++.. +.+|+.++.+++..+.+++ .+ .. ..+... ..
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~-----g~~v~~~~~~~~~~~~~~~----~g----~~--~~~~~~-~~------ 221 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQ-----GAEVFAFTRSGEHQELARE----LG----AD--WAGDSD-DL------ 221 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC-----CCeEEEEcCChHHHHHHHH----hC----Cc--EEeccC-cc------
Confidence 466788888888775 55666677765 4689999988876666643 12 00 111100 00
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
....+|.++...+ ....++++.+.|+++|.++...
T Consensus 222 ~~~~vD~vi~~~~---------------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 222 PPEPLDAAIIFAP---------------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred CCCcccEEEEcCC---------------cHHHHHHHHHHhhcCCEEEEEc
Confidence 1224666654311 0257888999999999998654
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.19 E-value=13 Score=31.66 Aligned_cols=128 Identities=11% Similarity=0.079 Sum_probs=84.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-hhhhcCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-RMEEIVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~~ 170 (267)
++++.+ |...||+=.++..+.+. .-++.++|+-++-...-++++.. ..++.+..+|.- .+...+++
T Consensus 87 lN~~~~-l~~YpGSP~lA~~llR~------qDRl~l~ELHp~D~~~L~~~f~~------d~~vrv~~~DG~~~l~a~LPP 153 (279)
T COG2961 87 LNPGGG-LRYYPGSPLLARQLLRE------QDRLVLTELHPSDAPLLRNNFAG------DRRVRVLRGDGFLALKAHLPP 153 (279)
T ss_pred hCCCCC-cccCCCCHHHHHHHcch------hceeeeeecCccHHHHHHHHhCC------CcceEEEecCcHHHHhhhCCC
Confidence 455555 89999999998888865 35899999999988888888874 567888776554 45556666
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCce
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW 245 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (267)
...=-+|+.+++|=- -...+...+.+++.++. =++|...|--+. ...+.++.+.+.++..+.
T Consensus 154 ~erRglVLIDPPfE~------~~eY~rvv~~l~~~~kR-f~~g~yaiWYPi------k~r~~~~~f~~~L~~~~i 215 (279)
T COG2961 154 KERRGLVLIDPPFEL------KDEYQRVVEALAEAYKR-FATGTYAIWYPI------KDRRQIRRFLRALEALGI 215 (279)
T ss_pred CCcceEEEeCCCccc------ccHHHHHHHHHHHHHHh-hcCceEEEEEee------cchHHHHHHHHHHhhcCc
Confidence 555668888865511 11233334455555554 367777553331 245666777776665544
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=89.17 E-value=3.3 Score=39.59 Aligned_cols=90 Identities=10% Similarity=0.011 Sum_probs=53.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc----ccccceEEEecChhhhhhc
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK----AEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~----~~~~~v~~~~~~~~~l~~~ 167 (267)
.+.|.+||-.|+ +|.++..+++++-. .+.+|++++.+++.++...+.+...... ....++.++.+|..+....
T Consensus 77 ~~~gKvVLVTGA-TGgIG~aLAr~LLk--~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 77 TKDEDLAFVAGA-TGKVGSRTVRELLK--LGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cCCCCEEEEECC-CCHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 456778887775 56777777765532 1578999999987766554433321100 0013577777776654443
Q ss_pred CCCCCcEEEEEEeCCCC
Q 041272 168 VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~l 184 (267)
...-..+|++|.+.+..
T Consensus 154 ~~aLggiDiVVn~AG~~ 170 (576)
T PLN03209 154 GPALGNASVVICCIGAS 170 (576)
T ss_pred HHHhcCCCEEEEccccc
Confidence 21112578888887653
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=89.15 E-value=3.8 Score=35.83 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=53.6
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+.+|+=+|.|. |......++.. +.+|+.+|.+++..+.++. .+ .+++. ..++.+...
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-----Ga~V~v~~r~~~~~~~~~~----~G-------~~~~~--~~~l~~~l~--- 209 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-----GANVTVGARKSAHLARITE----MG-------LSPFH--LSELAEEVG--- 209 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-----CCEEEEEECCHHHHHHHHH----cC-------Ceeec--HHHHHHHhC---
Confidence 578999999986 44445555554 4699999999876555543 22 12221 123333332
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.+|+|+...+. .-+-+++.+.++||++++-.
T Consensus 210 ~aDiVI~t~p~---------------~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 210 KIDIIFNTIPA---------------LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred CCCEEEECCCh---------------hhhhHHHHHcCCCCcEEEEE
Confidence 47888876421 12335667788998877533
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.04 E-value=5.5 Score=35.17 Aligned_cols=116 Identities=15% Similarity=0.061 Sum_probs=58.7
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.+.+|.=+|+|. |.....++...+- ..+++-+|++++.++--..-+..... ...++.+..++.+++.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~---~~el~L~D~~~~~~~g~~~Dl~~~~~--~~~~~~i~~~~~~~~~------ 72 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGI---ADELVIIDINKEKAEGDAMDLSHAVP--FTSPTKIYAGDYSDCK------ 72 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCC---CCEEEEEeCCCchhHHHHHHHHhhcc--ccCCeEEEeCCHHHhC------
Confidence 3467999999977 5555554433332 24799999988764333332322110 1123444433333322
Q ss_pred CcEEEEEEeCCCCCCCCCceee----chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVIT----TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..|+++...+....+...-.. ..+-..++.+++.+. .|.|++++...+
T Consensus 73 -~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvsNP 124 (315)
T PRK00066 73 -DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNP 124 (315)
T ss_pred -CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCc
Confidence 467777776653322111111 111123333333333 589999887654
|
|
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=88.96 E-value=3.8 Score=36.53 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=61.0
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe---cCh-hhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN---MCH-SRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~---~~~-~~l~ 165 (267)
.+.++.+||=+|+|. |..+..+|+..+. ..|+++|.+++..+.+++. + ...+..+. .+. ..+.
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~----~~v~~~~~~~~~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~ 245 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFGA----PRIVIVDVDDERLSVAKQL----G----ADEIVLVSTNIEDVESEVE 245 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHh----C----CCEEEecCcccccHHHHHH
Confidence 456788999888764 7777888887653 4689999988777766542 1 01111110 011 1111
Q ss_pred hcC-CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIV-PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~-~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
... .....+|+++...+. ...+..+.+.|+++|+++...
T Consensus 246 ~~~~~~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 246 EIQKAMGGGIDVSFDCVGF---------------NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred HHhhhcCCCCCEEEECCCC---------------HHHHHHHHHHHhcCCEEEEEc
Confidence 110 012257777765321 256888899999999987654
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=88.84 E-value=1.2 Score=38.16 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=33.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCC-CCCcEEEEEeCChH
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADE-SSAGCVYGLDIQSE 133 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~-~p~~~v~giD~s~~ 133 (267)
.+.++..++|+|||.|.++..+++.++.. .+...++.||....
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 45678899999999999999999987420 02468999998654
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.83 E-value=6.4 Score=33.52 Aligned_cols=85 Identities=6% Similarity=-0.009 Sum_probs=45.8
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh---hc--
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME---EI-- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~---~~-- 167 (267)
.+.++|=.|.++ +.++..+|+.+-. .+.+|+.++.+....+.+++..... ..+.++..|..+.. ..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~--~G~~vil~~r~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHR--EGAELAFTYQNDKLKGRVEEFAAQL------GSDIVLPCDVAEDASIDAMFA 76 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHH--CCCEEEEEecchhHHHHHHHHHhcc------CCceEeecCCCCHHHHHHHHH
Confidence 356888889876 3666666655432 1578988887743223332222221 22334444444322 11
Q ss_pred --CCCCCcEEEEEEeCCCCCC
Q 041272 168 --VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~ 186 (267)
......+|+++.|.+..+.
T Consensus 77 ~~~~~~g~iD~linnAg~~~~ 97 (262)
T PRK07984 77 ELGKVWPKFDGFVHSIGFAPG 97 (262)
T ss_pred HHHhhcCCCCEEEECCccCCc
Confidence 1112368999999887543
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.65 E-value=2.9 Score=36.33 Aligned_cols=97 Identities=10% Similarity=0.153 Sum_probs=58.5
Q ss_pred CEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-------------ccccceEEEecC
Q 041272 96 DTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-------------AEKGLVKLFNMC 160 (267)
Q Consensus 96 ~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-------------~~~~~v~~~~~~ 160 (267)
.+|-=||+|+ +.++..++.. +.+|+.+|.+++.++.+++++.+.-.. ....++++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~--- 76 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFT--- 76 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEee---
Confidence 3777888885 3444445544 579999999999999888775542100 001222222
Q ss_pred hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcc-cCCcEEE
Q 041272 161 HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL-IPGGLIS 216 (267)
Q Consensus 161 ~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~L-kpgG~l~ 216 (267)
.++... ...|+|+-. +....+...+++.++-+.+ +|+.++.
T Consensus 77 -~~~~~~----~~~d~ViEa----------v~E~~~~K~~l~~~l~~~~~~~~~il~ 118 (286)
T PRK07819 77 -TDLGDF----ADRQLVIEA----------VVEDEAVKTEIFAELDKVVTDPDAVLA 118 (286)
T ss_pred -CCHHHh----CCCCEEEEe----------cccCHHHHHHHHHHHHHhhCCCCcEEE
Confidence 122111 246777776 2334556678888888888 6776663
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.63 E-value=9.2 Score=32.53 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=46.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.++++|=.|++.| ++..+++.+-. .+.+|+.++.+ +.++...+.+++.+ .++.++..|..+... .
T Consensus 5 ~~k~vlItGas~g-IG~aia~~l~~--~G~~vi~~~r~-~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 5 ENKVAVITGASTG-IGQASAIALAQ--EGAYVLAVDIA-EAVSETVDKIKSNG-----GKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHH--CCCEEEEEeCc-HHHHHHHHHHHhcC-----CeEEEEEeecCCHHHHHHHHHH
Confidence 3567887776654 55555554422 15799999998 44554444444322 345555544443221 1
Q ss_pred -CCCCCcEEEEEEeCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp 185 (267)
......+|+++.+.+...
T Consensus 76 ~~~~~g~id~li~~Ag~~~ 94 (272)
T PRK08589 76 IKEQFGRVDVLFNNAGVDN 94 (272)
T ss_pred HHHHcCCcCEEEECCCCCC
Confidence 111235899999987643
|
|
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.59 E-value=7.7 Score=34.08 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=56.5
Q ss_pred hcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-c
Q 041272 91 VVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-I 167 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~ 167 (267)
.+.++.+||=.|+ |. |..+..+|+..+ +++++++.+. ..+.++ ..+ .. .+.......... .
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g-----~~vi~~~~~~-~~~~~~----~~g----~~--~~~~~~~~~~~~~~ 237 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRG-----AIVIAVAGAA-KEEAVR----ALG----AD--TVILRDAPLLADAK 237 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcC-----CEEEEEeCch-hhHHHH----hcC----Ce--EEEeCCCccHHHHH
Confidence 4678899999998 33 777788888764 5788887553 444443 223 11 111111111111 1
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
......+|+++...+ ...+..+.+.|+++|.++..
T Consensus 238 ~~~~~~~d~vi~~~g----------------~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 238 ALGGEPVDVVADVVG----------------GPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred hhCCCCCcEEEecCC----------------HHHHHHHHHHhccCCEEEEe
Confidence 112235888876532 14677888999999998754
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=8.9 Score=32.05 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=51.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.+++||-.|+ +|.++..+++.+-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+... .
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 81 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAG--AGAHVLVNGRNAATLEAAVAALRAAG-----GAAEALAFDIADEEAVAAAFAR 81 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEccCCCHHHHHHHHHH
Confidence 4678888885 56667666665432 15799999999887776666555433 345566555443221 1
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 82 ~~~~~~~id~vi~~ag~~ 99 (256)
T PRK06124 82 IDAEHGRLDILVNNVGAR 99 (256)
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 11123578999988763
|
|
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=88.46 E-value=9.1 Score=32.63 Aligned_cols=97 Identities=23% Similarity=0.242 Sum_probs=60.0
Q ss_pred hcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhh
Q 041272 91 VVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRM 164 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l 164 (267)
.+.++.+||=.|+ | .|..+..+++..+ .+|++++.+++..+.+++ .+ .. .++.... ..+
T Consensus 133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~~g-----~~v~~~~~~~~~~~~~~~----~g----~~--~~~~~~~~~~~~~~ 197 (320)
T cd05286 133 PVKPGDTVLVHAAAGGVGLLLTQWAKALG-----ATVIGTVSSEEKAELARA----AG----AD--HVINYRDEDFVERV 197 (320)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC-----CEEEEEcCCHHHHHHHHH----CC----CC--EEEeCCchhHHHHH
Confidence 4567889999994 3 4778888888764 689999988887776643 22 11 1111111 112
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.... ....+|+++...+- ..+..+.+.|+++|.++...
T Consensus 198 ~~~~-~~~~~d~vl~~~~~----------------~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 198 REIT-GGRGVDVVYDGVGK----------------DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred HHHc-CCCCeeEEEECCCc----------------HhHHHHHHhhccCcEEEEEe
Confidence 2222 22358888765321 35667788899999987553
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.34 E-value=5 Score=33.85 Aligned_cols=86 Identities=9% Similarity=0.078 Sum_probs=52.5
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHH-HHHHHHHHhhccccccccceEEEecChhhhhh----
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA-LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---- 166 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~-i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---- 166 (267)
+..+.+||-.|++ |.++..+++.+-. .++.+|+.++.+++. ++.+.+.++..+ ..+++++..|..+...
T Consensus 5 ~~~~~~vlItGas-~giG~~la~~l~~-~gg~~V~~~~r~~~~~~~~~~~~l~~~~----~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 5 VGNPQTILLLGGT-SEIGLAICERYLK-NAPARVVLAALPDDPRRDAAVAQMKAAG----ASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred cCCCcEEEEEcCC-cHHHHHHHHHHHh-cCCCeEEEEeCCcchhHHHHHHHHHhcC----CCceEEEEecCCChHHHHHH
Confidence 3456789998984 5677777765422 013689999998774 665555555433 2367777666543221
Q ss_pred ---cCCCCCcEEEEEEeCCCC
Q 041272 167 ---IVPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 167 ---~~~~~~~~d~ii~~~~~l 184 (267)
... ...+|.++.+.+..
T Consensus 79 ~~~~~~-~g~id~li~~ag~~ 98 (253)
T PRK07904 79 IDAAFA-GGDVDVAIVAFGLL 98 (253)
T ss_pred HHHHHh-cCCCCEEEEeeecC
Confidence 121 24689888887663
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=8.7 Score=33.17 Aligned_cols=118 Identities=13% Similarity=-0.055 Sum_probs=61.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChH-HHHHHHHHHhhccccccccceEEEecChhhhhh---cC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE-ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~-~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~- 168 (267)
.+++||-.|++ |.++..+++++-. .+.+|+.++.++. ..+.....++..+ .++.++..|..+... ..
T Consensus 45 ~~k~iLItGas-ggIG~~la~~l~~--~G~~V~l~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~ 116 (290)
T PRK06701 45 KGKVALITGGD-SGIGRAVAVLFAK--EGADIAIVYLDEHEDANETKQRVEKEG-----VKCLLIPGDVSDEAFCKDAVE 116 (290)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH--CCCEEEEEeCCcchHHHHHHHHHHhcC-----CeEEEEEccCCCHHHHHHHHH
Confidence 36688888864 5556666654432 1578999988753 3333333333322 356666555543322 11
Q ss_pred ---CCCCcEEEEEEeCCCCCCCCCcee-----------echhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 ---PKSTAVRLVAFNLGYLPGGDKSVI-----------TTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~lp~~d~~~~-----------~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.....+|.++.+.+.......... ........+++.+.+.++++|.++++.
T Consensus 117 ~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 117 ETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 111357899988765321110000 011223455566667677777776544
|
|
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.16 E-value=7.9 Score=33.87 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=60.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec----C-hhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM----C-HSR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~----~-~~~ 163 (267)
..++++.+||=.|+|. |..+..+|+... +.+|++++.+++..+.+++ + + .. .++.. + ...
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~----g~~v~~~~~~~~~~~~~~~-~---g----~~--~v~~~~~~~~~~~~ 223 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVF----NAKVIAVDINDDKLALAKE-V---G----AD--LTINSKRVEDVAKI 223 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhC----CCeEEEEeCChHHHHHHHH-c---C----Cc--EEecccccccHHHH
Confidence 3467889999999765 677777887631 3689999999988888754 2 2 11 11111 1 111
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+..... .+|.++.+.. ....++.+.+.|+++|.++...
T Consensus 224 v~~~~~---~~d~vi~~~~---------------~~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 224 IQEKTG---GAHAAVVTAV---------------AKAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred HHHhcC---CCcEEEEeCC---------------CHHHHHHHHHhccCCCEEEEEe
Confidence 222211 3564443311 0357888999999999997654
|
|
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.14 E-value=9.3 Score=33.77 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=59.5
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l~ 165 (267)
.+.++.+||=.|+|. |..+..+|+..|. ..++++|.+++..+.+++. + . . .++.... ..+.
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~----~~v~~~~~~~~~~~~~~~~----g----~-~-~v~~~~~~~~~~~~~ 236 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARLKNP----KKLIVLDLKDERLALARKF----G----A-D-VVLNPPEVDVVEKIK 236 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEEcCCHHHHHHHHHc----C----C-c-EEecCCCcCHHHHHH
Confidence 456788887777765 6777888888753 5688999988776655441 2 1 1 1111111 1122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
... ....+|+++...+- ...+..+.+.|+++|+++...
T Consensus 237 ~~~-~~~~vdvvld~~g~---------------~~~~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 237 ELT-GGYGCDIYIEATGH---------------PSAVEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred HHh-CCCCCCEEEECCCC---------------hHHHHHHHHHhhcCCEEEEEc
Confidence 221 22247877765221 246778899999999987653
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=88.04 E-value=3.1 Score=33.35 Aligned_cols=88 Identities=19% Similarity=0.221 Sum_probs=50.7
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.|.+|.=+|+|. |.....+++.+ +.+|+++|.+......+.. ..+.. .++.+.+.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-----G~~V~~~d~~~~~~~~~~~-----------~~~~~-----~~l~ell~--- 90 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-----GMRVIGYDRSPKPEEGADE-----------FGVEY-----VSLDELLA--- 90 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-----T-EEEEEESSCHHHHHHHH-----------TTEEE-----SSHHHHHH---
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-----CceeEEecccCChhhhccc-----------cccee-----eehhhhcc---
Confidence 578999999876 55555555555 4699999999886552211 11111 12222221
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
..|+|+..++.-+....- +=++.+..+|+|.+|
T Consensus 91 ~aDiv~~~~plt~~T~~l----------i~~~~l~~mk~ga~l 123 (178)
T PF02826_consen 91 QADIVSLHLPLTPETRGL----------INAEFLAKMKPGAVL 123 (178)
T ss_dssp H-SEEEE-SSSSTTTTTS----------BSHHHHHTSTTTEEE
T ss_pred hhhhhhhhhcccccccee----------eeeeeeeccccceEE
Confidence 478888886654432211 225567788988866
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=88.03 E-value=6.7 Score=34.39 Aligned_cols=98 Identities=23% Similarity=0.301 Sum_probs=59.2
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC---hhhhhhc
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC---HSRMEEI 167 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~ 167 (267)
+.++.+||=.|+|+ |..+..+|+..+ ..+|++++.+++..+.+++ .+ .. .++... ...+...
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g----~~~v~~~~~~~~~~~~~~~----~g----~~--~~~~~~~~~~~~i~~~ 230 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALT----PATVIAVDRSEEALKLAER----LG----AD--HVLNASDDVVEEVREL 230 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhC----CCcEEEEeCCHHHHHHHHH----hC----Cc--EEEcCCccHHHHHHHH
Confidence 56788999999765 666666777754 1689999988877665543 22 11 111111 1122222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
. ....+|+++...+. ...++.+.+.|+++|.++...
T Consensus 231 ~-~~~~~dvvld~~g~---------------~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 231 T-GGRGADAVIDFVGS---------------DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred h-CCCCCCEEEEcCCC---------------HHHHHHHHHHhhcCCEEEEEc
Confidence 2 22357888765321 256788889999999987654
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.00 E-value=1.6 Score=33.86 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=26.1
Q ss_pred EecCCCC--hHHHHHH-HhcCCCCCCcEEEEEeCChHHHHHHHHH
Q 041272 100 DATCGNG--YDTLMML-KMVADESSAGCVYGLDIQSEALKSTSSL 141 (267)
Q Consensus 100 DlGcG~G--~~~~~la-~~~~~~~p~~~v~giD~s~~~i~~a~~~ 141 (267)
|+|+..| ..+..++ +..+ ++.+|+++|.++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~---~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCG---PGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS-----SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcC---CCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6655554 2333 368999999999999999998
|
; PDB: 2PY6_A. |
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=87.98 E-value=7.4 Score=34.14 Aligned_cols=98 Identities=28% Similarity=0.395 Sum_probs=58.0
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l~ 165 (267)
.+.++.+||=.|+|. |..+..+|+..+. .+|++++.+++..+.+++ .+ .. .+.... ..+.
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~----~~v~~~~~~~~~~~~~~~----~g----~~---~~~~~~~~~~~~l~ 228 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGA----ARVFAVDPVPERLERAAA----LG----AE---PINFEDAEPVERVR 228 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCC----ceEEEEcCCHHHHHHHHH----hC----Ce---EEecCCcCHHHHHH
Confidence 456788888888665 6666777777531 379999888776665544 22 00 111111 1122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
... +...+|+++...+. ...+..+.+.|+++|.++...
T Consensus 229 ~~~-~~~~~dvvid~~~~---------------~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 229 EAT-EGRGADVVLEAVGG---------------AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred HHh-CCCCCCEEEECCCC---------------HHHHHHHHHhcccCCEEEEEC
Confidence 222 22357777765211 256788889999999986543
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.96 E-value=7.3 Score=32.37 Aligned_cols=84 Identities=12% Similarity=0.059 Sum_probs=50.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.+.+||=.| |+|.++..+++.+-. .+.+|+.++.++...+...+.+...+ .++.++..|..+....
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~--~g~~vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 76 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAR--EGASVVVADINAEGAERVAKQIVADG-----GTAIAVQVDVSDPDSAKAMADA 76 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHH
Confidence 356788777 566777777765532 15799999999876655555443322 2444454444433221
Q ss_pred -CCCCCcEEEEEEeCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp 185 (267)
......+|.++.+.+...
T Consensus 77 ~~~~~~~id~vi~~ag~~~ 95 (250)
T PRK07774 77 TVSAFGGIDYLVNNAAIYG 95 (250)
T ss_pred HHHHhCCCCEEEECCCCcC
Confidence 111125899999987643
|
|
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=87.91 E-value=7.8 Score=33.29 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=60.4
Q ss_pred cCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-hhhhhhcC
Q 041272 92 VRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-HSRMEEIV 168 (267)
Q Consensus 92 l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~ 168 (267)
+.++.+||=.|+ +.|..+..+|+..+ .+|+++..+++..+.+++ .+ ...+-....+ ...+...
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g-----~~v~~~~~~~~~~~~~~~----~g----~~~~~~~~~~~~~~i~~~- 205 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALG-----ATVTATTRSPERAALLKE----LG----ADEVVIDDGAIAEQLRAA- 205 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHh----cC----CcEEEecCccHHHHHHHh-
Confidence 567889998886 34788888888864 679999988877666643 22 1111100111 1122223
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...+|+++...+ ...+.++.+.|+++|+++...
T Consensus 206 --~~~~d~vl~~~~----------------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 206 --PGGFDKVLELVG----------------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred --CCCceEEEECCC----------------hHHHHHHHHHhccCCEEEEEc
Confidence 235888886532 146778889999999987643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=87.90 E-value=5.4 Score=34.71 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=60.4
Q ss_pred hcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhh
Q 041272 91 VVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRM 164 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l 164 (267)
.+.++.+||=.|. | .|..+..+|+.. +.+|++++.+++..+.+++.+.. . .++.... ..+
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~-----G~~vi~~~~~~~~~~~~~~~~g~-------~--~~~~~~~~~~~~~v 207 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLL-----GARVVGIAGSDEKCRWLVEELGF-------D--AAINYKTPDLAEAL 207 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHhhcCC-------c--eEEecCChhHHHHH
Confidence 3567889998884 3 377778888875 46899999888877776553221 1 1111111 112
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..... ..+|+++...+ ...+..+.+.|+++|.++...
T Consensus 208 ~~~~~--~~~d~vi~~~g----------------~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 208 KEAAP--DGIDVYFDNVG----------------GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred HHhcc--CCceEEEEcch----------------HHHHHHHHHhcCCCceEEEEe
Confidence 22221 35787776531 146788899999999987554
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.82 E-value=7 Score=34.31 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=60.3
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----h-
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----R- 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~- 163 (267)
..++++.+||=.|+|. |..+..+|+..|. ..+++++.+++..+.+++. + . -.++..... .
T Consensus 157 ~~~~~g~~VlI~g~g~vg~~~~~la~~~G~----~~v~~~~~~~~~~~~~~~~----g----~--~~~i~~~~~~~~~~~ 222 (341)
T cd08262 157 ARLTPGEVALVIGCGPIGLAVIAALKARGV----GPIVASDFSPERRALALAM----G----A--DIVVDPAADSPFAAW 222 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEECCCHHHHHHHHHc----C----C--cEEEcCCCcCHHHHH
Confidence 3467888998888755 6666777777653 4588899998888777652 1 0 111111111 1
Q ss_pred --hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 --MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 --l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.... ....+|+++...+- ...+.++.+.++++|.++....
T Consensus 223 ~~~~~~~-~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~g~~v~~g~ 265 (341)
T cd08262 223 AAELARA-GGPKPAVIFECVGA---------------PGLIQQIIEGAPPGGRIVVVGV 265 (341)
T ss_pred HHHHHHh-CCCCCCEEEECCCC---------------HHHHHHHHHHhccCCEEEEECC
Confidence 11111 12357877754211 1367778888999999876543
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.78 E-value=12 Score=31.33 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=60.9
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c--
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I-- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~-- 167 (267)
.++++|-.|.++ +.++..+|+.+-. .+.+|+.++.+....+..++. . ..++.++..|..+... .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~--~G~~Vi~~~r~~~~~~~~~~~----~----~~~~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKD--QGATVIYTYQNDRMKKSLQKL----V----DEEDLLVECDVASDESIERAFA 75 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHH--CCCEEEEecCchHHHHHHHhh----c----cCceeEEeCCCCCHHHHHHHHH
Confidence 367888888774 5677777765532 167899888874433222221 1 1235555555443222 1
Q ss_pred --CCCCCcEEEEEEeCCCCCCC--CCcee-ech-----------hhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGG--DKSVI-TTS-----------ETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~--d~~~~-~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
......+|+++.|.+..... ...+. ... ...-.+.+.+...++.+|.++.+.
T Consensus 76 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 76 TIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred HHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 11124689999998764310 01111 111 112334455667777778765543
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.76 E-value=4.2 Score=34.84 Aligned_cols=118 Identities=12% Similarity=0.046 Sum_probs=61.3
Q ss_pred CCCEEEEecCC-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh---hc--
Q 041272 94 KGDTVVDATCG-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME---EI-- 167 (267)
Q Consensus 94 ~~~~VLDlGcG-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~---~~-- 167 (267)
.+.++|=.|.+ ++.++..+|+.+-. .+.+|+.++.++...+..++..++.+ ....+..|..+.. ..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~--~G~~V~l~~r~~~~~~~~~~l~~~~~------~~~~~~~Dl~~~~~v~~~~~ 80 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRA--AGAELAFTYQGDALKKRVEPLAAELG------AFVAGHCDVTDEASIDAVFE 80 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHH--CCCEEEEEcCchHHHHHHHHHHHhcC------CceEEecCCCCHHHHHHHHH
Confidence 45688888986 46677777765532 15788887765433333333323222 2233444443322 11
Q ss_pred --CCCCCcEEEEEEeCCCCCCCC--Ccee-ec-----------hhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGD--KSVI-TT-----------SETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d--~~~~-~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
......+|+++.|.+...... ..+. .. ....-.+.+.+...++.+|.++.+.
T Consensus 81 ~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~is 148 (272)
T PRK08159 81 TLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLT 148 (272)
T ss_pred HHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 112246899999987643210 0111 11 1112344556667777778776554
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.63 E-value=3.5 Score=34.71 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=51.0
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh---hcCCCC
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME---EIVPKS 171 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~---~~~~~~ 171 (267)
+++||=.|++ |.++..+++.+-. .+.+|+.++.+++..+...+.+.... ..++.++..|..+.. ......
T Consensus 7 ~k~vlItG~~-~giG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 7 GKRVLITGAS-KGIGAAAAEAFAA--EGCHLHLVARDADALEALAADLRAAH----GVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhhc----CCceEEEEecCCCHHHHHHHHHHh
Confidence 5788888864 4466665554422 15699999999887777666555432 234555554444322 222222
Q ss_pred CcEEEEEEeCCCCC
Q 041272 172 TAVRLVAFNLGYLP 185 (267)
Q Consensus 172 ~~~d~ii~~~~~lp 185 (267)
..+|.++.+.+..+
T Consensus 80 g~id~lv~~ag~~~ 93 (259)
T PRK06125 80 GDIDILVNNAGAIP 93 (259)
T ss_pred CCCCEEEECCCCCC
Confidence 36899999987643
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=87.61 E-value=2.9 Score=38.96 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=55.2
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
-.|++|+=+|+|. |......++.+ +.+|+.+|.++.....|.. .+ ..+. . +.+...
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~-----Ga~VIV~e~dp~r~~eA~~----~G-------~~vv--~---leEal~-- 308 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA-----GARVIVTEIDPICALQALM----EG-------YQVL--T---LEDVVS-- 308 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCchhhHHHHh----cC-------Ceec--c---HHHHHh--
Confidence 3588999999997 66666666655 3689999999865444432 11 1111 1 112111
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHH-HHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKM-ALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~-~l~~~~~~LkpgG~l~i~~~ 220 (267)
..|+++...+. .. +..+.++.+|+||+++-+..
T Consensus 309 -~ADVVI~tTGt---------------~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 309 -EADIFVTTTGN---------------KDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred -hCCEEEECCCC---------------ccchHHHHHhcCCCCCEEEEcCC
Confidence 35777665221 23 34778889999999976544
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.60 E-value=12 Score=31.07 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=48.0
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C---
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V--- 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~--- 168 (267)
+++||=.|+. |.++..+++.+-. .+.+|++++.++...+.....+.. + .++.++..|..+.... .
T Consensus 5 ~~~vlItGas-g~iG~~l~~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~-~-----~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 5 GKVAIVTGAS-SGIGEGIARRFAA--EGARVVVTDRNEEAAERVAAEILA-G-----GRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred CcEEEEECCC-ChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHhc-C-----CeEEEEECCCCCHHHHHHHHHHH
Confidence 4577777754 4555555554322 146899999998776665554432 2 3455565554443322 1
Q ss_pred -CCCCcEEEEEEeCCCCC
Q 041272 169 -PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~lp 185 (267)
.....+|.++.+.+...
T Consensus 76 ~~~~~~~d~vi~~ag~~~ 93 (251)
T PRK07231 76 LERFGSVDILVNNAGTTH 93 (251)
T ss_pred HHHhCCCCEEEECCCCCC
Confidence 11235799999887643
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=87.52 E-value=0.68 Score=38.07 Aligned_cols=47 Identities=28% Similarity=0.256 Sum_probs=29.0
Q ss_pred EEEEEEeCCCCCCCC---Ccee-------echhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGD---KSVI-------TTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d---~~~~-------~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|+|+.++||--..+ .... .........++++.|+|||||.+++.+.
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEec
Confidence 589999998854443 0000 1123347788999999999999988765
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.30 E-value=12 Score=32.05 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=58.4
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcE-EEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~ 163 (267)
..++++.+||=.|+|. |..+..+|+..+ .+ |+.+..+++..+.+++ .+ . -.++.... ..
T Consensus 125 ~~~~~~~~vlI~g~g~vg~~~~~la~~~g-----~~~v~~~~~~~~~~~~~~~----~g----~--~~~~~~~~~~~~~~ 189 (312)
T cd08269 125 GWIRAGKTVAVIGAGFIGLLFLQLAAAAG-----ARRVIAIDRRPARLALARE----LG----A--TEVVTDDSEAIVER 189 (312)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-----CcEEEEECCCHHHHHHHHH----hC----C--ceEecCCCcCHHHH
Confidence 3456788888887654 666666777764 46 8999888776664432 22 1 11111111 12
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.+.. ....+|+++...+. ...+..+.+.|+++|.++...
T Consensus 190 l~~~~-~~~~vd~vld~~g~---------------~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 190 VRELT-GGAGADVVIEAVGH---------------QWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred HHHHc-CCCCCCEEEECCCC---------------HHHHHHHHHHhccCCEEEEEc
Confidence 22222 22357888765321 246778889999999997654
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=87.26 E-value=5.6 Score=34.05 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=58.7
Q ss_pred hcCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccc-eEEEecCh-hhhhh
Q 041272 91 VVRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL-VKLFNMCH-SRMEE 166 (267)
Q Consensus 91 ~l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~-v~~~~~~~-~~l~~ 166 (267)
.+.++.+||-.|| +.|..+..+++..+ .+|++++.+++..+.+++. + ... +.....+. ..+..
T Consensus 136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g-----~~v~~~~~~~~~~~~~~~~----g----~~~~~~~~~~~~~~~i~~ 202 (323)
T cd08241 136 RLQPGETVLVLGAAGGVGLAAVQLAKALG-----ARVIAAASSEEKLALARAL----G----ADHVIDYRDPDLRERVKA 202 (323)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHc----C----CceeeecCCccHHHHHHH
Confidence 4667899999998 23667777777753 6799999998877776431 2 111 01010011 11222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. ....+|.++.+.+ ...+..+.+.++++|.++...
T Consensus 203 ~~-~~~~~d~v~~~~g----------------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 203 LT-GGRGVDVVYDPVG----------------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred Hc-CCCCcEEEEECcc----------------HHHHHHHHHhhccCCEEEEEc
Confidence 22 2235788776532 134566778889999886543
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.21 E-value=7.8 Score=33.68 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=58.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-----
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV----- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~----- 168 (267)
.++.||==||-+|.-.....+.... +.+++-+-...+.++...+.+++.+. ..++..++.|..+..+..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~---G~~l~lvar~~rrl~~v~~~l~~~~~---~~~v~~~~~Dvs~~~~~~~~~~~ 84 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKR---GAKLVLVARRARRLERVAEELRKLGS---LEKVLVLQLDVSDEESVKKFVEW 84 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhC---CCceEEeehhhhhHHHHHHHHHHhCC---cCccEEEeCccCCHHHHHHHHHH
Confidence 4678888899887433333333332 57888888888888888777776652 125888888877765532
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
..-+.+|+.+.|.+...
T Consensus 85 ~~~~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 85 AIRHFGRVDVLVNNAGISL 103 (282)
T ss_pred HHHhcCCCCEEEecCcccc
Confidence 23457999999998855
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=87.16 E-value=0.67 Score=34.12 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhcccCCcEEEEE
Q 041272 196 ETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 196 ~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
+....+++.+++.|+|||.+++.
T Consensus 21 ~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 21 EGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCEEEEe
Confidence 45688999999999999999774
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.15 E-value=8.9 Score=31.86 Aligned_cols=84 Identities=10% Similarity=-0.047 Sum_probs=52.2
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------- 167 (267)
+.+||-.| |+|.++..+++++-. .+.+|+.++.+++.++...+.+.... ...++.++..|..+....
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~--~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAA--KGRDLALCARRTDRLEELKAELLARY---PGIKVAVAALDVNDHDQVFEVFAEF 75 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhhC---CCceEEEEEcCCCCHHHHHHHHHHH
Confidence 45788777 567777777776533 14689999999888776665554321 123566666655544321
Q ss_pred CCCCCcEEEEEEeCCCC
Q 041272 168 VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 76 ~~~~~~id~vi~~ag~~ 92 (248)
T PRK08251 76 RDELGGLDRVIVNAGIG 92 (248)
T ss_pred HHHcCCCCEEEECCCcC
Confidence 11123589999887764
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=87.15 E-value=8.8 Score=33.86 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=60.7
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe-cChhhhhhcCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN-MCHSRMEEIVPKS 171 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~~~ 171 (267)
+..+|.=+|+|. |......+...+. ..+++-+|++++..+--..-+..... ......+.. ++.+++.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~---~~el~LiD~~~~~~~g~a~Dl~~~~~--~~~~~~v~~~~dy~~~~------ 70 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGL---ADELVLVDVVEDKLKGEAMDLQHGSA--FLKNPKIEADKDYSVTA------ 70 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC---CCEEEEEeCCccHHHHHHHHHHHhhc--cCCCCEEEECCCHHHhC------
Confidence 456899999976 5555444433332 45899999988644322222222110 111123332 3333322
Q ss_pred CcEEEEEEeCCCCCCCCCcee----echhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVI----TTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+.|+|+...+..+.+...-. ...+...++.+.+.+. .|.|+++++..+
T Consensus 71 -~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 122 (312)
T cd05293 71 -NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNP 122 (312)
T ss_pred -CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccCh
Confidence 46788877665443221111 1223345566666666 899999887764
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.15 E-value=6.9 Score=33.93 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=54.4
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-------cc------cccccceEEEecC
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-------TS------KAEKGLVKLFNMC 160 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-------~~------~~~~~~v~~~~~~ 160 (267)
.+|.=||+|+ | .++..++.. +.+|+.+|.+++.++.+.+++.++ +. .....++.+..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-- 76 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT-- 76 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC--
Confidence 4677788876 2 333444433 468999999999988876554332 10 00001233221
Q ss_pred hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 161 HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 161 ~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
++.. . .+.|+|+...+ ........+++++...++|+.+++
T Consensus 77 --~~~~-~---~~aD~Vieavp----------e~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 77 --DLED-L---ADCDLVIEAAT----------EDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred --CHHH-h---cCCCEEEEcCc----------CCHHHHHHHHHHHHhhCCCCcEEE
Confidence 1211 1 14677777631 112334677888888889887664
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.85 E-value=6.3 Score=33.46 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=49.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~-- 168 (267)
.+.++|-.|++.| ++..+++.+-. .+.+|+.++.+++.++.+.+.+.... ..++.++..|..+... ..
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~i~~~~~~ 79 (263)
T PRK08339 7 SGKLAFTTASSKG-IGFGVARVLAR--AGADVILLSRNEENLKKAREKIKSES----NVDVSYIVADLTKREDLERTVKE 79 (263)
T ss_pred CCCEEEEeCCCCc-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhhc----CCceEEEEecCCCHHHHHHHHHH
Confidence 3667888787654 45444444322 15799999999887777666554421 1356666555544322 11
Q ss_pred -CCCCcEEEEEEeCCC
Q 041272 169 -PKSTAVRLVAFNLGY 183 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~ 183 (267)
.....+|+++.+.+.
T Consensus 80 ~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 80 LKNIGEPDIFFFSTGG 95 (263)
T ss_pred HHhhCCCcEEEECCCC
Confidence 112368999988765
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=86.75 E-value=11 Score=31.58 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=49.9
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-------c
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-------I 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-------~ 167 (267)
++++|=.|+ +|.++..+++.+-. .+.+|+.++.+++..+...+.+...+ .++.++..|..+... .
T Consensus 2 ~k~~lItGa-s~giG~~la~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 2 SKVALVTGA-GQGIGFAIAKRLVE--DGFKVAIVDYNEETAQAAADKLSKDG-----GKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred CCEEEEECC-CChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHHH
Confidence 456777774 45566666655432 15789999999887776666655433 345555555543321 1
Q ss_pred CCCCCcEEEEEEeCCCCC
Q 041272 168 VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp 185 (267)
......+|.++.+.+..+
T Consensus 74 ~~~~~~id~vi~~ag~~~ 91 (256)
T PRK08643 74 VDTFGDLNVVVNNAGVAP 91 (256)
T ss_pred HHHcCCCCEEEECCCCCC
Confidence 111235899999887643
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.72 E-value=5.8 Score=33.23 Aligned_cols=83 Identities=11% Similarity=0.072 Sum_probs=50.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~-- 168 (267)
.++++|-.|+++ .++..+++.+-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+... ..
T Consensus 8 ~~k~vlVtGas~-gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 8 HGKRALITGAST-GIGKRVALAYVE--AGAQVAIAARHLDALEKLADEIGTSG-----GKVVPVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHHHHHhcC-----CeEEEEEccCCCHHHHHHHHHH
Confidence 367889888755 455555544322 15789999999888777766665433 345555544443221 11
Q ss_pred --CCCCcEEEEEEeCCCC
Q 041272 169 --PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~l 184 (267)
.....+|.++.+.+..
T Consensus 80 ~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 80 VTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHhCCCCEEEECCCCC
Confidence 1113689999987754
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.71 E-value=5.6 Score=34.51 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=29.3
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHh
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~ 143 (267)
.+|.=||+|+ | .++..++.. +.+|+.+|.+++.++.+++.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHH
Confidence 3677888886 3 333444443 4689999999999988776544
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=86.70 E-value=14 Score=32.03 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=58.9
Q ss_pred hhcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----h
Q 041272 90 HVVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----R 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~ 163 (267)
..+.++.+||=.|+ | .|..+..+|+..| .+++.+.-+++..+.+++ . + .. .++..... .
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G-----~~v~~~~~~~~~~~~~~~-~---g----~~--~~~~~~~~~~~~~ 199 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAARG-----INVINLVRRDAGVAELRA-L---G----IG--PVVSTEQPGWQDK 199 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHCC-----CeEEEEecCHHHHHHHHh-c---C----CC--EEEcCCCchHHHH
Confidence 35678889998876 3 4788888888874 577777766666555543 1 2 11 11111111 1
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.... ....+|+++...+. ..+.++.+.|+++|+++...
T Consensus 200 i~~~~-~~~~~d~v~d~~g~----------------~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 200 VREAA-GGAPISVALDSVGG----------------KLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred HHHHh-CCCCCcEEEECCCC----------------hhHHHHHHhhcCCcEEEEEe
Confidence 22222 22358888765321 34577888999999987654
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=14 Score=31.95 Aligned_cols=85 Identities=14% Similarity=0.060 Sum_probs=51.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.+.+||=.|+ +|.++..+++.+-. .+.+|+.++.+++..+.+.+.+.... ...++.++..|..+....
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~--~G~~vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dl~d~~~v~~~~~~ 88 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAA--KGAHVVLAVRNLDKGKAAAARITAAT---PGADVTLQELDLTSLASVRAAADA 88 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhC---CCCceEEEECCCCCHHHHHHHHHH
Confidence 4567887775 55666666664432 15689999998887766655554321 023566666665544321
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|+++.+.+..
T Consensus 89 ~~~~~~~iD~li~nAg~~ 106 (306)
T PRK06197 89 LRAAYPRIDLLINNAGVM 106 (306)
T ss_pred HHhhCCCCCEEEECCccc
Confidence 11123689999998753
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.49 E-value=5.5 Score=33.18 Aligned_cols=85 Identities=13% Similarity=0.014 Sum_probs=50.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-----hhhh-
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-----RMEE- 166 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~- 166 (267)
.++.+||=.|+ +|.++..+++.+-. .+.+|+++|.+++.++...+.++..+ ..++.++..+.. ++..
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~--~G~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~d~~~~~~~~~~~~ 82 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYAR--HGATVILLGRTEEKLEAVYDEIEAAG----GPQPAIIPLDLLTATPQNYQQL 82 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHhcC----CCCceEEEecccCCCHHHHHHH
Confidence 36778999894 66777766665432 14699999999887766655555433 234444433321 1111
Q ss_pred ---cCCCCCcEEEEEEeCCCC
Q 041272 167 ---IVPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 167 ---~~~~~~~~d~ii~~~~~l 184 (267)
.......+|.++.+.+..
T Consensus 83 ~~~~~~~~~~id~vi~~Ag~~ 103 (247)
T PRK08945 83 ADTIEEQFGRLDGVLHNAGLL 103 (247)
T ss_pred HHHHHHHhCCCCEEEECCccc
Confidence 111113589999887653
|
|
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=86.37 E-value=11 Score=31.91 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=54.6
Q ss_pred cCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 92 VRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
+.++.+||=.|+ | .|..+..+++.. +.+|+.++.++ ..+.+++ .+ .. .++.....+... ..
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~-----g~~v~~~~~~~-~~~~~~~----~g----~~--~~~~~~~~~~~~-~~ 204 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKAR-----GARVIATASAA-NADFLRS----LG----AD--EVIDYTKGDFER-AA 204 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHc-----CCEEEEEecch-hHHHHHH----cC----CC--EEEeCCCCchhh-cc
Confidence 667889998886 3 366777777775 46788887666 5554432 22 01 111111111111 11
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
....+|+++...+. .....+.+.|+++|.++...
T Consensus 205 ~~~~~d~v~~~~~~----------------~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 205 APGGVDAVLDTVGG----------------ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred CCCCceEEEECCch----------------HHHHHHHHHHhcCcEEEEEc
Confidence 22357777765321 36677788899999987543
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.22 E-value=9.2 Score=31.90 Aligned_cols=83 Identities=13% Similarity=0.156 Sum_probs=48.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------- 167 (267)
+.+||=.|+++| ++..+++.+-. .+.+|+.++.+++.++...+.+...+ .++.++..|..+....
T Consensus 8 ~k~vlItGas~g-IG~~l~~~l~~--~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~ 79 (252)
T PRK07035 8 GKIALVTGASRG-IGEAIAKLLAQ--QGAHVIVSSRKLDGCQAVADAIVAAG-----GKAEALACHIGEMEQIDALFAHI 79 (252)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEEcCCCCHHHHHHHHHHH
Confidence 467888887654 55555544322 15699999999887776666655433 3445555444333221
Q ss_pred CCCCCcEEEEEEeCCCCC
Q 041272 168 VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp 185 (267)
...-..+|+++.+.+..+
T Consensus 80 ~~~~~~id~li~~ag~~~ 97 (252)
T PRK07035 80 RERHGRLDILVNNAAANP 97 (252)
T ss_pred HHHcCCCCEEEECCCcCC
Confidence 111125899998887643
|
|
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.15 E-value=6.3 Score=34.70 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=60.5
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-h----hh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-S----RM 164 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~----~l 164 (267)
.+.++.+||=.|+|. |..+..+|+.. +.+|++++.+++..+.+++ + + .. .++.... . .+
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~-----G~~vi~~~~~~~~~~~~~~-~---g----~~--~~i~~~~~~~~~~~~ 226 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASAL-----GARVIAVDIDDDKLELARE-L---G----AV--ATVNASEVEDVAAAV 226 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCeEEEEeCCHHHHHHHHH-h---C----CC--EEEccccchhHHHHH
Confidence 356788999999765 66777778776 4689999999887777743 2 2 11 1111111 1 12
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..... + .+|+++...+. ...+..+.+.|+++|.++...
T Consensus 227 ~~~~~-~-~~d~vi~~~g~---------------~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 227 RDLTG-G-GAHVSVDALGI---------------PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred HHHhC-C-CCCEEEEcCCC---------------HHHHHHHHHHhhcCCEEEEeC
Confidence 22222 2 57887765321 256778889999999987543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=86.07 E-value=9.9 Score=33.33 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=60.0
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcE-EEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRM 164 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l 164 (267)
.++++.+||=.|+|. |..+..+|+..+ .+ |++++.+++..+.+++ + + . -.++.... ..+
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g-----~~~v~~~~~s~~~~~~~~~-~---g----~--~~~~~~~~~~~~~~i 226 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASG-----ARKVIVSDLNEFRLEFAKK-L---G----A--DYTIDAAEEDLVEKV 226 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-----CcEEEEECCCHHHHHHHHH-h---C----C--cEEecCCccCHHHHH
Confidence 467888988888763 777777887764 45 8899988887776643 1 2 1 11121111 112
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.... .+..+|+++...+. ...+..+.+.|+++|.++...
T Consensus 227 ~~~~-~~~~vd~vld~~~~---------------~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 227 RELT-DGRGADVVIVATGS---------------PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred HHHh-CCcCCCEEEECCCC---------------hHHHHHHHHHhhcCCEEEEEe
Confidence 2222 22347887765321 246778889999999987643
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.03 E-value=8.5 Score=32.42 Aligned_cols=80 Identities=14% Similarity=0.037 Sum_probs=46.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.+.++|=.|++. .++..+++.+-. .+.+|+.++.+++.++...+.. + .++.++..|..+... .
T Consensus 5 ~~k~vlVtGas~-gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~---~-----~~~~~~~~D~~~~~~~~~~~~~ 73 (263)
T PRK06200 5 HGQVALITGGGS-GIGRALVERFLA--EGARVAVLERSAEKLASLRQRF---G-----DHVLVVEGDVTSYADNQRAVDQ 73 (263)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHh---C-----CcceEEEccCCCHHHHHHHHHH
Confidence 356888888654 456655554432 1578999999987766554432 1 234455544433221 1
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 74 ~~~~~g~id~li~~ag~~ 91 (263)
T PRK06200 74 TVDAFGKLDCFVGNAGIW 91 (263)
T ss_pred HHHhcCCCCEEEECCCCc
Confidence 11123689999998753
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=85.79 E-value=10 Score=32.83 Aligned_cols=96 Identities=13% Similarity=0.019 Sum_probs=57.7
Q ss_pred CCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-ChhhhhhcCCC
Q 041272 94 KGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHSRMEEIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~~ 170 (267)
.+.+||=.|+ |. |..+..+|+..| .+|+.++.+++..+.+++ .+ ...+--... ....+... .
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g-----~~v~~~~~~~~~~~~~~~----~g----~~~v~~~~~~~~~~~~~~-~- 210 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLG-----YEVVASTGKADAADYLKK----LG----AKEVIPREELQEESIKPL-E- 210 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC-----CeEEEEecCHHHHHHHHH----cC----CCEEEcchhHHHHHHHhh-c-
Confidence 4678988887 44 777778888764 689999999887776644 22 111100010 01112222 1
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...+|+++...+ ...+..+.+.|+++|+++....
T Consensus 211 ~~~~d~vld~~g----------------~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 211 KQRWAGAVDPVG----------------GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred cCCcCEEEECCc----------------HHHHHHHHHHhhcCCEEEEEee
Confidence 234777765421 1467788899999999977653
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.71 E-value=15 Score=30.80 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=49.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.+++||-.|++ |.++..+++.+-. .+.+|+.++.++..++.....++..+ .++.++..|..+....
T Consensus 10 ~~k~vlVtG~s-~gIG~~la~~l~~--~G~~vv~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~i~~~~~~ 81 (255)
T PRK06113 10 DGKCAIITGAG-AGIGKEIAITFAT--AGASVVVSDINADAANHVVDEIQQLG-----GQAFACRCDITSEQELSALADF 81 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 36789999955 4555555554322 15789999998887776655554422 3455555554433221
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 82 ~~~~~~~~d~li~~ag~~ 99 (255)
T PRK06113 82 ALSKLGKVDILVNNAGGG 99 (255)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 11123579999987653
|
|
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=85.58 E-value=9.3 Score=34.28 Aligned_cols=108 Identities=22% Similarity=0.247 Sum_probs=62.7
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC----hhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC----HSRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~----~~~l~ 165 (267)
.+.++.+||-.|+|. |..+..+|+..|. .+|+++|.+++..+.+++. + . ..+... ...+.
T Consensus 173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G~----~~vi~~~~~~~~~~~~~~~----g-----~--~~v~~~~~~~~~~i~ 237 (375)
T cd08282 173 GVQPGDTVAVFGAGPVGLMAAYSAILRGA----SRVYVVDHVPERLDLAESI----G-----A--IPIDFSDGDPVEQIL 237 (375)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHc----C-----C--eEeccCcccHHHHHH
Confidence 466788888888875 7777788877642 4799999998777766541 1 0 111111 11122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.... ..+|+++...+.-... ..........+.++.+.|+++|.+....
T Consensus 238 ~~~~--~~~d~v~d~~g~~~~~----~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 238 GLEP--GGVDRAVDCVGYEARD----RGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred HhhC--CCCCEEEECCCCcccc----cccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 2222 2477777664321000 0000122346888899999999996543
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.54 E-value=12 Score=33.04 Aligned_cols=82 Identities=12% Similarity=-0.037 Sum_probs=50.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------- 167 (267)
+.+||=.|+ +|.++..+++.+-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+....
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~--~G~~Vvl~~R~~~~l~~~~~~l~~~g-----~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFAR--RGAKVVLLARGEEGLEALAAEIRAAG-----GEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcC-----CcEEEEEecCCCHHHHHHHHHHH
Confidence 557887775 45566666554422 15789999999988877776665543 4566665555443221
Q ss_pred CCCCCcEEEEEEeCCCC
Q 041272 168 VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~l 184 (267)
...-..+|+++.+.+..
T Consensus 80 ~~~~g~iD~lInnAg~~ 96 (334)
T PRK07109 80 EEELGPIDTWVNNAMVT 96 (334)
T ss_pred HHHCCCCCEEEECCCcC
Confidence 11123689999887653
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=85.53 E-value=14 Score=28.29 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=57.8
Q ss_pred EEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 97 TVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 97 ~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
+|.=+|+ |. |.....+....+- ..+++-+|+.+...+--..-+..... ....+..+..++.+++. +.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l---~~ei~L~D~~~~~~~g~a~Dl~~~~~-~~~~~~~i~~~~~~~~~-------~a 70 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGL---ADEIVLIDINEDKAEGEALDLSHASA-PLPSPVRITSGDYEALK-------DA 70 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTT---SSEEEEEESSHHHHHHHHHHHHHHHH-GSTEEEEEEESSGGGGT-------TE
T ss_pred EEEEECCCChHHHHHHHHHHhCCC---CCceEEeccCcccceeeehhhhhhhh-hcccccccccccccccc-------cc
Confidence 6777888 65 6555555544333 46899999998743322222222110 01123333333333332 57
Q ss_pred EEEEEeCCCCCCCCCceee----chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVIT----TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|+++...+....+..+-.. ..+...++.+.+.+. .|.|.++++..
T Consensus 71 Divvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvtN 119 (141)
T PF00056_consen 71 DIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVTN 119 (141)
T ss_dssp SEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-SS
T ss_pred cEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeCC
Confidence 8888887764333222111 122234455555555 59999888765
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.35 E-value=3.5 Score=37.45 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=44.8
Q ss_pred CEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh---hhcCCCC
Q 041272 96 DTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM---EEIVPKS 171 (267)
Q Consensus 96 ~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l---~~~~~~~ 171 (267)
++||=||||. |........+.+ ..+|+..|.+.+..+.+..... .+++.++-|..+. .+.+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~----d~~V~iAdRs~~~~~~i~~~~~--------~~v~~~~vD~~d~~al~~li~-- 67 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG----DGEVTIADRSKEKCARIAELIG--------GKVEALQVDAADVDALVALIK-- 67 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC----CceEEEEeCCHHHHHHHHhhcc--------ccceeEEecccChHHHHHHHh--
Confidence 5799999965 444433322222 3699999999888777765432 2555555555444 33342
Q ss_pred CcEEEEEEeCCC
Q 041272 172 TAVRLVAFNLGY 183 (267)
Q Consensus 172 ~~~d~ii~~~~~ 183 (267)
++|+++...++
T Consensus 68 -~~d~VIn~~p~ 78 (389)
T COG1748 68 -DFDLVINAAPP 78 (389)
T ss_pred -cCCEEEEeCCc
Confidence 35888887544
|
|
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.30 E-value=6.4 Score=34.41 Aligned_cols=96 Identities=22% Similarity=0.217 Sum_probs=60.3
Q ss_pred hcCCCCEEEEecCC--CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 91 VVRKGDTVVDATCG--NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG--~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
.+.++.+||=.|++ .|..+..+|+..+ .+++.++.+++..+.+++. ...- .. .. ....++...
T Consensus 159 ~~~~~~~vlI~g~~g~~g~~~~~la~~~g-----~~vi~~~~~~~~~~~~~~~-~~~~----~~-~~---~~~~~v~~~- 223 (334)
T PRK13771 159 GVKKGETVLVTGAGGGVGIHAIQVAKALG-----AKVIAVTSSESKAKIVSKY-ADYV----IV-GS---KFSEEVKKI- 223 (334)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHH-HHHh----cC-ch---hHHHHHHhc-
Confidence 45678899999983 3788888888864 6899999998888777553 1100 00 00 001122221
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+|+++...+. ..+..+.+.|+++|.++....
T Consensus 224 ---~~~d~~ld~~g~----------------~~~~~~~~~l~~~G~~v~~g~ 256 (334)
T PRK13771 224 ---GGADIVIETVGT----------------PTLEESLRSLNMGGKIIQIGN 256 (334)
T ss_pred ---CCCcEEEEcCCh----------------HHHHHHHHHHhcCCEEEEEec
Confidence 136777765221 356788888999999876543
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.26 E-value=5.2 Score=33.46 Aligned_cols=82 Identities=13% Similarity=0.031 Sum_probs=51.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------- 167 (267)
+.+||-.|++ |.++..+++++-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+....
T Consensus 7 ~k~ilItGas-~~iG~~ia~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 7 GKVALVTGGA-AGIGRATALAFAR--EGAKVVVADRDAAGGEETVALIREAG-----GEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHHHH
Confidence 5688888864 5566666554432 15789999999887776666665433 4566666555433221
Q ss_pred CCCCCcEEEEEEeCCCC
Q 041272 168 VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 79 ~~~~g~id~li~~ag~~ 95 (253)
T PRK06172 79 IAAYGRLDYAFNNAGIE 95 (253)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 11113579999988764
|
|
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=85.24 E-value=14 Score=31.76 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=61.5
Q ss_pred hcCCCCEEEEe--cCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-
Q 041272 91 VVRKGDTVVDA--TCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI- 167 (267)
Q Consensus 91 ~l~~~~~VLDl--GcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~- 167 (267)
.+++|++||-- .-|.|.+...+++.. +.++++.--+.+-.+.|+++-.. ..|....+|+.+.
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~-----~a~tI~~asTaeK~~~akenG~~----------h~I~y~~eD~v~~V 207 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAV-----GAHTIATASTAEKHEIAKENGAE----------HPIDYSTEDYVDEV 207 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhc-----CcEEEEEeccHHHHHHHHhcCCc----------ceeeccchhHHHHH
Confidence 46789877653 334578888888876 46899998888887777775332 1222233444331
Q ss_pred --CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
.....-+|+++-..+- ..++.-+..|||+|.++-
T Consensus 208 ~kiTngKGVd~vyDsvG~----------------dt~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 208 KKITNGKGVDAVYDSVGK----------------DTFAKSLAALKPMGKMVS 243 (336)
T ss_pred HhccCCCCceeeeccccc----------------hhhHHHHHHhccCceEEE
Confidence 2222357777665432 567777889999999964
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=85.22 E-value=5.2 Score=39.52 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=63.3
Q ss_pred CEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-------------cccccceEEEecC
Q 041272 96 DTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS-------------KAEKGLVKLFNMC 160 (267)
Q Consensus 96 ~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~-------------~~~~~~v~~~~~~ 160 (267)
.+|-=||+|+ +.++..+|.. +..|+-+|.+++.++.+++++...-. .....+++...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-- 385 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-- 385 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC--
Confidence 3788899997 3455555554 57999999999999988877654210 00012232221
Q ss_pred hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 161 HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 161 ~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
++... .+.|+|+-. +....+.+.++++++-++++|+.+|.-
T Consensus 386 --~~~~~----~~aDlViEa----------v~E~l~~K~~vf~~l~~~~~~~~ilas 426 (714)
T TIGR02437 386 --SYAGF----DNVDIVVEA----------VVENPKVKAAVLAEVEQHVREDAILAS 426 (714)
T ss_pred --CHHHh----cCCCEEEEc----------CcccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 11111 246777776 334466778999999999999988743
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.03 E-value=11 Score=31.51 Aligned_cols=82 Identities=12% Similarity=-0.014 Sum_probs=49.9
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-------c
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-------I 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-------~ 167 (267)
+.++|=.|++ |.++..+++.+-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+... .
T Consensus 6 ~k~~lItGas-~giG~~ia~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~ 77 (254)
T PRK07478 6 GKVAIITGAS-SGIGRAAAKLFAR--EGAKVVVGARRQAELDQLVAEIRAEG-----GEAVALAGDVRDEAYAKALVALA 77 (254)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHHH
Confidence 5678876665 4555555554432 15789999999888777766665533 345555555443321 1
Q ss_pred CCCCCcEEEEEEeCCCC
Q 041272 168 VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 78 ~~~~~~id~li~~ag~~ 94 (254)
T PRK07478 78 VERFGGLDIAFNNAGTL 94 (254)
T ss_pred HHhcCCCCEEEECCCCC
Confidence 11123689999998764
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.03 E-value=4.4 Score=34.05 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=52.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.+.+||=.| |+|.++..+++++-. .+.+|+.++.+.+.++...+.+...+ .++.++..|..+....
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~i~~~~-----~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGE--AGARVVLSARKAEELEEAAAHLEALG-----IDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEEccCCCHHHHHHHHHH
Confidence 467888888 567778777776533 15689999999887776666555432 3556666555543322
Q ss_pred -CCCCCcEEEEEEeCCC
Q 041272 168 -VPKSTAVRLVAFNLGY 183 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~ 183 (267)
......+|.++.+.+.
T Consensus 83 ~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 83 TLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 1111357899888765
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.97 E-value=9.9 Score=32.77 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=53.3
Q ss_pred EEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-------cc-c-----ccccceEEEecCh
Q 041272 97 TVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-------TS-K-----AEKGLVKLFNMCH 161 (267)
Q Consensus 97 ~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-------~~-~-----~~~~~v~~~~~~~ 161 (267)
+|-=||+|. +.++..++.. +.+|+++|++++.++.+++++++. +. . ....++.+..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~--- 75 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT--- 75 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC---
Confidence 566778775 3444444443 358999999999998766544321 10 0 0001222221
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
+.... ...|+|+...+ .......++++++.+.++|+.++
T Consensus 76 -~~~~~----~~aDlVi~av~----------e~~~~k~~~~~~l~~~~~~~~il 114 (282)
T PRK05808 76 -DLDDL----KDADLVIEAAT----------ENMDLKKKIFAQLDEIAKPEAIL 114 (282)
T ss_pred -CHHHh----ccCCeeeeccc----------ccHHHHHHHHHHHHhhCCCCcEE
Confidence 11111 24677776621 12234468889999988988777
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.79 E-value=17 Score=30.44 Aligned_cols=85 Identities=9% Similarity=0.038 Sum_probs=51.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~-- 168 (267)
.+++||-.|++ |.++..+++.+-. .+.+|+.++.+++.++...+.+...+ ...++.++..|..+... ..
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~--~G~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAR--EGAAVALADLDAALAERAAAAIARDV---AGARVLAVPADVTDAASVAAAVAA 79 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcc---CCceEEEEEccCCCHHHHHHHHHH
Confidence 35688888875 4555555554422 15789999999888777776665421 12356666555443322 11
Q ss_pred --CCCCcEEEEEEeCCCC
Q 041272 169 --PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~l 184 (267)
.....+|.++.+.+..
T Consensus 80 ~~~~~g~id~li~~ag~~ 97 (260)
T PRK07063 80 AEEAFGPLDVLVNNAGIN 97 (260)
T ss_pred HHHHhCCCcEEEECCCcC
Confidence 1123689999988754
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.79 E-value=9 Score=31.63 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=50.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEE-eCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL-DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~gi-D~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
++++|=.| |+|.++..+++.+-. .+.+|+.+ +.+++..+...+.+...+ .++.++..|..+.... .
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~--~g~~v~~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAK--EGAKVVIAYDINEEAAQELLEEIKEEG-----GDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHH--CCCEEEEEcCCCHHHHHHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHH
Confidence 45777777 467777777765432 14688888 988877666555554422 4566666665543321 1
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
.....+|.++.+.+..+
T Consensus 77 ~~~~~~~id~vi~~ag~~~ 95 (247)
T PRK05565 77 IVEKFGKIDILVNNAGISN 95 (247)
T ss_pred HHHHhCCCCEEEECCCcCC
Confidence 11125899999887653
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.78 E-value=9.8 Score=37.38 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=63.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~-- 168 (267)
.+++||=.|++ |.++..+++.+.. .+.+|+.+|.+++.++.+.+.+... .++.++..|..+... ..
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~--~Ga~Vvl~~r~~~~~~~~~~~l~~~------~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAA--EGACVVLADLDEEAAEAAAAELGGP------DRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHH--CcCEEEEEeCCHHHHHHHHHHHhcc------CcEEEEEecCCCHHHHHHHHHH
Confidence 46788887764 4555555554432 1568999999998776665544321 245555544433221 11
Q ss_pred --CCCCcEEEEEEeCCCCCCCCCcee----------echhhHHHHHHHHHhcccC---CcEEEEEE
Q 041272 169 --PKSTAVRLVAFNLGYLPGGDKSVI----------TTSETTKMALEAAERILIP---GGLISMVV 219 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp~~d~~~~----------~~~~~~~~~l~~~~~~Lkp---gG~l~i~~ 219 (267)
.....+|+++.+.+........-. ........+++.+.+.+++ ||.++++.
T Consensus 492 ~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 492 AALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 112358999999876433211000 0111134456666776665 67776543
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.72 E-value=23 Score=30.04 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=48.8
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------C
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------V 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------~ 168 (267)
+.++|-.|+ +|.++..+++.+-. .+.+|++++.+++..+...+.....+ ...++.++..|..+.... .
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~ 76 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAK--KGYLVIATMRNPEKQENLLSQATQLN---LQQNIKVQQLDVTDQNSIHNFQLVL 76 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcC---CCCceeEEecCCCCHHHHHHHHHHH
Confidence 456787775 44556665554322 15789999998877666554443322 124567766665543321 1
Q ss_pred CCCCcEEEEEEeCCCC
Q 041272 169 PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~l 184 (267)
..-..+|.++.+.+..
T Consensus 77 ~~~~~id~vv~~ag~~ 92 (280)
T PRK06914 77 KEIGRIDLLVNNAGYA 92 (280)
T ss_pred HhcCCeeEEEECCccc
Confidence 1123689999887653
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=84.65 E-value=16 Score=32.83 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=48.3
Q ss_pred hcCCCCEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 91 VVRKGDTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..++|.+||=+|.++ |..++.+|+..+ ...+....|.+.++.+++. ..-..++.+..+..+..
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~-----~~~v~t~~s~e~~~l~k~l----------GAd~vvdy~~~~~~e~~ 218 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG-----AIKVVTACSKEKLELVKKL----------GADEVVDYKDENVVELI 218 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC-----CcEEEEEcccchHHHHHHc----------CCcEeecCCCHHHHHHH
Confidence 467888888888776 677788998863 3566667788888877763 22223333334443333
Q ss_pred CC--CCcEEEEEEeCC
Q 041272 169 PK--STAVRLVAFNLG 182 (267)
Q Consensus 169 ~~--~~~~d~ii~~~~ 182 (267)
.. ...||+|+-+.+
T Consensus 219 kk~~~~~~DvVlD~vg 234 (347)
T KOG1198|consen 219 KKYTGKGVDVVLDCVG 234 (347)
T ss_pred HhhcCCCccEEEECCC
Confidence 22 346888887743
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=84.64 E-value=4.3 Score=40.24 Aligned_cols=98 Identities=10% Similarity=-0.004 Sum_probs=62.9
Q ss_pred CEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-------------cccccceEEEecC
Q 041272 96 DTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS-------------KAEKGLVKLFNMC 160 (267)
Q Consensus 96 ~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~-------------~~~~~~v~~~~~~ 160 (267)
.+|-=||+|+ +.++..+|.. +..|+.+|.+++.++.+.+++.+.-. .....++++..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-- 407 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL-- 407 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC--
Confidence 4788999987 3444555544 57999999999999998887754210 00012233221
Q ss_pred hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 161 HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 161 ~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
++... .+.|+|+-. +....+.+.++++++-++++|+.+|.-
T Consensus 408 --~~~~~----~~aDlViEA----------v~E~l~~K~~vf~~l~~~~~~~~ilas 448 (737)
T TIGR02441 408 --DYSGF----KNADMVIEA----------VFEDLSLKHKVIKEVEAVVPPHCIIAS 448 (737)
T ss_pred --CHHHh----ccCCeehhh----------ccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 11111 246677665 334466778999999999999988853
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.51 E-value=7.8 Score=32.64 Aligned_cols=85 Identities=13% Similarity=0.047 Sum_probs=50.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.+.++|=.|++. .++..+++.+-. .+.+|+.++.+++.++.+.+.+.... ...++..+..|..+....
T Consensus 7 ~~k~~lItGas~-giG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~ 80 (265)
T PRK07062 7 EGRVAVVTGGSS-GIGLATVELLLE--AGASVAICGRDEERLASAEARLREKF---PGARLLAARCDVLDEADVAAFAAA 80 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHhhC---CCceEEEEEecCCCHHHHHHHHHH
Confidence 356888888655 455555554422 15789999999987777666654432 012455555444443221
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 81 ~~~~~g~id~li~~Ag~~ 98 (265)
T PRK07062 81 VEARFGGVDMLVNNAGQG 98 (265)
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 11123689999998763
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=84.43 E-value=13 Score=28.70 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=49.4
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC--hHHHHHHHHHHhhccccccccceEEEecChhhhhh-------c
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ--SEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-------I 167 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s--~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-------~ 167 (267)
+||=.|++ |.++..+++.+-. .++.+|+.+..+ .+..+...+.++..+ .++.++..|..+... .
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~-~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALAR-RGARVVILTSRSEDSEGAQELIQELKAPG-----AKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHH-TTTEEEEEEESSCHHHHHHHHHHHHHHTT-----SEEEEEESETTSHHHHHHHHHHH
T ss_pred EEEEECCC-CHHHHHHHHHHHh-cCceEEEEeeecccccccccccccccccc-----ccccccccccccccccccccccc
Confidence 46666766 4555555554422 023588899988 555665555555433 677777655443322 1
Q ss_pred CCCCCcEEEEEEeCCCCC
Q 041272 168 VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp 185 (267)
......+|.++.+.+...
T Consensus 75 ~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 75 IKRFGPLDILINNAGIFS 92 (167)
T ss_dssp HHHHSSESEEEEECSCTT
T ss_pred cccccccccccccccccc
Confidence 222347999999988866
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.43 E-value=23 Score=29.83 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=51.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+.++|-.|++.| ++..+++++-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+.... .
T Consensus 9 ~~k~~lItGa~~~-iG~~ia~~l~~--~G~~vv~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 9 KGKIALITGASYG-IGFAIAKAYAK--AGATIVFNDINQELVDKGLAAYRELG-----IEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHHH
Confidence 4568888887764 44444443321 15789999999888777766665433 3566666555443221 1
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
..-..+|.++.+.+...
T Consensus 81 ~~~~~~~id~li~~ag~~~ 99 (265)
T PRK07097 81 IEKEVGVIDILVNNAGIIK 99 (265)
T ss_pred HHHhCCCCCEEEECCCCCC
Confidence 11135899999987643
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=84.37 E-value=8.1 Score=33.55 Aligned_cols=97 Identities=16% Similarity=0.227 Sum_probs=53.5
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-------cc------cccccceEEEecC
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-------TS------KAEKGLVKLFNMC 160 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-------~~------~~~~~~v~~~~~~ 160 (267)
.+|-=||+|. | .++..++.. +.+|+.+|.+++.++.+++++.+. +. .....++.+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-- 76 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT-- 76 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC--
Confidence 4677778774 2 333333333 468999999999988777654321 10 00001122211
Q ss_pred hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 161 HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 161 ~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
+... . ...|+|+... ...+.....+++++...++|+.+++
T Consensus 77 --~~~~-~---~~aD~Vieav----------~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 77 --NLEE-L---RDADFIIEAI----------VESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred --CHHH-h---CCCCEEEEcC----------ccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 1111 1 1357777762 2234555678888888888887653
|
|
| >cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.33 E-value=7.7 Score=33.72 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=55.0
Q ss_pred hhcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC--hhhhh
Q 041272 90 HVVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC--HSRME 165 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 165 (267)
..++++.+||=+|+ |. |..+..+|+..| .+|++++.+ +.++ +.+ .. .++... ...+.
T Consensus 158 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G-----~~v~~~~~~----~~~~----~~g----~~--~~~~~~~~~~~l~ 218 (325)
T cd08264 158 AGLGPGETVVVFGASGNTGIFAVQLAKMMG-----AEVIAVSRK----DWLK----EFG----AD--EVVDYDEVEEKVK 218 (325)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHcC-----CeEEEEeHH----HHHH----HhC----CC--eeecchHHHHHHH
Confidence 34678899999997 44 788888888764 578888622 2222 222 01 111111 12222
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
... ..+|+++...+ ...+..+.+.|+++|.++...
T Consensus 219 ~~~---~~~d~vl~~~g----------------~~~~~~~~~~l~~~g~~v~~g 253 (325)
T cd08264 219 EIT---KMADVVINSLG----------------SSFWDLSLSVLGRGGRLVTFG 253 (325)
T ss_pred HHh---CCCCEEEECCC----------------HHHHHHHHHhhccCCEEEEEe
Confidence 222 24777775521 147788999999999998654
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.31 E-value=6.6 Score=32.54 Aligned_cols=48 Identities=10% Similarity=0.010 Sum_probs=33.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~ 144 (267)
++.+||-.|+ +|.++..+++.+.. .+.+|+.++.+++..+...+.+..
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~--~g~~V~~~~r~~~~~~~~~~~l~~ 52 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAA--AGATVILVARHQKKLEKVYDAIVE 52 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHH--cCCEEEEEeCChHHHHHHHHHHHH
Confidence 3568999995 56666666665533 257899999999877666555543
|
|
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=84.24 E-value=15 Score=31.84 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=59.0
Q ss_pred hcCCCCEEEEec-CC-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----hh
Q 041272 91 VVRKGDTVVDAT-CG-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----RM 164 (267)
Q Consensus 91 ~l~~~~~VLDlG-cG-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~l 164 (267)
.+.++.+||=.| +| .|..+..+|+..| .+|++++.+++..+.+++ .+ .. .++..... .+
T Consensus 137 ~~~~g~~vlI~g~~g~ig~~~~~lak~~G-----~~v~~~~~~~~~~~~~~~----~g----~~--~~~~~~~~~~~~~~ 201 (327)
T PRK10754 137 EIKPDEQFLFHAAAGGVGLIACQWAKALG-----AKLIGTVGSAQKAQRAKK----AG----AW--QVINYREENIVERV 201 (327)
T ss_pred CCCCCCEEEEEeCCcHHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHH----CC----CC--EEEcCCCCcHHHHH
Confidence 356788888775 33 3778888888874 689999998887776643 22 11 11211111 12
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.... ....+|+++...+ ...+.++.+.|+++|.++...
T Consensus 202 ~~~~-~~~~~d~vl~~~~----------------~~~~~~~~~~l~~~g~~v~~g 239 (327)
T PRK10754 202 KEIT-GGKKVRVVYDSVG----------------KDTWEASLDCLQRRGLMVSFG 239 (327)
T ss_pred HHHc-CCCCeEEEEECCc----------------HHHHHHHHHHhccCCEEEEEc
Confidence 2222 2235787775421 145667788899999997654
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.22 E-value=11 Score=32.51 Aligned_cols=100 Identities=17% Similarity=0.230 Sum_probs=58.3
Q ss_pred hcCCCCEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhc
Q 041272 91 VVRKGDTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEI 167 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~ 167 (267)
.+.++.+||-.|.+. |..+..++... +.+|+.++.+++..+.++. .+ ....+.....+. ..+...
T Consensus 163 ~~~~~~~vlI~g~~~~iG~~~~~~~~~~-----g~~v~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~ 230 (342)
T cd08266 163 RLRPGETVLVHGAGSGVGSAAIQIAKLF-----GATVIATAGSEDKLERAKE----LG---ADYVIDYRKEDFVREVREL 230 (342)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHH----cC---CCeEEecCChHHHHHHHHH
Confidence 356788999888764 56666677665 4689999998877666543 12 000111111000 112222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. ...+|.++.+.+. ..+.++.+.|+++|.++...
T Consensus 231 ~~-~~~~d~~i~~~g~----------------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 231 TG-KRGVDVVVEHVGA----------------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred hC-CCCCcEEEECCcH----------------HHHHHHHHHhhcCCEEEEEe
Confidence 22 2357888776421 35677788899999987654
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.17 E-value=15 Score=31.86 Aligned_cols=102 Identities=25% Similarity=0.157 Sum_probs=55.4
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeC--ChHHHHHHHHHHhhccccccccceEEEecCh-hhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDI--QSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEE 166 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~--s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~ 166 (267)
.++++.+||-.|+|. |..+..+|+..+ .+|+.+.. +++..+.+++ .+ ...+.....+. ..+..
T Consensus 161 ~~~~g~~vlI~g~g~~g~~~~~la~~~G-----~~v~~~~~~~~~~~~~~~~~----~g----~~~~~~~~~~~~~~l~~ 227 (306)
T cd08258 161 GIRPGDTVVVFGPGPIGLLAAQVAKLQG-----ATVVVVGTEKDEVRLDVAKE----LG----ADAVNGGEEDLAELVNE 227 (306)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-----CEEEEECCCCCHHHHHHHHH----hC----CcccCCCcCCHHHHHHH
Confidence 356788887777653 666677777764 56766643 3333333332 12 01110001111 11222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.. ....+|+++...+. ...+....+.|+++|.++.....
T Consensus 228 ~~-~~~~vd~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~ 266 (306)
T cd08258 228 IT-DGDGADVVIECSGA---------------VPALEQALELLRKGGRIVQVGIF 266 (306)
T ss_pred Hc-CCCCCCEEEECCCC---------------hHHHHHHHHHhhcCCEEEEEccc
Confidence 22 22357887766321 25778889999999999866554
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=84.16 E-value=5.6 Score=34.76 Aligned_cols=81 Identities=17% Similarity=0.109 Sum_probs=46.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh---hcCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME---EIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~---~~~~~ 170 (267)
.+++||-.| |+|.++..+++.+-. .+.+|++++.++.............+ ...+++++.+|..+.. ..+.
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~--~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~- 76 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLF--RGYTINATVRDPKDRKKTDHLLALDG---AKERLKLFKADLLDEGSFELAID- 76 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHH--CCCEEEEEEcCCcchhhHHHHHhccC---CCCceEEEeCCCCCchHHHHHHc-
Confidence 356888887 678888888876533 14688888777654433322221111 1245777766655432 2222
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
.+|.++.+.+.
T Consensus 77 --~~d~vih~A~~ 87 (325)
T PLN02989 77 --GCETVFHTASP 87 (325)
T ss_pred --CCCEEEEeCCC
Confidence 37888888764
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=84.13 E-value=10 Score=36.71 Aligned_cols=98 Identities=10% Similarity=0.009 Sum_probs=52.7
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC-CcE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS-TAV 174 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~-~~~ 174 (267)
++|+=+|+ |..+..+++.+.. .+.+++.+|.+++.++.+++. ....+.+|..+...+...+ .+.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A 465 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMA--NKMRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKA 465 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccC
Confidence 45665554 5666666654432 146899999999999988651 2345566655443322111 145
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|.++...+. .+....+. ...|.+.|...++....
T Consensus 466 ~~vv~~~~d-----------~~~n~~i~-~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 466 EAIVITCNE-----------PEDTMKIV-ELCQQHFPHLHILARAR 499 (601)
T ss_pred CEEEEEeCC-----------HHHHHHHH-HHHHHHCCCCeEEEEeC
Confidence 556555211 11122233 33455678877765443
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.12 E-value=16 Score=33.61 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=23.9
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHH
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST 138 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a 138 (267)
++|-=||.|. .+..+|..+-. -+.+|+++|++++.++..
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~--~G~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFAS--RQKQVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHh--CCCEEEEEeCCHHHHHHH
Confidence 4666777765 33333332211 046899999999988763
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=23 Score=29.61 Aligned_cols=80 Identities=14% Similarity=0.005 Sum_probs=43.8
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c----
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I---- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~---- 167 (267)
++++|=.|++ |.++..+++.+-. .+.+|+.+|.++.. +...+.+...+ .++.++..|..+... .
T Consensus 8 ~k~vlVtGas-~gIG~~la~~l~~--~G~~v~~~~r~~~~-~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~ 78 (260)
T PRK12823 8 GKVVVVTGAA-QGIGRGVALRAAA--EGARVVLVDRSELV-HEVAAELRAAG-----GEALALTADLETYAGAQAAMAAA 78 (260)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHH--CCCEEEEEeCchHH-HHHHHHHHhcC-----CeEEEEEEeCCCHHHHHHHHHHH
Confidence 5678888855 5556555554432 15789999998643 33333333322 344455444443211 1
Q ss_pred CCCCCcEEEEEEeCCC
Q 041272 168 VPKSTAVRLVAFNLGY 183 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~ 183 (267)
......+|.++.+.+.
T Consensus 79 ~~~~~~id~lv~nAg~ 94 (260)
T PRK12823 79 VEAFGRIDVLINNVGG 94 (260)
T ss_pred HHHcCCCeEEEECCcc
Confidence 1112368999998764
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.03 E-value=5.8 Score=33.49 Aligned_cols=117 Identities=11% Similarity=0.142 Sum_probs=63.0
Q ss_pred CCCEEEEecCC-CChHHHHHHHhcCCCCCCcEEEEEeCCh--HHHHHHHHHHhhccccccccceEEEecChhhhhh---c
Q 041272 94 KGDTVVDATCG-NGYDTLMMLKMVADESSAGCVYGLDIQS--EALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I 167 (267)
Q Consensus 94 ~~~~VLDlGcG-~G~~~~~la~~~~~~~p~~~v~giD~s~--~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~ 167 (267)
.+.++|-.|.| ++.++..+|+.+-. .+.+|+.++.+. +.++...+.+ + .++.++..|..+... .
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~--~G~~v~l~~r~~~~~~~~~~~~~~---~-----~~~~~~~~Dv~~~~~i~~~ 75 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQE--QGAEVVLTGFGRALRLTERIAKRL---P-----EPAPVLELDVTNEEHLASL 75 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHH--CCCEEEEecCccchhHHHHHHHhc---C-----CCCcEEeCCCCCHHHHHHH
Confidence 35689999985 56777777765432 157899888764 3333332222 1 234444444443322 1
Q ss_pred ----CCCCCcEEEEEEeCCCCCCCC--Cceee-chh-----------hHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 ----VPKSTAVRLVAFNLGYLPGGD--KSVIT-TSE-----------TTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ----~~~~~~~d~ii~~~~~lp~~d--~~~~~-~~~-----------~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
......+|+++.|.+..+... ..+.. ..+ .+-.+.+.+...++++|.++....
T Consensus 76 ~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~ 146 (256)
T PRK07889 76 ADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDF 146 (256)
T ss_pred HHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEee
Confidence 112246899999988754210 01111 111 122345566777788887765543
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=84.02 E-value=7.6 Score=33.49 Aligned_cols=40 Identities=10% Similarity=-0.025 Sum_probs=24.7
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
+|.=||+|. ++..++..+.. .+.+|+++|.+++.++.+++
T Consensus 2 ~I~IIG~G~--mG~sla~~L~~--~g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGL--IGGSLGLDLRS--LGHTVYGVSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecH--HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHH
Confidence 466677665 44333333211 03589999999988777654
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.02 E-value=14 Score=30.59 Aligned_cols=82 Identities=11% Similarity=0.037 Sum_probs=49.8
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cCCC-C
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IVPK-S 171 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~~~-~ 171 (267)
++||-.| |+|.++..+++++-. -+.+|+.++.+++..+...+.+...+ ..++.++..|..+..+ .... .
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~--~G~~Vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAA--AGARLYLAARDVERLERLADDLRARG----AVAVSTHELDILDTASHAAFLDSLP 74 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhc----CCeEEEEecCCCChHHHHHHHHHHh
Confidence 4678777 456777777765533 15689999999877665555444322 3467777666554432 1111 1
Q ss_pred CcEEEEEEeCCCC
Q 041272 172 TAVRLVAFNLGYL 184 (267)
Q Consensus 172 ~~~d~ii~~~~~l 184 (267)
..+|.++.+.+..
T Consensus 75 ~~~d~vv~~ag~~ 87 (243)
T PRK07102 75 ALPDIVLIAVGTL 87 (243)
T ss_pred hcCCEEEECCcCC
Confidence 2468898887654
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.00 E-value=10 Score=31.83 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=45.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~-- 168 (267)
.++++|-.|+++ .++..+++++-. .+.+|+.++.++. +...+.++..+ .++.++..|..+... ..
T Consensus 7 ~~k~~lItGas~-gIG~aia~~l~~--~G~~vv~~~~~~~--~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 7 NGKVAIITGCNT-GLGQGMAIGLAK--AGADIVGVGVAEA--PETQAQVEALG-----RKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHH--CCCEEEEecCchH--HHHHHHHHHcC-----CeEEEEEeCCCCHHHHHHHHHH
Confidence 467889888655 555555554322 1678998887642 22333333322 345555555443322 11
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.+.+...
T Consensus 77 ~~~~~g~iD~lv~~ag~~~ 95 (251)
T PRK12481 77 AVEVMGHIDILINNAGIIR 95 (251)
T ss_pred HHHHcCCCCEEEECCCcCC
Confidence 11236899999987643
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.90 E-value=13 Score=30.77 Aligned_cols=83 Identities=10% Similarity=0.016 Sum_probs=50.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+.+||=.| |+|.++..+++.+-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+.... .
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAE--AGATVAFNDGLAAEARELAAALEAAG-----GRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 356788666 467777777765532 14689999998887766655554322 3566666555443221 1
Q ss_pred --CCCCcEEEEEEeCCCC
Q 041272 169 --PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~l 184 (267)
.....+|.++.+.+..
T Consensus 78 ~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 78 AAAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 1113589999887663
|
|
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=83.87 E-value=11 Score=33.07 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=53.8
Q ss_pred hcCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC------h-
Q 041272 91 VVRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC------H- 161 (267)
Q Consensus 91 ~l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~------~- 161 (267)
.++++.+||=.|+ +.|..+..+|+..+ .+++.+..+.+..+..++.+++.+ ... ++... .
T Consensus 143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~g-----~~v~~~~~~~~~~~~~~~~~~~~g----~~~--~~~~~~~~~~~~~ 211 (341)
T cd08290 143 KLQPGDWVIQNGANSAVGQAVIQLAKLLG-----IKTINVVRDRPDLEELKERLKALG----ADH--VLTEEELRSLLAT 211 (341)
T ss_pred ccCCCCEEEEccchhHHHHHHHHHHHHcC-----CeEEEEEcCCCcchhHHHHHHhcC----CCE--EEeCcccccccHH
Confidence 4578889998876 33778888888864 566666545421122222222223 111 11111 1
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..+..... . .+|+++...+- ..+.++.+.|+++|.++...
T Consensus 212 ~~i~~~~~-~-~~d~vld~~g~----------------~~~~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 212 ELLKSAPG-G-RPKLALNCVGG----------------KSATELARLLSPGGTMVTYG 251 (341)
T ss_pred HHHHHHcC-C-CceEEEECcCc----------------HhHHHHHHHhCCCCEEEEEe
Confidence 11222222 2 57888765321 23456778899999987553
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.87 E-value=5.8 Score=33.03 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=49.1
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh-------hcC
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME-------EIV 168 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~-------~~~ 168 (267)
.+||=.| |+|.++..+++.+-. .+.+|++++.+++..+.....+...+ .++.++..|..+.. ...
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~--~g~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~ 73 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAA--AGANVVVNDLGEAGAEAAAKVATDAG-----GSVIYLVADVTKEDEIADMIAAAA 73 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CceEEEECCCCCHHHHHHHHHHHH
Confidence 3566666 567777777766432 14689999999877666555444322 45666665555433 211
Q ss_pred CCCCcEEEEEEeCCCC
Q 041272 169 PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~l 184 (267)
......|.++.+.+..
T Consensus 74 ~~~~~~d~vi~~a~~~ 89 (255)
T TIGR01963 74 AEFGGLDILVNNAGIQ 89 (255)
T ss_pred HhcCCCCEEEECCCCC
Confidence 1123578888887653
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 267 | ||||
| 3eey_A | 197 | Crystal Structure Of Putative Rrna-Methylase From C | 5e-23 | ||
| 3lby_A | 181 | Crystal Structure Of Smu.1697c, A Putative Methyltr | 1e-16 | ||
| 3mti_A | 185 | The Crystal Structure Of A Rrna Methylase From Stre | 2e-13 |
| >pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum Length = 197 | Back alignment and structure |
|
| >pdb|3LBY|A Chain A, Crystal Structure Of Smu.1697c, A Putative Methyltransferase From Streptococcus Mutans In Complex With Sah Length = 181 | Back alignment and structure |
|
| >pdb|3MTI|A Chain A, The Crystal Structure Of A Rrna Methylase From Streptococcus Thermophilus To 1.95a Length = 185 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 3e-57
Identities = 62/185 (33%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ V+ VVDAT GNG DT + + + VY D+Q +AL TS L
Sbjct: 12 SHDFLAEVLDDESIVVDATMGNGNDTAFLAGL------SKKVYAFDVQEQALGKTSQRL- 64
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
S +L H ++ V + +R FNLGYLP DKSVIT TT A+E
Sbjct: 65 ---SDLGIENTELILDGHENLDHYVREP--IRAAIFNLGYLPSADKSVITKPHTTLEAIE 119
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLV 262
L GG +++++Y GH GG E +AV + L + +Q LN+ P LV
Sbjct: 120 KILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLV 179
Query: 263 FLFKR 267
L K
Sbjct: 180 MLEKL 184
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 8e-57
Identities = 68/185 (36%), Positives = 99/185 (53%), Gaps = 9/185 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ K V++GDTVVDATCGNG DT + +V + G V+G DIQ +A+ +T+ L
Sbjct: 12 SHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGEN---GRVFGFDIQDKAIANTTKKLT 68
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
V L H M++ + V+ V FNLGYLP GD S+ T ETT AL
Sbjct: 69 D---LNLIDRVTLIKDGHQNMDKYIDCP--VKAVMFNLGYLPSGDHSISTRPETTIQALS 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLV 262
A +L+ GG+I++V+Y G G EE E V F + + +I + +N+ P+LV
Sbjct: 124 KAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPPILV 183
Query: 263 FLFKR 267
+ K
Sbjct: 184 CIEKI 188
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-09
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 87 VWKHV-VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALK 136
V K +++G TV+D G G+ + KMV ++ G VY +D+Q E +
Sbjct: 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEK---GKVYAIDVQEEMVN 76
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 7e-06
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALK 136
K +VD CGNG+ +L+ +Y +DI ALK
Sbjct: 15 EGKKGVIVDYGCGNGFYCKYLLEFATK------LYCIDINVIALK 53
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-05
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 15/136 (11%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ ++GD+V+D CG G D L + + G YG+DI ++ + +
Sbjct: 59 RLYTKRGDSVLDLGCGKGGDLLKYER-----AGIGEYYGVDIAEVSINDARV---RARNM 110
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
+ V + K V F+ Y +TSE+ +A R
Sbjct: 111 KRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAF-------STSESLDIAQRNIARH 163
Query: 209 LIPGGLISMVVYVGHP 224
L PGG M V
Sbjct: 164 LRPGGYFIMTVPSRDV 179
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-05
Identities = 33/185 (17%), Positives = 54/185 (29%), Gaps = 53/185 (28%)
Query: 84 ANGVWKHV------VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKS 137
+ + R V+D G G+ L V + G+D
Sbjct: 5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQE------CIGVDA------- 51
Query: 138 TSSLLDKTTSKA-EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKS--VITT 194
T +++ +S A EKG+ VR LP D S +IT
Sbjct: 52 TKEMVEVASSFAQEKGV------------------ENVRFQQGTAESLPFPDDSFDIITC 93
Query: 195 SETT------KMALEAAERILIPGG--LISMVVYVGHPGGREELEAVE-----AFARSLS 241
+ A+ R+L G L+ P E + + + R S
Sbjct: 94 RYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESS 153
Query: 242 VDDWI 246
+ +W
Sbjct: 154 LSEWQ 158
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 5e-05
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 43/166 (25%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
V G V++A CG G T+++ K D + +DI + L+K
Sbjct: 30 HHDTVYPPGAKVLEAGCGIGAQTVILAKNNPD----AEITSIDI-------SPESLEKAR 78
Query: 147 SKAEK-GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKS--VITTSETT----- 198
EK G+ V+ + N+ LP D S I
Sbjct: 79 ENTEKNGI------------------KNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQS 120
Query: 199 -KMALEAAERILIPGGLISMVVY-----VGHPGGREELEAVEAFAR 238
+ AL++ +++L PGG I+++ HP G++ +EA R
Sbjct: 121 PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIR 166
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 2e-04
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALK 136
+G TV+D CG G D + K+V + G V G+D+ L+
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEH---GKVIGVDMLDNQLE 122
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 8e-04
Identities = 26/170 (15%), Positives = 45/170 (26%), Gaps = 47/170 (27%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA-E 150
++ + V+D G G+ V V D+ T +L +
Sbjct: 35 LKGNEEVLDVATGGGHVANAFAPFVKK------VVAFDL-------TEDILKVARAFIEG 81
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKS--VITTS------ETTKMAL 202
G V V + +P D+ ++T +
Sbjct: 82 NGH------------------QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFV 123
Query: 203 EAAERILIPGG--LISMVVYVGHPGGREELEAVE-----AFARSLSVDDW 245
A R+L GG L+ + VE + R+ DW
Sbjct: 124 SEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDW 173
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 267 | |||
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.96 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.95 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.82 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.81 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.76 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.75 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.75 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.74 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.72 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.72 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.72 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.72 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.72 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.72 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.71 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.71 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.71 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.71 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.71 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.71 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.71 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.7 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.7 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.7 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.7 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.7 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.7 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.7 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.69 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.69 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.69 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.69 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.69 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.69 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.69 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.69 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.69 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.69 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.69 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.68 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.68 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.68 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.68 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.68 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.68 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.68 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.67 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.67 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.67 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.67 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.67 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.67 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.67 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.67 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.67 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.67 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.67 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.67 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.66 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.66 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.66 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.66 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.66 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.66 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.66 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.66 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.65 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.65 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.65 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.65 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.65 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.65 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.65 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.65 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.65 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.65 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.65 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.65 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.65 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.64 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.64 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.64 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.64 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.64 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.64 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.64 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.64 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.64 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.64 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.64 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.64 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.64 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.64 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.64 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.63 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.63 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.63 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.63 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.63 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.63 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.63 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.63 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.63 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.63 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.63 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.63 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.63 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.63 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.62 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.62 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.62 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.62 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.62 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.62 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.61 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.61 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.61 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.61 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.61 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.61 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.61 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.61 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.61 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.61 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.6 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.6 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.6 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.6 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.6 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.6 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.59 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.59 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.59 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.59 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.59 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.59 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.59 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.59 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.59 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.59 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.58 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.58 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.58 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.58 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.58 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.58 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.58 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.58 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.58 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.58 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.58 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.57 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.57 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.57 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.57 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.57 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.56 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.56 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.56 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.56 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.56 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.56 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.56 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.55 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.55 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.55 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.55 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.55 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.54 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.54 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.54 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.54 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.54 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.54 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.54 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.54 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.53 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.53 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.53 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.53 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.53 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.53 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.53 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.53 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.53 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.52 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.52 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.52 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.52 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.52 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.51 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.51 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.51 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.51 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.51 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.5 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.5 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.49 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.48 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.48 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.48 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.48 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.47 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.47 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.46 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.46 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.46 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.46 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.45 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.45 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.45 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.45 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.45 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.45 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.44 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.44 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.44 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.44 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.44 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.44 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.44 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.43 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.43 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.43 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.42 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.41 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.41 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.41 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.39 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.39 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.38 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.38 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.37 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.36 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.35 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.35 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.35 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.35 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.35 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.34 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.33 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.33 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.32 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.32 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.31 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.31 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.3 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.3 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.29 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.26 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.25 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.25 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.24 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.24 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.24 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.24 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.23 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.22 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.22 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.21 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 99.19 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.19 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.17 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.15 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.14 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.14 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.14 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.14 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.13 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.12 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.08 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.08 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.08 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.08 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.03 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.0 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.96 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.95 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.9 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.86 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.85 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.84 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.82 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.75 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.74 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.72 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.71 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.6 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.58 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.58 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.57 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.54 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.49 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.38 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.35 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.24 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 98.1 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.05 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.97 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.97 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.97 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.74 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 97.58 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.57 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 97.52 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.51 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 97.49 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 97.46 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 97.45 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 97.38 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 97.36 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 97.34 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 97.32 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 97.32 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 97.3 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 97.27 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 97.24 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 97.23 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 97.23 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 97.22 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.18 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 97.18 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 97.16 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.14 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.13 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 97.11 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 97.1 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 97.07 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 97.07 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.03 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 97.01 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 97.01 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.99 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.98 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.94 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.93 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.91 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.89 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.85 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.84 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.84 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.81 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.8 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 96.77 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.74 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.72 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.69 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.68 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.68 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.6 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.6 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.58 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.53 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.53 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.51 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.49 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.48 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 96.48 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.47 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.44 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.36 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.36 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.36 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 96.29 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.27 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.26 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.25 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.2 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.2 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.19 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.16 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.15 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.14 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 96.07 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 96.04 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 95.96 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.91 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 95.84 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.71 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.66 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 95.63 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 95.57 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 95.53 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.21 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 95.05 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 94.82 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 94.79 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.68 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 94.59 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 94.33 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 94.29 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 94.19 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 93.96 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.75 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.72 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 93.64 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 93.55 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 93.52 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 93.35 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 93.16 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 93.05 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 92.96 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 92.92 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 92.9 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 92.86 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 92.61 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 92.48 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 92.45 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 92.42 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 92.4 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 92.19 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 92.12 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 92.12 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 92.11 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 92.05 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 91.98 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 91.91 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 91.82 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.63 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 91.52 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 91.44 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 91.43 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 91.38 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 91.33 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 91.33 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 91.28 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 91.24 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 91.19 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 91.14 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 91.07 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 91.01 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 90.99 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 90.95 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 90.95 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 90.81 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 90.76 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 90.73 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 90.71 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 90.69 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 90.59 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 90.52 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 90.41 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 90.38 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 90.35 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 90.33 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 90.27 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 90.2 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 90.11 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 90.1 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 89.96 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 89.95 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 89.89 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 89.88 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.77 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 89.74 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 89.74 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 89.72 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 89.72 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 89.5 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.43 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 89.41 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 89.36 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 89.29 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 89.15 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 89.13 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 89.1 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 89.04 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 89.03 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 88.95 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 88.85 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 88.84 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 88.65 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 88.61 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 88.4 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 88.36 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 88.19 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 88.19 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 88.19 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 88.0 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 87.97 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 87.97 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 87.9 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 87.56 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 87.51 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 87.48 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 87.44 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 87.41 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 87.28 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 87.25 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 87.24 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 87.19 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 87.18 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 87.12 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 87.05 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 86.94 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 86.92 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 86.92 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 86.92 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 86.64 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 86.38 |
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=192.09 Aligned_cols=178 Identities=34% Similarity=0.461 Sum_probs=142.8
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
.++.+..+.++...++++.+|||+|||+|.++..+++. +.+|+|+|+|++|++.|+++++.++ ..+++++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~------~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~ 75 (185)
T 3mti_A 6 KRPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL------SKKVYAFDVQEQALGKTSQRLSDLG----IENTELI 75 (185)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHHT----CCCEEEE
T ss_pred HhHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEE
Confidence 45667788888888899999999999999999999987 3799999999999999999999877 4789999
Q ss_pred ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 158 ~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
+++..++.... +.+||+|++++++++..+..+.+.+.....+++++.++|||||+++++++.++..+.++...+..|+
T Consensus 76 ~~~~~~l~~~~--~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 153 (185)
T 3mti_A 76 LDGHENLDHYV--REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYV 153 (185)
T ss_dssp ESCGGGGGGTC--CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHH
T ss_pred eCcHHHHHhhc--cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 87776665544 3479999999999988777777777888899999999999999999999988888888888999999
Q ss_pred HhCCCCceEEEEEeeecC-CCCceEEEeecC
Q 041272 238 RSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267 (267)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~-~~~p~~~~~~k~ 267 (267)
+.++...|.+..+.++++ +++|.+++++|+
T Consensus 154 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 184 (185)
T 3mti_A 154 IGLDQRVFTAMLYQPLNQINTPPFLVMLEKL 184 (185)
T ss_dssp HHSCTTTEEEEEEEESSCSSCCCEEEEEEEC
T ss_pred HhCCCceEEEEEehhhccCCCCCeEEEEEec
Confidence 999999999999999998 588899998875
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-26 Score=183.91 Aligned_cols=182 Identities=37% Similarity=0.580 Sum_probs=158.1
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
.+.....+.+....++++.+|||+|||+|.++..+++.+++ .++|+|+|+++.+++.|+++++.++ ...+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~v~~~ 79 (197)
T 3eey_A 6 KNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGE---NGRVFGFDIQDKAIANTTKKLTDLN---LIDRVTLI 79 (197)
T ss_dssp CCHHHHHHHHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCT---TCEEEEECSCHHHHHHHHHHHHHTT---CGGGEEEE
T ss_pred hhHHHHHHHHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcC---CCCCeEEE
Confidence 45566777777778899999999999999999999998753 4799999999999999999999876 34789999
Q ss_pred ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 158 ~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
+++..++..... ..||+|+++++++|..+..+........++++++.++|||||++++.++.++..+..+...+..|+
T Consensus 80 ~~d~~~~~~~~~--~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
T 3eey_A 80 KDGHQNMDKYID--CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFL 157 (197)
T ss_dssp CSCGGGGGGTCC--SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHH
T ss_pred ECCHHHHhhhcc--CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHH
Confidence 988877665433 479999999999898877777777788889999999999999999999988887878888999999
Q ss_pred HhCCCCceEEEEEeeecC-CCCceEEEeecC
Q 041272 238 RSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267 (267)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~-~~~p~~~~~~k~ 267 (267)
+.+...+|.+..+.++++ ..+|++++++++
T Consensus 158 ~~l~~~~~~v~~~~~~~~~~~pp~~~~~~~~ 188 (197)
T 3eey_A 158 KGVDQKKFIVQRTDFINQANCPPILVCIEKI 188 (197)
T ss_dssp TTSCTTTEEEEEEEETTCCSCCCEEEEEEEC
T ss_pred HhCCCCcEEEEEEEeccCccCCCeEEEEEEc
Confidence 999999999999999999 578899998875
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=152.30 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=97.5
Q ss_pred HHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 82 IAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 82 ~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
+....++...+++|.+|||+|||+|..+..+++.++. ++.+|+|||+|+.|++.|+++++..+ ...++++++++.
T Consensus 58 ~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~--~~~~v~gvD~s~~ml~~A~~~~~~~~---~~~~v~~~~~D~ 132 (261)
T 4gek_A 58 SMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHH--DNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDI 132 (261)
T ss_dssp HHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCS--SSCEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCT
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCC--CCCEEEEEECCHHHHHHHHHHHHhhc---cCceEEEeeccc
Confidence 3444555667899999999999999999999998753 46799999999999999999998866 356899998776
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
.++ .. .++|+|+++. +++ ..++..+++++++++|||||++++.+....
T Consensus 133 ~~~---~~--~~~d~v~~~~---------~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 133 RDI---AI--ENASMVVLNF---------TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp TTC---CC--CSEEEEEEES---------CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred ccc---cc--cccccceeee---------eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 543 22 2589998873 222 234567899999999999999999876443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=150.78 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=112.1
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++||++|||+|||+|.++..+|+.+|+ .++|+|+|++++|++.+++++++ ..|+..+.++..+......
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~---~G~V~avD~s~~~~~~l~~~a~~------~~ni~~V~~d~~~p~~~~~ 143 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGP---RGRIYGVEFAPRVMRDLLTVVRD------RRNIFPILGDARFPEKYRH 143 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCT---TCEEEEEECCHHHHHHHHHHSTT------CTTEEEEESCTTCGGGGTT
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhhHh------hcCeeEEEEeccCcccccc
Confidence 45789999999999999999999999986 79999999999999999998876 3588888888777666555
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCCh-hhHHHHHHHHHhCCCCceEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGR-EELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 248 (267)
....+|+|+.++.+ +.+...+++++.+.|||||++++++........ .......+..+.+...+|++.
T Consensus 144 ~~~~vDvVf~d~~~-----------~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~ 212 (233)
T 4df3_A 144 LVEGVDGLYADVAQ-----------PEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIK 212 (233)
T ss_dssp TCCCEEEEEECCCC-----------TTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEE
T ss_pred ccceEEEEEEeccC-----------ChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEE
Confidence 55689999887422 355678999999999999999987653221000 001122233344455678776
Q ss_pred EEeeecC--CCCceEEEeec
Q 041272 249 KFQMLNR--PLAPVLVFLFK 266 (267)
Q Consensus 249 ~~~~~~~--~~~p~~~~~~k 266 (267)
....+.. .++-.++.+.+
T Consensus 213 e~i~L~pf~~~H~lv~~~~r 232 (233)
T 4df3_A 213 DVVHLDPFDRDHAMIYAVMR 232 (233)
T ss_dssp EEEECTTTSTTEEEEEECC-
T ss_pred EEEccCCCCCceEEEEEEEe
Confidence 6555443 24444444443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=137.52 Aligned_cols=147 Identities=16% Similarity=0.174 Sum_probs=104.7
Q ss_pred HhhhcCCCCEEEEecCC-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh
Q 041272 88 WKHVVRKGDTVVDATCG-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE 166 (267)
Q Consensus 88 ~~~~l~~~~~VLDlGcG-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 166 (267)
+...++++.+|||+||| +|.++..+++.. +.+|+|+|+|+.+++.|++++..++ . ++++++++...+..
T Consensus 49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~----~-~v~~~~~d~~~~~~ 118 (230)
T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKFF-----NCKVTATEVDEEFFEYARRNIERNN----S-NVRLVKSNGGIIKG 118 (230)
T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHTT----C-CCEEEECSSCSSTT
T ss_pred hHhhcCCCCEEEEcCCCHHHHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHHhC----C-CcEEEeCCchhhhh
Confidence 44457789999999999 999999999885 2799999999999999999999877 3 88999877543433
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCcee----------echhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHH
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVI----------TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAF 236 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~----------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 236 (267)
.. +..||+|++|++|.+..+.... +.......+++++.++|||||++++..... ......+.++
T Consensus 119 ~~--~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~ 192 (230)
T 3evz_A 119 VV--EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK----EKLLNVIKER 192 (230)
T ss_dssp TC--CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC----HHHHHHHHHH
T ss_pred cc--cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc----HhHHHHHHHH
Confidence 32 3589999999988665542221 112334789999999999999999876521 2233344444
Q ss_pred HHhCCCCceEEEEEeee
Q 041272 237 ARSLSVDDWICCKFQML 253 (267)
Q Consensus 237 ~~~l~~~~~~~~~~~~~ 253 (267)
++ ..+|.+....+.
T Consensus 193 l~---~~g~~~~~~~~~ 206 (230)
T 3evz_A 193 GI---KLGYSVKDIKFK 206 (230)
T ss_dssp HH---HTTCEEEEEEEC
T ss_pred HH---HcCCceEEEEec
Confidence 44 446776666554
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=136.34 Aligned_cols=145 Identities=17% Similarity=0.209 Sum_probs=106.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++..++ ..+|+|+|+|+.+++.|++++...+ ..+++++.++..++ ..+
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~---~~~ 103 (219)
T 3dh0_A 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGE---KGKVYAIDVQEEMVNYAWEKVNKLG----LKNVEVLKSEENKI---PLP 103 (219)
T ss_dssp TCCTTCEEEESSCTTCTTHHHHHHHHTT---TCEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEECBTTBC---SSC
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEecccccC---CCC
Confidence 4678899999999999999999998643 5799999999999999999998876 45799988766443 234
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCC----hhhHHHHHHHHHhCCCCceE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGG----REELEAVEAFARSLSVDDWI 246 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~ 246 (267)
+..||+|+++ .++++.++...+++++.++|||||++++.++...... .........+.+.+...+|+
T Consensus 104 ~~~fD~v~~~---------~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 174 (219)
T 3dh0_A 104 DNTVDFIFMA---------FTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIR 174 (219)
T ss_dssp SSCEEEEEEE---------SCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCE
T ss_pred CCCeeEEEee---------hhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCE
Confidence 5589999998 3445556678999999999999999999887533211 11111122333334446788
Q ss_pred EEEEeeec
Q 041272 247 CCKFQMLN 254 (267)
Q Consensus 247 ~~~~~~~~ 254 (267)
++......
T Consensus 175 ~~~~~~~~ 182 (219)
T 3dh0_A 175 VGRVVEVG 182 (219)
T ss_dssp EEEEEEET
T ss_pred EEEEEeeC
Confidence 77765543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-17 Score=134.76 Aligned_cols=142 Identities=14% Similarity=0.170 Sum_probs=94.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|..+..+++..+ +++|+|+|+|+.|++.+.+.++.. .++.++.++..+.....+.
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~----~~~V~gvD~s~~~l~~~~~~a~~~------~~v~~~~~d~~~~~~~~~~ 123 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVD----EGIIYAVEYSAKPFEKLLELVRER------NNIIPLLFDASKPWKYSGI 123 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTT----TSEEEEECCCHHHHHHHHHHHHHC------SSEEEECSCTTCGGGTTTT
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcC----CCEEEEEECCHHHHHHHHHHHhcC------CCeEEEEcCCCCchhhccc
Confidence 457889999999999999999999864 379999999999988877766542 4677777666544221222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCCh-hhHHHHHHHHHhCCCCceEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGR-EELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
..+||+|+++.. .+.....+++++.++|||||+++++......... ...+....-.+.+... |.+..
T Consensus 124 ~~~fD~V~~~~~-----------~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~ 191 (210)
T 1nt2_A 124 VEKVDLIYQDIA-----------QKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVK 191 (210)
T ss_dssp CCCEEEEEECCC-----------STTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEE
T ss_pred ccceeEEEEecc-----------ChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEee
Confidence 257999999831 1233345699999999999999998543211111 1111111222334455 88777
Q ss_pred Eeeec
Q 041272 250 FQMLN 254 (267)
Q Consensus 250 ~~~~~ 254 (267)
.....
T Consensus 192 ~~~~~ 196 (210)
T 1nt2_A 192 HGSLM 196 (210)
T ss_dssp EEECT
T ss_pred eecCC
Confidence 66553
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-17 Score=139.30 Aligned_cols=147 Identities=16% Similarity=0.241 Sum_probs=103.7
Q ss_pred hcC-CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 91 VVR-KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 91 ~l~-~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
.++ ++.+|||+|||+|.++..++++. ..+|+|+|+++.+++.|++++..++ ...+++++++|..++.....
T Consensus 45 ~~~~~~~~vLDlG~G~G~~~~~la~~~-----~~~v~gvDi~~~~~~~a~~n~~~~~---~~~~v~~~~~D~~~~~~~~~ 116 (259)
T 3lpm_A 45 YLPIRKGKIIDLCSGNGIIPLLLSTRT-----KAKIVGVEIQERLADMAKRSVAYNQ---LEDQIEIIEYDLKKITDLIP 116 (259)
T ss_dssp CCCSSCCEEEETTCTTTHHHHHHHTTC-----CCEEEEECCSHHHHHHHHHHHHHTT---CTTTEEEECSCGGGGGGTSC
T ss_pred cCCCCCCEEEEcCCchhHHHHHHHHhc-----CCcEEEEECCHHHHHHHHHHHHHCC---CcccEEEEECcHHHhhhhhc
Confidence 355 78899999999999999999874 2499999999999999999999887 45679999988877654332
Q ss_pred CCCcEEEEEEeCCCCCCCCCcee-----------echhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHH
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVI-----------TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFAR 238 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~-----------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 238 (267)
...||+|++|++|......... ........+++.+.++|||||+++++... .....+...+.
T Consensus 117 -~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------~~~~~~~~~l~ 189 (259)
T 3lpm_A 117 -KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP------ERLLDIIDIMR 189 (259)
T ss_dssp -TTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT------TTHHHHHHHHH
T ss_pred -cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH------HHHHHHHHHHH
Confidence 3589999999888554111111 11234578999999999999999986531 12233333333
Q ss_pred hCCCCceEEEEEeeecC
Q 041272 239 SLSVDDWICCKFQMLNR 255 (267)
Q Consensus 239 ~l~~~~~~~~~~~~~~~ 255 (267)
..+|...+..++..
T Consensus 190 ---~~~~~~~~~~~v~~ 203 (259)
T 3lpm_A 190 ---KYRLEPKRIQFVHP 203 (259)
T ss_dssp ---HTTEEEEEEEEEES
T ss_pred ---HCCCceEEEEEeec
Confidence 34577776666544
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=136.93 Aligned_cols=119 Identities=11% Similarity=0.099 Sum_probs=91.9
Q ss_pred HHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh
Q 041272 86 GVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME 165 (267)
Q Consensus 86 ~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~ 165 (267)
.+......+|.+|||||||+|..+..+++.. ..+|+|||+|+.+++.|+++....+ .++.++.++..++.
T Consensus 52 ~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~-----~~~v~~id~~~~~~~~a~~~~~~~~-----~~~~~~~~~a~~~~ 121 (236)
T 3orh_A 52 ALAAAASSKGGRVLEVGFGMAIAASKVQEAP-----IDEHWIIECNDGVFQRLRDWAPRQT-----HKVIPLKGLWEDVA 121 (236)
T ss_dssp HHHHHHTTTCEEEEEECCTTSHHHHHHTTSC-----EEEEEEEECCHHHHHHHHHHGGGCS-----SEEEEEESCHHHHG
T ss_pred HHHHhhccCCCeEEEECCCccHHHHHHHHhC-----CcEEEEEeCCHHHHHHHHHHHhhCC-----CceEEEeehHHhhc
Confidence 3333345688999999999999999998763 2689999999999999999988755 67888888877665
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..++ +.+||.|+++... ......+..+...+++++.|+|||||+|.+..
T Consensus 122 ~~~~-~~~FD~i~~D~~~----~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 122 PTLP-DGHFDGILYDTYP----LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GGSC-TTCEEEEEECCCC----CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccc-ccCCceEEEeeee----cccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 4443 4589999988321 11223356778899999999999999997643
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-17 Score=137.10 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=90.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.|+++++..+ ...+++++.++..++. .
T Consensus 33 ~~~~~~~VLDiGcG~G~~~~~la~~~~-----~~v~gvD~s~~~l~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~- 100 (256)
T 1nkv_A 33 RMKPGTRILDLGSGSGEMLCTWARDHG-----ITGTGIDMSSLFTAQAKRRAEELG---VSERVHFIHNDAAGYV---A- 100 (256)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHTC-----CEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCCTTCC---C-
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhcC-----CeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEECChHhCC---c-
Confidence 467889999999999999999998863 689999999999999999998876 3458999987765542 2
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..||+|++. .+.++.++..++++++.++|||||++++.+.
T Consensus 101 ~~~fD~V~~~---------~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 101 NEKCDVAACV---------GATWIAGGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp SSCEEEEEEE---------SCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCCCCEEEEC---------CChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence 4589999986 2444445568999999999999999999765
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=131.84 Aligned_cols=145 Identities=11% Similarity=0.110 Sum_probs=103.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++.+++ +++|+|+|+|+.+++.+.++++.+ .+++++.++..+.......
T Consensus 74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~---~~~v~gvD~s~~~i~~~~~~a~~~------~~v~~~~~d~~~~~~~~~~ 144 (233)
T 2ipx_A 74 HIKPGAKVLYLGAASGTTVSHVSDIVGP---DGLVYAVEFSHRSGRDLINLAKKR------TNIIPVIEDARHPHKYRML 144 (233)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEECCCHHHHHHHHHHHHHC------TTEEEECSCTTCGGGGGGG
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHhhcc------CCeEEEEcccCChhhhccc
Confidence 4678899999999999999999998743 479999999999999888888763 5788988877654322222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC-CCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH-PGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
+..||+|+++++ .+.....+++++.++|||||++++.+.... ..............+.+...+|.+..
T Consensus 145 ~~~~D~V~~~~~-----------~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 213 (233)
T 2ipx_A 145 IAMVDVIFADVA-----------QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQE 213 (233)
T ss_dssp CCCEEEEEECCC-----------CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEE
T ss_pred CCcEEEEEEcCC-----------CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEE
Confidence 347999999853 123335678899999999999999766421 11111111122225777778899888
Q ss_pred EeeecC
Q 041272 250 FQMLNR 255 (267)
Q Consensus 250 ~~~~~~ 255 (267)
...+..
T Consensus 214 ~~~~~~ 219 (233)
T 2ipx_A 214 QLTLEP 219 (233)
T ss_dssp EEECTT
T ss_pred EEecCC
Confidence 665544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-17 Score=133.93 Aligned_cols=147 Identities=11% Similarity=0.067 Sum_probs=97.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc--------cccccceEEEecChh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS--------KAEKGLVKLFNMCHS 162 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~--------~~~~~~v~~~~~~~~ 162 (267)
.+.++.+|||+|||+|..+..|++. +.+|+|||+|+.|++.|+++...... .....+++++++|..
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~------g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 92 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF 92 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHC------CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence 4568899999999999999999987 46999999999999999988653100 001257889887765
Q ss_pred hhhhcCCCC-CcEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEEecCCC---CChhhHHHHHHHH
Q 041272 163 RMEEIVPKS-TAVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVVYVGHP---GGREELEAVEAFA 237 (267)
Q Consensus 163 ~l~~~~~~~-~~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~~~~~~~~~~~~ 237 (267)
++.. .+ .+||+|++... +.+ ..+...++++++.++|||||++++.+..... .+.......+++.
T Consensus 93 ~l~~---~~~~~fD~v~~~~~--------l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~ 161 (203)
T 1pjz_A 93 ALTA---RDIGHCAAFYDRAA--------MIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLH 161 (203)
T ss_dssp SSTH---HHHHSEEEEEEESC--------GGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHH
T ss_pred cCCc---ccCCCEEEEEECcc--------hhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHH
Confidence 5432 11 47999998631 112 2345678999999999999985554432111 0100001123445
Q ss_pred HhCCCCceEEEEEeeecC
Q 041272 238 RSLSVDDWICCKFQMLNR 255 (267)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~ 255 (267)
+.+.. +|++........
T Consensus 162 ~~~~~-gf~i~~~~~~~~ 178 (203)
T 1pjz_A 162 RVMSG-NWEVTKVGGQDT 178 (203)
T ss_dssp HTSCS-SEEEEEEEESSC
T ss_pred HHhcC-CcEEEEeccccc
Confidence 55665 888877665544
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-16 Score=125.91 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=95.9
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||+|||+|.++..+++..+ ..+|+|+|+|+++++.|+++++.++ ..+++++.++..+. ..
T Consensus 36 l~~~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~---~~ 104 (204)
T 3e05_A 36 LRLQDDLVMWDIGAGSASVSIEASNLMP----NGRIFALERNPQYLGFIRDNLKKFV----ARNVTLVEAFAPEG---LD 104 (204)
T ss_dssp TTCCTTCEEEEETCTTCHHHHHHHHHCT----TSEEEEEECCHHHHHHHHHHHHHHT----CTTEEEEECCTTTT---CT
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeCChhhh---hh
Confidence 3567889999999999999999999853 4899999999999999999998877 47899988766432 22
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
....||+|+++... ....++++++.++|||||++++... .......+.++++...
T Consensus 105 ~~~~~D~i~~~~~~------------~~~~~~l~~~~~~LkpgG~l~~~~~-----~~~~~~~~~~~l~~~g 159 (204)
T 3e05_A 105 DLPDPDRVFIGGSG------------GMLEEIIDAVDRRLKSEGVIVLNAV-----TLDTLTKAVEFLEDHG 159 (204)
T ss_dssp TSCCCSEEEESCCT------------TCHHHHHHHHHHHCCTTCEEEEEEC-----BHHHHHHHHHHHHHTT
T ss_pred cCCCCCEEEECCCC------------cCHHHHHHHHHHhcCCCeEEEEEec-----ccccHHHHHHHHHHCC
Confidence 22468999988422 1456899999999999999998776 2234455555665544
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-16 Score=135.60 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=90.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.+++.+|+..+ +++|+|+|+++.+++.|++|++.++ ..++.+++++..++ ..
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~----~~~V~~vD~s~~av~~a~~n~~~n~----l~~~~~~~~d~~~~-~~--- 183 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSK----PKLVYAIEKNPTAYHYLCENIKLNK----LNNVIPILADNRDV-EL--- 183 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTC----CSEEEEEECCHHHHHHHHHHHHHTT----CSSEEEEESCGGGC-CC---
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEECChHHc-Cc---
Confidence 467889999999999999999999853 3699999999999999999999987 56788998887665 22
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
...||+|+++++. ...++++++.+.|||||+++++++...
T Consensus 184 ~~~~D~Vi~d~p~-------------~~~~~l~~~~~~LkpgG~l~~s~~~~~ 223 (272)
T 3a27_A 184 KDVADRVIMGYVH-------------KTHKFLDKTFEFLKDRGVIHYHETVAE 223 (272)
T ss_dssp TTCEEEEEECCCS-------------SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred cCCceEEEECCcc-------------cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence 4479999999643 224688999999999999999988653
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-16 Score=131.90 Aligned_cols=134 Identities=12% Similarity=0.064 Sum_probs=97.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+++.+|||+|||+|..+..++... |+.+|+|+|+|+.|++.|+++++.++ ..++++++++..++......+.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~ 140 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICF----PHLHVTIVDSLNKRITFLEKLSEALQ----LENTTFCHDRAETFGQRKDVRE 140 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHC----TTCEEEEEESCHHHHHHHHHHHHHHT----CSSEEEEESCHHHHTTCTTTTT
T ss_pred CCCCEEEEecCCCCHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEeccHHHhcccccccC
Confidence 567899999999999999999864 25899999999999999999999877 4579999988766542111134
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEee
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQM 252 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (267)
.||+|++.. ..+...+++++.++|||||++++.... . ..++...+.+. +...+|.+.+...
T Consensus 141 ~fD~V~~~~-------------~~~~~~~l~~~~~~LkpgG~l~~~~g~--~-~~~~~~~~~~~---l~~~g~~~~~~~~ 201 (240)
T 1xdz_A 141 SYDIVTARA-------------VARLSVLSELCLPLVKKNGLFVALKAA--S-AEEELNAGKKA---ITTLGGELENIHS 201 (240)
T ss_dssp CEEEEEEEC-------------CSCHHHHHHHHGGGEEEEEEEEEEECC----CHHHHHHHHHH---HHHTTEEEEEEEE
T ss_pred CccEEEEec-------------cCCHHHHHHHHHHhcCCCCEEEEEeCC--C-chHHHHHHHHH---HHHcCCeEeEEEE
Confidence 799999873 133578999999999999999876431 1 22233333333 3344676665543
Q ss_pred e
Q 041272 253 L 253 (267)
Q Consensus 253 ~ 253 (267)
+
T Consensus 202 ~ 202 (240)
T 1xdz_A 202 F 202 (240)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=132.25 Aligned_cols=143 Identities=12% Similarity=0.140 Sum_probs=95.7
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+++|++|||+|||+|..+..+|+.+++ .++|+|+|+++.|++...+.+++ ..|+.++.+|.........
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~---~G~V~avD~s~~~l~~l~~~a~~------r~nv~~i~~Da~~~~~~~~ 142 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIEL---NGKAYGVEFSPRVVRELLLVAQR------RPNIFPLLADARFPQSYKS 142 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTT---TSEEEEEECCHHHHHHHHHHHHH------CTTEEEEECCTTCGGGTTT
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCC---CCEEEEEECcHHHHHHHHHHhhh------cCCeEEEEcccccchhhhc
Confidence 34779999999999999999999998865 68999999999998666555544 2578888887765433222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC---C-ChhhHHHHHHHHHhCCCCce
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP---G-GREELEAVEAFARSLSVDDW 245 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~-~~~~~~~~~~~~~~l~~~~~ 245 (267)
....||+|++++.. +.....+...+.+.|||||++++++...+. . ..+.......+++. .+|
T Consensus 143 ~~~~~D~I~~d~a~-----------~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~---~gf 208 (232)
T 3id6_C 143 VVENVDVLYVDIAQ-----------PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLEN---SNF 208 (232)
T ss_dssp TCCCEEEEEECCCC-----------TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHH---TTE
T ss_pred cccceEEEEecCCC-----------hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHH---CCC
Confidence 23479999999532 222233455666699999999998654331 1 11112233344443 358
Q ss_pred EEEEEeeecC
Q 041272 246 ICCKFQMLNR 255 (267)
Q Consensus 246 ~~~~~~~~~~ 255 (267)
++.....+..
T Consensus 209 ~~~~~~~l~p 218 (232)
T 3id6_C 209 ETIQIINLDP 218 (232)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEeccCC
Confidence 8877666644
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.71 E-value=8e-17 Score=136.79 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=87.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
....+.+|||||||+|..+..|++. +.+|+|+|+|+.|++.|++ ..++.+++++.+++ ..+
T Consensus 36 ~~~~~~~vLDvGcGtG~~~~~l~~~------~~~v~gvD~s~~ml~~a~~----------~~~v~~~~~~~e~~---~~~ 96 (257)
T 4hg2_A 36 VAPARGDALDCGCGSGQASLGLAEF------FERVHAVDPGEAQIRQALR----------HPRVTYAVAPAEDT---GLP 96 (257)
T ss_dssp HSSCSSEEEEESCTTTTTHHHHHTT------CSEEEEEESCHHHHHTCCC----------CTTEEEEECCTTCC---CCC
T ss_pred hcCCCCCEEEEcCCCCHHHHHHHHh------CCEEEEEeCcHHhhhhhhh----------cCCceeehhhhhhh---ccc
Confidence 3456789999999999999999987 4689999999999988764 35788888766443 345
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
+.+||+|++.. .+|+. +..++++++.|+|||||+|++..+........-...+..+.
T Consensus 97 ~~sfD~v~~~~---------~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 153 (257)
T 4hg2_A 97 PASVDVAIAAQ---------AMHWF-DLDRFWAELRRVARPGAVFAAVTYGLTRVDPEVDAVVDRLY 153 (257)
T ss_dssp SSCEEEEEECS---------CCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCCBCCHHHHHHHHHHH
T ss_pred CCcccEEEEee---------ehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCCCCCHHHHHHHHHHH
Confidence 67899999973 33333 35689999999999999999988754333333233334443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=134.33 Aligned_cols=122 Identities=14% Similarity=0.128 Sum_probs=90.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh---ccccccccceEEEecChhhhhh-c
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK---TTSKAEKGLVKLFNMCHSRMEE-I 167 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~---~~~~~~~~~v~~~~~~~~~l~~-~ 167 (267)
+.++.+|||+|||+|.+++.++++.+ +.+|+|+|+++.+++.|++++.. ++ ...+++++++|..++.. .
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~----~~~v~gvDi~~~~~~~a~~n~~~~~~~~---l~~~v~~~~~D~~~~~~~~ 106 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLE----KAEVTLYERSQEMAEFARRSLELPDNAA---FSARIEVLEADVTLRAKAR 106 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCT----TEEEEEEESSHHHHHHHHHHTTSGGGTT---TGGGEEEEECCTTCCHHHH
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHhhhhCC---CcceEEEEeCCHHHHhhhh
Confidence 45678999999999999999999853 48999999999999999999987 66 34579999888766522 1
Q ss_pred ---CCCCCcEEEEEEeCCCCCCCCCc-------e-e-echhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 ---VPKSTAVRLVAFNLGYLPGGDKS-------V-I-TTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ---~~~~~~~d~ii~~~~~lp~~d~~-------~-~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..++..||+|++|++|.+..... . . ........+++.+.++|||||+++++..
T Consensus 107 ~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 107 VEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp HHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 12235799999999886652100 0 0 1122357899999999999999988654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-15 Score=125.55 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=92.6
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++++.++ ...+++++.++..+... .
T Consensus 52 ~~~~~~~vLDlGcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~~~---~ 119 (204)
T 3njr_A 52 APRRGELLWDIGGGSGSVSVEWCLA------GGRAITIEPRADRIENIQKNIDTYG---LSPRMRAVQGTAPAALA---D 119 (204)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCTTGGGT---T
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCEEEEeCchhhhcc---c
Confidence 4678899999999999999999988 3799999999999999999999877 23389999877755322 2
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
...||+|+++... ... +++++.++|||||++++... ..+....+.++++...
T Consensus 120 ~~~~D~v~~~~~~-------------~~~-~l~~~~~~LkpgG~lv~~~~-----~~~~~~~~~~~l~~~g 171 (204)
T 3njr_A 120 LPLPEAVFIGGGG-------------SQA-LYDRLWEWLAPGTRIVANAV-----TLESETLLTQLHARHG 171 (204)
T ss_dssp SCCCSEEEECSCC-------------CHH-HHHHHHHHSCTTCEEEEEEC-----SHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEECCcc-------------cHH-HHHHHHHhcCCCcEEEEEec-----CcccHHHHHHHHHhCC
Confidence 2368999987311 234 99999999999999998876 2344455555555543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-16 Score=132.21 Aligned_cols=136 Identities=13% Similarity=-0.017 Sum_probs=99.9
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|..++.+|...+ +.+|+|+|+|+.+++.|+++++.++ ..++++++++..++........
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~----l~~v~~~~~d~~~~~~~~~~~~ 150 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRP----ELELVLVDATRKKVAFVERAIEVLG----LKGARALWGRAEVLAREAGHRE 150 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCT----TCEEEEEESCHHHHHHHHHHHHHHT----CSSEEEEECCHHHHTTSTTTTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHhC----CCceEEEECcHHHhhcccccCC
Confidence 4678999999999999999998853 5899999999999999999999887 4679999988776643211235
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEee
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQM 252 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (267)
+||+|++.. + .....+++.+.++|||||++++.... ...++.......++.+ ++.+.+...
T Consensus 151 ~fD~I~s~a---------~----~~~~~ll~~~~~~LkpgG~l~~~~g~---~~~~e~~~~~~~l~~~---G~~~~~~~~ 211 (249)
T 3g89_A 151 AYARAVARA---------V----APLCVLSELLLPFLEVGGAAVAMKGP---RVEEELAPLPPALERL---GGRLGEVLA 211 (249)
T ss_dssp CEEEEEEES---------S----CCHHHHHHHHGGGEEEEEEEEEEECS---CCHHHHTTHHHHHHHH---TEEEEEEEE
T ss_pred CceEEEECC---------c----CCHHHHHHHHHHHcCCCeEEEEEeCC---CcHHHHHHHHHHHHHc---CCeEEEEEE
Confidence 799999973 1 22368999999999999999875532 1233444444444443 465555444
Q ss_pred ecC
Q 041272 253 LNR 255 (267)
Q Consensus 253 ~~~ 255 (267)
+..
T Consensus 212 ~~~ 214 (249)
T 3g89_A 212 LQL 214 (249)
T ss_dssp EEC
T ss_pred eeC
Confidence 433
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.7e-17 Score=131.74 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=89.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++ +|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+ ...++++++.+..++. .++
T Consensus 42 ~~~~-~vLdiG~G~G~~~~~l~~~~-----~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~---~~~ 109 (219)
T 3dlc_A 42 ITAG-TCIDIGSGPGALSIALAKQS-----DFSIRALDFSKHMNEIALKNIADAN---LNDRIQIVQGDVHNIP---IED 109 (219)
T ss_dssp CCEE-EEEEETCTTSHHHHHHHHHS-----EEEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECBTTBCS---SCT
T ss_pred CCCC-EEEEECCCCCHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHHHHhcc---ccCceEEEEcCHHHCC---CCc
Confidence 3444 99999999999999999872 4799999999999999999998876 3468999987665432 344
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..||+|+++. ++++.++...+++++.++|||||++++.+..
T Consensus 110 ~~~D~v~~~~---------~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 110 NYADLIVSRG---------SVFFWEDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp TCEEEEEEES---------CGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccEEEECc---------hHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 5899999983 4455567789999999999999999998653
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-16 Score=138.67 Aligned_cols=162 Identities=15% Similarity=0.069 Sum_probs=111.7
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
..++...+++|.+|||+|||+|.+++.+|+. +++|+|+|+|+.+++.|++|++.++ .. ..+.++|..++
T Consensus 205 r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~------ga~V~avDis~~al~~a~~n~~~ng---~~--~~~~~~D~~~~ 273 (393)
T 4dmg_A 205 RRLFEAMVRPGERVLDVYSYVGGFALRAARK------GAYALAVDKDLEALGVLDQAALRLG---LR--VDIRHGEALPT 273 (393)
T ss_dssp HHHHHTTCCTTCEEEEESCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHT---CC--CEEEESCHHHH
T ss_pred HHHHHHHhcCCCeEEEcccchhHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHHHhC---CC--CcEEEccHHHH
Confidence 4444445667999999999999999999986 3569999999999999999999987 22 24557666655
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCc
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDD 244 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~ 244 (267)
..... + .||+|++|++++......+........++++.+.++|||||++++.++..+.........+...+.... ..
T Consensus 274 l~~~~-~-~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g-~~ 350 (393)
T 4dmg_A 274 LRGLE-G-PFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLG-RR 350 (393)
T ss_dssp HHTCC-C-CEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHT-CC
T ss_pred HHHhc-C-CCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhC-Ce
Confidence 44332 2 399999998876655444444556678899999999999999997777555433332344444444433 23
Q ss_pred eEEEEEeeecCCCCceE
Q 041272 245 WICCKFQMLNRPLAPVL 261 (267)
Q Consensus 245 ~~~~~~~~~~~~~~p~~ 261 (267)
++++.... ..+++|..
T Consensus 351 ~~i~~~~~-~~~DhP~~ 366 (393)
T 4dmg_A 351 LRVHRVTY-QPEDHPWS 366 (393)
T ss_dssp EEEEEEEE-CCTTSCEE
T ss_pred EEEEEEcC-CCCCCCcC
Confidence 44444322 12355543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=127.14 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=103.7
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..+++.+++ +++|+|+|+|+.+++.++++++.+ .+++++.++..+........
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~ 141 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGW---EGKIFGIEFSPRVLRELVPIVEER------RNIVPILGDATKPEEYRALV 141 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCT---TSEEEEEESCHHHHHHHHHHHSSC------TTEEEEECCTTCGGGGTTTC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCC---CeEEEEEECCHHHHHHHHHHHhcc------CCCEEEEccCCCcchhhccc
Confidence 668899999999999999999998753 479999999999999999988762 57899888776543222222
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC-CCChhhHHHHHHHHHhCCCCceEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH-PGGREELEAVEAFARSLSVDDWICCKF 250 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (267)
..||+|+++.+ .+.....+++++.++|||||++++...... ..+..........+..+... |+++..
T Consensus 142 ~~~D~v~~~~~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-f~~~~~ 209 (227)
T 1g8a_A 142 PKVDVIFEDVA-----------QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEY-FEVIER 209 (227)
T ss_dssp CCEEEEEECCC-----------STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTT-SEEEEE
T ss_pred CCceEEEECCC-----------CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHHHhh-ceeeeE
Confidence 37999998853 122334569999999999999998843221 11111112222333334444 887776
Q ss_pred eeecCCCCc-eEEEeec
Q 041272 251 QMLNRPLAP-VLVFLFK 266 (267)
Q Consensus 251 ~~~~~~~~p-~~~~~~k 266 (267)
..+...... .+++.+|
T Consensus 210 ~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 210 LNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EECTTTSSSEEEEEEEC
T ss_pred eccCcccCCCEEEEEEe
Confidence 655432222 3444443
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=133.41 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=100.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|++++...+ ...+++++.++..++. .+..
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~----~~~~ 132 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASP------ERFVVGLDISESALAKANETYGSSP---KAEYFSFVKEDVFTWR----PTEL 132 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBT------TEEEEEECSCHHHHHHHHHHHTTSG---GGGGEEEECCCTTTCC----CSSC
T ss_pred CCCCEEEeCCCCCHHHHHHHhC------CCeEEEEECCHHHHHHHHHHhhccC---CCcceEEEECchhcCC----CCCC
Confidence 3459999999999999999864 5799999999999999999998754 3568999987765432 2348
Q ss_pred EEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEecCCCC--ChhhHHHHHHHHHhCCCCceEEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVYVGHPG--GREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
||+|+++. ++++ .+....+++++.++|||||++++..+..... +.........+.+.+...+|.++.
T Consensus 133 fD~v~~~~---------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 133 FDLIFDYV---------FFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp EEEEEEES---------STTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEE
T ss_pred eeEEEECh---------hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEE
Confidence 99999873 2222 3467899999999999999999887743211 111001122334444556788888
Q ss_pred EeeecC
Q 041272 250 FQMLNR 255 (267)
Q Consensus 250 ~~~~~~ 255 (267)
......
T Consensus 204 ~~~~~~ 209 (235)
T 3lcc_A 204 VEENPH 209 (235)
T ss_dssp EEECTT
T ss_pred EEecCC
Confidence 776655
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=131.56 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=89.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||||||+|.++..+|+..+ +.+|+|||+|+.+++.|++++...+ ..|+.++++|..++.....++.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p----~~~v~giD~s~~~l~~a~~~~~~~~----l~nv~~~~~Da~~~l~~~~~~~ 104 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRP----EQDFLGIEVHSPGVGACLASAHEEG----LSNLRVMCHDAVEVLHKMIPDN 104 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCT----TSEEEEECSCHHHHHHHHHHHHHTT----CSSEEEECSCHHHHHHHHSCTT
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCC----CCeEEEEEecHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHcCCC
Confidence 3678999999999999999999853 5899999999999999999998877 5789999998887543222345
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
++|.|+++++. |..........-....+++++.++|||||++++.+.
T Consensus 105 ~~d~v~~~~~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 105 SLRMVQLFFPD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CEEEEEEESCC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred ChheEEEeCCC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 89999988432 111100000000113699999999999999998875
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=133.99 Aligned_cols=141 Identities=14% Similarity=0.159 Sum_probs=103.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|+++++..+ ...+++++.++..++ ..++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~----~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~~~ 112 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-V----TGQVTGLDFLSGFIDIFNRNARQSG---LQNRVTGIVGSMDDL---PFRN 112 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-C----SSEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC---CCCT
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-c----CCEEEEEeCCHHHHHHHHHHHHHcC---CCcCcEEEEcChhhC---CCCC
Confidence 578899999999999999999987 2 4799999999999999999998876 346799998776543 2335
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCC-ChhhHH-----------HHHHHHHh
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPG-GREELE-----------AVEAFARS 239 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~-----------~~~~~~~~ 239 (267)
.+||+|+++. ++++. +...+++++.++|||||++++.+...... ...... ....+.+.
T Consensus 113 ~~fD~i~~~~---------~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 113 EELDLIWSEG---------AIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAK 182 (267)
T ss_dssp TCEEEEEESS---------CGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHH
T ss_pred CCEEEEEEcC---------Cceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHH
Confidence 6899999983 33333 56789999999999999999987532111 111111 12234444
Q ss_pred CCCCceEEEEEeee
Q 041272 240 LSVDDWICCKFQML 253 (267)
Q Consensus 240 l~~~~~~~~~~~~~ 253 (267)
+...+|.++....+
T Consensus 183 l~~aGf~~v~~~~~ 196 (267)
T 3kkz_A 183 IHKAGYLPVATFIL 196 (267)
T ss_dssp HHHTTEEEEEEEEC
T ss_pred HHHCCCEEEEEEEC
Confidence 55578888776554
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-16 Score=132.75 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=91.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+ ...+++++.++..++ ..+
T Consensus 58 ~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~---~~~ 126 (273)
T 3bus_A 58 DVRSGDRVLDVGCGIGKPAVRLATAR-----DVRVTGISISRPQVNQANARATAAG---LANRVTFSYADAMDL---PFE 126 (273)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHS-----CCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC---CSC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhc-----CCEEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEECccccC---CCC
Confidence 35688999999999999999999875 3799999999999999999998866 345799988766543 233
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+..||+|++. .++++.++...+++++.++|||||++++.++..
T Consensus 127 ~~~fD~v~~~---------~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 127 DASFDAVWAL---------ESLHHMPDRGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp TTCEEEEEEE---------SCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred CCCccEEEEe---------chhhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence 4589999988 344445566899999999999999999987643
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-16 Score=124.90 Aligned_cols=111 Identities=16% Similarity=0.067 Sum_probs=90.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|+++++.|+++++.++ ..++++++++..++..... +.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~----~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~-~~ 112 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-G----AASVLFVESDQRSAAVIARNIEALG----LSGATLRRGAVAAVVAAGT-TS 112 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-T----CSEEEEEECCHHHHHHHHHHHHHHT----CSCEEEEESCHHHHHHHCC-SS
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-C----CCeEEEEECCHHHHHHHHHHHHHcC----CCceEEEEccHHHHHhhcc-CC
Confidence 47889999999999999988875 2 3689999999999999999999877 3789999988877654332 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHh--cccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAER--ILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~~ 221 (267)
.||+|++++++.. ..+...++++++.+ +|||||++++....
T Consensus 113 ~fD~i~~~~p~~~--------~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 113 PVDLVLADPPYNV--------DSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp CCSEEEECCCTTS--------CHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CccEEEECCCCCc--------chhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 7999999965421 13566789999998 99999999987764
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=132.47 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=103.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.|++++...+ ...+++++.++..++ ..+
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-----~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~---~~~ 111 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVK-----GQITGIDLFPDFIEIFNENAVKAN---CADRVKGITGSMDNL---PFQ 111 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCC-----SEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC---SSC
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCC-----CeEEEEECCHHHHHHHHHHHHHcC---CCCceEEEECChhhC---CCC
Confidence 356788999999999999999999852 499999999999999999998877 345699998776443 234
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCC-ChhhH-H----------HHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPG-GREEL-E----------AVEAFAR 238 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~-~----------~~~~~~~ 238 (267)
+.+||+|+++. ++++. +..++++++.++|||||++++.+...... ..... . ....+.+
T Consensus 112 ~~~fD~v~~~~---------~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (257)
T 3f4k_A 112 NEELDLIWSEG---------AIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCID 181 (257)
T ss_dssp TTCEEEEEEES---------CSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHH
T ss_pred CCCEEEEEecC---------hHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHH
Confidence 56899999983 33333 46789999999999999999987531111 11111 1 1233444
Q ss_pred hCCCCceEEEEEeee
Q 041272 239 SLSVDDWICCKFQML 253 (267)
Q Consensus 239 ~l~~~~~~~~~~~~~ 253 (267)
.+...+|.++.....
T Consensus 182 ~l~~aGf~~v~~~~~ 196 (257)
T 3f4k_A 182 KMERAGYTPTAHFIL 196 (257)
T ss_dssp HHHHTTEEEEEEEEC
T ss_pred HHHHCCCeEEEEEEC
Confidence 455578888775544
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=133.81 Aligned_cols=110 Identities=16% Similarity=0.224 Sum_probs=90.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|++++...+ ..++.++.++..++ ..+
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~------~~v~gvD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~l---~~~ 100 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFV------KKVVAFDLTEDILKVARAFIEGNG----HQQVEYVQGDAEQM---PFT 100 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGS------SEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCC-CC---CSC
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhC------CEEEEEeCCHHHHHHHHHHHHhcC----CCceEEEEecHHhC---CCC
Confidence 45688999999999999999999873 589999999999999999998766 45789988776543 334
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+..||+|+++. +.++.++...+++++.++|||||++++.+...
T Consensus 101 ~~~fD~V~~~~---------~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~ 143 (260)
T 1vl5_A 101 DERFHIVTCRI---------AAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 143 (260)
T ss_dssp TTCEEEEEEES---------CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred CCCEEEEEEhh---------hhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence 46899999983 45555677899999999999999999986643
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.69 E-value=8.5e-16 Score=137.75 Aligned_cols=119 Identities=22% Similarity=0.334 Sum_probs=95.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc----ccccceEEEecChhhhhhc
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK----AEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~----~~~~~v~~~~~~~~~l~~~ 167 (267)
+.++.+|||+|||+|.++..+++.+++ +.+|+|+|+|+.+++.|+++++..... ....+++++.++..++...
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~ 157 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGE---HGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA 157 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTT---TCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc
Confidence 557889999999999999999998753 579999999999999999998754100 0125899999887766433
Q ss_pred ---CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 168 ---VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 168 ---~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..++.+||+|+++. ++++.++...+++++.++|||||++++.+...
T Consensus 158 ~~~~~~~~~fD~V~~~~---------~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 158 EPEGVPDSSVDIVISNC---------VCNLSTNKLALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp BSCCCCTTCEEEEEEES---------CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ccCCCCCCCEEEEEEcc---------chhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 34456899999993 45555667899999999999999999987644
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-16 Score=128.75 Aligned_cols=116 Identities=21% Similarity=0.147 Sum_probs=89.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.+++.|++++...+ ..++++++++..++...+. +.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~gvD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~-~~ 110 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNP----DINYIGIDIQKSVLSYALDKVLEVG----VPNIKLLWVDGSDLTDYFE-DG 110 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHHC----CSSEEEEECCSSCGGGTSC-TT
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCC----CCCEEEEEcCHHHHHHHHHHHHHcC----CCCEEEEeCCHHHHHhhcC-CC
Confidence 4678999999999999999999853 5899999999999999999998877 4789999988776554333 34
Q ss_pred cEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||.|+++++. |.... -+.. -....+++++.++|||||++++.+.
T Consensus 111 ~~D~i~~~~~~-~~~~~--~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 111 EIDRLYLNFSD-PWPKK--RHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp CCSEEEEESCC-CCCSG--GGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCCEEEEECCC-Ccccc--chhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 79999999532 11110 0111 1236899999999999999988763
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-16 Score=128.76 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=89.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||||||+|.++..+|+..+ +.+|+|||+|+.+++.|++++...+ ..++++++++..++...+. +.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~giD~s~~~l~~a~~~~~~~~----~~nv~~~~~d~~~l~~~~~-~~ 107 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNP----DINYIGIELFKSVIVTAVQKVKDSE----AQNVKLLNIDADTLTDVFE-PG 107 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCT----TSEEEEECSCHHHHHHHHHHHHHSC----CSSEEEECCCGGGHHHHCC-TT
T ss_pred CCCceEEEEecCCCHHHHHHHHHCC----CCCEEEEEechHHHHHHHHHHHHcC----CCCEEEEeCCHHHHHhhcC-cC
Confidence 4678999999999999999999853 5899999999999999999998877 4789999988877655443 34
Q ss_pred cEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+|.|+.+++. |.... .+.. -....+++++.++|||||.+++.+.
T Consensus 108 ~~d~v~~~~~~-p~~~~--~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 108 EVKRVYLNFSD-PWPKK--RHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp SCCEEEEESCC-CCCSG--GGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CcCEEEEECCC-CCcCc--cccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 68988887532 11110 0111 1136899999999999999998763
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-16 Score=127.95 Aligned_cols=144 Identities=8% Similarity=0.104 Sum_probs=97.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++.++ .++|+|+|+|+.+++.|+++++.+ .++.++.++..+.......
T Consensus 71 ~~~~~~~VLDlGcG~G~~~~~la~~~~----~~~v~gvD~s~~~~~~a~~~~~~~------~~v~~~~~d~~~~~~~~~~ 140 (230)
T 1fbn_A 71 PIKRDSKILYLGASAGTTPSHVADIAD----KGIVYAIEYAPRIMRELLDACAER------ENIIPILGDANKPQEYANI 140 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTT----TSEEEEEESCHHHHHHHHHHTTTC------TTEEEEECCTTCGGGGTTT
T ss_pred CCCCCCEEEEEcccCCHHHHHHHHHcC----CcEEEEEECCHHHHHHHHHHhhcC------CCeEEEECCCCCccccccc
Confidence 356889999999999999999999864 379999999999999999987652 5788888777653221211
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC-CCCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG-HPGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
...||+|+.++ +. +.....+++++.++|||||+++++.... ............+.+..+...+|.+..
T Consensus 141 ~~~~D~v~~~~---~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~~l~~~Gf~~~~ 209 (230)
T 1fbn_A 141 VEKVDVIYEDV---AQ--------PNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVD 209 (230)
T ss_dssp SCCEEEEEECC---CS--------TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEE
T ss_pred CccEEEEEEec---CC--------hhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHHHHHHCCCEEEE
Confidence 24799999652 11 2234678999999999999999973321 111111111111122233445688777
Q ss_pred EeeecC
Q 041272 250 FQMLNR 255 (267)
Q Consensus 250 ~~~~~~ 255 (267)
...+..
T Consensus 210 ~~~~~~ 215 (230)
T 1fbn_A 210 EVDIEP 215 (230)
T ss_dssp EEECTT
T ss_pred EEccCC
Confidence 666544
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-16 Score=133.90 Aligned_cols=109 Identities=18% Similarity=0.297 Sum_probs=91.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+ ...+++++.++..++.... +
T Consensus 66 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~--~ 134 (285)
T 4htf_A 66 GPQKLRVLDAGGGEGQTAIKMAER------GHQVILCDLSAQMIDRAKQAAEAKG---VSDNMQFIHCAAQDVASHL--E 134 (285)
T ss_dssp CSSCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHC-C---CGGGEEEEESCGGGTGGGC--S
T ss_pred CCCCCEEEEeCCcchHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEEcCHHHhhhhc--C
Confidence 345779999999999999999987 3799999999999999999998876 3478999998877665433 3
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+||+|+++ .++++.++...+++++.++|||||++++..+
T Consensus 135 ~~fD~v~~~---------~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 135 TPVDLILFH---------AVLEWVADPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp SCEEEEEEE---------SCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceEEEEC---------chhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 579999998 3555556678999999999999999999876
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=135.11 Aligned_cols=117 Identities=12% Similarity=0.089 Sum_probs=91.1
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||||||+|.++..+++..+ .+|+|+|+|+++++.|++++...+ ...+++++.++..++
T Consensus 68 ~~~~~~~~vLDiGcG~G~~~~~la~~~~-----~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~----- 134 (302)
T 3hem_A 68 LNLEPGMTLLDIGCGWGSTMRHAVAEYD-----VNVIGLTLSENQYAHDKAMFDEVD---SPRRKEVRIQGWEEF----- 134 (302)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHHC-----CEEEEEECCHHHHHHHHHHHHHSC---CSSCEEEEECCGGGC-----
T ss_pred cCCCCcCEEEEeeccCcHHHHHHHHhCC-----CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECCHHHc-----
Confidence 3467899999999999999999999863 689999999999999999998877 345899998777554
Q ss_pred CCCcEEEEEEeCCC--CCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 170 KSTAVRLVAFNLGY--LPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 170 ~~~~~d~ii~~~~~--lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+..||+|+++... ++..+ ..........+++++.++|||||++++.++..
T Consensus 135 -~~~fD~v~~~~~~~~~~d~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 186 (302)
T 3hem_A 135 -DEPVDRIVSLGAFEHFADGA--GDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 186 (302)
T ss_dssp -CCCCSEEEEESCGGGTTCCS--SCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred -CCCccEEEEcchHHhcCccc--cccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 3479999987321 22110 00012455799999999999999999988753
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-16 Score=135.77 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=106.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+ ...+++++.++..++ ..++
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~~~ 183 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF-----GSRVEGVTLSAAQADFGNRRARELR---IDDHVRSRVCNMLDT---PFDK 183 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC---CCCT
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcC---CCCceEEEECChhcC---CCCC
Confidence 5678999999999999999999985 3689999999999999999999877 345899998776543 2344
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCC---hhhHH-----------HHHHHH
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGG---REELE-----------AVEAFA 237 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~-----------~~~~~~ 237 (267)
..||+|+++ .++++. +...+++++.++|||||++++.++...... ..... ....+.
T Consensus 184 ~~fD~V~~~---------~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 253 (312)
T 3vc1_A 184 GAVTASWNN---------ESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYL 253 (312)
T ss_dssp TCEEEEEEE---------SCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHH
T ss_pred CCEeEEEEC---------CchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHH
Confidence 589999998 234434 378999999999999999999876433211 11111 123445
Q ss_pred HhCCCCceEEEEEeeec
Q 041272 238 RSLSVDDWICCKFQMLN 254 (267)
Q Consensus 238 ~~l~~~~~~~~~~~~~~ 254 (267)
+.+...+|+++....+.
T Consensus 254 ~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 254 RAMADNRLVPHTIVDLT 270 (312)
T ss_dssp HHHHTTTEEEEEEEECH
T ss_pred HHHHHCCCEEEEEEeCC
Confidence 55666789887766543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-16 Score=129.25 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=91.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++...+ ..+++++.++..++ ..+
T Consensus 18 ~~~~~~~vLDiGcG~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~---~~~ 84 (239)
T 1xxl_A 18 ECRAEHRVLDIGAGAGHTALAFSPYV------QECIGVDATKEMVEVASSFAQEKG----VENVRFQQGTAESL---PFP 84 (239)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGS------SEEEEEESCHHHHHHHHHHHHHHT----CCSEEEEECBTTBC---CSC
T ss_pred CcCCCCEEEEEccCcCHHHHHHHHhC------CEEEEEECCHHHHHHHHHHHHHcC----CCCeEEEecccccC---CCC
Confidence 57789999999999999999999873 589999999999999999998876 46788888766443 334
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+..||+|+++ .+.++.++...+++++.++|||||++++.+...
T Consensus 85 ~~~fD~v~~~---------~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 85 DDSFDIITCR---------YAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp TTCEEEEEEE---------SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred CCcEEEEEEC---------CchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 4689999998 344455567899999999999999999987643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=127.98 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=90.7
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||||||+|..+..+++.++. +++|+|+|+++++++.|+++++..+ ...+++++.++..+........
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~l~~~~~~ 134 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPA---DGQLLTLEADAHHAQVARENLQLAG---VDQRVTLREGPALQSLESLGEC 134 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCT---TCEEEEEECCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHTCCSC
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHhcCCC
Confidence 456789999999999999999998753 5899999999999999999999877 3458999998887654433333
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|+.+.. ......+++++.++|||||++++...
T Consensus 135 ~~fD~V~~d~~------------~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 135 PAFDLIFIDAD------------KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp CCCSEEEECSC------------GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CCeEEEEECCc------------hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 47999998731 34456899999999999999987654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=138.11 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=90.1
Q ss_pred HhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc
Q 041272 88 WKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 88 ~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 167 (267)
+...++++.+|||+|||+|..+..++... +|+.+|+|+|+|+.+++.|++++...+ ...++++++++..++.
T Consensus 112 l~~~l~~~~~vLDiGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~-- 183 (305)
T 3ocj_A 112 LQRHLRPGCVVASVPCGWMSELLALDYSA---CPGVQLVGIDYDPEALDGATRLAAGHA---LAGQITLHRQDAWKLD-- 183 (305)
T ss_dssp HHHHCCTTCEEEETTCTTCHHHHTSCCTT---CTTCEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEECCGGGCC--
T ss_pred HHhhCCCCCEEEEecCCCCHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECchhcCC--
Confidence 34557889999999999999999986332 236899999999999999999998876 3556999987765542
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceee---chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVIT---TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+ ..||+|+++. +.+ .+....++++++.++|||||++++.++.
T Consensus 184 -~~-~~fD~v~~~~---------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 229 (305)
T 3ocj_A 184 -TR-EGYDLLTSNG---------LNIYEPDDARVTELYRRFWQALKPGGALVTSFLT 229 (305)
T ss_dssp -CC-SCEEEEECCS---------SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred -cc-CCeEEEEECC---------hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 23 5899999873 222 2333456899999999999999998753
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.3e-16 Score=131.75 Aligned_cols=109 Identities=16% Similarity=0.218 Sum_probs=89.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||||||+|.++..+++..+ .+|+|+|+|+++++.|++++...+ ...+++++..+..++.
T Consensus 61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-----~~v~gvd~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~----- 127 (287)
T 1kpg_A 61 GLQPGMTLLDVGCGWGATMMRAVEKYD-----VNVVGLTLSKNQANHVQQLVANSE---NLRSKRVLLAGWEQFD----- 127 (287)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHHC-----CEEEEEESCHHHHHHHHHHHHTCC---CCSCEEEEESCGGGCC-----
T ss_pred CCCCcCEEEEECCcccHHHHHHHHHcC-----CEEEEEECCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC-----
Confidence 467889999999999999999997653 599999999999999999998766 3468899887764432
Q ss_pred CCcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..||+|++.. ++++. ++...+++++.++|||||++++.++..
T Consensus 128 -~~fD~v~~~~---------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 128 -EPVDRIVSIG---------AFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp -CCCSEEEEES---------CGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred -CCeeEEEEeC---------chhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 4799999872 33333 567899999999999999999987643
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-16 Score=134.57 Aligned_cols=111 Identities=11% Similarity=0.137 Sum_probs=91.6
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.|++++...+ ...+++++.++..++ ..+
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-----~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~---~~~ 147 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFG-----VSIDCLNIAPVQNKRNEEYNNQAG---LADNITVKYGSFLEI---PCE 147 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC-----CEEEEEESCHHHHHHHHHHHHHHT---CTTTEEEEECCTTSC---SSC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEEcCcccC---CCC
Confidence 457889999999999999999999863 699999999999999999998776 346799988766443 334
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+..||+|++. .++++.++...+++++.++|||||++++.++.
T Consensus 148 ~~~fD~v~~~---------~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 148 DNSYDFIWSQ---------DAFLHSPDKLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp TTCEEEEEEE---------SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCEeEEEec---------chhhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 5689999988 34445555789999999999999999998764
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=126.94 Aligned_cols=115 Identities=18% Similarity=0.304 Sum_probs=88.8
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-ccccceEEEecChhhhhhcC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-AEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~ 168 (267)
..++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+.. ....++.++..+..++ .
T Consensus 26 ~~~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~ 96 (235)
T 3sm3_A 26 NYLQEDDEILDIGCGSGKISLELASK------GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL---S 96 (235)
T ss_dssp HHCCTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC---C
T ss_pred HhCCCCCeEEEECCCCCHHHHHHHhC------CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc---C
Confidence 34678899999999999999999987 369999999999999999998876511 0023678887665443 3
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeech---hhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTS---ETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.++..||+|+++. ++++. .....+++++.++|||||+++++++..
T Consensus 97 ~~~~~~D~v~~~~---------~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 97 FHDSSFDFAVMQA---------FLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp SCTTCEEEEEEES---------CGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred CCCCceeEEEEcc---------hhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 3356899999983 33333 334489999999999999999987743
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-15 Score=127.90 Aligned_cols=130 Identities=13% Similarity=0.113 Sum_probs=98.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.+++.|+++++.++ ..++++++++..+. .. ..
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~----~~~v~~vD~s~~~l~~a~~n~~~~~----~~~v~~~~~d~~~~---~~-~~ 175 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERP----DCEIIAVDRMPDAVSLAQRNAQHLA----IKNIHILQSDWFSA---LA-GQ 175 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT----TSEEEEECSSHHHHHHHHHHHHHHT----CCSEEEECCSTTGG---GT-TC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEEcchhhh---cc-cC
Confidence 5678999999999999999998754 4899999999999999999998877 45799998776443 22 34
Q ss_pred cEEEEEEeCCCCCCCCCc-----eeech-----------hhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHH
Q 041272 173 AVRLVAFNLGYLPGGDKS-----VITTS-----------ETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAF 236 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~-----~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 236 (267)
.||+|++|++|++..+.. ..+.+ .....+++++.++|||||++++.... .....+.++
T Consensus 176 ~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~------~~~~~~~~~ 249 (276)
T 2b3t_A 176 QFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW------QQGEAVRQA 249 (276)
T ss_dssp CEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS------SCHHHHHHH
T ss_pred CccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc------hHHHHHHHH
Confidence 799999999998765411 11111 45688999999999999999886432 123445555
Q ss_pred HHhC
Q 041272 237 ARSL 240 (267)
Q Consensus 237 ~~~l 240 (267)
++..
T Consensus 250 l~~~ 253 (276)
T 2b3t_A 250 FILA 253 (276)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 5553
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-16 Score=125.24 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=106.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.+.++|||+|||+|.+++.++...+ +.+|+++|+|+.|++.+++++..++ ...++.+. +. .... .
T Consensus 46 ~l~~~~~VLDlGCG~GplAl~l~~~~p----~a~~~A~Di~~~~leiar~~~~~~g---~~~~v~~~--d~---~~~~-~ 112 (200)
T 3fzg_A 46 NIKHVSSILDFGCGFNPLALYQWNENE----KIIYHAYDIDRAEIAFLSSIIGKLK---TTIKYRFL--NK---ESDV-Y 112 (200)
T ss_dssp HSCCCSEEEEETCTTHHHHHHHHCSSC----CCEEEEECSCHHHHHHHHHHHHHSC---CSSEEEEE--CC---HHHH-T
T ss_pred hcCCCCeEEEecCCCCHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHhcC---CCccEEEe--cc---cccC-C
Confidence 467788999999999999999988754 5799999999999999999999887 23367762 22 1112 2
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC----CCChhhHHHHHHHHHhCCCCceE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH----PGGREELEAVEAFARSLSVDDWI 246 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~ 246 (267)
..+||+|+.. .++|..++.+..+.++++.|||||+++-.. ... ..+. +......|.+......+.
T Consensus 113 ~~~~DvVLa~---------k~LHlL~~~~~al~~v~~~L~pggvfISfp-tksl~Gr~~gm-~~~Y~~~~~~~~~~~~~~ 181 (200)
T 3fzg_A 113 KGTYDVVFLL---------KMLPVLKQQDVNILDFLQLFHTQNFVISFP-IKSLSGKEKGM-EENYQLWFESFTKGWIKI 181 (200)
T ss_dssp TSEEEEEEEE---------TCHHHHHHTTCCHHHHHHTCEEEEEEEEEE-CCCCC--CTTC-CCCHHHHHHHHTTTTSCE
T ss_pred CCCcChhhHh---------hHHHhhhhhHHHHHHHHHHhCCCCEEEEeC-hHHhcCCCcch-hhhHHHHHHHhccCccee
Confidence 3479999988 466666777778889999999999884332 111 1121 122344566667777777
Q ss_pred EEEEeeecCCCCceEEEeecC
Q 041272 247 CCKFQMLNRPLAPVLVFLFKR 267 (267)
Q Consensus 247 ~~~~~~~~~~~~p~~~~~~k~ 267 (267)
+.+..+-| ..+++++|+
T Consensus 182 ~~~~~~~n----El~y~~~~~ 198 (200)
T 3fzg_A 182 LDSKVIGN----ELVYITSGF 198 (200)
T ss_dssp EEEEEETT----EEEEEECCC
T ss_pred eeeeeeCc----eEEEEEecc
Confidence 77777744 566666653
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=136.68 Aligned_cols=123 Identities=12% Similarity=0.043 Sum_probs=94.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccccc-ceEEEecChhhhhh-cCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG-LVKLFNMCHSRMEE-IVPK 170 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~-~v~~~~~~~~~l~~-~~~~ 170 (267)
.++.+|||+|||+|.+++.+|+.. ..+|+|+|+|+.+++.|++|++.++ ... +++++++|..+... ....
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-----a~~V~~vD~s~~al~~A~~N~~~n~---~~~~~v~~~~~D~~~~l~~~~~~ 282 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-----AMATTSVDLAKRSRALSLAHFEANH---LDMANHQLVVMDVFDYFKYARRH 282 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-----BSEEEEEESCTTHHHHHHHHHHHTT---CCCTTEEEEESCHHHHHHHHHHT
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHHHHcC---CCccceEEEECCHHHHHHHHHHh
Confidence 678899999999999999999851 2589999999999999999999987 233 89999988876433 2222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
+..||+|++|+++................++++.+.++|+|||++++++....
T Consensus 283 ~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 283 HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 34799999998775332222333445667889999999999999999887544
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=127.22 Aligned_cols=136 Identities=17% Similarity=0.149 Sum_probs=97.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++...+ ..++.++..+..++ ..++..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~---~~~~~~ 146 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-----FREVDMVDITEDFLVQAKTYLGEEG----KRVRNYFCCGLQDF---TPEPDS 146 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-----CSEEEEEESCHHHHHHHHHHTGGGG----GGEEEEEECCGGGC---CCCSSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-----CCEEEEEeCCHHHHHHHHHHhhhcC----CceEEEEEcChhhc---CCCCCC
Confidence 57899999999999999998874 2589999999999999999987754 35788887665433 334457
Q ss_pred EEEEEEeCCCCCCCCCceeechh--hHHHHHHHHHhcccCCcEEEEEEecCCC-------CC--hhhHHHHHHHHHhCCC
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSE--TTKMALEAAERILIPGGLISMVVYVGHP-------GG--REELEAVEAFARSLSV 242 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~-------~~--~~~~~~~~~~~~~l~~ 242 (267)
||+|+++. ++++.+ ....+++++.++|||||++++.++.... .. ......+.++++.
T Consensus 147 fD~v~~~~---------~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 214 (241)
T 2ex4_A 147 YDVIWIQW---------VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICS--- 214 (241)
T ss_dssp EEEEEEES---------CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHH---
T ss_pred EEEEEEcc---------hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHH---
Confidence 99999983 333333 3468999999999999999997753221 00 0123444455544
Q ss_pred CceEEEEEeee
Q 041272 243 DDWICCKFQML 253 (267)
Q Consensus 243 ~~~~~~~~~~~ 253 (267)
.+|+++.....
T Consensus 215 aGf~~~~~~~~ 225 (241)
T 2ex4_A 215 AGLSLLAEERQ 225 (241)
T ss_dssp TTCCEEEEEEC
T ss_pred cCCeEEEeeec
Confidence 56777665544
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-16 Score=130.03 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=88.5
Q ss_pred HhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc
Q 041272 88 WKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 88 ~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 167 (267)
+...++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ..+++++.++..++
T Consensus 47 l~~~~~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~--- 110 (242)
T 3l8d_A 47 FEQYVKKEAEVLDVGCGDGYGTYKLSRT------GYKAVGVDISEVMIQKGKERGE-------GPDLSFIKGDLSSL--- 110 (242)
T ss_dssp HHHHSCTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHTTTC-------BTTEEEEECBTTBC---
T ss_pred HHHHcCCCCeEEEEcCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhcc-------cCCceEEEcchhcC---
Confidence 3345678899999999999999999987 3699999999999999998752 36788888766543
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..++..||+|++. .++++.++...+++++.++|||||++++.++.
T Consensus 111 ~~~~~~fD~v~~~---------~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 155 (242)
T 3l8d_A 111 PFENEQFEAIMAI---------NSLEWTEEPLRALNEIKRVLKSDGYACIAILG 155 (242)
T ss_dssp SSCTTCEEEEEEE---------SCTTSSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCCCccEEEEc---------ChHhhccCHHHHHHHHHHHhCCCeEEEEEEcC
Confidence 3345689999988 34455566789999999999999999998863
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=126.76 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=86.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|..+..+++..+ +.+|+|+|+|+.+++.|++++... .+++++.++..++ ..+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~---~~~- 107 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYP----EATFTLVDMSEKMLEIAKNRFRGN------LKVKYIEADYSKY---DFE- 107 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCT----TCEEEEEESCHHHHHHHHHHTCSC------TTEEEEESCTTTC---CCC-
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHhhccC------CCEEEEeCchhcc---CCC-
Confidence 35678999999999999999999853 589999999999999999987653 3788888766443 222
Q ss_pred CcEEEEEEeCCCCCCCCCceeechh--hHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSE--TTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..||+|+++. ++++.+ ...++++++.++|||||++++.+...
T Consensus 108 ~~fD~v~~~~---------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 108 EKYDMVVSAL---------SIHHLEDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp SCEEEEEEES---------CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred CCceEEEEeC---------ccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 5899999983 333333 33479999999999999999988644
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-16 Score=130.33 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=90.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++... .+++++.++..++ ..+
T Consensus 52 ~~~~~~~vLdiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~---~~~ 117 (266)
T 3ujc_A 52 ELNENSKVLDIGSGLGGGCMYINEKY-----GAHTHGIDICSNIVNMANERVSGN------NKIIFEANDILTK---EFP 117 (266)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHTCCSC------TTEEEEECCTTTC---CCC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHhhcC------CCeEEEECccccC---CCC
Confidence 46688899999999999999999976 369999999999999999987652 5788888766543 334
Q ss_pred CCcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+..||+|+++ .++++. ++...+++++.++|||||++++.++..
T Consensus 118 ~~~fD~v~~~---------~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 118 ENNFDLIYSR---------DAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp TTCEEEEEEE---------SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCcEEEEeHH---------HHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 5689999998 345555 788999999999999999999988643
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-16 Score=125.92 Aligned_cols=136 Identities=16% Similarity=0.036 Sum_probs=99.9
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
.....+...++++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|++++..++ ..++++++++..
T Consensus 49 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~----~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~ 119 (205)
T 3grz_A 49 LAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-G----AKSVLATDISDESMTAAEENAALNG----IYDIALQKTSLL 119 (205)
T ss_dssp HHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHHHHTT----CCCCEEEESSTT
T ss_pred HHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-C----CCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEecccc
Confidence 334444445678899999999999999999875 2 3699999999999999999998877 345888886654
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCC
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSV 242 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (267)
+. . +..||+|+++... .....+++++.++|||||++++..+.. .....+...++.
T Consensus 120 ~~---~--~~~fD~i~~~~~~------------~~~~~~l~~~~~~L~~gG~l~~~~~~~-----~~~~~~~~~~~~--- 174 (205)
T 3grz_A 120 AD---V--DGKFDLIVANILA------------EILLDLIPQLDSHLNEDGQVIFSGIDY-----LQLPKIEQALAE--- 174 (205)
T ss_dssp TT---C--CSCEEEEEEESCH------------HHHHHHGGGSGGGEEEEEEEEEEEEEG-----GGHHHHHHHHHH---
T ss_pred cc---C--CCCceEEEECCcH------------HHHHHHHHHHHHhcCCCCEEEEEecCc-----ccHHHHHHHHHH---
Confidence 32 2 3579999998421 234688999999999999999976632 233444444443
Q ss_pred CceEEEEEee
Q 041272 243 DDWICCKFQM 252 (267)
Q Consensus 243 ~~~~~~~~~~ 252 (267)
.+|++.....
T Consensus 175 ~Gf~~~~~~~ 184 (205)
T 3grz_A 175 NSFQIDLKMR 184 (205)
T ss_dssp TTEEEEEEEE
T ss_pred cCCceEEeec
Confidence 4677666444
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-15 Score=120.04 Aligned_cols=123 Identities=15% Similarity=0.070 Sum_probs=90.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.+++.|++++...+ ...++ ++.++..+.. ...
T Consensus 22 ~~~~~~~vldiG~G~G~~~~~l~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~-~~~~d~~~~~--~~~ 91 (178)
T 3hm2_A 22 APKPHETLWDIGGGSGSIAIEWLRSTP----QTTAVCFEISEERRERILSNAINLG---VSDRI-AVQQGAPRAF--DDV 91 (178)
T ss_dssp CCCTTEEEEEESTTTTHHHHHHHTTSS----SEEEEEECSCHHHHHHHHHHHHTTT---CTTSE-EEECCTTGGG--GGC
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHCC----CCeEEEEeCCHHHHHHHHHHHHHhC---CCCCE-EEecchHhhh--hcc
Confidence 466888999999999999999998853 5899999999999999999998877 23377 6665543211 111
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
...||+|+++... ++ ..+++++.++|||||++++... ..+.......+++...
T Consensus 92 ~~~~D~i~~~~~~---------~~----~~~l~~~~~~L~~gG~l~~~~~-----~~~~~~~~~~~~~~~~ 144 (178)
T 3hm2_A 92 PDNPDVIFIGGGL---------TA----PGVFAAAWKRLPVGGRLVANAV-----TVESEQMLWALRKQFG 144 (178)
T ss_dssp CSCCSEEEECC-T---------TC----TTHHHHHHHTCCTTCEEEEEEC-----SHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEECCcc---------cH----HHHHHHHHHhcCCCCEEEEEee-----ccccHHHHHHHHHHcC
Confidence 2479999987422 11 4799999999999999998776 2234444555555543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.7e-16 Score=133.62 Aligned_cols=120 Identities=14% Similarity=0.116 Sum_probs=93.1
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-cccccccceEEEecChhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-TSKAEKGLVKLFNMCHSR 163 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~~~~~ 163 (267)
..+......++.+|||+|||+|..+..+++.++. +.+|+|+|+|+.+++.|+++++.. + ...++++++++..+
T Consensus 27 ~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~~v~~~~~d~~~ 100 (299)
T 3g5t_A 27 KMIDEYHDGERKLLVDVGCGPGTATLQMAQELKP---FEQIIGSDLSATMIKTAEVIKEGSPD---TYKNVSFKISSSDD 100 (299)
T ss_dssp HHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSC---CSEEEEEESCHHHHHHHHHHHHHCC----CCTTEEEEECCTTC
T ss_pred HHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCC---CCEEEEEeCCHHHHHHHHHHHHhccC---CCCceEEEEcCHHh
Confidence 3333333467899999999999999999987522 589999999999999999999875 2 24789999888766
Q ss_pred hhhcC---CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 MEEIV---PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 l~~~~---~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.... ....+||+|+++ .++++. +...+++++.++|||||++++..+
T Consensus 101 ~~~~~~~~~~~~~fD~V~~~---------~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~ 150 (299)
T 3g5t_A 101 FKFLGADSVDKQKIDMITAV---------ECAHWF-DFEKFQRSAYANLRKDGTIAIWGY 150 (299)
T ss_dssp CGGGCTTTTTSSCEEEEEEE---------SCGGGS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccccccCCCeeEEeHh---------hHHHHh-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 54211 012589999998 344555 778999999999999999998554
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=128.23 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=84.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++.. .+++++.++..++ ..++..
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~d~~~~---~~~~~~ 108 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHG-----AKKVLGIDLSERMLTEAKRKTTS-------PVVCYEQKAIEDI---AIEPDA 108 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHCCC-------TTEEEEECCGGGC---CCCTTC
T ss_pred CCCEEEEECCCCCHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHhhcc-------CCeEEEEcchhhC---CCCCCC
Confidence 78899999999999999999873 13999999999999999998752 5788888776543 334568
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|+++ .++++.++..++++++.++|||||++++.+.
T Consensus 109 fD~v~~~---------~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 109 YNVVLSS---------LALHYIASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp EEEEEEE---------SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEEc---------hhhhhhhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999998 3455556778999999999999999998754
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-16 Score=130.26 Aligned_cols=121 Identities=11% Similarity=0.101 Sum_probs=89.2
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
..+......++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|+++++..+ .++++++++..++
T Consensus 51 ~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~ 120 (236)
T 1zx0_A 51 HALAAAASSKGGRVLEVGFGMAIAASKVQEAP-----IDEHWIIECNDGVFQRLRDWAPRQT-----HKVIPLKGLWEDV 120 (236)
T ss_dssp HHHHHHHTTTCEEEEEECCTTSHHHHHHHTSC-----EEEEEEEECCHHHHHHHHHHGGGCS-----SEEEEEESCHHHH
T ss_pred HHHHhhcCCCCCeEEEEeccCCHHHHHHHhcC-----CCeEEEEcCCHHHHHHHHHHHHhcC-----CCeEEEecCHHHh
Confidence 33333345678899999999999999997652 2589999999999999999887754 5789998887766
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...+ ++.+||+|+++...+. ....+......+++++.++|||||++++..+
T Consensus 121 ~~~~-~~~~fD~V~~d~~~~~----~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 121 APTL-PDGHFDGILYDTYPLS----EETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp GGGS-CTTCEEEEEECCCCCB----GGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred hccc-CCCceEEEEECCcccc----hhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 4323 3458999999411100 0011234556889999999999999987654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=136.70 Aligned_cols=143 Identities=17% Similarity=0.169 Sum_probs=100.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..++ .+++++..+..+. ..++.
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~------g~~V~gvDis~~al~~A~~n~~~~~-----~~v~~~~~D~~~~---~~~~~ 297 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM------GAEVVGVEDDLASVLSLQKGLEANA-----LKAQALHSDVDEA---LTEEA 297 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT------TCEEEEEESBHHHHHHHHHHHHHTT-----CCCEEEECSTTTT---SCTTC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEcchhhc---cccCC
Confidence 36789999999999999999987 3699999999999999999999876 2478887665433 33346
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHh---CCCCceEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARS---LSVDDWICCK 249 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~ 249 (267)
+||+|++|+++.... ........++++++.++|||||++++++..... ....+...+.. +...+|.+.+
T Consensus 298 ~fD~Ii~npp~~~~~----~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~----~~~~l~~~f~~v~~l~~~gF~Vl~ 369 (381)
T 3dmg_A 298 RFDIIVTNPPFHVGG----AVILDVAQAFVNVAAARLRPGGVFFLVSNPFLK----YEPLLEEKFGAFQTLKVAEYKVLF 369 (381)
T ss_dssp CEEEEEECCCCCTTC----SSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSC----HHHHHHHHHSCCEEEEESSSEEEE
T ss_pred CeEEEEECCchhhcc----cccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCC----hHHHHHHhhccEEEEeCCCEEEEE
Confidence 899999997553211 112456779999999999999999998764221 12233333322 2446677766
Q ss_pred EeeecCCC
Q 041272 250 FQMLNRPL 257 (267)
Q Consensus 250 ~~~~~~~~ 257 (267)
....+.++
T Consensus 370 a~~~~~~~ 377 (381)
T 3dmg_A 370 AEKRGRHH 377 (381)
T ss_dssp EECC----
T ss_pred EEEecccc
Confidence 55555443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.7e-16 Score=131.97 Aligned_cols=105 Identities=11% Similarity=0.077 Sum_probs=86.3
Q ss_pred hhcCCCCEEEEecCCCChHHH-HHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 90 HVVRKGDTVVDATCGNGYDTL-MMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~-~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..++++++|||||||+|.++. .+|+.. +++|+|||+|++|++.|++++++.+ . .++++++++..++.
T Consensus 118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~-----ga~V~gIDis~~~l~~Ar~~~~~~g---l-~~v~~v~gDa~~l~--- 185 (298)
T 3fpf_A 118 GRFRRGERAVFIGGGPLPLTGILLSHVY-----GMRVNVVEIEPDIAELSRKVIEGLG---V-DGVNVITGDETVID--- 185 (298)
T ss_dssp TTCCTTCEEEEECCCSSCHHHHHHHHTT-----CCEEEEEESSHHHHHHHHHHHHHHT---C-CSEEEEESCGGGGG---
T ss_pred cCCCCcCEEEEECCCccHHHHHHHHHcc-----CCEEEEEECCHHHHHHHHHHHHhcC---C-CCeEEEECchhhCC---
Confidence 467899999999999997764 455542 5899999999999999999999877 3 79999998886653
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..||+|+.+.. .+++.++++++.++|||||++++...
T Consensus 186 --d~~FDvV~~~a~------------~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 186 --GLEFDVLMVAAL------------AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp --GCCCSEEEECTT------------CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred --CCCcCEEEECCC------------ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 347999988632 24557999999999999999998775
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=135.28 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=88.0
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...++++.+|||+|||+|.++..+|+... .+|+|+|+|+.+++.|++|++.++ ...+++++++|..++..
T Consensus 120 ~~~~~~~~~VLDlgcG~G~~~~~la~~~~-----~~V~~vD~s~~~~~~a~~n~~~n~---~~~~v~~~~~D~~~~~~-- 189 (278)
T 2frn_A 120 AKVAKPDELVVDMFAGIGHLSLPIAVYGK-----AKVIAIEKDPYTFKFLVENIHLNK---VEDRMSAYNMDNRDFPG-- 189 (278)
T ss_dssp HHHCCTTCEEEETTCTTTTTHHHHHHHTC-----CEEEEECCCHHHHHHHHHHHHHTT---CTTTEEEECSCTTTCCC--
T ss_pred HHhCCCCCEEEEecccCCHHHHHHHHhCC-----CEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEECCHHHhcc--
Confidence 33467899999999999999999998731 379999999999999999999887 34568999877655433
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+..||+|+++++. ...++++++.++|||||++++..+.
T Consensus 190 --~~~fD~Vi~~~p~-------------~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 190 --ENIADRILMGYVV-------------RTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp --CSCEEEEEECCCS-------------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred --cCCccEEEECCch-------------hHHHHHHHHHHHCCCCeEEEEEEee
Confidence 4589999998542 1147889999999999999998775
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-15 Score=118.01 Aligned_cols=122 Identities=24% Similarity=0.231 Sum_probs=93.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|++++..++ ...+++++.++..+. ++.
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~------~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~---~~~ 97 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV------RRVYAIDRNPEAISTTEMNLQRHG---LGDNVTLMEGDAPEA---LCK 97 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS------SEEEEEESCHHHHHHHHHHHHHTT---CCTTEEEEESCHHHH---HTT
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc------CEEEEEECCHHHHHHHHHHHHHcC---CCcceEEEecCHHHh---ccc
Confidence 46788999999999999999999873 689999999999999999998876 236888888766542 122
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
...||+|+++... .....+++++.++|+|||++++..+. ......+..+++...
T Consensus 98 ~~~~D~v~~~~~~------------~~~~~~l~~~~~~l~~gG~l~~~~~~-----~~~~~~~~~~l~~~g 151 (192)
T 1l3i_A 98 IPDIDIAVVGGSG------------GELQEILRIIKDKLKPGGRIIVTAIL-----LETKFEAMECLRDLG 151 (192)
T ss_dssp SCCEEEEEESCCT------------TCHHHHHHHHHHTEEEEEEEEEEECB-----HHHHHHHHHHHHHTT
T ss_pred CCCCCEEEECCch------------HHHHHHHHHHHHhcCCCcEEEEEecC-----cchHHHHHHHHHHCC
Confidence 1379999987321 22368999999999999999987762 334445555565544
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.3e-16 Score=126.53 Aligned_cols=138 Identities=15% Similarity=0.229 Sum_probs=97.7
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-CC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-PK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~~ 170 (267)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++ .++.++..+..++.... ..
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~~~ 113 (227)
T 3e8s_A 50 GRQPERVLDLGCGEGWLLRALADR------GIEAVGVDGDRTLVDAARAA----------GAGEVHLASYAQLAEAKVPV 113 (227)
T ss_dssp HTCCSEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHT----------CSSCEEECCHHHHHTTCSCC
T ss_pred cCCCCEEEEeCCCCCHHHHHHHHC------CCEEEEEcCCHHHHHHHHHh----------cccccchhhHHhhccccccc
Confidence 346789999999999999999987 36999999999999999986 24556666666664332 33
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChh----------------------
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGRE---------------------- 228 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------------- 228 (267)
+..||+|+++... + ..+...+++++.++|||||++++.++........
T Consensus 114 ~~~fD~v~~~~~l---------~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (227)
T 3e8s_A 114 GKDYDLICANFAL---------L-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMP 183 (227)
T ss_dssp CCCEEEEEEESCC---------C-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEE
T ss_pred CCCccEEEECchh---------h-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccce
Confidence 4469999998432 2 3445699999999999999999987633211100
Q ss_pred -hHHHHHHHHHhCCCCceEEEEEeeecC
Q 041272 229 -ELEAVEAFARSLSVDDWICCKFQMLNR 255 (267)
Q Consensus 229 -~~~~~~~~~~~l~~~~~~~~~~~~~~~ 255 (267)
.......+.+.+...+|.++.......
T Consensus 184 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 211 (227)
T 3e8s_A 184 WYFRTLASWLNALDMAGLRLVSLQEPQH 211 (227)
T ss_dssp EEECCHHHHHHHHHHTTEEEEEEECCCC
T ss_pred EEEecHHHHHHHHHHcCCeEEEEecCCC
Confidence 001234455555567899888766433
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-15 Score=119.28 Aligned_cols=132 Identities=18% Similarity=0.218 Sum_probs=96.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+++ ..+++++.++ ...+
T Consensus 14 ~~~~~~~vLDiG~G~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~---------~~~v~~~~~d------~~~~ 72 (170)
T 3i9f_A 14 FEGKKGVIVDYGCGNGFYCKYLLEFA------TKLYCIDINVIALKEVKEK---------FDSVITLSDP------KEIP 72 (170)
T ss_dssp HSSCCEEEEEETCTTCTTHHHHHTTE------EEEEEECSCHHHHHHHHHH---------CTTSEEESSG------GGSC
T ss_pred CcCCCCeEEEECCCCCHHHHHHHhhc------CeEEEEeCCHHHHHHHHHh---------CCCcEEEeCC------CCCC
Confidence 46788899999999999999999874 5899999999999999987 1467888755 1223
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCCh----hhHHHHHHHHHhCCCCceE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGR----EELEAVEAFARSLSVDDWI 246 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~ 246 (267)
+..||+|+++. +.++.++...+++++.++|||||++++.++....... ........+.+.+. +|+
T Consensus 73 ~~~~D~v~~~~---------~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~ 141 (170)
T 3i9f_A 73 DNSVDFILFAN---------SFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFV 141 (170)
T ss_dssp TTCEEEEEEES---------CSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEE
T ss_pred CCceEEEEEcc---------chhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcE
Confidence 45799999883 4444456789999999999999999998875432111 11111233444444 898
Q ss_pred EEEEeeec
Q 041272 247 CCKFQMLN 254 (267)
Q Consensus 247 ~~~~~~~~ 254 (267)
++......
T Consensus 142 ~~~~~~~~ 149 (170)
T 3i9f_A 142 VEKRFNPT 149 (170)
T ss_dssp EEEEECSS
T ss_pred EEEccCCC
Confidence 88766654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-14 Score=114.56 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=90.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++.++ ..+++++.++..+. .+
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~---~~- 97 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAKR------CKFVYAIDYLDGAIEVTKQNLAKFN----IKNCQIIKGRAEDV---LD- 97 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHTT------SSEEEEEECSHHHHHHHHHHHHHTT----CCSEEEEESCHHHH---GG-
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEECCcccc---cc-
Confidence 4567889999999999999999982 4799999999999999999998877 46799988776552 22
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
+..||+|+++.. .....+++++.++ |||.+++... .......+.+.++...
T Consensus 98 ~~~~D~i~~~~~-------------~~~~~~l~~~~~~--~gG~l~~~~~-----~~~~~~~~~~~l~~~g 148 (183)
T 2yxd_A 98 KLEFNKAFIGGT-------------KNIEKIIEILDKK--KINHIVANTI-----VLENAAKIINEFESRG 148 (183)
T ss_dssp GCCCSEEEECSC-------------SCHHHHHHHHHHT--TCCEEEEEES-----CHHHHHHHHHHHHHTT
T ss_pred CCCCcEEEECCc-------------ccHHHHHHHHhhC--CCCEEEEEec-----ccccHHHHHHHHHHcC
Confidence 247999999843 3346889999888 9999998875 2334444555555544
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.7e-16 Score=129.61 Aligned_cols=138 Identities=15% Similarity=0.170 Sum_probs=100.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC--
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP-- 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-- 169 (267)
+.++.+|||+|||+|..+..+|+.++. +++|+++|+++++++.|+++++..+ ...+++++.++..+......
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~gda~~~l~~~~~~ 131 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPD---DGQVITCDINEGWTKHAHPYWREAK---QEHKIKLRLGPALDTLHSLLNE 131 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCT---TCEEEEEECCCSSCCCSHHHHHHTT---CTTTEEEEESCHHHHHHHHHHH
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHhhc
Confidence 346779999999999999999998753 5899999999999999999999877 44689999988865543221
Q ss_pred -CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec--CC----CCChhhHHHHHHHHHhCCC
Q 041272 170 -KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV--GH----PGGREELEAVEAFARSLSV 242 (267)
Q Consensus 170 -~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~--~~----~~~~~~~~~~~~~~~~l~~ 242 (267)
...+||+|+.+.. ......+++++.++|||||++++.... +. .........+.++.+.+..
T Consensus 132 ~~~~~fD~V~~d~~------------~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~ 199 (242)
T 3r3h_A 132 GGEHQFDFIFIDAD------------KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKN 199 (242)
T ss_dssp HCSSCEEEEEEESC------------GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHT
T ss_pred cCCCCEeEEEEcCC------------hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhh
Confidence 0247999999832 345568999999999999999885432 21 1122233456666665543
Q ss_pred C-ceEE
Q 041272 243 D-DWIC 247 (267)
Q Consensus 243 ~-~~~~ 247 (267)
. .+..
T Consensus 200 ~~~~~~ 205 (242)
T 3r3h_A 200 DSRVFV 205 (242)
T ss_dssp CCSEEE
T ss_pred CCCEEE
Confidence 3 3443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=125.03 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=88.1
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++...+ .+++++.++..++ ..
T Consensus 34 ~~~~~~~~vLDlG~G~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~---~~ 99 (227)
T 1ve3_A 34 KYMKKRGKVLDLACGVGGFSFLLEDYG------FEVVGVDISEDMIRKAREYAKSRE-----SNVEFIVGDARKL---SF 99 (227)
T ss_dssp HSCCSCCEEEEETCTTSHHHHHHHHTT------CEEEEEESCHHHHHHHHHHHHHTT-----CCCEEEECCTTSC---CS
T ss_pred HhcCCCCeEEEEeccCCHHHHHHHHcC------CEEEEEECCHHHHHHHHHHHHhcC-----CCceEEECchhcC---CC
Confidence 345678899999999999999999872 489999999999999999987754 5788888766443 22
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
++.+||+|+++... ..++..+..++++++.++|||||++++...
T Consensus 100 ~~~~~D~v~~~~~~-------~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 100 EDKTFDYVIFIDSI-------VHFEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CTTCEEEEEEESCG-------GGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcEEEEEEcCch-------HhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 34579999998320 034456778999999999999999998765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-16 Score=137.88 Aligned_cols=148 Identities=16% Similarity=0.109 Sum_probs=100.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++.. |+.+|+|+|+|+.+++.|++++..++.. ...+++++..+..+ .. ++.
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~----p~~~V~gvD~s~~al~~Ar~n~~~ngl~-~~~~v~~~~~D~~~---~~-~~~ 291 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKN----PQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALS---GV-EPF 291 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHC----TTCEEEEEESCHHHHHHHHHHHHHHCGG-GGGGEEEEECSTTT---TC-CTT
T ss_pred cCCCeEEEEeCcchHHHHHHHHHC----CCCEEEEEECcHHHHHHHHHHHHHcCCC-cCceEEEEechhhc---cC-CCC
Confidence 456899999999999999999985 3589999999999999999999987710 01257778766543 22 245
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHh----CCCCceEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARS----LSVDDWICC 248 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~ 248 (267)
.||+|++|+++..... .......++++++.++|||||++++++.... +. ...+.+.+.. ....+|.+.
T Consensus 292 ~fD~Ii~nppfh~~~~----~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~--~~--~~~l~~~fg~~~~~a~~~~F~V~ 363 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHA----LTDNVAWEMFHHARRCLKINGELYIVANRHL--DY--FHKLKKIFGNCTTIATNNKFVVL 363 (375)
T ss_dssp CEEEEEECCCC-----------CCHHHHHHHHHHHHEEEEEEEEEEEETTS--CH--HHHHHHHHSCCEEEEECSSEEEE
T ss_pred CeeEEEECCCcccCcc----cCHHHHHHHHHHHHHhCCCCcEEEEEEECCc--CH--HHHHHHhcCCEEEEeeCCCEEEE
Confidence 8999999976532110 1122335789999999999999999876322 11 2333343332 223567877
Q ss_pred EEeeecCCC
Q 041272 249 KFQMLNRPL 257 (267)
Q Consensus 249 ~~~~~~~~~ 257 (267)
+..+.++.+
T Consensus 364 ~~~~~~~~~ 372 (375)
T 4dcm_A 364 KAVKLEHHH 372 (375)
T ss_dssp EEECCC---
T ss_pred EEcCccccc
Confidence 777766543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=119.25 Aligned_cols=109 Identities=11% Similarity=0.032 Sum_probs=84.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~ 170 (267)
++++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++..++ . ++++++++..+... ....
T Consensus 39 ~~~~~~vLD~GcG~G~~~~~l~~~~------~~v~~vD~~~~~~~~a~~~~~~~~----~-~~~~~~~d~~~~~~~~~~~ 107 (171)
T 1ws6_A 39 YPRRGRFLDPFAGSGAVGLEAASEG------WEAVLVEKDPEAVRLLKENVRRTG----L-GARVVALPVEVFLPEAKAQ 107 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTT------CEEEEECCCHHHHHHHHHHHHHHT----C-CCEEECSCHHHHHHHHHHT
T ss_pred ccCCCeEEEeCCCcCHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHHcC----C-ceEEEeccHHHHHHhhhcc
Confidence 4478899999999999999999872 459999999999999999998876 3 88999888776432 2222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHH--hcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE--RILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~ 222 (267)
+.+||+|+++.++. .+ ..++++.+. ++|||||++++.+...
T Consensus 108 ~~~~D~i~~~~~~~--~~---------~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 108 GERFTVAFMAPPYA--MD---------LAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp TCCEEEEEECCCTT--SC---------TTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCceEEEEECCCCc--hh---------HHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 23699999996553 11 124555555 9999999999888743
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-15 Score=126.39 Aligned_cols=134 Identities=18% Similarity=0.204 Sum_probs=98.5
Q ss_pred hhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh
Q 041272 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR 163 (267)
Q Consensus 84 ~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (267)
....+...++++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|++++..++ .. ++++.++..+
T Consensus 110 ~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~------g~~v~gvDi~~~~v~~a~~n~~~~~----~~-v~~~~~d~~~ 178 (254)
T 2nxc_A 110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKL------GGKALGVDIDPMVLPQAEANAKRNG----VR-PRFLEGSLEA 178 (254)
T ss_dssp HHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCGGGHHHHHHHHHHTT----CC-CEEEESCHHH
T ss_pred HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh------CCeEEEEECCHHHHHHHHHHHHHcC----Cc-EEEEECChhh
Confidence 33344444778899999999999999999886 3499999999999999999999877 23 7888766654
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCC
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVD 243 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 243 (267)
. ++ +.+||+|+++.. ......+++++.++|||||+++++.... .....+...++. .
T Consensus 179 ~---~~-~~~fD~Vv~n~~------------~~~~~~~l~~~~~~LkpgG~lils~~~~-----~~~~~v~~~l~~---~ 234 (254)
T 2nxc_A 179 A---LP-FGPFDLLVANLY------------AELHAALAPRYREALVPGGRALLTGILK-----DRAPLVREAMAG---A 234 (254)
T ss_dssp H---GG-GCCEEEEEEECC------------HHHHHHHHHHHHHHEEEEEEEEEEEEEG-----GGHHHHHHHHHH---T
T ss_pred c---Cc-CCCCCEEEECCc------------HHHHHHHHHHHHHHcCCCCEEEEEeecc-----CCHHHHHHHHHH---C
Confidence 2 21 247999999841 1234689999999999999999987632 233444444443 5
Q ss_pred ceEEEEEee
Q 041272 244 DWICCKFQM 252 (267)
Q Consensus 244 ~~~~~~~~~ 252 (267)
+|.+.....
T Consensus 235 Gf~~~~~~~ 243 (254)
T 2nxc_A 235 GFRPLEEAA 243 (254)
T ss_dssp TCEEEEEEE
T ss_pred CCEEEEEec
Confidence 677766544
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-16 Score=129.22 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=68.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-CCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI-VPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~~~ 171 (267)
.++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.+++.|++++..++ . +++++++|..+.... ....
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~----~-~~~~~~~d~~~~~~~~~~~~ 99 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACP----GVSVTAVDLSMDALAVARRNAERFG----A-VVDWAAADGIEWLIERAERG 99 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCT----TEEEEEEECC------------------------CCHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHHhC----C-ceEEEEcchHhhhhhhhhcc
Confidence 6788999999999999999999853 4799999999999999999998866 2 777777655442111 0012
Q ss_pred CcEEEEEEeCCCCCCCCCceeec-----------------hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT-----------------SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~-----------------~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+||+|++|++|.+..+...... ......+++++.++|||||++++...
T Consensus 100 ~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 100 RPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp CCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred CcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 47999999988865543221110 11127889999999999999545444
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.4e-16 Score=127.66 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=87.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccc-cceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK-GLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~~ 172 (267)
++.+|||+|||+|..+..+|+.+++ +++|+++|+++++++.|+++++..+ .. .+++++.++..+....+. +.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~~i~~~~gda~~~l~~~~-~~ 128 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLAD---NTTLTCIDPESEHQRQAKALFREAG---YSPSRVRFLLSRPLDVMSRLA-ND 128 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCT---TSEEEEECSCHHHHHHHHHHHHHTT---CCGGGEEEECSCHHHHGGGSC-TT
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC---CCcCcEEEEEcCHHHHHHHhc-CC
Confidence 3459999999999999999998754 6899999999999999999999877 34 589999988876654332 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+||+|+.+.. ......+++++.++|||||++++..
T Consensus 129 ~fD~V~~d~~------------~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 129 SYQLVFGQVS------------PMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CEEEEEECCC------------TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred CcCeEEEcCc------------HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 7999998832 2344679999999999999998743
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.7e-16 Score=125.45 Aligned_cols=131 Identities=13% Similarity=0.064 Sum_probs=97.3
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. .+++++.++..++. .++..|
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~~---~~~~~f 103 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL------GHQIEGLEPATRLVELARQTH---------PSVTFHHGTITDLS---DSPKRW 103 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT------TCCEEEECCCHHHHHHHHHHC---------TTSEEECCCGGGGG---GSCCCE
T ss_pred CCeEEEecCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHhC---------CCCeEEeCcccccc---cCCCCe
Confidence 789999999999999999987 368999999999999999862 46888887766543 234589
Q ss_pred EEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEecCCCCC----------hhhHHHHHHHHHhCCC
Q 041272 175 RLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYVGHPGG----------REELEAVEAFARSLSV 242 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----------~~~~~~~~~~~~~l~~ 242 (267)
|+|+++. ++++. ++...+++++.++|||||++++.++...... ......+..+++ .
T Consensus 104 D~v~~~~---------~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~ 171 (203)
T 3h2b_A 104 AGLLAWY---------SLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALE---T 171 (203)
T ss_dssp EEEEEES---------SSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHH---H
T ss_pred EEEEehh---------hHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHH---H
Confidence 9999973 22222 4678999999999999999999886443210 012334444444 4
Q ss_pred CceEEEEEeeecC
Q 041272 243 DDWICCKFQMLNR 255 (267)
Q Consensus 243 ~~~~~~~~~~~~~ 255 (267)
.+|+++.......
T Consensus 172 ~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 172 AGFQVTSSHWDPR 184 (203)
T ss_dssp TTEEEEEEEECTT
T ss_pred CCCcEEEEEecCC
Confidence 6799888777655
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-16 Score=131.33 Aligned_cols=102 Identities=11% Similarity=0.079 Sum_probs=84.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++... ++++++++..++ ..+.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~--------~v~~~~~d~~~~----~~~~ 102 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEH------FNDITCVEASEEAISHAQGRLKD--------GITYIHSRFEDA----QLPR 102 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT------CSCEEEEESCHHHHHHHHHHSCS--------CEEEEESCGGGC----CCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHh------CCcEEEEeCCHHHHHHHHHhhhC--------CeEEEEccHHHc----CcCC
Confidence 46779999999999999999987 35899999999999999987532 688888776554 2355
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHH-hcccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE-RILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~-~~LkpgG~l~i~~~~ 221 (267)
+||+|++. .++++.++..++++++. ++|||||++++.++.
T Consensus 103 ~fD~v~~~---------~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~ 143 (250)
T 2p7i_A 103 RYDNIVLT---------HVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 143 (250)
T ss_dssp CEEEEEEE---------SCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cccEEEEh---------hHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 89999998 45666667789999999 999999999998864
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-15 Score=123.55 Aligned_cols=115 Identities=16% Similarity=0.105 Sum_probs=88.1
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
....++.....++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+ .++.++.++..
T Consensus 26 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~------~~~~~~~D~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~ 94 (246)
T 1y8c_A 26 FIIEKCVENNLVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENKFRSQG-----LKPRLACQDIS 94 (246)
T ss_dssp HHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHHHHHTT-----CCCEEECCCGG
T ss_pred HHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC------CCcEEEEECCHHHHHHHHHHHhhcC-----CCeEEEecccc
Confidence 333333333347789999999999999999987 3689999999999999999988755 27888886664
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeech---hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTS---ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
++. .+ ..||+|+++.. ++++. ++..++++++.++|||||++++...
T Consensus 95 ~~~---~~-~~fD~v~~~~~--------~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 95 NLN---IN-RKFDLITCCLD--------STNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GCC---CS-CCEEEEEECTT--------GGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCC---cc-CCceEEEEcCc--------cccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 432 22 57999998720 33322 6778999999999999999998554
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=130.29 Aligned_cols=109 Identities=21% Similarity=0.317 Sum_probs=91.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..+++.. |+.+|+|+|+|+.+++.|++++...+ ..+++++..+..++ ..++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~---~~~~ 103 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNN----PDAEITSIDISPESLEKARENTEKNG----IKNVKFLQANIFSL---PFED 103 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHC----TTSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGC---CSCT
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEcccccC---CCCC
Confidence 4688999999999999999999984 35899999999999999999998876 46799988766543 3345
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+||+|+++ .++++.++...+++++.++|||||++++.+.
T Consensus 104 ~~fD~v~~~---------~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 104 SSFDHIFVC---------FVLEHLQSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp TCEEEEEEE---------SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEEe---------chhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 689999998 3555556667999999999999999999764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=129.18 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=82.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh----------cccc---ccccceEEEec
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK----------TTSK---AEKGLVKLFNM 159 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~----------~~~~---~~~~~v~~~~~ 159 (267)
.++.+|||+|||+|..+..||+. +.+|+|||+|+.|++.|+++... .+.. ....+++++++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 140 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR------GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCC 140 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEEC
Confidence 57889999999999999999987 46999999999999999876541 0000 01257899988
Q ss_pred ChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 160 CHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 160 ~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|..++... ...+||+|+....+.. ...+....+++++.++|||||++++++.
T Consensus 141 D~~~l~~~--~~~~FD~V~~~~~l~~-------l~~~~~~~~l~~~~~~LkpGG~l~l~~~ 192 (252)
T 2gb4_A 141 SIFDLPRA--NIGKFDRIWDRGALVA-------INPGDHDRYADIILSLLRKEFQYLVAVL 192 (252)
T ss_dssp CTTTGGGG--CCCCEEEEEESSSTTT-------SCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccCCcc--cCCCEEEEEEhhhhhh-------CCHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence 77665432 1247999997632100 1234567899999999999999976543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-15 Score=123.29 Aligned_cols=103 Identities=13% Similarity=0.055 Sum_probs=82.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|++++...+ ..+++++.++..+. ...
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~la~~------~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~---~~~ 140 (210)
T 3lbf_A 74 ELTPQSRVLEIGTGSGYQTAILAHL------VQHVCSVERIKGLQWQARRRLKNLD----LHNVSTRHGDGWQG---WQA 140 (210)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGC---CGG
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEecCHHHHHHHHHHHHHcC----CCceEEEECCcccC---Ccc
Confidence 4678899999999999999999998 3799999999999999999998877 45799988766442 223
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+..||+|+++... ++. .+++.++|||||++++....
T Consensus 141 ~~~~D~i~~~~~~---------~~~------~~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 RAPFDAIIVTAAP---------PEI------PTALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCEEEEEESSBC---------SSC------CTHHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEEccch---------hhh------hHHHHHhcccCcEEEEEEcC
Confidence 4579999997321 111 12578999999999998764
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=125.29 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=88.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC--
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK-- 170 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~-- 170 (267)
.++.+|||+|||+|..+..+|+.++. +++|+++|+++.+++.|+++++..+ ...+++++.++..+.......
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~ 130 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQP---GARLLTMEINPDCAAITQQMLNFAG---LQDKVTILNGASQDLIPQLKKKY 130 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCT---TCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHGGGTTTTS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCC---CCEEEEEeCChHHHHHHHHHHHHcC---CCCceEEEECCHHHHHHHHHHhc
Confidence 46789999999999999999997653 5899999999999999999999877 456799999887665443321
Q ss_pred -CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 -STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 -~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...||+|+.+. ..+......++++.+ ++|||||++++...
T Consensus 131 ~~~~fD~V~~d~---------~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 131 DVDTLDMVFLDH---------WKDRYLPDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp CCCCCSEEEECS---------CGGGHHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred CCCceEEEEEcC---------CcccchHHHHHHHhc-cccCCCeEEEEeCC
Confidence 14799999883 223344445677777 99999999987655
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=117.02 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=87.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccc--eEEEecChhhhhhcCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL--VKLFNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~~~ 169 (267)
+.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|++++...+ ..+ ++++.++..+. ..
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~~~~~------~~~v~~~D~~~~~~~~a~~~~~~~~----~~~~~~~~~~~d~~~~---~~ 116 (194)
T 1dus_A 50 VDKDDDILDLGCGYGVIGIALADE------VKSTTMADINRRAIKLAKENIKLNN----LDNYDIRVVHSDLYEN---VK 116 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHTT----CTTSCEEEEECSTTTT---CT
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHHHcC----CCccceEEEECchhcc---cc
Confidence 457889999999999999999987 3799999999999999999998866 344 88888665432 22
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+..||+|+++.++. +.......+++++.++|||||++++.+..
T Consensus 117 -~~~~D~v~~~~~~~--------~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 117 -DRKYNKIITNPPIR--------AGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp -TSCEEEEEECCCST--------TCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred -cCCceEEEECCCcc--------cchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 45799999985331 12456678999999999999999998874
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-16 Score=130.61 Aligned_cols=117 Identities=9% Similarity=0.046 Sum_probs=84.8
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC-hHHHHHH---HHHHhhccccccccceEEEecChhhh
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ-SEALKST---SSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s-~~~i~~a---~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
....+++.+|||||||+|.++..+++.. |+.+|+|||+| +.|++.| ++++.+.+ ..++.+++++..++
T Consensus 19 ~~~~~~~~~vLDiGCG~G~~~~~la~~~----~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~----~~~v~~~~~d~~~l 90 (225)
T 3p2e_A 19 EIIGQFDRVHIDLGTGDGRNIYKLAIND----QNTFYIGIDPVKENLFDISKKIIKKPSKGG----LSNVVFVIAAAESL 90 (225)
T ss_dssp HHHTTCSEEEEEETCTTSHHHHHHHHTC----TTEEEEEECSCCGGGHHHHHHHTSCGGGTC----CSSEEEECCBTTBC
T ss_pred HHhCCCCCEEEEEeccCcHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHHHHHcC----CCCeEEEEcCHHHh
Confidence 3345688899999999999999999763 36899999999 6777666 88877766 56899998887776
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..... ..+|.+.+++++ .. ...+.......+++++.++|||||++++..
T Consensus 91 ~~~~~--d~v~~i~~~~~~---~~-~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 91 PFELK--NIADSISILFPW---GT-LLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp CGGGT--TCEEEEEEESCC---HH-HHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhcc--CeEEEEEEeCCC---cH-HhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 43222 368888887532 10 001111223578999999999999999833
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=129.54 Aligned_cols=141 Identities=11% Similarity=0.105 Sum_probs=101.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-C
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-P 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~ 169 (267)
.++++.+|||+|||+|..+..+++.++. .++|+|+|+++.+++.++++++..+ ..+++++.+|..++.... .
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~---~~~v~avD~~~~~l~~~~~~~~~~g----~~~v~~~~~D~~~~~~~~~~ 152 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKN---KGTIVAVEISKTRTKALKSNINRMG----VLNTIIINADMRKYKDYLLK 152 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTT---CSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCHHHHHHHHHH
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCC---CCEEEEECCCHHHHHHHHHHHHHhC----CCcEEEEeCChHhcchhhhh
Confidence 3568899999999999999999997642 3799999999999999999999877 458999998877664321 0
Q ss_pred CCCcEEEEEEeCCCCCCCC---------CceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhC
Q 041272 170 KSTAVRLVAFNLGYLPGGD---------KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d---------~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l 240 (267)
....||.|++++++....- ..+........++++++.++|||||+++++++.-+.. +....+..+++..
T Consensus 153 ~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~--ene~~v~~~l~~~ 230 (274)
T 3ajd_A 153 NEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE--ENEEVIKYILQKR 230 (274)
T ss_dssp TTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT--SSHHHHHHHHHHC
T ss_pred ccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH--HhHHHHHHHHHhC
Confidence 1347999999976532110 0001112445789999999999999999887643332 2234556666543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-15 Score=123.79 Aligned_cols=106 Identities=13% Similarity=0.069 Sum_probs=85.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++... .++++++++..++ ..++
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~---~~~~ 156 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKL-----YATTDLLEPVKHMLEEAKRELAGM------PVGKFILASMETA---TLPP 156 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHH-----CSEEEEEESCHHHHHHHHHHTTTS------SEEEEEESCGGGC---CCCS
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhh-----cCEEEEEeCCHHHHHHHHHHhccC------CceEEEEccHHHC---CCCC
Confidence 4578899999999999999999874 258999999999999999987652 4788888766543 3344
Q ss_pred CcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|++.. ++++. ++...+++++.++|||||++++.++
T Consensus 157 ~~fD~v~~~~---------~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 157 NTYDLIVIQW---------TAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp SCEEEEEEES---------CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeEEEEEcc---------hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 5899999883 44433 5678999999999999999999885
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-15 Score=120.94 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=86.5
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|++++...+ ..+++++..+..++. . +
T Consensus 30 ~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~---~-~ 95 (199)
T 2xvm_A 30 VVKPGKTLDLGCGNGRNSLYLAAN------GYDVDAWDKNAMSIANVERIKSIEN----LDNLHTRVVDLNNLT---F-D 95 (199)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEECCGGGCC---C-C
T ss_pred ccCCCeEEEEcCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHhCC----CCCcEEEEcchhhCC---C-C
Confidence 346789999999999999999987 3699999999999999999998766 357888887665432 2 4
Q ss_pred CcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..||+|+++. +.++ .++...+++++.++|||||++++....
T Consensus 96 ~~~D~v~~~~---------~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (199)
T 2xvm_A 96 RQYDFILSTV---------VLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 138 (199)
T ss_dssp CCEEEEEEES---------CGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CCceEEEEcc---------hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEee
Confidence 5799999883 2332 346789999999999999998887653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.2e-15 Score=120.84 Aligned_cols=104 Identities=22% Similarity=0.227 Sum_probs=82.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++ ++.++.++..++. .
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~d~~~~~----~ 99 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA------GFDVDATDGSPELAAEASRRL----------GRPVRTMLFHQLD----A 99 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH----------TSCCEECCGGGCC----C
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc------CCeEEEECCCHHHHHHHHHhc----------CCceEEeeeccCC----C
Confidence 3567889999999999999999987 369999999999999999876 2344554544333 4
Q ss_pred CCcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
+..||+|+++. ++++. ++...+++++.++|||||++++......
T Consensus 100 ~~~fD~v~~~~---------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 145 (211)
T 3e23_A 100 IDAYDAVWAHA---------CLLHVPRDELADVLKLIWRALKPGGLFYASYKSGE 145 (211)
T ss_dssp CSCEEEEEECS---------CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCS
T ss_pred CCcEEEEEecC---------chhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCC
Confidence 56899999983 33333 4778999999999999999999876543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-15 Score=123.35 Aligned_cols=104 Identities=17% Similarity=0.158 Sum_probs=84.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++ .+ ..+++++.++..++ ..+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~----~~----~~~~~~~~~d~~~~----~~~ 105 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL------ADRVTALDGSAEMIAEAGR----HG----LDNVEFRQQDLFDW----TPD 105 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHGG----GC----CTTEEEEECCTTSC----CCS
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHh----cC----CCCeEEEecccccC----CCC
Confidence 567789999999999999999988 3799999999999999988 22 36789988776544 335
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhh--HHHHHHHHHhcccCCcEEEEEEecC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSET--TKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..||+|+++. ++++.++ ...+++++.++|||||++++.++..
T Consensus 106 ~~~D~v~~~~---------~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 106 RQWDAVFFAH---------WLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp SCEEEEEEES---------CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CceeEEEEec---------hhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 5899999983 4443333 4899999999999999999987643
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-15 Score=125.49 Aligned_cols=126 Identities=18% Similarity=0.137 Sum_probs=95.6
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-cccccccceEEEecChhhhhhcC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-TSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..+.++.+|||+|||+|.++..+++.+++ +.+|+++|+++.+++.|+++++.+ + ..+++++..+..+. .
T Consensus 92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~g----~~~v~~~~~d~~~~---~ 161 (258)
T 2pwy_A 92 LDLAPGMRVLEAGTGSGGLTLFLARAVGE---KGLVESYEARPHHLAQAERNVRAFWQ----VENVRFHLGKLEEA---E 161 (258)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCT---TSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEESCGGGC---C
T ss_pred cCCCCCCEEEEECCCcCHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHhcC----CCCEEEEECchhhc---C
Confidence 35678999999999999999999998653 579999999999999999999876 5 46788888766443 1
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWIC 247 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (267)
.++..||+|+++++ +...+++++.++|||||++++.+.. . ....+..+.+...+|..
T Consensus 162 ~~~~~~D~v~~~~~--------------~~~~~l~~~~~~L~~gG~l~~~~~~-----~---~~~~~~~~~l~~~gf~~ 218 (258)
T 2pwy_A 162 LEEAAYDGVALDLM--------------EPWKVLEKAALALKPDRFLVAYLPN-----I---TQVLELVRAAEAHPFRL 218 (258)
T ss_dssp CCTTCEEEEEEESS--------------CGGGGHHHHHHHEEEEEEEEEEESC-----H---HHHHHHHHHHTTTTEEE
T ss_pred CCCCCcCEEEECCc--------------CHHHHHHHHHHhCCCCCEEEEEeCC-----H---HHHHHHHHHHHHCCCce
Confidence 23347999999842 2247899999999999999988752 1 23334444444556644
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=129.11 Aligned_cols=127 Identities=14% Similarity=0.153 Sum_probs=97.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-cccccccceEEEecChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-TSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
.+.++.+|||+|||+|.++..+++.+++ +.+|+|+|+++.+++.|+++++.+ + ..+++++.++..+ ..
T Consensus 107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~g----~~~v~~~~~d~~~---~~- 175 (275)
T 1yb2_A 107 GLRPGMDILEVGVGSGNMSSYILYALNG---KGTLTVVERDEDNLKKAMDNLSEFYD----IGNVRTSRSDIAD---FI- 175 (275)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTT---SSEEEEECSCHHHHHHHHHHHHTTSC----CTTEEEECSCTTT---CC-
T ss_pred CCCCcCEEEEecCCCCHHHHHHHHHcCC---CCEEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECchhc---cC-
Confidence 4678899999999999999999997532 589999999999999999999886 5 4678998876644 22
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
++..||+|+++++ +..++++++.++|||||++++.+.. . .......+.+...+|..+.
T Consensus 176 ~~~~fD~Vi~~~~--------------~~~~~l~~~~~~LkpgG~l~i~~~~-----~---~~~~~~~~~l~~~Gf~~~~ 233 (275)
T 1yb2_A 176 SDQMYDAVIADIP--------------DPWNHVQKIASMMKPGSVATFYLPN-----F---DQSEKTVLSLSASGMHHLE 233 (275)
T ss_dssp CSCCEEEEEECCS--------------CGGGSHHHHHHTEEEEEEEEEEESS-----H---HHHHHHHHHSGGGTEEEEE
T ss_pred cCCCccEEEEcCc--------------CHHHHHHHHHHHcCCCCEEEEEeCC-----H---HHHHHHHHHHHHCCCeEEE
Confidence 2347999999732 2247899999999999999998762 1 2334455555556676554
Q ss_pred E
Q 041272 250 F 250 (267)
Q Consensus 250 ~ 250 (267)
.
T Consensus 234 ~ 234 (275)
T 1yb2_A 234 T 234 (275)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=124.74 Aligned_cols=104 Identities=12% Similarity=0.123 Sum_probs=84.6
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++... .++++++++..++. .+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~~----~~ 112 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPH------CKRLTVIDVMPRAIGRACQRTKRW------SHISWAATDILQFS----TA 112 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGG------EEEEEEEESCHHHHHHHHHHTTTC------SSEEEEECCTTTCC----CS
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHhcccC------CCeEEEEcchhhCC----CC
Confidence 446789999999999999999987 369999999999999999988763 47899887765544 34
Q ss_pred CcEEEEEEeCCCCCCCCCceeech---hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTS---ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+||+|+++. ++++. +...++++++.++|||||++++.+.
T Consensus 113 ~~fD~v~~~~---------~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 113 ELFDLIVVAE---------VLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp CCEEEEEEES---------CGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCccEEEEcc---------HHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 5899999983 33332 3446889999999999999998775
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.9e-16 Score=131.70 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=90.5
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..+++.++. +.+|+|+|+|+.+++.|++++...+ .+++++.++..++. . +
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~-----~~v~~~~~d~~~~~---~-~ 87 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPE---GSKYTGIDSGETLLAEARELFRLLP-----YDSEFLEGDATEIE---L-N 87 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCT---TCEEEEEESCHHHHHHHHHHHHSSS-----SEEEEEESCTTTCC---C-S
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHhcC-----CceEEEEcchhhcC---c-C
Confidence 567889999999999999999998643 4799999999999999999988755 48999987765432 2 3
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+||+|+++. ++++.++..++++++.++|||||++++.+..
T Consensus 88 ~~fD~v~~~~---------~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 88 DKYDIAICHA---------FLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SCEEEEEEES---------CGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCeeEEEECC---------hhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 4899999983 4555566789999999999999999988764
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-16 Score=131.75 Aligned_cols=147 Identities=16% Similarity=0.108 Sum_probs=94.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccc---------------------
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA--------------------- 149 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~--------------------- 149 (267)
...++.+|||||||+|.++..++... ..+|+|+|+|+.|++.|+++++......
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~-----~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~ 126 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDS-----FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEE 126 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGT-----EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhh-----hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhh
Confidence 34578899999999998887776541 2479999999999999999875531000
Q ss_pred ----cccceE-EEecChhhhhhcC-CCCCcEEEEEEeCCCCCCCCCceeec----hhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 150 ----EKGLVK-LFNMCHSRMEEIV-PKSTAVRLVAFNLGYLPGGDKSVITT----SETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 150 ----~~~~v~-~~~~~~~~l~~~~-~~~~~~d~ii~~~~~lp~~d~~~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...++. ++.+|..+..... ....+||+|+++. ++++ .++..+++++++++|||||+|+++.
T Consensus 127 ~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~---------~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 127 KEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLL---------AMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp HHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES---------CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehH---------HHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 011233 6665554321111 1234799999984 3332 3567899999999999999999987
Q ss_pred ecCCCC---C-------hhhHHHHHHHHHhCCCCceEEEEEeeec
Q 041272 220 YVGHPG---G-------REELEAVEAFARSLSVDDWICCKFQMLN 254 (267)
Q Consensus 220 ~~~~~~---~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (267)
...... + .-..+.+. +.+...+|.++....+.
T Consensus 198 ~~~~~~~~~g~~~~~~~~~~~~~l~---~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 198 TLRLPSYMVGKREFSCVALEKGEVE---QAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp ESSCCEEEETTEEEECCCCCHHHHH---HHHHHTTEEEEEEEEEC
T ss_pred eecCccceeCCeEeeccccCHHHHH---HHHHHCCCEEEEEeecc
Confidence 532210 0 00122333 33444678887766543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-15 Score=125.35 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=87.8
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+.++.+|||+|||+|.++..+++.+++ +.+|+|+|+++++++.|+++++..+ ...+++++.++..+. .
T Consensus 89 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~- 158 (255)
T 3mb5_A 89 AGISPGDFIVEAGVGSGALTLFLANIVGP---EGRVVSYEIREDFAKLAWENIKWAG---FDDRVTIKLKDIYEG---I- 158 (255)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCT---TSEEEEECSCHHHHHHHHHHHHHHT---CTTTEEEECSCGGGC---C-
T ss_pred hCCCCCCEEEEecCCchHHHHHHHHHhCC---CeEEEEEecCHHHHHHHHHHHHHcC---CCCceEEEECchhhc---c-
Confidence 35678999999999999999999998653 5899999999999999999998877 344599998776532 2
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
++.+||+|+++++ ....+++++.++|||||++++...
T Consensus 159 ~~~~~D~v~~~~~--------------~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 159 EEENVDHVILDLP--------------QPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp CCCSEEEEEECSS--------------CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCcCEEEECCC--------------CHHHHHHHHHHHcCCCCEEEEEEC
Confidence 2347999999843 224789999999999999988765
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-15 Score=129.52 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=88.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.++..+++. + +.+|+|+|+|+.+++.|++|++.++ ...++++++++..+... ..
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~----~~~v~~vDis~~al~~A~~n~~~~~---l~~~v~~~~~D~~~~~~-----~~ 189 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-S----DAIVFATDVSSKAVEIARKNAERHG---VSDRFFVRKGEFLEPFK-----EK 189 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-S----SCEEEEEESCHHHHHHHHHHHHHTT---CTTSEEEEESSTTGGGG-----GG
T ss_pred CCCEEEEEeCchhHHHHHHHHC-C----CCEEEEEECCHHHHHHHHHHHHHcC---CCCceEEEECcchhhcc-----cc
Confidence 6679999999999999999988 4 4899999999999999999999877 33469999877654321 25
Q ss_pred E---EEEEEeCCCCCCCC---Cceeechh-------hHHHHHHHHH-hcccCCcEEEEEE
Q 041272 174 V---RLVAFNLGYLPGGD---KSVITTSE-------TTKMALEAAE-RILIPGGLISMVV 219 (267)
Q Consensus 174 ~---d~ii~~~~~lp~~d---~~~~~~~~-------~~~~~l~~~~-~~LkpgG~l~i~~ 219 (267)
| |+|++|++|++..+ ..+.+.+. +...+++++. +.|+|||++++..
T Consensus 190 f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 190 FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred cCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 7 99999999987653 11112221 1237899999 9999999998754
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=130.63 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=89.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++..+ .+|+|+|+|+++++.|++++...+ ...+++++.++..++.
T Consensus 87 ~~~~~~~vLDiGcG~G~~~~~la~~~~-----~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~----- 153 (318)
T 2fk8_A 87 DLKPGMTLLDIGCGWGTTMRRAVERFD-----VNVIGLTLSKNQHARCEQVLASID---TNRSRQVLLQGWEDFA----- 153 (318)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHHC-----CEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCGGGCC-----
T ss_pred CCCCcCEEEEEcccchHHHHHHHHHCC-----CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChHHCC-----
Confidence 456889999999999999999998863 699999999999999999998866 3457899887765442
Q ss_pred CCcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..||+|++.. ++++. ++...+++++.++|||||++++.++..
T Consensus 154 -~~fD~v~~~~---------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 154 -EPVDRIVSIE---------AFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp -CCCSEEEEES---------CGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred -CCcCEEEEeC---------hHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4799999883 33333 677899999999999999999988754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=124.03 Aligned_cols=113 Identities=15% Similarity=0.113 Sum_probs=85.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-ccccceEEEecChhhhhhcCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-AEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|++++...+.. ....++++++++.... ...
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~ 99 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSF----FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ---DKR 99 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTT----CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC---CGG
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCC----CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc---ccc
Confidence 35778999999999999999998743 379999999999999999998776510 0012799988765322 222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechh--hHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSE--TTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+||+|+++ .++++.+ ...++++++.++|||||+++++..
T Consensus 100 ~~~fD~v~~~---------~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 100 FHGYDAATVI---------EVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp GCSCSEEEEE---------SCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred CCCcCEEeeH---------HHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 3479999988 3444333 448999999999999997776654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.5e-15 Score=130.52 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=94.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccccc-ceEEEecChhhhhhcC-CC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG-LVKLFNMCHSRMEEIV-PK 170 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~-~v~~~~~~~~~l~~~~-~~ 170 (267)
.++.+|||+|||+|.+++.+++. +.+|++||+|+.+++.|++|++.++ ... +++++++|..++.... ..
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~------ga~V~~VD~s~~al~~a~~n~~~~g---l~~~~v~~i~~D~~~~l~~~~~~ 222 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKENQVLAG---LEQAPIRWICEDAMKFIQREERR 222 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHT---CTTSCEEEECSCHHHHHHHHHHH
T ss_pred CCCCcEEEcccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcC---CCccceEEEECcHHHHHHHHHhc
Confidence 46789999999999999999986 3599999999999999999999877 222 4899998877654321 11
Q ss_pred CCcEEEEEEeCCCCCCC-CCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 171 STAVRLVAFNLGYLPGG-DKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~-d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
+..||+|++|+++.... ...+.........+++++.++|||||++++.+.....
T Consensus 223 ~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~ 277 (332)
T 2igt_A 223 GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIR 277 (332)
T ss_dssp TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTT
T ss_pred CCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCC
Confidence 24799999998753322 2223445667789999999999999998877765443
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=123.55 Aligned_cols=111 Identities=12% Similarity=0.154 Sum_probs=88.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-CC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-PK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~~ 170 (267)
+.++.+|||+|||+|..+..+++.++. +++|+++|+++.+++.|++++...+ ...+++++.++..+..... ..
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~ 129 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSS---GGRVVTLEASEKHADIARSNIERAN---LNDRVEVRTGLALDSLQQIENE 129 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCS---SCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHT
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhc
Confidence 356789999999999999999998753 5899999999999999999998877 3457999998876543321 11
Q ss_pred -CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 -STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 -~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...||+|+.+.. ......+++++.++|||||++++...
T Consensus 130 ~~~~fD~v~~d~~------------~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 130 KYEPFDFIFIDAD------------KQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp TCCCCSEEEECSC------------GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred CCCCcCEEEEcCC------------cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 136999998832 23456899999999999998887543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-15 Score=120.62 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=86.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++ +|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+ .++.++..+..++ ..++
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~---~~~~ 92 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL------GYEVTAVDQSSVGLAKAKQLAQEKG-----VKITTVQSNLADF---DIVA 92 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT------TCEEEEECSSHHHHHHHHHHHHHHT-----CCEEEECCBTTTB---SCCT
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC------CCeEEEEECCHHHHHHHHHHHHhcC-----CceEEEEcChhhc---CCCc
Confidence 5667 9999999999999999986 3699999999999999999998765 3788887665443 2334
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..||+|++++.+ ........+++++.++|||||++++.++.
T Consensus 93 ~~fD~v~~~~~~---------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 93 DAWEGIVSIFCH---------LPSSLRQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp TTCSEEEEECCC---------CCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred CCccEEEEEhhc---------CCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 579999987422 23456789999999999999999998864
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=123.17 Aligned_cols=110 Identities=14% Similarity=0.104 Sum_probs=86.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccc-cceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK-GLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~~ 172 (267)
++.+|||+|||+|.++..++... ..+|+|+|+|++|++.|+++++.++ .. .++++++++..++.... .+.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~v~~~~~d~~~~~~~~-~~~ 123 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-----AKKVTFLELDKTVANQLKKNLQTLK---CSSEQAEVINQSSLDFLKQP-QNQ 123 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-----CSEEEEECSCHHHHHHHHHHHHHTT---CCTTTEEEECSCHHHHTTSC-CSS
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-----CCEEEEEECCHHHHHHHHHHHHHhC---CCccceEEEECCHHHHHHhh-ccC
Confidence 67899999999999999877662 2589999999999999999998877 21 58999988776553322 134
Q ss_pred c-EEEEEEeCCCCCCCCCceeechhhHHHHHHHH--HhcccCCcEEEEEEecC
Q 041272 173 A-VRLVAFNLGYLPGGDKSVITTSETTKMALEAA--ERILIPGGLISMVVYVG 222 (267)
Q Consensus 173 ~-~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~~ 222 (267)
+ ||+|++++++. ......+++.+ .++|||||++++.+...
T Consensus 124 ~~fD~I~~~~~~~----------~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 124 PHFDVVFLDPPFH----------FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCEEEEEECCCSS----------SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCEEEECCCCC----------CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 7 99999996531 13345778888 67899999999988743
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-15 Score=128.59 Aligned_cols=137 Identities=17% Similarity=0.245 Sum_probs=98.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|..+..+++.++. .++|+|+|+|+.+++.+++++++.+ ..++++++++..++...
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~---~~~v~avD~s~~~l~~a~~~~~~~g----~~~v~~~~~D~~~~~~~--- 184 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRN---DGVIYAFDVDENRLRETRLNLSRLG----VLNVILFHSSSLHIGEL--- 184 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTT---CSEEEEECSCHHHHHHHHHHHHHHT----CCSEEEESSCGGGGGGG---
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEEcCCHHHHHHHHHHHHHhC----CCeEEEEECChhhcccc---
Confidence 4678899999999999999999998643 4799999999999999999999887 45799998887665442
Q ss_pred CCcEEEEEEeCCC-----CCCCCCceee--------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGY-----LPGGDKSVIT--------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~-----lp~~d~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
...||.|+++++. +......... ......++++++.++|||||+++++++.-++ .+....+..++
T Consensus 185 ~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~--~Ene~~v~~~l 262 (315)
T 1ixk_A 185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP--EENEFVIQWAL 262 (315)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG--GGTHHHHHHHH
T ss_pred cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh--HHhHHHHHHHH
Confidence 3479999998653 2111000000 1122368999999999999999987763322 22334455666
Q ss_pred Hh
Q 041272 238 RS 239 (267)
Q Consensus 238 ~~ 239 (267)
+.
T Consensus 263 ~~ 264 (315)
T 1ixk_A 263 DN 264 (315)
T ss_dssp HH
T ss_pred hc
Confidence 65
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-14 Score=129.31 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=110.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..+++.+|||+|||+|.+++.++...++ +.+|+|+|+++.+++.|++|++..+ ..+++++++|..++...
T Consensus 200 ~~~~~~~vLD~gcGsG~~~ie~a~~~~~---~~~v~g~Di~~~~i~~a~~n~~~~g----~~~i~~~~~D~~~~~~~--- 269 (354)
T 3tma_A 200 DARPGMRVLDPFTGSGTIALEAASTLGP---TSPVYAGDLDEKRLGLAREAALASG----LSWIRFLRADARHLPRF--- 269 (354)
T ss_dssp TCCTTCCEEESSCTTSHHHHHHHHHHCT---TSCEEEEESCHHHHHHHHHHHHHTT----CTTCEEEECCGGGGGGT---
T ss_pred CCCCCCEEEeCCCCcCHHHHHHHHhhCC---CceEEEEECCHHHHHHHHHHHHHcC----CCceEEEeCChhhCccc---
Confidence 4567889999999999999999998632 4799999999999999999999987 34899999887665432
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF 250 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (267)
...||+|++|++|-.... ........+..+++++.++|||||.+++.+.. ......+. . .++...+.
T Consensus 270 ~~~~D~Ii~npPyg~r~~-~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~--------~~~~~~~~---~-~g~~~~~~ 336 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLG-RKEGLFHLYWDFLRGALALLPPGGRVALLTLR--------PALLKRAL---P-PGFALRHA 336 (354)
T ss_dssp CCCCSEEEECCCSCC-----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC--------HHHHHHHC---C-TTEEEEEE
T ss_pred cCCCCEEEECCCCcCccC-CcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC--------HHHHHHHh---h-cCcEEEEE
Confidence 235799999987621110 00112344578999999999999999988761 12222222 2 56777666
Q ss_pred eeecC-CCCceEEEeec
Q 041272 251 QMLNR-PLAPVLVFLFK 266 (267)
Q Consensus 251 ~~~~~-~~~p~~~~~~k 266 (267)
..+.. ...+.++++.|
T Consensus 337 ~~l~~g~l~~~i~vl~r 353 (354)
T 3tma_A 337 RVVEQGGVYPRVFVLEK 353 (354)
T ss_dssp EECCBTTBCCEEEEEEE
T ss_pred EEEEeCCEEEEEEEEEc
Confidence 66544 45667777765
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-15 Score=132.63 Aligned_cols=146 Identities=16% Similarity=0.105 Sum_probs=107.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-CCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-PKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~~~~ 172 (267)
++.+|||+|||+|.++..+|+. ..+|+|+|+|+.+++.|++|++.++ ..+++++.++..++.... ..+.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~n~~~n~----~~~~~~~~~d~~~~~~~~~~~~~ 278 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEENARLNG----LGNVRVLEANAFDLLRRLEKEGE 278 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHHHHHHTT----CTTEEEEESCHHHHHHHHHHTTC
T ss_pred CCCeEEEeeeccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHHHcC----CCCceEEECCHHHHHHHHHhcCC
Confidence 7889999999999999999987 2789999999999999999999987 456999998887654321 1234
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF 250 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (267)
.||+|++|+++.......+........+++.++.++|+|||+++++++............+.+.+.... ..++++..
T Consensus 279 ~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g-~~~~~i~~ 355 (382)
T 1wxx_A 279 RFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAH-RLLRVVEK 355 (382)
T ss_dssp CEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEEE
T ss_pred CeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEc
Confidence 799999998776554444444456678899999999999999999887554422212333444444332 23555543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-15 Score=133.44 Aligned_cols=126 Identities=16% Similarity=0.101 Sum_probs=99.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-CC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI-VP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~ 169 (267)
..+++.+|||+|||+|.++..+|+. + ..+|+|+|+|+.+++.|++|++.++ ...+++++.++..++... ..
T Consensus 214 ~~~~~~~VLDl~~G~G~~~~~la~~-g----~~~v~~vD~s~~~l~~a~~n~~~n~---~~~~v~~~~~d~~~~~~~~~~ 285 (396)
T 2as0_A 214 WVQPGDRVLDVFTYTGGFAIHAAIA-G----ADEVIGIDKSPRAIETAKENAKLNG---VEDRMKFIVGSAFEEMEKLQK 285 (396)
T ss_dssp GCCTTCEEEETTCTTTHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHH
T ss_pred HhhCCCeEEEecCCCCHHHHHHHHC-C----CCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEECCHHHHHHHHHh
Confidence 3457889999999999999999986 2 3699999999999999999999887 334899999887765432 21
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
++..||+|++|+++.......+.........++.++.++|+|||+++++++..+.
T Consensus 286 ~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 340 (396)
T 2as0_A 286 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV 340 (396)
T ss_dssp TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS
T ss_pred hCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCC
Confidence 2347999999987755444344444566788999999999999999888875444
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=129.57 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=87.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...+......++.+..++..++......+.
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 129 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGD 129 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTT
T ss_pred cCCCEEEEecCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCC
Confidence 56789999999999999999987 369999999999999999987543321224577888877766543223456
Q ss_pred cEEEEEEe-C--CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFN-L--GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~-~--~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+||+|++. . ++++... .......++++++.++|||||++++...
T Consensus 130 ~fD~V~~~g~~l~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 130 GFDAVICLGNSFAHLPDSK----GDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CEEEEEECTTCGGGSCCSS----SSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CeEEEEEcChHHhhcCccc----cCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 89999985 2 1122100 0124478999999999999999998765
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=129.38 Aligned_cols=148 Identities=11% Similarity=0.026 Sum_probs=108.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccc-ccceEEEecChhhhhhc-CCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE-KGLVKLFNMCHSRMEEI-VPK 170 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~-~~~ 170 (267)
.++.+|||+|||+|.+++.+|+.. ..+|+|+|+|+.+++.|++|++.++ . ..+++++.+|..++... ...
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-----~~~V~~vD~s~~al~~a~~n~~~ng---l~~~~v~~~~~D~~~~~~~~~~~ 290 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-----CSQVVSVDTSQEALDIARQNVELNK---LDLSKAEFVRDDVFKLLRTYRDR 290 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHTT---CCGGGEEEEESCHHHHHHHHHHT
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHHHHcC---CCccceEEEECCHHHHHHHHHhc
Confidence 578899999999999999999862 2699999999999999999999887 3 23899999888765432 212
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
+..||+|++|+++.......+........+++.++.++|+|||+++++++.......+....+.+.+.... ..++++.
T Consensus 291 ~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g-~~~~~i~ 368 (396)
T 3c0k_A 291 GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAG-RDVQFIE 368 (396)
T ss_dssp TCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHT-CCEEEEE
T ss_pred CCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcC-CeEEEEE
Confidence 34799999998876555444444556778999999999999999999887654432222333333443332 2355444
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=131.97 Aligned_cols=114 Identities=21% Similarity=0.214 Sum_probs=84.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc------------------------
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK------------------------ 148 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~------------------------ 148 (267)
.++.+|||||||+|.++..+++.++ ..+|+|||+|+.|++.|++++...+..
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~----~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWG----PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTV 120 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTC----CSEEEEEESCHHHHHHHHHTC------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcC----CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 4678999999999999999999865 479999999999999999997654310
Q ss_pred ------------------------------ccccceEEEecChhhhhh--cCCCCCcEEEEEEeCCCCCCCCCceee---
Q 041272 149 ------------------------------AEKGLVKLFNMCHSRMEE--IVPKSTAVRLVAFNLGYLPGGDKSVIT--- 193 (267)
Q Consensus 149 ------------------------------~~~~~v~~~~~~~~~l~~--~~~~~~~~d~ii~~~~~lp~~d~~~~~--- 193 (267)
....+++|++++..+... .......||+|++. .+.+
T Consensus 121 ~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~---------~vl~~ih 191 (292)
T 3g07_A 121 RKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCL---------SLTKWVH 191 (292)
T ss_dssp ---------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEE---------SCHHHHH
T ss_pred cccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEC---------hHHHHhh
Confidence 001478998876643221 11234589999998 3432
Q ss_pred ---chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 194 ---TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 194 ---~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..+...+++++++++|||||+|++..
T Consensus 192 l~~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 192 LNWGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 23467899999999999999998864
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-15 Score=120.14 Aligned_cols=102 Identities=8% Similarity=0.011 Sum_probs=83.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|..+..+++..+ +.+|+|+|+|+.+++.|++++...+ ..+++++.++..++. +...
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~----~~~~ 132 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP----EAHFTLLDSLGKRVRFLRQVQHELK----LENIEPVQSRVEEFP----SEPP 132 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEECCTTTSC----CCSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEecchhhCC----ccCC
Confidence 478999999999999999998853 5899999999999999999998876 456888887665432 2347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|+++. ......+++++.++|||||++++...
T Consensus 133 ~D~i~~~~-------------~~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 133 FDGVISRA-------------FASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp EEEEECSC-------------SSSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred cCEEEEec-------------cCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99999862 12346899999999999999988754
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-15 Score=123.04 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=82.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++. .+++++.++..++ ..+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~d~~~~---~~~- 104 (220)
T 3hnr_A 43 NKSFGNVLEFGVGTGNLTNKLLLA------GRTVYGIEPSREMRMIAKEKLP--------KEFSITEGDFLSF---EVP- 104 (220)
T ss_dssp HTCCSEEEEECCTTSHHHHHHHHT------TCEEEEECSCHHHHHHHHHHSC--------TTCCEESCCSSSC---CCC-
T ss_pred ccCCCeEEEeCCCCCHHHHHHHhC------CCeEEEEeCCHHHHHHHHHhCC--------CceEEEeCChhhc---CCC-
Confidence 457889999999999999999987 3799999999999999998754 2677777665443 222
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHH--HHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTK--MALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+||+|+++ .++++.++.. .+++++.++|||||++++.++.
T Consensus 105 ~~fD~v~~~---------~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 105 TSIDTIVST---------YAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp SCCSEEEEE---------SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred CCeEEEEEC---------cchhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 579999998 3444444444 4999999999999999998753
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-15 Score=123.94 Aligned_cols=106 Identities=10% Similarity=0.132 Sum_probs=86.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~ 170 (267)
+.++.+|||+|||+|..+..+++.. |+.+|+|+|+++.+++.|+++++..+ ...+++++.++..+... ..
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~-- 139 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASIS----DDIHVTTIERNETMIQYAKQNLATYH---FENQVRIIEGNALEQFENVN-- 139 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTC----TTCEEEEEECCHHHHHHHHHHHHHTT---CTTTEEEEESCGGGCHHHHT--
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECCHHHHHHhhc--
Confidence 3477899999999999999999854 25899999999999999999998877 34589999988765433 33
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
+.+||+|+.+.. ......+++++.++|||||++++.
T Consensus 140 ~~~fD~V~~~~~------------~~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 140 DKVYDMIFIDAA------------KAQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp TSCEEEEEEETT------------SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCccEEEEcCc------------HHHHHHHHHHHHHhcCCCeEEEEe
Confidence 347999998832 233568999999999999999774
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-15 Score=127.41 Aligned_cols=113 Identities=23% Similarity=0.324 Sum_probs=90.1
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...+.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|++++...+ ...++.++.++..++. .
T Consensus 59 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~----~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~--~ 128 (298)
T 1ri5_A 59 RLYTKRGDSVLDLGCGKGGDLLKYERA-G----IGEYYGVDIAEVSINDARVRARNMK---RRFKVFFRAQDSYGRH--M 128 (298)
T ss_dssp HHHCCTTCEEEEETCTTTTTHHHHHHH-T----CSEEEEEESCHHHHHHHHHHHHTSC---CSSEEEEEESCTTTSC--C
T ss_pred HHhCCCCCeEEEECCCCCHHHHHHHHC-C----CCEEEEEECCHHHHHHHHHHHHhcC---CCccEEEEECCccccc--c
Confidence 345678899999999999999998876 2 3599999999999999999998765 2357888887665442 1
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceee----chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVIT----TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+..||+|+++. +.+ +.++..++++++.++|||||++++..+
T Consensus 129 ~~~~~fD~v~~~~---------~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 129 DLGKEFDVISSQF---------SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp CCSSCEEEEEEES---------CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCEEEECc---------hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1345899999883 232 356778999999999999999998876
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-15 Score=126.65 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=86.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++.. . ..++.++.++..++ ..+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~-~----~~~~~~~~~d~~~~---~~~ 101 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR------GYRYIALDADAAMLEVFRQKIAG-V----DRKVQVVQADARAI---PLP 101 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT------TCEEEEEESCHHHHHHHHHHTTT-S----CTTEEEEESCTTSC---CSC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhhc-c----CCceEEEEcccccC---CCC
Confidence 4567889999999999999999987 37999999999999999998822 2 46889988776543 234
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
+..||+|+++ .+.++.++...+++++.++|||||++++.
T Consensus 102 ~~~fD~v~~~---------~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 102 DESVHGVIVV---------HLWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp TTCEEEEEEE---------SCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCeeEEEEC---------CchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 4589999998 34555556789999999999999999887
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=128.66 Aligned_cols=120 Identities=15% Similarity=0.148 Sum_probs=88.8
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
....++.....++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+. ....++++++++..
T Consensus 71 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 71 EAREFATRTGPVSGPVLELAAGMGRLTFPFLDL------GWEVTALELSTSVLAAFRKRLAEAPA-DVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHCCCCSCEEEETCTTTTTHHHHHTT------TCCEEEEESCHHHHHHHHHHHHTSCH-HHHTTEEEEECBTT
T ss_pred HHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHhhccc-ccccceEEEeCchh
Confidence 333444333344569999999999999999987 36899999999999999999887540 00167999987765
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
++. . +..||+|++.. .+.+. .++...+++++.++|||||++++.++.
T Consensus 144 ~~~---~-~~~fD~v~~~~--------~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 144 AFA---L-DKRFGTVVISS--------GSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp BCC---C-SCCEEEEEECH--------HHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCC---c-CCCcCEEEECC--------cccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 542 2 45899888642 12222 245689999999999999999998763
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-15 Score=117.72 Aligned_cols=111 Identities=16% Similarity=0.130 Sum_probs=87.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|+++++..+ ...+++++.++..+......
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~-~----~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~-- 98 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR-G----MSAAVLVEKNRKAQAIIQDNIIMTK---AENRFTLLKMEAERAIDCLT-- 98 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT-T----CCEEEEECCCHHHHHHHHHHHHTTT---CGGGEEEECSCHHHHHHHBC--
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc-C----CCEEEEEECCHHHHHHHHHHHHHcC---CCCceEEEECcHHHhHHhhc--
Confidence 457789999999999999999987 2 3699999999999999999998876 34579999988776433322
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHH--hcccCCcEEEEEEecC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE--RILIPGGLISMVVYVG 222 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~ 222 (267)
..||+|++++++. .....+.++.+. ++|||||++++.+...
T Consensus 99 ~~fD~i~~~~~~~----------~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 99 GRFDLVFLDPPYA----------KETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SCEEEEEECCSSH----------HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCEEEECCCCC----------cchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 3599999995431 133456677776 9999999999988743
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=124.41 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=89.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|..+..+++.++. +++|+++|+++.+++.|+++++..+ ...+++++.++..+........
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~ 135 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPK---DGTLITCDVDEKSTALAKEYWEKAG---LSDKIGLRLSPAKDTLAELIHA 135 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCT---TCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHTT
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCC---CCEEEEEeCCHHHHHHHHHHHHHCC---CCCceEEEeCCHHHHHHHhhhc
Confidence 346789999999999999999998753 5899999999999999999998877 3456999998876543322111
Q ss_pred ---CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 ---TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ---~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|+.+.. ......+++++.++|||||++++...
T Consensus 136 ~~~~~fD~v~~~~~------------~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 136 GQAWQYDLIYIDAD------------KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp TCTTCEEEEEECSC------------GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred cCCCCccEEEECCC------------HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 47999998742 34567899999999999999988654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-15 Score=122.85 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=84.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-ccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-AEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|++++...+.. ....+++++.++...+ ....
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~ 100 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKS----FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR---DKRF 100 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTT----CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC---CGGG
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCC----CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc---cccc
Confidence 5678999999999999999998743 379999999999999999998775510 0012789988765322 2223
Q ss_pred CcEEEEEEeCCCCCCCCCceeechh--hHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSE--TTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+||+|++. .++++.+ ...++++++.++|||||+++++..
T Consensus 101 ~~fD~V~~~---------~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 101 SGYDAATVI---------EVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp TTCSEEEEE---------SCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred CCCCEEEEH---------HHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 479999987 3444434 447999999999999997766554
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-14 Score=119.48 Aligned_cols=134 Identities=9% Similarity=0.108 Sum_probs=98.8
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||+|||+|.+++.+|+.. |..+|+|+|+++.+++.|++|++.++ ...+++++.++.. +.++
T Consensus 11 ~~v~~g~~VlDIGtGsG~l~i~la~~~----~~~~V~avDi~~~al~~A~~N~~~~g---l~~~i~~~~~d~l---~~l~ 80 (225)
T 3kr9_A 11 SFVSQGAILLDVGSDHAYLPIELVERG----QIKSAIAGEVVEGPYQSAVKNVEAHG---LKEKIQVRLANGL---AAFE 80 (225)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHHTT----SEEEEEEEESSHHHHHHHHHHHHHTT---CTTTEEEEECSGG---GGCC
T ss_pred HhCCCCCEEEEeCCCcHHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEECchh---hhcc
Confidence 456788999999999999999999873 25799999999999999999999988 4567999986652 2222
Q ss_pred CCCcEEEEEEe-CCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEE
Q 041272 170 KSTAVRLVAFN-LGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 170 ~~~~~d~ii~~-~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (267)
....||+|+.. ++ ......++.++.+.|+++|++++.-. .....+.+|+.. .+|.+.
T Consensus 81 ~~~~~D~IviaG~G------------g~~i~~Il~~~~~~L~~~~~lVlq~~-------~~~~~vr~~L~~---~Gf~i~ 138 (225)
T 3kr9_A 81 ETDQVSVITIAGMG------------GRLIARILEEGLGKLANVERLILQPN-------NREDDLRIWLQD---HGFQIV 138 (225)
T ss_dssp GGGCCCEEEEEEEC------------HHHHHHHHHHTGGGCTTCCEEEEEES-------SCHHHHHHHHHH---TTEEEE
T ss_pred cCcCCCEEEEcCCC------------hHHHHHHHHHHHHHhCCCCEEEEECC-------CCHHHHHHHHHH---CCCEEE
Confidence 22258877643 21 23346889999999999999977544 134566677765 457777
Q ss_pred EEeeecC
Q 041272 249 KFQMLNR 255 (267)
Q Consensus 249 ~~~~~~~ 255 (267)
....+..
T Consensus 139 ~e~lv~e 145 (225)
T 3kr9_A 139 AESILEE 145 (225)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 6655443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=125.23 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=86.6
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc--------cccccccceEEEecChh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT--------TSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~--------~~~~~~~~v~~~~~~~~ 162 (267)
.++++.+|||+|||+|.++..+++..+ ..+|+|||+|+.+++.|+++++.+ + ..++.++.++..
T Consensus 46 ~~~~~~~vLDiGcG~G~~~~~la~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~----~~nv~~~~~D~~ 117 (246)
T 2vdv_E 46 QMTKKVTIADIGCGFGGLMIDLSPAFP----EDLILGMEIRVQVTNYVEDRIIALRNNTASKHG----FQNINVLRGNAM 117 (246)
T ss_dssp CBSCCEEEEEETCTTSHHHHHHHHHST----TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST----TTTEEEEECCTT
T ss_pred cCCCCCEEEEEcCCCCHHHHHHHHhCC----CCCEEEEEcCHHHHHHHHHHHHHHhhccccccC----CCcEEEEeccHH
Confidence 345788999999999999999999853 479999999999999999998875 4 468999988876
Q ss_pred h-hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 163 R-MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 163 ~-l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+ +...+ +...+|.|+.+++. |..+.......-....+++++.++|||||++++.+
T Consensus 118 ~~l~~~~-~~~~~d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 118 KFLPNFF-EKGQLSKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp SCGGGTS-CTTCEEEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhc-cccccCEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 5 33323 34579999877533 11100000000012589999999999999998865
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.3e-15 Score=126.19 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=87.6
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+.++.+|||+|||+|.++..+++.+++ +.+|+++|+++.+++.|+++++..+ ...+++++.++..+. ++
T Consensus 108 ~~~~~~~~VLDiG~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~ 178 (277)
T 1o54_A 108 LDVKEGDRIIDTGVGSGAMCAVLARAVGS---SGKVFAYEKREEFAKLAESNLTKWG---LIERVTIKVRDISEG---FD 178 (277)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHTTT---TCEEEEECCCHHHHHHHHHHHHHTT---CGGGEEEECCCGGGC---CS
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHcC---CCCCEEEEECCHHHc---cc
Confidence 35678899999999999999999998653 5899999999999999999998876 336788888766443 22
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..||+|+++++. ...+++++.++|+|||++++.+.
T Consensus 179 -~~~~D~V~~~~~~--------------~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 179 -EKDVDALFLDVPD--------------PWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp -CCSEEEEEECCSC--------------GGGTHHHHHHHEEEEEEEEEEES
T ss_pred -CCccCEEEECCcC--------------HHHHHHHHHHHcCCCCEEEEEeC
Confidence 3479999998422 24789999999999999998775
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=121.94 Aligned_cols=151 Identities=14% Similarity=0.137 Sum_probs=96.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++.. |+.+|+|+|+|+.|++.+.++++++.......++++++++..++. ..
T Consensus 24 ~~~~~~~vLDiGcG~G~~~~~la~~~----p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~---~~ 96 (218)
T 3mq2_A 24 RSQYDDVVLDVGTGDGKHPYKVARQN----PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP---PL 96 (218)
T ss_dssp HTTSSEEEEEESCTTCHHHHHHHHHC----TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC---SC
T ss_pred hccCCCEEEEecCCCCHHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC---CC
Confidence 46788999999999999999999985 358999999999998864443332110001458999987776543 22
Q ss_pred CCcEEEEEEeCCCCCCCCCcee--echhhHHHHHHHHHhcccCCcEEEEEEecCCC----------CChhhHHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGGDKSVI--TTSETTKMALEAAERILIPGGLISMVVYVGHP----------GGREELEAVEAFAR 238 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----------~~~~~~~~~~~~~~ 238 (267)
+.. |.+...+.+ ... ++.++...+++++.++|||||++++......- ...........+..
T Consensus 97 ~~~-d~v~~~~~~------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 169 (218)
T 3mq2_A 97 SGV-GELHVLMPW------GSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAP 169 (218)
T ss_dssp CCE-EEEEEESCC------HHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHH
T ss_pred CCC-CEEEEEccc------hhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHH
Confidence 334 666654321 111 13334478999999999999999986532110 00011112222444
Q ss_pred hCCCCceEEEEEeeecC
Q 041272 239 SLSVDDWICCKFQMLNR 255 (267)
Q Consensus 239 ~l~~~~~~~~~~~~~~~ 255 (267)
.+...+|++....++..
T Consensus 170 ~l~~aGf~i~~~~~~~~ 186 (218)
T 3mq2_A 170 RYAEAGWKLADCRYLEP 186 (218)
T ss_dssp HHHHTTEEEEEEEEECH
T ss_pred HHHHcCCCceeeeccch
Confidence 55567898888776643
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-15 Score=129.03 Aligned_cols=115 Identities=11% Similarity=0.110 Sum_probs=78.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccc--ccceEEEecCh------hhhh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE--KGLVKLFNMCH------SRME 165 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~--~~~v~~~~~~~------~~l~ 165 (267)
++.+|||||||+|..+..++... ..+|+|+|+|+.|++.|++++...+.+.. .-++++.+.+. .++.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-----~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~ 122 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-----IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVR 122 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHH
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-----CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhh
Confidence 47899999999998777666542 36899999999999999999876441000 00255655544 3333
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.. ++.+||+|++.....- ....++...+++++.++|||||++++.+.
T Consensus 123 ~~~-~~~~FD~V~~~~~lhy------~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 123 EVF-YFGKFNIIDWQFAIHY------SFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp TTC-CSSCEEEEEEESCGGG------TCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc-cCCCeeEEEECchHHH------hCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 222 2458999987742100 00113447999999999999999998876
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-15 Score=124.62 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=86.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.|++.|+++. .+++++.++..++. .
T Consensus 30 ~~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~~----~ 92 (259)
T 2p35_A 30 PLERVLNGYDLGCGPGNSTELLTDRYG----VNVITGIDSDDDMLEKAADRL---------PNTNFGKADLATWK----P 92 (259)
T ss_dssp CCSCCSSEEEETCTTTHHHHHHHHHHC----TTSEEEEESCHHHHHHHHHHS---------TTSEEEECCTTTCC----C
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHhC---------CCcEEEECChhhcC----c
Confidence 356788999999999999999999863 479999999999999999861 46788877665443 3
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+..||+|+++ .++++.++...+++++.++|||||++++.++.
T Consensus 93 ~~~fD~v~~~---------~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 93 AQKADLLYAN---------AVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp SSCEEEEEEE---------SCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred cCCcCEEEEe---------CchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 4589999998 35555667789999999999999999998763
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.9e-15 Score=126.28 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=86.9
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..++ . +++++.++..++. . +.
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~------g~~v~~vD~s~~~~~~a~~~~~~~~----~-~~~~~~~d~~~~~---~-~~ 183 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL------GYDVTSWDHNENSIAFLNETKEKEN----L-NISTALYDINAAN---I-QE 183 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTT----C-CEEEEECCGGGCC---C-CS
T ss_pred cCCCcEEEECCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHcC----C-ceEEEEecccccc---c-cC
Confidence 37889999999999999999987 3699999999999999999998876 2 8888887665433 2 45
Q ss_pred cEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 173 AVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.||+|+++. +.+ ..+....+++++.++|||||++++++...
T Consensus 184 ~fD~i~~~~---------~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 226 (286)
T 3m70_A 184 NYDFIVSTV---------VFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMS 226 (286)
T ss_dssp CEEEEEECS---------SGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred CccEEEEcc---------chhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 899999984 232 23566799999999999999988877643
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=129.39 Aligned_cols=117 Identities=14% Similarity=0.152 Sum_probs=82.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEE--EEEeCChHHHHHHHHHHhhccccccccceEE--EecChhhhhhc-
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCV--YGLDIQSEALKSTSSLLDKTTSKAEKGLVKL--FNMCHSRMEEI- 167 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v--~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~- 167 (267)
.++.+|||||||+|.++..++..+...+|+..| +|+|+|++|++.|++++.... ...++.+ ...+..++...
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~ 127 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS---NLENVKFAWHKETSSEYQSRM 127 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS---SCTTEEEEEECSCHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc---CCCcceEEEEecchhhhhhhh
Confidence 456799999999998776544332110124544 999999999999999986531 1244444 45444444320
Q ss_pred --CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..++.+||+|++. .++++.++..+++++++++|||||++++....
T Consensus 128 ~~~~~~~~fD~V~~~---------~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 128 LEKKELQKWDFIHMI---------QMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp HTTTCCCCEEEEEEE---------SCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccccCCCceeEEEEe---------eeeeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 1234579999998 46777778889999999999999999988653
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=124.77 Aligned_cols=121 Identities=12% Similarity=0.137 Sum_probs=84.7
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc--cccccceEEEecChhh-hhhcC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS--KAEKGLVKLFNMCHSR-MEEIV 168 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~--~~~~~~v~~~~~~~~~-l~~~~ 168 (267)
..++.+|||||||+|.++..+|+..+ +..|+|||+|+.|++.|+++++.... .....|+.+++++..+ +...+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~ 119 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFP----DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF 119 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGST----TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHC
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCC----CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhC
Confidence 45677999999999999999998853 58999999999999999998764100 0014689999988765 44333
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. +..+|.|+++++. |..... ++. -....+++++.++|||||++++.+.
T Consensus 120 ~-~~~~D~v~~~~~d-p~~k~~--h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 120 Y-KGQLTKMFFLFPD-PHFKRT--KHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp C-TTCEEEEEEESCC--------------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred C-CcCeeEEEEeCCC-chhhhh--hhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 3 4579999887532 111000 000 0114799999999999999998764
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-14 Score=112.72 Aligned_cols=128 Identities=18% Similarity=0.159 Sum_probs=90.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++. . +|+|+|+|+.|++. . .++++++++..+ ... +.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~------~-~v~gvD~s~~~~~~--------~-----~~~~~~~~d~~~---~~~-~~ 77 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR------N-TVVSTDLNIRALES--------H-----RGGNLVRADLLC---SIN-QE 77 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT------S-EEEEEESCHHHHHT--------C-----SSSCEEECSTTT---TBC-GG
T ss_pred CCCCeEEEeccCccHHHHHHHhc------C-cEEEEECCHHHHhc--------c-----cCCeEEECChhh---hcc-cC
Confidence 46779999999999999999987 4 89999999999987 1 357788766543 222 25
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEee
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQM 252 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (267)
+||+|++|+++.+..+............+++++.+.| |||+++++.... .....+.++++. .+|.......
T Consensus 78 ~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----~~~~~l~~~l~~---~gf~~~~~~~ 148 (170)
T 3q87_B 78 SVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----NRPKEVLARLEE---RGYGTRILKV 148 (170)
T ss_dssp GCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----GCHHHHHHHHHH---TTCEEEEEEE
T ss_pred CCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----CCHHHHHHHHHH---CCCcEEEEEe
Confidence 8999999998876554422222223357888888888 999999987632 234455555554 4566555444
Q ss_pred e
Q 041272 253 L 253 (267)
Q Consensus 253 ~ 253 (267)
.
T Consensus 149 ~ 149 (170)
T 3q87_B 149 R 149 (170)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-14 Score=127.53 Aligned_cols=127 Identities=9% Similarity=0.126 Sum_probs=90.4
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC---
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS--- 171 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~--- 171 (267)
+.+|||+|||+|.+++.+|+. ..+|+|+|+|+.+++.|++|++.++ ..+++++.++..++.......
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~------~~~V~gvd~~~~ai~~a~~n~~~ng----~~~v~~~~~d~~~~~~~~~~~~~~ 283 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN------FDRVLATEIAKPSVAAAQYNIAANH----IDNVQIIRMAAEEFTQAMNGVREF 283 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG------SSEEEEECCCHHHHHHHHHHHHHTT----CCSEEEECCCSHHHHHHHSSCCCC
T ss_pred CCEEEEccCCCCHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEECCHHHHHHHHhhcccc
Confidence 679999999999999999985 3689999999999999999999887 468999998887764322211
Q ss_pred ----------CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 172 ----------TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 172 ----------~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
..||+|+.|++.. .+.+++.+.|+++|.++++.+.. ....+.+..+.+
T Consensus 284 ~~l~~~~~~~~~fD~Vv~dPPr~---------------g~~~~~~~~l~~~g~ivyvsc~p----~t~ard~~~l~~--- 341 (369)
T 3bt7_A 284 NRLQGIDLKSYQCETIFVDPPRS---------------GLDSETEKMVQAYPRILYISCNP----ETLCKNLETLSQ--- 341 (369)
T ss_dssp TTGGGSCGGGCCEEEEEECCCTT---------------CCCHHHHHHHTTSSEEEEEESCH----HHHHHHHHHHHH---
T ss_pred ccccccccccCCCCEEEECcCcc---------------ccHHHHHHHHhCCCEEEEEECCH----HHHHHHHHHHhh---
Confidence 2699999996542 12345666677888877666521 111222222221
Q ss_pred CCceEEEEEeeecC
Q 041272 242 VDDWICCKFQMLNR 255 (267)
Q Consensus 242 ~~~~~~~~~~~~~~ 255 (267)
+|.+.....++.
T Consensus 342 --~y~~~~~~~~D~ 353 (369)
T 3bt7_A 342 --THKVERLALFDQ 353 (369)
T ss_dssp --HEEEEEEEEECC
T ss_pred --CcEEEEEEeecc
Confidence 487777776655
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=119.92 Aligned_cols=109 Identities=9% Similarity=0.143 Sum_probs=87.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|..+..+++.++ +.+|+++|+++.+++.|+++++..+ ...++.++.++..+.......+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~ 124 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALP----EATIVSIERDERRYEEAHKHVKALG---LESRIELLFGDALQLGEKLELY 124 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCT----TCEEEEECCCHHHHHHHHHHHHHTT---CTTTEEEECSCGGGSHHHHTTS
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECCHHHHHHhcccC
Confidence 45778999999999999999999863 4899999999999999999998876 3457999988776543222113
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..||+|+++.+. .....+++++.++|||||++++..
T Consensus 125 ~~fD~I~~~~~~------------~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 125 PLFDVLFIDAAK------------GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp CCEEEEEEEGGG------------SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCccEEEECCCH------------HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 479999998421 245689999999999999998864
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-15 Score=119.96 Aligned_cols=107 Identities=16% Similarity=0.102 Sum_probs=84.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.+++.++... ..+|+|+|+|+.|++.|+++++.++ ..++++++++..+.... ....
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-----~~~V~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~D~~~~~~~--~~~~ 122 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-----AAGATLIEMDRAVSQQLIKNLATLK----AGNARVVNSNAMSFLAQ--KGTP 122 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-----CSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCHHHHHSS--CCCC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-----CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHhh--cCCC
Confidence 57899999999999999887762 2589999999999999999999877 36899998877654322 2347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHh--cccCCcEEEEEEec
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAER--ILIPGGLISMVVYV 221 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~~ 221 (267)
||+|+++++|. ......+++.+.+ +|||||++++.+..
T Consensus 123 fD~V~~~~p~~----------~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 123 HNIVFVDPPFR----------RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp EEEEEECCSSS----------TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCEEEECCCCC----------CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 99999996542 1233567777765 59999999988774
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=116.52 Aligned_cols=135 Identities=15% Similarity=0.053 Sum_probs=95.2
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE 166 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 166 (267)
++...++++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++. .++.++..+..++
T Consensus 39 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~~~~~~~~a~~~~---------~~~~~~~~d~~~~-- 101 (195)
T 3cgg_A 39 LIDAMAPRGAKILDAGCGQGRIGGYLSKQ------GHDVLGTDLDPILIDYAKQDF---------PEARWVVGDLSVD-- 101 (195)
T ss_dssp HHHHHSCTTCEEEEETCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTTS--
T ss_pred HHHHhccCCCeEEEECCCCCHHHHHHHHC------CCcEEEEcCCHHHHHHHHHhC---------CCCcEEEcccccC--
Confidence 44445778899999999999999999987 369999999999999999864 3467777665443
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (267)
..++..||+|+++...+. ....+....+++++.++|||||++++......... ...+...++ ..+|.
T Consensus 102 -~~~~~~~D~i~~~~~~~~------~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~---~~~~~~~l~---~~Gf~ 168 (195)
T 3cgg_A 102 -QISETDFDLIVSAGNVMG------FLAEDGREPALANIHRALGADGRAVIGFGAGRGWV---FGDFLEVAE---RVGLE 168 (195)
T ss_dssp -CCCCCCEEEEEECCCCGG------GSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCC---HHHHHHHHH---HHTEE
T ss_pred -CCCCCceeEEEECCcHHh------hcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcC---HHHHHHHHH---HcCCE
Confidence 223457999998732211 11235568999999999999999998876433212 233333333 34677
Q ss_pred EEEEe
Q 041272 247 CCKFQ 251 (267)
Q Consensus 247 ~~~~~ 251 (267)
+....
T Consensus 169 ~~~~~ 173 (195)
T 3cgg_A 169 LENAF 173 (195)
T ss_dssp EEEEE
T ss_pred Eeeee
Confidence 76653
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-15 Score=118.48 Aligned_cols=111 Identities=17% Similarity=0.134 Sum_probs=85.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~~ 171 (267)
.++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++.|++++..++ ...++++++++..+... ....+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~-~----~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~ 114 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSR-G----MDKSICIEKNFAALKVIKENIAITK---EPEKFEVRKMDANRALEQFYEEK 114 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHHTT
T ss_pred cCCCCEEEeCCccCHHHHHHHHc-C----CCEEEEEECCHHHHHHHHHHHHHhC---CCcceEEEECcHHHHHHHHHhcC
Confidence 46789999999999999998875 2 3699999999999999999998876 34689999988776433 21123
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHH--HhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA--ERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~ 221 (267)
..||+|++++++.. ......++.+ .++|||||++++....
T Consensus 115 ~~fD~i~~~~~~~~----------~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 115 LQFDLVLLDPPYAK----------QEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CCEEEEEECCCGGG----------CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCCEEEECCCCCc----------hhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 47999999965421 1224556666 8899999999987764
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-14 Score=117.56 Aligned_cols=134 Identities=10% Similarity=0.100 Sum_probs=100.6
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||+|||+|++++.+++.. |..+|+|+|+++.+++.|++|++.++ ...+++++.+|.. +.+.
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~----~~~~V~AvDi~~~al~~A~~N~~~~g---l~~~I~~~~gD~l---~~~~ 86 (230)
T 3lec_A 17 NYVPKGARLLDVGSDHAYLPIFLLQMG----YCDFAIAGEVVNGPYQSALKNVSEHG---LTSKIDVRLANGL---SAFE 86 (230)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHHTT----CEEEEEEEESSHHHHHHHHHHHHHTT---CTTTEEEEECSGG---GGCC
T ss_pred HhCCCCCEEEEECCchHHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchh---hccc
Confidence 456788999999999999999999873 24789999999999999999999988 4567999986653 3333
Q ss_pred CCCcEEEEE-EeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEE
Q 041272 170 KSTAVRLVA-FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 170 ~~~~~d~ii-~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (267)
++..||+|+ .+++ ......++.+..+.|+++|+|++.-.. ....+.+|+... +|.+.
T Consensus 87 ~~~~~D~IviaGmG------------g~lI~~IL~~~~~~l~~~~~lIlqp~~-------~~~~lr~~L~~~---Gf~i~ 144 (230)
T 3lec_A 87 EADNIDTITICGMG------------GRLIADILNNDIDKLQHVKTLVLQPNN-------REDDLRKWLAAN---DFEIV 144 (230)
T ss_dssp GGGCCCEEEEEEEC------------HHHHHHHHHHTGGGGTTCCEEEEEESS-------CHHHHHHHHHHT---TEEEE
T ss_pred cccccCEEEEeCCc------------hHHHHHHHHHHHHHhCcCCEEEEECCC-------ChHHHHHHHHHC---CCEEE
Confidence 333588765 4432 234567888999999999998776542 245677777764 57777
Q ss_pred EEeeecC
Q 041272 249 KFQMLNR 255 (267)
Q Consensus 249 ~~~~~~~ 255 (267)
....+..
T Consensus 145 ~E~lv~e 151 (230)
T 3lec_A 145 AEDILTE 151 (230)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 6665544
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-14 Score=121.23 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=97.7
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-----------------------
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK----------------------- 148 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~----------------------- 148 (267)
..++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++...+..
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACES-----FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEK 128 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGT-----EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcc-----cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHH
Confidence 3567899999999999999988762 148999999999999999988653200
Q ss_pred --ccccce-EEEecChhhhhhcCC-CCCcEEEEEEeCCCCCCCCCceee----chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 149 --AEKGLV-KLFNMCHSRMEEIVP-KSTAVRLVAFNLGYLPGGDKSVIT----TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 149 --~~~~~v-~~~~~~~~~l~~~~~-~~~~~d~ii~~~~~lp~~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....++ .++..+..+...... ....||+|++.. +++ +.++...+++++.++|||||++++.+.
T Consensus 129 ~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~---------~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 129 EEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTL---------CLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES---------CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhh---------hhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 000126 777766654332111 115799999983 344 456788999999999999999999875
Q ss_pred cCCCC----------ChhhHHHHHHHHHhCCCCceEEEEEeeec
Q 041272 221 VGHPG----------GREELEAVEAFARSLSVDDWICCKFQMLN 254 (267)
Q Consensus 221 ~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (267)
..... .......+...++ ..+|+++......
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~aGf~~~~~~~~~ 240 (265)
T 2i62_A 200 LKSSYYMIGEQKFSSLPLGWETVRDAVE---EAGYTIEQFEVIS 240 (265)
T ss_dssp SSCCEEEETTEEEECCCCCHHHHHHHHH---HTTCEEEEEEEEC
T ss_pred CCCceEEcCCccccccccCHHHHHHHHH---HCCCEEEEEEEec
Confidence 32110 0012233444444 4578877766554
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-15 Score=120.33 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=84.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|..+..++... +.+|+|+|+|+.+++.|++++...+ .++.+++.+..++ ..+
T Consensus 20 ~~~~~~~vLDiGcG~G~~~~~~~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~---~~~ 86 (209)
T 2p8j_A 20 ESNLDKTVLDCGAGGDLPPLSIFVED-----GYKTYGIEISDLQLKKAENFSRENN-----FKLNISKGDIRKL---PFK 86 (209)
T ss_dssp HSSSCSEEEEESCCSSSCTHHHHHHT-----TCEEEEEECCHHHHHHHHHHHHHHT-----CCCCEEECCTTSC---CSC
T ss_pred ccCCCCEEEEECCCCCHHHHHHHHhC-----CCEEEEEECCHHHHHHHHHHHHhcC-----CceEEEECchhhC---CCC
Confidence 35678899999999999855444432 4799999999999999999987755 4678887665443 233
Q ss_pred CCcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+..||+|++.. +.++ .++..++++++.++|||||++++..+.
T Consensus 87 ~~~fD~v~~~~---------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 87 DESMSFVYSYG---------TIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp TTCEEEEEECS---------CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCceeEEEEcC---------hHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 45899999872 2332 367789999999999999999998764
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-14 Score=119.31 Aligned_cols=135 Identities=10% Similarity=0.168 Sum_probs=98.9
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...++++.+|||||||+|.+++.+++.. |..+|+|+|+++.+++.|++|++.++ ...+++++.+|. .+.+
T Consensus 16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~----~~~~V~avDi~~~al~~A~~N~~~~g---l~~~I~v~~gD~---l~~~ 85 (244)
T 3gnl_A 16 ASYITKNERIADIGSDHAYLPCFAVKNQ----TASFAIAGEVVDGPFQSAQKQVRSSG---LTEQIDVRKGNG---LAVI 85 (244)
T ss_dssp HTTCCSSEEEEEETCSTTHHHHHHHHTT----SEEEEEEEESSHHHHHHHHHHHHHTT---CTTTEEEEECSG---GGGC
T ss_pred HHhCCCCCEEEEECCccHHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEecch---hhcc
Confidence 3457788999999999999999999873 24789999999999999999999988 456799998665 3333
Q ss_pred CCCCcEEEEEE-eCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEE
Q 041272 169 PKSTAVRLVAF-NLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWIC 247 (267)
Q Consensus 169 ~~~~~~d~ii~-~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (267)
.++..||+|+. +++ ......++.++.+.|+++|+|++.-.. ....+.+|+... +|.+
T Consensus 86 ~~~~~~D~IviagmG------------g~lI~~IL~~~~~~L~~~~~lIlq~~~-------~~~~lr~~L~~~---Gf~i 143 (244)
T 3gnl_A 86 EKKDAIDTIVIAGMG------------GTLIRTILEEGAAKLAGVTKLILQPNI-------AAWQLREWSEQN---NWLI 143 (244)
T ss_dssp CGGGCCCEEEEEEEC------------HHHHHHHHHHTGGGGTTCCEEEEEESS-------CHHHHHHHHHHH---TEEE
T ss_pred CccccccEEEEeCCc------------hHHHHHHHHHHHHHhCCCCEEEEEcCC-------ChHHHHHHHHHC---CCEE
Confidence 33224887754 321 234567889999999999999876542 245666777653 5666
Q ss_pred EEEeeecC
Q 041272 248 CKFQMLNR 255 (267)
Q Consensus 248 ~~~~~~~~ 255 (267)
..-..+..
T Consensus 144 ~~E~lv~e 151 (244)
T 3gnl_A 144 TSEAILRE 151 (244)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 55554433
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-14 Score=129.97 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=94.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~ 170 (267)
+.++.+|||+|||+|.++..+|+. ..+|+|+|+|+++++.|++|++.++ ..++++++++..+... ....
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~------~~~V~gvD~s~~al~~A~~n~~~~~----~~~v~f~~~d~~~~l~~~~~~ 353 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQNARLNG----LQNVTFYHENLEEDVTKQPWA 353 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCTTSCCSSSGGG
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh------CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEECCHHHHhhhhhhh
Confidence 457789999999999999999987 3799999999999999999999887 4589999987765322 1112
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF 250 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (267)
+..||+|++|+++... .++++.+.+ ++|++++++++.+. ...+.+ ..+...+|.+...
T Consensus 354 ~~~fD~Vv~dPPr~g~------------~~~~~~l~~-~~p~~ivyvsc~p~-----tlard~----~~l~~~Gy~~~~~ 411 (433)
T 1uwv_A 354 KNGFDKVLLDPARAGA------------AGVMQQIIK-LEPIRIVYVSCNPA-----TLARDS----EALLKAGYTIARL 411 (433)
T ss_dssp TTCCSEEEECCCTTCC------------HHHHHHHHH-HCCSEEEEEESCHH-----HHHHHH----HHHHHTTCEEEEE
T ss_pred cCCCCEEEECCCCccH------------HHHHHHHHh-cCCCeEEEEECChH-----HHHhhH----HHHHHCCcEEEEE
Confidence 3479999999766321 245555554 69999999887632 111222 2222346777766
Q ss_pred eeecC
Q 041272 251 QMLNR 255 (267)
Q Consensus 251 ~~~~~ 255 (267)
..++.
T Consensus 412 ~~~d~ 416 (433)
T 1uwv_A 412 AMLDM 416 (433)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 65554
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.1e-15 Score=119.93 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=89.0
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
..++...+.++.+|||+|||+|.++..+++.. . .+|+|+|+|+.+++.|+++... ..+++++.++..++
T Consensus 33 ~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~-~----~~v~~~D~s~~~~~~a~~~~~~------~~~i~~~~~d~~~~ 101 (215)
T 2pxx_A 33 RALLEPELRPEDRILVLGCGNSALSYELFLGG-F----PNVTSVDYSSVVVAAMQACYAH------VPQLRWETMDVRKL 101 (215)
T ss_dssp HHHHGGGCCTTCCEEEETCTTCSHHHHHHHTT-C----CCEEEEESCHHHHHHHHHHTTT------CTTCEEEECCTTSC
T ss_pred HHHHHHhcCCCCeEEEECCCCcHHHHHHHHcC-C----CcEEEEeCCHHHHHHHHHhccc------CCCcEEEEcchhcC
Confidence 34444456788999999999999999999872 1 3899999999999999998764 25788887766544
Q ss_pred hhcCCCCCcEEEEEEeCCC--CCCCCCce----eechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGY--LPGGDKSV----ITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~--lp~~d~~~----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..++..||+|+++... +....... ..+.....++++++.++|||||++++.++
T Consensus 102 ---~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 102 ---DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp ---CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ---CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 2334579999987421 11000000 01245668999999999999999999887
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=118.83 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=86.0
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|..+..+++.++. +.+|+++|+++.+++.|+++++..+ ...+++++.++..+..... +.
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~--~~ 126 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISI---SSRVVMIDPDRDNVEHARRMLHDNG---LIDRVELQVGDPLGIAAGQ--RD 126 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCT---TCEEEEEESCHHHHHHHHHHHHHHS---GGGGEEEEESCHHHHHTTC--CS
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHCC---CCceEEEEEecHHHHhccC--CC
Confidence 45779999999999999999998653 5899999999999999999998876 3467999988876543322 24
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
||+|+.+.. ......+++++.++|||||++++..
T Consensus 127 -fD~v~~~~~------------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 127 -IDILFMDCD------------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp -EEEEEEETT------------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred -CCEEEEcCC------------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 999999832 1344689999999999999998754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-14 Score=121.57 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=87.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChH------HHHHHHHHHhhccccccccceEEEecC-hhh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE------ALKSTSSLLDKTTSKAEKGLVKLFNMC-HSR 163 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~------~i~~a~~~~~~~~~~~~~~~v~~~~~~-~~~ 163 (267)
.++++.+|||||||+|.++..+++..++ ..+|+|+|+|+. +++.|++++...+ ...+++++..+ ...
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~---~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~ 113 (275)
T 3bkx_A 40 QVKPGEKILEIGCGQGDLSAVLADQVGS---SGHVTGIDIASPDYGAPLTLGQAWNHLLAGP---LGDRLTVHFNTNLSD 113 (275)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCT---TCEEEEECSSCTTCCSSSCHHHHHHHHHTST---TGGGEEEECSCCTTT
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEEECCccccccHHHHHHHHHHHHhcC---CCCceEEEECChhhh
Confidence 4678999999999999999999998643 479999999997 9999999998766 34689998876 111
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
.....++.+||+|+++. ++++.++...+++.+.++++|||++++.++...
T Consensus 114 -~~~~~~~~~fD~v~~~~---------~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 114 -DLGPIADQHFDRVVLAH---------SLWYFASANALALLFKNMAAVCDHVDVAEWSMQ 163 (275)
T ss_dssp -CCGGGTTCCCSEEEEES---------CGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred -ccCCCCCCCEEEEEEcc---------chhhCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 11122345799999883 444444445677777777777999999887543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-14 Score=119.22 Aligned_cols=110 Identities=13% Similarity=0.186 Sum_probs=87.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCC-
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVP- 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~- 169 (267)
+.++.+|||+|||+|..+..+++.++. +.+|+++|+++.+++.|+++++..+ ...+++++.++..+... ...
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~~~~~~~~ 131 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPE---DGKILCCDVSEEWTNVARKYWKENG---LENKIFLKLGSALETLQVLIDS 131 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCT---TCEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHC
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC---CCCCEEEEECCHHHHHHHHHhh
Confidence 457889999999999999999998753 5799999999999999999998876 34569999888765322 211
Q ss_pred ----------C-C-CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 ----------K-S-TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ----------~-~-~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+ + ..||+|+.+.. .+....+++++.++|||||++++..
T Consensus 132 ~~~~~~~~~f~~~~~~fD~I~~~~~------------~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 132 KSAPSWASDFAFGPSSIDLFFLDAD------------KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp SSCCGGGTTTCCSTTCEEEEEECSC------------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccccccccccCCCCCcCEEEEeCC------------HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 1 1 47999998831 2445688999999999999999865
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-15 Score=125.43 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=85.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC--
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-- 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-- 168 (267)
.+.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++.. .++++++++..++....
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~------~~v~gvD~s~~~~~~a~~~~~~-------~~~~~~~~d~~~~~~~~~~ 119 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFF------PRVIGLDVSKSALEIAAKENTA-------ANISYRLLDGLVPEQAAQI 119 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHS------SCEEEEESCHHHHHHHHHHSCC-------TTEEEEECCTTCHHHHHHH
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhC------CCEEEEECCHHHHHHHHHhCcc-------cCceEEECccccccccccc
Confidence 36788999999999999999999983 4899999999999999998732 47889887776543321
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.....||+|+++. ++++. ++...+++++.++|||||++++.++.
T Consensus 120 ~~~~~~d~v~~~~---------~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 120 HSEIGDANIYMRT---------GFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp HHHHCSCEEEEES---------SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred ccccCccEEEEcc---------hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 1111378888873 33333 36789999999999999999988874
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=124.97 Aligned_cols=115 Identities=19% Similarity=0.178 Sum_probs=85.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc---ccccceEEEecChhhhh---
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK---AEKGLVKLFNMCHSRME--- 165 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~---~~~~~v~~~~~~~~~l~--- 165 (267)
++++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|+++....+.. ....+++++++|..++.
T Consensus 32 ~~~~~~VLDlGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 106 (313)
T 3bgv_A 32 KKRDITVLDLGCGKGGDLLKWKKGR-----INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLID 106 (313)
T ss_dssp C--CCEEEEETCTTTTTHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTT
T ss_pred cCCCCEEEEECCCCcHHHHHHHhcC-----CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhh
Confidence 3477899999999999999999752 479999999999999999988753100 01247888887776543
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeec----hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITT----SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+..++.+||+|+++. ++++ .++...+++++.++|||||++++..+
T Consensus 107 ~~~~~~~~fD~V~~~~---------~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 107 KFRDPQMCFDICSCQF---------VCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TCSSTTCCEEEEEEET---------CGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hcccCCCCEEEEEEec---------chhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 1221234799999984 3332 35667999999999999999999877
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=131.76 Aligned_cols=138 Identities=17% Similarity=0.224 Sum_probs=102.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|..+..+|+.++. .++|+++|+|+.+++.+++|+++.+ .. +.++++|..++....
T Consensus 98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~---~g~V~AvDis~~~l~~a~~n~~r~G----~~-v~~~~~Da~~l~~~~-- 167 (464)
T 3m6w_A 98 DPKPGERVLDLAAAPGGKTTHLAARMGG---KGLLLANEVDGKRVRGLLENVERWG----AP-LAVTQAPPRALAEAF-- 167 (464)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTT---CSEEEEECSCHHHHHHHHHHHHHHC----CC-CEEECSCHHHHHHHH--
T ss_pred CcCCCCEEEEEcCCcCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC----Ce-EEEEECCHHHhhhhc--
Confidence 3568999999999999999999998754 4799999999999999999999988 44 889988887776433
Q ss_pred CCcEEEEEEeCCCCCCC-----CCcee--------echhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGG-----DKSVI--------TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~-----d~~~~--------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
...||.|++|+++.... ..... .......++++++.++|||||+|+++++.-.+ .+....+..++
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~--eEne~vv~~~l 245 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP--EENEGVVAHFL 245 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG--GGTHHHHHHHH
T ss_pred cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch--hcCHHHHHHHH
Confidence 24799999997762111 10101 11233478999999999999999987764322 23345566666
Q ss_pred HhC
Q 041272 238 RSL 240 (267)
Q Consensus 238 ~~l 240 (267)
+..
T Consensus 246 ~~~ 248 (464)
T 3m6w_A 246 KAH 248 (464)
T ss_dssp HHC
T ss_pred HHC
Confidence 654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.7e-15 Score=121.92 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=83.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|..+..+++. + ..+|+|+|+|+.+++.|+++... .+++++.++..++ ..++.
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~-~----~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~d~~~~---~~~~~ 106 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEH-G----ASYVLGLDLSEKMLARARAAGPD-------TGITYERADLDKL---HLPQD 106 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHTSCS-------SSEEEEECCGGGC---CCCTT
T ss_pred cCCCEEEEEcCcCCHHHHHHHHC-C----CCeEEEEcCCHHHHHHHHHhccc-------CCceEEEcChhhc---cCCCC
Confidence 47889999999999999999987 2 13999999999999999987653 3678887666543 23345
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|++.. ++++.++...+++++.++|||||++++...
T Consensus 107 ~fD~v~~~~---------~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 107 SFDLAYSSL---------ALHYVEDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp CEEEEEEES---------CGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceEEEEec---------cccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence 899999883 444455678999999999999999998764
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=120.12 Aligned_cols=107 Identities=19% Similarity=0.253 Sum_probs=83.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
.+++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...+ .++.+++++..++. . .
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~~---~-~ 103 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEEMLRVARRKAKERN-----LKIEFLQGDVLEIA---F-K 103 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTT-----CCCEEEESCGGGCC---C-C
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHhcC-----CceEEEECChhhcc---c-C
Confidence 356789999999999999999987 4699999999999999999998765 36888887665432 2 2
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..||+|++....+ .....+...++++++.++|||||++++..
T Consensus 104 ~~fD~v~~~~~~~------~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 104 NEFDAVTMFFSTI------MYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp SCEEEEEECSSGG------GGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccEEEEcCCch------hcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 4799999753211 11134567899999999999999998754
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-15 Score=122.70 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=81.6
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++ ++++..+..+....+ +
T Consensus 38 ~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~------------~~~~~~d~~~~~~~~-~ 98 (240)
T 3dli_A 38 YFKGCRRVLDIGCGRGEFLELCKEE------GIESIGVDINEDMIKFCEGK------------FNVVKSDAIEYLKSL-P 98 (240)
T ss_dssp GTTTCSCEEEETCTTTHHHHHHHHH------TCCEEEECSCHHHHHHHHTT------------SEEECSCHHHHHHTS-C
T ss_pred hhcCCCeEEEEeCCCCHHHHHHHhC------CCcEEEEECCHHHHHHHHhh------------cceeeccHHHHhhhc-C
Confidence 3567899999999999999999987 36899999999999999874 556666665543222 3
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechh--hHHHHHHHHHhcccCCcEEEEEEec
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSE--TTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+.+||+|++. .++++.+ +...+++++.++|||||++++....
T Consensus 99 ~~~fD~i~~~---------~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 99 DKYLDGVMIS---------HFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp TTCBSEEEEE---------SCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred CCCeeEEEEC---------CchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 4589999988 3444433 5589999999999999999998764
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.8e-15 Score=124.89 Aligned_cols=152 Identities=14% Similarity=0.066 Sum_probs=104.4
Q ss_pred ccccCCCCCCCCCCcchhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHH
Q 041272 62 NNCTPLPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSL 141 (267)
Q Consensus 62 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~ 141 (267)
+.|........+.++..+..+- .-+...+++|.+|||+|||+|.+++.+|+.. +++|+++|+|+.+++.+++|
T Consensus 95 ~G~~~~~D~~k~~f~~~~~~er--~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g-----~~~V~avD~np~a~~~~~~N 167 (278)
T 3k6r_A 95 NGIKYKLDVAKIMFSPANVKER--VRMAKVAKPDELVVDMFAGIGHLSLPIAVYG-----KAKVIAIEKDPYTFKFLVEN 167 (278)
T ss_dssp TTEEEEEETTTSCCCGGGHHHH--HHHHHHCCTTCEEEETTCTTTTTTHHHHHHT-----CCEEEEECCCHHHHHHHHHH
T ss_pred CCEEEEEeccceEEcCCcHHHH--HHHHHhcCCCCEEEEecCcCcHHHHHHHHhc-----CCeEEEEECCHHHHHHHHHH
Confidence 3343333333444433333332 2233457899999999999999999999872 36999999999999999999
Q ss_pred HhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 142 LDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 142 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
++.++ ..++++++++|..++. ....||.|+++++. ...+++..+.++||+||++.+.++.
T Consensus 168 ~~~N~---v~~~v~~~~~D~~~~~----~~~~~D~Vi~~~p~-------------~~~~~l~~a~~~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 168 IHLNK---VEDRMSAYNMDNRDFP----GENIADRILMGYVV-------------RTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp HHHTT---CTTTEEEECSCTTTCC----CCSCEEEEEECCCS-------------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHcC---CCCcEEEEeCcHHHhc----cccCCCEEEECCCC-------------cHHHHHHHHHHHcCCCCEEEEEeee
Confidence 99998 5678999988765442 24579999999532 1136788899999999999876653
Q ss_pred CCCCC-hhhHHHHHHHHHhC
Q 041272 222 GHPGG-REELEAVEAFARSL 240 (267)
Q Consensus 222 ~~~~~-~~~~~~~~~~~~~l 240 (267)
..... ....+.+++.....
T Consensus 228 ~e~~~~~~~~e~i~~~~~~~ 247 (278)
T 3k6r_A 228 PEKLMPREPFETFKRITKEY 247 (278)
T ss_dssp EGGGTTTTTHHHHHHHHHHT
T ss_pred cccccchhHHHHHHHHHHHc
Confidence 22111 11234455555544
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-14 Score=117.94 Aligned_cols=138 Identities=15% Similarity=0.156 Sum_probs=99.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh-hhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM-EEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l-~~~~~~~ 171 (267)
.++.+|||+|||+|+.+..+++.++. +++|+++|+++.+++.|+++++..+ ...+++++.++..+. ......+
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~~d~~~~l~~l~~~~ 144 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPP---DGQIIACDQDPNATAIAKKYWQKAG---VAEKISLRLGPALATLEQLTQGK 144 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCT---TCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHTSS
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcC
Confidence 46779999999999999999998753 5799999999999999999998877 346799998887653 3332222
Q ss_pred --CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC--C----CChhhHHHHHHHHHhCCC-
Q 041272 172 --TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH--P----GGREELEAVEAFARSLSV- 242 (267)
Q Consensus 172 --~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~--~----~~~~~~~~~~~~~~~l~~- 242 (267)
..||+|+.+.. ......+++++.++|||||++++...... . ........+.++.+.+..
T Consensus 145 ~~~~fD~V~~d~~------------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (232)
T 3cbg_A 145 PLPEFDLIFIDAD------------KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQD 212 (232)
T ss_dssp SCCCEEEEEECSC------------GGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTC
T ss_pred CCCCcCEEEECCC------------HHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhC
Confidence 57999998831 24567899999999999999988543211 0 112234455666655433
Q ss_pred CceEEE
Q 041272 243 DDWICC 248 (267)
Q Consensus 243 ~~~~~~ 248 (267)
..+...
T Consensus 213 ~~~~~~ 218 (232)
T 3cbg_A 213 ERVRIS 218 (232)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 334433
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=122.77 Aligned_cols=110 Identities=10% Similarity=0.120 Sum_probs=88.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC--
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP-- 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-- 169 (267)
..++.+|||||||+|+.+..+++.++. +++|+++|+++++++.|+++++..+ ...+++++.++..+....+.
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~i~~~~gda~~~l~~l~~~ 150 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPE---DGKILAMDINKENYELGLPVIKKAG---VDHKIDFREGPALPVLDEMIKD 150 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCT---TCEEEEEESCCHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHS
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC---CCCCeEEEECCHHHHHHHHHhc
Confidence 346679999999999999999998753 5899999999999999999998877 35689999988765433221
Q ss_pred --CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 --KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 --~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
....||+|+.+.. ......+++++.++|||||++++..
T Consensus 151 ~~~~~~fD~V~~d~~------------~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 151 EKNHGSYDFIFVDAD------------KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp GGGTTCBSEEEECSC------------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred cCCCCCEEEEEEcCc------------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 1247999998832 1345789999999999999998754
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=7.9e-15 Score=126.24 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=77.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-----------ccc-----------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-----------AEK----------- 151 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-----------~~~----------- 151 (267)
++.+|||||||+|..+..++... +.+|+|+|+|+.|++.|++++++.... ...
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSH-----FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 145 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG-----CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccC-----CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHH
Confidence 67899999999999655444432 369999999999999999976532100 000
Q ss_pred ----cceEEEecChhhhhhc---CCCCCcEEEEEEeCCCCCCCCCceeec----hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 152 ----GLVKLFNMCHSRMEEI---VPKSTAVRLVAFNLGYLPGGDKSVITT----SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 152 ----~~v~~~~~~~~~l~~~---~~~~~~~d~ii~~~~~lp~~d~~~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..++++..+..+...+ ..++.+||+|+++. ++++ .++..++++++.++|||||+|++...
T Consensus 146 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~---------~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~ 216 (289)
T 2g72_A 146 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAF---------CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 216 (289)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEES---------CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHhhhceEEecccCCCCCccccccCCCCCCEEEehh---------hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 0134454444331111 11234699999983 4444 56788999999999999999998753
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7.9e-15 Score=123.70 Aligned_cols=120 Identities=15% Similarity=0.095 Sum_probs=86.1
Q ss_pred CCCEEEEecCCCChHHHHHHHh--cCCCCCCcEEEEEeCChHHHHHHHHHHhhc---cccccccc---------------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKM--VADESSAGCVYGLDIQSEALKSTSSLLDKT---TSKAEKGL--------------- 153 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~--~~~~~p~~~v~giD~s~~~i~~a~~~~~~~---~~~~~~~~--------------- 153 (267)
++.+|||+|||+|.++..+++. .+ +.+|+|+|+|+.+++.|++++... + ...+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~----~~~v~gvDis~~~l~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 123 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRS----LRQVIASDVDPAPLELAAKNLALLSPAG---LTARELERREQSERFGKPS 123 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGG----EEEEEEEESCHHHHHHHHHHHHTTSHHH---HHHHHHHHHHHHHHHCCHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccC----CCeEEEEECCHHHHHHHHHHHHHhhhcc---ccccchhhhhhhhhccccc
Confidence 5679999999999999999987 32 479999999999999999998765 3 1111
Q ss_pred ----------eE-------------EEecChhhhhhc--CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhc
Q 041272 154 ----------VK-------------LFNMCHSRMEEI--VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208 (267)
Q Consensus 154 ----------v~-------------~~~~~~~~l~~~--~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~ 208 (267)
++ +++++..+.... ......||+|++|+++....+............+++++.++
T Consensus 124 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (250)
T 1o9g_A 124 YLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASA 203 (250)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHh
Confidence 55 777665432210 00223699999998775543211111245667899999999
Q ss_pred ccCCcEEEEEEe
Q 041272 209 LIPGGLISMVVY 220 (267)
Q Consensus 209 LkpgG~l~i~~~ 220 (267)
|||||+++++..
T Consensus 204 LkpgG~l~~~~~ 215 (250)
T 1o9g_A 204 LPAHAVIAVTDR 215 (250)
T ss_dssp SCTTCEEEEEES
T ss_pred cCCCcEEEEeCc
Confidence 999999998443
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.4e-15 Score=130.57 Aligned_cols=124 Identities=13% Similarity=-0.020 Sum_probs=90.5
Q ss_pred HHHhhHHH-hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHh-------hcccccc-c
Q 041272 81 TIAANGVW-KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD-------KTTSKAE-K 151 (267)
Q Consensus 81 ~~~~~~l~-~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~-------~~~~~~~-~ 151 (267)
......++ ...+.++++|||||||+|.+++.+|...+. .+|+|||+++.+++.|+++++ ..+ . .
T Consensus 159 ~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~----~kVvGIDiS~~~lelAr~n~e~frkr~~~~G---l~~ 231 (438)
T 3uwp_A 159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNC----KHHYGVEKADIPAKYAETMDREFRKWMKWYG---KKH 231 (438)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCC----SEEEEEECCHHHHHHHHHHHHHHHHHHHHHT---BCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCC----CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC---CCC
Confidence 33333333 345789999999999999999999987643 579999999999999998753 223 1 2
Q ss_pred cceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 152 ~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.+++|+++|..++.-.. .-..+|+|++|..+ + .++..+.|+++++.|||||+|++.....
T Consensus 232 ~rVefi~GD~~~lp~~d-~~~~aDVVf~Nn~~---------F-~pdl~~aL~Ei~RvLKPGGrIVssE~f~ 291 (438)
T 3uwp_A 232 AEYTLERGDFLSEEWRE-RIANTSVIFVNNFA---------F-GPEVDHQLKERFANMKEGGRIVSSKPFA 291 (438)
T ss_dssp CEEEEEECCTTSHHHHH-HHHTCSEEEECCTT---------C-CHHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred CCeEEEECcccCCcccc-ccCCccEEEEcccc---------c-CchHHHHHHHHHHcCCCCcEEEEeeccc
Confidence 68999998876653210 00258899988432 1 2566788899999999999998875543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.7e-14 Score=118.65 Aligned_cols=109 Identities=19% Similarity=0.232 Sum_probs=87.4
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-cccccccceEEEecChhhhhhcC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-TSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..+.++.+|||+|||+|.++..+++.+++ +.+|+++|+++++++.|++++... + ....+++++.++..+. .
T Consensus 95 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~g--~~~~~v~~~~~d~~~~---~ 166 (280)
T 1i9g_A 95 GDIFPGARVLEAGAGSGALTLSLLRAVGP---AGQVISYEQRADHAEHARRNVSGCYG--QPPDNWRLVVSDLADS---E 166 (280)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCT---TSEEEEECSCHHHHHHHHHHHHHHHT--SCCTTEEEECSCGGGC---C
T ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHhcC--CCCCcEEEEECchHhc---C
Confidence 35778999999999999999999997653 579999999999999999999875 2 0235788888766443 2
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.++..||+|+++++ +..++++++.++|||||++++.+.
T Consensus 167 ~~~~~~D~v~~~~~--------------~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVLDML--------------APWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEEESS--------------CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCceeEEEECCc--------------CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 23457999999842 223789999999999999998876
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=118.28 Aligned_cols=106 Identities=18% Similarity=0.118 Sum_probs=82.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++..++ ..+|+++|+++.+++.|++++...+ ..+++++.++.. .....
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~---~~~~~ 143 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGE---DGLVVSIERIPELAEKAERTLRKLG----YDNVIVIVGDGT---LGYEP 143 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCT---TSEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEESCGG---GCCGG
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcc---cCCCC
Confidence 4678899999999999999999998743 4799999999999999999998766 457888876653 22222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
...||+|+++... ++. .+++.++|||||++++.+..
T Consensus 144 ~~~fD~v~~~~~~---------~~~------~~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 144 LAPYDRIYTTAAG---------PKI------PEPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp GCCEEEEEESSBB---------SSC------CHHHHHTEEEEEEEEEEESS
T ss_pred CCCeeEEEECCch---------HHH------HHHHHHHcCCCcEEEEEECC
Confidence 3479999988422 111 14789999999999988763
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-15 Score=124.45 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=79.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..++++ +.+|+|+|+|+.|++.|++++.... .+..+...+.. ... ..
T Consensus 42 ~l~~g~~VLDlGcGtG~~a~~La~~------g~~V~gvD~S~~ml~~Ar~~~~~~~-----v~~~~~~~~~~-~~~--~~ 107 (261)
T 3iv6_A 42 NIVPGSTVAVIGASTRFLIEKALER------GASVTVFDFSQRMCDDLAEALADRC-----VTIDLLDITAE-IPK--EL 107 (261)
T ss_dssp TCCTTCEEEEECTTCHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTSSSC-----CEEEECCTTSC-CCG--GG
T ss_pred CCCCcCEEEEEeCcchHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHhcc-----ceeeeeecccc-ccc--cc
Confidence 5678899999999999999999987 4799999999999999999886531 12222211110 000 11
Q ss_pred CCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+.+||+|+++. +++ ..++...+++++.++| |||++++++..+
T Consensus 108 ~~~fD~Vv~~~---------~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 108 AGHFDFVLNDR---------LINRFTTEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp TTCCSEEEEES---------CGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred CCCccEEEEhh---------hhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 34799999983 333 2456678999999999 999999988754
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-14 Score=128.55 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=103.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|..+..+|+.++. .++|+++|+++.+++.+++|+++.+ ..++.+++.|..++....
T Consensus 102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~---~g~V~AvDis~~rl~~~~~n~~r~g----~~nv~v~~~Da~~l~~~~-- 172 (456)
T 3m4x_A 102 AAKPGEKVLDLCAAPGGKSTQLAAQMKG---KGLLVTNEIFPKRAKILSENIERWG----VSNAIVTNHAPAELVPHF-- 172 (456)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTT---CSEEEEECSSHHHHHHHHHHHHHHT----CSSEEEECCCHHHHHHHH--
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhhhc--
Confidence 3578999999999999999999998754 4799999999999999999999988 568999988887776433
Q ss_pred CCcEEEEEEeCCCCCCC----CCc---------eeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGG----DKS---------VITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~----d~~---------~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
+..||.|++|+++-... +.. +........++++++.++|||||+|+.+++.-.+ .+....+..++
T Consensus 173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~--eEne~vv~~~l 250 (456)
T 3m4x_A 173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP--EENEEIISWLV 250 (456)
T ss_dssp TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG--GGTHHHHHHHH
T ss_pred cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc--ccCHHHHHHHH
Confidence 24799999997642111 000 0011123458899999999999999887764332 33345566666
Q ss_pred HhCC
Q 041272 238 RSLS 241 (267)
Q Consensus 238 ~~l~ 241 (267)
+..+
T Consensus 251 ~~~~ 254 (456)
T 3m4x_A 251 ENYP 254 (456)
T ss_dssp HHSS
T ss_pred HhCC
Confidence 6543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=122.34 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=82.8
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE 166 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 166 (267)
++...++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++ .++.++.++..++.
T Consensus 43 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~~- 106 (263)
T 3pfg_A 43 LVRRHSPKAASLLDVACGTGMHLRHLADS------FGTVEGLELSADMLAIARRRN---------PDAVLHHGDMRDFS- 106 (263)
T ss_dssp HHHHHCTTCCEEEEETCTTSHHHHHHTTT------SSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTTCC-
T ss_pred HHHhhCCCCCcEEEeCCcCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhC---------CCCEEEECChHHCC-
Confidence 33344567789999999999999999987 368999999999999999864 35778876665432
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeec---hhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITT---SETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
. +..||+|+++.. ++++ +.+...+++++.++|||||++++..
T Consensus 107 --~-~~~fD~v~~~~~--------~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 107 --L-GRRFSAVTCMFS--------SIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp --C-SCCEEEEEECTT--------GGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred --c-cCCcCEEEEcCc--------hhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2 458999998731 2222 3567789999999999999999864
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=119.44 Aligned_cols=110 Identities=11% Similarity=0.138 Sum_probs=88.6
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC--
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP-- 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-- 169 (267)
..++.+|||+|||+|+.+..+++.++. +++|+++|+++++++.|+++++..+ ...+++++.++..+....+.
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~gda~~~l~~l~~~ 141 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPD---DGKITAIDFDREAYEIGLPFIRKAG---VEHKINFIESDAMLALDNLLQG 141 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCT---TCEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHS
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhc
Confidence 346779999999999999999998753 5899999999999999999998877 44679999988776533221
Q ss_pred --CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 --KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 --~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+...||+|+.+.. ......+++++.++|||||++++..
T Consensus 142 ~~~~~~fD~I~~d~~------------~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 142 QESEGSYDFGFVDAD------------KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp TTCTTCEEEEEECSC------------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCcCEEEECCc------------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 1347999998731 2456789999999999999998754
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=123.22 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=100.6
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|.++..+++..+ +.+++++|+ +.+++.|++++...+ ...+++++.++..+ ..+.
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~---~~~~- 247 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAP----HLRGTLVEL-AGPAERARRRFADAG---LADRVTVAEGDFFK---PLPV- 247 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTS---CCSC-
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCC----CCEEEEEeC-HHHHHHHHHHHHhcC---CCCceEEEeCCCCC---cCCC-
Confidence 45778999999999999999999853 589999999 999999999998766 34589999876542 2222
Q ss_pred CcEEEEEEeCCCCCCCCCceeechh--hHHHHHHHHHhcccCCcEEEEEEe--cCCCCC-hhhH---------------H
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSE--TTKMALEAAERILIPGGLISMVVY--VGHPGG-REEL---------------E 231 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~--~~~~~~-~~~~---------------~ 231 (267)
.||+|++.. ++++.+ ...++++++.++|||||++++.+. ...... .... .
T Consensus 248 -~~D~v~~~~---------vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (374)
T 1qzz_A 248 -TADVVLLSF---------VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVR 317 (374)
T ss_dssp -CEEEEEEES---------CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCC
T ss_pred -CCCEEEEec---------cccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCC
Confidence 499999873 444333 335899999999999999998876 321111 1000 0
Q ss_pred HHHHHHHhCCCCceEEEEEeeec
Q 041272 232 AVEAFARSLSVDDWICCKFQMLN 254 (267)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~ 254 (267)
...+|.+.+...+|++++.....
T Consensus 318 ~~~~~~~ll~~aGf~~~~~~~~~ 340 (374)
T 1qzz_A 318 TRDEVVDLAGSAGLALASERTSG 340 (374)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEEC
T ss_pred CHHHHHHHHHHCCCceEEEEECC
Confidence 22345555667789888877654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.2e-14 Score=128.02 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=100.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|..+..+|+.++. .++|+++|+|+.+++.+++|+++.+ ..++.++++|..++.... ...
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~---~g~V~avDis~~~l~~~~~n~~r~g----~~nv~~~~~D~~~~~~~~--~~~ 187 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNN---EGAILANEFSASRVKVLHANISRCG----ISNVALTHFDGRVFGAAV--PEM 187 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTT---CSEEEEECSSHHHHHHHHHHHHHHT----CCSEEEECCCSTTHHHHS--TTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCCHHHhhhhc--ccc
Confidence 8899999999999999999998753 4799999999999999999999887 468999988877665432 237
Q ss_pred EEEEEEeCCCCCC-----CCCceeec--------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhC
Q 041272 174 VRLVAFNLGYLPG-----GDKSVITT--------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240 (267)
Q Consensus 174 ~d~ii~~~~~lp~-----~d~~~~~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l 240 (267)
||.|++|+++... ......++ .....++++++.++|||||+++++++.-+.. +....+..+++..
T Consensus 188 fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~--Ene~vv~~~l~~~ 265 (479)
T 2frx_A 188 FDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQE--ENEAVCLWLKETY 265 (479)
T ss_dssp EEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSST--TTHHHHHHHHHHS
T ss_pred CCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcc--cCHHHHHHHHHHC
Confidence 9999999765211 10001111 1234688999999999999999887643332 2234455566554
Q ss_pred C
Q 041272 241 S 241 (267)
Q Consensus 241 ~ 241 (267)
+
T Consensus 266 ~ 266 (479)
T 2frx_A 266 P 266 (479)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-15 Score=125.80 Aligned_cols=148 Identities=18% Similarity=0.182 Sum_probs=88.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||||||+|.++..+++. + ..+|+|+|+|+.|++.|+++..+... ....++.++. ..++... .
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~-g----~~~V~gvDis~~ml~~a~~~~~~~~~-~~~~~~~~~~--~~~~~~~-----~ 103 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN-G----AKLVYALDVGTNQLAWKIRSDERVVV-MEQFNFRNAV--LADFEQG-----R 103 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-T----CSEEEEECSSCCCCCHHHHTCTTEEE-ECSCCGGGCC--GGGCCSC-----C
T ss_pred CCCEEEEEccCCCHHHHHHHhc-C----CCEEEEEcCCHHHHHHHHHhCccccc-cccceEEEeC--HhHcCcC-----C
Confidence 4679999999999999999987 3 25999999999999998876543210 0001111111 1122110 1
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCCh-------------hhHHHHHHHHHhC
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGR-------------EELEAVEAFARSL 240 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------------~~~~~~~~~~~~l 240 (267)
+|.+.++..++.. ..+++++.++|||||++++...+....+. .......++.+.+
T Consensus 104 ~d~~~~D~v~~~l------------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l 171 (232)
T 3opn_A 104 PSFTSIDVSFISL------------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTA 171 (232)
T ss_dssp CSEEEECCSSSCG------------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEhhhH------------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHH
Confidence 3445555322111 47999999999999999987422111111 1112344555556
Q ss_pred CCCceEEEEEeeecC----CCCceEEEeec
Q 041272 241 SVDDWICCKFQMLNR----PLAPVLVFLFK 266 (267)
Q Consensus 241 ~~~~~~~~~~~~~~~----~~~p~~~~~~k 266 (267)
...+|.+....+..- ++..+++..+|
T Consensus 172 ~~aGf~v~~~~~~pi~g~~gn~e~l~~~~~ 201 (232)
T 3opn_A 172 TQLGFSVKGLTFSPIKGGAGNVEFLVHLLK 201 (232)
T ss_dssp HHHTEEEEEEEECSSCBTTTBCCEEEEEEE
T ss_pred HHCCCEEEEEEEccCCCCCCCHHHHHHHhh
Confidence 667888877655332 24556666554
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=119.26 Aligned_cols=110 Identities=20% Similarity=0.216 Sum_probs=83.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccc-cccceEEEecChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA-EKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~ 169 (267)
.++++.+|||+|||+|..+..+++..+. ..+|+|+|+++.+++.|++++...+... ...+++++.++.... ..
T Consensus 74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~ 147 (226)
T 1i1n_A 74 QLHEGAKALDVGSGSGILTACFARMVGC---TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG---YA 147 (226)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCT---TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC---CG
T ss_pred hCCCCCEEEEEcCCcCHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC---cc
Confidence 4678899999999999999999998753 4699999999999999999988754000 035788888765432 22
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+..||+|+++... ..+++++.++|||||++++....
T Consensus 148 ~~~~fD~i~~~~~~---------------~~~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 148 EEAPYDAIHVGAAA---------------PVVPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp GGCCEEEEEECSBB---------------SSCCHHHHHTEEEEEEEEEEESC
T ss_pred cCCCcCEEEECCch---------------HHHHHHHHHhcCCCcEEEEEEec
Confidence 23479999988422 13457889999999999987763
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=123.05 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=83.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++. .++.++.++..++. . +
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~~---~-~ 115 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQS------GAEVLGTDNAATMIEKARQNY---------PHLHFDVADARNFR---V-D 115 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHC---------TTSCEEECCTTTCC---C-S
T ss_pred CCCCCEEEEecCCCCHHHHHHHhC------CCeEEEEECCHHHHHHHHhhC---------CCCEEEECChhhCC---c-C
Confidence 567889999999999999999983 479999999999999998864 35677776665432 2 3
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..||+|+++ .++++.++...+++++.++|||||++++..+.
T Consensus 116 ~~fD~v~~~---------~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 116 KPLDAVFSN---------AMLHWVKEPEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp SCEEEEEEE---------SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcCEEEEc---------chhhhCcCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 589999998 34555566789999999999999999987763
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=118.34 Aligned_cols=111 Identities=13% Similarity=0.209 Sum_probs=88.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~ 170 (267)
+.++.+|||+|||+|..+..+++.++. +.+|+++|+++.+++.|+++++..+ ...+++++.++..+... ....
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~i~~~~~d~~~~~~~~~~~ 140 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPA---DGRVVTCEVDAQPPELGRPLWRQAE---AEHKIDLRLKPALETLDELLAA 140 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCT---TCEEEEEESCSHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHT
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHCC---CCCeEEEEEcCHHHHHHHHHhc
Confidence 456789999999999999999998653 5799999999999999999998876 34689999888765432 2111
Q ss_pred C--CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 S--TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~--~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. ..||+|+++.. ......+++++.++|+|||++++...
T Consensus 141 ~~~~~~D~v~~d~~------------~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 141 GEAGTFDVAVVDAD------------KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp TCTTCEEEEEECSC------------STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCCccEEEECCC------------HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 1 47999999842 23446899999999999999988543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=115.83 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=84.7
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+.++.+|||+|||+|.++..+++. +.+|+++|+++++++.|+++....+ ...+++++..+..+ ...
T Consensus 87 ~~~~~~~~vldiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~---~~~ 154 (248)
T 2yvl_A 87 LNLNKEKRVLEFGTGSGALLAVLSEV------AGEVWTFEAVEEFYKTAQKNLKKFN---LGKNVKFFNVDFKD---AEV 154 (248)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHHHHTT---CCTTEEEECSCTTT---SCC
T ss_pred cCCCCCCEEEEeCCCccHHHHHHHHh------CCEEEEEecCHHHHHHHHHHHHHcC---CCCcEEEEEcChhh---ccc
Confidence 34678899999999999999999998 2799999999999999999998766 33678888766543 221
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
++..||+|+.+++ +...+++++.++|||||++++...
T Consensus 155 ~~~~~D~v~~~~~--------------~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 155 PEGIFHAAFVDVR--------------EPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp CTTCBSEEEECSS--------------CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred CCCcccEEEECCc--------------CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3347999999743 224789999999999999998876
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=120.25 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=80.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.|++++...+ ..+++++.++. ....+.
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~---~~~~~~ 155 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVK-----TDVYTIERIPELVEFAKRNLERAG----VKNVHVILGDG---SKGFPP 155 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHC-----SCEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCG---GGCCGG
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHHHcC----CCCcEEEECCc---ccCCCC
Confidence 467889999999999999999999852 689999999999999999998876 45688887665 122222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
...||+|+++... + .+.+++.++|||||++++.+..
T Consensus 156 ~~~fD~Ii~~~~~---------~------~~~~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 156 KAPYDVIIVTAGA---------P------KIPEPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp GCCEEEEEECSBB---------S------SCCHHHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEECCcH---------H------HHHHHHHHhcCCCcEEEEEEec
Confidence 3359999988421 1 1224788999999999998764
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=117.70 Aligned_cols=109 Identities=24% Similarity=0.337 Sum_probs=84.1
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|++++...+ .+++++..+..++. .
T Consensus 29 ~~~~~~~~vLdiG~G~G~~~~~l~~~-------~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~---~ 93 (243)
T 3d2l_A 29 EQVEPGKRIADIGCGTGTATLLLADH-------YEVTGVDLSEEMLEIAQEKAMETN-----RHVDFWVQDMRELE---L 93 (243)
T ss_dssp HHSCTTCEEEEESCTTCHHHHHHTTT-------SEEEEEESCHHHHHHHHHHHHHTT-----CCCEEEECCGGGCC---C
T ss_pred HHcCCCCeEEEecCCCCHHHHHHhhC-------CeEEEEECCHHHHHHHHHhhhhcC-----CceEEEEcChhhcC---C
Confidence 35677899999999999999998876 489999999999999999987754 56888877664432 2
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+ ..||+|+++...+. .....+...++++++.++|||||++++..
T Consensus 94 ~-~~fD~v~~~~~~~~-----~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 94 P-EPVDAITILCDSLN-----YLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp S-SCEEEEEECTTGGG-----GCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CCcCEEEEeCCchh-----hcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 2 57999998631100 01123667899999999999999998854
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-14 Score=121.34 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=84.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++..........+++++.+|..++.... .+.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-~~~ 168 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGT----VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-PDN 168 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-CTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCC----CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-cCC
Confidence 5678999999999999999998642 47999999999999999998743210012468999988876554321 234
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|+++... +..... .-...++++++.++|||||++++...
T Consensus 169 ~fDvIi~d~~~-~~~~~~----~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 169 TYDVVIIDTTD-PAGPAS----KLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp CEEEEEEECC--------------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ceeEEEECCCC-ccccch----hhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 79999998532 110000 00015899999999999999988754
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=124.86 Aligned_cols=124 Identities=12% Similarity=0.083 Sum_probs=90.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.+++.+|+. +.+|+|+|+|+++++.|++|++.++ .. ++++.++..++ ...
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~------~~~V~gvD~s~~ai~~A~~n~~~ng----l~-v~~~~~d~~~~---~~~- 352 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR------GFNVKGFDSNEFAIEMARRNVEINN----VD-AEFEVASDREV---SVK- 352 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHT----CC-EEEEECCTTTC---CCT-
T ss_pred cCCCCEEEEeeccchHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcC----Cc-EEEEECChHHc---Ccc-
Confidence 677889999999999999999987 3699999999999999999999877 34 88998776554 222
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (267)
.||+|++|++.-.. . ..+++.+. .|+|||++++++.+. .+..-+..+. |.+....
T Consensus 353 -~fD~Vv~dPPr~g~---~--------~~~~~~l~-~l~p~givyvsc~p~---------tlarDl~~l~---y~l~~~~ 407 (425)
T 2jjq_A 353 -GFDTVIVDPPRAGL---H--------PRLVKRLN-REKPGVIVYVSCNPE---------TFARDVKMLD---YRIDEIV 407 (425)
T ss_dssp -TCSEEEECCCTTCS---C--------HHHHHHHH-HHCCSEEEEEESCHH---------HHHHHHHHSS---CCEEEEE
T ss_pred -CCCEEEEcCCccch---H--------HHHHHHHH-hcCCCcEEEEECChH---------HHHhHHhhCe---EEEEEEE
Confidence 69999999653111 1 24555554 489999999987631 2222333443 7776666
Q ss_pred eecC
Q 041272 252 MLNR 255 (267)
Q Consensus 252 ~~~~ 255 (267)
.++.
T Consensus 408 ~~Dm 411 (425)
T 2jjq_A 408 ALDM 411 (425)
T ss_dssp EECC
T ss_pred EECc
Confidence 6655
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.9e-14 Score=126.85 Aligned_cols=141 Identities=19% Similarity=0.289 Sum_probs=100.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|..+..+++.++. .++|+|+|+++.+++.++++++..+ ..+++++.+|..++.... +
T Consensus 256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~---~~~v~a~D~s~~~l~~~~~~~~~~g----~~~v~~~~~D~~~~~~~~-~ 327 (450)
T 2yxl_A 256 DPKPGETVVDLAAAPGGKTTHLAELMKN---KGKIYAFDVDKMRMKRLKDFVKRMG----IKIVKPLVKDARKAPEII-G 327 (450)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTT---CSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCTTCCSSSS-C
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEEEcChhhcchhh-c
Confidence 4678899999999999999999998643 3799999999999999999999877 467899887765543222 2
Q ss_pred CCcEEEEEEeCCCCCCC-----CC--------ceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGG-----DK--------SVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~-----d~--------~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
+..||.|++|+++-... .. .+........++++++.++|||||+++++++.-.+ .+....+..++
T Consensus 328 ~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~--~ene~~v~~~l 405 (450)
T 2yxl_A 328 EEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK--EENEKNIRWFL 405 (450)
T ss_dssp SSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG--GGTHHHHHHHH
T ss_pred cCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh--hhHHHHHHHHH
Confidence 24799999986552111 00 00001112367899999999999999988764332 23334566677
Q ss_pred HhCC
Q 041272 238 RSLS 241 (267)
Q Consensus 238 ~~l~ 241 (267)
+..+
T Consensus 406 ~~~~ 409 (450)
T 2yxl_A 406 NVHP 409 (450)
T ss_dssp HHCS
T ss_pred HhCC
Confidence 6643
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.1e-14 Score=120.52 Aligned_cols=159 Identities=15% Similarity=0.122 Sum_probs=97.1
Q ss_pred HHhhHHHhhhcC-CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE-ec
Q 041272 82 IAANGVWKHVVR-KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF-NM 159 (267)
Q Consensus 82 ~~~~~l~~~~l~-~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~-~~ 159 (267)
.+...+....+. ++.+|||+|||||.++..+++. + ..+|+|||+|+.|++.+.++- .++... ..
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-g----a~~V~aVDvs~~mL~~a~r~~---------~rv~~~~~~ 137 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-G----AKLVYAVDVGTNQLVWKLRQD---------DRVRSMEQY 137 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEECSSSSCSCHHHHTC---------TTEEEECSC
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-C----CCEEEEEECCHHHHHHHHHhC---------cccceeccc
Confidence 333333333444 5779999999999999999987 2 369999999999999865432 122221 11
Q ss_pred ChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCC--------h----
Q 041272 160 CHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGG--------R---- 227 (267)
Q Consensus 160 ~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--------~---- 227 (267)
+...+.....+...||+++++..++. ...++.++.++|||||++++..-+....+ .
T Consensus 138 ni~~l~~~~l~~~~fD~v~~d~sf~s------------l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~ 205 (291)
T 3hp7_A 138 NFRYAEPVDFTEGLPSFASIDVSFIS------------LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRES 205 (291)
T ss_dssp CGGGCCGGGCTTCCCSEEEECCSSSC------------GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCH
T ss_pred CceecchhhCCCCCCCEEEEEeeHhh------------HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCH
Confidence 12222111111224899998854321 14799999999999999998743322111 1
Q ss_pred -hhHHHHHHHHHhCCCCceEEEEEeeecC----CCCceEEEeec
Q 041272 228 -EELEAVEAFARSLSVDDWICCKFQMLNR----PLAPVLVFLFK 266 (267)
Q Consensus 228 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~p~~~~~~k 266 (267)
......+++...+...+|.+....+..- ++..|++.+.|
T Consensus 206 ~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~gn~e~l~~~~~ 249 (291)
T 3hp7_A 206 SIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGHGNIEFLAHLEK 249 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGGGCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCcCHHHHHHhhh
Confidence 1123344455555566788766555332 37778877654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=116.28 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=83.6
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
..++...+.++.+|||+|||+|.++..+ + ..+|+|+|+|+.+++.|+++. .++.++.++..++
T Consensus 27 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l----~----~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~ 89 (211)
T 2gs9_A 27 ERALKGLLPPGESLLEVGAGTGYWLRRL----P----YPQKVGVEPSEAMLAVGRRRA---------PEATWVRAWGEAL 89 (211)
T ss_dssp HHHHHTTCCCCSEEEEETCTTCHHHHHC----C----CSEEEEECCCHHHHHHHHHHC---------TTSEEECCCTTSC
T ss_pred HHHHHHhcCCCCeEEEECCCCCHhHHhC----C----CCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcccccC
Confidence 3444445568889999999999998877 2 138999999999999999865 3567777665443
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..++.+||+|+++. ++++.++..++++++.++|||||.+++.++..
T Consensus 90 ---~~~~~~fD~v~~~~---------~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 90 ---PFPGESFDVVLLFT---------TLEFVEDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp ---CSCSSCEEEEEEES---------CTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred ---CCCCCcEEEEEEcC---------hhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 33455899999883 44444567899999999999999999988743
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=118.82 Aligned_cols=116 Identities=15% Similarity=0.178 Sum_probs=84.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcC-CCCCCcEEEEEeCChHHHHHHHHHHhhccccc-cccceEEEecChhhhhh-c
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVA-DESSAGCVYGLDIQSEALKSTSSLLDKTTSKA-EKGLVKLFNMCHSRMEE-I 167 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~-~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~-~~~~v~~~~~~~~~l~~-~ 167 (267)
.++++.+|||+|||+|.++..+++..+ ..+|..+|+|+|+++++++.|++++...+... ...+++++.++..+... .
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 467889999999999999999999864 00014699999999999999999998754000 03578888877654210 0
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.....+||+|+.+... + .+++++.++|||||++++....
T Consensus 157 ~~~~~~fD~I~~~~~~---------~------~~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 157 KKELGLFDAIHVGASA---------S------ELPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHCCEEEEEECSBB---------S------SCCHHHHHHEEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCch---------H------HHHHHHHHhcCCCcEEEEEEcc
Confidence 0123479999988422 1 2457889999999999998774
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=121.11 Aligned_cols=105 Identities=20% Similarity=0.182 Sum_probs=86.6
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+.++.+|||+|||+|.+++. |+. +.+|+|+|+|+.+++.|++|++.++ ...+++++++|..++.
T Consensus 191 ~~~~~~~~VLDlg~G~G~~~l~-a~~------~~~V~~vD~s~~ai~~a~~n~~~n~---l~~~v~~~~~D~~~~~---- 256 (336)
T 2yx1_A 191 KKVSLNDVVVDMFAGVGPFSIA-CKN------AKKIYAIDINPHAIELLKKNIKLNK---LEHKIIPILSDVREVD---- 256 (336)
T ss_dssp HHCCTTCEEEETTCTTSHHHHH-TTT------SSEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCGGGCC----
T ss_pred HhcCCCCEEEEccCccCHHHHh-ccC------CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECChHHhc----
Confidence 3456889999999999999999 873 4799999999999999999999987 3468999987775543
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
..||+|++|+++.. .++++.+.++|+|||++++.++...
T Consensus 257 --~~fD~Vi~dpP~~~-------------~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 257 --VKGNRVIMNLPKFA-------------HKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp --CCEEEEEECCTTTG-------------GGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred --CCCcEEEECCcHhH-------------HHHHHHHHHHcCCCCEEEEEEeecC
Confidence 47999999964321 2788999999999999998877544
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.7e-14 Score=122.70 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=83.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++..+. .++|+|+|+|+++++.|+++++..+ ..+++++.++..+. .+.
T Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~g----~~~v~~~~~d~~~~---~~~ 141 (317)
T 1dl5_A 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVERLG----IENVIFVCGDGYYG---VPE 141 (317)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGC---CGG
T ss_pred CCCCcCEEEEecCCchHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHHHHcC----CCCeEEEECChhhc---ccc
Confidence 5678999999999999999999998642 3679999999999999999998877 45688888776543 222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+.+||+|+++... ++.. +++.++|||||++++.+.+
T Consensus 142 ~~~fD~Iv~~~~~---------~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 142 FSPYDVIFVTVGV---------DEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp GCCEEEEEECSBB---------SCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred CCCeEEEEEcCCH---------HHHH------HHHHHhcCCCcEEEEEECC
Confidence 3479999998422 1111 5778899999999997653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-14 Score=124.14 Aligned_cols=112 Identities=21% Similarity=0.232 Sum_probs=83.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc----cc---ccccceEEEecChhh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT----SK---AEKGLVKLFNMCHSR 163 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~----~~---~~~~~v~~~~~~~~~ 163 (267)
.+.++.+|||+|||+|.++..+++.+++ ..+|+|+|+++.+++.|++++...+ .+ ....+++++.++..+
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~ 178 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGS---QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG 178 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTC
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHH
Confidence 5778999999999999999999998653 5899999999999999999987521 00 012578998877654
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+ ++..||+|+++++. +..+++++.++|||||++++...
T Consensus 179 ~~~~~-~~~~fD~V~~~~~~--------------~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 179 ATEDI-KSLTFDAVALDMLN--------------PHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp CC--------EEEEEECSSS--------------TTTTHHHHGGGEEEEEEEEEEES
T ss_pred ccccc-CCCCeeEEEECCCC--------------HHHHHHHHHHhcCCCcEEEEEeC
Confidence 42111 23469999998421 12478999999999999987665
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-15 Score=127.27 Aligned_cols=104 Identities=15% Similarity=0.119 Sum_probs=82.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.++ ...+++++++|..++. .+.
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~----~~~ 143 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT------GMRVIAIDIDPVKIALARNNAEVYG---IADKIEFICGDFLLLA----SFL 143 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHG----GGC
T ss_pred cCCCEEEECccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcC---CCcCeEEEECChHHhc----ccC
Confidence 37889999999999999999987 4799999999999999999999877 3368999998877664 234
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.||+|++++++... ......+.++.++|+|||++++.
T Consensus 144 ~~D~v~~~~~~~~~---------~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 144 KADVVFLSPPWGGP---------DYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp CCSEEEECCCCSSG---------GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred CCCEEEECCCcCCc---------chhhhHHHHHHhhcCCcceeHHH
Confidence 79999999654222 22223566788889999986543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=120.76 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=80.2
Q ss_pred HHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 82 IAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 82 ~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
.....++...++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++ ..++++++++.
T Consensus 36 ~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~d~ 100 (226)
T 3m33_A 36 LTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQ------AARWAAYDFSPELLKLARAN---------APHADVYEWNG 100 (226)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHH---------CTTSEEEECCS
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHh---------CCCceEEEcch
Confidence 3444455445678899999999999999999987 37999999999999999987 14678887665
Q ss_pred hhhhhcCCC-CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 162 SRMEEIVPK-STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 162 ~~l~~~~~~-~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
.+. ...+ +.+||+|+++. +...+++++.++|||||+++
T Consensus 101 ~~~--~~~~~~~~fD~v~~~~---------------~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 101 KGE--LPAGLGAPFGLIVSRR---------------GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp CSS--CCTTCCCCEEEEEEES---------------CCSGGGGGHHHHEEEEEEEE
T ss_pred hhc--cCCcCCCCEEEEEeCC---------------CHHHHHHHHHHHcCCCcEEE
Confidence 321 2222 45899999982 12378899999999999998
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=128.67 Aligned_cols=114 Identities=15% Similarity=0.050 Sum_probs=84.3
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHH-------HHHHhhcccccc-ccceEEEecCh
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST-------SSLLDKTTSKAE-KGLVKLFNMCH 161 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a-------~~~~~~~~~~~~-~~~v~~~~~~~ 161 (267)
..+.++.+|||||||+|.++..+|+..+. .+|+|||+++.+++.| ++++...+ . ..++++++++.
T Consensus 238 l~l~~g~~VLDLGCGsG~la~~LA~~~g~----~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G---l~~~nV~~i~gD~ 310 (433)
T 1u2z_A 238 CQLKKGDTFMDLGSGVGNCVVQAALECGC----ALSFGCEIMDDASDLTILQYEELKKRCKLYG---MRLNNVEFSLKKS 310 (433)
T ss_dssp TTCCTTCEEEEESCTTSHHHHHHHHHHCC----SEEEEEECCHHHHHHHHHHHHHHHHHHHHTT---BCCCCEEEEESSC
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHCCC----CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC---CCCCceEEEEcCc
Confidence 35678999999999999999999998653 6899999999999999 88887765 2 26888887532
Q ss_pred h-hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 162 S-RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 162 ~-~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. +...+......||+|+++.. . ..++..++++++.+.|||||++++...
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~---------l-~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNF---------L-FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCT---------T-CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred cccccccccccCCCCEEEEeCc---------c-ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 2 10001001236899998621 1 124556789999999999999988754
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-13 Score=119.19 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=88.9
Q ss_pred cCC-CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 92 VRK-GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 92 l~~-~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
+.+ +.+|||+|||+|.++..+++..+ +.+++++|+ +.+++.|++++...+ ...+++++.++..+.....+
T Consensus 176 ~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~- 246 (352)
T 3mcz_A 176 VFARARTVIDLAGGHGTYLAQVLRRHP----QLTGQIWDL-PTTRDAARKTIHAHD---LGGRVEFFEKNLLDARNFEG- 246 (352)
T ss_dssp GGTTCCEEEEETCTTCHHHHHHHHHCT----TCEEEEEEC-GGGHHHHHHHHHHTT---CGGGEEEEECCTTCGGGGTT-
T ss_pred CcCCCCEEEEeCCCcCHHHHHHHHhCC----CCeEEEEEC-HHHHHHHHHHHHhcC---CCCceEEEeCCcccCcccCC-
Confidence 345 78999999999999999999854 589999999 889999999998766 45679999877654432222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..||+|++. .++|+. +...++++++.+.|||||++++.+...
T Consensus 247 -~~~D~v~~~---------~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (352)
T 3mcz_A 247 -GAADVVMLN---------DCLHYFDAREAREVIGHAAGLVKPGGALLILTMTM 290 (352)
T ss_dssp -CCEEEEEEE---------SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred -CCccEEEEe---------cccccCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 359999987 344433 345899999999999999999987643
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-14 Score=125.21 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=85.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..+++. + ..+|+|+|+|+ +++.|+++++.++ ...+++++.++..++ ..++
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g----~~~v~gvD~s~-~l~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~~~ 131 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-G----ARKVIGIECSS-ISDYAVKIVKANK---LDHVVTIIKGKVEEV---ELPV 131 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-T----CSEEEEEECST-HHHHHHHHHHHTT---CTTTEEEEESCTTTC---CCSS
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-C----CCEEEEECcHH-HHHHHHHHHHHcC---CCCcEEEEECcHHHc---cCCC
Confidence 457899999999999999999987 3 36999999995 9999999999887 455699998777555 2334
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
.+||+|+++... ...........+++++.++|||||+++.
T Consensus 132 ~~fD~Iis~~~~------~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 132 EKVDIIISEWMG------YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp SCEEEEEECCCB------BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CceEEEEEcccc------ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 589999997411 1122334567899999999999999864
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-14 Score=121.81 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=81.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeC-ChHHHHHHHHHHh-----hccccccc----cceEEEecCh
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI-QSEALKSTSSLLD-----KTTSKAEK----GLVKLFNMCH 161 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~-s~~~i~~a~~~~~-----~~~~~~~~----~~v~~~~~~~ 161 (267)
+.++.+|||+|||+|.+++.+++. + ..+|+|+|+ |+.+++.|++|+. .++ .. .+++++..+.
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~-~----~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~---~~~~~~~~v~~~~~~~ 148 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLA-G----ADQVVATDYPDPEILNSLESNIREHTANSCS---SETVKRASPKVVPYRW 148 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHT-T----CSEEEEEECSCHHHHHHHHHHHHTTCC-------------CCCEEEECCT
T ss_pred hcCCCeEEEecccccHHHHHHHHc-C----CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcc---cccCCCCCeEEEEecC
Confidence 357889999999999999999886 2 259999999 8999999999994 333 11 3677775443
Q ss_pred hhh-hhcCC--CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhccc---C--CcEEEEEEe
Q 041272 162 SRM-EEIVP--KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI---P--GGLISMVVY 220 (267)
Q Consensus 162 ~~l-~~~~~--~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lk---p--gG~l~i~~~ 220 (267)
.+. ..... .+..||+|++. .+.++.+....+++.+.++|| | ||+++++..
T Consensus 149 ~~~~~~~~~~~~~~~fD~Ii~~---------dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 149 GDSPDSLQRCTGLQRFQVVLLA---------DLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp TSCTHHHHHHHSCSSBSEEEEE---------SCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred CCccHHHHhhccCCCCCEEEEe---------CcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 331 11110 23479999875 245556777899999999999 9 999877654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-13 Score=118.08 Aligned_cols=109 Identities=11% Similarity=0.087 Sum_probs=87.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|..+..+++..+ +.+++++|++ .+++.|++++...+ ...+++++.++..+. ..++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~~-~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~~~- 231 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNP----NAEIFGVDWA-SVLEVAKENARIQG---VASRYHTIAGSAFEV---DYGN- 231 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCT----TCEEEEEECH-HHHHHHHHHHHHHT---CGGGEEEEESCTTTS---CCCS-
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCC----CCeEEEEecH-HHHHHHHHHHHhcC---CCcceEEEecccccC---CCCC-
Confidence 6778999999999999999999863 5899999999 99999999998766 345799998765433 1222
Q ss_pred cEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.||+|++. .+.++. +...++++++.++|||||++++.+...
T Consensus 232 ~~D~v~~~---------~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 232 DYDLVLLP---------NFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp CEEEEEEE---------SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCcEEEEc---------chhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 49999987 244433 456799999999999999999987644
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=127.87 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=85.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|++++..++ ..++++.++..+ .. +.
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~~~~~~d~~~---~~--~~ 260 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSP----KIRLTLCDVSAPAVEASRATLAANG-----VEGEVFASNVFS---EV--KG 260 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCT----TCBCEEEESBHHHHHHHHHHHHHTT-----CCCEEEECSTTT---TC--CS
T ss_pred CCCCeEEEecCccCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHhC-----CCCEEEEccccc---cc--cC
Confidence 4567999999999999999998843 4799999999999999999998866 235566554432 22 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.||+|+++.++... .........++++++.++|||||.++++...
T Consensus 261 ~fD~Iv~~~~~~~g----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 261 RFDMIISNPPFHDG----MQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CEEEEEECCCCCSS----SHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred CeeEEEECCCcccC----ccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 79999999643111 1113456689999999999999999998763
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-14 Score=123.70 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=84.5
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..+++. + ..+|+|+|+|+ |++.|+++++.++ ...+++++.++..++ ..++
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g----~~~v~gvD~s~-~~~~a~~~~~~~~---~~~~i~~~~~d~~~~---~~~~ 129 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-G----AKKVLGVDQSE-ILYQAMDIIRLNK---LEDTITLIKGKIEEV---HLPV 129 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEEESST-HHHHHHHHHHHTT---CTTTEEEEESCTTTS---CCSC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-C----CCEEEEEChHH-HHHHHHHHHHHcC---CCCcEEEEEeeHHHh---cCCC
Confidence 567889999999999999999987 2 36999999997 9999999998877 347899998776544 2334
Q ss_pred CcEEEEEEeC-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 172 TAVRLVAFNL-GYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 172 ~~~d~ii~~~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
.+||+|+++. ++ ..........+++++.++|||||+++
T Consensus 130 ~~~D~Ivs~~~~~-------~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 130 EKVDVIISEWMGY-------FLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCEEEEEECCCBT-------TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CcEEEEEEcCchh-------hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 5799999984 22 12233456789999999999999997
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=121.09 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=82.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. +++++.++..++ ..++
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~d~~~~---~~~~ 92 (261)
T 3ege_A 32 LPKGSVIADIGAGTGGYSVALANQ------GLFVYAVEPSIVMRQQAVVHP----------QVEWFTGYAENL---ALPD 92 (261)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHTT------TCEEEEECSCHHHHHSSCCCT----------TEEEECCCTTSC---CSCT
T ss_pred CCCCCEEEEEcCcccHHHHHHHhC------CCEEEEEeCCHHHHHHHHhcc----------CCEEEECchhhC---CCCC
Confidence 467899999999999999999974 579999999999999887632 688888766443 3344
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+||+|++. .++++.++...+++++.++|| ||++++.++.
T Consensus 93 ~~fD~v~~~---------~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 93 KSVDGVISI---------LAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp TCBSEEEEE---------SCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred CCEeEEEEc---------chHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 689999998 345555777899999999999 9988888764
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=123.02 Aligned_cols=87 Identities=6% Similarity=0.093 Sum_probs=68.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh-hhhcCCC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR-MEEIVPK-- 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~~-- 170 (267)
++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.|++.|+++++.++ ...++++++++..+ +.+.+..
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~ 137 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN----GWYFLATEVDDMCFNYAKKNVEQNN---LSDLIKVVKVPQKTLLMDALKEES 137 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH----CCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTCSSTTTSTTCC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHHcC---CCccEEEEEcchhhhhhhhhhccc
Confidence 577999999999999999998753 3799999999999999999998877 34569999887655 3333322
Q ss_pred CCcEEEEEEeCCCCCCC
Q 041272 171 STAVRLVAFNLGYLPGG 187 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~ 187 (267)
+..||+|++|++|....
T Consensus 138 ~~~fD~i~~npp~~~~~ 154 (254)
T 2h00_A 138 EIIYDFCMCNPPFFANQ 154 (254)
T ss_dssp SCCBSEEEECCCCC---
T ss_pred CCcccEEEECCCCccCc
Confidence 24799999999886543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=119.76 Aligned_cols=140 Identities=12% Similarity=0.072 Sum_probs=101.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+..+|||+|||+|..+..+++..+ +.+++++|+ +.+++.|++++...+ ...+++++.++.. +..+.
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~---~~~p~-- 234 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHE----DLSGTVLDL-QGPASAAHRRFLDTG---LSGRAQVVVGSFF---DPLPA-- 234 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTT---SCCCC--
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCC----CCeEEEecC-HHHHHHHHHhhhhcC---cCcCeEEecCCCC---CCCCC--
Confidence 3567999999999999999999854 589999999 999999999998766 3578999986653 22222
Q ss_pred cEEEEEEeCCCCCCCCCceeechhh--HHHHHHHHHhcccCCcEEEEEEecCCCCCh---hhH----------HHHHHHH
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSET--TKMALEAAERILIPGGLISMVVYVGHPGGR---EEL----------EAVEAFA 237 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~----------~~~~~~~ 237 (267)
.||+|++. .++|+.++ ..++++++++.|||||++++.+........ .+. ....+|.
T Consensus 235 ~~D~v~~~---------~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 305 (332)
T 3i53_A 235 GAGGYVLS---------AVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELG 305 (332)
T ss_dssp SCSEEEEE---------SCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHH
T ss_pred CCcEEEEe---------hhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHH
Confidence 68999887 34443333 589999999999999999998764332110 000 0123455
Q ss_pred HhCCCCceEEEEEeeec
Q 041272 238 RSLSVDDWICCKFQMLN 254 (267)
Q Consensus 238 ~~l~~~~~~~~~~~~~~ 254 (267)
+.+...+|+.++.....
T Consensus 306 ~ll~~aGf~~~~~~~~~ 322 (332)
T 3i53_A 306 ELAAQAGLAVRAAHPIS 322 (332)
T ss_dssp HHHHHTTEEEEEEEECS
T ss_pred HHHHHCCCEEEEEEECC
Confidence 55666789988876653
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-13 Score=123.26 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=99.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..+++.+|||+|||+|..+..+++..+ +++|+|+|+++.+++.++++++..+ .+++++.+|..++.....
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~----~~~v~a~D~~~~~l~~~~~~~~~~g-----~~~~~~~~D~~~~~~~~~- 312 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAP----EAQVVAVDIDEQRLSRVYDNLKRLG-----MKATVKQGDGRYPSQWCG- 312 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCT----TCEEEEEESSTTTHHHHHHHHHHTT-----CCCEEEECCTTCTHHHHT-
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcC----CCEEEEECCCHHHHHHHHHHHHHcC-----CCeEEEeCchhhchhhcc-
Confidence 356889999999999999999999864 3799999999999999999999877 247788877765543222
Q ss_pred CCcEEEEEEeCCCCCCCC----Cce---------eechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGGD----KSV---------ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d----~~~---------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
+..||.|++|+++....- ... ........++++++.++|||||+++++++.-.+ .+....+..++
T Consensus 313 ~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~--~ene~~v~~~l 390 (429)
T 1sqg_A 313 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP--EENSLQIKAFL 390 (429)
T ss_dssp TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG--GGTHHHHHHHH
T ss_pred cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh--hhHHHHHHHHH
Confidence 247999999976522110 000 001122368899999999999999988763322 23334566677
Q ss_pred HhCC
Q 041272 238 RSLS 241 (267)
Q Consensus 238 ~~l~ 241 (267)
+..+
T Consensus 391 ~~~~ 394 (429)
T 1sqg_A 391 QRTA 394 (429)
T ss_dssp HHCT
T ss_pred HhCC
Confidence 6543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-14 Score=119.05 Aligned_cols=110 Identities=20% Similarity=0.150 Sum_probs=82.6
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
..++...++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++... + ++.++..++
T Consensus 45 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~--------~--~~~~d~~~~ 108 (260)
T 2avn_A 45 GSFLEEYLKNPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKGVK--------N--VVEAKAEDL 108 (260)
T ss_dssp HHHHHHHCCSCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHTCS--------C--EEECCTTSC
T ss_pred HHHHHHhcCCCCeEEEeCCCcCHHHHHHHHc------CCeEEEEeCCHHHHHHHHhhcCC--------C--EEECcHHHC
Confidence 3344444557889999999999999999987 36899999999999999987531 2 455444333
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..++..||+|++.. .+.+..++...+++++.++|||||++++..+.
T Consensus 109 ---~~~~~~fD~v~~~~--------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 109 ---PFPSGAFEAVLALG--------DVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp ---CSCTTCEEEEEECS--------SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ---CCCCCCEEEEEEcc--------hhhhccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 23355899999862 12333345789999999999999999988763
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=122.09 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=85.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..+++.. |+.+++++|+ +.+++.|+++++..+ ...+++++.++..+. ..++
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~~~ 256 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHF----PELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE---SYPE 256 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHC----TTCEEEEEEC-GGGHHHHHHHHHHTT---CTTTEEEEECCTTTS---CCCC
T ss_pred CCCCCEEEEECCcccHHHHHHHHHC----CCCeEEEEec-HHHHHHHHHHHHhcC---CCCCEEEEeCccccC---CCCC
Confidence 4677899999999999999999985 3589999999 999999999998766 345699998766443 2222
Q ss_pred CcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.|+|++. .++++. +...++++++.++|||||++++.+..
T Consensus 257 --~D~v~~~---------~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~ 297 (359)
T 1x19_A 257 --ADAVLFC---------RILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 297 (359)
T ss_dssp --CSEEEEE---------SCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred --CCEEEEe---------chhccCCHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 3888887 244433 33789999999999999999988754
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=122.06 Aligned_cols=112 Identities=9% Similarity=0.008 Sum_probs=86.9
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+..+|||||||+|..+..+++.. |+.+++++|+ +.+++.|++++...+ ...+++++.+|..+....++ .
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~p--~ 247 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN----KEVEVTIVDL-PQQLEMMRKQTAGLS---GSERIHGHGANLLDRDVPFP--T 247 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS----TTCEEEEEEC-HHHHHHHHHHHTTCT---TGGGEEEEECCCCSSSCCCC--C
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC----CCCEEEEEeC-HHHHHHHHHHHHhcC---cccceEEEEccccccCCCCC--C
Confidence 456799999999999999999985 4589999999 999999999998766 34689999876543210112 3
Q ss_pred cEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 173 AVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
.||+|++. .++|+ .+...++++++.+.|||||++++.+....
T Consensus 248 ~~D~v~~~---------~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (363)
T 3dp7_A 248 GFDAVWMS---------QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWD 291 (363)
T ss_dssp CCSEEEEE---------SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred CcCEEEEe---------chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccC
Confidence 68999887 24442 34456899999999999999999876443
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=124.99 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=79.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++-.. .....+..+ +......++
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~------g~~v~gvD~s~~~~~~a~~~~~~------~~~~~~~~~---~~~~l~~~~ 169 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEA------GVRHLGFEPSSGVAAKAREKGIR------VRTDFFEKA---TADDVRRTE 169 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHT------TCEEEEECCCHHHHHHHHTTTCC------EECSCCSHH---HHHHHHHHH
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc------CCcEEEECCCHHHHHHHHHcCCC------cceeeechh---hHhhcccCC
Confidence 467889999999999999999986 46999999999999999886111 011112222 222222223
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+||+|+++ .++++.+++..+++++.++|||||++++...
T Consensus 170 ~~fD~I~~~---------~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 170 GPANVIYAA---------NTLCHIPYVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp CCEEEEEEE---------SCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEEEEEEC---------ChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 579999998 4666667889999999999999999999765
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-14 Score=117.04 Aligned_cols=112 Identities=14% Similarity=0.228 Sum_probs=82.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCC--CCCCcEEEEEeCChHHHHHHHHHHhhcccc-ccccceEEEecChhhhhhc
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVAD--ESSAGCVYGLDIQSEALKSTSSLLDKTTSK-AEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~--~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~ 167 (267)
.++++.+|||+|||+|.++..+++..+. ..+..+|+++|+++++++.|++++...+.. ....+++++.++..+ .
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---~ 157 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK---G 157 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG---C
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc---C
Confidence 4678899999999999999999987531 000148999999999999999998764300 003578888876644 2
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+....||+|+.+... + .+++++.++|||||++++...
T Consensus 158 ~~~~~~fD~I~~~~~~---------~------~~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 158 YPPNAPYNAIHVGAAA---------P------DTPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp CGGGCSEEEEEECSCB---------S------SCCHHHHHTEEEEEEEEEEES
T ss_pred CCcCCCccEEEECCch---------H------HHHHHHHHHhcCCCEEEEEEe
Confidence 2223479999988422 1 233788999999999998876
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=115.28 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=82.8
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE 166 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 166 (267)
++...+.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++. .+++++.++..++.
T Consensus 33 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~------~~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~~- 96 (239)
T 3bxo_A 33 LVRSRTPEASSLLDVACGTGTHLEHFTKEF------GDTAGLELSEDMLTHARKRL---------PDATLHQGDMRDFR- 96 (239)
T ss_dssp HHHHHCTTCCEEEEETCTTSHHHHHHHHHH------SEEEEEESCHHHHHHHHHHC---------TTCEEEECCTTTCC-
T ss_pred HHHHhcCCCCeEEEecccCCHHHHHHHHhC------CcEEEEeCCHHHHHHHHHhC---------CCCEEEECCHHHcc-
Confidence 333345678899999999999999999883 48999999999999998864 35777776664432
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceee---chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVIT---TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
. +..||+|++... +++ .+++..++++++.++|||||++++..+.
T Consensus 97 --~-~~~~D~v~~~~~--------~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 97 --L-GRKFSAVVSMFS--------SVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp --C-SSCEEEEEECTT--------GGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred --c-CCCCcEEEEcCc--------hHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 2 457999996421 222 2366789999999999999999987653
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-13 Score=116.01 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=83.7
Q ss_pred CCCEEEEecCCC---ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh-----
Q 041272 94 KGDTVVDATCGN---GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME----- 165 (267)
Q Consensus 94 ~~~~VLDlGcG~---G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~----- 165 (267)
+..+|||||||+ |.++..+++.. |+.+|+++|+|+.|++.|++++.. ..+++++++|..+..
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~----p~~~v~~vD~sp~~l~~Ar~~~~~------~~~v~~~~~D~~~~~~~~~~ 146 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVN----PDARVVYVDIDPMVLTHGRALLAK------DPNTAVFTADVRDPEYILNH 146 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHC----TTCEEEEEESSHHHHHHHHHHHTT------CTTEEEEECCTTCHHHHHHS
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhC----CCCEEEEEECChHHHHHHHHhcCC------CCCeEEEEeeCCCchhhhcc
Confidence 347999999999 98887766653 358999999999999999998854 357899998876542
Q ss_pred ----hcCCCCCcEEEEEEeCCCCCCCCCceeechh--hHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 166 ----EIVPKSTAVRLVAFNLGYLPGGDKSVITTSE--TTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 166 ----~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..+.. ..+|+++++. ++|+.+ ....+++++.++|||||+|++.....
T Consensus 147 ~~~~~~~d~-~~~d~v~~~~---------vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 147 PDVRRMIDF-SRPAAIMLVG---------MLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHHHHCCT-TSCCEEEETT---------TGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred chhhccCCC-CCCEEEEEec---------hhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 11221 2688888873 344322 36799999999999999999998754
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-12 Score=117.14 Aligned_cols=139 Identities=13% Similarity=0.065 Sum_probs=103.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..+++.. |+.+++++|+ +.+++.|++++...+ ...+++++.++.. +..+.
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~~~~~~~---l~~~v~~~~~d~~---~~~p~- 267 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAF----PGLRGTLLER-PPVAEEARELLTGRG---LADRCEILPGDFF---ETIPD- 267 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHC----TTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTT---TCCCS-
T ss_pred CccCcEEEEeCCCccHHHHHHHHHC----CCCeEEEEcC-HHHHHHHHHhhhhcC---cCCceEEeccCCC---CCCCC-
Confidence 4567899999999999999999985 4589999999 999999999998766 4578999987654 22222
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhh--HHHHHHHHHhcccCCcEEEEEEecCCCCChhh-----H----------HHHH
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSET--TKMALEAAERILIPGGLISMVVYVGHPGGREE-----L----------EAVE 234 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----~----------~~~~ 234 (267)
.||+|++. .+++..++ ..++++++.+.|||||++++.+.......... . ....
T Consensus 268 -~~D~v~~~---------~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~ 337 (369)
T 3gwz_A 268 -GADVYLIK---------HVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSES 337 (369)
T ss_dssp -SCSEEEEE---------SCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHH
T ss_pred -CceEEEhh---------hhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHH
Confidence 68999887 34443333 35899999999999999999886543322111 0 0134
Q ss_pred HHHHhCCCCceEEEEEee
Q 041272 235 AFARSLSVDDWICCKFQM 252 (267)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~ 252 (267)
+|.+.+...+|++++...
T Consensus 338 e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 338 EFAALLEKSGLRVERSLP 355 (369)
T ss_dssp HHHHHHHTTTEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEEE
Confidence 566667778999888765
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-13 Score=117.09 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=98.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+++|++|||+|||+|..+..+|+.++. .++|+++|+++.+++.+++|+++.+ ..+++++.+|..++......
T Consensus 99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~---~g~V~a~D~~~~~l~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~ 171 (309)
T 2b9e_A 99 DPPPGSHVIDACAAPGNKTSHLAALLKN---QGKIFAFDLDAKRLASMATLLARAG----VSCCELAEEDFLAVSPSDPR 171 (309)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGSCTTCGG
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCChHhcCccccc
Confidence 4678999999999999999999998753 5799999999999999999999987 46899998877655332111
Q ss_pred CCcEEEEEEeCCCCCCC------CCc---------eeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGG------DKS---------VITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEA 235 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~------d~~---------~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 235 (267)
...||.|+.|+++-... |.. +........++|+.+.++|+ ||+++.+++.-+ ..+....+..
T Consensus 172 ~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~--~~Ene~~v~~ 248 (309)
T 2b9e_A 172 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC--QEENEDVVRD 248 (309)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC--GGGTHHHHHH
T ss_pred cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC--hHHhHHHHHH
Confidence 13699999997662211 100 00011233578888988887 998877665322 2233445666
Q ss_pred HHHhCC
Q 041272 236 FARSLS 241 (267)
Q Consensus 236 ~~~~l~ 241 (267)
+++..+
T Consensus 249 ~l~~~~ 254 (309)
T 2b9e_A 249 ALQQNP 254 (309)
T ss_dssp HHTTST
T ss_pred HHHhCC
Confidence 666543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=131.84 Aligned_cols=119 Identities=13% Similarity=0.075 Sum_probs=94.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccc-cceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK-GLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~ 171 (267)
.+|.+|||+|||+|.+++.++.. + ..+|+++|+|+.+++.|++|++.++ .. .+++++++|..++.... .
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~-g----a~~V~aVD~s~~al~~a~~N~~~ng---l~~~~v~~i~~D~~~~l~~~--~ 607 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLG-G----ARSTTTVDMSRTYLEWAERNLRLNG---LTGRAHRLIQADCLAWLREA--N 607 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHHHHTT---CCSTTEEEEESCHHHHHHHC--C
T ss_pred cCCCcEEEeeechhHHHHHHHHC-C----CCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEEecCHHHHHHhc--C
Confidence 46889999999999999999974 2 3579999999999999999999988 33 48999998887754433 3
Q ss_pred CcEEEEEEeCCCCCCCCCc--eeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKS--VITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..||+|++|+++....... .......+.++++.+.++|||||++++++..
T Consensus 608 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 608 EQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4799999998875543321 2334567789999999999999999987764
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-14 Score=124.50 Aligned_cols=108 Identities=18% Similarity=0.261 Sum_probs=85.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..+++. + ..+|+|+|+| .|++.|+++++.++ ...+++++.++..++. .+
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g----~~~V~gvD~s-~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~- 127 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-G----ARKVYAVEAT-KMADHARALVKANN---LDHIVEVIEGSVEDIS---LP- 127 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-T----CSEEEEEESS-TTHHHHHHHHHHTT---CTTTEEEEESCGGGCC---CS-
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-C----CCEEEEEccH-HHHHHHHHHHHHcC---CCCeEEEEECchhhcC---cC-
Confidence 467889999999999999999987 2 2599999999 99999999999887 4567999987775543 22
Q ss_pred CcEEEEEEeC-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 172 TAVRLVAFNL-GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+||+|+++. ++.. ........+++++.++|||||++++..
T Consensus 128 ~~~D~Iv~~~~~~~l-------~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 128 EKVDVIISEWMGYFL-------LRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp SCEEEEEECCCBTTB-------TTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred CcceEEEEcChhhcc-------cchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 5799999974 2211 112345689999999999999997643
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-13 Score=116.86 Aligned_cols=117 Identities=14% Similarity=0.101 Sum_probs=85.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc--cccccccceEEEecChhhhhhcCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT--TSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
...+.+|||||||+|.++..++++.+ ..+|+++|+|+.+++.|++++... + ....+++++.+|..+......
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~----~~~V~~VDis~~~l~~Ar~~~~~~~~g--l~~~rv~~~~~D~~~~l~~~~ 191 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHAS----IEQIDMCEIDKMVVDVSKQFFPDVAIG--YEDPRVNLVIGDGVAFLKNAA 191 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGG--GGSTTEEEEESCHHHHHHTSC
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHHHhhccc--cCCCcEEEEECCHHHHHHhcc
Confidence 35668999999999999999998743 479999999999999999998753 2 013689999888765433222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..||+|+++... |.. . .......++++++.++|||||++++...
T Consensus 192 -~~~fDlIi~d~~~-p~~--~--~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 236 (334)
T 1xj5_A 192 -EGSYDAVIVDSSD-PIG--P--AKELFEKPFFQSVARALRPGGVVCTQAE 236 (334)
T ss_dssp -TTCEEEEEECCCC-TTS--G--GGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred -CCCccEEEECCCC-ccC--c--chhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 3479999998531 110 0 0001136899999999999999988643
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=112.01 Aligned_cols=101 Identities=21% Similarity=0.207 Sum_probs=79.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++...+ +++++.++..+ ..+.
T Consensus 67 ~~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~------~v~~~~~d~~~---~~~~ 131 (231)
T 1vbf_A 67 DLHKGQKVLEIGTGIGYYTALIAEI------VDKVVSVEINEKMYNYASKLLSYYN------NIKLILGDGTL---GYEE 131 (231)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTCS------SEEEEESCGGG---CCGG
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHH------cCEEEEEeCCHHHHHHHHHHHhhcC------CeEEEECCccc---cccc
Confidence 4678899999999999999999987 3689999999999999999887632 78888876654 1222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+.+||+|+++.. .++ +.+++.++|||||++++....
T Consensus 132 ~~~fD~v~~~~~---------~~~------~~~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 132 EKPYDRVVVWAT---------APT------LLCKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp GCCEEEEEESSB---------BSS------CCHHHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEECCc---------HHH------HHHHHHHHcCCCcEEEEEEcC
Confidence 357999998842 221 124688999999999988763
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.6e-13 Score=116.93 Aligned_cols=142 Identities=14% Similarity=0.124 Sum_probs=101.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..+++..+ +.+++++|+ +.+++.|++++...+ ...+++++.++..+ ..+.
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~---~~~~- 248 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAP----HVSATVLEM-AGTVDTARSYLKDEG---LSDRVDVVEGDFFE---PLPR- 248 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-TTHHHHHHHHHHHTT---CTTTEEEEECCTTS---CCSS-
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCC----CCEEEEecC-HHHHHHHHHHHHhcC---CCCceEEEeCCCCC---CCCC-
Confidence 45678999999999999999999853 589999999 999999999998866 34589999876532 2222
Q ss_pred CcEEEEEEeCCCCCCCCCceeechh--hHHHHHHHHHhcccCCcEEEEEEec-CC-CCChhhHH---------------H
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSE--TTKMALEAAERILIPGGLISMVVYV-GH-PGGREELE---------------A 232 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~-~~-~~~~~~~~---------------~ 232 (267)
.||++++.. ++++.+ ...++++++.++|||||++++.+.. .. ........ .
T Consensus 249 -~~D~v~~~~---------vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 318 (360)
T 1tw3_A 249 -KADAIILSF---------VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRT 318 (360)
T ss_dssp -CEEEEEEES---------CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCB
T ss_pred -CccEEEEcc---------cccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCC
Confidence 499998872 443332 3368999999999999999998764 11 11111000 1
Q ss_pred HHHHHHhCCCCceEEEEEeeecC
Q 041272 233 VEAFARSLSVDDWICCKFQMLNR 255 (267)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~ 255 (267)
...|.+.+...+|.++.......
T Consensus 319 ~~e~~~ll~~aGf~~~~~~~~~~ 341 (360)
T 1tw3_A 319 REKWDGLAASAGLVVEEVRQLPS 341 (360)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEEeCCC
Confidence 23444555567898887766643
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-13 Score=114.97 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=83.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..+.+|||+|||+|..+..++++.+ ..+|+++|+++.+++.|++++...+......+++++.+|..+..... ..
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~ 162 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDS----VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF--KN 162 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT----CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC--SS
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCC----CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CC
Confidence 4568999999999999999998743 47999999999999999999864210001368999988876543322 34
Q ss_pred cEEEEEEeCCCCC-CCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLP-GGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp-~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|++++.. | ... ...-...++++++.++|||||++++...
T Consensus 163 ~fD~Ii~d~~~-~~~~~----~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 163 EFDVIIIDSTD-PTAGQ----GGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp CEEEEEEEC---------------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CceEEEEcCCC-cccCc----hhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 79999998532 1 000 0000226899999999999999988654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-12 Score=115.26 Aligned_cols=139 Identities=15% Similarity=0.114 Sum_probs=99.5
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.+ .+|||+|||+|..+..+++..+ +.+++++|+ +.+++.|++++...+ ...+++++.++..+ ..+
T Consensus 166 ~~~-~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~---~~~-- 231 (334)
T 2ip2_A 166 FRG-RSFVDVGGGSGELTKAILQAEP----SARGVMLDR-EGSLGVARDNLSSLL---AGERVSLVGGDMLQ---EVP-- 231 (334)
T ss_dssp CTT-CEEEEETCTTCHHHHHHHHHCT----TCEEEEEEC-TTCTHHHHHHTHHHH---HTTSEEEEESCTTT---CCC--
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHCC----CCEEEEeCc-HHHHHHHHHHHhhcC---CCCcEEEecCCCCC---CCC--
Confidence 345 8999999999999999999853 589999999 999999999987765 34689999876543 222
Q ss_pred CcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHH----------------HH
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVYVGHPGGREELE----------------AV 233 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~----------------~~ 233 (267)
..||+|++. .++|+ .+...++++++.+.|||||++++.+............ ..
T Consensus 232 ~~~D~v~~~---------~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 302 (334)
T 2ip2_A 232 SNGDIYLLS---------RIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTT 302 (334)
T ss_dssp SSCSEEEEE---------SCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBH
T ss_pred CCCCEEEEc---------hhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCH
Confidence 368999887 34442 2344699999999999999999987643221111000 12
Q ss_pred HHHHHhCCCCceEEEEEeee
Q 041272 234 EAFARSLSVDDWICCKFQML 253 (267)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~~ 253 (267)
.+|.+.+...+|+..+....
T Consensus 303 ~e~~~ll~~aGf~~~~~~~~ 322 (334)
T 2ip2_A 303 EEVVDLLGRGGFAVERIVDL 322 (334)
T ss_dssp HHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHCCCceeEEEEC
Confidence 34444555678888776654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-13 Score=117.11 Aligned_cols=112 Identities=13% Similarity=0.006 Sum_probs=85.2
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
.+|||||||+|.++..+++..+ +.+|++||+++.+++.|++++.... ..+++++.+|..++.... .+..||
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p----~~~v~~VEidp~vi~~Ar~~~~~~~----~~rv~v~~~Da~~~l~~~-~~~~fD 161 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYP----QSRNTVVELDAELARLSREWFDIPR----APRVKIRVDDARMVAESF-TPASRD 161 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHST----TCEEEEEESCHHHHHHHHHHSCCCC----TTTEEEEESCHHHHHHTC-CTTCEE
T ss_pred CEEEEEECCcCHHHHHHHHHCC----CcEEEEEECCHHHHHHHHHhccccC----CCceEEEECcHHHHHhhc-cCCCCC
Confidence 3999999999999999999753 5799999999999999999986533 468999998877654332 234799
Q ss_pred EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 176 LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+|+++........ ..-...++++++.++|||||++++....
T Consensus 162 vIi~D~~~~~~~~-----~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 162 VIIRDVFAGAITP-----QNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp EEEECCSTTSCCC-----GGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEECCCCccccc-----hhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999852211100 0011268999999999999999887763
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-12 Score=114.87 Aligned_cols=139 Identities=13% Similarity=0.127 Sum_probs=96.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.+++.++.... .++|+|+|+|+.|++.|++|++.++ ...+++++++|..++.. ++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~----~~~v~g~Dis~~~l~~A~~n~~~~g---l~~~i~~~~~D~~~~~~---~~ 284 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRY----SGEIIGIEKYRKHLIGAEMNALAAG---VLDKIKFIQGDATQLSQ---YV 284 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTC----CSCEEEEESCHHHHHHHHHHHHHTT---CGGGCEEEECCGGGGGG---TC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCC----CCeEEEEeCCHHHHHHHHHHHHHcC---CCCceEEEECChhhCCc---cc
Confidence 67889999999999999999998742 2489999999999999999999887 34689999988766542 23
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (267)
..||+|++|++|-.... ........+.++++++.++| ||.++++.. ....+.+.+.. .+|.+.+..
T Consensus 285 ~~fD~Ii~npPyg~r~~-~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------~~~~~~~~~~~---~G~~~~~~~ 350 (373)
T 3tm4_A 285 DSVDFAISNLPYGLKIG-KKSMIPDLYMKFFNELAKVL--EKRGVFITT--------EKKAIEEAIAE---NGFEIIHHR 350 (373)
T ss_dssp SCEEEEEEECCCC-------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------CHHHHHHHHHH---TTEEEEEEE
T ss_pred CCcCEEEECCCCCcccC-cchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------CHHHHHHHHHH---cCCEEEEEE
Confidence 57999999987622110 00112233478889999988 566655554 12333444443 356665544
Q ss_pred eec
Q 041272 252 MLN 254 (267)
Q Consensus 252 ~~~ 254 (267)
.+.
T Consensus 351 ~~~ 353 (373)
T 3tm4_A 351 VIG 353 (373)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-12 Score=111.91 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=83.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccc-------cccceEEEecChhhh
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA-------EKGLVKLFNMCHSRM 164 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~-------~~~~v~~~~~~~~~l 164 (267)
...+.+|||||||+|..+..++++ + ..+|+++|+++.+++.|++++ ...... ...+++++.+|..+.
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~-~----~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~ 146 (281)
T 1mjf_A 73 HPKPKRVLVIGGGDGGTVREVLQH-D----VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF 146 (281)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS-C----CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhC-C----CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH
Confidence 356689999999999999999987 4 379999999999999999998 431000 136899998887654
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhh--HHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET--TKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
... +..||+|+++... |... ... ..++++++.++|||||++++...
T Consensus 147 l~~---~~~fD~Ii~d~~~-~~~~------~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 147 IKN---NRGFDVIIADSTD-PVGP------AKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp HHH---CCCEEEEEEECCC-CC-----------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcc---cCCeeEEEECCCC-CCCc------chhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 332 3479999999643 1110 111 26899999999999999988754
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=118.59 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=83.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..+++. + ..+|+|+|+| .+++.|+++++.++ ...+++++.++..++. .+.
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g----~~~v~~vD~s-~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~---~~~ 103 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-G----AKHVIGVDMS-SIIEMAKELVELNG---FSDKITLLRGKLEDVH---LPF 103 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-C----CSEEEEEESS-THHHHHHHHHHHTT---CTTTEEEEESCTTTSC---CSS
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-C----CCEEEEEChH-HHHHHHHHHHHHcC---CCCCEEEEECchhhcc---CCC
Confidence 457889999999999999999986 2 3699999999 59999999998877 4567999987765542 233
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
.+||+|+++... ...........++.++.++|||||+++.
T Consensus 104 ~~~D~Ivs~~~~------~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 104 PKVDIIISEWMG------YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp SCEEEEEECCCB------TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CcccEEEEeCch------hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 579999998421 0112233456889999999999999973
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-13 Score=110.74 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=79.0
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|..+..+++. + .+|+|+|+|+.+++.++++.. .++..+..+.. ...++.
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~-----~~~~~~D~~~~~~~~~~~~~~-----------~~~~~d~~~~~-~~~~~~ 92 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G-----TRVSGIEAFPEAAEQAKEKLD-----------HVVLGDIETMD-MPYEEE 92 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T-----CEEEEEESSHHHHHHHHTTSS-----------EEEESCTTTCC-CCSCTT
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHhCC-----------cEEEcchhhcC-CCCCCC
Confidence 57889999999999999999987 2 699999999999999987532 34554443321 112345
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.||+|+++ .+.++.++...+++++.++|||||++++....
T Consensus 93 ~fD~v~~~---------~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 93 QFDCVIFG---------DVLEHLFDPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp CEEEEEEE---------SCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred ccCEEEEC---------ChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 79999988 34555556679999999999999999998753
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=113.95 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=86.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-ccccceEEEecChhhhhhcCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-AEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.+.+|||||||+|..+..++++.+ ..+|+++|+++.+++.|++++...+.. ....+++++.+|..+.....
T Consensus 75 ~~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-- 148 (314)
T 1uir_A 75 HPEPKRVLIVGGGEGATLREVLKHPT----VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-- 148 (314)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTT----CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC--
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhcCC----CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc--
Confidence 34568999999999999999998743 479999999999999999988642100 01368999998877643322
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..||+|+++... +..... ....-...++++++.++|||||++++...
T Consensus 149 ~~~fD~Ii~d~~~-~~~~~~-~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 149 EERYDVVIIDLTD-PVGEDN-PARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp CCCEEEEEEECCC-CBSTTC-GGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCccEEEECCCC-cccccC-cchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 3479999999532 110000 00000136899999999999999998754
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-13 Score=120.42 Aligned_cols=106 Identities=17% Similarity=0.189 Sum_probs=81.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+|++|||||||+|.+++.+|+. | ..+|+|||.|+ +++.|+++++.++ +..+|+++.++.+++. . ..
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~a-G----A~~V~ave~s~-~~~~a~~~~~~n~---~~~~i~~i~~~~~~~~---l-pe 148 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQA-G----ARRVYAVEASA-IWQQAREVVRFNG---LEDRVHVLPGPVETVE---L-PE 148 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEEECST-THHHHHHHHHHTT---CTTTEEEEESCTTTCC---C-SS
T ss_pred cCCCEEEEeCCCccHHHHHHHHh-C----CCEEEEEeChH-HHHHHHHHHHHcC---CCceEEEEeeeeeeec---C-Cc
Confidence 46889999999999999888875 3 36899999996 8999999999988 5678999998776552 1 24
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
++|+|++.+.- ..+........++....++|||||+++-
T Consensus 149 ~~DvivsE~~~------~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 149 QVDAIVSEWMG------YGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CEEEEECCCCB------TTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cccEEEeeccc------ccccccchhhhHHHHHHhhCCCCceECC
Confidence 79999986310 1122223346778888899999999863
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=111.92 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=86.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
.+++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+......+++++.+|..+..... .
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~ 149 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKYKS----VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--T 149 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--C
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC--C
Confidence 34668999999999999999997642 47999999999999999999865421111368999988876643322 3
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhh--HHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSET--TKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|+++... |.. .... ..++++++.++|||||++++...
T Consensus 150 ~~fD~Ii~d~~~-~~~------~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 150 NTYDVIIVDSSD-PIG------PAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp SCEEEEEEECCC-TTT------GGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCceEEEEcCCC-CCC------cchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 479999998532 110 0111 16899999999999999988754
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-13 Score=113.81 Aligned_cols=97 Identities=22% Similarity=0.322 Sum_probs=77.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.+++.|+++. .++.++.++..++ ...+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~---~~~~~ 147 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP----EITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHRL---PFSDT 147 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT----TSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTSC---SBCTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC----CCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcchhhC---CCCCC
Confidence 5788999999999999999999853 479999999999999998853 3567777665443 22345
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+||+|++... ...++++.++|||||+++++.+.
T Consensus 148 ~fD~v~~~~~----------------~~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 148 SMDAIIRIYA----------------PCKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp CEEEEEEESC----------------CCCHHHHHHHEEEEEEEEEEEEC
T ss_pred ceeEEEEeCC----------------hhhHHHHHHhcCCCcEEEEEEcC
Confidence 8999998732 13589999999999999998764
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=113.81 Aligned_cols=116 Identities=15% Similarity=0.128 Sum_probs=85.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||||||+|.++..++++.+ ..+|+++|+|+.+++.|++++..........+++++.+|..+..... +.
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~ 188 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKS----VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--TN 188 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--CS
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc--CC
Confidence 4568999999999999999998643 47999999999999999999876210001368999988876543322 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhh-HHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSET-TKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|+++... |.. ..... ..++++++.++|||||++++...
T Consensus 189 ~fDvIi~d~~~-p~~-----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 189 TYDVIIVDSSD-PIG-----PAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp CEEEEEEECCC-SSS-----GGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CceEEEECCcC-CCC-----cchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 79999999531 110 00111 16899999999999999988654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.45 E-value=8.5e-13 Score=113.04 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=85.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..+.+|||||||+|..+..++++.+ ..+|++||+++.+++.|++++...+......+++++.+|..+..... +.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~ 147 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPS----VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS--EN 147 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTT----CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC--CS
T ss_pred CCCCEEEEECCchHHHHHHHHhCCC----CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CC
Confidence 3567999999999999999998743 47999999999999999999854210001368999988876543322 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|++++.. |..... .-...++++++.++|||||++++...
T Consensus 148 ~fD~Ii~d~~~-~~~~~~----~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 148 QYDVIMVDSTE-PVGPAV----NLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp CEEEEEESCSS-CCSCCC----CCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CeeEEEECCCC-CCCcch----hhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 79999999643 211000 00125799999999999999988654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-13 Score=118.16 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=82.7
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||||||+|.++..+++. + ..+|+|+|+|+ +++.|+++++.++ ...+++++.++..++. .+
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~-g----~~~V~~vD~s~-~~~~a~~~~~~~~---l~~~v~~~~~d~~~~~---~~- 114 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQA-G----ARKIYAVEAST-MAQHAEVLVKSNN---LTDRIVVIPGKVEEVS---LP- 114 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEEECST-HHHHHHHHHHHTT---CTTTEEEEESCTTTCC---CS-
T ss_pred cCCcCEEEEcCCCccHHHHHHHhC-C----CCEEEEECCHH-HHHHHHHHHHHcC---CCCcEEEEEcchhhCC---CC-
Confidence 457889999999999999999986 2 36999999996 8899999998877 3478999987765542 12
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+||+|+++.... +...+.....+.++.++|||||++++..
T Consensus 115 ~~~D~Ivs~~~~~-------~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 115 EQVDIIISEPMGY-------MLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp SCEEEEEECCCBT-------TBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred CceeEEEEeCchh-------cCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 4799999984210 0012334678888999999999998543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-12 Score=112.37 Aligned_cols=115 Identities=11% Similarity=0.037 Sum_probs=83.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc--cccccccceEEEecChhhhhhcCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT--TSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..+.+|||||||+|..+..++++.+ ..+|+++|+++.+++.|++++... + ....+++++.+|..+.... .
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~ar~~~~~~~~~--~~~~rv~v~~~Da~~~l~~--~ 165 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS----VESVVQCEIDEDVIQVSKKFLPGMAIG--YSSSKLTLHVGDGFEFMKQ--N 165 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHHHHHHT--C
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHhHHhhcc--cCCCcEEEEECcHHHHHhh--C
Confidence 4668999999999999999998743 479999999999999999998652 2 0146899998887654332 2
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..||+|+++....... .......++++++.++|||||++++...
T Consensus 166 ~~~fD~Ii~d~~~~~~~-----~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 166 QDAFDVIITDSSDPMGP-----AESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp SSCEEEEEEECC----------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCceEEEECCCCCCCc-----chhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 35799999985321000 0001235789999999999999988764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=124.93 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=85.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc--cccccceEEEecChhhhhhcCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS--KAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~--~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++.+|||+|||+|.++..+++..++ ..+|+|||+|+.|++.|++++..... .....++++++++..++ ..
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p---~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL---p~ 792 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTS---LQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF---DS 792 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCC---CCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC---CT
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCC---CCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC---Cc
Confidence 347889999999999999999987532 36999999999999999997754210 00145899998776553 33
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechh--hHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSE--TTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+..||+|++. .++++.+ ....+++++.++|||| ++++.+.
T Consensus 793 ~d~sFDlVV~~---------eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 793 RLHDVDIGTCL---------EVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp TSCSCCEEEEE---------SCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred ccCCeeEEEEe---------CchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 45689999997 3454443 3457999999999999 7777664
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-12 Score=114.76 Aligned_cols=103 Identities=14% Similarity=0.068 Sum_probs=85.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc---------------cccccccceEEEe
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT---------------TSKAEKGLVKLFN 158 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~---------------~~~~~~~~v~~~~ 158 (267)
++.+|||+|||+|..++.+|++.+ +.+|+++|+++++++.+++|++.+ + ..++++++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~----~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~g----l~~i~v~~ 118 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP----AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG----EKTIVINH 118 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS----CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEES----SSEEEEEE
T ss_pred CCCEEEECCCchhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccC----CCceEEEc
Confidence 688999999999999999999864 368999999999999999999988 5 34589999
Q ss_pred cChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 159 ~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+|..++.... ...||+|+.|++.. ...+++.+.+.|||||++++++
T Consensus 119 ~Da~~~~~~~--~~~fD~I~lDP~~~-------------~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 119 DDANRLMAER--HRYFHFIDLDPFGS-------------PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp SCHHHHHHHS--TTCEEEEEECCSSC-------------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcHHHHHHhc--cCCCCEEEeCCCCC-------------HHHHHHHHHHhcCCCCEEEEEe
Confidence 8887765433 23699999885221 1478999999999999998876
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=115.46 Aligned_cols=128 Identities=15% Similarity=0.072 Sum_probs=89.4
Q ss_pred CCCEEEEecCCCChHHHHHHHh---cCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh--hcC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKM---VADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME--EIV 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~---~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~--~~~ 168 (267)
++.+|||||||+|..+..+++. +++ +++|+|||+|+++++.|+. ...++++++++..+.. ...
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~---~~~V~gvD~s~~~l~~a~~---------~~~~v~~~~gD~~~~~~l~~~ 148 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGI---DCQVIGIDRDLSRCQIPAS---------DMENITLHQGDCSDLTTFEHL 148 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTC---CCEEEEEESCCTTCCCCGG---------GCTTEEEEECCSSCSGGGGGG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCC---CCEEEEEeCChHHHHHHhc---------cCCceEEEECcchhHHHHHhh
Confidence 5679999999999999999987 332 5899999999999988872 1367999988876541 111
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHh-cccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAER-ILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWIC 247 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~-~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (267)
.+.+||+|+++... .....+++++.+ +|||||++++.+..... .......+.++++..+ ..|.+
T Consensus 149 -~~~~fD~I~~d~~~------------~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~-~~~~~~~~~~~l~~~~-~~f~~ 213 (236)
T 2bm8_A 149 -REMAHPLIFIDNAH------------ANTFNIMKWAVDHLLEEGDYFIIEDMIPYW-YRYAPQLFSEYLGAFR-DVLSM 213 (236)
T ss_dssp -SSSCSSEEEEESSC------------SSHHHHHHHHHHHTCCTTCEEEECSCHHHH-HHHCHHHHHHHHHTTT-TTEEE
T ss_pred -ccCCCCEEEECCch------------HhHHHHHHHHHHhhCCCCCEEEEEeCcccc-cccCHHHHHHHHHhCc-ccEEE
Confidence 22368999988431 134679999997 99999999886531000 0011236677777665 35665
Q ss_pred E
Q 041272 248 C 248 (267)
Q Consensus 248 ~ 248 (267)
.
T Consensus 214 ~ 214 (236)
T 2bm8_A 214 D 214 (236)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=107.53 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=74.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.++..+++ . +|+|+|+.+++.|+++ +++++.++..++ ..++..
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~--------~--~~vD~s~~~~~~a~~~-----------~~~~~~~d~~~~---~~~~~~ 102 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKI--------K--IGVEPSERMAEIARKR-----------GVFVLKGTAENL---PLKDES 102 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTC--------C--EEEESCHHHHHHHHHT-----------TCEEEECBTTBC---CSCTTC
T ss_pred CCCcEEEeCCCCCHHHHHHHH--------H--hccCCCHHHHHHHHhc-----------CCEEEEcccccC---CCCCCC
Confidence 488999999999999987652 2 9999999999999885 356666555433 233457
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
||+|+++ .++++.++...+++++.++|||||++++....
T Consensus 103 fD~v~~~---------~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 103 FDFALMV---------TTICFVDDPERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp EEEEEEE---------SCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eeEEEEc---------chHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence 9999988 34444566789999999999999999998764
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=113.47 Aligned_cols=116 Identities=14% Similarity=0.057 Sum_probs=82.5
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
...+.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++..........+++++.+|..+.... .+
T Consensus 106 ~~~~~~VLdIG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~ 179 (314)
T 2b2c_A 106 HPDPKRVLIIGGGDGGILREVLKHES----VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN--HK 179 (314)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTT----CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH--CT
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh--cC
Confidence 34567999999999999999998743 4799999999999999999986531000136899998887654332 23
Q ss_pred CcEEEEEEeCCCCCCCCCceeechh-hHHHHHHHHHhcccCCcEEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSE-TTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..||+|+++... |.. .... ...++++++.++|||||++++..
T Consensus 180 ~~fD~Ii~d~~~-~~~-----~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 180 NEFDVIITDSSD-PVG-----PAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp TCEEEEEECCC-------------------HHHHHHHHEEEEEEEEEEC
T ss_pred CCceEEEEcCCC-CCC-----cchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 479999998532 110 0001 11689999999999999998865
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-12 Score=116.08 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=93.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||||||+|..+..+++..+ +.+++++|+ +.++. +++++..+ ...+++++.+|.. +..+
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~--~~~~~~~~---~~~~v~~~~~d~~---~~~p-- 246 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHP----GLQGVLLDR-AEVVA--RHRLDAPD---VAGRWKVVEGDFL---REVP-- 246 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCT----TEEEEEEEC-HHHHT--TCCCCCGG---GTTSEEEEECCTT---TCCC--
T ss_pred ccCCceEEEECCccCHHHHHHHHHCC----CCEEEEecC-HHHhh--cccccccC---CCCCeEEEecCCC---CCCC--
Confidence 45778999999999999999999854 589999999 45554 44443333 3467999987653 2222
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhH--HHHHHHHHhcccCCcEEEEEEecCCCCChhhH----------------HHH
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETT--KMALEAAERILIPGGLISMVVYVGHPGGREEL----------------EAV 233 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~----------------~~~ 233 (267)
.||+|++. .++|+.++. .+++++++++|||||++++.+........... ...
T Consensus 247 -~~D~v~~~---------~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~ 316 (348)
T 3lst_A 247 -HADVHVLK---------RILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTA 316 (348)
T ss_dssp -CCSEEEEE---------SCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBH
T ss_pred -CCcEEEEe---------hhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCH
Confidence 68999887 345544433 79999999999999999998764332211100 012
Q ss_pred HHHHHhCCCCceEEEEEee
Q 041272 234 EAFARSLSVDDWICCKFQM 252 (267)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~ 252 (267)
.+|.+.+...+|++++...
T Consensus 317 ~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 317 AELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp HHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHCCCceEEEEE
Confidence 3455556667898887765
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-13 Score=108.90 Aligned_cols=110 Identities=21% Similarity=0.170 Sum_probs=76.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-----
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE----- 166 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~----- 166 (267)
++++.+|||+|||+|.++..++++ +++|+|+|+++.. . ..+++++++|..+...
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~------~~~V~gvD~~~~~-----------~----~~~v~~~~~D~~~~~~~~~~~ 81 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL------ARKIISIDLQEME-----------E----IAGVRFIRCDIFKETIFDDID 81 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT------CSEEEEEESSCCC-----------C----CTTCEEEECCTTSSSHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc------CCcEEEEeccccc-----------c----CCCeEEEEccccCHHHHHHHH
Confidence 578999999999999999999987 3799999999841 1 3578888877654321
Q ss_pred -cCC--CCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 167 -IVP--KSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 167 -~~~--~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
... ....||+|++|+..-........+ .......+++.+.++|||||.|++..+.+
T Consensus 82 ~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~ 142 (191)
T 3dou_A 82 RALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG 142 (191)
T ss_dssp HHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred HHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence 111 002799999996321111111111 12334678999999999999999988843
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.6e-13 Score=111.83 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=79.7
Q ss_pred CEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 96 DTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 96 ~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.+|||||||+ +..+..+++... |+.+|++||.|+.|++.|++++.... ..++++++.|..++...
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~---P~arVv~VD~sp~mLa~Ar~~l~~~~----~~~~~~v~aD~~~~~~~l~~~~~ 152 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVA---PESRVVYVDNDPIVLTLSQGLLASTP----EGRTAYVEADMLDPASILDAPEL 152 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHC---TTCEEEEEECCHHHHHTTHHHHCCCS----SSEEEEEECCTTCHHHHHTCHHH
T ss_pred CEEEEeCCCCCcccHHHHHHHHHC---CCCEEEEEeCChHHHHHHHHHhccCC----CCcEEEEEecccChhhhhccccc
Confidence 5899999997 445566665542 36899999999999999999887643 35799999888776321
Q ss_pred ---CCCCCcEEEEEEeCCCCCCCCCceeechhh---HHHHHHHHHhcccCCcEEEEEEecC
Q 041272 168 ---VPKSTAVRLVAFNLGYLPGGDKSVITTSET---TKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 168 ---~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+..+.++ .++++ .++|+.++ +..+++++.+.|+|||+|+++....
T Consensus 153 ~~~~D~~~p~-av~~~---------avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 153 RDTLDLTRPV-ALTVI---------AIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp HTTCCTTSCC-EEEEE---------SCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred ccccCcCCcc-hHHhh---------hhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 1112233 35555 24443333 5789999999999999999988754
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-12 Score=103.32 Aligned_cols=102 Identities=20% Similarity=0.146 Sum_probs=79.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|+++++.++ . ++++++++..++.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~-~----~~~v~~vD~~~~~~~~a~~~~~~~~----~-~~~~~~~d~~~~~------ 110 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLL-G----AKEVICVEVDKEAVDVLIENLGEFK----G-KFKVFIGDVSEFN------ 110 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHTGGGT----T-SEEEEESCGGGCC------
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHc-C----CCEEEEEECCHHHHHHHHHHHHHcC----C-CEEEEECchHHcC------
Confidence 457889999999999999999987 2 2589999999999999999998876 2 7899987775542
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..||+|++|+++..... .....+++++.+++ || +++.+
T Consensus 111 ~~~D~v~~~~p~~~~~~-------~~~~~~l~~~~~~l--~~-~~~~~ 148 (207)
T 1wy7_A 111 SRVDIVIMNPPFGSQRK-------HADRPFLLKAFEIS--DV-VYSIH 148 (207)
T ss_dssp CCCSEEEECCCCSSSST-------TTTHHHHHHHHHHC--SE-EEEEE
T ss_pred CCCCEEEEcCCCccccC-------CchHHHHHHHHHhc--Cc-EEEEE
Confidence 27999999987643321 12247888898888 44 55555
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-12 Score=113.63 Aligned_cols=107 Identities=6% Similarity=-0.024 Sum_probs=83.0
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh-hhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR-MEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~~~ 171 (267)
.++.+|||+| |+|.++..+++... ..+|+|+|+++.|++.|+++++.++ ..+++++.+|..+ +... .+
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~----~~~v~~vDi~~~~l~~a~~~~~~~g----~~~v~~~~~D~~~~l~~~--~~ 239 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGL----PKRIAVLDIDERLTKFIEKAANEIG----YEDIEIFTFDLRKPLPDY--AL 239 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTC----CSEEEEECSCHHHHHHHHHHHHHHT----CCCEEEECCCTTSCCCTT--TS
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcC----CCCEEEEEChhhhhchhh--cc
Confidence 3678999999 99999999998632 3799999999999999999999877 3489999877654 2211 13
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE-EEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI-SMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l-~i~~~ 220 (267)
..||+|++|+++.+. ....+++++.++|||||++ ++.+.
T Consensus 240 ~~fD~Vi~~~p~~~~----------~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 240 HKFDTFITDPPETLE----------AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp SCBSEEEECCCSSHH----------HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCccEEEECCCCchH----------HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 479999999654221 2378999999999999954 44444
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-12 Score=113.97 Aligned_cols=136 Identities=16% Similarity=0.212 Sum_probs=91.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCC-CCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADE-SSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~-~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
.++.+|||+|||+|.++..+++.++.. ....+|+|+|+++.+++.|+.++...+ . ++.+++++... .. ..
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g----~-~~~i~~~D~l~---~~-~~ 199 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR----Q-KMTLLHQDGLA---NL-LV 199 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT----C-CCEEEESCTTS---CC-CC
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC----C-CceEEECCCCC---cc-cc
Confidence 356799999999999999999886420 001689999999999999999998776 2 67787766532 11 23
Q ss_pred CcEEEEEEeCCC--CCCCCCc--e----e-echhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHH
Q 041272 172 TAVRLVAFNLGY--LPGGDKS--V----I-TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFAR 238 (267)
Q Consensus 172 ~~~d~ii~~~~~--lp~~d~~--~----~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 238 (267)
..||+|++|+++ ++..+.. . . -.......+++.+.+.|||||+++++...+...+. ....+.+++.
T Consensus 200 ~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~-~~~~ir~~l~ 274 (344)
T 2f8l_A 200 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTS-DFAKVDKFIK 274 (344)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGST-THHHHHHHHH
T ss_pred CCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCc-hHHHHHHHHH
Confidence 479999999874 2211000 0 0 00012236899999999999999998865422221 2344555544
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=102.87 Aligned_cols=111 Identities=20% Similarity=0.197 Sum_probs=77.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-----
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE----- 166 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~----- 166 (267)
++++.+|||+|||+|.++..+++.++. +.+|+|+|+++ +++. .+++++..+..+...
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~---~~~v~~~D~~~-~~~~--------------~~~~~~~~d~~~~~~~~~~~ 81 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGG---KGRIIACDLLP-MDPI--------------VGVDFLQGDFRDELVMKALL 81 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCT---TCEEEEEESSC-CCCC--------------TTEEEEESCTTSHHHHHHHH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCC---CCeEEEEECcc-cccc--------------CcEEEEEcccccchhhhhhh
Confidence 568889999999999999999998643 47999999999 7532 457777766655421
Q ss_pred -cCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 167 -IVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 167 -~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.. ++..||+|+++.+..........+ .......+++++.++|||||.+++..+.
T Consensus 82 ~~~-~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 82 ERV-GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHH-TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ccC-CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 02 234799999985431111100000 0011268999999999999999988774
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.1e-13 Score=118.31 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=83.4
Q ss_pred HHhhHHHhhhcCCCCEEEEecCC------CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceE
Q 041272 82 IAANGVWKHVVRKGDTVVDATCG------NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVK 155 (267)
Q Consensus 82 ~~~~~l~~~~l~~~~~VLDlGcG------~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~ 155 (267)
.....++.....++.+||||||| +|..++.+++.+. |+++|+|||+|+.|. . . ..+++
T Consensus 204 ~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~f---P~a~V~GVDiSp~m~--------~-~----~~rI~ 267 (419)
T 3sso_A 204 PHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFF---PRGQIYGLDIMDKSH--------V-D----ELRIR 267 (419)
T ss_dssp HHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHC---TTCEEEEEESSCCGG--------G-C----BTTEE
T ss_pred HHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhC---CCCEEEEEECCHHHh--------h-c----CCCcE
Confidence 34444444444567899999999 7777888877642 368999999999982 1 1 36899
Q ss_pred EEecChhhhhhc---CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 156 LFNMCHSRMEEI---VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 156 ~~~~~~~~l~~~---~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
++++|..++... ...+.+||+|+++. .+...+...+|++++++|||||++++.+..
T Consensus 268 fv~GDa~dlpf~~~l~~~d~sFDlVisdg----------sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 268 TIQGDQNDAEFLDRIARRYGPFDIVIDDG----------SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp EEECCTTCHHHHHHHHHHHCCEEEEEECS----------CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred EEEecccccchhhhhhcccCCccEEEECC----------cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999888765322 11124799999872 234567789999999999999999998654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=104.43 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=74.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh------
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME------ 165 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~------ 165 (267)
++++.+|||+|||+|.++..++++++. ++++|+|+|+|+.+ . ..++++++++..+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~--~~~~v~gvD~s~~~-----------~----~~~v~~~~~d~~~~~~~~~~~ 82 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKN--YKNKIIGIDKKIMD-----------P----IPNVYFIQGEIGKDNMNNIKN 82 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTT--SCEEEEEEESSCCC-----------C----CTTCEEEECCTTTTSSCCC--
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCC--CCceEEEEeCCccC-----------C----CCCceEEEccccchhhhhhcc
Confidence 578899999999999999999998641 03799999999931 1 246777776665432
Q ss_pred -----------------hcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 166 -----------------EIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 166 -----------------~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.. .++..||+|+++............+ ......++++++.++|||||.+++..+.
T Consensus 83 ~~~i~~~~~~~~~~~~~~~-~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 83 INYIDNMNNNSVDYKLKEI-LQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp ---------CHHHHHHHHH-HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccchhhHHHHHhh-cCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 00 1234799999985321000000000 0111235899999999999999987764
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=119.41 Aligned_cols=106 Identities=14% Similarity=0.162 Sum_probs=82.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||||||+|.++..+++. + ..+|+|+|+|+ +++.|+++++.++ +..+++++.++..++. . .
T Consensus 156 ~~~~~~VLDiGcGtG~la~~la~~-~----~~~V~gvD~s~-~l~~A~~~~~~~g---l~~~v~~~~~d~~~~~---~-~ 222 (480)
T 3b3j_A 156 DFKDKIVLDVGCGSGILSFFAAQA-G----ARKIYAVEAST-MAQHAEVLVKSNN---LTDRIVVIPGKVEEVS---L-P 222 (480)
T ss_dssp GTTTCEEEEESCSTTHHHHHHHHT-T----CSEEEEEECHH-HHHHHHHHHHHTT---CTTTEEEEESCTTTCC---C-S
T ss_pred hcCCCEEEEecCcccHHHHHHHHc-C----CCEEEEEEcHH-HHHHHHHHHHHcC---CCCcEEEEECchhhCc---c-C
Confidence 346789999999999999999885 2 46999999999 9999999999877 4478999987765532 1 2
Q ss_pred CcEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.+||+|+++.. ..+ ..+.....+.++.++|||||++++.
T Consensus 223 ~~fD~Ivs~~~--------~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 223 EQVDIIISEPM--------GYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp SCEEEEECCCC--------HHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred CCeEEEEEeCc--------hHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 37999999842 011 1244566778899999999999853
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.9e-13 Score=123.58 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=87.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+..+.+|||||||+|.++..||+. +++|+|||.++.+|+.|+.++.+.+ ..++++.+++.+++..... +
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~------ga~V~giD~~~~~i~~a~~~a~~~~----~~~~~~~~~~~~~~~~~~~-~ 132 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK------GATIVGIDFQQENINVCRALAEENP----DFAAEFRVGRIEEVIAALE-E 132 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHTST----TSEEEEEECCHHHHHHHCC-T
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC------CCEEEEECCCHHHHHHHHHHHHhcC----CCceEEEECCHHHHhhhcc-C
Confidence 456679999999999999999997 5899999999999999999998866 4579999998888865432 3
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHH--HHHHHHHhcccCCcEEEEEEecC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTK--MALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..||+|++. .+++|.++.. ..+..+.+.|+++|..++....+
T Consensus 133 ~~fD~v~~~---------e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 133 GEFDLAIGL---------SVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp TSCSEEEEE---------SCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred CCccEEEEC---------cchhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 479999887 5666655543 33455777789988887776644
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-12 Score=111.13 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=98.6
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.+..+|||||||+|..+..++++. |+.+++..|. |++++.|++++...+ ..+++++.+|.. +...+
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~----p~~~~~~~dl-p~v~~~a~~~~~~~~----~~rv~~~~gD~~---~~~~~- 243 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLY----PGCKITVFDI-PEVVWTAKQHFSFQE----EEQIDFQEGDFF---KDPLP- 243 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHC----SSCEEEEEEC-HHHHHHHHHHSCC------CCSEEEEESCTT---TSCCC-
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhC----CCceeEeccC-HHHHHHHHHhhhhcc----cCceeeecCccc---cCCCC-
Confidence 3566799999999999999999995 5689999997 889999999886644 578999987653 22222
Q ss_pred CcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEecCCCCC--hhhHH---------------H
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYVGHPGG--REELE---------------A 232 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~---------------~ 232 (267)
.+|++++. .++|.. +...++|+++++.|+|||+++|.+..-.+.. ..... .
T Consensus 244 -~~D~~~~~---------~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert 313 (353)
T 4a6d_A 244 -EADLYILA---------RVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERT 313 (353)
T ss_dssp -CCSEEEEE---------SSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCC
T ss_pred -CceEEEee---------eecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCC
Confidence 35777776 355533 3346899999999999999999886432211 11110 1
Q ss_pred HHHHHHhCCCCceEEEEEeee
Q 041272 233 VEAFARSLSVDDWICCKFQML 253 (267)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~ 253 (267)
..+|.+.+...+|+.+++...
T Consensus 314 ~~e~~~ll~~AGf~~v~v~~~ 334 (353)
T 4a6d_A 314 PTHYHMLLSSAGFRDFQFKKT 334 (353)
T ss_dssp HHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHCCCceEEEEEc
Confidence 245556666678988876654
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=115.43 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=86.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccc-eEEEecChhhhhh-cCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL-VKLFNMCHSRMEE-IVPK 170 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~-v~~~~~~~~~l~~-~~~~ 170 (267)
+++.+|||++||+|.+++.+|.+.+. ..+|+++|+++.+++.+++|++.++ ...+ ++++.+|..++.. ..
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~g---a~~V~avDi~~~av~~~~~N~~~Ng---l~~~~v~v~~~Da~~~l~~~~-- 122 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSC---VEKAYANDISSKAIEIMKENFKLNN---IPEDRYEIHGMEANFFLRKEW-- 122 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSC---EEEEEEECSCHHHHHHHHHHHHHTT---CCGGGEEEECSCHHHHHHSCC--
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHhC---CCCceEEEEeCCHHHHHHHhh--
Confidence 46889999999999999999987531 2689999999999999999999988 3344 9999988877654 33
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...||+|+.|+ + . ....+++.+.+.|+|||++++++.
T Consensus 123 ~~~fD~V~lDP-~--g----------~~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 123 GFGFDYVDLDP-F--G----------TPVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp SSCEEEEEECC-S--S----------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCcEEEECC-C--c----------CHHHHHHHHHHHhCCCCEEEEEec
Confidence 23699999995 1 1 113689999999999999988773
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.36 E-value=9.6e-12 Score=100.95 Aligned_cols=99 Identities=17% Similarity=0.108 Sum_probs=73.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|++++. ++++++++..++.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~----~~~v~~vD~~~~~~~~a~~~~~---------~~~~~~~d~~~~~------ 108 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-G----AESVTAFDIDPDAIETAKRNCG---------GVNFMVADVSEIS------ 108 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-T----BSEEEEEESCHHHHHHHHHHCT---------TSEEEECCGGGCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-C----CCEEEEEECCHHHHHHHHHhcC---------CCEEEECcHHHCC------
Confidence 457789999999999999999987 2 3589999999999999998754 5778887765532
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|++|+++....+ ....++++++.+.+ |.+++++.
T Consensus 109 ~~~D~v~~~~p~~~~~~-------~~~~~~l~~~~~~~---g~~~~~~~ 147 (200)
T 1ne2_A 109 GKYDTWIMNPPFGSVVK-------HSDRAFIDKAFETS---MWIYSIGN 147 (200)
T ss_dssp CCEEEEEECCCC--------------CHHHHHHHHHHE---EEEEEEEE
T ss_pred CCeeEEEECCCchhccC-------chhHHHHHHHHHhc---CcEEEEEc
Confidence 37999999976532211 11247889999988 44555554
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-12 Score=111.36 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=92.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||||||+|..+..+++.+ |+.+++++|+ +.+++.|++ ..+++++.+|..+ ..+ .
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~p-~ 261 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKY----PSINAINFDL-PHVIQDAPA----------FSGVEHLGGDMFD---GVP-K 261 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC----TTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTT---CCC-C
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhC----CCCEEEEEeh-HHHHHhhhh----------cCCCEEEecCCCC---CCC-C
Confidence 4567899999999999999999986 4589999999 888877654 2578898876543 222 2
Q ss_pred CcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEecCCCCC---hhh-H------H--------
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVYVGHPGG---REE-L------E-------- 231 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~-~------~-------- 231 (267)
. |++++. .++|+ .+...+++++++++|||||++++.+....... ... . .
T Consensus 262 ~--D~v~~~---------~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g 330 (368)
T 3reo_A 262 G--DAIFIK---------WICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGG 330 (368)
T ss_dssp C--SEEEEE---------SCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBC
T ss_pred C--CEEEEe---------chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCC
Confidence 2 888777 34442 23456899999999999999999876432211 000 0 0
Q ss_pred ---HHHHHHHhCCCCceEEEEEeeec
Q 041272 232 ---AVEAFARSLSVDDWICCKFQMLN 254 (267)
Q Consensus 232 ---~~~~~~~~l~~~~~~~~~~~~~~ 254 (267)
...+|.+.+...+|+.++.....
T Consensus 331 ~~rt~~e~~~ll~~AGF~~v~~~~~~ 356 (368)
T 3reo_A 331 KERTEKEFQALAMASGFRGFKVASCA 356 (368)
T ss_dssp CCCCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccCCHHHHHHHHHHCCCeeeEEEEeC
Confidence 02345555666788888776654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.4e-13 Score=113.15 Aligned_cols=112 Identities=15% Similarity=0.064 Sum_probs=74.1
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE--ecChhhhhhc
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF--NMCHSRMEEI 167 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~ 167 (267)
..++++.+|||+|||+|.++..+++. ++|+|||+++ |+..++++..... ....++.++ ++|..++.
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~-------~~V~gvD~s~-m~~~a~~~~~~~~--~~~~~v~~~~~~~D~~~l~-- 137 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR-------PHVMDVRAYT-LGVGGHEVPRITE--SYGWNIVKFKSRVDIHTLP-- 137 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS-------TTEEEEEEEC-CCCSSCCCCCCCC--BTTGGGEEEECSCCTTTSC--
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc-------CcEEEEECch-hhhhhhhhhhhhh--ccCCCeEEEecccCHhHCC--
Confidence 45678999999999999999999986 4799999999 5433322211000 011267888 76655432
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhh--HHHHHHHHHhcccCCc--EEEEEEec
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSET--TKMALEAAERILIPGG--LISMVVYV 221 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~--~~~~l~~~~~~LkpgG--~l~i~~~~ 221 (267)
+..||+|++++..+. . ....+. ...+++.+.++||||| .+++.++.
T Consensus 138 ---~~~fD~V~sd~~~~~-~----~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 138 ---VERTDVIMCDVGESS-P----KWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp ---CCCCSEEEECCCCCC-S----CHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred ---CCCCcEEEEeCcccC-C----ccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 347999999854211 0 000111 1238899999999999 99887763
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-12 Score=108.38 Aligned_cols=112 Identities=15% Similarity=0.110 Sum_probs=77.3
Q ss_pred CCCEEEEecCCCCh----HHHHHHHhcCCCCC-CcEEEEEeCChHHHHHHHHHHhhc-----------------------
Q 041272 94 KGDTVVDATCGNGY----DTLMMLKMVADESS-AGCVYGLDIQSEALKSTSSLLDKT----------------------- 145 (267)
Q Consensus 94 ~~~~VLDlGcG~G~----~~~~la~~~~~~~p-~~~v~giD~s~~~i~~a~~~~~~~----------------------- 145 (267)
++.+|||+|||||. ++..+++..+. .+ +.+|+|+|+|+.|++.|++++...
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~-~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~ 183 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGM-APGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 183 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCS-CTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhccc-CCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCC
Confidence 45699999999998 66777776542 01 369999999999999999975210
Q ss_pred cc----cccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEE
Q 041272 146 TS----KAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 146 ~~----~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
+. +....+|.|.+.+..+. ..+....||+|++.. +++ ..+...++++++++.|||||+|++
T Consensus 184 ~~~~v~~~lr~~V~F~~~dl~~~--~~~~~~~fDlI~crn---------vliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 184 GLVRVRQELANYVEFSSVNLLEK--QYNVPGPFDAIFCRN---------VMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp SEEEECHHHHTTEEEEECCTTCS--SCCCCCCEEEEEECS---------SGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CceeechhhcccCeEEecccCCC--CCCcCCCeeEEEECC---------chHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 00 00113678877554331 112134799999862 322 345568999999999999999976
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.1e-12 Score=101.50 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=74.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCC-----CCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE-ecChhhhh
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADE-----SSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF-NMCHSRME 165 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~-----~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~-~~~~~~l~ 165 (267)
++++.+|||+|||+|.++..+++.++.. .+..+|+|+|+|+.+ . ..+++++ .++..+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~----~~~~~~~~~~d~~~~~ 84 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P----LEGATFLCPADVTDPR 84 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C----CTTCEEECSCCTTSHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c----CCCCeEEEeccCCCHH
Confidence 6788999999999999999999986420 001799999999842 1 2456677 66544322
Q ss_pred hc-----CCCCCcEEEEEEeCCCCCCCCCceeechhh-------HHHHHHHHHhcccCCcEEEEEEec
Q 041272 166 EI-----VPKSTAVRLVAFNLGYLPGGDKSVITTSET-------TKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 166 ~~-----~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.. ..++..||+|+++.... ...++..+ ...+++++.++|||||++++.++.
T Consensus 85 ~~~~~~~~~~~~~fD~V~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 85 TSQRILEVLPGRRADVILSDMAPN-----ATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHHHHHHHSGGGCEEEEEECCCCC-----CCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHhcCCCCCcEEEeCCCCC-----CCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 10 11234799999985210 01111111 258899999999999999998773
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.9e-13 Score=113.99 Aligned_cols=112 Identities=18% Similarity=0.069 Sum_probs=74.5
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE--ecChhhhhhc
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF--NMCHSRMEEI 167 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~ 167 (267)
..++++.+|||+|||+|.++..++++ ++|+|||+++ |+..++++..... ....++.++ ++|..++.
T Consensus 78 ~~~~~g~~VLDlGcGtG~~s~~la~~-------~~V~gVD~s~-m~~~a~~~~~~~~--~~~~~v~~~~~~~D~~~l~-- 145 (276)
T 2wa2_A 78 GGVELKGTVVDLGCGRGSWSYYAASQ-------PNVREVKAYT-LGTSGHEKPRLVE--TFGWNLITFKSKVDVTKME-- 145 (276)
T ss_dssp TSCCCCEEEEEESCTTCHHHHHHHTS-------TTEEEEEEEC-CCCTTSCCCCCCC--CTTGGGEEEECSCCGGGCC--
T ss_pred CCCCCCCEEEEeccCCCHHHHHHHHc-------CCEEEEECch-hhhhhhhchhhhh--hcCCCeEEEeccCcHhhCC--
Confidence 34678899999999999999999987 4699999999 6444433211100 011278888 76665432
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhH--HHHHHHHHhcccCCc--EEEEEEec
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETT--KMALEAAERILIPGG--LISMVVYV 221 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~--~~~l~~~~~~LkpgG--~l~i~~~~ 221 (267)
+.+||+|++++..+. . ....+.. ..+++++.++||||| .+++.++.
T Consensus 146 ---~~~fD~Vvsd~~~~~-~----~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 ---PFQADTVLCDIGESN-P----TAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp ---CCCCSEEEECCCCCC-S----CHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred ---CCCcCEEEECCCcCC-C----chhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 347999999854210 0 0011111 247899999999999 99887763
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=110.72 Aligned_cols=126 Identities=22% Similarity=0.213 Sum_probs=87.0
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..++++.+. ..+|+|+|+++.+++.| .+++++++|..+. . ...
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~---~~~i~gvDi~~~~~~~a-------------~~~~~~~~D~~~~---~-~~~ 97 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGT---AYRFVGVEIDPKALDLP-------------PWAEGILADFLLW---E-PGE 97 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCS---CSEEEEEESCTTTCCCC-------------TTEEEEESCGGGC---C-CSS
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCC---CCeEEEEECCHHHHHhC-------------CCCcEEeCChhhc---C-ccC
Confidence 35679999999999999999988632 47999999999998776 2467777665433 2 234
Q ss_pred cEEEEEEeCCCCCCCCCc-----eeec---------------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHH
Q 041272 173 AVRLVAFNLGYLPGGDKS-----VITT---------------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEA 232 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~-----~~~~---------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 232 (267)
.||+|++|++|....... .... ......+++.+.++|+|||+++++.....-.. .....
T Consensus 98 ~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~-~~~~~ 176 (421)
T 2ih2_A 98 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVL-EDFAL 176 (421)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTC-GGGHH
T ss_pred CCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcC-ccHHH
Confidence 799999999986654310 0000 01234779999999999999999887542211 12344
Q ss_pred HHHHHHh
Q 041272 233 VEAFARS 239 (267)
Q Consensus 233 ~~~~~~~ 239 (267)
+.+++..
T Consensus 177 lr~~l~~ 183 (421)
T 2ih2_A 177 LREFLAR 183 (421)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-11 Score=100.14 Aligned_cols=144 Identities=17% Similarity=0.074 Sum_probs=93.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+..+|||||||+|.++..++ + +.+|+|+|+++.+++.+++++..++ .+..+...| +....++.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~----~~~y~a~DId~~~i~~ar~~~~~~g-----~~~~~~v~D---~~~~~~~~- 167 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---G----IASVWGCDIHQGLGDVITPFAREKD-----WDFTFALQD---VLCAPPAE- 167 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---T----CSEEEEEESBHHHHHHHHHHHHHTT-----CEEEEEECC---TTTSCCCC-
T ss_pred CCCCeEEEecCCccHHHHHhc---c----CCeEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEee---cccCCCCC-
Confidence 457799999999999999877 2 4899999999999999999988866 455665433 33333333
Q ss_pred cEEEEEEeCCCCCCCCCceeechh-hHHHHHHHHHhcccCCcEEEEEEecCCCCChh---hHHHHHHHHHhCCCCceEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSE-TTKMALEAAERILIPGGLISMVVYVGHPGGRE---ELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~ 248 (267)
.+|+++... .+++.+ ..+...-++.+.|+++|+++- .....-.+.. +......|.+.+....+.+.
T Consensus 168 ~~DvvLllk---------~lh~LE~q~~~~~~~ll~aL~~~~vvVs-fPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~ 237 (253)
T 3frh_A 168 AGDLALIFK---------LLPLLEREQAGSAMALLQSLNTPRMAVS-FPTRSLGGRGKGMEANYAAWFEGGLPAEFEIED 237 (253)
T ss_dssp BCSEEEEES---------CHHHHHHHSTTHHHHHHHHCBCSEEEEE-EECC-----------CHHHHHHHHSCTTEEEEE
T ss_pred CcchHHHHH---------HHHHhhhhchhhHHHHHHHhcCCCEEEE-cChHHhcCCCcchhhHHHHHHHHHhhccchhhh
Confidence 799998883 344332 222333488889999988743 3222211111 12233455566666667777
Q ss_pred EEeeecCCCCceEEEeec
Q 041272 249 KFQMLNRPLAPVLVFLFK 266 (267)
Q Consensus 249 ~~~~~~~~~~p~~~~~~k 266 (267)
++.+-| ..+++|+|
T Consensus 238 ~~~~~n----El~~~i~~ 251 (253)
T 3frh_A 238 KKTIGT----ELIYLIKK 251 (253)
T ss_dssp EEEETT----EEEEEEEE
T ss_pred heecCc----eEEEEEec
Confidence 776644 56777766
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-12 Score=106.72 Aligned_cols=147 Identities=10% Similarity=0.058 Sum_probs=94.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.+..+|||||||+|-++..++... |..+|+++|+++.|++.+++++..++ .+..+... |+....+ .
T Consensus 130 i~~p~~VLDLGCG~GpLAl~~~~~~----p~a~y~a~DId~~~le~a~~~l~~~g-----~~~~~~v~---D~~~~~p-~ 196 (281)
T 3lcv_B 130 LPRPNTLRDLACGLNPLAAPWMGLP----AETVYIASDIDARLVGFVDEALTRLN-----VPHRTNVA---DLLEDRL-D 196 (281)
T ss_dssp SCCCSEEEETTCTTGGGCCTTTTCC----TTCEEEEEESBHHHHHHHHHHHHHTT-----CCEEEEEC---CTTTSCC-C
T ss_pred cCCCceeeeeccCccHHHHHHHhhC----CCCEEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEe---eecccCC-C
Confidence 4556799999999999999998764 35899999999999999999999877 23455442 2333332 3
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhh--HHHHHHHHHhcccCCcEEEEEEe--c-CCCCChhhHHHHHHHHHhCCCCceE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSET--TKMALEAAERILIPGGLISMVVY--V-GHPGGREELEAVEAFARSLSVDDWI 246 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (267)
..+|+++++. .+++.++ ....+ ++++.|+|+|+++-... . +...+.+ ......|.+.+...+++
T Consensus 197 ~~~DvaL~lk---------ti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~-~~Y~~~~e~~~~~~g~~ 265 (281)
T 3lcv_B 197 EPADVTLLLK---------TLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMF-QNYSQSFESQARERSCR 265 (281)
T ss_dssp SCCSEEEETT---------CHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHH-HHHHHHHHHHHHHHTCC
T ss_pred CCcchHHHHH---------HHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchh-hHHHHHHHHHHHhcCCc
Confidence 4799999883 4443332 23455 89999999999854322 1 1122222 22233444444445667
Q ss_pred EEEEeeecCCCCceEEEeec
Q 041272 247 CCKFQMLNRPLAPVLVFLFK 266 (267)
Q Consensus 247 ~~~~~~~~~~~~p~~~~~~k 266 (267)
+.+..+-| ..+++|+|
T Consensus 266 ~~~~~~~n----El~y~i~k 281 (281)
T 3lcv_B 266 IQRLEIGN----ELIYVIQK 281 (281)
T ss_dssp EEEEEETT----EEEEEEC-
T ss_pred eeeeeecC----eeEEEecC
Confidence 66666643 45555544
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=105.12 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=78.5
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..++ .+|+|+|+|+. ++.++.++..+ ...++
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~---------~~v~~~D~s~~-------------------~~~~~~~d~~~---~~~~~ 113 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR---------NPVHCFDLASL-------------------DPRVTVCDMAQ---VPLED 113 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC---------SCEEEEESSCS-------------------STTEEESCTTS---CSCCT
T ss_pred cCCCCeEEEECCcCCHHHHHhh---------ccEEEEeCCCC-------------------CceEEEecccc---CCCCC
Confidence 3577899999999999987763 47999999987 12344444433 22334
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (267)
..||+|+++. ++++ .+...+++++.++|||||++++.++..... ....+..+++ ..+|.++...
T Consensus 114 ~~fD~v~~~~---------~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~~~~~~l~---~~Gf~~~~~~ 177 (215)
T 2zfu_A 114 ESVDVAVFCL---------SLMG-TNIRDFLEEANRVLKPGGLLKVAEVSSRFE---DVRTFLRAVT---KLGFKIVSKD 177 (215)
T ss_dssp TCEEEEEEES---------CCCS-SCHHHHHHHHHHHEEEEEEEEEEECGGGCS---CHHHHHHHHH---HTTEEEEEEE
T ss_pred CCEeEEEEeh---------hccc-cCHHHHHHHHHHhCCCCeEEEEEEcCCCCC---CHHHHHHHHH---HCCCEEEEEe
Confidence 5799999883 2332 566799999999999999999987643221 2233444444 4568777654
Q ss_pred e
Q 041272 252 M 252 (267)
Q Consensus 252 ~ 252 (267)
.
T Consensus 178 ~ 178 (215)
T 2zfu_A 178 L 178 (215)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-12 Score=108.33 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=64.6
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++...+ ...+++++++|..++. .+
T Consensus 25 ~~~~~~~VLDiG~G~G~lt~~L~~~------~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~D~~~~~---~~ 92 (285)
T 1zq9_A 25 ALRPTDVVLEVGPGTGNMTVKLLEK------AKKVVACELDPRLVAELHKRVQGTP---VASKLQVLVGDVLKTD---LP 92 (285)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEESCTTTSC---CC
T ss_pred CCCCCCEEEEEcCcccHHHHHHHhh------CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcceeccc---ch
Confidence 4567889999999999999999998 3689999999999999999987655 2368999987765431 11
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
.||.|++|++|
T Consensus 93 --~fD~vv~nlpy 103 (285)
T 1zq9_A 93 --FFDTCVANLPY 103 (285)
T ss_dssp --CCSEEEEECCG
T ss_pred --hhcEEEEecCc
Confidence 58999999765
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-12 Score=107.65 Aligned_cols=102 Identities=10% Similarity=-0.015 Sum_probs=77.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..+.+|||||||+|..+..++++ + .+|+++|+++.+++.|++++..........+++++.+|..+. . .
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-----~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~---~---~ 138 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-----THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD---I---K 138 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-----CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC---C---C
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH---H---h
Confidence 35679999999999999999876 2 699999999999999999875421000135788887665433 2 4
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+||+|+.+.. ++..+++++.++|||||++++...
T Consensus 139 ~fD~Ii~d~~--------------dp~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 139 KYDLIFCLQE--------------PDIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp CEEEEEESSC--------------CCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hCCEEEECCC--------------ChHHHHHHHHHhcCCCcEEEEEcC
Confidence 7999999831 112489999999999999988654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-12 Score=109.61 Aligned_cols=108 Identities=18% Similarity=0.087 Sum_probs=72.2
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeC----ChHHHHHHHHHHhhccccccccceEEEec-Chhhh
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI----QSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHSRM 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~----s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l 164 (267)
..++++.+|||+|||+|.++..++++ ++|+|||+ ++.+++.+ ..+..+ ..++.++++ +..++
T Consensus 78 ~~~~~g~~VLDlGcG~G~~s~~la~~-------~~V~gvD~~~~~~~~~~~~~--~~~~~~----~~~v~~~~~~D~~~l 144 (305)
T 2p41_A 78 NLVTPEGKVVDLGCGRGGWSYYCGGL-------KNVREVKGLTKGGPGHEEPI--PMSTYG----WNLVRLQSGVDVFFI 144 (305)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTS-------TTEEEEEEECCCSTTSCCCC--CCCSTT----GGGEEEECSCCTTTS
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHhc-------CCEEEEeccccCchhHHHHH--HhhhcC----CCCeEEEeccccccC
Confidence 34678899999999999999999987 36999999 56544211 111111 257888876 54333
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhh--HHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET--TKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. ..+||+|++++... .. ....+. ...+++.+.++|||||.+++..+
T Consensus 145 ---~--~~~fD~V~sd~~~~-~g----~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 145 ---P--PERCDTLLCDIGES-SP----NPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp ---C--CCCCSEEEECCCCC-CS----SHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred ---C--cCCCCEEEECCccc-cC----cchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 2 23799999985431 11 011111 12588999999999999988665
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-11 Score=107.84 Aligned_cols=133 Identities=12% Similarity=0.037 Sum_probs=93.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||||||+|..+..+++.+ |+.+++++|+ +.+++.|++ ..+++++.+|..+ ..+ .
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p-~ 259 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHY----PTIKGVNFDL-PHVISEAPQ----------FPGVTHVGGDMFK---EVP-S 259 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC----TTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTT---CCC-C
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHC----CCCeEEEecC-HHHHHhhhh----------cCCeEEEeCCcCC---CCC-C
Confidence 4567899999999999999999985 4589999999 888877654 2578998876543 222 2
Q ss_pred CcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEecCCCCC---hhh-------HH--------
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYVGHPGG---REE-------LE-------- 231 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~-------~~-------- 231 (267)
. |++++. .++|+. ++..++|+++++.|||||++++.+....... ... ..
T Consensus 260 ~--D~v~~~---------~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g 328 (364)
T 3p9c_A 260 G--DTILMK---------WILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGG 328 (364)
T ss_dssp C--SEEEEE---------SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred C--CEEEeh---------HHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCC
Confidence 2 888776 345432 4567899999999999999999876433211 000 00
Q ss_pred ---HHHHHHHhCCCCceEEEEEeeec
Q 041272 232 ---AVEAFARSLSVDDWICCKFQMLN 254 (267)
Q Consensus 232 ---~~~~~~~~l~~~~~~~~~~~~~~ 254 (267)
...+|.+.+...+|+.++...+.
T Consensus 329 ~~rt~~e~~~ll~~AGF~~v~~~~~~ 354 (364)
T 3p9c_A 329 RERYEREFQALARGAGFTGVKSTYIY 354 (364)
T ss_dssp CCCBHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccCCHHHHHHHHHHCCCceEEEEEcC
Confidence 02345555666788888776654
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.6e-12 Score=111.49 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=78.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||||||+|..+..+++..+ ..+++++|+ +.+++.|++ ..+++++.+|..+ .. +
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~-~- 266 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYP----LIKGINFDL-PQVIENAPP----------LSGIEHVGGDMFA---SV-P- 266 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTT---CC-C-
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCC----CCeEEEeCh-HHHHHhhhh----------cCCCEEEeCCccc---CC-C-
Confidence 45678999999999999999999863 589999999 999987764 2468888866543 12 2
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHH--HHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTK--MALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+|+|++. .++|+.++.. ++++++.++|||||++++.+..
T Consensus 267 -~~D~v~~~---------~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 267 -QGDAMILK---------AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp -CEEEEEEE---------SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -CCCEEEEe---------cccccCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 28999988 3555444444 9999999999999999998653
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.26 E-value=5e-11 Score=106.72 Aligned_cols=118 Identities=13% Similarity=0.153 Sum_probs=85.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCC----------------------------------CCcEEEEEeCChHHHH
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADES----------------------------------SAGCVYGLDIQSEALK 136 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~----------------------------------p~~~v~giD~s~~~i~ 136 (267)
...++.+|||++||+|.+++.+|......- +..+|+|+|+++.+++
T Consensus 192 ~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~ 271 (385)
T 3ldu_A 192 PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESID 271 (385)
T ss_dssp CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHH
T ss_pred CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHH
Confidence 346788999999999999999987632100 1157999999999999
Q ss_pred HHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccC--CcE
Q 041272 137 STSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP--GGL 214 (267)
Q Consensus 137 ~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkp--gG~ 214 (267)
.|++|+..++ ...++++.+.|..++. . ...+|+|++|++|... ........++.+++.+.||+ ||.
T Consensus 272 ~Ar~Na~~~g---l~~~i~~~~~D~~~l~---~-~~~~D~Iv~NPPyg~r-----l~~~~~l~~ly~~lg~~lk~~~g~~ 339 (385)
T 3ldu_A 272 IARENAEIAG---VDEYIEFNVGDATQFK---S-EDEFGFIITNPPYGER-----LEDKDSVKQLYKELGYAFRKLKNWS 339 (385)
T ss_dssp HHHHHHHHHT---CGGGEEEEECCGGGCC---C-SCBSCEEEECCCCCCS-----HHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred HHHHHHHHcC---CCCceEEEECChhhcC---c-CCCCcEEEECCCCcCc-----cCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 9999999987 4458999987765543 2 2379999999877321 11123445666767667766 888
Q ss_pred EEEEEe
Q 041272 215 ISMVVY 220 (267)
Q Consensus 215 l~i~~~ 220 (267)
+++.+.
T Consensus 340 ~~iit~ 345 (385)
T 3ldu_A 340 YYLITS 345 (385)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 877765
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=109.00 Aligned_cols=101 Identities=11% Similarity=0.118 Sum_probs=78.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|..+..+++.. |+.+++++|+ +.+++.|++ ..+++++.+|..+ ..+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~p-- 245 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETF----PKLKCIVFDR-PQVVENLSG----------SNNLTYVGGDMFT---SIP-- 245 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHC----TTCEEEEEEC-HHHHTTCCC----------BTTEEEEECCTTT---CCC--
T ss_pred cccCceEEEeCCCccHHHHHHHHHC----CCCeEEEeeC-HHHHhhccc----------CCCcEEEeccccC---CCC--
Confidence 5567899999999999999999985 3589999999 999987765 1358888766532 222
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhH--HHHHHHHHhcccC---CcEEEEEEecC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETT--KMALEAAERILIP---GGLISMVVYVG 222 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~ 222 (267)
.||++++. .++|+.++. .++++++.++||| ||++++.+...
T Consensus 246 -~~D~v~~~---------~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 246 -NADAVLLK---------YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp -CCSEEEEE---------SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred -CccEEEee---------hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence 38999887 345544444 4999999999999 99999987643
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-10 Score=103.85 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=86.3
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCC----------------------------------CcEEEEEeCChHHH
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESS----------------------------------AGCVYGLDIQSEAL 135 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p----------------------------------~~~v~giD~s~~~i 135 (267)
....++..|||.+||+|.+++.+|.......| ..+|+|+|+++.|+
T Consensus 190 ~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al 269 (384)
T 3ldg_A 190 SNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMV 269 (384)
T ss_dssp TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH
T ss_pred hCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHH
Confidence 34567889999999999999999876421001 14699999999999
Q ss_pred HHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccC--Cc
Q 041272 136 KSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP--GG 213 (267)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkp--gG 213 (267)
+.|++|++.++ ...+++++++|..++. .+ ..||+|++|+||--. +.......++.+++.+.||+ ||
T Consensus 270 ~~Ar~Na~~~g---l~~~I~~~~~D~~~l~---~~-~~fD~Iv~NPPYG~r-----l~~~~~l~~ly~~lg~~lk~~~g~ 337 (384)
T 3ldg_A 270 EIARKNAREVG---LEDVVKLKQMRLQDFK---TN-KINGVLISNPPYGER-----LLDDKAVDILYNEMGETFAPLKTW 337 (384)
T ss_dssp HHHHHHHHHTT---CTTTEEEEECCGGGCC---CC-CCSCEEEECCCCTTT-----TSCHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHcC---CCCceEEEECChHHCC---cc-CCcCEEEECCchhhc-----cCCHHHHHHHHHHHHHHHhhCCCc
Confidence 99999999988 4557999987775543 22 379999999877211 11123445566666666665 99
Q ss_pred EEEEEEe
Q 041272 214 LISMVVY 220 (267)
Q Consensus 214 ~l~i~~~ 220 (267)
.+++.+.
T Consensus 338 ~~~iit~ 344 (384)
T 3ldg_A 338 SQFILTN 344 (384)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 9988765
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-11 Score=110.16 Aligned_cols=124 Identities=21% Similarity=0.151 Sum_probs=87.7
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCC---------CCcEEEEEeCChHHHHHHHHHHhhcccccccc-ceEEEecCh
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADES---------SAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG-LVKLFNMCH 161 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~---------p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~-~v~~~~~~~ 161 (267)
..++.+|||.|||+|.++..+++++.... +..+++|+|+++.+++.|+.++..++ ... ++.+++++.
T Consensus 169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g---~~~~~~~i~~gD~ 245 (445)
T 2okc_A 169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG---IGTDRSPIVCEDS 245 (445)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT---CCSSCCSEEECCT
T ss_pred CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC---CCcCCCCEeeCCC
Confidence 34678999999999999999988642100 02579999999999999999998776 211 566777654
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCcee--------echhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVI--------TTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~--------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
... .. ...||+|++|+++......... ........+++.+.+.|||||+++++...+
T Consensus 246 l~~---~~-~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~ 310 (445)
T 2okc_A 246 LEK---EP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN 310 (445)
T ss_dssp TTS---CC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred CCC---cc-cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence 322 11 2379999999988544321100 011223578999999999999999988643
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.4e-11 Score=105.46 Aligned_cols=118 Identities=10% Similarity=0.091 Sum_probs=84.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCC----------------------------------CcEEEEEeCChHHHH
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESS----------------------------------AGCVYGLDIQSEALK 136 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p----------------------------------~~~v~giD~s~~~i~ 136 (267)
...++..|||++||+|.+++.+|.......| ..+|+|+|+++.|++
T Consensus 198 ~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~ 277 (393)
T 3k0b_A 198 SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIE 277 (393)
T ss_dssp CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHH
Confidence 4567889999999999999999876421001 146999999999999
Q ss_pred HHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccC--CcE
Q 041272 137 STSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP--GGL 214 (267)
Q Consensus 137 ~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkp--gG~ 214 (267)
.|++|+..++ ...+++++++|..++. .+ ..||+|++|++|-.. .........+.+++.+.||+ ||.
T Consensus 278 ~Ar~Na~~~g---l~~~I~~~~~D~~~~~---~~-~~fD~Iv~NPPYg~r-----l~~~~~l~~ly~~lg~~lk~~~g~~ 345 (393)
T 3k0b_A 278 IAKQNAVEAG---LGDLITFRQLQVADFQ---TE-DEYGVVVANPPYGER-----LEDEEAVRQLYREMGIVYKRMPTWS 345 (393)
T ss_dssp HHHHHHHHTT---CTTCSEEEECCGGGCC---CC-CCSCEEEECCCCCCS-----HHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred HHHHHHHHcC---CCCceEEEECChHhCC---CC-CCCCEEEECCCCccc-----cCCchhHHHHHHHHHHHHhcCCCCE
Confidence 9999999988 3457999987775543 22 379999999876221 11123334555555555554 999
Q ss_pred EEEEEe
Q 041272 215 ISMVVY 220 (267)
Q Consensus 215 l~i~~~ 220 (267)
+++.+.
T Consensus 346 ~~iit~ 351 (393)
T 3k0b_A 346 VYVLTS 351 (393)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888765
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=7.6e-11 Score=101.32 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=70.9
Q ss_pred hcCCCCEEEEecCCC------ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE-EecChhh
Q 041272 91 VVRKGDTVVDATCGN------GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL-FNMCHSR 163 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~------G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~-~~~~~~~ 163 (267)
.++++.+|||+|||+ |. ..+++.++. +++|+|+|+|+. + .++++ +++|..+
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~---~~~V~gvDis~~-v----------------~~v~~~i~gD~~~ 117 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPT---GTLLVDSDLNDF-V----------------SDADSTLIGDCAT 117 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCT---TCEEEEEESSCC-B----------------CSSSEEEESCGGG
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCC---CCEEEEEECCCC-C----------------CCCEEEEECcccc
Confidence 467899999999955 65 556777653 589999999997 1 24667 7766644
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCcee--echhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVI--TTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+. . ...||+|++|+..-........ .......++++++.++|||||++++..+.
T Consensus 118 ~~---~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 118 VH---T-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp CC---C-SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CC---c-cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 32 2 2479999998532100000001 11234468999999999999999998764
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=105.39 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=61.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|++++...+ ..+++++.+|..++ ..
T Consensus 39 ~~~~~~~VLDiG~G~G~lt~~La~~------~~~v~~vDi~~~~~~~a~~~~~~~~----~~~v~~~~~D~~~~---~~- 104 (299)
T 2h1r_A 39 KIKSSDIVLEIGCGTGNLTVKLLPL------AKKVITIDIDSRMISEVKKRCLYEG----YNNLEVYEGDAIKT---VF- 104 (299)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHTTT------SSEEEEECSCHHHHHHHHHHHHHTT----CCCEEC----CCSS---CC-
T ss_pred CCCCcCEEEEEcCcCcHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEECchhhC---Cc-
Confidence 4567889999999999999999987 3699999999999999999987665 46788887665433 22
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
..||.|++|++|
T Consensus 105 -~~~D~Vv~n~py 116 (299)
T 2h1r_A 105 -PKFDVCTANIPY 116 (299)
T ss_dssp -CCCSEEEEECCG
T ss_pred -ccCCEEEEcCCc
Confidence 268999999765
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.23 E-value=9.2e-13 Score=110.83 Aligned_cols=112 Identities=18% Similarity=0.203 Sum_probs=78.6
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++.. ..+++++++|..++. ...
T Consensus 26 ~~~~~~~VLDiG~G~G~~~~~l~~~------~~~v~~id~~~~~~~~a~~~~~~------~~~v~~~~~D~~~~~--~~~ 91 (245)
T 1yub_A 26 NLKETDTVYEIGTGKGHLTTKLAKI------SKQVTSIELDSHLFNLSSEKLKL------NTRVTLIHQDILQFQ--FPN 91 (245)
T ss_dssp CCCSSEEEEECSCCCSSCSHHHHHH------SSEEEESSSSCSSSSSSSCTTTT------CSEEEECCSCCTTTT--CCC
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHh------CCeEEEEECCHHHHHHHHHHhcc------CCceEEEECChhhcC--ccc
Confidence 4567889999999999999999988 37899999999999999988762 357899887765543 121
Q ss_pred CCcEEEEEEeCCCCCCCCCceee---chhhHHHHH----HHHHhcccCCcEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVIT---TSETTKMAL----EAAERILIPGGLISMV 218 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~---~~~~~~~~l----~~~~~~LkpgG~l~i~ 218 (267)
+.+| .|++|++|..... .+.+ +......++ +.+.++|||||.+++.
T Consensus 92 ~~~f-~vv~n~Py~~~~~-~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 92 KQRY-KIVGNIPYHLSTQ-IIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp SSEE-EEEEECCSSSCHH-HHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred CCCc-EEEEeCCccccHH-HHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 2468 8899987743210 0000 001112233 6688999999987653
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=98.13 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=64.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~ 169 (267)
.+.++.+|||||||+|.++..+++. +.+|+|+|++++|++.+++++.. ..+++++++|..++.- ...
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~avEid~~~~~~~~~~~~~------~~~v~~i~~D~~~~~~~~~~ 93 (255)
T 3tqs_A 26 HPQKTDTLVEIGPGRGALTDYLLTE------CDNLALVEIDRDLVAFLQKKYNQ------QKNITIYQNDALQFDFSSVK 93 (255)
T ss_dssp CCCTTCEEEEECCTTTTTHHHHTTT------SSEEEEEECCHHHHHHHHHHHTT------CTTEEEEESCTTTCCGGGSC
T ss_pred CCCCcCEEEEEcccccHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHhh------CCCcEEEEcchHhCCHHHhc
Confidence 4678899999999999999999987 36899999999999999998865 3589999988765421 111
Q ss_pred CCCcEEEEEEeCCC
Q 041272 170 KSTAVRLVAFNLGY 183 (267)
Q Consensus 170 ~~~~~d~ii~~~~~ 183 (267)
.+.++| |++|++|
T Consensus 94 ~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 94 TDKPLR-VVGNLPY 106 (255)
T ss_dssp CSSCEE-EEEECCH
T ss_pred cCCCeE-EEecCCc
Confidence 134677 9999766
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.1e-11 Score=103.04 Aligned_cols=84 Identities=20% Similarity=0.331 Sum_probs=69.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++.++ +++|+|+|+|+.|++.|+++++.++ .++++++++..++...+..
T Consensus 23 ~~~~g~~vLD~g~G~G~~s~~la~~~~----~~~VigvD~d~~al~~A~~~~~~~g-----~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 23 KPEDEKIILDCTVGEGGHSRAILEHCP----GCRIIGIDVDSEVLRIAEEKLKEFS-----DRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCT----TCEEEEEESCHHHHHHHHHHTGGGT-----TTEEEEECCGGGHHHHHHH
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEECCHHHHHHHHHh
Confidence 456889999999999999999999863 4799999999999999999998754 5899999988877543211
Q ss_pred --CCcEEEEEEeCCC
Q 041272 171 --STAVRLVAFNLGY 183 (267)
Q Consensus 171 --~~~~d~ii~~~~~ 183 (267)
...||.|++|+++
T Consensus 94 ~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 94 LGIEKVDGILMDLGV 108 (301)
T ss_dssp TTCSCEEEEEEECSC
T ss_pred cCCCCCCEEEEcCcc
Confidence 1369999998764
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=103.95 Aligned_cols=118 Identities=13% Similarity=0.111 Sum_probs=80.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCCh-------HHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS-------EALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~-------~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
+.++.+|||+|||+|.+++.+|+. +++|+|+|+|+ ++++.|++|++.++ ...++++++++..++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~------g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~---~~~ri~~~~~d~~~~ 151 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL------GLTVTAFEQHPAVACLLSDGIRRALLNPETQD---TAARINLHFGNAAEQ 151 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT------TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHH---HHTTEEEEESCHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh------CCEEEEEECChhhhHHHHHHHHHHHhHHHhhC---CccCeEEEECCHHHH
Confidence 446789999999999999999986 36899999999 99999999988776 335599999888775
Q ss_pred hhcCCC-CCcEEEEEEeCCCCCCCCCce----e-------echhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPK-STAVRLVAFNLGYLPGGDKSV----I-------TTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~-~~~~d~ii~~~~~lp~~d~~~----~-------~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...... ..+||+|++|+++.+...... . ....+..++++.+.++.+. ++++-..
T Consensus 152 l~~~~~~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p 217 (258)
T 2r6z_A 152 MPALVKTQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRP 217 (258)
T ss_dssp HHHHHHHHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEE
T ss_pred HHhhhccCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcC
Confidence 432211 036999999987743321100 0 0123456677777777543 4444333
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=99.82 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=69.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+++|+.++|..||.|..+..+++.+++ .++|+|+|.++.+++.|+ ++. ..++++++++..++...+..
T Consensus 54 ~i~pggiyVD~TlG~GGHS~~iL~~lg~---~GrVig~D~Dp~Al~~A~-rL~-------~~Rv~lv~~nF~~l~~~L~~ 122 (347)
T 3tka_A 54 NIRPDGIYIDGTFGRGGHSRLILSQLGE---EGRLLAIDRDPQAIAVAK-TID-------DPRFSIIHGPFSALGEYVAE 122 (347)
T ss_dssp CCCTTCEEEESCCTTSHHHHHHHTTCCT---TCEEEEEESCHHHHHHHT-TCC-------CTTEEEEESCGGGHHHHHHH
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHH-hhc-------CCcEEEEeCCHHHHHHHHHh
Confidence 4678999999999999999999998865 689999999999999994 441 36899999999988775533
Q ss_pred C---CcEEEEEEeCCC
Q 041272 171 S---TAVRLVAFNLGY 183 (267)
Q Consensus 171 ~---~~~d~ii~~~~~ 183 (267)
. ..+|.|++|+|+
T Consensus 123 ~g~~~~vDgILfDLGV 138 (347)
T 3tka_A 123 RDLIGKIDGILLDLGV 138 (347)
T ss_dssp TTCTTCEEEEEEECSC
T ss_pred cCCCCcccEEEECCcc
Confidence 2 269999999988
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.2e-11 Score=101.80 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=64.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++++|||||||+|.++..+++. +.+|+|||+++.+++.+++++.. ..+++++++|..++. .+
T Consensus 47 ~~~~~~~VLEIG~G~G~lT~~La~~------~~~V~aVEid~~li~~a~~~~~~------~~~v~vi~gD~l~~~---~~ 111 (295)
T 3gru_A 47 NLTKDDVVLEIGLGKGILTEELAKN------AKKVYVIEIDKSLEPYANKLKEL------YNNIEIIWGDALKVD---LN 111 (295)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCGGGHHHHHHHHHH------CSSEEEEESCTTTSC---GG
T ss_pred CCCCcCEEEEECCCchHHHHHHHhc------CCEEEEEECCHHHHHHHHHHhcc------CCCeEEEECchhhCC---cc
Confidence 4678899999999999999999998 37999999999999999999874 368999987765432 12
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
+..||.|++|++|
T Consensus 112 ~~~fD~Iv~NlPy 124 (295)
T 3gru_A 112 KLDFNKVVANLPY 124 (295)
T ss_dssp GSCCSEEEEECCG
T ss_pred cCCccEEEEeCcc
Confidence 2358999999765
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-10 Score=94.24 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=61.6
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++.. ..+++++++|..++.- ..
T Consensus 27 ~~~~~~~VLDiG~G~G~lt~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~------~~~v~~~~~D~~~~~~--~~ 92 (244)
T 1qam_A 27 RLNEHDNIFEIGSGKGHFTLELVQR------CNFVTAIEIDHKLCKTTENKLVD------HDNFQVLNKDILQFKF--PK 92 (244)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHTTT------CCSEEEECCCGGGCCC--CS
T ss_pred CCCCCCEEEEEeCCchHHHHHHHHc------CCeEEEEECCHHHHHHHHHhhcc------CCCeEEEEChHHhCCc--cc
Confidence 3567889999999999999999998 37899999999999999998864 2578999877655421 11
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
+.++ .+++|++|
T Consensus 93 ~~~~-~vv~nlPy 104 (244)
T 1qam_A 93 NQSY-KIFGNIPY 104 (244)
T ss_dssp SCCC-EEEEECCG
T ss_pred CCCe-EEEEeCCc
Confidence 2345 68888766
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.2e-11 Score=105.91 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=67.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc--cccccccceEEEecChhhhhhcC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT--TSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
.+.+|.+|||+|||+|..++.+++. +.+|+|+|+|+.+++.|++|++.+ + ..+++++++|..+.....
T Consensus 90 ~l~~g~~VLDLgcG~G~~al~LA~~------g~~V~~VD~s~~~l~~Ar~N~~~~~~g----l~~i~~i~~Da~~~L~~~ 159 (410)
T 3ll7_A 90 FIREGTKVVDLTGGLGIDFIALMSK------ASQGIYIERNDETAVAARHNIPLLLNE----GKDVNILTGDFKEYLPLI 159 (410)
T ss_dssp GSCTTCEEEESSCSSSHHHHHHHTT------CSEEEEEESCHHHHHHHHHHHHHHSCT----TCEEEEEESCGGGSHHHH
T ss_pred hcCCCCEEEEeCCCchHHHHHHHhc------CCEEEEEECCHHHHHHHHHhHHHhccC----CCcEEEEECcHHHhhhhc
Confidence 3456899999999999999999987 479999999999999999999987 6 368999998877642221
Q ss_pred CCCCcEEEEEEeCCCCC
Q 041272 169 PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp 185 (267)
++..||+|++|+++-.
T Consensus 160 -~~~~fDvV~lDPPrr~ 175 (410)
T 3ll7_A 160 -KTFHPDYIYVDPARRS 175 (410)
T ss_dssp -HHHCCSEEEECCEEC-
T ss_pred -cCCCceEEEECCCCcC
Confidence 1236999999987754
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.5e-11 Score=104.44 Aligned_cols=101 Identities=10% Similarity=0.072 Sum_probs=77.6
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||||||+|.++..+++..+ +.+++++|+ +.+++.|++ ..+++++.++..+ .. +
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~-~- 250 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIFP----HLKCTVFDQ-PQVVGNLTG----------NENLNFVGGDMFK---SI-P- 250 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHCT----TSEEEEEEC-HHHHSSCCC----------CSSEEEEECCTTT---CC-C-
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHCC----CCeEEEecc-HHHHhhccc----------CCCcEEEeCccCC---CC-C-
Confidence 35678999999999999999999863 589999999 788876654 2458888766543 12 2
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhH--HHHHHHHHhcccC---CcEEEEEEecC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETT--KMALEAAERILIP---GGLISMVVYVG 222 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~ 222 (267)
.+|++++. .++|+.++. .++++++.++||| ||++++.+...
T Consensus 251 -~~D~v~~~---------~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 251 -SADAVLLK---------WVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISI 296 (358)
T ss_dssp -CCSEEEEE---------SCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred -CceEEEEc---------ccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence 48999888 355544443 4999999999999 99999987643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.6e-10 Score=106.17 Aligned_cols=124 Identities=13% Similarity=0.087 Sum_probs=84.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCC--------------------------------------CCcEEEEEeCCh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADES--------------------------------------SAGCVYGLDIQS 132 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~--------------------------------------p~~~v~giD~s~ 132 (267)
...++..|||.+||+|.+++.+|......- +..+|+|+|+++
T Consensus 187 ~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~ 266 (703)
T 3v97_A 187 GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDA 266 (703)
T ss_dssp TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCH
T ss_pred CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCH
Confidence 346788999999999999999887531000 125799999999
Q ss_pred HHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC
Q 041272 133 EALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212 (267)
Q Consensus 133 ~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg 212 (267)
.|++.|++|+..++ +...+++.++|..++.... ....+|+|++|+||=-.. .-.......-+.+.++.+.+.||
T Consensus 267 ~av~~A~~N~~~ag---v~~~i~~~~~D~~~~~~~~-~~~~~d~Iv~NPPYG~Rl--g~~~~l~~ly~~l~~~lk~~~~g 340 (703)
T 3v97_A 267 RVIQRARTNARLAG---IGELITFEVKDVAQLTNPL-PKGPYGTVLSNPPYGERL--DSEPALIALHSLLGRIMKNQFGG 340 (703)
T ss_dssp HHHHHHHHHHHHTT---CGGGEEEEECCGGGCCCSC-TTCCCCEEEECCCCCC-----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcC---CCCceEEEECChhhCcccc-ccCCCCEEEeCCCccccc--cchhHHHHHHHHHHHHHHhhCCC
Confidence 99999999999988 4566899988776643221 122699999998871100 00001122233455566666799
Q ss_pred cEEEEEEe
Q 041272 213 GLISMVVY 220 (267)
Q Consensus 213 G~l~i~~~ 220 (267)
|.+++.+.
T Consensus 341 ~~~~ilt~ 348 (703)
T 3v97_A 341 WNLSLFSA 348 (703)
T ss_dssp CEEEEEES
T ss_pred CeEEEEeC
Confidence 99988653
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.8e-10 Score=103.31 Aligned_cols=127 Identities=17% Similarity=0.101 Sum_probs=89.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||.+||+|.+...+++++.. .+...++|+|+++.+++.|+.|+..++. ...++.+.++|.....-......
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~-~~~~~i~G~Eid~~~~~lA~~Nl~l~gi--~~~~~~I~~gDtL~~d~p~~~~~ 296 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQ-PQTVVYFGQELNTSTYNLARMNMILHGV--PIENQFLHNADTLDEDWPTQEPT 296 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSC-TTTCEEEEEESCHHHHHHHHHHHHHTTC--CGGGEEEEESCTTTSCSCCSSCC
T ss_pred CCCCEEeecccchhHHHHHHHHHHHh-ccCceEEEEECcHHHHHHHHHHHHHcCC--CcCccceEecceecccccccccc
Confidence 36789999999999999999988642 1246899999999999999999987771 11467777766432210011235
Q ss_pred cEEEEEEeCCCCCCCCCc--eee------------chhhHHHHHHHHHhccc-CCcEEEEEEecC
Q 041272 173 AVRLVAFNLGYLPGGDKS--VIT------------TSETTKMALEAAERILI-PGGLISMVVYVG 222 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~--~~~------------~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~ 222 (267)
.||+|++|+||...+... ... .......++..+.+.|| |||++.++.+.+
T Consensus 297 ~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g 361 (542)
T 3lkd_A 297 NFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG 361 (542)
T ss_dssp CBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred cccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence 799999999996443211 000 01112368999999999 999999988754
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.2e-10 Score=104.93 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=88.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCC--------------CcEEEEEeCChHHHHHHHHHHhhccccccccc----
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESS--------------AGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL---- 153 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p--------------~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~---- 153 (267)
..++.+|||.+||+|.++..+++.+....+ ..+++|+|+++.+++.|+.++..++ ...
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g----i~~~~~~ 242 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD----IEGNLDH 242 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT----CCCBGGG
T ss_pred cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC----CCccccc
Confidence 356789999999999999999887532110 1379999999999999999998766 222
Q ss_pred -eEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCc----ee-echhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 154 -VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKS----VI-TTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 154 -v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~----~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+.+++++....... ....||+|++|+||....... +. ........++..+.+.|||||++++++..+
T Consensus 243 ~~~I~~gDtL~~~~~--~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~ 315 (541)
T 2ar0_A 243 GGAIRLGNTLGSDGE--NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 315 (541)
T ss_dssp TBSEEESCTTSHHHH--TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred cCCeEeCCCcccccc--cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 66777665332211 124799999999885443211 00 011223478999999999999999988754
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.13 E-value=9.6e-11 Score=99.08 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=64.5
Q ss_pred cCCC--CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc----c-cccceEEEecChhhh
Q 041272 92 VRKG--DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK----A-EKGLVKLFNMCHSRM 164 (267)
Q Consensus 92 l~~~--~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~----~-~~~~v~~~~~~~~~l 164 (267)
++++ .+|||+|||+|..++.+|++ +++|++||+++.+++.++++++....+ . ...++++++++..++
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~------g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~ 157 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA 157 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH
Confidence 4567 89999999999999999997 368999999999877777776543210 1 125799999888776
Q ss_pred hhcCCCCCcEEEEEEeCCC
Q 041272 165 EEIVPKSTAVRLVAFNLGY 183 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~ 183 (267)
...... .||+|++|++|
T Consensus 158 L~~~~~--~fDvV~lDP~y 174 (258)
T 2oyr_A 158 LTDITP--RPQVVYLDPMF 174 (258)
T ss_dssp STTCSS--CCSEEEECCCC
T ss_pred HHhCcc--cCCEEEEcCCC
Confidence 443332 59999999887
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-11 Score=95.66 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=70.3
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...+++|.+|||+|||+ + ++|+|+.|++.|+++... ++++++++..++....
T Consensus 7 ~~g~~~g~~vL~~~~g~----------v----------~vD~s~~ml~~a~~~~~~--------~~~~~~~d~~~~~~~~ 58 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKS----------S----------PVEALKGLVDKLQALTGN--------EGRVSVENIKQLLQSA 58 (176)
T ss_dssp TTTCCTTSEEEEEECTT----------S----------CHHHHHHHHHHHHHHTTT--------TSEEEEEEGGGGGGGC
T ss_pred ccCCCCCCEEEEecCCc----------e----------eeeCCHHHHHHHHHhccc--------CcEEEEechhcCcccc
Confidence 33578999999999985 1 299999999999987532 4777777766554321
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeech-hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTS-ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.++.+||+|+++. ++++. ++..+++++++++|||||++++...
T Consensus 59 ~~~~~fD~V~~~~---------~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 59 HKESSFDIILSGL---------VPGSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp CCSSCEEEEEECC---------STTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCEeEEEECC---------hhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 2455899999873 22222 3447999999999999999998654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.7e-10 Score=96.19 Aligned_cols=77 Identities=18% Similarity=0.042 Sum_probs=62.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++ +|||||||+|.++..+++. +.+|+|+|+++.|++.+++++.. .+++++++|..++.-. .
T Consensus 44 ~~~~~-~VLEIG~G~G~lt~~L~~~------~~~V~avEid~~~~~~l~~~~~~-------~~v~vi~~D~l~~~~~--~ 107 (271)
T 3fut_A 44 RPFTG-PVFEVGPGLGALTRALLEA------GAEVTAIEKDLRLRPVLEETLSG-------LPVRLVFQDALLYPWE--E 107 (271)
T ss_dssp CCCCS-CEEEECCTTSHHHHHHHHT------TCCEEEEESCGGGHHHHHHHTTT-------SSEEEEESCGGGSCGG--G
T ss_pred CCCCC-eEEEEeCchHHHHHHHHHc------CCEEEEEECCHHHHHHHHHhcCC-------CCEEEEECChhhCChh--h
Confidence 46778 9999999999999999997 36899999999999999998763 4789998877554221 1
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
...+|.|++|++|
T Consensus 108 ~~~~~~iv~NlPy 120 (271)
T 3fut_A 108 VPQGSLLVANLPY 120 (271)
T ss_dssp SCTTEEEEEEECS
T ss_pred ccCccEEEecCcc
Confidence 1257999999877
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.3e-10 Score=90.05 Aligned_cols=103 Identities=7% Similarity=-0.021 Sum_probs=77.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccc--ccceEEEecChhhh----
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE--KGLVKLFNMCHSRM---- 164 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~--~~~v~~~~~~~~~l---- 164 (267)
.+.+..+|||+|| |+.|+.+|+.. +++|++||.+++..+.|++++++.+ . ..+++++.++....
T Consensus 27 ~l~~a~~VLEiGt--GySTl~lA~~~-----~g~VvtvE~d~~~~~~ar~~l~~~g---~~~~~~I~~~~gda~~~~~wg 96 (202)
T 3cvo_A 27 AYEEAEVILEYGS--GGSTVVAAELP-----GKHVTSVESDRAWARMMKAWLAANP---PAEGTEVNIVWTDIGPTGDWG 96 (202)
T ss_dssp HHHHCSEEEEESC--SHHHHHHHTST-----TCEEEEEESCHHHHHHHHHHHHHSC---CCTTCEEEEEECCCSSBCGGG
T ss_pred HhhCCCEEEEECc--hHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCCceEEEEeCchhhhccc
Confidence 4556789999998 58899999842 4899999999999999999999877 4 56899988775322
Q ss_pred -----------hhc------CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 165 -----------EEI------VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 165 -----------~~~------~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
..+ .....+||+|+.+- ......+..+.++|+|||++++
T Consensus 97 ~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg--------------~k~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 97 HPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDG--------------RFRVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp CBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECS--------------SSHHHHHHHHHHHCSSCEEEEE
T ss_pred ccccchhhhhHHHHhhhhhccccCCCCCEEEEeC--------------CCchhHHHHHHHhcCCCeEEEE
Confidence 111 11235799999983 1113667778899999999955
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-09 Score=103.64 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=83.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHH--HHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST--SSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a--~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
.+++.+|||.|||+|.++..++++++. ....+++|+|+++.+++.| +.++..+....-.....+..++..+... .
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~e-i~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~--~ 395 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNN-VMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP--E 395 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTT-CCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG--G
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcc-cCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccc--c
Confidence 346889999999999999999988642 0136899999999999999 5555442200001222344433322111 1
Q ss_pred CCCcEEEEEEeCCCCCCCCCceee--------------------chhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVIT--------------------TSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~--------------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
....||+|++|+||.......-.. .......+++.+.+.|+|||+++++.+.+
T Consensus 396 ~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 396 DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ 468 (878)
T ss_dssp GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence 124799999999995432211100 01124568899999999999999988754
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=96.26 Aligned_cols=128 Identities=14% Similarity=0.150 Sum_probs=93.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccc--cccceEEEecChhhhhhcC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA--EKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~ 168 (267)
.+++|++|||+++|+|.-|..+|+... ++.|+++|+++..++..++++++.+... ...++.+...|...+....
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~----~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~ 220 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGC----CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE 220 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTC----EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcC----CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc
Confidence 467899999999999999999998753 4789999999999999999998865211 1257888887776665544
Q ss_pred CCCCcEEEEEEeCCCCC------CCCCcee-e--------chhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 169 PKSTAVRLVAFNLGYLP------GGDKSVI-T--------TSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp------~~d~~~~-~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
. ..||.|+.|.+.-- ..+.... . ......++|..+.++|||||+|+.+++.-.+
T Consensus 221 ~--~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 221 G--DTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp T--TCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred c--ccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 3 36999999976411 1111111 1 1123467899999999999999888774433
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.1e-10 Score=102.95 Aligned_cols=122 Identities=15% Similarity=0.013 Sum_probs=82.0
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCC-----------CcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESS-----------AGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p-----------~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
.+|||.+||+|.+...+++.+....+ ...++|+|+++.+++.|+.|+..++ ...++.+.+++..
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g---i~~~i~i~~gDtL-- 320 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG---IDFNFGKKNADSF-- 320 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT---CCCBCCSSSCCTT--
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC---CCcccceeccchh--
Confidence 39999999999999888765420000 2589999999999999999998876 2333433444432
Q ss_pred hhcCCCCCcEEEEEEeCCCCCC-CCCce-------e----------e--chhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPG-GDKSV-------I----------T--TSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~-~d~~~-------~----------~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.........||+|++|+||... +.... . . .......+++.+.+.|||||++.++...+
T Consensus 321 ~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 321 LDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG 398 (544)
T ss_dssp TSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred cCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence 1111223579999999998542 21110 0 0 01112368999999999999999988744
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.1e-09 Score=90.15 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=61.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh--hhcC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM--EEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l--~~~~ 168 (267)
.+.++.+|||||||+|.++..+++.... .+++|+|+|+++.|++.++++. . .+++++++|..++ .+..
T Consensus 39 ~~~~~~~VLEIG~G~G~lt~~La~~~~~--~~~~V~avDid~~~l~~a~~~~---~-----~~v~~i~~D~~~~~~~~~~ 108 (279)
T 3uzu_A 39 RPERGERMVEIGPGLGALTGPVIARLAT--PGSPLHAVELDRDLIGRLEQRF---G-----ELLELHAGDALTFDFGSIA 108 (279)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHHCB--TTBCEEEEECCHHHHHHHHHHH---G-----GGEEEEESCGGGCCGGGGS
T ss_pred CCCCcCEEEEEccccHHHHHHHHHhCCC--cCCeEEEEECCHHHHHHHHHhc---C-----CCcEEEECChhcCChhHhc
Confidence 4678899999999999999999988421 0134999999999999999983 2 4789998887654 2222
Q ss_pred CCC-CcEEEEEEeCCC
Q 041272 169 PKS-TAVRLVAFNLGY 183 (267)
Q Consensus 169 ~~~-~~~d~ii~~~~~ 183 (267)
.+. ...+.|++|++|
T Consensus 109 ~~~~~~~~~vv~NlPY 124 (279)
T 3uzu_A 109 RPGDEPSLRIIGNLPY 124 (279)
T ss_dssp CSSSSCCEEEEEECCH
T ss_pred ccccCCceEEEEccCc
Confidence 111 134679999766
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=4.2e-09 Score=88.65 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=59.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++.++++ . ..+++++++|..++.-....
T Consensus 28 ~~~~~~~VLDiG~G~G~lt~~L~~~-~----~~~v~avEid~~~~~~~~~~-~-------~~~v~~i~~D~~~~~~~~~~ 94 (249)
T 3ftd_A 28 NIEEGNTVVEVGGGTGNLTKVLLQH-P----LKKLYVIELDREMVENLKSI-G-------DERLEVINEDASKFPFCSLG 94 (249)
T ss_dssp TCCTTCEEEEEESCHHHHHHHHTTS-C----CSEEEEECCCHHHHHHHTTS-C-------CTTEEEECSCTTTCCGGGSC
T ss_pred CCCCcCEEEEEcCchHHHHHHHHHc-C----CCeEEEEECCHHHHHHHHhc-c-------CCCeEEEEcchhhCChhHcc
Confidence 4567889999999999999999987 2 37999999999999999987 2 25789998877544211101
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
+ ++ .+++|++|
T Consensus 95 ~-~~-~vv~NlPy 105 (249)
T 3ftd_A 95 K-EL-KVVGNLPY 105 (249)
T ss_dssp S-SE-EEEEECCT
T ss_pred C-Cc-EEEEECch
Confidence 1 34 88999876
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=9e-10 Score=92.91 Aligned_cols=81 Identities=14% Similarity=0.029 Sum_probs=59.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh--hhcC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM--EEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l--~~~~ 168 (267)
.+.++++|||||||+|.++. +++ .+ ..+|+|+|+++.|++.+++++.. ..+++++++|..++ .+..
T Consensus 18 ~~~~~~~VLEIG~G~G~lt~-l~~-~~----~~~v~avEid~~~~~~a~~~~~~------~~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 18 NPQKGQAMVEIGPGLAALTE-PVG-ER----LDQLTVIELDRDLAARLQTHPFL------GPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHH-HHH-TT----CSCEEEECCCHHHHHHHHTCTTT------GGGEEEECSCGGGCCHHHHH
T ss_pred CCCCcCEEEEECCCCcHHHH-hhh-CC----CCeEEEEECCHHHHHHHHHHhcc------CCceEEEECchhhCCHHHhh
Confidence 46788899999999999999 654 21 12399999999999999998764 24799998887653 2221
Q ss_pred CCCCcEEEEEEeCCC
Q 041272 169 PKSTAVRLVAFNLGY 183 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~ 183 (267)
......+.|++|++|
T Consensus 86 ~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 86 EKMGQPLRVFGNLPY 100 (252)
T ss_dssp HHHTSCEEEEEECCT
T ss_pred cccCCceEEEECCCC
Confidence 000135899999877
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.8e-08 Score=83.41 Aligned_cols=130 Identities=12% Similarity=0.071 Sum_probs=95.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCC-CCCcEEEEEeCChH--------------------------HHHHHHHHHhhcc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADE-SSAGCVYGLDIQSE--------------------------ALKSTSSLLDKTT 146 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~-~p~~~v~giD~s~~--------------------------~i~~a~~~~~~~~ 146 (267)
..+.|||+|+..|+.++.+|..+... .++.+|+++|..+. .++.+++++++.+
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 34699999999999999998765310 02578999996531 4778899998877
Q ss_pred cccc-ccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCC
Q 041272 147 SKAE-KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPG 225 (267)
Q Consensus 147 ~~~~-~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 225 (267)
. ..+++++.++..+...... ..++|++..|. . .......+++.++..|+|||++++-++ ..
T Consensus 186 ---l~~~~I~li~Gda~etL~~~~-~~~~d~vfIDa----------D-~y~~~~~~Le~~~p~L~pGGiIv~DD~-~~-- 247 (282)
T 2wk1_A 186 ---LLDEQVRFLPGWFKDTLPTAP-IDTLAVLRMDG----------D-LYESTWDTLTNLYPKVSVGGYVIVDDY-MM-- 247 (282)
T ss_dssp ---CCSTTEEEEESCHHHHSTTCC-CCCEEEEEECC----------C-SHHHHHHHHHHHGGGEEEEEEEEESSC-TT--
T ss_pred ---CCcCceEEEEeCHHHHHhhCC-CCCEEEEEEcC----------C-ccccHHHHHHHHHhhcCCCEEEEEcCC-CC--
Confidence 3 3789999988865433332 34799999983 1 234456889999999999999987665 22
Q ss_pred ChhhHHHHHHHHHhCC
Q 041272 226 GREELEAVEAFARSLS 241 (267)
Q Consensus 226 ~~~~~~~~~~~~~~l~ 241 (267)
.....+++.+|.+..+
T Consensus 248 ~~G~~~Av~Ef~~~~~ 263 (282)
T 2wk1_A 248 CPPCKDAVDEYRAKFD 263 (282)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcC
Confidence 2445778888888765
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7e-09 Score=87.35 Aligned_cols=115 Identities=15% Similarity=0.182 Sum_probs=69.9
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||||||+|.++..+++..+ ...|+|+|+...+....... ...+ .++..+..+. +...+
T Consensus 70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~----~~~v~g~dVGvDl~~~pi~~-~~~g-----~~ii~~~~~~-dv~~l-- 136 (277)
T 3evf_A 70 GYVKLEGRVIDLGCGRGGWCYYAAAQKE----VSGVKGFTLGRDGHEKPMNV-QSLG-----WNIITFKDKT-DIHRL-- 136 (277)
T ss_dssp TSSCCCEEEEEETCTTCHHHHHHHTSTT----EEEEEEECCCCTTCCCCCCC-CBTT-----GGGEEEECSC-CTTTS--
T ss_pred CCCCCCCEEEEecCCCCHHHHHHHHhcC----CCcceeEEEeccCccccccc-CcCC-----CCeEEEeccc-eehhc--
Confidence 4578889999999999999999997643 36788999885431111000 0001 1333343332 22222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
.+..+|+|++|+..- .....+ ........++.+.++|||| |.+++-.+
T Consensus 137 ~~~~~DlVlsD~apn-sG~~~~--D~~rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 137 EPVKCDTLLCDIGES-SSSSVT--EGERTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp CCCCCSEEEECCCCC-CSCHHH--HHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCCCccEEEecCccC-cCchHH--HHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 234799999996331 111111 1111223578889999999 99999887
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-07 Score=80.41 Aligned_cols=117 Identities=15% Similarity=0.088 Sum_probs=85.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-cccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS-KAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+...+||-||-|.|..+..+++..+ ..+|+.||+++..++.|++.+..... ....++++++.+|....... ..
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~----v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~--~~ 155 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKN----VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ--TS 155 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTT----CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC--SS
T ss_pred CCCCeEEEECCCchHHHHHHHHcCC----cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh--cc
Confidence 4557999999999999999998743 37999999999999999998754211 11247899998877655433 23
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|+.+...-...... -...++++.+.+.|+|||+++....
T Consensus 156 ~~yDvIi~D~~dp~~~~~~-----L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 156 QTFDVIISDCTDPIGPGES-----LFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp CCEEEEEESCCCCCCTTCC-----SSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCEEEEeCCCcCCCchh-----hcCHHHHHHHHHHhCCCCEEEEecC
Confidence 4799999996431111111 1125799999999999999987543
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=86.38 Aligned_cols=79 Identities=25% Similarity=0.289 Sum_probs=66.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+++++.+||.+||.|..+..+++. +++|+|+|.++.+++.|++ +.. .++++++++..++...+..
T Consensus 19 ~~~~gg~~VD~T~G~GGHS~~il~~------~g~VigiD~Dp~Ai~~A~~-L~~-------~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 19 AVRPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAVARAKG-LHL-------PGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHH-TCC-------TTEEEEESCGGGHHHHHHH
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHC------CCEEEEEeCCHHHHHHHHh-hcc-------CCEEEEECCcchHHHHHHH
Confidence 4678999999999999999999997 3799999999999999998 643 4899999999988664322
Q ss_pred --CCcEEEEEEeCCC
Q 041272 171 --STAVRLVAFNLGY 183 (267)
Q Consensus 171 --~~~~d~ii~~~~~ 183 (267)
...+|.|++|+|+
T Consensus 85 ~g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 85 LGVERVDGILADLGV 99 (285)
T ss_dssp TTCSCEEEEEEECSC
T ss_pred cCCCCcCEEEeCCcc
Confidence 1369999999886
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-08 Score=96.42 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=74.6
Q ss_pred CCEEEEecCCCChH---HHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 95 GDTVVDATCGNGYD---TLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 95 ~~~VLDlGcG~G~~---~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+..|||+|||+|.+ ++.+++..+. ..+|++||.|+ +...|++..++++ +.++|++++++.+++. ++
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~---~vkVyAVEknp-~A~~a~~~v~~N~---~~dkVtVI~gd~eev~--LP-- 426 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADR---RIKLYAVEKNP-NAVVTLENWQFEE---WGSQVTVVSSDMREWV--AP-- 426 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTC---EEEEEEEESCH-HHHHHHHHHHHHT---TGGGEEEEESCTTTCC--CS--
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCC---CcEEEEEECCH-HHHHHHHHHHhcc---CCCeEEEEeCcceecc--CC--
Confidence 34799999999999 4555554322 24799999998 5668888888887 6789999998876653 22
Q ss_pred CcEEEEEEeC-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 172 TAVRLVAFNL-GYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 172 ~~~d~ii~~~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
.++|+||+-. |+.-. . +...+++...-|.|||||+++
T Consensus 427 EKVDIIVSEwMG~fLl------~--E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 427 EKADIIVSELLGSFAD------N--ELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp SCEEEEECCCCBTTBG------G--GCHHHHHHHHGGGEEEEEEEE
T ss_pred cccCEEEEEcCccccc------c--cCCHHHHHHHHHhcCCCcEEc
Confidence 3799999873 33111 1 223467777789999999985
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.1e-07 Score=80.77 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=65.5
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+++|++|||+||++|.+|..++++ +++|+|||+.+ |-. .+.. ..+|++++.|.. ...+
T Consensus 207 ~~l~~G~~vlDLGAaPGGWT~~l~~r------g~~V~aVD~~~-l~~----~l~~------~~~V~~~~~d~~---~~~~ 266 (375)
T 4auk_A 207 ERLANGMWAVDLGACPGGWTYQLVKR------NMWVYSVDNGP-MAQ----SLMD------TGQVTWLREDGF---KFRP 266 (375)
T ss_dssp HHSCTTCEEEEETCTTCHHHHHHHHT------TCEEEEECSSC-CCH----HHHT------TTCEEEECSCTT---TCCC
T ss_pred ccCCCCCEEEEeCcCCCHHHHHHHHC------CCEEEEEEhhh-cCh----hhcc------CCCeEEEeCccc---cccC
Confidence 35789999999999999999999988 57999999865 211 1111 468899886653 3344
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
+..++|++++|+.. .+......+..+...+..++.++
T Consensus 267 ~~~~~D~vvsDm~~----------~p~~~~~l~~~wl~~~~~~~aI~ 303 (375)
T 4auk_A 267 TRSNISWMVCDMVE----------KPAKVAALMAQWLVNGWCRETIF 303 (375)
T ss_dssp CSSCEEEEEECCSS----------CHHHHHHHHHHHHHTTSCSEEEE
T ss_pred CCCCcCEEEEcCCC----------ChHHhHHHHHHHHhccccceEEE
Confidence 45689999999522 23333445555554444445443
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.2e-08 Score=81.81 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=74.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhc------CCCCC--CcEEEEEeCCh---HHHH-----------HHHHHHhhccc----
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMV------ADESS--AGCVYGLDIQS---EALK-----------STSSLLDKTTS---- 147 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~------~~~~p--~~~v~giD~s~---~~i~-----------~a~~~~~~~~~---- 147 (267)
+..+|||+|+|+|+.++.+++.. .++.+ ..+++++|..+ +++. .|++.++....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 45699999999999998887753 22000 25899999887 4444 55665553100
Q ss_pred ------cccccceEEEecChhhhhhcCCC--CCcEEEEEEeCCCCCCCCCceeechh-hHHHHHHHHHhcccCCcEEE
Q 041272 148 ------KAEKGLVKLFNMCHSRMEEIVPK--STAVRLVAFNLGYLPGGDKSVITTSE-TTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 148 ------~~~~~~v~~~~~~~~~l~~~~~~--~~~~d~ii~~~~~lp~~d~~~~~~~~-~~~~~l~~~~~~LkpgG~l~ 216 (267)
..-..+++++.+|..+....... ...||+++.|.. -|.. .++ -..++++.+.++|||||+|+
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~f-sp~~------~p~lw~~~~l~~l~~~L~pGG~l~ 210 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGF-APAK------NPDMWTQNLFNAMARLARPGGTLA 210 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSS-CTTT------CGGGCCHHHHHHHHHHEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCC-Cccc------ChhhcCHHHHHHHHHHcCCCcEEE
Confidence 00124677888888775443322 126999999831 1111 111 02589999999999999986
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-08 Score=86.34 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=71.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||||||+|.++..+++..+ ...|+|+|+...+...+... ...+ .++.....+. ++..+ .
T Consensus 87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~g----v~sV~GvdvG~d~~~~pi~~-~~~g-----~~ii~~~~~~-dv~~l--~ 153 (282)
T 3gcz_A 87 YVKPTGIVVDLGCGRGGWSYYAASLKN----VKKVMAFTLGVQGHEKPIMR-TTLG-----WNLIRFKDKT-DVFNM--E 153 (282)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTT----EEEEEEECCCCTTSCCCCCC-CBTT-----GGGEEEECSC-CGGGS--C
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcC----CCeeeeEEeccCcccccccc-ccCC-----CceEEeeCCc-chhhc--C
Confidence 678999999999999999999997654 36899999987643222110 0011 1222222111 22222 2
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC--cEEEEEEec
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG--GLISMVVYV 221 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~i~~~~ 221 (267)
...+|+|++|+..- .....+++ ......++-+.++|+|| |.|++-.+.
T Consensus 154 ~~~~DvVLSDmApn-sG~~~~D~--~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 154 VIPGDTLLCDIGES-SPSIAVEE--QRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CCCCSEEEECCCCC-CSCHHHHH--HHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CCCcCEEEecCccC-CCChHHHH--HHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 34799999997442 22111111 12224578888999999 999998883
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.2e-08 Score=93.30 Aligned_cols=107 Identities=13% Similarity=0.034 Sum_probs=72.9
Q ss_pred CCEEEEecCCCChHHHH---HHHhcC---------CCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 95 GDTVVDATCGNGYDTLM---MLKMVA---------DESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~---la~~~~---------~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
+..|||+|||+|.++.. +++..+ . ..+|++||.|+.++...++... ++ +.++|+++.++.+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~---~~kVyAVEknp~A~~~l~~~~~-Ng---~~d~VtVI~gd~e 482 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESL---KVKLYIVEKNPNAIVTLKYMNV-RT---WKRRVTIIESDMR 482 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCC---EEEEEEEECCHHHHHHHHHHHH-HT---TTTCSEEEESCGG
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCcccccccccc---ccEEEEEeCChHHHHHHHHHHh-cC---CCCeEEEEeCchh
Confidence 35899999999999643 333222 1 2599999999988766555544 55 4577999999988
Q ss_pred hhhhc--CCCCCcEEEEEEeC-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 163 RMEEI--VPKSTAVRLVAFNL-GYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 163 ~l~~~--~~~~~~~d~ii~~~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
++.-. .....++|+||+-+ |++- ..+...++|..+-+.|||||+++
T Consensus 483 ev~lp~~~~~~ekVDIIVSElmGsfl--------~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 483 SLPGIAKDRGFEQPDIIVSELLGSFG--------DNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp GHHHHHHHTTCCCCSEEEECCCBTTB--------GGGSHHHHHHTTGGGSCTTCEEE
T ss_pred hcccccccCCCCcccEEEEecccccc--------chhccHHHHHHHHHhCCCCcEEE
Confidence 77541 00123799999984 2211 11233567888889999999875
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.2e-07 Score=85.21 Aligned_cols=127 Identities=19% Similarity=0.219 Sum_probs=83.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCC---------CcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESS---------AGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p---------~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
..++.+|+|.+||+|.+...+.+++....+ ...++|+|+++.+...|+-|+--++ .....+..++.-
T Consensus 215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg----~~~~~I~~~dtL 290 (530)
T 3ufb_A 215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG----LEYPRIDPENSL 290 (530)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT----CSCCEEECSCTT
T ss_pred cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC----Cccccccccccc
Confidence 456789999999999999888776532111 1369999999999999999987776 333344444432
Q ss_pred hhh-hcCCCCCcEEEEEEeCCCCCCCCCceee-------chhhHHHHHHHHHhccc-------CCcEEEEEEecC
Q 041272 163 RME-EIVPKSTAVRLVAFNLGYLPGGDKSVIT-------TSETTKMALEAAERILI-------PGGLISMVVYVG 222 (267)
Q Consensus 163 ~l~-~~~~~~~~~d~ii~~~~~lp~~d~~~~~-------~~~~~~~~l~~~~~~Lk-------pgG~l~i~~~~~ 222 (267)
... ....+...||+|++|+||-...+..... .......++..+.+.|| |||++.++.+.+
T Consensus 291 ~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g 365 (530)
T 3ufb_A 291 RFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG 365 (530)
T ss_dssp CSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred cCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence 111 1111234699999999883222211110 11223457777888776 799999998754
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=7.3e-07 Score=78.74 Aligned_cols=122 Identities=14% Similarity=0.103 Sum_probs=83.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc----cccccceEEEecChhhhhh-cC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS----KAEKGLVKLFNMCHSRMEE-IV 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~----~~~~~~v~~~~~~~~~l~~-~~ 168 (267)
+..+||-||-|.|..+..+.++ + ..+|+.||+++..++.|++.+..... +....+++++.+|.....+ ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~----~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~ 279 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-K----PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA 279 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-C----CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhc-C----CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhh
Confidence 4579999999999999999875 2 37899999999999999998643211 0113568888877765443 22
Q ss_pred CCCCcEEEEEEeCCCCCCC-CCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGG-DKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~-d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.....||+|+.|+..-+.. +..-.......+++++.+.+.|+|||+++....
T Consensus 280 ~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 280 KEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp HHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 2234799999996432211 100011122347889999999999999976543
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-07 Score=77.39 Aligned_cols=112 Identities=16% Similarity=0.076 Sum_probs=66.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh--ccccccccceEEEec-Chhhhhhc
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK--TTSKAEKGLVKLFNM-CHSRMEEI 167 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~--~~~~~~~~~v~~~~~-~~~~l~~~ 167 (267)
.++++++|||+||++|.++..+++..+. +.|.|.++.... . ..-+.. .+ ..-+.|.++ |..++
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~v----g~V~G~vig~D~-~--~~P~~~~~~G----v~~i~~~~G~Df~~~--- 135 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNV----QEVRGYTKGGPG-H--EEPMLMQSYG----WNIVTMKSGVDVFYK--- 135 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTE----EEEEEECCCSTT-S--CCCCCCCSTT----GGGEEEECSCCGGGS---
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCC----CCceeEEEcccc-c--cCCCcccCCC----ceEEEeeccCCccCC---
Confidence 6889999999999999999999987321 233444433221 0 000000 01 112344444 44332
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCc-EEEEEEec
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG-LISMVVYV 221 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG-~l~i~~~~ 221 (267)
+..++|+|++|+..- .....+++ .....+++-+.++|+||| .|++-++.
T Consensus 136 --~~~~~DvVLSDMAPn-SG~~~vD~--~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 136 --PSEISDTLLCDIGES-SPSAEIEE--QRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp --CCCCCSEEEECCCCC-CSCHHHHH--HHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred --CCCCCCEEEeCCCCC-CCccHHHH--HHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 133699999998653 33222222 111227777889999999 99888884
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.6e-07 Score=75.70 Aligned_cols=131 Identities=17% Similarity=0.148 Sum_probs=84.0
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-ChhhhhhcC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHSRMEEIV 168 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~ 168 (267)
..++++++||||||++|.++..++...+. .+|+|+|+-..-.+.= ...+..| ...++|.++ |...+.
T Consensus 74 ~~l~~g~~VvDLGaapGGWSq~~a~~~g~----~~V~avdvG~~ghe~P-~~~~s~g----wn~v~fk~gvDv~~~~--- 141 (267)
T 3p8z_A 74 NMVIPEGRVIDLGCGRGGWSYYCAGLKKV----TEVRGYTKGGPGHEEP-VPMSTYG----WNIVKLMSGKDVFYLP--- 141 (267)
T ss_dssp TSSCCCEEEEEESCTTSHHHHHHHTSTTE----EEEEEECCCSTTSCCC-CCCCCTT----TTSEEEECSCCGGGCC---
T ss_pred cCCCCCCEEEEcCCCCCcHHHHHHHhcCC----CEEEEEecCCCCccCc-chhhhcC----cCceEEEeccceeecC---
Confidence 36789999999999999999999988654 6899999876432100 0011223 467888876 442222
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhC
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l 240 (267)
+ .++|.+++|++. ..+. -.........+|+-+.+.|++ |-+++-++ .+..++..+.++.+...+
T Consensus 142 ~--~~~DtllcDIge-Ss~~--~~vE~~RtlrvLela~~wL~~-~~fc~KVl--~py~p~v~e~l~~lq~~f 205 (267)
T 3p8z_A 142 P--EKCDTLLCDIGE-SSPS--PTVEESRTIRVLKMVEPWLKN-NQFCIKVL--NPYMPTVIEHLERLQRKH 205 (267)
T ss_dssp C--CCCSEEEECCCC-CCSC--HHHHHHHHHHHHHHHGGGCSS-CEEEEEES--CCCSHHHHHHHHHHHHHH
T ss_pred C--ccccEEEEecCC-CCCC--hhhhhhHHHHHHHHHHHhccc-CCEEEEEc--cCCChhHHHHHHHHHHHh
Confidence 2 469999999876 2221 111223334578888899999 77877666 343444445555555443
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-07 Score=78.64 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=79.3
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
..+.++... ..++++.+||||||++|.++..+++..+ ...|+|+|+...+....... ...+ ..-+.+.
T Consensus 68 ~KL~ei~ek---~l~~~g~~vlDLGaaPGgWsqva~~~~g----v~sV~Gvdlg~~~~~~P~~~-~~~~----~~iv~~~ 135 (300)
T 3eld_A 68 AKIRWLHER---GYLRITGRVLDLGCGRGGWSYYAAAQKE----VMSVKGYTLGIEGHEKPIHM-QTLG----WNIVKFK 135 (300)
T ss_dssp HHHHHHHHH---TSCCCCEEEEEETCTTCHHHHHHHTSTT----EEEEEEECCCCTTSCCCCCC-CBTT----GGGEEEE
T ss_pred HHHHHHHHh---CCCCCCCEEEEcCCCCCHHHHHHHHhcC----CceeeeEEeccccccccccc-cccC----CceEEee
Confidence 344444433 4567899999999999999999998754 36899999976431110000 0001 1112222
Q ss_pred ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEecCCCCChhhHHHHHHH
Q 041272 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVYVGHPGGREELEAVEAF 236 (267)
Q Consensus 158 ~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~~~~~~~~~~~~~~~~ 236 (267)
.+ .++..+ ....+|+|++|+..- .....+++ ......++-+.++|+|| |.|++-.+. +.+......+..+
T Consensus 136 ~~--~di~~l--~~~~~DlVlsD~APn-sG~~~~D~--~rs~~LL~~A~~~LkpG~G~FV~KvF~--~yG~~~~~ll~~l 206 (300)
T 3eld_A 136 DK--SNVFTM--PTEPSDTLLCDIGES-SSNPLVER--DRTMKVLENFERWKHVNTENFCVKVLA--PYHPDVIEKLERL 206 (300)
T ss_dssp CS--CCTTTS--CCCCCSEEEECCCCC-CSSHHHHH--HHHHHHHHHHHHHCCTTCCEEEEEESS--TTSHHHHHHHHHH
T ss_pred cC--ceeeec--CCCCcCEEeecCcCC-CCCHHHHH--HHHHHHHHHHHHHhcCCCCcEEEEecc--ccCccHHHHHHHH
Confidence 11 122222 234799999996432 22111111 12234478888999999 999998883 2233333444444
Q ss_pred HHh
Q 041272 237 ARS 239 (267)
Q Consensus 237 ~~~ 239 (267)
...
T Consensus 207 k~~ 209 (300)
T 3eld_A 207 QLR 209 (300)
T ss_dssp HHH
T ss_pred HHh
Confidence 333
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.2e-07 Score=75.08 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=81.4
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-Chhhhhhc
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHSRMEEI 167 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~ 167 (267)
+..++++++||||||++|.++..++...+. .+|+|+|+-..--+.= ...+..+ ...|.+..+ |...+..
T Consensus 89 ~~~l~~~~~VlDLGaapGGwsq~~~~~~gv----~~V~avdvG~~~he~P-~~~~ql~----w~lV~~~~~~Dv~~l~~- 158 (321)
T 3lkz_A 89 RRFLEPVGKVIDLGCGRGGWCYYMATQKRV----QEVRGYTKGGPGHEEP-QLVQSYG----WNIVTMKSGVDVFYRPS- 158 (321)
T ss_dssp TTSCCCCEEEEEETCTTCHHHHHHTTCTTE----EEEEEECCCSTTSCCC-CCCCBTT----GGGEEEECSCCTTSSCC-
T ss_pred hcCCCCCCEEEEeCCCCCcHHHHHHhhcCC----CEEEEEEcCCCCccCc-chhhhcC----CcceEEEeccCHhhCCC-
Confidence 346789999999999999999999987653 6899999976521100 0001111 234677664 3322222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEecCCCCChhhHHHHHHHHHhC
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVYVGHPGGREELEAVEAFARSL 240 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~~~~~~~~~~~~~~~~~~~l 240 (267)
.++|++++|++.... .-.........+|+-+.+.|++| |-+++-++. +...+..+.++.+...+
T Consensus 159 ----~~~D~ivcDigeSs~---~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~--pY~~~v~e~l~~lq~~f 223 (321)
T 3lkz_A 159 ----ECCDTLLCDIGESSS---SAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC--PYMPKVIEKMELLQRRY 223 (321)
T ss_dssp ----CCCSEEEECCCCCCS---CHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC--TTSHHHHHHHHHHHHHH
T ss_pred ----CCCCEEEEECccCCC---ChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC--CCChHHHHHHHHHHHHh
Confidence 469999999764111 11112233345788888999999 888887763 32333345555555443
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.6e-06 Score=74.04 Aligned_cols=122 Identities=11% Similarity=0.066 Sum_probs=76.1
Q ss_pred CCEEEEecCCCChHHHHHHHh-------------cCCCCCCcEEEEEeCC-----------hHHHHHHHHHHhhcccccc
Q 041272 95 GDTVVDATCGNGYDTLMMLKM-------------VADESSAGCVYGLDIQ-----------SEALKSTSSLLDKTTSKAE 150 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~-------------~~~~~p~~~v~giD~s-----------~~~i~~a~~~~~~~~~~~~ 150 (267)
..+|+|+||++|..|+.+... .+.+.|..+|+.-|+- +.+.+.+++. .+ .
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g---~ 126 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NG---R 126 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TC---C
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---cc---C
Confidence 468999999999999888776 2212356789999988 4444433221 11 0
Q ss_pred ccceEEEecChhhhhhcCCCCCcEEEEEEeC--CCCCCCCCcee-------------e---ch------------hhHHH
Q 041272 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNL--GYLPGGDKSVI-------------T---TS------------ETTKM 200 (267)
Q Consensus 151 ~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~--~~lp~~d~~~~-------------~---~~------------~~~~~ 200 (267)
..+.-|+.+..+.+..-+.++.++|+++++. +++......+. . .+ .+...
T Consensus 127 ~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~ 206 (384)
T 2efj_A 127 KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT 206 (384)
T ss_dssp CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence 1234566666666666566677999999885 44433221111 0 01 12234
Q ss_pred HHHHHHhcccCCcEEEEEEecC
Q 041272 201 ALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 201 ~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+|+...+.|+|||+++++....
T Consensus 207 FL~~Ra~eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 207 FLRIHSEELISRGRMLLTFICK 228 (384)
T ss_dssp HHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHhccCCeEEEEEecC
Confidence 5778899999999999887743
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.35 E-value=9.4e-07 Score=76.09 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=49.8
Q ss_pred HHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc
Q 041272 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT 145 (267)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~ 145 (267)
...+...++...-.+++.|||++||+|..+..+++. +.+++|+|+++++++.|+++++..
T Consensus 221 p~~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~------g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 221 PLELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARW------GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CHHHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 344555555544568999999999999999998876 579999999999999999999764
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.8e-06 Score=73.78 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=77.3
Q ss_pred CCEEEEecCCCChHHHHHHHhc-----------CCCCCCcEEEEEeCChHHHHHHHHHHhhcccc--------ccccceE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMV-----------ADESSAGCVYGLDIQSEALKSTSSLLDKTTSK--------AEKGLVK 155 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~-----------~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~--------~~~~~v~ 155 (267)
..+|+|+|||+|..|+.++..+ +.+-|..+|+.-|+-.......=+.+.....+ ....+.-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4689999999999998873321 11124688999998887765444444321100 0001123
Q ss_pred EEecChhhhhhcCCCCCcEEEEEEeC--CCCCCCCCcee------------e----ch-----------hhHHHHHHHHH
Q 041272 156 LFNMCHSRMEEIVPKSTAVRLVAFNL--GYLPGGDKSVI------------T----TS-----------ETTKMALEAAE 206 (267)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~d~ii~~~--~~lp~~d~~~~------------~----~~-----------~~~~~~l~~~~ 206 (267)
|+.+..+....-+.++.++|+++++. +++......+. + .+ .+...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445567999999885 55543322211 0 01 23455788889
Q ss_pred hcccCCcEEEEEEecC
Q 041272 207 RILIPGGLISMVVYVG 222 (267)
Q Consensus 207 ~~LkpgG~l~i~~~~~ 222 (267)
+.|+|||+++++....
T Consensus 213 ~eL~pGG~mvl~~~gr 228 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGR 228 (374)
T ss_dssp HHEEEEEEEEEEEEEC
T ss_pred HHhCCCCEEEEEEecC
Confidence 9999999999987743
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=98.10 E-value=6.9e-06 Score=69.26 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=50.2
Q ss_pred HHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc
Q 041272 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146 (267)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~ 146 (267)
...+...++.....+|+.|||..||+|..+..+++. +.+++|+|+++.+++.|+++++.++
T Consensus 198 p~~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~------gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 198 PRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL------GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp CHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 345566666655678999999999999999998876 5799999999999999999998754
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.3e-06 Score=63.67 Aligned_cols=53 Identities=15% Similarity=-0.027 Sum_probs=40.3
Q ss_pred hHHHHhhHHHhhhcCCCCEEEEecCCCC-hHHHHHHHhcCCCCCCcEEEEEeCChHHHH
Q 041272 79 LITIAANGVWKHVVRKGDTVVDATCGNG-YDTLMMLKMVADESSAGCVYGLDIQSEALK 136 (267)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~VLDlGcG~G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~ 136 (267)
.+.+....++.....++.+|||+|||+| ..+..|++.. +..|+++|+++.+++
T Consensus 20 ~m~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~-----g~~V~atDInp~Av~ 73 (153)
T 2k4m_A 20 HMWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHS-----KVDLVLTDIKPSHGG 73 (153)
T ss_dssp HHHHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHS-----CCEEEEECSSCSSTT
T ss_pred hHHHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhC-----CCeEEEEECCccccc
Confidence 3443344444445667789999999999 6999999853 478999999998876
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.97 E-value=9.5e-06 Score=68.76 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=77.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh-hhhcCCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR-MEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~~~~ 172 (267)
.+..+||+.+|||.+++.+.+. +.+++.+|.++..++..++|++. ..+++++..|... +....++..
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~------~d~~vfvE~~~~a~~~L~~Nl~~------~~~~~V~~~D~~~~L~~l~~~~~ 158 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRS------QDRLYLCELHPTEYNFLLKLPHF------NKKVYVNHTDGVSKLNALLPPPE 158 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCT------TSEEEEECCSHHHHHHHTTSCCT------TSCEEEECSCHHHHHHHHCSCTT
T ss_pred cCCCceeEeCCcHHHHHHHcCC------CCeEEEEeCCHHHHHHHHHHhCc------CCcEEEEeCcHHHHHHHhcCCCC
Confidence 3567999999999999998874 46999999999999999999875 3578888888654 454555555
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHh--cccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAER--ILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~ 220 (267)
.||+|+.|++|=-. ....++++.+.+ .+.|+|++++--+
T Consensus 159 ~fdLVfiDPPYe~k---------~~~~~vl~~L~~~~~r~~~Gi~v~WYP 199 (283)
T 2oo3_A 159 KRGLIFIDPSYERK---------EEYKEIPYAIKNAYSKFSTGLYCVWYP 199 (283)
T ss_dssp SCEEEEECCCCCST---------THHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CccEEEECCCCCCC---------cHHHHHHHHHHHhCccCCCeEEEEEEe
Confidence 79999999877211 123344444433 3479999866443
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.7e-05 Score=69.79 Aligned_cols=124 Identities=12% Similarity=0.165 Sum_probs=83.2
Q ss_pred CCEEEEecCCCChHHHHHHHh-----------cCC-CCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 95 GDTVVDATCGNGYDTLMMLKM-----------VAD-ESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~-----------~~~-~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
..+|+|+||++|..|+.+... .+. +.|..+|+.-|+........-+.+..... ..+.-|+.+..+
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~---~~~~~f~~gvpg 128 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND---VDGVCFINGVPG 128 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS---CTTCEEEEEEES
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcc---cCCCEEEEecch
Confidence 358999999999888765544 121 23578999999999999988887754210 013355655555
Q ss_pred hhhhcCCCCCcEEEEEEeC--CCCCCCCCcee-----------------e-----chhhHHHHHHHHHhcccCCcEEEEE
Q 041272 163 RMEEIVPKSTAVRLVAFNL--GYLPGGDKSVI-----------------T-----TSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~--~~lp~~d~~~~-----------------~-----~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.+..-+.++.++|+++++. +++......+. . -..+...+|+.-.+.|+|||+++++
T Consensus 129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 5555555667899999885 55443221110 0 1234567899999999999999988
Q ss_pred Eec
Q 041272 219 VYV 221 (267)
Q Consensus 219 ~~~ 221 (267)
...
T Consensus 209 ~~g 211 (359)
T 1m6e_X 209 ILG 211 (359)
T ss_dssp EEE
T ss_pred Eec
Confidence 763
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00013 Score=61.73 Aligned_cols=107 Identities=8% Similarity=-0.023 Sum_probs=67.7
Q ss_pred cCCCCEEEEecC------CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh
Q 041272 92 VRKGDTVVDATC------GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME 165 (267)
Q Consensus 92 l~~~~~VLDlGc------G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~ 165 (267)
++.|++|||+|+ -+|.+ .+.+. ++ .++.|+++|+.+-.. ... .++++|...+.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~-~p--~g~~VVavDL~~~~s---------------da~-~~IqGD~~~~~ 165 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQW-LP--TGTLLVDSDLNDFVS---------------DAD-STLIGDCATVH 165 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHH-SC--TTCEEEEEESSCCBC---------------SSS-EEEESCGGGEE
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHh-CC--CCcEEEEeeCccccc---------------CCC-eEEEccccccc
Confidence 568999999996 55662 33333 33 035999999987431 112 33776654322
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
. ..++|+|++|+..--.......+ ...-.+.+++-+.+.|+|||.|++-++.+.
T Consensus 166 ~----~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs 221 (344)
T 3r24_A 166 T----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS 221 (344)
T ss_dssp E----SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred c----CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence 2 35799999997431111111112 223457788888999999999999998554
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0003 Score=61.79 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=50.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME 165 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~ 165 (267)
++..|||||.|.|.+|..|++.... .+|++||+++.++...++.. . ..+++++.+|.-++.
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~----~~vvavE~D~~l~~~L~~~~-~------~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCP----RQYSLLEKRSSLYKFLNAKF-E------GSPLQILKRDPYDWS 118 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCC----SEEEEECCCHHHHHHHHHHT-T------TSSCEEECSCTTCHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCC----CEEEEEecCHHHHHHHHHhc-c------CCCEEEEECCccchh
Confidence 3589999999999999999987432 68999999999999888876 2 258999998886553
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00055 Score=57.33 Aligned_cols=135 Identities=16% Similarity=0.069 Sum_probs=84.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHh---cCCCCCCcEEEEEeCChHHH---------------------------HHH---
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKM---VADESSAGCVYGLDIQSEAL---------------------------KST--- 138 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~---~~~~~p~~~v~giD~s~~~i---------------------------~~a--- 138 (267)
+.-.+.|+|+||-.|..+..++.. +.+..+..+|+++|--+.+- +..
T Consensus 67 ~~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~ 146 (257)
T 3tos_A 67 LDVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDA 146 (257)
T ss_dssp TTSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHH
T ss_pred hCCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHH
Confidence 344569999999999999887753 21111357999999322221 111
Q ss_pred HHHHhhccccccccceEEEecChhh-hhhcC--CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 139 SSLLDKTTSKAEKGLVKLFNMCHSR-MEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~--~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
.++.+..+ ....+++++.++..+ +..++ .+...+|++..|. . ........++.+...|+|||++
T Consensus 147 ~~~~~~~g--~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~----------D-~Y~~t~~~le~~~p~l~~GGvI 213 (257)
T 3tos_A 147 HECSDFFG--HVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL----------D-LYEPTKAVLEAIRPYLTKGSIV 213 (257)
T ss_dssp HHTTSTTT--TSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC----------C-CHHHHHHHHHHHGGGEEEEEEE
T ss_pred HhhhhhcC--CCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC----------c-ccchHHHHHHHHHHHhCCCcEE
Confidence 11111222 113789999988874 33332 2234699999983 1 2455678899999999999999
Q ss_pred EEEEecCCCCChhhHHHHHHHHHhC
Q 041272 216 SMVVYVGHPGGREELEAVEAFARSL 240 (267)
Q Consensus 216 ~i~~~~~~~~~~~~~~~~~~~~~~l 240 (267)
++-++ +++.-..+.+++.+++...
T Consensus 214 v~DD~-~~~~w~G~~~A~~ef~~~~ 237 (257)
T 3tos_A 214 AFDEL-DNPKWPGENIAMRKVLGLD 237 (257)
T ss_dssp EESST-TCTTCTHHHHHHHHHTCTT
T ss_pred EEcCC-CCCCChHHHHHHHHHHhhC
Confidence 88765 3332334566666666543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00076 Score=59.78 Aligned_cols=134 Identities=10% Similarity=-0.058 Sum_probs=75.8
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh--c---CCC
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE--I---VPK 170 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~--~---~~~ 170 (267)
.+|+|+.||.|.+++.+.+. | ...|.++|+++.+++..+.|.. +..++++|..++.. + ...
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G----~~~v~avE~d~~a~~t~~~N~~---------~~~~~~~DI~~~~~~~~~~~~~~ 68 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-G----FDVKMAVEIDQHAINTHAINFP---------RSLHVQEDVSLLNAEIIKGFFKN 68 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-T----CEEEEEECSCHHHHHHHHHHCT---------TSEEECCCGGGCCHHHHHHHHCS
T ss_pred CeEEEEccCcCHHHHHHHHC-C----CcEEEEEeCCHHHHHHHHHhCC---------CCceEecChhhcCHHHHHhhccc
Confidence 58999999999999999876 2 2357799999999888887643 34455555554422 1 112
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhh-HHHHH---HHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSET-TKMAL---EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~-~~~~l---~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (267)
...+|+++..++.=+++....- ...+ ....+ -++.+.++|.-.+ ......-........++.+. .+...+|.
T Consensus 69 ~~~~D~i~ggpPCQ~fS~ag~~-~~~d~r~~L~~~~~~~v~~~~P~~~v--~ENV~gl~s~~~~~~~~~i~-~l~~~GY~ 144 (376)
T 3g7u_A 69 DMPIDGIIGGPPCQGFSSIGKG-NPDDSRNQLYMHFYRLVSELQPLFFL--AENVPGIMQEKYSGIRNKAF-NLVSGDYD 144 (376)
T ss_dssp CCCCCEEEECCCCCTTC--------CHHHHHHHHHHHHHHHHHCCSEEE--EEECTTTTCGGGHHHHHHHH-HHHHTTEE
T ss_pred CCCeeEEEecCCCCCcccccCC-CCCCchHHHHHHHHHHHHHhCCCEEE--EecchHhhccCcHHHHHHHH-HHHcCCCc
Confidence 3469999999875444321111 1111 11222 2344556885444 33322222223334444555 55556677
Q ss_pred E
Q 041272 247 C 247 (267)
Q Consensus 247 ~ 247 (267)
+
T Consensus 145 v 145 (376)
T 3g7u_A 145 I 145 (376)
T ss_dssp E
T ss_pred c
Confidence 6
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00042 Score=61.12 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=69.7
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----M 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l 164 (267)
..+++|++||-+|+|. |..+..+|+..+. .+|+++|.+++.++.+++. + .. .++.....+ +
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga----~~Vi~~~~~~~~~~~a~~l----G----a~--~vi~~~~~~~~~~~ 251 (371)
T 1f8f_A 186 LKVTPASSFVTWGAGAVGLSALLAAKVCGA----SIIIAVDIVESRLELAKQL----G----AT--HVINSKTQDPVAAI 251 (371)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHTC----SEEEEEESCHHHHHHHHHH----T----CS--EEEETTTSCHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEECCCHHHHHHHHHc----C----CC--EEecCCccCHHHHH
Confidence 3578899999999987 8888999988752 4799999999998888652 2 11 112211112 2
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+.. .. .+|+++...+. ...++.+.+.|++||++++...
T Consensus 252 ~~~~-~g-g~D~vid~~g~---------------~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 252 KEIT-DG-GVNFALESTGS---------------PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp HHHT-TS-CEEEEEECSCC---------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred HHhc-CC-CCcEEEECCCC---------------HHHHHHHHHHHhcCCEEEEeCC
Confidence 2222 22 69999887432 3678899999999999987644
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00062 Score=59.61 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=52.1
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCCCCcE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPKSTAV 174 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~~~~~ 174 (267)
.+|+|+.||.|.+++.+.+.-.. ...|+++|+++.+++..+.|... ..++.+|..++.. .+. ...+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~---~~~v~~~E~d~~a~~~~~~N~~~---------~~~~~~Di~~~~~~~~~-~~~~ 69 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIP---AQVVAAIDVNTVANEVYKYNFPH---------TQLLAKTIEGITLEEFD-RLSF 69 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCS---EEEEEEECCCHHHHHHHHHHCTT---------SCEECSCGGGCCHHHHH-HHCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCC---ceEEEEEeCCHHHHHHHHHhccc---------cccccCCHHHccHhHcC-cCCc
Confidence 58999999999999999876100 13689999999999999887643 2345555544421 111 1148
Q ss_pred EEEEEeCCCCCCC
Q 041272 175 RLVAFNLGYLPGG 187 (267)
Q Consensus 175 d~ii~~~~~lp~~ 187 (267)
|+++.+++.=+++
T Consensus 70 D~l~~gpPCq~fS 82 (343)
T 1g55_A 70 DMILMSPPCQPFT 82 (343)
T ss_dssp SEEEECCC-----
T ss_pred CEEEEcCCCcchh
Confidence 9999998764443
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00065 Score=59.95 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=71.2
Q ss_pred HHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh
Q 041272 87 VWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME 165 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~ 165 (267)
+....+++|++||-.|+|. |..+..+|+..|. .+|+++|.+++..+.+++. | .. ..+.....++.
T Consensus 175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga----~~Vi~~~~~~~~~~~a~~l----G----a~--~vi~~~~~~~~ 240 (370)
T 4ej6_A 175 VDLSGIKAGSTVAILGGGVIGLLTVQLARLAGA----TTVILSTRQATKRRLAEEV----G----AT--ATVDPSAGDVV 240 (370)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEECSCHHHHHHHHHH----T----CS--EEECTTSSCHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHc----C----CC--EEECCCCcCHH
Confidence 3344678999999999987 8888899988752 4999999999988887762 2 11 12221112221
Q ss_pred hc------CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EI------VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~------~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+. ... ..+|+++-..+. ...++.+.+.|++||++++...
T Consensus 241 ~~i~~~~~~~~-gg~Dvvid~~G~---------------~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 241 EAIAGPVGLVP-GGVDVVIECAGV---------------AETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp HHHHSTTSSST-TCEEEEEECSCC---------------HHHHHHHHHHEEEEEEEEECSC
T ss_pred HHHHhhhhccC-CCCCEEEECCCC---------------HHHHHHHHHHhccCCEEEEEec
Confidence 11 112 269999887432 3678899999999999987543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00053 Score=59.70 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=68.9
Q ss_pred hhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc
Q 041272 89 KHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 167 (267)
...+++|++||-.|+|. |..+..+|+..| ++|+++|.+++..+.+++. + .. ..+.....++.+.
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-----a~Vi~~~~~~~~~~~~~~l----G----a~--~~i~~~~~~~~~~ 225 (340)
T 3s2e_A 161 VTDTRPGQWVVISGIGGLGHVAVQYARAMG-----LRVAAVDIDDAKLNLARRL----G----AE--VAVNARDTDPAAW 225 (340)
T ss_dssp TTTCCTTSEEEEECCSTTHHHHHHHHHHTT-----CEEEEEESCHHHHHHHHHT----T----CS--EEEETTTSCHHHH
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHCC-----CeEEEEeCCHHHHHHHHHc----C----CC--EEEeCCCcCHHHH
Confidence 34578999999999987 899999999864 6999999999998887652 2 11 1122111122111
Q ss_pred CC-CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 VP-KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 ~~-~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. ....+|+++.+.+. ...++.+.+.|++||++++..
T Consensus 226 ~~~~~g~~d~vid~~g~---------------~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 226 LQKEIGGAHGVLVTAVS---------------PKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp HHHHHSSEEEEEESSCC---------------HHHHHHHHHHEEEEEEEEECS
T ss_pred HHHhCCCCCEEEEeCCC---------------HHHHHHHHHHhccCCEEEEeC
Confidence 10 11258888876431 367889999999999997653
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00058 Score=59.90 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=68.3
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC---hhhh-
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC---HSRM- 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~---~~~l- 164 (267)
..+++|++||-+|+|. |..+..+|+..|. .+|+++|.+++..+.+++. + .. .++... ..++
T Consensus 167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga----~~Vi~~~~~~~~~~~a~~l----G----a~--~vi~~~~~~~~~~~ 232 (356)
T 1pl8_A 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGA----AQVVVTDLSATRLSKAKEI----G----AD--LVLQISKESPQEIA 232 (356)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEEESCHHHHHHHHHT----T----CS--EEEECSSCCHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHh----C----CC--EEEcCcccccchHH
Confidence 4578999999999987 8888899988642 4899999999988887652 2 11 122211 1222
Q ss_pred ---hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 ---EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ---~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+... ..+|+++-..+. ...++.+.+.|++||+++....
T Consensus 233 ~~i~~~~~--~g~D~vid~~g~---------------~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 233 RKVEGQLG--CKPEVTIECTGA---------------EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp HHHHHHHT--SCCSEEEECSCC---------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred HHHHHHhC--CCCCEEEECCCC---------------hHHHHHHHHHhcCCCEEEEEec
Confidence 22111 258888877432 3567888999999999977543
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00065 Score=59.46 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=70.0
Q ss_pred HHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh--
Q 041272 87 VWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR-- 163 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~-- 163 (267)
+....+++|++||-+|+|. |..+..+|+..|. .+|+++|.+++.++.+++. + . -.++.....+
T Consensus 159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga----~~Vi~~~~~~~~~~~~~~l----G----a--~~vi~~~~~~~~ 224 (352)
T 3fpc_A 159 AELANIKLGDTVCVIGIGPVGLMSVAGANHLGA----GRIFAVGSRKHCCDIALEY----G----A--TDIINYKNGDIV 224 (352)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTC----SSEEEECCCHHHHHHHHHH----T----C--CEEECGGGSCHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEECCCHHHHHHHHHh----C----C--ceEEcCCCcCHH
Confidence 3344678999999999987 8888899988642 4899999999988888763 2 1 1122211112
Q ss_pred --hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 --MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 --l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.+.. ....+|+++-..+. ...++.+.+.|+|||+++...
T Consensus 225 ~~v~~~t-~g~g~D~v~d~~g~---------------~~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 225 EQILKAT-DGKGVDKVVIAGGD---------------VHTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp HHHHHHT-TTCCEEEEEECSSC---------------TTHHHHHHHHEEEEEEEEECC
T ss_pred HHHHHHc-CCCCCCEEEECCCC---------------hHHHHHHHHHHhcCCEEEEec
Confidence 22222 22369999876432 257888999999999998654
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00065 Score=59.26 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=67.5
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhcC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~ 168 (267)
.+ +|++||-+|+|. |..+..+|+... |+++|+++|.+++..+.+++. + .. .++.... .++....
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~---~Ga~Vi~~~~~~~~~~~~~~l----G----a~--~vi~~~~~~~~~~~~ 233 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALM---KNITIVGISRSKKHRDFALEL----G----AD--YVSEMKDAESLINKL 233 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHC---TTCEEEEECSCHHHHHHHHHH----T----CS--EEECHHHHHHHHHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhc---CCCEEEEEeCCHHHHHHHHHh----C----CC--EEeccccchHHHHHh
Confidence 56 899999999976 788888888761 125899999999988888652 2 11 1121111 1221111
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.....+|+++...+. ...++.+.+.|++||+++....
T Consensus 234 ~~g~g~D~vid~~g~---------------~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 234 TDGLGASIAIDLVGT---------------EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp HTTCCEEEEEESSCC---------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred hcCCCccEEEECCCC---------------hHHHHHHHHHhhcCCEEEEeCC
Confidence 112369999887542 3478889999999999977543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00068 Score=59.85 Aligned_cols=98 Identities=10% Similarity=0.103 Sum_probs=66.8
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..+++|++||-+|+|. |..+..+|+..| ++|+++|.+++.++.+++ .+ .. .++.....+.....
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-----a~Vi~~~~~~~~~~~a~~----lG----a~--~vi~~~~~~~~~~~ 254 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMG-----AHVVAFTTSEAKREAAKA----LG----AD--EVVNSRNADEMAAH 254 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTT-----CEEEEEESSGGGHHHHHH----HT----CS--EEEETTCHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHH----cC----Cc--EEeccccHHHHHHh
Confidence 3578999999999986 888888888764 579999999999888875 22 11 12221112222212
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
. ..+|+++...+. ...++.+.+.|++||+++...
T Consensus 255 ~--~g~Dvvid~~g~---------------~~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 255 L--KSFDFILNTVAA---------------PHNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp T--TCEEEEEECCSS---------------CCCHHHHHTTEEEEEEEEECC
T ss_pred h--cCCCEEEECCCC---------------HHHHHHHHHHhccCCEEEEec
Confidence 1 368999877432 124677889999999987654
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00063 Score=60.60 Aligned_cols=112 Identities=22% Similarity=0.240 Sum_probs=69.5
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-----hh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-----SR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-----~~ 163 (267)
..+++|++||-+|+|. |..+..+|+..+. .+|+++|.+++.++.+++ .+ . +.+.... +.
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga----~~Vi~~~~~~~~~~~a~~----lG-----a--~~i~~~~~~~~~~~ 245 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGA----ACVIVGDQNPERLKLLSD----AG-----F--ETIDLRNSAPLRDQ 245 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHTC----SEEEEEESCHHHHHHHHT----TT-----C--EEEETTSSSCHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHH----cC-----C--cEEcCCCcchHHHH
Confidence 4578999999999987 8899999988742 499999999998888764 23 1 2222111 12
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCC-CceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGD-KSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d-~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.+.. ....+|+++-..+.-.... ....+ ......++.+.+.|++||++++..
T Consensus 246 ~~~~~-~g~g~Dvvid~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 246 IDQIL-GKPEVDCGVDAVGFEAHGLGDEANT--ETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp HHHHH-SSSCEEEEEECSCTTCBCSGGGTTS--BCTTHHHHHHHHHEEEEEEEECCS
T ss_pred HHHHh-CCCCCCEEEECCCCccccccccccc--cccHHHHHHHHHHHhcCCEEEEec
Confidence 22221 1225999988754210000 00000 001246888999999999997654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00063 Score=59.43 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=68.7
Q ss_pred HHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh
Q 041272 87 VWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME 165 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~ 165 (267)
+....+++|++||-+|+|. |..+..+|+..| ++|+++|.+++..+.+++ .| ... ++ .+...+
T Consensus 169 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-----a~Vi~~~~~~~~~~~~~~----lG----a~~--v~-~~~~~~- 231 (348)
T 3two_A 169 LKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMG-----AEVSVFARNEHKKQDALS----MG----VKH--FY-TDPKQC- 231 (348)
T ss_dssp HHHTTCCTTCEEEEESCSHHHHHHHHHHHHTT-----CEEEEECSSSTTHHHHHH----TT----CSE--EE-SSGGGC-
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHCC-----CeEEEEeCCHHHHHHHHh----cC----CCe--ec-CCHHHH-
Confidence 3344678999999999987 888889998864 699999999998888865 22 111 12 222222
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.. .+|+++-..+. ...++.+.+.|+|||++++...
T Consensus 232 ---~~--~~D~vid~~g~---------------~~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 232 ---KE--ELDFIISTIPT---------------HYDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp ---CS--CEEEEEECCCS---------------CCCHHHHHTTEEEEEEEEECCC
T ss_pred ---hc--CCCEEEECCCc---------------HHHHHHHHHHHhcCCEEEEECC
Confidence 11 68999877432 1357888999999999987644
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00054 Score=59.46 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=51.1
Q ss_pred hHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc
Q 041272 79 LITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146 (267)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~ 146 (267)
....+...++...-.+|+.|||..||+|..+....+. +.+.+|+|+++..++.|+++++..+
T Consensus 237 kp~~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~------gr~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 237 FPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERE------SRKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp CCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 3445666666656678999999999999988887765 5799999999999999999987754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0013 Score=57.54 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=67.8
Q ss_pred hhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----hh
Q 041272 89 KHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----HS 162 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~~ 162 (267)
...+++|++||-+|+|. |..+..+|+..| ++|+++|.+++..+.+++ .+ .. ..+... ..
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-----a~Vi~~~~~~~~~~~~~~----lG----a~--~~~~~~~~~~~~~ 227 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYG-----AFVVCTARSPRRLEVAKN----CG----AD--VTLVVDPAKEEES 227 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTT-----CEEEEEESCHHHHHHHHH----TT----CS--EEEECCTTTSCHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-----CEEEEEcCCHHHHHHHHH----hC----CC--EEEcCcccccHHH
Confidence 34578999999999876 788888888764 579999999998888764 22 11 112111 11
Q ss_pred hhhhcCC--CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 163 RMEEIVP--KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~--~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+.+... ....+|+++.+.+. ...++.+.+.|++||+++....
T Consensus 228 ~i~~~~~~~~g~g~D~vid~~g~---------------~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 228 SIIERIRSAIGDLPNVTIDCSGN---------------EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp HHHHHHHHHSSSCCSEEEECSCC---------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred HHHHHhccccCCCCCEEEECCCC---------------HHHHHHHHHHHhcCCEEEEEec
Confidence 2222111 01258888877432 3468888999999999976543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0037 Score=54.28 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=69.6
Q ss_pred HHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh---
Q 041272 87 VWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS--- 162 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~--- 162 (267)
.....++++++||=.|+|. |..+..+|+..+. ..++++|.+++.++.+++. | -...+.....
T Consensus 153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~----~~vi~~~~~~~k~~~a~~l----G------a~~~i~~~~~~~~ 218 (346)
T 4a2c_A 153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGA----KSVTAIDISSEKLALAKSF----G------AMQTFNSSEMSAP 218 (346)
T ss_dssp HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTC----SEEEEEESCHHHHHHHHHT----T------CSEEEETTTSCHH
T ss_pred HHHhccCCCCEEEEECCCCcchHHHHHHHHcCC----cEEEEEechHHHHHHHHHc----C------CeEEEeCCCCCHH
Confidence 3344578999999999987 7778888888753 5789999999988888762 2 1122221111
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..........+|+++...+. ...++.+.+.|++||.+++...
T Consensus 219 ~~~~~~~~~~g~d~v~d~~G~---------------~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 219 QMQSVLRELRFNQLILETAGV---------------PQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp HHHHHHGGGCSSEEEEECSCS---------------HHHHHHHHHHCCTTCEEEECCC
T ss_pred HHHHhhcccCCcccccccccc---------------cchhhhhhheecCCeEEEEEec
Confidence 121122222346777766332 4678889999999999987543
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0013 Score=57.27 Aligned_cols=100 Identities=19% Similarity=0.271 Sum_probs=69.9
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh---hhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH---SRMEE 166 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~---~~l~~ 166 (267)
.++++++||-+|+|. |..+..+|+..+ +.+|+++|.+++..+.+++. | .. .++.... +.+.+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g----~~~Vi~~~~~~~~~~~~~~l----G----a~--~~i~~~~~~~~~v~~ 233 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS----AARVIAVDLDDDRLALAREV----G----AD--AAVKSGAGAADAIRE 233 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC----CCEEEEEESCHHHHHHHHHT----T----CS--EEEECSTTHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC----CCEEEEEcCCHHHHHHHHHc----C----CC--EEEcCCCcHHHHHHH
Confidence 578999999999987 888899998874 37999999999998888652 2 11 1121111 11222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.. ....+|+++-..+. ...++.+.+.|++||++++...
T Consensus 234 ~t-~g~g~d~v~d~~G~---------------~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 234 LT-GGQGATAVFDFVGA---------------QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp HH-GGGCEEEEEESSCC---------------HHHHHHHHHHEEEEEEEEECSC
T ss_pred Hh-CCCCCeEEEECCCC---------------HHHHHHHHHHHhcCCEEEEECC
Confidence 11 12268999887543 3588999999999999987643
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0015 Score=57.86 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=68.8
Q ss_pred hh-cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC---hhhh
Q 041272 90 HV-VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC---HSRM 164 (267)
Q Consensus 90 ~~-l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~---~~~l 164 (267)
.. +++|++||-+|+|. |..+..+|+..|. .+|+++|.+++.++.+++ .+ .. .++... ..++
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga----~~Vi~~~~~~~~~~~~~~----lG----a~--~vi~~~~~~~~~~ 255 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGA----ENVIVIAGSPNRLKLAEE----IG----AD--LTLNRRETSVEER 255 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTB----SEEEEEESCHHHHHHHHH----TT----CS--EEEETTTSCHHHH
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcCC----ceEEEEcCCHHHHHHHHH----cC----Cc--EEEeccccCcchH
Confidence 35 77899999999876 8888888888641 599999999998888764 22 11 122222 2222
Q ss_pred ----hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 ----EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ----~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+.. ....+|+++-+.+. ...++.+.+.|++||+++....
T Consensus 256 ~~~v~~~~-~g~g~Dvvid~~g~---------------~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 256 RKAIMDIT-HGRGADFILEATGD---------------SRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp HHHHHHHT-TTSCEEEEEECSSC---------------TTHHHHHHHHEEEEEEEEECCC
T ss_pred HHHHHHHh-CCCCCcEEEECCCC---------------HHHHHHHHHHHhcCCEEEEEec
Confidence 2222 22359999887532 2467888999999999976544
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0016 Score=57.12 Aligned_cols=104 Identities=19% Similarity=0.143 Sum_probs=71.1
Q ss_pred hhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe--cChhhhh
Q 041272 89 KHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN--MCHSRME 165 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~--~~~~~l~ 165 (267)
...+++|++||-+|+|. |..+..+|+..|. .+|+++|.+++..+.+++. .. .-+.... .+..++.
T Consensus 174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga----~~Vi~~~~~~~~~~~a~~l-~~-------~~~~~~~~~~~~~~~~ 241 (363)
T 3m6i_A 174 RAGVRLGDPVLICGAGPIGLITMLCAKAAGA----CPLVITDIDEGRLKFAKEI-CP-------EVVTHKVERLSAEESA 241 (363)
T ss_dssp HHTCCTTCCEEEECCSHHHHHHHHHHHHTTC----CSEEEEESCHHHHHHHHHH-CT-------TCEEEECCSCCHHHHH
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHh-ch-------hcccccccccchHHHH
Confidence 34578999999999987 8888999998752 3499999999999999875 21 1112111 1112222
Q ss_pred ----hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 ----EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ----~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.. ....+|+++-..+. ...++.+.+.|++||++++...
T Consensus 242 ~~v~~~t-~g~g~Dvvid~~g~---------------~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 242 KKIVESF-GGIEPAVALECTGV---------------ESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp HHHHHHT-SSCCCSEEEECSCC---------------HHHHHHHHHHSCTTCEEEECCC
T ss_pred HHHHHHh-CCCCCCEEEECCCC---------------hHHHHHHHHHhcCCCEEEEEcc
Confidence 222 12358888877432 3578899999999999987644
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0062 Score=52.86 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=53.5
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
+.+|+|+.||.|.+++.+.+. | ...|.++|+++.+++..+.|..... .+|..++..... ..+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G----~~~v~~~e~d~~a~~t~~~N~~~~~-----------~~Di~~~~~~~~--~~~ 72 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-G----AECVYSNEWDKYAQEVYEMNFGEKP-----------EGDITQVNEKTI--PDH 72 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-T----CEEEEEECCCHHHHHHHHHHHSCCC-----------BSCGGGSCGGGS--CCC
T ss_pred CCcEEEECCCcCHHHHHHHHC-C----CeEEEEEeCCHHHHHHHHHHcCCCC-----------cCCHHHcCHhhC--CCC
Confidence 469999999999999998876 2 2468899999999999888864311 334433322111 148
Q ss_pred EEEEEeCCCCCCC
Q 041272 175 RLVAFNLGYLPGG 187 (267)
Q Consensus 175 d~ii~~~~~lp~~ 187 (267)
|+++.+++.=+++
T Consensus 73 D~l~~gpPCQ~fS 85 (327)
T 2c7p_A 73 DILCAGFPCQAFS 85 (327)
T ss_dssp SEEEEECCCTTTC
T ss_pred CEEEECCCCCCcc
Confidence 9999998875554
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00096 Score=57.79 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=50.4
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCCh---HHHHHHHHHHhhcc
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS---EALKSTSSLLDKTT 146 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~---~~i~~a~~~~~~~~ 146 (267)
.....+...++...-.+|+.|||..||+|..+....+. +.+.+|+|+++ ..++.|++++++.+
T Consensus 226 ~kp~~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~------~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 226 QKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE------GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp CCCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH------TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHc------CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 44566677777666778999999999999999888876 57999999999 99999999987644
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=59.38 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=49.0
Q ss_pred cCCCCEEEEecCCCChHHHHHH-HhcCCCCCCcEEEEEeCChHHHHHHHHHHhh--ccccccc-cceEEEe
Q 041272 92 VRKGDTVVDATCGNGYDTLMML-KMVADESSAGCVYGLDIQSEALKSTSSLLDK--TTSKAEK-GLVKLFN 158 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la-~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~--~~~~~~~-~~v~~~~ 158 (267)
++++..|+|+|++.|..+..++ +..+. .++|+++|.++...+..++|++. ++ .. .++++++
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~---~~~V~afEP~p~~~~~L~~n~~~~~N~---~~~~~v~~~~ 288 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGK---FERVWMIEPDRINLQTLQNVLRRYTDT---NFASRITVHG 288 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSC---CSEEEEECCCHHHHHHHHHHHHHTTTS---TTGGGEEEEC
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCC---CCEEEEEcCCHHHHHHHHHHHHhhhcc---CCCCCEEEEE
Confidence 4688999999999999999988 45432 37999999999999999999987 32 13 5666654
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0011 Score=52.81 Aligned_cols=98 Identities=18% Similarity=0.205 Sum_probs=63.4
Q ss_pred hcCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhh
Q 041272 91 VVRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRM 164 (267)
Q Consensus 91 ~l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l 164 (267)
.++++++||..|+ |.|..+..+++.. +.+|+++|.+++..+.+++ .+ ... .+.... ..+
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-----G~~V~~~~~~~~~~~~~~~----~g----~~~--~~d~~~~~~~~~~ 99 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMI-----GARIYTTAGSDAKREMLSR----LG----VEY--VGDSRSVDFADEI 99 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHT----TC----CSE--EEETTCSTHHHHH
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHH----cC----CCE--EeeCCcHHHHHHH
Confidence 5778999999995 3366667777665 3689999999988776654 22 111 111111 122
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+... ...+|+++.+.+. ..++.+.+.|+|||+++....
T Consensus 100 ~~~~~-~~~~D~vi~~~g~----------------~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 100 LELTD-GYGVDVVLNSLAG----------------EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp HHHTT-TCCEEEEEECCCT----------------HHHHHHHHTEEEEEEEEECSC
T ss_pred HHHhC-CCCCeEEEECCch----------------HHHHHHHHHhccCCEEEEEcC
Confidence 22221 2359999987431 467889999999999977543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0017 Score=56.54 Aligned_cols=98 Identities=21% Similarity=0.165 Sum_probs=66.9
Q ss_pred hhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----
Q 041272 89 KHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR---- 163 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~---- 163 (267)
...++++++||-+|+|. |..+..+|+.. +.+|+++|.+++.++.+++ .+ .. .++.....+
T Consensus 159 ~~~~~~g~~VlV~GaG~vG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~----lG----a~--~~~d~~~~~~~~~ 223 (339)
T 1rjw_A 159 VTGAKPGEWVAIYGIGGLGHVAVQYAKAM-----GLNVVAVDIGDEKLELAKE----LG----AD--LVVNPLKEDAAKF 223 (339)
T ss_dssp HHTCCTTCEEEEECCSTTHHHHHHHHHHT-----TCEEEEECSCHHHHHHHHH----TT----CS--EEECTTTSCHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHH----CC----CC--EEecCCCccHHHH
Confidence 34578999999999975 77888888876 3699999999998888764 22 11 112111111
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.+.. ..+|+++.+.+. ...++.+.+.|++||+++...
T Consensus 224 ~~~~~---~~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 224 MKEKV---GGVHAAVVTAVS---------------KPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp HHHHH---SSEEEEEESSCC---------------HHHHHHHHHHEEEEEEEEECC
T ss_pred HHHHh---CCCCEEEECCCC---------------HHHHHHHHHHhhcCCEEEEec
Confidence 22221 258999887532 357888899999999997653
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0027 Score=56.07 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=69.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC--hh----
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC--HS---- 162 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~--~~---- 162 (267)
..+++|++||-+|+|. |..+..+|+..|. .+|+++|.+++.++.+++. | .. .++... ..
T Consensus 189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga----~~Vi~~~~~~~~~~~a~~l----G----a~--~vi~~~~~~~~~~~ 254 (378)
T 3uko_A 189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAGA----SRIIGIDIDSKKYETAKKF----G----VN--EFVNPKDHDKPIQE 254 (378)
T ss_dssp TCCCTTCCEEEECCSHHHHHHHHHHHHHTC----SCEEEECSCTTHHHHHHTT----T----CC--EEECGGGCSSCHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHHc----C----Cc--EEEccccCchhHHH
Confidence 3577899999999986 8888999998752 4899999999998887652 2 11 122111 11
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
.+.+... . .+|+++-..+. ...++.+.+.|++| |++++...
T Consensus 255 ~i~~~~~-g-g~D~vid~~g~---------------~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 255 VIVDLTD-G-GVDYSFECIGN---------------VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp HHHHHTT-S-CBSEEEECSCC---------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHHhcC-C-CCCEEEECCCC---------------HHHHHHHHHHhhccCCEEEEEcc
Confidence 1222222 2 68888877432 36789999999997 99987543
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0036 Score=54.37 Aligned_cols=104 Identities=20% Similarity=0.171 Sum_probs=67.2
Q ss_pred hhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhh
Q 041272 89 KHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEE 166 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~ 166 (267)
...+++|++||=+|+|+ |.++..+++..+ +.+|+++|.+++.++.+++.-.. .-+.....+. +.+.+
T Consensus 158 ~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~----g~~Vi~~~~~~~r~~~~~~~Ga~-------~~i~~~~~~~~~~v~~ 226 (348)
T 4eez_A 158 VSGVKPGDWQVIFGAGGLGNLAIQYAKNVF----GAKVIAVDINQDKLNLAKKIGAD-------VTINSGDVNPVDEIKK 226 (348)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTS----CCEEEEEESCHHHHHHHHHTTCS-------EEEEC-CCCHHHHHHH
T ss_pred ccCCCCCCEEEEEcCCCccHHHHHHHHHhC----CCEEEEEECcHHHhhhhhhcCCe-------EEEeCCCCCHHHHhhh
Confidence 34578999999999987 566677776654 47999999999988777653211 1111111111 12222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. ....+|.++.+.+. ...+..+.+.|+++|.+++..
T Consensus 227 ~t-~g~g~d~~~~~~~~---------------~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 227 IT-GGLGVQSAIVCAVA---------------RIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp HT-TSSCEEEEEECCSC---------------HHHHHHHHHTEEEEEEEEECC
T ss_pred hc-CCCCceEEEEeccC---------------cchhheeheeecCCceEEEEe
Confidence 22 23357877776322 467889999999999997654
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.003 Score=56.15 Aligned_cols=114 Identities=15% Similarity=0.183 Sum_probs=71.3
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-----hh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-----SR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-----~~ 163 (267)
..+++|++||-+|+|. |..+..+|+..|. .+|+++|.+++.++.+++ .| . +.+.... ..
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga----~~Vi~~~~~~~~~~~a~~----lG-----a--~~i~~~~~~~~~~~ 245 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGA----AVVIVGDLNPARLAHAKA----QG-----F--EIADLSLDTPLHEQ 245 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEEESCHHHHHHHHH----TT-----C--EEEETTSSSCHHHH
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCC----CeEEEEcCCHHHHHHHHH----cC-----C--cEEccCCcchHHHH
Confidence 4578999999999987 8889999998752 489999999999888865 23 1 1222111 12
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCC-CCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGG-DKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~-d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.+.. ....+|+++-..+.-... .....+ .+.+...++.+.+.|++||++++...
T Consensus 246 v~~~t-~g~g~Dvvid~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 246 IAALL-GEPEVDCAVDAVGFEARGHGHEGAK-HEAPATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp HHHHH-SSSCEEEEEECCCTTCBCSSTTGGG-SBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred HHHHh-CCCCCCEEEECCCCccccccccccc-ccchHHHHHHHHHHHhcCCEEEEecc
Confidence 22221 123599998875431100 000001 11223578899999999999976543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0015 Score=57.43 Aligned_cols=99 Identities=19% Similarity=0.145 Sum_probs=68.2
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh----
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM---- 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l---- 164 (267)
..+++|++||-+|+|. |..+..+|+..| ++|+++|.+++.++.+++. | .. .++..+..++
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~G-----a~Vi~~~~~~~~~~~~~~l----G----a~--~vi~~~~~~~~~~v 249 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKATG-----AEVIVTSSSREKLDRAFAL----G----AD--HGINRLEEDWVERV 249 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHTT-----CEEEEEESCHHHHHHHHHH----T----CS--EEEETTTSCHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-----CEEEEEecCchhHHHHHHc----C----CC--EEEcCCcccHHHHH
Confidence 4577999999999887 888888888763 6999999999988887652 2 11 1222111222
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+.. .+..+|+++-+.+- ..++.+.+.|++||++++...
T Consensus 250 ~~~~-~g~g~D~vid~~g~----------------~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 250 YALT-GDRGADHILEIAGG----------------AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp HHHH-TTCCEEEEEEETTS----------------SCHHHHHHHEEEEEEEEEECC
T ss_pred HHHh-CCCCceEEEECCCh----------------HHHHHHHHHhhcCCEEEEEec
Confidence 2222 22369999888541 356788899999999987654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0043 Score=53.16 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=62.3
Q ss_pred CEEEEecCCCChHHHHHHH---hcCCCCCCc--EEEEEeCCh--------HHHHHHHHHHhhccccccccc--eEEEecC
Q 041272 96 DTVVDATCGNGYDTLMMLK---MVADESSAG--CVYGLDIQS--------EALKSTSSLLDKTTSKAEKGL--VKLFNMC 160 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~---~~~~~~p~~--~v~giD~s~--------~~i~~a~~~~~~~~~~~~~~~--v~~~~~~ 160 (267)
-+|||+|-|+|...+...+ ..+ |.. +++++|..+ +......+.+..........+ +++..+|
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~---~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVN---PKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHC---TTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhC---CCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 4899999999987644332 222 233 567777532 111221222211110011233 3566777
Q ss_pred hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 161 HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 161 ~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+....+. +..+|+++.|. +-|.....+. ..++++.++++++|||.+ ++|
T Consensus 175 a~~~l~~l~-~~~~Da~flDg-FsP~kNPeLW-----s~e~f~~l~~~~~pgg~l--aTY 225 (308)
T 3vyw_A 175 ARKRIKEVE-NFKADAVFHDA-FSPYKNPELW-----TLDFLSLIKERIDEKGYW--VSY 225 (308)
T ss_dssp HHHHGGGCC-SCCEEEEEECC-SCTTTSGGGG-----SHHHHHHHHTTEEEEEEE--EES
T ss_pred HHHHHhhhc-ccceeEEEeCC-CCcccCcccC-----CHHHHHHHHHHhCCCcEE--EEE
Confidence 765444332 34799999993 2222211111 168999999999999998 455
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0047 Score=54.36 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=68.3
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----h-h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----H-S 162 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~-~ 162 (267)
..+++|++||-+|+|. |..+..+|+..+. .+|+++|.+++..+.+++ .+ .. .++... . +
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga----~~Vi~~~~~~~~~~~a~~----lG----a~--~vi~~~~~~~~~~~ 252 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGA----SRIIGVGTHKDKFPKAIE----LG----AT--ECLNPKDYDKPIYE 252 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTC----SEEEEECSCGGGHHHHHH----TT----CS--EEECGGGCSSCHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEECCCHHHHHHHHH----cC----Cc--EEEecccccchHHH
Confidence 3577899999999987 8888899988742 489999999998888865 22 11 112111 1 1
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
.+.+... . .+|+++-..+. ...++.+.+.|++| |++++...
T Consensus 253 ~i~~~t~-g-g~Dvvid~~g~---------------~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 253 VICEKTN-G-GVDYAVECAGR---------------IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp HHHHHTT-S-CBSEEEECSCC---------------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred HHHHHhC-C-CCCEEEECCCC---------------HHHHHHHHHHHhcCCCEEEEEcc
Confidence 1222222 2 68888877432 36788999999999 99976543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.003 Score=55.59 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=67.4
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----h-h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----H-S 162 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~-~ 162 (267)
..+++|++||-+|+|. |..+..+|+..+. .+|+++|.+++.++.+++. + .. .++... . +
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga----~~Vi~~~~~~~~~~~~~~l----G----a~--~vi~~~~~~~~~~~ 253 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGA----KRIIAVDLNPDKFEKAKVF----G----AT--DFVNPNDHSEPISQ 253 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEECSCGGGHHHHHHT----T----CC--EEECGGGCSSCHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHHh----C----Cc--eEEeccccchhHHH
Confidence 3577899999999876 8888888888642 3899999999998888642 2 11 112111 1 1
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
.+.+... ..+|+++-..+. ...++.+.+.|++| |++++...
T Consensus 254 ~~~~~~~--~g~D~vid~~g~---------------~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 254 VLSKMTN--GGVDFSLECVGN---------------VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp HHHHHHT--SCBSEEEECSCC---------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHHHhC--CCCCEEEECCCC---------------HHHHHHHHHHhhcCCcEEEEEcC
Confidence 1122211 258888877432 35788999999999 99976543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.003 Score=55.65 Aligned_cols=99 Identities=20% Similarity=0.223 Sum_probs=66.9
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----h-h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----H-S 162 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~-~ 162 (267)
..+++|++||-+|+|. |..+..+|+..+. .+|+++|.+++..+.+++. + .. .++... . +
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga----~~Vi~~~~~~~~~~~a~~l----G----a~--~vi~~~~~~~~~~~ 256 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGA----SRIIAIDINGEKFPKAKAL----G----AT--DCLNPRELDKPVQD 256 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEECSCGGGHHHHHHT----T----CS--EEECGGGCSSCHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHHh----C----Cc--EEEccccccchHHH
Confidence 3567899999999886 8888889988642 4899999999988887642 2 11 112111 1 1
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEE
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVV 219 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 219 (267)
.+.+... . .+|+++-..+. ...++.+.+.|++| |++++..
T Consensus 257 ~v~~~~~-~-g~Dvvid~~G~---------------~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 257 VITELTA-G-GVDYSLDCAGT---------------AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp HHHHHHT-S-CBSEEEESSCC---------------HHHHHHHHHTBCTTTCEEEECC
T ss_pred HHHHHhC-C-CccEEEECCCC---------------HHHHHHHHHHhhcCCCEEEEEC
Confidence 1222211 2 58888877432 36788999999999 9997653
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0031 Score=54.37 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=66.9
Q ss_pred hcCCCCEEEEec-CCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----h
Q 041272 91 VVRKGDTVVDAT-CGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----M 164 (267)
Q Consensus 91 ~l~~~~~VLDlG-cG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l 164 (267)
.+++|++||-.| +|. |..+..+++..| ++|+++|.+++.++.+++. + .. ..+.....+ +
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G-----a~Vi~~~~~~~~~~~~~~~----G----a~--~~~~~~~~~~~~~~ 201 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALG-----AKLIGTVSSPEKAAHAKAL----G----AW--ETIDYSHEDVAKRV 201 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT-----CEEEEEESSHHHHHHHHHH----T----CS--EEEETTTSCHHHHH
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHHc----C----CC--EEEeCCCccHHHHH
Confidence 467899999999 454 888888888764 6999999999988888752 2 11 112211112 2
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+.. ....+|+++.+.+. ..+..+.+.|++||++++...
T Consensus 202 ~~~~-~~~g~Dvvid~~g~----------------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 202 LELT-DGKKCPVVYDGVGQ----------------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp HHHT-TTCCEEEEEESSCG----------------GGHHHHHTTEEEEEEEEECCC
T ss_pred HHHh-CCCCceEEEECCCh----------------HHHHHHHHHhcCCCEEEEEec
Confidence 2222 22369999887432 467788999999999987654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0032 Score=54.72 Aligned_cols=99 Identities=10% Similarity=0.115 Sum_probs=66.0
Q ss_pred hhcCCCCEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----
Q 041272 90 HVVRKGDTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR---- 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~---- 163 (267)
..+++|++||-.|+|+ |..+..+++..| ++|+++|.+++.++.+++. + .. ..+.....+
T Consensus 140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G-----a~Vi~~~~~~~~~~~~~~l----g----a~--~~~~~~~~~~~~~ 204 (340)
T 3gms_A 140 LNLQRNDVLLVNACGSAIGHLFAQLSQILN-----FRLIAVTRNNKHTEELLRL----G----AA--YVIDTSTAPLYET 204 (340)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHT-----CEEEEEESSSTTHHHHHHH----T----CS--EEEETTTSCHHHH
T ss_pred cccCCCCEEEEeCCccHHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHhC----C----Cc--EEEeCCcccHHHH
Confidence 4578999999999984 788888888764 6999999999988888762 2 11 112111112
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.+.. ....+|+++.+.+. ....++.+.|++||+++....
T Consensus 205 ~~~~~-~~~g~Dvvid~~g~----------------~~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 205 VMELT-NGIGADAAIDSIGG----------------PDGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp HHHHT-TTSCEEEEEESSCH----------------HHHHHHHHTEEEEEEEEECCC
T ss_pred HHHHh-CCCCCcEEEECCCC----------------hhHHHHHHHhcCCCEEEEEee
Confidence 22222 22369999887432 233445589999999987654
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0025 Score=55.57 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=66.2
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----M 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l 164 (267)
..+ +|++||-+|+|. |..+..+|+..|. .+|+++|.+++.++.+++. + .. .++.....+ +
T Consensus 164 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga----~~Vi~~~~~~~~~~~~~~~----G----a~--~~~~~~~~~~~~~v 228 (348)
T 2d8a_A 164 GPI-SGKSVLITGAGPLGLLGIAVAKASGA----YPVIVSEPSDFRRELAKKV----G----AD--YVINPFEEDVVKEV 228 (348)
T ss_dssp SCC-TTCCEEEECCSHHHHHHHHHHHHTTC----CSEEEECSCHHHHHHHHHH----T----CS--EEECTTTSCHHHHH
T ss_pred cCC-CCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHh----C----CC--EEECCCCcCHHHHH
Confidence 346 899999999975 7788888887642 3899999999888877642 2 11 112211112 2
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+.. ....+|+++...+. ...++.+.+.|++||+++...
T Consensus 229 ~~~~-~g~g~D~vid~~g~---------------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 229 MDIT-DGNGVDVFLEFSGA---------------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp HHHT-TTSCEEEEEECSCC---------------HHHHHHHHHHEEEEEEEEECC
T ss_pred HHHc-CCCCCCEEEECCCC---------------HHHHHHHHHHHhcCCEEEEEc
Confidence 2222 12359999887532 367888899999999997654
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0062 Score=53.50 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=67.5
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----h-h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----H-S 162 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~-~ 162 (267)
..+++|++||-+|+|. |..+..+|+..+. .+|+++|.+++..+.+++. + .. .++... . .
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~avqla~~~Ga----~~Vi~~~~~~~~~~~~~~l----G----a~--~vi~~~~~~~~~~~ 251 (373)
T 2fzw_A 186 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGA----SRIIGVDINKDKFARAKEF----G----AT--ECINPQDFSKPIQE 251 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTC----SEEEEECSCGGGHHHHHHH----T----CS--EEECGGGCSSCHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHHc----C----Cc--eEeccccccccHHH
Confidence 3567899999999877 8888888988742 3899999999998888652 2 11 112111 1 1
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEE
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVV 219 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 219 (267)
.+.+... . .+|+++-..+. ...++.+.+.|++| |++++..
T Consensus 252 ~v~~~~~-~-g~D~vid~~g~---------------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 252 VLIEMTD-G-GVDYSFECIGN---------------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp HHHHHTT-S-CBSEEEECSCC---------------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HHHHHhC-C-CCCEEEECCCc---------------HHHHHHHHHhhccCCcEEEEEe
Confidence 1222222 2 58888877432 35788999999999 9997654
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0077 Score=52.97 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=67.1
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----h-h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----H-S 162 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~-~ 162 (267)
..+++|++||-+|+|. |..+..+|+..+. .+|+++|.+++.++.+++. + .. .++... . +
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga----~~Vi~~~~~~~~~~~~~~l----G----a~--~vi~~~~~~~~~~~ 252 (374)
T 2jhf_A 187 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGA----ARIIGVDINKDKFAKAKEV----G----AT--ECVNPQDYKKPIQE 252 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEECSCGGGHHHHHHT----T----CS--EEECGGGCSSCHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHHh----C----Cc--eEecccccchhHHH
Confidence 3577899999999877 8888888888642 3899999999998888642 2 11 112111 1 1
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEE
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVV 219 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 219 (267)
.+.+... . .+|+++-..+. ...++.+.+.|++| |++++..
T Consensus 253 ~~~~~~~-~-g~D~vid~~g~---------------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 253 VLTEMSN-G-GVDFSFEVIGR---------------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp HHHHHTT-S-CBSEEEECSCC---------------HHHHHHHHHHBCTTTCEEEECS
T ss_pred HHHHHhC-C-CCcEEEECCCC---------------HHHHHHHHHHhhcCCcEEEEec
Confidence 1222221 2 58888877432 35788899999999 9997654
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0031 Score=54.60 Aligned_cols=97 Identities=21% Similarity=0.189 Sum_probs=65.3
Q ss_pred hcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----h
Q 041272 91 VVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----M 164 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l 164 (267)
.+++|++||-.|+ |. |..+..+++.. +++|+++|.+++.++.+++. + .. ..+.....+ +
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~~----g----a~--~~~~~~~~~~~~~~ 209 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMK-----GAHTIAVASTDEKLKIAKEY----G----AE--YLINASKEDILRQV 209 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHT----T----CS--EEEETTTSCHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHc----C----Cc--EEEeCCCchHHHHH
Confidence 4678999999994 43 78888888876 46999999999988877652 2 11 112211122 2
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+.. ....+|+++.+.+. ..++.+.+.|++||+++...
T Consensus 210 ~~~~-~~~g~D~vid~~g~----------------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 210 LKFT-NGKGVDASFDSVGK----------------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp HHHT-TTSCEEEEEECCGG----------------GGHHHHHHHEEEEEEEEECC
T ss_pred HHHh-CCCCceEEEECCCh----------------HHHHHHHHHhccCCEEEEEc
Confidence 2222 22369999887431 46778889999999998754
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.004 Score=54.56 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=66.6
Q ss_pred hhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-hhhh
Q 041272 89 KHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-RMEE 166 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-~l~~ 166 (267)
...+++|++||-+|+|. |..+..+|+..| ++|+++|.+++.++.+++ + + .. .++..... ++.+
T Consensus 174 ~~~~~~g~~VlV~GaG~vG~~~~qlak~~G-----a~Vi~~~~~~~~~~~~~~-l---G----a~--~v~~~~~~~~~~~ 238 (360)
T 1piw_A 174 RNGCGPGKKVGIVGLGGIGSMGTLISKAMG-----AETYVISRSSRKREDAMK-M---G----AD--HYIATLEEGDWGE 238 (360)
T ss_dssp HTTCSTTCEEEEECCSHHHHHHHHHHHHHT-----CEEEEEESSSTTHHHHHH-H---T----CS--EEEEGGGTSCHHH
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHCC-----CEEEEEcCCHHHHHHHHH-c---C----CC--EEEcCcCchHHHH
Confidence 34678999999999976 888888888764 589999999998888875 2 2 11 12221111 2222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
... ..+|+++-..+..+ ...++.+.+.|++||+++...
T Consensus 239 ~~~--~~~D~vid~~g~~~-------------~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 239 KYF--DTFDLIVVCASSLT-------------DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp HSC--SCEEEEEECCSCST-------------TCCTTTGGGGEEEEEEEEECC
T ss_pred Hhh--cCCCEEEECCCCCc-------------HHHHHHHHHHhcCCCEEEEec
Confidence 222 36999988753210 023456788999999987643
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0025 Score=54.70 Aligned_cols=91 Identities=14% Similarity=0.011 Sum_probs=61.6
Q ss_pred hhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc
Q 041272 89 KHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 167 (267)
...+++|++||-+|+|. |..+..+|+..| ++|++++ +++..+.+++ .| . -.++. + ....
T Consensus 137 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~G-----a~Vi~~~-~~~~~~~~~~----lG----a--~~v~~-d---~~~v 196 (315)
T 3goh_A 137 KIPLTKQREVLIVGFGAVNNLLTQMLNNAG-----YVVDLVS-ASLSQALAAK----RG----V--RHLYR-E---PSQV 196 (315)
T ss_dssp TSCCCSCCEEEEECCSHHHHHHHHHHHHHT-----CEEEEEC-SSCCHHHHHH----HT----E--EEEES-S---GGGC
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-----CEEEEEE-ChhhHHHHHH----cC----C--CEEEc-C---HHHh
Confidence 34577999999999976 888999998874 6999999 9988888865 22 1 11222 2 2222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
...+|+++-..+. ..+..+.+.|++||+++..
T Consensus 197 ---~~g~Dvv~d~~g~----------------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 197 ---TQKYFAIFDAVNS----------------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp ---CSCEEEEECC-----------------------TTGGGEEEEEEEEEE
T ss_pred ---CCCccEEEECCCc----------------hhHHHHHHHhcCCCEEEEE
Confidence 3468988876422 2336678999999999775
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0056 Score=53.31 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=67.4
Q ss_pred hhhcCCCCEEEEecCCC--ChHHHHHHHhc-CCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh--
Q 041272 89 KHVVRKGDTVVDATCGN--GYDTLMMLKMV-ADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR-- 163 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~--G~~~~~la~~~-~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~-- 163 (267)
...++++++||-.|+|+ |..+..+++.. | .+|+++|.+++.++.+++. + .. .++.....+
T Consensus 165 ~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~G-----a~Vi~~~~~~~~~~~~~~~----g----~~--~~~~~~~~~~~ 229 (347)
T 1jvb_A 165 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSG-----ATIIGVDVREEAVEAAKRA----G----AD--YVINASMQDPL 229 (347)
T ss_dssp HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTC-----CEEEEEESSHHHHHHHHHH----T----CS--EEEETTTSCHH
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHHHcCC-----CeEEEEcCCHHHHHHHHHh----C----CC--EEecCCCccHH
Confidence 34578899999999983 66777777775 4 5899999999988877542 2 11 111111111
Q ss_pred --hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 --MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 --l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.+.... ..+|+++.+.+. ...++.+.+.|++||+++....
T Consensus 230 ~~~~~~~~~-~~~d~vi~~~g~---------------~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 230 AEIRRITES-KGVDAVIDLNNS---------------EKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp HHHHHHTTT-SCEEEEEESCCC---------------HHHHTTGGGGEEEEEEEEECCS
T ss_pred HHHHHHhcC-CCceEEEECCCC---------------HHHHHHHHHHHhcCCEEEEECC
Confidence 2222221 369999988543 3578888999999999977543
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0075 Score=52.92 Aligned_cols=94 Identities=10% Similarity=0.086 Sum_probs=65.0
Q ss_pred CCCEEEEec-CCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec--C-hhhhhhcC
Q 041272 94 KGDTVVDAT-CGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM--C-HSRMEEIV 168 (267)
Q Consensus 94 ~~~~VLDlG-cG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~--~-~~~l~~~~ 168 (267)
+|++||=.| +|. |..+..+|+..+ +.+|+++|.+++.++.+++ .| .. .++.. + .+.+.+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~----g~~Vi~~~~~~~~~~~~~~----lG----ad--~vi~~~~~~~~~v~~~- 235 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT----DLTVIATASRPETQEWVKS----LG----AH--HVIDHSKPLAAEVAAL- 235 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC----CSEEEEECSSHHHHHHHHH----TT----CS--EEECTTSCHHHHHHTT-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHHHH----cC----CC--EEEeCCCCHHHHHHHh-
Confidence 788999998 666 899999998753 3799999999998888865 22 11 11211 1 1122222
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
....+|+++-+.+. ...++.+.+.|++||++++.
T Consensus 236 -~~~g~Dvvid~~g~---------------~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 236 -GLGAPAFVFSTTHT---------------DKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp -CSCCEEEEEECSCH---------------HHHHHHHHHHSCTTCEEEEC
T ss_pred -cCCCceEEEECCCc---------------hhhHHHHHHHhcCCCEEEEE
Confidence 23469988877421 35788999999999999865
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0049 Score=53.64 Aligned_cols=99 Identities=16% Similarity=0.079 Sum_probs=65.4
Q ss_pred hhhcCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-hhhh-
Q 041272 89 KHVVRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-HSRM- 164 (267)
Q Consensus 89 ~~~l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-~~~l- 164 (267)
...++++++||-.|+ |.|..+..+++.. +.+|+++|.+++..+.+++ .+ .. ..+... ..++
T Consensus 164 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-----Ga~V~~~~~~~~~~~~~~~----~g----~~--~~~d~~~~~~~~ 228 (347)
T 2hcy_A 164 SANLMAGHWVAISGAAGGLGSLAVQYAKAM-----GYRVLGIDGGEGKEELFRS----IG----GE--VFIDFTKEKDIV 228 (347)
T ss_dssp TTTCCTTCEEEEETTTSHHHHHHHHHHHHT-----TCEEEEEECSTTHHHHHHH----TT----CC--EEEETTTCSCHH
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHC-----CCcEEEEcCCHHHHHHHHH----cC----Cc--eEEecCccHhHH
Confidence 335778999999998 3477777777765 4699999999988777654 22 11 111111 1122
Q ss_pred ---hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 ---EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ---~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+.. .. .+|+++.+.+. ...++.+.+.|++||+++...
T Consensus 229 ~~~~~~~-~~-~~D~vi~~~g~---------------~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 229 GAVLKAT-DG-GAHGVINVSVS---------------EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp HHHHHHH-TS-CEEEEEECSSC---------------HHHHHHHTTSEEEEEEEEECC
T ss_pred HHHHHHh-CC-CCCEEEECCCc---------------HHHHHHHHHHHhcCCEEEEEe
Confidence 1111 12 58999988532 357889999999999997654
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0058 Score=54.45 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=64.3
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----hh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----ME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l~ 165 (267)
.+++|++||=+|+|. |..+..+|+..|. .+|+++|.+++.++.+++. | --.++.....+ +.
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga----~~Vi~~~~~~~~~~~~~~l----G------a~~vi~~~~~~~~~~i~ 275 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGA----SKVILSEPSEVRRNLAKEL----G------ADHVIDPTKENFVEAVL 275 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEECSCHHHHHHHHHH----T------CSEEECTTTSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHc----C------CCEEEcCCCCCHHHHHH
Confidence 477899999999977 8888889988742 4999999999998888753 2 11122211122 22
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcc----cCCcEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL----IPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~L----kpgG~l~i~~~ 220 (267)
+.. ....+|+++-..+. ....+..+.+.| ++||++++...
T Consensus 276 ~~t-~g~g~D~vid~~g~--------------~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 276 DYT-NGLGAKLFLEATGV--------------PQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp HHT-TTCCCSEEEECSSC--------------HHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred HHh-CCCCCCEEEECCCC--------------cHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 222 22358888876432 112444444455 99999987543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0076 Score=52.39 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=65.7
Q ss_pred hhcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh---
Q 041272 90 HVVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM--- 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l--- 164 (267)
..+++|++||-.|+ |. |..+..+++.. +++|++++.+++..+.+++. + ... ++... .++
T Consensus 155 ~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~~----g----a~~--v~~~~-~~~~~~ 218 (342)
T 4eye_A 155 GQLRAGETVLVLGAAGGIGTAAIQIAKGM-----GAKVIAVVNRTAATEFVKSV----G----ADI--VLPLE-EGWAKA 218 (342)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESSGGGHHHHHHH----T----CSE--EEESS-TTHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHhc----C----CcE--EecCc-hhHHHH
Confidence 35678999999998 43 88888888876 36999999999988887762 2 111 12211 222
Q ss_pred -hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 -EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 -~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+.. ....+|+++.+.+. ..++.+.+.|++||++++..
T Consensus 219 v~~~~-~~~g~Dvvid~~g~----------------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 219 VREAT-GGAGVDMVVDPIGG----------------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp HHHHT-TTSCEEEEEESCC------------------CHHHHHHTEEEEEEEEEC-
T ss_pred HHHHh-CCCCceEEEECCch----------------hHHHHHHHhhcCCCEEEEEE
Confidence 2222 22369999887532 35678889999999998754
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0048 Score=53.97 Aligned_cols=102 Identities=11% Similarity=0.110 Sum_probs=66.2
Q ss_pred hhhcCCC------CEEEEecCCC-ChHH-HHHH-HhcCCCCCCcEEEEEeCChH---HHHHHHHHHhhccccccccceEE
Q 041272 89 KHVVRKG------DTVVDATCGN-GYDT-LMML-KMVADESSAGCVYGLDIQSE---ALKSTSSLLDKTTSKAEKGLVKL 156 (267)
Q Consensus 89 ~~~l~~~------~~VLDlGcG~-G~~~-~~la-~~~~~~~p~~~v~giD~s~~---~i~~a~~~~~~~~~~~~~~~v~~ 156 (267)
...+++| ++||-+|+|. |..+ ..+| +..|. .+|+++|.+++ ..+.+++ .| ...+..
T Consensus 161 ~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga----~~Vi~~~~~~~~~~~~~~~~~----lG----a~~v~~ 228 (357)
T 2b5w_A 161 HAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGY----ENLYCLGRRDRPDPTIDIIEE----LD----ATYVDS 228 (357)
T ss_dssp HHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCC----CEEEEEECCCSSCHHHHHHHH----TT----CEEEET
T ss_pred hcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCC----cEEEEEeCCcccHHHHHHHHH----cC----CcccCC
Confidence 3457788 9999999866 7777 7788 76542 34999999988 7777764 22 111100
Q ss_pred EecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 157 FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...+..++.+. .. .+|+++-..+. ...++.+.+.|++||+++....
T Consensus 229 ~~~~~~~i~~~--~g-g~Dvvid~~g~---------------~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 229 RQTPVEDVPDV--YE-QMDFIYEATGF---------------PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp TTSCGGGHHHH--SC-CEEEEEECSCC---------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CccCHHHHHHh--CC-CCCEEEECCCC---------------hHHHHHHHHHHhcCCEEEEEeC
Confidence 00111112223 22 69999877432 3478889999999999977654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.004 Score=53.90 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=66.6
Q ss_pred hhcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----
Q 041272 90 HVVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR---- 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~---- 163 (267)
..+++|++||-.|+ | .|..+..+++.. +++|+++|.+++.++.+.+.+ + .. ..+.....+
T Consensus 145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~~~---g----~~--~~~~~~~~~~~~~ 210 (336)
T 4b7c_A 145 GQPKNGETVVISGAAGAVGSVAGQIARLK-----GCRVVGIAGGAEKCRFLVEEL---G----FD--GAIDYKNEDLAAG 210 (336)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHTT---C----CS--EEEETTTSCHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHHc---C----CC--EEEECCCHHHHHH
Confidence 45789999999998 3 378888888875 469999999998888773322 2 11 112111112
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.+.. ...+|+++.+.+ ...++.+.+.|++||++++...
T Consensus 211 ~~~~~--~~~~d~vi~~~g----------------~~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 211 LKREC--PKGIDVFFDNVG----------------GEILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp HHHHC--TTCEEEEEESSC----------------HHHHHHHHTTEEEEEEEEECCC
T ss_pred HHHhc--CCCceEEEECCC----------------cchHHHHHHHHhhCCEEEEEee
Confidence 22222 236999988743 1478889999999999987543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0041 Score=53.02 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=64.1
Q ss_pred cCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhcC
Q 041272 92 VRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEIV 168 (267)
Q Consensus 92 l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~ 168 (267)
+++|++||-.|+ | .|..+..+++.. +++|+++|.+++..+.+++ .+ .. ..+.... .++.+..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~----~g----a~--~~~~~~~~~~~~~~~ 187 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-----GLRVLAAASRPEKLALPLA----LG----AE--EAATYAEVPERAKAW 187 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-----TCEEEEEESSGGGSHHHHH----TT----CS--EEEEGGGHHHHHHHT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHh----cC----CC--EEEECCcchhHHHHh
Confidence 789999999998 3 378888888876 3699999999988887754 22 11 1222222 3333323
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..+|+++. .+. ..++.+.+.|++||+++...
T Consensus 188 ---~~~d~vid-~g~----------------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 188 ---GGLDLVLE-VRG----------------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp ---TSEEEEEE-CSC----------------TTHHHHHTTEEEEEEEEEC-
T ss_pred ---cCceEEEE-CCH----------------HHHHHHHHhhccCCEEEEEe
Confidence 35898887 643 34678899999999987654
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.003 Score=54.90 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=65.3
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----M 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l 164 (267)
..+ +|++||-+|+|. |..+..+|+..|. .+|+++|.+++.++.+++. .. .++.....+ +
T Consensus 161 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga----~~Vi~~~~~~~~~~~~~~l-a~----------~v~~~~~~~~~~~~ 224 (343)
T 2dq4_A 161 SGV-SGKSVLITGAGPIGLMAAMVVRASGA----GPILVSDPNPYRLAFARPY-AD----------RLVNPLEEDLLEVV 224 (343)
T ss_dssp TCC-TTSCEEEECCSHHHHHHHHHHHHTTC----CSEEEECSCHHHHGGGTTT-CS----------EEECTTTSCHHHHH
T ss_pred CCC-CCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHh-HH----------hccCcCccCHHHHH
Confidence 346 899999999966 7788888887642 3899999999887777653 11 112111112 2
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+.. ...+|+++...+. ...++.+.+.|++||+++...
T Consensus 225 ~~~~--~~g~D~vid~~g~---------------~~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 225 RRVT--GSGVEVLLEFSGN---------------EAAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp HHHH--SSCEEEEEECSCC---------------HHHHHHHHHHEEEEEEEEECC
T ss_pred HHhc--CCCCCEEEECCCC---------------HHHHHHHHHHHhcCCEEEEEe
Confidence 2222 2358999887532 357888999999999987653
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0035 Score=54.17 Aligned_cols=96 Identities=18% Similarity=0.122 Sum_probs=63.4
Q ss_pred hcCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec----Chh-h
Q 041272 91 VVRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM----CHS-R 163 (267)
Q Consensus 91 ~l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~----~~~-~ 163 (267)
.++++++||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++ + + .. ..+.. +.. .
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-----G~~V~~~~~~~~~~~~~~~-~---g----~~--~~~d~~~~~~~~~~ 206 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKLK-----GCKVVGAAGSDEKIAYLKQ-I---G----FD--AAFNYKTVNSLEEA 206 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHH-T---T----CS--EEEETTSCSCHHHH
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHh-c---C----Cc--EEEecCCHHHHHHH
Confidence 5778999999998 3466777777665 4699999999988887743 2 2 11 11111 111 1
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.+... ..+|+++.+.+. ..++.+.+.|++||++++..
T Consensus 207 ~~~~~~--~~~d~vi~~~g~----------------~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 207 LKKASP--DGYDCYFDNVGG----------------EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp HHHHCT--TCEEEEEESSCH----------------HHHHHHHTTEEEEEEEEECC
T ss_pred HHHHhC--CCCeEEEECCCh----------------HHHHHHHHHHhcCCEEEEEe
Confidence 222222 369999988531 35788899999999997654
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.02 Score=49.69 Aligned_cols=79 Identities=15% Similarity=0.072 Sum_probs=51.6
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
.+|+|+.||.|.++..+.+. |- +...|.++|+++.+++.-+.|... ..++.+|..++.....+...+|
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~--~~~~v~a~e~d~~a~~ty~~N~~~---------~~~~~~DI~~~~~~~~~~~~~D 71 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GL--DGEIVAAVDINTVANSVYKHNFPE---------TNLLNRNIQQLTPQVIKKWNVD 71 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TC--SEEEEEEECCCHHHHHHHHHHCTT---------SCEECCCGGGCCHHHHHHTTCC
T ss_pred CEEEEECcCccHHHHHHHHc-CC--CceEEEEEeCCHHHHHHHHHhCCC---------CceeccccccCCHHHhccCCCC
Confidence 38999999999999998875 11 013578999999998888776543 2234444443322110112589
Q ss_pred EEEEeCCCCCC
Q 041272 176 LVAFNLGYLPG 186 (267)
Q Consensus 176 ~ii~~~~~lp~ 186 (267)
+++..++.=++
T Consensus 72 ~l~ggpPCQ~f 82 (333)
T 4h0n_A 72 TILMSPPCQPF 82 (333)
T ss_dssp EEEECCCCCCS
T ss_pred EEEecCCCcch
Confidence 99998766444
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.023 Score=49.18 Aligned_cols=79 Identities=13% Similarity=-0.052 Sum_probs=51.5
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEE-EEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCV-YGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v-~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
..+|+|+.||.|.++..+.+. |- +...| .++|+++.+++.-+.|.... ++.+|..++.....+...
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G~--~~~~v~~a~e~d~~a~~ty~~N~~~~----------~~~~DI~~~~~~~i~~~~ 76 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-SI--NINATFIPFDINEIANKIYSKNFKEE----------VQVKNLDSISIKQIESLN 76 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-SC--CCCEEEEEECCCHHHHHHHHHHHCCC----------CBCCCTTTCCHHHHHHTC
T ss_pred CCEEEEECCChhHHHHHHHHc-CC--CceEEEEEEECCHHHHHHHHHHCCCC----------cccCChhhcCHHHhccCC
Confidence 458999999999999998875 20 01346 79999999998888876431 233333333211000125
Q ss_pred EEEEEEeCCCCCC
Q 041272 174 VRLVAFNLGYLPG 186 (267)
Q Consensus 174 ~d~ii~~~~~lp~ 186 (267)
+|+++..++.=++
T Consensus 77 ~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 77 CNTWFMSPPCQPY 89 (327)
T ss_dssp CCEEEECCCCTTC
T ss_pred CCEEEecCCccCc
Confidence 8999999876555
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0048 Score=53.91 Aligned_cols=97 Identities=13% Similarity=0.174 Sum_probs=65.1
Q ss_pred hhcCCCCEEEEec-CCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----h
Q 041272 90 HVVRKGDTVVDAT-CGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----R 163 (267)
Q Consensus 90 ~~l~~~~~VLDlG-cG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~ 163 (267)
..++++++||-.| +|. |..+..+++.. +++|+++|.+++.++.+++. + .. ..+..... .
T Consensus 163 ~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~l----G----a~--~~~~~~~~~~~~~ 227 (353)
T 4dup_A 163 AGLTEGESVLIHGGTSGIGTTAIQLARAF-----GAEVYATAGSTGKCEACERL----G----AK--RGINYRSEDFAAV 227 (353)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHH----T----CS--EEEETTTSCHHHH
T ss_pred cCCCCCCEEEEEcCCCHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHhc----C----CC--EEEeCCchHHHHH
Confidence 3577899999994 443 88888888876 46899999999988888752 2 11 11211111 1
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.+.. ...+|+++.+.+. ..+..+.+.|++||++++..
T Consensus 228 ~~~~~--~~g~Dvvid~~g~----------------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 228 IKAET--GQGVDIILDMIGA----------------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp HHHHH--SSCEEEEEESCCG----------------GGHHHHHHTEEEEEEEEECC
T ss_pred HHHHh--CCCceEEEECCCH----------------HHHHHHHHHhccCCEEEEEE
Confidence 22222 2369999887532 35678889999999997654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.01 Score=51.58 Aligned_cols=97 Identities=19% Similarity=0.244 Sum_probs=65.6
Q ss_pred hcCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----h
Q 041272 91 VVRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----M 164 (267)
Q Consensus 91 ~l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l 164 (267)
.++++++||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. + ... ++.....+ +
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~-----G~~Vi~~~~~~~~~~~~~~~----g----a~~--~~d~~~~~~~~~~ 227 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF-----GARVIATAGSEDKLRRAKAL----G----ADE--TVNYTHPDWPKEV 227 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHH----T----CSE--EEETTSTTHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHhc----C----CCE--EEcCCcccHHHHH
Confidence 5778999999998 4588888888875 36999999999988887642 2 111 12211112 2
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+.. ....+|+++.+.+. ..++.+.+.|+++|+++...
T Consensus 228 ~~~~-~~~~~d~vi~~~g~----------------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 228 RRLT-GGKGADKVVDHTGA----------------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp HHHT-TTTCEEEEEESSCS----------------SSHHHHHHHEEEEEEEEESS
T ss_pred HHHh-CCCCceEEEECCCH----------------HHHHHHHHhhccCCEEEEEe
Confidence 2222 12369999988541 34678889999999987654
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.021 Score=50.04 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=66.3
Q ss_pred hcCCCCEEEEec-CC-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----h
Q 041272 91 VVRKGDTVVDAT-CG-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----M 164 (267)
Q Consensus 91 ~l~~~~~VLDlG-cG-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l 164 (267)
.+++|++||-.| +| .|..+..+|+..| ++|+++|.+++.++.+++ .+ .. .++.....+ +
T Consensus 160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G-----a~Vi~~~~~~~~~~~~~~----~G----a~--~~~~~~~~~~~~~~ 224 (362)
T 2c0c_A 160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAK-----CHVIGTCSSDEKSAFLKS----LG----CD--RPINYKTEPVGTVL 224 (362)
T ss_dssp CCCTTCEEEETTTTBTTHHHHHHHHHHTT-----CEEEEEESSHHHHHHHHH----TT----CS--EEEETTTSCHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHhCC-----CEEEEEECCHHHHHHHHH----cC----Cc--EEEecCChhHHHHH
Confidence 578899999999 34 4888889998763 689999999988888765 22 11 112111112 2
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+.. ...+|+++.+.+. ..++.+.+.|+++|++++...
T Consensus 225 ~~~~--~~g~D~vid~~g~----------------~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 225 KQEY--PEGVDVVYESVGG----------------AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp HHHC--TTCEEEEEECSCT----------------HHHHHHHHHEEEEEEEEECCC
T ss_pred HHhc--CCCCCEEEECCCH----------------HHHHHHHHHHhcCCEEEEEeC
Confidence 2222 2369999887531 477888999999999877544
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.016 Score=49.73 Aligned_cols=96 Identities=19% Similarity=0.093 Sum_probs=63.1
Q ss_pred HhhhcCCCCEEEEec-CCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh-h
Q 041272 88 WKHVVRKGDTVVDAT-CGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR-M 164 (267)
Q Consensus 88 ~~~~l~~~~~VLDlG-cG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~-l 164 (267)
....+++|++||=+| +|. |..+..+|+..| ++|++++ +++..+.+++ .+ .. ..+.....+ +
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G-----a~vi~~~-~~~~~~~~~~----lG----a~--~~i~~~~~~~~ 209 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKG-----TTVITTA-SKRNHAFLKA----LG----AE--QCINYHEEDFL 209 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTT-----CEEEEEE-CHHHHHHHHH----HT----CS--EEEETTTSCHH
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcC-----CEEEEEe-ccchHHHHHH----cC----CC--EEEeCCCcchh
Confidence 334678999999997 776 899999999864 6899998 4444555544 33 11 123222222 3
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.+.. ..+|+++-..+- ..+..+.+.|++||+++..
T Consensus 210 ~~~~---~g~D~v~d~~g~----------------~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 210 LAIS---TPVDAVIDLVGG----------------DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp HHCC---SCEEEEEESSCH----------------HHHHHHGGGEEEEEEEEEC
T ss_pred hhhc---cCCCEEEECCCc----------------HHHHHHHHhccCCCEEEEe
Confidence 3332 258988877431 3348889999999999764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.011 Score=50.84 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=62.1
Q ss_pred cCCCC-EEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 92 VRKGD-TVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 92 l~~~~-~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
++++. +||=.|+ |. |..+..+|+..| ++|+++|.+++..+.+++. | ... ++.....+.....
T Consensus 143 ~~~~~g~VlV~Ga~G~vG~~aiqla~~~G-----a~Vi~~~~~~~~~~~~~~l----G----a~~--vi~~~~~~~~~~~ 207 (324)
T 3nx4_A 143 IRPQDGEVVVTGASGGVGSTAVALLHKLG-----YQVAAVSGRESTHGYLKSL----G----ANR--ILSRDEFAESRPL 207 (324)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTT-----CCEEEEESCGGGHHHHHHH----T----CSE--EEEGGGSSCCCSS
T ss_pred cCCCCCeEEEECCCcHHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHhc----C----CCE--EEecCCHHHHHhh
Confidence 55432 4999997 44 889999999864 6999999999998888762 2 111 1111111111111
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
. ...+|+++-..+ ...++.+.+.|+++|+++...
T Consensus 208 ~-~~~~d~v~d~~g----------------~~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 208 E-KQLWAGAIDTVG----------------DKVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp C-CCCEEEEEESSC----------------HHHHHHHHHTEEEEEEEEECC
T ss_pred c-CCCccEEEECCC----------------cHHHHHHHHHHhcCCEEEEEe
Confidence 1 236888776632 147889999999999997654
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.012 Score=51.19 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=63.3
Q ss_pred CCCEEEEe-cCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec--C-hhhhhhcC
Q 041272 94 KGDTVVDA-TCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM--C-HSRMEEIV 168 (267)
Q Consensus 94 ~~~~VLDl-GcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~--~-~~~l~~~~ 168 (267)
+|++||=. |+|. |..+..+|+.. +++|+++|.+++.++.+++. + .. .++.. + ...+.+.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-----Ga~Vi~~~~~~~~~~~~~~l----G----a~--~vi~~~~~~~~~~~~~- 213 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-----GLRVITTASRNETIEWTKKM----G----AD--IVLNHKESLLNQFKTQ- 213 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-----TCEEEEECCSHHHHHHHHHH----T----CS--EEECTTSCHHHHHHHH-
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHhc----C----Cc--EEEECCccHHHHHHHh-
Confidence 78999999 5665 88888888876 36999999999988888762 2 11 11111 1 1122223
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
....+|+++-+.+. ...++.+.+.|++||+++..
T Consensus 214 -~~~g~Dvv~d~~g~---------------~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 214 -GIELVDYVFCTFNT---------------DMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp -TCCCEEEEEESSCH---------------HHHHHHHHHHEEEEEEEEES
T ss_pred -CCCCccEEEECCCc---------------hHHHHHHHHHhccCCEEEEE
Confidence 22369988876421 35678899999999999653
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0066 Score=53.12 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=65.5
Q ss_pred hhcC-CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-Chhhhhh
Q 041272 90 HVVR-KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHSRMEE 166 (267)
Q Consensus 90 ~~l~-~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l~~ 166 (267)
..++ +|++||-+|+|. |..+..+|+..| ++|+++|.+++..+.+++.+ + ... ++.. +...+.+
T Consensus 175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~G-----a~Vi~~~~~~~~~~~~~~~l---G----a~~--vi~~~~~~~~~~ 240 (357)
T 2cf5_A 175 FGLKQPGLRGGILGLGGVGHMGVKIAKAMG-----HHVTVISSSNKKREEALQDL---G----ADD--YVIGSDQAKMSE 240 (357)
T ss_dssp TSTTSTTCEEEEECCSHHHHHHHHHHHHHT-----CEEEEEESSTTHHHHHHTTS---C----CSC--EEETTCHHHHHH
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHCC-----CeEEEEeCChHHHHHHHHHc---C----Cce--eeccccHHHHHH
Confidence 3566 899999999876 788888888764 68999999998887776432 2 111 1211 1122222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.. ..+|+++-..+. ...++.+.+.|++||+++....
T Consensus 241 ~~---~g~D~vid~~g~---------------~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 241 LA---DSLDYVIDTVPV---------------HHALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp ST---TTEEEEEECCCS---------------CCCSHHHHTTEEEEEEEEECSC
T ss_pred hc---CCCCEEEECCCC---------------hHHHHHHHHHhccCCEEEEeCC
Confidence 22 258999877542 1235677889999999976543
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.02 Score=49.28 Aligned_cols=74 Identities=12% Similarity=-0.065 Sum_probs=51.2
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
++|||+-||.|.++.-+-+. | -.-|.++|+++.+++.-+.|... .++.+|..++.....+ ++|
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G----~~~v~a~e~d~~a~~ty~~N~~~----------~~~~~DI~~i~~~~~~--~~D 63 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-G----FRIICANEYDKSIWKTYESNHSA----------KLIKGDISKISSDEFP--KCD 63 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-T----CEEEEEEECCTTTHHHHHHHCCS----------EEEESCGGGCCGGGSC--CCS
T ss_pred CeEEEeCcCccHHHHHHHHC-C----CEEEEEEeCCHHHHHHHHHHCCC----------CcccCChhhCCHhhCC--ccc
Confidence 47999999999999888765 2 23567999999988887776421 3455565555332222 589
Q ss_pred EEEEeCCCCCC
Q 041272 176 LVAFNLGYLPG 186 (267)
Q Consensus 176 ~ii~~~~~lp~ 186 (267)
+++..++.=++
T Consensus 64 ~l~ggpPCQ~f 74 (331)
T 3ubt_Y 64 GIIGGPPSQSW 74 (331)
T ss_dssp EEECCCCGGGT
T ss_pred EEEecCCCCCc
Confidence 99988765443
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0048 Score=53.58 Aligned_cols=98 Identities=19% Similarity=0.184 Sum_probs=65.5
Q ss_pred hhcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec----Ch-h
Q 041272 90 HVVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM----CH-S 162 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~----~~-~ 162 (267)
..+++|++||-.|+ | .|..+..+++.. +++|+++|.+++.++.+++.+ + .. ..+.. +. .
T Consensus 151 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-----G~~V~~~~~~~~~~~~~~~~~---g----~~--~~~d~~~~~~~~~ 216 (345)
T 2j3h_A 151 CSPKEGETVYVSAASGAVGQLVGQLAKMM-----GCYVVGSAGSKEKVDLLKTKF---G----FD--DAFNYKEESDLTA 216 (345)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHTS---C----CS--EEEETTSCSCSHH
T ss_pred hCCCCCCEEEEECCCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHHc---C----Cc--eEEecCCHHHHHH
Confidence 35778999999997 3 477778888775 368999999998888776432 2 11 11111 11 1
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+..... ..+|+++.+.+ ...++.+.+.|++||++++..
T Consensus 217 ~~~~~~~--~~~d~vi~~~g----------------~~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 217 ALKRCFP--NGIDIYFENVG----------------GKMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp HHHHHCT--TCEEEEEESSC----------------HHHHHHHHTTEEEEEEEEECC
T ss_pred HHHHHhC--CCCcEEEECCC----------------HHHHHHHHHHHhcCCEEEEEc
Confidence 2222221 36999988742 147888999999999997754
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0015 Score=70.77 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=54.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCC--CcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESS--AGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+..+|||||.|+|..+..+.+.++. .| ..+++-.|+|+...+.|+++++... ++.-..+..+.. ...
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~-~~~~~~~yt~td~s~~~~~~a~~~f~~~d-------i~~~~~d~~~~~--~~~ 1308 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNT-QPVMDLDYTATDRNPQALEAAQAKLEQLH-------VTQGQWDPANPA--PGS 1308 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTT-SSSCEEEEEEECSSSSSTTTTTTTHHHHT-------EEEECCCSSCCC--C--
T ss_pred CCCceEEEECCCccHHHHHHHHhhcc-cCcccceEEEecCChHHHHHHHHHhhhcc-------cccccccccccc--cCC
Confidence 45779999999999888776666542 11 2478889999999988888765421 221100110000 001
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...||+|+.. .++|..++....++++.++|||||.+++..
T Consensus 1309 ~~~ydlvia~---------~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1309 LGKADLLVCN---------CALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp ---CCEEEEE---------CC--------------------CCEEEEEE
T ss_pred CCceeEEEEc---------ccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 2358998876 355555666789999999999999998764
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0095 Score=51.78 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=64.3
Q ss_pred hhcCCCCEEEEec-CCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc
Q 041272 90 HVVRKGDTVVDAT-CGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 90 ~~l~~~~~VLDlG-cG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 167 (267)
..+++|++||-+| +|. |..+..+++.. +++|+++ .+++.++.+++ .+ ... +. ...++.+.
T Consensus 146 ~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~-----Ga~Vi~~-~~~~~~~~~~~----lG----a~~---i~-~~~~~~~~ 207 (343)
T 3gaz_A 146 AQVQDGQTVLIQGGGGGVGHVAIQIALAR-----GARVFAT-ARGSDLEYVRD----LG----ATP---ID-ASREPEDY 207 (343)
T ss_dssp TCCCTTCEEEEETTTSHHHHHHHHHHHHT-----TCEEEEE-ECHHHHHHHHH----HT----SEE---EE-TTSCHHHH
T ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHC-----CCEEEEE-eCHHHHHHHHH----cC----CCE---ec-cCCCHHHH
Confidence 3567899999999 444 88888899876 3689999 88888777755 22 111 22 22222221
Q ss_pred ---CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 ---VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 ---~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
......+|+++-+.+- ..+..+.+.|++||+++...
T Consensus 208 ~~~~~~~~g~D~vid~~g~----------------~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 208 AAEHTAGQGFDLVYDTLGG----------------PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp HHHHHTTSCEEEEEESSCT----------------HHHHHHHHHEEEEEEEEESC
T ss_pred HHHHhcCCCceEEEECCCc----------------HHHHHHHHHHhcCCeEEEEc
Confidence 1122369998887431 57888899999999997643
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.015 Score=52.61 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=66.2
Q ss_pred hhcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh------
Q 041272 90 HVVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH------ 161 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~------ 161 (267)
..+++|++||=+|+ |. |..+..+|+.. +++|++++.+++.++.+++. | .. .++....
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~-----Ga~vi~~~~~~~~~~~~~~l----G----a~--~vi~~~~~d~~~~ 288 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAG-----GANPICVVSSPQKAEICRAM----G----AE--AIIDRNAEGYRFW 288 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHH----T----CC--EEEETTTTTCCSE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-----CCeEEEEECCHHHHHHHHhh----C----Cc--EEEecCcCccccc
Confidence 35778999999998 54 88888999886 46899999999888888652 2 01 1111111
Q ss_pred ---------------hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 162 ---------------SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 162 ---------------~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..+.+.. ....+|+++-+.+ ...+..+.+.|++||++++..
T Consensus 289 ~~~~~~~~~~~~~~~~~i~~~t-~g~g~Dvvid~~G----------------~~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 289 KDENTQDPKEWKRFGKRIRELT-GGEDIDIVFEHPG----------------RETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp EETTEECHHHHHHHHHHHHHHH-TSCCEEEEEECSC----------------HHHHHHHHHHEEEEEEEEESC
T ss_pred ccccccchHHHHHHHHHHHHHh-CCCCCcEEEEcCC----------------chhHHHHHHHhhCCcEEEEEe
Confidence 1122211 1236898887742 157888899999999997653
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.014 Score=50.89 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=64.1
Q ss_pred hhcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----h
Q 041272 90 HVVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----R 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~ 163 (267)
..+++|++||-.|+ | .|..+..+++.. +++|+++|.+++.++.+++. + .. ..+..... .
T Consensus 158 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~~----g----~~--~~~~~~~~~~~~~ 222 (354)
T 2j8z_A 158 GNVQAGDYVLIHAGLSGVGTAAIQLTRMA-----GAIPLVTAGSQKKLQMAEKL----G----AA--AGFNYKKEDFSEA 222 (354)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHH----T----CS--EEEETTTSCHHHH
T ss_pred cCCCCCCEEEEECCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHc----C----Cc--EEEecCChHHHHH
Confidence 35778999999984 3 377777777765 46999999999988887442 2 11 11111111 1
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.+... ...+|+++.+.+. ..+..+.+.|++||++++...
T Consensus 223 ~~~~~~-~~~~d~vi~~~G~----------------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 223 TLKFTK-GAGVNLILDCIGG----------------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp HHHHTT-TSCEEEEEESSCG----------------GGHHHHHHHEEEEEEEEECCC
T ss_pred HHHHhc-CCCceEEEECCCc----------------hHHHHHHHhccCCCEEEEEec
Confidence 222221 2369999988532 246778899999999977543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.012 Score=51.72 Aligned_cols=99 Identities=10% Similarity=0.041 Sum_probs=64.5
Q ss_pred hhhcC-CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe-cChhhhh
Q 041272 89 KHVVR-KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN-MCHSRME 165 (267)
Q Consensus 89 ~~~l~-~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~~~~~l~ 165 (267)
...+. +|++||-+|+|. |..+..+|+.. +++|+++|.+++..+.+++.+ + .. .++. .+...+.
T Consensus 181 ~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~-----Ga~Vi~~~~~~~~~~~~~~~l---G----a~--~v~~~~~~~~~~ 246 (366)
T 1yqd_A 181 YFGLDEPGKHIGIVGLGGLGHVAVKFAKAF-----GSKVTVISTSPSKKEEALKNF---G----AD--SFLVSRDQEQMQ 246 (366)
T ss_dssp HTTCCCTTCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCGGGHHHHHHTS---C----CS--EEEETTCHHHHH
T ss_pred hcCcCCCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHhc---C----Cc--eEEeccCHHHHH
Confidence 33566 899999999876 77778888776 368999999998887776432 2 11 1121 1112232
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.. ..+|+++.+.+.- ..++.+.+.|++||+++...
T Consensus 247 ~~~---~~~D~vid~~g~~---------------~~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 247 AAA---GTLDGIIDTVSAV---------------HPLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp HTT---TCEEEEEECCSSC---------------CCSHHHHHHEEEEEEEEECC
T ss_pred Hhh---CCCCEEEECCCcH---------------HHHHHHHHHHhcCCEEEEEc
Confidence 222 2599998875420 13466778899999987654
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0098 Score=52.32 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=60.8
Q ss_pred cCCCCEEEEec-CCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 92 VRKGDTVVDAT-CGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlG-cG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
+++|++||=.| +|. |..+..+|+..| ++|++++ +++..+.+++ .+ .. .++.....++.+...
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G-----a~Vi~~~-~~~~~~~~~~----lG----a~--~v~~~~~~~~~~~~~ 244 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWD-----AHVTAVC-SQDASELVRK----LG----AD--DVIDYKSGSVEEQLK 244 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTT-----CEEEEEE-CGGGHHHHHH----TT----CS--EEEETTSSCHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCC-----CEEEEEe-ChHHHHHHHH----cC----CC--EEEECCchHHHHHHh
Confidence 67899999999 565 888888888763 6899999 6766666643 22 11 112211112222111
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+...+|+++-+.+. ....+..+.+.|++||+++...
T Consensus 245 ~~~g~D~vid~~g~--------------~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 245 SLKPFDFILDNVGG--------------STETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp TSCCBSEEEESSCT--------------THHHHGGGGBCSSSCCEEEESC
T ss_pred hcCCCCEEEECCCC--------------hhhhhHHHHHhhcCCcEEEEeC
Confidence 11358888877432 0134577788999999986643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0082 Score=52.42 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=63.6
Q ss_pred hhcCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----
Q 041272 90 HVVRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR---- 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~---- 163 (267)
..++++++||-.|+ |.|..+..+++.. +++|+++|.+++.++.+++. + .. ..+.....+
T Consensus 166 ~~~~~g~~vlV~GasggiG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~~----g----a~--~~~d~~~~~~~~~ 230 (351)
T 1yb5_A 166 ACVKAGESVLVHGASGGVGLAACQIARAY-----GLKILGTAGTEEGQKIVLQN----G----AH--EVFNHREVNYIDK 230 (351)
T ss_dssp SCCCTTCEEEEETCSSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHT----T----CS--EEEETTSTTHHHH
T ss_pred hCCCCcCEEEEECCCChHHHHHHHHHHHC-----CCEEEEEeCChhHHHHHHHc----C----CC--EEEeCCCchHHHH
Confidence 35778999999997 3377777777765 46899999999888766542 2 11 112111112
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.+... ...+|+++.+.+ ...+..+.+.|++||++++..
T Consensus 231 ~~~~~~-~~~~D~vi~~~G----------------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 231 IKKYVG-EKGIDIIIEMLA----------------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHHHHC-TTCEEEEEESCH----------------HHHHHHHHHHEEEEEEEEECC
T ss_pred HHHHcC-CCCcEEEEECCC----------------hHHHHHHHHhccCCCEEEEEe
Confidence 222111 235899988742 135778899999999997653
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.018 Score=54.95 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=67.3
Q ss_pred CCEEEEecCCCChHHHHHHHhcCC---CCC-----CcEEEEEeCChHHHHHHHHHH--------------hhccc-----
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVAD---ESS-----AGCVYGLDIQSEALKSTSSLL--------------DKTTS----- 147 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~---~~p-----~~~v~giD~s~~~i~~a~~~~--------------~~~~~----- 147 (267)
.-+|+|+|.|+|...+.+.+.... .+| ..+++++|..|-..+..++-+ .....
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 359999999999988887664310 001 157999999553333333211 11100
Q ss_pred -cccc----cceEEEecChhhhhhcCC--CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 148 -KAEK----GLVKLFNMCHSRMEEIVP--KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 148 -~~~~----~~v~~~~~~~~~l~~~~~--~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
+..+ -.++++.+|..+....+. .+..+|.++.|. +-|....... ..+++..+.++++|||.+.
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~-f~p~~np~~w-----~~~~~~~l~~~~~~g~~~~ 208 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDG-FAPAKNPDMW-----NEQLFNAMARMTRPGGTFS 208 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECS-SCC--CCTTC-----SHHHHHHHHHHEEEEEEEE
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECC-CCCCCChhhh-----hHHHHHHHHHHhCCCCEEE
Confidence 0001 245667777766554332 135799999984 2121111111 1578999999999999874
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.011 Score=50.45 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=44.9
Q ss_pred ccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCcee-------e----chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVI-------T----TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 151 ~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~-------~----~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..++.++++|..+....++ +.+||+|++|++|....+..-. . .......+++++.++|||||.+++..
T Consensus 19 ~~~~~i~~gD~~~~l~~l~-~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 19 FGVHRLHVGDAREVLASFP-EASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp --CEEEEESCHHHHHTTSC-TTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCEEEECcHHHHHhhCC-CCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3567889988877544443 3589999999999654321100 0 01223567889999999999998875
Q ss_pred e
Q 041272 220 Y 220 (267)
Q Consensus 220 ~ 220 (267)
.
T Consensus 98 ~ 98 (297)
T 2zig_A 98 G 98 (297)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.013 Score=50.43 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=64.6
Q ss_pred hcCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----hh
Q 041272 91 VVRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----RM 164 (267)
Q Consensus 91 ~l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~l 164 (267)
.++++++||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. + .. ..+..... .+
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-----G~~V~~~~~~~~~~~~~~~~----g----~~--~~~~~~~~~~~~~~ 201 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKAL-----GAKLIGTVGTAQKAQSALKA----G----AW--QVINYREEDLVERL 201 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHH----T----CS--EEEETTTSCHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHc----C----CC--EEEECCCccHHHHH
Confidence 5678999999993 3377777777765 36999999999888877652 2 11 11111111 22
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+... ...+|+++.+.+ ...++.+.+.|++||+++....
T Consensus 202 ~~~~~-~~~~D~vi~~~g----------------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 202 KEITG-GKKVRVVYDSVG----------------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp HHHTT-TCCEEEEEECSC----------------GGGHHHHHHTEEEEEEEEECCC
T ss_pred HHHhC-CCCceEEEECCc----------------hHHHHHHHHHhcCCCEEEEEec
Confidence 22221 236999998853 1467888999999999976543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.017 Score=49.72 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=62.5
Q ss_pred hhcCCCC-EEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh--h-
Q 041272 90 HVVRKGD-TVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS--R- 163 (267)
Q Consensus 90 ~~l~~~~-~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~--~- 163 (267)
..+++++ +||-.|+ |. |..+..+|+..| ++|++++.+++.++.+++ .+ ... ++..... +
T Consensus 144 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G-----a~vi~~~~~~~~~~~~~~----lG----a~~--~i~~~~~~~~~ 208 (328)
T 1xa0_A 144 HGLTPERGPVLVTGATGGVGSLAVSMLAKRG-----YTVEASTGKAAEHDYLRV----LG----AKE--VLAREDVMAER 208 (328)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHTT-----CCEEEEESCTTCHHHHHH----TT----CSE--EEECC------
T ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHHCC-----CEEEEEECCHHHHHHHHH----cC----CcE--EEecCCcHHHH
Confidence 3467775 8999997 44 888888998864 689999999888888765 22 111 1111111 1
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+... . ...+|+++-+.+. ..+..+.+.|++||++++..
T Consensus 209 ~~~~-~-~~~~d~vid~~g~----------------~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 209 IRPL-D-KQRWAAAVDPVGG----------------RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp ---C-C-SCCEEEEEECSTT----------------TTHHHHHHTEEEEEEEEECS
T ss_pred HHHh-c-CCcccEEEECCcH----------------HHHHHHHHhhccCCEEEEEe
Confidence 1111 1 2358988877432 24678889999999997654
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.016 Score=50.02 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=64.8
Q ss_pred hcCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----hh
Q 041272 91 VVRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----RM 164 (267)
Q Consensus 91 ~l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~l 164 (267)
.++++++||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. + .. ..+..... .+
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-----G~~Vi~~~~~~~~~~~~~~~----g----~~--~~~d~~~~~~~~~i 206 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHL-----GATVIGTVSTEEKAETARKL----G----CH--HTINYSTQDFAEVV 206 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHH----T----CS--EEEETTTSCHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHc----C----CC--EEEECCCHHHHHHH
Confidence 5778999999995 4477778888775 46999999999888877652 2 11 11111111 12
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+... ...+|+++.+.+. ..++.+.+.|++||+++....
T Consensus 207 ~~~~~-~~~~d~vi~~~g~----------------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 207 REITG-GKGVDVVYDSIGK----------------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp HHHHT-TCCEEEEEECSCT----------------TTHHHHHHTEEEEEEEEECCC
T ss_pred HHHhC-CCCCeEEEECCcH----------------HHHHHHHHhhccCCEEEEEec
Confidence 22211 2259999988542 357788899999999876543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.02 Score=49.29 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=63.3
Q ss_pred hcCCCC-EEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh-hh
Q 041272 91 VVRKGD-TVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM-EE 166 (267)
Q Consensus 91 ~l~~~~-~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l-~~ 166 (267)
.+++++ +||-.|+ |. |..+..+|+..| ++|++++.+++.++.+++. + ... ++. ..+. .+
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G-----a~vi~~~~~~~~~~~~~~l----G----a~~--v~~--~~~~~~~ 208 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRG-----YDVVASTGNREAADYLKQL----G----ASE--VIS--REDVYDG 208 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHT-----CCEEEEESSSSTHHHHHHH----T----CSE--EEE--HHHHCSS
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHHc----C----CcE--EEE--CCCchHH
Confidence 467775 8999997 44 888888888864 5899999998888877652 2 111 121 1111 11
Q ss_pred cC--CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 167 IV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~~--~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. .....+|+++.+.+. ..+..+.+.|++||++++..
T Consensus 209 ~~~~~~~~~~d~vid~~g~----------------~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 209 TLKALSKQQWQGAVDPVGG----------------KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp CCCSSCCCCEEEEEESCCT----------------HHHHHHHTTEEEEEEEEECC
T ss_pred HHHHhhcCCccEEEECCcH----------------HHHHHHHHhhcCCCEEEEEe
Confidence 00 012358988877432 46788899999999997654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.017 Score=50.29 Aligned_cols=99 Identities=16% Similarity=0.080 Sum_probs=65.2
Q ss_pred hhcCCC--CEEEEecCC--CChHHHHHHHhcCCCCCCc-EEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh--
Q 041272 90 HVVRKG--DTVVDATCG--NGYDTLMMLKMVADESSAG-CVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-- 162 (267)
Q Consensus 90 ~~l~~~--~~VLDlGcG--~G~~~~~la~~~~~~~p~~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-- 162 (267)
..++++ ++||-.|++ .|..+..+++.. +. +|+++|.+++.++.+++.+ + .. ..+.....
T Consensus 154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-----Ga~~Vi~~~~~~~~~~~~~~~~---g----~~--~~~d~~~~~~ 219 (357)
T 2zb4_A 154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFL-----GCSRVVGICGTHEKCILLTSEL---G----FD--AAINYKKDNV 219 (357)
T ss_dssp SCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-----TCSEEEEEESCHHHHHHHHHTS---C----CS--EEEETTTSCH
T ss_pred cCCCCCCccEEEEECCCcHHHHHHHHHHHHC-----CCCeEEEEeCCHHHHHHHHHHc---C----Cc--eEEecCchHH
Confidence 357789 999999983 367777777765 35 9999999988877776532 2 11 11111111
Q ss_pred --hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 163 --RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 163 --~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+.+... . .+|+++.+.+ ...++.+.+.|++||++++...
T Consensus 220 ~~~~~~~~~-~-~~d~vi~~~G----------------~~~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 220 AEQLRESCP-A-GVDVYFDNVG----------------GNISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp HHHHHHHCT-T-CEEEEEESCC----------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHHHHhcC-C-CCCEEEECCC----------------HHHHHHHHHHhccCcEEEEECC
Confidence 1222222 2 6899998843 1578889999999999976543
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.26 Score=42.62 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=73.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-----------------ccccceE
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-----------------AEKGLVK 155 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-----------------~~~~~v~ 155 (267)
.+...|+.+|||.......+....+ +.+++-||. |+.++.-++.+.+.+.- ....+..
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~----~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 170 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFP----HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYK 170 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCT----TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEE
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCC----CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceE
Confidence 3557899999999999999887532 478999998 88888888877764200 0125677
Q ss_pred EEecChhhhh------hcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 156 LFNMCHSRME------EIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 156 ~~~~~~~~l~------~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
++..|..+.. ..........++++- .++. .++...++++.+.+.. |+|.+++.+...
T Consensus 171 ~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaE---------gvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~ 235 (334)
T 1rjd_A 171 LAACDLNDITETTRLLDVCTKREIPTIVISE---------CLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIG 235 (334)
T ss_dssp EEECCTTCHHHHHHHHHTTCCTTSCEEEEEE---------SCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred EEecCCCCcHHHHHHHHhcCCCCCCEEEEEc---------chhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccC
Confidence 8877666421 111121233444443 1221 3456678888888876 788876665543
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.044 Score=47.84 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=63.6
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhc-CCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh---hhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMV-ADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH---SRM 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~-~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~---~~l 164 (267)
..+++|++||=+|+|. |..+..+|+.. | ++|+++|.+++.++.+++ .| .. .++.... ..+
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~G-----a~Vi~~~~~~~~~~~~~~----lG----a~--~vi~~~~~~~~~v 246 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTP-----ATVIALDVKEEKLKLAER----LG----AD--HVVDARRDPVKQV 246 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCC-----CEEEEEESSHHHHHHHHH----TT----CS--EEEETTSCHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCHHHHHHHHH----hC----CC--EEEeccchHHHHH
Confidence 4678999999999976 77778888876 4 589999999998888864 22 11 1121111 122
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHH--HHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM--ALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~--~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+.. ....+|+++-..+. .. .++.+.+. +||+++....
T Consensus 247 ~~~~-~g~g~Dvvid~~G~---------------~~~~~~~~~~~~--~~G~~v~~g~ 286 (359)
T 1h2b_A 247 MELT-RGRGVNVAMDFVGS---------------QATVDYTPYLLG--RMGRLIIVGY 286 (359)
T ss_dssp HHHT-TTCCEEEEEESSCC---------------HHHHHHGGGGEE--EEEEEEECCC
T ss_pred HHHh-CCCCCcEEEECCCC---------------chHHHHHHHhhc--CCCEEEEEeC
Confidence 2222 12269999887432 23 66677776 8998876543
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.06 Score=51.12 Aligned_cols=115 Identities=12% Similarity=0.153 Sum_probs=66.4
Q ss_pred CEEEEecCCCChHHHHHHHhcC------CCC--CCcEEEEEeC---ChHHHHHHHHH-----------Hhhccc------
Q 041272 96 DTVVDATCGNGYDTLMMLKMVA------DES--SAGCVYGLDI---QSEALKSTSSL-----------LDKTTS------ 147 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~------~~~--p~~~v~giD~---s~~~i~~a~~~-----------~~~~~~------ 147 (267)
-+|||+|-|+|...+...+... +.. ...+++++|. +++.+..+-.. ......
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 147 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence 4899999999998877665431 000 1246899999 66666644332 111110
Q ss_pred ccc----ccceEEEecChhhhhhcCC--CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 148 KAE----KGLVKLFNMCHSRMEEIVP--KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 148 ~~~----~~~v~~~~~~~~~l~~~~~--~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
+.. ...+++..+|..+....+. ....+|+++.|. +-|....... ..++++.+.++++|||.+.
T Consensus 148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~-f~p~~np~~w-----~~~~~~~l~~~~~~g~~~~ 216 (676)
T 3ps9_A 148 RLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG-FAPAKNPDMW-----TQNLFNAMARLARPGGTLA 216 (676)
T ss_dssp EEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC-SCGGGCGGGS-----CHHHHHHHHHHEEEEEEEE
T ss_pred EEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC-CCCcCChhhh-----hHHHHHHHHHHhCCCCEEE
Confidence 000 1234456666665443332 134799999983 1111111100 2578999999999999984
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.017 Score=50.65 Aligned_cols=94 Identities=9% Similarity=0.088 Sum_probs=60.4
Q ss_pred CCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCCh---HHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 95 GDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQS---EALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 95 ~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~---~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
|++||-+|+|. |..+..+++..| ++|+++|.++ +..+.+++ .+ ...+. .......+.+ . .
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~G-----a~Vi~~~~~~~~~~~~~~~~~----~g----a~~v~-~~~~~~~~~~-~-~ 244 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYG-----LEVWMANRREPTEVEQTVIEE----TK----TNYYN-SSNGYDKLKD-S-V 244 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHT-----CEEEEEESSCCCHHHHHHHHH----HT----CEEEE-CTTCSHHHHH-H-H
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-----CEEEEEeCCccchHHHHHHHH----hC----Cceec-hHHHHHHHHH-h-C
Confidence 99999999855 677777777663 6999999998 77776654 22 11111 0000111222 1 1
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHH-HHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMAL-EAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l-~~~~~~LkpgG~l~i~~~ 220 (267)
..+|+++.+.+. ...+ +.+.+.|++||++++...
T Consensus 245 -~~~d~vid~~g~---------------~~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 245 -GKFDVIIDATGA---------------DVNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp -CCEEEEEECCCC---------------CTHHHHHHGGGEEEEEEEEECSC
T ss_pred -CCCCEEEECCCC---------------hHHHHHHHHHHHhcCCEEEEEec
Confidence 359999888542 1356 888999999999876543
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.11 Score=47.46 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=53.0
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV------ 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~------ 168 (267)
..+++|+.||.|.++..+.+. | ...|.++|+++.+++.-+.|.... ....++.+|..++....
T Consensus 88 ~~~viDLFaG~GGlslG~~~a-G----~~~v~avE~d~~A~~ty~~N~~~~------p~~~~~~~DI~~i~~~~~~~~~~ 156 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI-G----GQCVFTSEWNKHAVRTYKANHYCD------PATHHFNEDIRDITLSHQEGVSD 156 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT-T----EEEEEEECCCHHHHHHHHHHSCCC------TTTCEEESCTHHHHCTTCTTSCH
T ss_pred cceEEEecCCccHHHHHHHHC-C----CEEEEEEeCCHHHHHHHHHhcccC------CCcceeccchhhhhhccccccch
Confidence 358999999999999998865 2 235889999999888777765221 22334555555443100
Q ss_pred --------CCCCcEEEEEEeCCCCCCC
Q 041272 169 --------PKSTAVRLVAFNLGYLPGG 187 (267)
Q Consensus 169 --------~~~~~~d~ii~~~~~lp~~ 187 (267)
.....+|+++..++.=+++
T Consensus 157 ~~~~~~i~~~~~~~Dvl~gGpPCQ~FS 183 (482)
T 3me5_A 157 EAAAEHIRQHIPEHDVLLAGFPCQPFS 183 (482)
T ss_dssp HHHHHHHHHHSCCCSEEEEECCCCCC-
T ss_pred hhHHhhhhhcCCCCCEEEecCCCcchh
Confidence 0012589999998764443
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.034 Score=50.09 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=64.5
Q ss_pred hhcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec---C----
Q 041272 90 HVVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM---C---- 160 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~---~---- 160 (267)
..+++|++||=.|+ |. |..+..+|+.. +++|++++.+++.++.+++ .+ ... ++.. +
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~-----Ga~vi~~~~~~~~~~~~~~----lG----a~~--~i~~~~~~~~~~ 280 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG-----GGIPVAVVSSAQKEAAVRA----LG----CDL--VINRAELGITDD 280 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHH----TT----CCC--EEEHHHHTCCTT
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHh----cC----CCE--EEeccccccccc
Confidence 35778999999997 44 78888888876 4689999999998888754 22 111 1110 0
Q ss_pred ---------------hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 161 ---------------HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 161 ---------------~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+.+.+.. ...+|+++-+.+. ..++.+.+.|++||++++..
T Consensus 281 ~~~~~~~~~~~~~~~~~~v~~~~--g~g~Dvvid~~G~----------------~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 281 IADDPRRVVETGRKLAKLVVEKA--GREPDIVFEHTGR----------------VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHH--SSCCSEEEECSCH----------------HHHHHHHHHSCTTCEEEESC
T ss_pred ccccccccchhhhHHHHHHHHHh--CCCceEEEECCCc----------------hHHHHHHHHHhcCCEEEEEe
Confidence 11122222 2357888877431 46788889999999997753
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.053 Score=47.56 Aligned_cols=94 Identities=11% Similarity=0.018 Sum_probs=62.2
Q ss_pred CCCCEEEEecCC--CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh----hh
Q 041272 93 RKGDTVVDATCG--NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM----EE 166 (267)
Q Consensus 93 ~~~~~VLDlGcG--~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l----~~ 166 (267)
++|++||=+|++ .|..+..+|+..| ++|+++. +++..+.+++ .| --.++.....++ .+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G-----a~Vi~~~-~~~~~~~~~~----lG------a~~vi~~~~~~~~~~v~~ 226 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSG-----YIPIATC-SPHNFDLAKS----RG------AEEVFDYRAPNLAQTIRT 226 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTT-----CEEEEEE-CGGGHHHHHH----TT------CSEEEETTSTTHHHHHHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCC-----CEEEEEe-CHHHHHHHHH----cC------CcEEEECCCchHHHHHHH
Confidence 788999999983 4889999998864 6899885 8887777765 22 112222222222 22
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcc-cCCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL-IPGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~L-kpgG~l~i~~ 219 (267)
... ..+|+++-..+. ...++.+.+.| ++||+++...
T Consensus 227 ~t~--g~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 227 YTK--NNLRYALDCITN---------------VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp HTT--TCCCEEEESSCS---------------HHHHHHHHHHSCTTCEEEEESS
T ss_pred Hcc--CCccEEEECCCc---------------hHHHHHHHHHhhcCCCEEEEEe
Confidence 222 248888877432 35788888899 6999997643
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.17 Score=43.00 Aligned_cols=81 Identities=9% Similarity=-0.079 Sum_probs=53.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcE-EEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-CCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI-VPK 170 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~~ 170 (267)
+.+.+|+|+.||.|.++..+.+. |- ... |.++|+++.+++.-+.|.. ...++.+|..++... +++
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~---~~~~v~a~E~d~~a~~ty~~N~~---------~~~~~~~DI~~i~~~~i~~ 80 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GI---QVDRYIASEVCEDSITVGMVRHQ---------GKIMYVGDVRSVTQKHIQE 80 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TB---CEEEEEEECCCHHHHHHHHHHTT---------TCEEEECCGGGCCHHHHHH
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CC---ccceEEEEECCHHHHHHHHHhCC---------CCceeCCChHHccHHHhcc
Confidence 35569999999999999988875 21 122 6899999998887776543 223444555444221 111
Q ss_pred CCcEEEEEEeCCCCCC
Q 041272 171 STAVRLVAFNLGYLPG 186 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~ 186 (267)
..++|+++..++.=++
T Consensus 81 ~~~~Dll~ggpPCQ~f 96 (295)
T 2qrv_A 81 WGPFDLVIGGSPCNDL 96 (295)
T ss_dssp TCCCSEEEECCCCGGG
T ss_pred cCCcCEEEecCCCccc
Confidence 1358999999877444
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.072 Score=46.39 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=59.1
Q ss_pred hcCCC-CEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh---hh-
Q 041272 91 VVRKG-DTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH---SR- 163 (267)
Q Consensus 91 ~l~~~-~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~---~~- 163 (267)
.+++| ++||=.|+ |. |..+..+|+..| ++|+++..+++.++..++.+++.| ... ++.... .+
T Consensus 163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G-----a~vi~~~~~~~~~~~~~~~~~~lG----a~~--vi~~~~~~~~~~ 231 (364)
T 1gu7_A 163 KLTPGKDWFIQNGGTSAVGKYASQIGKLLN-----FNSISVIRDRPNLDEVVASLKELG----ATQ--VITEDQNNSREF 231 (364)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHT-----CEEEEEECCCTTHHHHHHHHHHHT----CSE--EEEHHHHHCGGG
T ss_pred ccCCCCcEEEECCCCcHHHHHHHHHHHHCC-----CEEEEEecCccccHHHHHHHHhcC----CeE--EEecCccchHHH
Confidence 57789 99999997 54 888899998874 688888765543221122223333 111 121111 12
Q ss_pred ---hhhcCC-CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 ---MEEIVP-KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 ---l~~~~~-~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.+... ....+|+++-..+. .... .+.+.|++||+++...
T Consensus 232 ~~~i~~~t~~~~~g~Dvvid~~G~---------------~~~~-~~~~~l~~~G~~v~~g 275 (364)
T 1gu7_A 232 GPTIKEWIKQSGGEAKLALNCVGG---------------KSST-GIARKLNNNGLMLTYG 275 (364)
T ss_dssp HHHHHHHHHHHTCCEEEEEESSCH---------------HHHH-HHHHTSCTTCEEEECC
T ss_pred HHHHHHHhhccCCCceEEEECCCc---------------hhHH-HHHHHhccCCEEEEec
Confidence 111110 12258999877431 2233 6789999999997654
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.054 Score=47.16 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=55.4
Q ss_pred hcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEE-EeCChH---HHHHHHHHHhhccccccccceEEEecC---h
Q 041272 91 VVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYG-LDIQSE---ALKSTSSLLDKTTSKAEKGLVKLFNMC---H 161 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~g-iD~s~~---~i~~a~~~~~~~~~~~~~~~v~~~~~~---~ 161 (267)
.+++|++||=.|+ |. |..+..+|+..| +++++ ++.++. ..+.++ +.| .. .++... .
T Consensus 164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~G-----a~vi~~~~~~~~~~~~~~~~~----~lG----a~--~vi~~~~~~~ 228 (357)
T 1zsy_A 164 QLQPGDSVIQNASNSGVGQAVIQIAAALG-----LRTINVVRDRPDIQKLSDRLK----SLG----AE--HVITEEELRR 228 (357)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT-----CEEEEEECCCSCHHHHHHHHH----HTT----CS--EEEEHHHHHS
T ss_pred ccCCCCEEEEeCCcCHHHHHHHHHHHHcC-----CEEEEEecCccchHHHHHHHH----hcC----Cc--EEEecCcchH
Confidence 5789999999997 44 888999999874 45555 444432 234443 333 11 112211 0
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.++.+.......+|+++-..+. ....++.+.|++||+++..
T Consensus 229 ~~~~~~~~~~~~~Dvvid~~g~----------------~~~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 229 PEMKNFFKDMPQPRLALNCVGG----------------KSSTELLRQLARGGTMVTY 269 (357)
T ss_dssp GGGGGTTSSSCCCSEEEESSCH----------------HHHHHHHTTSCTTCEEEEC
T ss_pred HHHHHHHhCCCCceEEEECCCc----------------HHHHHHHHhhCCCCEEEEE
Confidence 1222222111137777766321 2234678999999999765
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.4 Score=47.52 Aligned_cols=78 Identities=9% Similarity=-0.027 Sum_probs=53.8
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCc--EEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAG--CVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME------- 165 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~------- 165 (267)
..+++|+.||.|.++.-+.+. +. .|.++|+++.+++.-+.|. ....++.+|..++.
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A------G~~~vv~avEid~~A~~ty~~N~---------p~~~~~~~DI~~l~~~~~~~d 604 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA------GISDTLWAIEMWDPAAQAFRLNN---------PGSTVFTEDCNILLKLVMAGE 604 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH------TSEEEEEEECSSHHHHHHHHHHC---------TTSEEECSCHHHHHHHHHHTC
T ss_pred CCeEEEeccCccHHHHHHHHC------CCCceEEEEECCHHHHHHHHHhC---------CCCccccccHHHHhhhccchh
Confidence 348999999999999998876 33 5779999999888777654 23445555544331
Q ss_pred --h----cCCCCCcEEEEEEeCCCCCCC
Q 041272 166 --E----IVPKSTAVRLVAFNLGYLPGG 187 (267)
Q Consensus 166 --~----~~~~~~~~d~ii~~~~~lp~~ 187 (267)
. .++....+|+++..++.=+++
T Consensus 605 i~~~~~~~lp~~~~vDll~GGpPCQ~FS 632 (1002)
T 3swr_A 605 TTNSRGQRLPQKGDVEMLCGGPPCQGFS 632 (1002)
T ss_dssp SBCTTCCBCCCTTTCSEEEECCCCTTCC
T ss_pred hhhhhhhhcccCCCeeEEEEcCCCcchh
Confidence 1 122334789999998765554
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.062 Score=46.34 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=46.7
Q ss_pred cceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCcee-----echhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVI-----TTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 152 ~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+..++++|..+....++ +.++|+|+.++||-...+.... .........++++.++|||||.+++..-
T Consensus 13 ~~~~ii~gD~~~~l~~l~-~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFP-EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp SSEEEEESCHHHHGGGSC-SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCceEEeCcHHHHHhhCC-CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 467788888776554443 4589999999999543221111 1123456788999999999999988754
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.05 Score=47.20 Aligned_cols=96 Identities=9% Similarity=-0.054 Sum_probs=58.7
Q ss_pred CCC-CEEEEe-cCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 93 RKG-DTVVDA-TCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 93 ~~~-~~VLDl-GcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
+++ .+||=. |+|. |..+..+|+..| ++|+++|.+++.++.+++. + .. ..+.....++.+...
T Consensus 162 ~~g~~~vli~gg~g~vG~~a~qla~~~G-----a~Vi~~~~~~~~~~~~~~~----G----a~--~~~~~~~~~~~~~v~ 226 (349)
T 3pi7_A 162 QEGEKAFVMTAGASQLCKLIIGLAKEEG-----FRPIVTVRRDEQIALLKDI----G----AA--HVLNEKAPDFEATLR 226 (349)
T ss_dssp HHCCSEEEESSTTSHHHHHHHHHHHHHT-----CEEEEEESCGGGHHHHHHH----T----CS--EEEETTSTTHHHHHH
T ss_pred hCCCCEEEEeCCCcHHHHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHHc----C----CC--EEEECCcHHHHHHHH
Confidence 445 566654 5554 777778888764 6999999999988888652 2 11 122221122222110
Q ss_pred ---CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 ---KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
....+|+++-+.+. ..+..+.+.|++||++++..
T Consensus 227 ~~~~~~g~D~vid~~g~----------------~~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 227 EVMKAEQPRIFLDAVTG----------------PLASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp HHHHHHCCCEEEESSCH----------------HHHHHHHHHSCTTCEEEECC
T ss_pred HHhcCCCCcEEEECCCC----------------hhHHHHHhhhcCCCEEEEEe
Confidence 01247888876431 34577889999999998764
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=1.1 Score=43.27 Aligned_cols=48 Identities=19% Similarity=0.032 Sum_probs=34.9
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCC-cEEEEEeCChHHHHHHHHHH
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSA-GCVYGLDIQSEALKSTSSLL 142 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~-~~v~giD~s~~~i~~a~~~~ 142 (267)
..+|+|+-||.|.++.-+.+..+..... .-+.++|+++.+++.-+.|.
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 4589999999999998887652100000 24789999999998887774
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.1 Score=45.24 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=56.8
Q ss_pred hhcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhh
Q 041272 90 HVVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEE 166 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~ 166 (267)
..+++|++||=.|+ |. |..+..+|+..+ +.+|++++ +++..+.++ .+ ...+--...+. ..+.+
T Consensus 138 ~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g----~~~V~~~~-~~~~~~~~~-----~g----a~~~~~~~~~~~~~~~~ 203 (349)
T 4a27_A 138 ANLREGMSVLVHSAGGGVGQAVAQLCSTVP----NVTVFGTA-STFKHEAIK-----DS----VTHLFDRNADYVQEVKR 203 (349)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHTTST----TCEEEEEE-CGGGHHHHG-----GG----SSEEEETTSCHHHHHHH
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcC----CcEEEEeC-CHHHHHHHH-----cC----CcEEEcCCccHHHHHHH
Confidence 35778999999998 43 777788887754 37899998 555555443 22 11111011111 12222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.. ...+|+++-..+- ..+..+.+.|++||++++...
T Consensus 204 ~~--~~g~Dvv~d~~g~----------------~~~~~~~~~l~~~G~~v~~G~ 239 (349)
T 4a27_A 204 IS--AEGVDIVLDCLCG----------------DNTGKGLSLLKPLGTYILYGS 239 (349)
T ss_dssp HC--TTCEEEEEEECC-----------------------CTTEEEEEEEEEEC-
T ss_pred hc--CCCceEEEECCCc----------------hhHHHHHHHhhcCCEEEEECC
Confidence 22 2369999877432 234778899999999987643
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.18 Score=42.05 Aligned_cols=118 Identities=15% Similarity=0.067 Sum_probs=69.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC------------hHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ------------SEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s------------~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
.+++||=-|++. .++..+++.+-. -+.+|+.+|.+ .+.++.+.+.+...+ .++.++..|.
T Consensus 9 ~gk~vlVTGas~-gIG~~ia~~l~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~ 80 (287)
T 3pxx_A 9 QDKVVLVTGGAR-GQGRSHAVKLAE--EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-----RKAYTAEVDV 80 (287)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHH--TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-----SCEEEEECCT
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHH--CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC-----CceEEEEccC
Confidence 366788777665 455555544322 15799999987 666666666665543 5677777666
Q ss_pred hhhhhc---C----CCCCcEEEEEEeCCCCCCCCCcee--------echhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 162 SRMEEI---V----PKSTAVRLVAFNLGYLPGGDKSVI--------TTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 162 ~~l~~~---~----~~~~~~d~ii~~~~~lp~~d~~~~--------~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+.... . .....+|+++.|.+..+.....-. ........+.+.+.+.++.+|.++.+.
T Consensus 81 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 81 RDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 554321 1 111268999999887544311000 011223445677778888888876543
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.12 Score=45.43 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=58.5
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
++.+|+=+|+|. |..+..+++.+ +.+|+++|.+++.++.+++.... .+........++.+...
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~-----Ga~V~~~d~~~~~l~~~~~~~g~--------~~~~~~~~~~~l~~~l~--- 230 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM-----GATVTVLDINIDKLRQLDAEFCG--------RIHTRYSSAYELEGAVK--- 230 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHHTTT--------SSEEEECCHHHHHHHHH---
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-----CCEEEEEeCCHHHHHHHHHhcCC--------eeEeccCCHHHHHHHHc---
Confidence 478999999965 55555555554 35899999999888777653321 11111112233333321
Q ss_pred cEEEEEEeCCCCCCC-CCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGG-DKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~-d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..|+++...+. |.. ... -+.+++.+.+||||+++-+.
T Consensus 231 ~aDvVi~~~~~-p~~~t~~---------li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 231 RADLVIGAVLV-PGAKAPK---------LVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp HCSEEEECCCC-TTSCCCC---------CBCHHHHTTSCTTCEEEEGG
T ss_pred CCCEEEECCCc-CCCCCcc---------eecHHHHhcCCCCcEEEEEe
Confidence 46888876432 211 101 12356677889999886443
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.5 Score=34.99 Aligned_cols=99 Identities=8% Similarity=-0.056 Sum_probs=54.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC-CCCc
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP-KSTA 173 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-~~~~ 173 (267)
.++|+=+||| .++..+++.+.. -+.+|+++|.+++.++.+++ . .+.++.++..+...+.. .-..
T Consensus 7 ~~~viIiG~G--~~G~~la~~L~~--~g~~v~vid~~~~~~~~~~~----~-------g~~~i~gd~~~~~~l~~a~i~~ 71 (140)
T 3fwz_A 7 CNHALLVGYG--RVGSLLGEKLLA--SDIPLVVIETSRTRVDELRE----R-------GVRAVLGNAANEEIMQLAHLEC 71 (140)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHH----T-------TCEEEESCTTSHHHHHHTTGGG
T ss_pred CCCEEEECcC--HHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH----c-------CCCEEECCCCCHHHHHhcCccc
Confidence 4578888875 555555554422 14689999999998887764 1 24455555543322110 0124
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.|.++...+. +.....+-...+.+.|+..++....
T Consensus 72 ad~vi~~~~~------------~~~n~~~~~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 72 AKWLILTIPN------------GYEAGEIVASARAKNPDIEIIARAH 106 (140)
T ss_dssp CSEEEECCSC------------HHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred CCEEEEECCC------------hHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 6777766321 1111223334566688887655443
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.27 Score=41.44 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=67.1
Q ss_pred CCCEEEEecCCCC-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C-
Q 041272 94 KGDTVVDATCGNG-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~- 168 (267)
.+++||=.|.++| .++..+++.+-. -+.+|+.++.++...+.+++..... .++.++..|..+.... .
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~ 101 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAARE--AGAELAFTYQGDALKKRVEPLAEEL------GAFVAGHCDVADAASIDAVFE 101 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHH--TTCEEEEEECSHHHHHHHHHHHHHH------TCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHHHHHhc------CCceEEECCCCCHHHHHHHHH
Confidence 4678998887743 344444433211 1578999999976655555544442 3566666666544321 1
Q ss_pred ---CCCCcEEEEEEeCCCCCC---CCCceeech-----------hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 ---PKSTAVRLVAFNLGYLPG---GDKSVITTS-----------ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~lp~---~d~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.....+|+++.|.+.... ......... .....+.+.+.+.++.+|.++.+.-
T Consensus 102 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 102 TLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp HHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 112368999999887531 000001111 1223456677777888888876543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.64 E-value=0.25 Score=40.93 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=41.6
Q ss_pred eEEEecChhhhhhcCCCCCcEEEEEEeCCCCCC-CCCcee-e---chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPG-GDKSVI-T---TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 154 v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~-~d~~~~-~---~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..++++|..+....++ +.++|+|+.++||--. .+..-. . ........++++.++|+|||.+++..
T Consensus 5 ~~l~~gD~~~~l~~l~-~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVE-NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSEEECCHHHHHHHSC-TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeEEechHHHHHHhcc-ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3466777665544443 3489999999998433 111100 0 11234677888899999999998764
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.21 Score=41.04 Aligned_cols=119 Identities=11% Similarity=-0.003 Sum_probs=69.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---CC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---VP- 169 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~~- 169 (267)
.+.+||=.| |+|.++..+++.+-.. .+.+|+.++.+++..+...+.+...+ .++.++..|..+.... ..
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~-~g~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 75 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRL-FSGDVVLTARDVTRGQAAVQQLQAEG-----LSPRFHQLDIDDLQSIRALRDF 75 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHH-SSSEEEEEESSHHHHHHHHHHHHHTT-----CCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHh-cCCeEEEEeCChHHHHHHHHHHHhcC-----CeeEEEECCCCCHHHHHHHHHH
Confidence 356777666 5677777776654210 05799999999887777666665533 4567776666544321 11
Q ss_pred ---CCCcEEEEEEeCCCCCCCCCcee--e--------chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 ---KSTAVRLVAFNLGYLPGGDKSVI--T--------TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~lp~~d~~~~--~--------~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
....+|+++.+.+.......... . .......+++.+.+.++++|.++.+.
T Consensus 76 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 76 LRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp HHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 11268999999876443211000 0 11122345666777777778776653
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.42 Score=41.10 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=65.1
Q ss_pred CCEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc--------------ccccceEEEe
Q 041272 95 GDTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK--------------AEKGLVKLFN 158 (267)
Q Consensus 95 ~~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~--------------~~~~~v~~~~ 158 (267)
..+|-=||+|+ | .++..+|.. +.+|+.+|++++.++.+.+++++.-.. ....+++..
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~------G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~- 78 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASG------GFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC- 78 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-
T ss_pred CCeEEEECCcHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-
Confidence 45899999987 3 445555554 578999999999999888776542100 001223332
Q ss_pred cChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 159 ~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
.++.+.. ...|+|+-. +....+-+.++++++-++++|+-+|.-
T Consensus 79 ---~~l~~a~---~~ad~ViEa----------v~E~l~iK~~lf~~l~~~~~~~aIlaS 121 (319)
T 3ado_A 79 ---TNLAEAV---EGVVHIQEC----------VPENLDLKRKIFAQLDSIVDDRVVLSS 121 (319)
T ss_dssp ---CCHHHHT---TTEEEEEEC----------CCSCHHHHHHHHHHHHTTCCSSSEEEE
T ss_pred ---cchHhHh---ccCcEEeec----------cccHHHHHHHHHHHHHHHhhhcceeeh
Confidence 1222222 258888887 344567778999999999999988843
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.35 E-value=1.2 Score=34.25 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=28.2
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCC-CcEEEEEeCChHHHHHHHH
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESS-AGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p-~~~v~giD~s~~~i~~a~~ 140 (267)
+++|+=+|+| .++..+++.+.. . +.+|+++|.+++.++.+++
T Consensus 39 ~~~v~IiG~G--~~G~~~a~~L~~--~~g~~V~vid~~~~~~~~~~~ 81 (183)
T 3c85_A 39 HAQVLILGMG--RIGTGAYDELRA--RYGKISLGIEIREEAAQQHRS 81 (183)
T ss_dssp TCSEEEECCS--HHHHHHHHHHHH--HHCSCEEEEESCHHHHHHHHH
T ss_pred CCcEEEECCC--HHHHHHHHHHHh--ccCCeEEEEECCHHHHHHHHH
Confidence 5689888865 555555554321 1 2579999999988776653
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.86 Score=38.18 Aligned_cols=118 Identities=14% Similarity=-0.009 Sum_probs=67.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChH-HHHHHHHHHhhccccccccceEEEecChhhhhhc---C-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE-ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~-~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~- 168 (267)
.+++||=.|.+. .++..+++.+-. .+.+|+.+|.+++ ..+...+.++..+ .++.++..|..+.... .
T Consensus 46 ~gk~vlVTGas~-GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~ 117 (291)
T 3ijr_A 46 KGKNVLITGGDS-GIGRAVSIAFAK--EGANIAIAYLDEEGDANETKQYVEKEG-----VKCVLLPGDLSDEQHCKDIVQ 117 (291)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHH--TTCEEEEEESSCHHHHHHHHHHHHTTT-----CCEEEEESCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHH--CCCEEEEEeCCchHHHHHHHHHHHhcC-----CcEEEEECCCCCHHHHHHHHH
Confidence 467888888654 455555554322 1579999998875 3444444444433 5677777766654321 1
Q ss_pred ---CCCCcEEEEEEeCCCCCCCCCceeec-----------hhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 ---PKSTAVRLVAFNLGYLPGGDKSVITT-----------SETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~lp~~d~~~~~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.....+|+++.+.+.......-.... ......+.+.+.+.++++|.++.+.
T Consensus 118 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 118 ETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 11135899999977643211100011 1223456677788888888876543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=93.05 E-value=0.29 Score=42.76 Aligned_cols=101 Identities=21% Similarity=0.180 Sum_probs=59.3
Q ss_pred CCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 95 GDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 95 ~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
+.+||=+|+|. |..+..++... +++|+.+|.+++.++.+++.... .+..+..+..++.+... .
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~-----Ga~V~v~dr~~~r~~~~~~~~~~--------~~~~~~~~~~~~~~~~~---~ 230 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGL-----GAQVQIFDINVERLSYLETLFGS--------RVELLYSNSAEIETAVA---E 230 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHHHGG--------GSEEEECCHHHHHHHHH---T
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CCEEEEEeCCHHHHHHHHHhhCc--------eeEeeeCCHHHHHHHHc---C
Confidence 47999999976 56666666665 35999999999888877654322 22222222233333221 4
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|+++...+. +..... .-+.++..+.++|||+++-+.+
T Consensus 231 ~DvVI~~~~~-~~~~~~--------~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 231 ADLLIGAVLV-PGRRAP--------ILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp CSEEEECCCC-TTSSCC--------CCBCHHHHTTSCTTCEEEETTC
T ss_pred CCEEEECCCc-CCCCCC--------eecCHHHHhhCCCCCEEEEEec
Confidence 7888876543 111000 0013456678899998865544
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.27 Score=41.28 Aligned_cols=85 Identities=9% Similarity=-0.046 Sum_probs=55.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh-hh---c--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM-EE---I-- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l-~~---~-- 167 (267)
.+.+||=.|++ |.++..+++.+-. .+.+|+.++.+++..+.+.+.+...+ ..++.++..|..+. .. .
T Consensus 11 ~~k~vlITGas-~GIG~~~a~~L~~--~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~Dl~~~~~~v~~~~~ 83 (311)
T 3o26_A 11 KRRCAVVTGGN-KGIGFEICKQLSS--NGIMVVLTCRDVTKGHEAVEKLKNSN----HENVVFHQLDVTDPIATMSSLAD 83 (311)
T ss_dssp -CCEEEESSCS-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTTT----CCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEecCC-chHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC----CCceEEEEccCCCcHHHHHHHHH
Confidence 46678877765 5566666654422 15799999999998888777776644 35677877666554 21 1
Q ss_pred --CCCCCcEEEEEEeCCCCC
Q 041272 168 --VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp 185 (267)
......+|+++.|.+...
T Consensus 84 ~~~~~~g~iD~lv~nAg~~~ 103 (311)
T 3o26_A 84 FIKTHFGKLDILVNNAGVAG 103 (311)
T ss_dssp HHHHHHSSCCEEEECCCCCS
T ss_pred HHHHhCCCCCEEEECCcccc
Confidence 111136899999988753
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.92 E-value=0.25 Score=40.67 Aligned_cols=84 Identities=13% Similarity=-0.029 Sum_probs=52.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeC-ChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI-QSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IVP 169 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~-s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~~ 169 (267)
.+++||=.|+ +|.++..+++.+-. .+.+|+.++. +++..+...+.++..+ .++.++..|..+... ...
T Consensus 20 ~~k~vlItGa-sggiG~~la~~l~~--~G~~v~~~~r~~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~ 91 (274)
T 1ja9_A 20 AGKVALTTGA-GRGIGRGIAIELGR--RGASVVVNYGSSSKAAEEVVAELKKLG-----AQGVAIQADISKPSEVVALFD 91 (274)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHH--TTCEEEEEESSCHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH--CCCEEEEEcCCchHHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHHHH
Confidence 3568887774 56677777665432 1578999998 7777666655555433 456777666554332 111
Q ss_pred ----CCCcEEEEEEeCCCCC
Q 041272 170 ----KSTAVRLVAFNLGYLP 185 (267)
Q Consensus 170 ----~~~~~d~ii~~~~~lp 185 (267)
....+|.++.+.+...
T Consensus 92 ~~~~~~~~~d~vi~~Ag~~~ 111 (274)
T 1ja9_A 92 KAVSHFGGLDFVMSNSGMEV 111 (274)
T ss_dssp HHHHHHSCEEEEECCCCCCC
T ss_pred HHHHHcCCCCEEEECCCCCC
Confidence 0125899999887644
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.29 Score=42.87 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=56.7
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+++|+=+|+|. |..+..++... +.+|+++|.+++.++.+++.. + ..+.....+..++.+...
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~-----Ga~V~~~d~~~~~~~~~~~~~---g-----~~~~~~~~~~~~l~~~~~--- 228 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM-----GAQVTILDVNHKRLQYLDDVF---G-----GRVITLTATEANIKKSVQ--- 228 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHHT---T-----TSEEEEECCHHHHHHHHH---
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-----CCEEEEEECCHHHHHHHHHhc---C-----ceEEEecCCHHHHHHHHh---
Confidence 357999999854 44444444444 469999999998877665432 2 112222222334433321
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+|+++.+.+.-.... +.-+.+++.+.+|+||.++.+.
T Consensus 229 ~~DvVi~~~g~~~~~~---------~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 229 HADLLIGAVLVPGAKA---------PKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp HCSEEEECCC----------------CCSCHHHHTTSCTTCEEEECC
T ss_pred CCCEEEECCCCCcccc---------chhHHHHHHHhhcCCCEEEEEe
Confidence 4788887754311000 0012466778889999876543
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.94 Score=37.04 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=56.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.+.+||=.|++.| ++..+++.+-. -+.+|+.+|.+++.++.+.+.++..+ .++.++..|..+....
T Consensus 6 ~~k~vlVTGas~G-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~ 77 (252)
T 3h7a_A 6 RNATVAVIGAGDY-IGAEIAKKFAA--EGFTVFAGRRNGEKLAPLVAEIEAAG-----GRIVARSLDARNEDEVTAFLNA 77 (252)
T ss_dssp CSCEEEEECCSSH-HHHHHHHHHHH--TTCEEEEEESSGGGGHHHHHHHHHTT-----CEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEECcCCCHHHHHHHHHH
Confidence 3567887776654 55555544322 15799999999998888888776644 5677777666554321
Q ss_pred -CCCCCcEEEEEEeCCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~ 186 (267)
... ..+|+++.|.+....
T Consensus 78 ~~~~-g~id~lv~nAg~~~~ 96 (252)
T 3h7a_A 78 ADAH-APLEVTIFNVGANVN 96 (252)
T ss_dssp HHHH-SCEEEEEECCCCCCC
T ss_pred HHhh-CCceEEEECCCcCCC
Confidence 111 469999999887543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.45 Score=41.93 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=34.9
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
++.+|+=+|+|. |..+..+++.+| ++|+++|.+++.++.+++
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG-----a~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG-----AKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT-----CEEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHH
Confidence 567999999997 777777777774 689999999998887765
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=92.48 E-value=0.63 Score=38.33 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=68.6
Q ss_pred CCCEEEEecCCCC-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-----
Q 041272 94 KGDTVVDATCGNG-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI----- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~----- 167 (267)
.|+++|=-|.+++ .++..+|+.+-. -+++|+.+|.+++..+.+.+.+++.+ ..++.++..|..+..+.
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~--~Ga~Vvi~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~ 78 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQ--LGAKLVFTYRKERSRKELEKLLEQLN----QPEAHLYQIDVQSDEEVINGFE 78 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHHHGGGT----CSSCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC----CCcEEEEEccCCCHHHHHHHHH
Confidence 4778888886431 233333332211 06899999999999888888777654 34667776665543221
Q ss_pred --CCCCCcEEEEEEeCCCCCCCCC--cee-echhh-----------HHHHHHHHHhcccCCcEEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGDK--SVI-TTSET-----------TKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d~--~~~-~~~~~-----------~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...-..+|+++.|.+..+..+. .+. ...+. .....+.+...++.||.++.+.
T Consensus 79 ~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis 146 (256)
T 4fs3_A 79 QIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT 146 (256)
T ss_dssp HHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred HHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence 1112368999999876432111 111 11111 1223345567778899887654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=92.45 E-value=0.35 Score=40.76 Aligned_cols=119 Identities=16% Similarity=0.094 Sum_probs=67.8
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC-
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~- 168 (267)
.+++||=.|.++ ..++..+++.+-. -+.+|+.+|.+++..+..++..+..+ ++.++..|..+... ..
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~Dv~d~~~v~~~~~ 100 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCA--QGAEVALTYLSETFKKRVDPLAESLG------VKLTVPCDVSDAESVDNMFK 100 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHHHHHHT------CCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHH--CCCEEEEEeCChHHHHHHHHHHHhcC------CeEEEEcCCCCHHHHHHHHH
Confidence 467888888764 3445444443321 15799999999876666655555433 35666666554332 11
Q ss_pred ---CCCCcEEEEEEeCCCCCCC---CCceeech-----------hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 ---PKSTAVRLVAFNLGYLPGG---DKSVITTS-----------ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~lp~~---d~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.....+|+++.|.+..... ........ .....+.+.+.+.++.+|.++.+.-
T Consensus 101 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 101 VLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp HHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 1113689999998765320 00001111 1224456677778888888876543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=92.42 E-value=0.69 Score=38.32 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=56.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.|+++|=-|.+.| ++..+|+.+-. -+++|+.+|.+++.++.+.+.++..+ .++.++..|..+..+.
T Consensus 6 ~gKvalVTGas~G-IG~aiA~~la~--~Ga~Vv~~~~~~~~~~~~~~~i~~~g-----~~~~~~~~Dvt~~~~v~~~~~~ 77 (254)
T 4fn4_A 6 KNKVVIVTGAGSG-IGRAIAKKFAL--NDSIVVAVELLEDRLNQIVQELRGMG-----KEVLGVKADVSKKKDVEEFVRR 77 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--cCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 3667787786665 44444443321 16899999999999998888887755 5677777666544331
Q ss_pred -CCCCCcEEEEEEeCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp 185 (267)
...-...|+++.|.+..+
T Consensus 78 ~~~~~G~iDiLVNNAGi~~ 96 (254)
T 4fn4_A 78 TFETYSRIDVLCNNAGIMD 96 (254)
T ss_dssp HHHHHSCCCEEEECCCCCC
T ss_pred HHHHcCCCCEEEECCcccC
Confidence 111246899999988643
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=1.3 Score=36.34 Aligned_cols=121 Identities=13% Similarity=0.128 Sum_probs=68.6
Q ss_pred CCCEEEEecCCCC-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C-
Q 041272 94 KGDTVVDATCGNG-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~- 168 (267)
.+.+||=.|++.| .++..+++.+-. .+.+|+.++.++...+.+++.....+ ..++.++..|..+.... .
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~ 79 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHE--AGARLIFTYAGERLEKSVHELAGTLD----RNDSIILPCDVTNDAEIETCFA 79 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHHHHTSS----SCCCEEEECCCSSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHH--CCCEEEEecCchHHHHHHHHHHHhcC----CCCceEEeCCCCCHHHHHHHHH
Confidence 3668888887632 244444433321 15799999999877666666555543 23677776665543221 1
Q ss_pred ---CCCCcEEEEEEeCCCCCCC---CCceeechhh-----------HHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 ---PKSTAVRLVAFNLGYLPGG---DKSVITTSET-----------TKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~lp~~---d~~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.....+|.++.+.+..... ........+. ...+++.+...++++|.++.+.-
T Consensus 80 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 80 SIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 1112589999998765411 1011111111 23456677788888888876653
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.85 Score=37.46 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=67.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEE-eCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL-DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~gi-D~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~- 168 (267)
.+++||=-|++.| ++..+++.+-. -+.+|+.+ +.+++..+.+.+.++..+ .++.++..|..+.... .
T Consensus 7 ~~k~vlVTGas~G-IG~aia~~la~--~G~~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~ 78 (259)
T 3edm_A 7 TNRTIVVAGAGRD-IGRACAIRFAQ--EGANVVLTYNGAAEGAATAVAEIEKLG-----RSALAIKADLTNAAEVEAAIS 78 (259)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEECSSCHHHHHHHHHHHTTT-----SCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHH--CCCEEEEEcCCCHHHHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHH
Confidence 3668888886654 55555544321 15788888 777777777766666544 4677777666554321 1
Q ss_pred ---CCCCcEEEEEEeCCCC-CCCCCceeec-----------hhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 ---PKSTAVRLVAFNLGYL-PGGDKSVITT-----------SETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~l-p~~d~~~~~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.....+|+++.|.+.. +.... .... ......+.+.+.+.++++|.++.+.
T Consensus 79 ~~~~~~g~id~lv~nAg~~~~~~~~-~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 79 AAADKFGEIHGLVHVAGGLIARKTI-AEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp HHHHHHCSEEEEEECCCCCCCCCCT-TTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHhCCCCEEEECCCccCCCCCh-hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 1113689999998754 22110 0111 1222445666777777778776553
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.84 Score=37.45 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=54.5
Q ss_pred CCCEEEEecC-CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C-
Q 041272 94 KGDTVVDATC-GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V- 168 (267)
Q Consensus 94 ~~~~VLDlGc-G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~- 168 (267)
.+++||=.|. |.| ++..+++.+-. -+.+|+.+|.+++.++.+.+.++..+ ..++.++..|..+.... .
T Consensus 21 ~~k~vlITGasg~G-IG~~~a~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~Dl~~~~~v~~~~~ 93 (266)
T 3o38_A 21 KGKVVLVTAAAGTG-IGSTTARRALL--EGADVVISDYHERRLGETRDQLADLG----LGRVEAVVCDVTSTEAVDALIT 93 (266)
T ss_dssp TTCEEEESSCSSSS-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTTC----SSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCc-hHHHHHHHHHH--CCCEEEEecCCHHHHHHHHHHHHhcC----CCceEEEEeCCCCHHHHHHHHH
Confidence 4678888887 555 33333332211 15799999999998888877775543 35788887776654331 1
Q ss_pred ---CCCCcEEEEEEeCCCCCC
Q 041272 169 ---PKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~lp~ 186 (267)
.....+|+++.+.+....
T Consensus 94 ~~~~~~g~id~li~~Ag~~~~ 114 (266)
T 3o38_A 94 QTVEKAGRLDVLVNNAGLGGQ 114 (266)
T ss_dssp HHHHHHSCCCEEEECCCCCCC
T ss_pred HHHHHhCCCcEEEECCCcCCC
Confidence 111258999999886443
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=2.3 Score=43.50 Aligned_cols=80 Identities=9% Similarity=-0.012 Sum_probs=53.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh--------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-------- 166 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-------- 166 (267)
..+++|+.||.|.++.-+.+. |- ...|.++|+++.+++.-+.|.. ...++.++..++..
T Consensus 851 ~l~viDLFsG~GGlslGfe~A-G~---~~vv~avEid~~A~~ty~~N~p---------~~~~~~~DI~~l~~~~~~gdi~ 917 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQA-GI---SETLWAIEMWDPAAQAFRLNNP---------GTTVFTEDCNVLLKLVMAGEVT 917 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHHT-TS---EEEEEEECCSHHHHHHHHHHCT---------TSEEECSCHHHHHHHHTTTCSB
T ss_pred CceEEecccCccHHHHHHHHC-CC---CceEEEEECCHHHHHHHHHhCC---------CCcEeeccHHHHhHhhhccchh
Confidence 458999999999999998765 10 0247899999998887776542 23344444443321
Q ss_pred -----cCCCCCcEEEEEEeCCCCCCC
Q 041272 167 -----IVPKSTAVRLVAFNLGYLPGG 187 (267)
Q Consensus 167 -----~~~~~~~~d~ii~~~~~lp~~ 187 (267)
.++....+|+++..++.=+++
T Consensus 918 ~~~~~~lp~~~~vDvl~GGpPCQ~FS 943 (1330)
T 3av4_A 918 NSLGQRLPQKGDVEMLCGGPPCQGFS 943 (1330)
T ss_dssp CSSCCBCCCTTTCSEEEECCCCTTTC
T ss_pred hhhhhhccccCccceEEecCCCcccc
Confidence 122234689999998765554
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.11 E-value=1.1 Score=37.52 Aligned_cols=118 Identities=13% Similarity=-0.066 Sum_probs=67.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC--hHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ--SEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s--~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~ 168 (267)
.+++||=.|.+ |.++..+++.+-. -+.+|+.+|.+ +...+...+.++..+ .++.++..|..+.... .
T Consensus 48 ~~k~vlVTGas-~GIG~aia~~la~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~ 119 (294)
T 3r3s_A 48 KDRKALVTGGD-SGIGRAAAIAYAR--EGADVAINYLPAEEEDAQQVKALIEECG-----RKAVLLPGDLSDESFARSLV 119 (294)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH--TTCEEEEECCGGGHHHHHHHHHHHHHTT-----CCEEECCCCTTSHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH--CCCEEEEEeCCcchhHHHHHHHHHHHcC-----CcEEEEEecCCCHHHHHHHH
Confidence 46688888865 5556555554322 15789999987 334555555554433 5677777666553321 1
Q ss_pred ----CCCCcEEEEEEeCCCCCCCCCceeec-----------hhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 ----PKSTAVRLVAFNLGYLPGGDKSVITT-----------SETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ----~~~~~~d~ii~~~~~lp~~d~~~~~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.....+|+++.+.+.......-.... ......+.+.+...++++|.++.+.
T Consensus 120 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 120 HKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp HHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 11136899999987643211100111 1222456677778888888877654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=92.05 E-value=0.75 Score=37.74 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=67.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+++||=.|++. .++..+++.+-. .+.+|+.+|.+++.++...+.+ + .++.++..|..+.... .
T Consensus 7 ~gk~~lVTGas~-gIG~a~a~~l~~--~G~~V~~~~r~~~~~~~~~~~~---~-----~~~~~~~~Dv~~~~~v~~~~~~ 75 (255)
T 4eso_A 7 QGKKAIVIGGTH-GMGLATVRRLVE--GGAEVLLTGRNESNIARIREEF---G-----PRVHALRSDIADLNEIAVLGAA 75 (255)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHH---G-----GGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHh---C-----CcceEEEccCCCHHHHHHHHHH
Confidence 466888888654 555555554322 1579999999998777665543 2 3566776666554321 1
Q ss_pred --CCCCcEEEEEEeCCCCCCCCCceeechh-----------hHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 --PKSTAVRLVAFNLGYLPGGDKSVITTSE-----------TTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp~~d~~~~~~~~-----------~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.....+|+++.|.+........ ....+ ....+.+.+...++++|.++.+.
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~-~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 76 AGQTLGAIDLLHINAGVSELEPFD-QVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp HHHHHSSEEEEEECCCCCCCBCGG-GCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHhCCCCEEEECCCCCCCCChh-hCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 1113689999998765432110 01111 12345566777777888876653
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=91.98 E-value=1.3 Score=36.38 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=54.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+.+||=.|++ |.++..+++.+-. .+.+|+.++.+++.++...+.+...+ .++.++..|..+.... .
T Consensus 28 ~~k~vlITGas-~gIG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~ 99 (262)
T 3rkr_A 28 SGQVAVVTGAS-RGIGAAIARKLGS--LGARVVLTARDVEKLRAVEREIVAAG-----GEAESHACDLSHSDAIAAFATG 99 (262)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHhC-----CceeEEEecCCCHHHHHHHHHH
Confidence 46688887765 5566666654422 15799999999998888877776644 5677777666544331 1
Q ss_pred --CCCCcEEEEEEeCCC
Q 041272 169 --PKSTAVRLVAFNLGY 183 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~ 183 (267)
.....+|+++.+.+.
T Consensus 100 ~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 100 VLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHSCCSEEEECCCC
T ss_pred HHHhcCCCCEEEECCCc
Confidence 111358999999876
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=91.91 E-value=0.58 Score=39.48 Aligned_cols=84 Identities=15% Similarity=0.016 Sum_probs=55.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+.+||=.|++. .++..+++.+-. .+.+|+.+|.+++.++.+.+.+...+ .++.++..|..+.... .
T Consensus 30 ~gk~vlVTGas~-gIG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~d~~~v~~~~~~ 101 (301)
T 3tjr_A 30 DGRAAVVTGGAS-GIGLATATEFAR--RGARLVLSDVDQPALEQAVNGLRGQG-----FDAHGVVCDVRHLDEMVRLADE 101 (301)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC-----CceEEEEccCCCHHHHHHHHHH
Confidence 467888888765 455555544322 15799999999999888877776644 4677777666654332 1
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.|.+...
T Consensus 102 ~~~~~g~id~lvnnAg~~~ 120 (301)
T 3tjr_A 102 AFRLLGGVDVVFSNAGIVV 120 (301)
T ss_dssp HHHHHSSCSEEEECCCCCC
T ss_pred HHHhCCCCCEEEECCCcCC
Confidence 11126899999988754
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=91.82 E-value=1.4 Score=37.54 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=55.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+.+||=.|++.| ++..+++.+-. .+.+|++++.+++.++.+.+.+...+ ...++.++..|..+.... .
T Consensus 7 ~~k~vlVTGas~g-IG~~la~~l~~--~G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~ 80 (319)
T 3ioy_A 7 AGRTAFVTGGANG-VGIGLVRQLLN--QGCKVAIADIRQDSIDKALATLEAEG---SGPEVMGVQLDVASREGFKMAADE 80 (319)
T ss_dssp TTCEEEEETTTST-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEcCCchH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC---CCCeEEEEECCCCCHHHHHHHHHH
Confidence 3568888887655 55555544321 15799999999998888877776544 123677777666554321 1
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.|.+...
T Consensus 81 ~~~~~g~id~lv~nAg~~~ 99 (319)
T 3ioy_A 81 VEARFGPVSILCNNAGVNL 99 (319)
T ss_dssp HHHHTCCEEEEEECCCCCC
T ss_pred HHHhCCCCCEEEECCCcCC
Confidence 11236899999988643
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.63 E-value=0.43 Score=40.96 Aligned_cols=67 Identities=19% Similarity=0.112 Sum_probs=44.6
Q ss_pred ceEEE-ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCc--eeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 153 LVKLF-NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKS--VITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 153 ~v~~~-~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...++ ++|..+....++ +.++|+|+.++||--..+.. ...........+.++.++|+|||.+++...
T Consensus 38 ~~~l~i~gD~l~~L~~l~-~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLP-DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp EEEEEEECCHHHHHHTSC-TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cceEEECCcHHHHHHhCc-cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 45666 888876555544 34899999999984331100 001123456788889999999999988754
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.52 E-value=0.68 Score=41.09 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=34.9
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
++.+|+=+|+|. |..+..++..+| ++|+++|.++..++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lG-----a~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLG-----AVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-----CEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-----CEEEEEcCCHHHHHHHHH
Confidence 568999999997 777777787764 699999999988877765
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.44 E-value=1.2 Score=36.76 Aligned_cols=85 Identities=14% Similarity=0.059 Sum_probs=55.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE------- 166 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~------- 166 (267)
.|+++|=-|.+.| ++..+|+.+-. -+++|+.+|++++.++.+.+.+.+.+ .++..+..|..+...
T Consensus 8 ~gKvalVTGas~G-IG~aia~~la~--~Ga~Vvi~~~~~~~~~~~~~~l~~~g-----~~~~~~~~Dv~~~~~v~~~~~~ 79 (255)
T 4g81_D 8 TGKTALVTGSARG-LGFAYAEGLAA--AGARVILNDIRATLLAESVDTLTRKG-----YDAHGVAFDVTDELAIEAAFSK 79 (255)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHH--TTCEEEECCSCHHHHHHHHHHHHHTT-----CCEEECCCCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEeeCCCHHHHHHHHHH
Confidence 4667777676554 55555544322 16899999999999988888877755 466666665554322
Q ss_pred cCCCCCcEEEEEEeCCCCCC
Q 041272 167 IVPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~ 186 (267)
.......+|+++.|.+..+.
T Consensus 80 ~~~~~G~iDiLVNNAG~~~~ 99 (255)
T 4g81_D 80 LDAEGIHVDILINNAGIQYR 99 (255)
T ss_dssp HHHTTCCCCEEEECCCCCCC
T ss_pred HHHHCCCCcEEEECCCCCCC
Confidence 12223479999999887443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=0.46 Score=51.80 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=66.9
Q ss_pred hhcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-
Q 041272 90 HVVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE- 166 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~- 166 (267)
..+++|++||=.|. |. |..++.+|+..| ++|++++.+++..+.+++.....+ ... ++.....++.+
T Consensus 1663 a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~G-----a~Viat~~s~~k~~~l~~~~~~lg----a~~--v~~~~~~~~~~~ 1731 (2512)
T 2vz8_A 1663 GRMQPGESVLIHSGSGGVGQAAIAIALSRG-----CRVFTTVGSAEKRAYLQARFPQLD----ETC--FANSRDTSFEQH 1731 (2512)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTT-----CEEEEEESCHHHHHHHHHHCTTCC----STT--EEESSSSHHHHH
T ss_pred hcCCCCCEEEEEeCChHHHHHHHHHHHHcC-----CEEEEEeCChhhhHHHHhhcCCCC----ceE--EecCCCHHHHHH
Confidence 35789999999974 44 888889999864 699999999988888876543222 111 11111112211
Q ss_pred --cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 167 --IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 167 --~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.......+|+++-..+ ...++...+.|++||+++..
T Consensus 1732 i~~~t~g~GvDvVld~~g----------------~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A 1732 VLRHTAGKGVDLVLNSLA----------------EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp HHHTTTSCCEEEEEECCC----------------HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHhcCCCCceEEEECCC----------------chHHHHHHHhcCCCcEEEEe
Confidence 1112235898887631 26788999999999998764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=0.71 Score=34.72 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=27.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHH
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST 138 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a 138 (267)
.++++|+=+|+| .++..+++.+.. -+.+|+++|.+++.++.+
T Consensus 17 ~~~~~v~IiG~G--~iG~~la~~L~~--~g~~V~vid~~~~~~~~~ 58 (155)
T 2g1u_A 17 QKSKYIVIFGCG--RLGSLIANLASS--SGHSVVVVDKNEYAFHRL 58 (155)
T ss_dssp CCCCEEEEECCS--HHHHHHHHHHHH--TTCEEEEEESCGGGGGGS
T ss_pred cCCCcEEEECCC--HHHHHHHHHHHh--CCCeEEEEECCHHHHHHH
Confidence 457899999875 555555544321 146899999998765443
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=91.33 E-value=0.32 Score=44.42 Aligned_cols=89 Identities=10% Similarity=0.059 Sum_probs=55.2
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
...|++|+=+|+|. |.....+++.. +.+|+++|.++...+.|++ .+ ++.+ +..+ ..
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~-----Ga~Viv~d~~~~~~~~A~~----~G-------a~~~--~l~e---~l-- 327 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQ-----GARVSVTEIDPINALQAMM----EG-------FDVV--TVEE---AI-- 327 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-----TCEEEEECSCHHHHHHHHH----TT-------CEEC--CHHH---HG--
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHH----cC-------CEEe--cHHH---HH--
Confidence 56789999999876 55555566554 3699999999987766653 22 1211 1222 22
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHH-HHHHhcccCCcEEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMAL-EAAERILIPGGLISMVV 219 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l-~~~~~~LkpgG~l~i~~ 219 (267)
...|+++...+. . .++ .+..+.+|+||+++.+.
T Consensus 328 -~~aDvVi~atgt---~------------~~i~~~~l~~mk~ggilvnvG 361 (494)
T 3ce6_A 328 -GDADIVVTATGN---K------------DIIMLEHIKAMKDHAILGNIG 361 (494)
T ss_dssp -GGCSEEEECSSS---S------------CSBCHHHHHHSCTTCEEEECS
T ss_pred -hCCCEEEECCCC---H------------HHHHHHHHHhcCCCcEEEEeC
Confidence 146788776321 1 112 25667789999986544
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.46 Score=39.37 Aligned_cols=117 Identities=15% Similarity=0.067 Sum_probs=66.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEE-eCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL-DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~gi-D~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~- 168 (267)
.+.++|=-|++.| ++..+++.+-. -+.+|+.+ +.+++..+...+.++..+ .++.++..|..+.... .
T Consensus 26 ~~k~~lVTGas~G-IG~aia~~la~--~G~~Vv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~v~~~~~ 97 (267)
T 3u5t_A 26 TNKVAIVTGASRG-IGAAIAARLAS--DGFTVVINYAGKAAAAEEVAGKIEAAG-----GKALTAQADVSDPAAVRRLFA 97 (267)
T ss_dssp -CCEEEEESCSSH-HHHHHHHHHHH--HTCEEEEEESSCSHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEcCCCHHHHHHHHHHHHhcC-----CeEEEEEcCCCCHHHHHHHHH
Confidence 4678888786654 44444443311 05688877 456666666666555543 4677776666554321 1
Q ss_pred ---CCCCcEEEEEEeCCCCCCCCCceeech-----------hhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 ---PKSTAVRLVAFNLGYLPGGDKSVITTS-----------ETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~lp~~d~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.....+|+++.|.+..+..... .... .....+++.+.+.++++|.++.+.
T Consensus 98 ~~~~~~g~iD~lvnnAG~~~~~~~~-~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 98 TAEEAFGGVDVLVNNAGIMPLTTIA-ETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp HHHHHHSCEEEEEECCCCCCCCCGG-GCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHcCCCCEEEECCCCCCCCChh-hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1113699999998875443211 1111 112345667777778888877654
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.28 E-value=1.6 Score=35.91 Aligned_cols=83 Identities=13% Similarity=0.014 Sum_probs=54.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+++||=.|++.| ++..+++.+-. .+.+|+.+|.+++.++...+.+...+ .++.++..|..+.... .
T Consensus 10 ~~k~vlVTGas~g-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~ 81 (264)
T 3ucx_A 10 TDKVVVISGVGPA-LGTTLARRCAE--QGADLVLAARTVERLEDVAKQVTDTG-----RRALSVGTDITDDAQVAHLVDE 81 (264)
T ss_dssp TTCEEEEESCCTT-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCcEEEEECCCcH-HHHHHHHHHHH--CcCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHH
Confidence 4678888887665 44444443321 15799999999998888877776644 5677777666654321 1
Q ss_pred --CCCCcEEEEEEeCCCC
Q 041272 169 --PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~l 184 (267)
.....+|+++.|.+..
T Consensus 82 ~~~~~g~id~lv~nAg~~ 99 (264)
T 3ucx_A 82 TMKAYGRVDVVINNAFRV 99 (264)
T ss_dssp HHHHTSCCSEEEECCCSC
T ss_pred HHHHcCCCcEEEECCCCC
Confidence 1123689999998664
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.24 E-value=2.2 Score=31.17 Aligned_cols=72 Identities=7% Similarity=-0.074 Sum_probs=42.8
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC-CCCc
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP-KSTA 173 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-~~~~ 173 (267)
.++|+=+|+| .++..+++.+.. -+.+|+++|.+++.++.+++. .+.++.++..+...+.. .-..
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~--~g~~V~~id~~~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~~~~~~ 70 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTA--AGKKVLAVDKSKEKIELLEDE-----------GFDAVIADPTDESFYRSLDLEG 70 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHT-----------TCEEEECCTTCHHHHHHSCCTT
T ss_pred CCEEEEECCC--HHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHC-----------CCcEEECCCCCHHHHHhCCccc
Confidence 4578888884 566666655432 146899999999887776541 23455555543322110 1124
Q ss_pred EEEEEEeC
Q 041272 174 VRLVAFNL 181 (267)
Q Consensus 174 ~d~ii~~~ 181 (267)
+|.++...
T Consensus 71 ~d~vi~~~ 78 (141)
T 3llv_A 71 VSAVLITG 78 (141)
T ss_dssp CSEEEECC
T ss_pred CCEEEEec
Confidence 77777763
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=91.19 E-value=0.71 Score=38.95 Aligned_cols=41 Identities=15% Similarity=0.049 Sum_probs=30.0
Q ss_pred CEEEEecCCC-Ch-HHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHH
Q 041272 96 DTVVDATCGN-GY-DTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142 (267)
Q Consensus 96 ~~VLDlGcG~-G~-~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~ 142 (267)
.+|.=||+|. |. ++..+++. +.+|+.+|.+++.++.+++.+
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~~~~~~~~~i 58 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTEDILAKSKKGI 58 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHHH
Confidence 4789999986 43 44555544 468999999999988876543
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.14 E-value=1.6 Score=35.35 Aligned_cols=77 Identities=13% Similarity=0.033 Sum_probs=46.9
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh------cC
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE------IV 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~------~~ 168 (267)
+++||=.|+ +|.++..+++.+-. +.+|+.++.+++.++...+ ..++.++..|..+... ..
T Consensus 5 ~k~vlITGa-s~gIG~~~a~~l~~---g~~v~~~~r~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~~ 70 (245)
T 3e9n_A 5 KKIAVVTGA-TGGMGIEIVKDLSR---DHIVYALGRNPEHLAALAE----------IEGVEPIESDIVKEVLEEGGVDKL 70 (245)
T ss_dssp -CEEEEEST-TSHHHHHHHHHHTT---TSEEEEEESCHHHHHHHHT----------STTEEEEECCHHHHHHTSSSCGGG
T ss_pred CCEEEEEcC-CCHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHh----------hcCCcceecccchHHHHHHHHHHH
Confidence 567777775 56677788877654 5789999999887665543 1345666655554321 12
Q ss_pred CCCCcEEEEEEeCCCCC
Q 041272 169 PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.+.+...
T Consensus 71 ~~~~~id~lv~~Ag~~~ 87 (245)
T 3e9n_A 71 KNLDHVDTLVHAAAVAR 87 (245)
T ss_dssp TTCSCCSEEEECC----
T ss_pred HhcCCCCEEEECCCcCC
Confidence 22236899999987644
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=91.07 E-value=1.1 Score=36.99 Aligned_cols=118 Identities=14% Similarity=0.038 Sum_probs=68.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeC-ChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI-QSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~-s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~- 168 (267)
.++++|=.|++. .++..+++.+-. -+.+|+.++. +++..+...+.++..+ .++.++..|..+.... .
T Consensus 17 ~~k~~lVTGas~-gIG~aia~~l~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~ 88 (270)
T 3is3_A 17 DGKVALVTGSGR-GIGAAVAVHLGR--LGAKVVVNYANSTKDAEKVVSEIKALG-----SDAIAIKADIRQVPEIVKLFD 88 (270)
T ss_dssp TTCEEEESCTTS-HHHHHHHHHHHH--TTCEEEEEESSCHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHH--CCCEEEEEcCCCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHH
Confidence 366888888654 455555554322 1578988775 4555666666555543 5677777666654321 1
Q ss_pred ---CCCCcEEEEEEeCCCCCCCCCceeech-----------hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 ---PKSTAVRLVAFNLGYLPGGDKSVITTS-----------ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~lp~~d~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.....+|+++.|.+........ .... .....+.+.+.+.++++|.++.+.-
T Consensus 89 ~~~~~~g~id~lvnnAg~~~~~~~~-~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 89 QAVAHFGHLDIAVSNSGVVSFGHLK-DVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HHHHHHSCCCEEECCCCCCCCCCGG-GCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcc-cCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 1112589999998775432211 0111 1223456677788888888776543
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.99 E-value=1.7 Score=35.33 Aligned_cols=88 Identities=8% Similarity=0.025 Sum_probs=54.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.++++|=.|++.| ++..+++.+-. .+.+|+.++.+++.++.+.+.+..... ...++.++..|..+.... .
T Consensus 6 ~~k~~lVTGas~G-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (250)
T 3nyw_A 6 QKGLAIITGASQG-IGAVIAAGLAT--DGYRVVLIARSKQNLEKVHDEIMRSNK--HVQEPIVLPLDITDCTKADTEIKD 80 (250)
T ss_dssp CCCEEEEESTTSH-HHHHHHHHHHH--HTCEEEEEESCHHHHHHHHHHHHHHCT--TSCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHhcc--ccCcceEEeccCCCHHHHHHHHHH
Confidence 3567887776654 44444443321 057999999999988887777655420 014667776666554321 1
Q ss_pred --CCCCcEEEEEEeCCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp~ 186 (267)
.....+|+++.+.+....
T Consensus 81 ~~~~~g~iD~lvnnAg~~~~ 100 (250)
T 3nyw_A 81 IHQKYGAVDILVNAAAMFMD 100 (250)
T ss_dssp HHHHHCCEEEEEECCCCCCC
T ss_pred HHHhcCCCCEEEECCCcCCC
Confidence 111369999999887543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.95 E-value=0.8 Score=37.98 Aligned_cols=117 Identities=17% Similarity=0.118 Sum_probs=66.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC-hHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ-SEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s-~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~- 168 (267)
.+++||=.|++. .++..+++.+-. .+.+|+.++.. .+..+...+.++..+ .++.++..|..+.... .
T Consensus 30 ~gk~~lVTGas~-GIG~aia~~la~--~G~~V~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~d~~~v~~~~~ 101 (271)
T 3v2g_A 30 AGKTAFVTGGSR-GIGAAIAKRLAL--EGAAVALTYVNAAERAQAVVSEIEQAG-----GRAVAIRADNRDAEAIEQAIR 101 (271)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHH--TTCEEEEEESSCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHH--CCCEEEEEeCCCHHHHHHHHHHHHhcC-----CcEEEEECCCCCHHHHHHHHH
Confidence 467888888765 455555544322 15789988655 455555555555433 4677777666554321 1
Q ss_pred ---CCCCcEEEEEEeCCCCCCCCCceeech-----------hhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 ---PKSTAVRLVAFNLGYLPGGDKSVITTS-----------ETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~lp~~d~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.....+|+++.+.+........ .... .....+++.+.+.++++|.++.+.
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~-~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 102 ETVEALGGLDILVNSAGIWHSAPLE-ETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGG-GCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred HHHHHcCCCcEEEECCCCCCCCChh-hCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1112689999998775432111 0111 122345667778888888876653
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=90.95 E-value=1 Score=37.87 Aligned_cols=85 Identities=11% Similarity=0.113 Sum_probs=52.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC------------hHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ------------SEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s------------~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
.+.++|=.|++.| ++..+++.+-. -+.+|+.+|.+ ++.++.+.+.++..+ .++.++..|.
T Consensus 27 ~gk~~lVTGas~G-IG~aia~~la~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv 98 (299)
T 3t7c_A 27 EGKVAFITGAARG-QGRSHAITLAR--EGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG-----RRIIASQVDV 98 (299)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT-----CCEEEEECCT
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHH--CCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC-----CceEEEECCC
Confidence 4668888887654 45555443321 16799999987 666666666665543 5677777766
Q ss_pred hhhhhc---C----CCCCcEEEEEEeCCCCCC
Q 041272 162 SRMEEI---V----PKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 162 ~~l~~~---~----~~~~~~d~ii~~~~~lp~ 186 (267)
.+.... . .....+|+++.|.+....
T Consensus 99 ~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~ 130 (299)
T 3t7c_A 99 RDFDAMQAAVDDGVTQLGRLDIVLANAALASE 130 (299)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 654331 1 111368999999876543
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.54 Score=38.96 Aligned_cols=85 Identities=14% Similarity=0.120 Sum_probs=52.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC------------hHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ------------SEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s------------~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
.+.+||=-|++ |.++..+++.+-. -+.+|+.+|.+ ++.++...+.+...+ .++.++..|.
T Consensus 12 ~gk~vlVTGas-~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~ 83 (278)
T 3sx2_A 12 TGKVAFITGAA-RGQGRAHAVRLAA--DGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG-----SRIVARQADV 83 (278)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHH--TTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT-----CCEEEEECCT
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHH--CCCeEEEEecccccccccccccchHHHHHHHHHHHhcC-----CeEEEEeCCC
Confidence 36688887755 4555555554322 15799999987 666666666555543 5677777766
Q ss_pred hhhhhc---CC----CCCcEEEEEEeCCCCCC
Q 041272 162 SRMEEI---VP----KSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 162 ~~l~~~---~~----~~~~~d~ii~~~~~lp~ 186 (267)
.+.... .. ....+|+++.|.+..+.
T Consensus 84 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~ 115 (278)
T 3sx2_A 84 RDRESLSAALQAGLDELGRLDIVVANAGIAPM 115 (278)
T ss_dssp TCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 654321 11 11258999999887543
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=90.76 E-value=2.5 Score=34.40 Aligned_cols=84 Identities=14% Similarity=0.070 Sum_probs=51.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh--hhh---hhc-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH--SRM---EEI- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~--~~l---~~~- 167 (267)
.+++||=.|.+ |.++..+++.+-. -+.+|+.+|.+++.++.+.+.+...+ ..++.++..|. .+. ...
T Consensus 11 ~~k~vlVTGas-~gIG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~ 83 (252)
T 3f1l_A 11 NDRIILVTGAS-DGIGREAAMTYAR--YGATVILLGRNEEKLRQVASHINEET----GRQPQWFILDLLTCTSENCQQLA 83 (252)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHH----SCCCEEEECCTTTCCHHHHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhhc----CCCceEEEEecccCCHHHHHHHH
Confidence 46688877755 4555555554322 15799999999998887777665533 23556665554 222 111
Q ss_pred ---CCCCCcEEEEEEeCCCC
Q 041272 168 ---VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ---~~~~~~~d~ii~~~~~l 184 (267)
......+|+++.|.+..
T Consensus 84 ~~~~~~~g~id~lv~nAg~~ 103 (252)
T 3f1l_A 84 QRIAVNYPRLDGVLHNAGLL 103 (252)
T ss_dssp HHHHHHCSCCSEEEECCCCC
T ss_pred HHHHHhCCCCCEEEECCccC
Confidence 11123689999998764
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=90.73 E-value=1.4 Score=39.15 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=35.3
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcE----EEEEeCChHHHHHHHHHHhh
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGC----VYGLDIQSEALKSTSSLLDK 144 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~----v~giD~s~~~i~~a~~~~~~ 144 (267)
.+|+|+.||.|.....+-+.... -.- |.++|+++.+++.-+.|...
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~---~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARS---KNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHH---HTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred ceEEEEecCcCHHHHHHHHhCCc---cccceeeEEEEecCHHHHHHHHHHcCC
Confidence 48999999999999888775210 012 77899999999888877653
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.71 E-value=2.4 Score=30.56 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=27.6
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHH
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~ 139 (267)
+++|+=+|+ |.++..+++.+.. .+.+|+.+|.+++.++..+
T Consensus 4 ~m~i~IiG~--G~iG~~~a~~L~~--~g~~v~~~d~~~~~~~~~~ 44 (140)
T 1lss_A 4 GMYIIIAGI--GRVGYTLAKSLSE--KGHDIVLIDIDKDICKKAS 44 (140)
T ss_dssp -CEEEEECC--SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEECC--CHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHH
Confidence 468888876 5666666654422 1468999999988766554
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.69 E-value=0.66 Score=38.43 Aligned_cols=84 Identities=5% Similarity=-0.007 Sum_probs=53.9
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C---
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V--- 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~--- 168 (267)
+++||=.|++. .++..+++.+-. .+.+|+.+|.+++.++.+.+.++..+ .++.++..|..+.... .
T Consensus 4 ~k~~lVTGas~-GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~ 75 (264)
T 3tfo_A 4 DKVILITGASG-GIGEGIARELGV--AGAKILLGARRQARIEAIATEIRDAG-----GTALAQVLDVTDRHSVAAFAQAA 75 (264)
T ss_dssp TCEEEESSTTS-HHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHTT-----CEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCcc-HHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHHH
Confidence 56778777664 455555554322 15799999999998888877776644 4566666665543221 1
Q ss_pred -CCCCcEEEEEEeCCCCCC
Q 041272 169 -PKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~lp~ 186 (267)
.....+|+++.|.+..+.
T Consensus 76 ~~~~g~iD~lVnnAG~~~~ 94 (264)
T 3tfo_A 76 VDTWGRIDVLVNNAGVMPL 94 (264)
T ss_dssp HHHHSCCCEEEECCCCCCC
T ss_pred HHHcCCCCEEEECCCCCCC
Confidence 111368999999887543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.59 E-value=1.1 Score=37.01 Aligned_cols=84 Identities=18% Similarity=0.108 Sum_probs=54.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+++||=.|+ +|.++..+++.+-. -+.+|+.+|.+++.++...+.++..+ .++.++..|..+.... .
T Consensus 30 ~~k~vlITGa-sggIG~~la~~L~~--~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dl~~~~~v~~~~~~ 101 (272)
T 1yb1_A 30 TGEIVLITGA-GHGIGRLTAYEFAK--LKSKLVLWDINKHGLEETAAKCKGLG-----AKVHTFVVDCSNREDIYSSAKK 101 (272)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH--CCCEEEEEEcCHHHHHHHHHHHHhcC-----CeEEEEEeeCCCHHHHHHHHHH
Confidence 4567887775 46677666665432 15789999999988777666665533 4677777665543221 1
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.+.+...
T Consensus 102 ~~~~~g~iD~li~~Ag~~~ 120 (272)
T 1yb1_A 102 VKAEIGDVSILVNNAGVVY 120 (272)
T ss_dssp HHHHTCCCSEEEECCCCCC
T ss_pred HHHHCCCCcEEEECCCcCC
Confidence 11125899999987654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=0.45 Score=41.85 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=33.8
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
++.+|+=+|+|. |..+..+++.+| .+|+.+|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G-----a~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLG-----AVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-----CEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHH
Confidence 578999999987 777777777764 579999999887776654
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=1.5 Score=36.40 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=52.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC----------------hHHHHHHHHHHhhccccccccceEEE
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ----------------SEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s----------------~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
.+++||=-|++.| ++..+++.+-. .+.+|+.+|.+ ++.++...+.+...+ .++.++
T Consensus 10 ~~k~~lVTGas~g-IG~aia~~la~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 81 (286)
T 3uve_A 10 EGKVAFVTGAARG-QGRSHAVRLAQ--EGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN-----RRIVTA 81 (286)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT-----CCEEEE
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHH--CCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC-----CceEEE
Confidence 3668888887655 45555543321 15799999987 666666665555433 567777
Q ss_pred ecChhhhhhc---C----CCCCcEEEEEEeCCCCCC
Q 041272 158 NMCHSRMEEI---V----PKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 158 ~~~~~~l~~~---~----~~~~~~d~ii~~~~~lp~ 186 (267)
..|..+.... . .....+|+++.|.+....
T Consensus 82 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~ 117 (286)
T 3uve_A 82 EVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNG 117 (286)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred EcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCC
Confidence 7666544321 1 111268999999887543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.38 E-value=1.2 Score=37.14 Aligned_cols=84 Identities=11% Similarity=0.066 Sum_probs=51.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+++||=.|++ |.++..+++.+-. -+.+|+.+|.+++.++.+.+.+...+ ...+.++..|..+.... .
T Consensus 32 ~gk~~lVTGas-~GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~ 104 (281)
T 4dry_A 32 EGRIALVTGGG-TGVGRGIAQALSA--EGYSVVITGRRPDVLDAAAGEIGGRT----GNIVRAVVCDVGDPDQVAALFAA 104 (281)
T ss_dssp --CEEEETTTT-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHH----SSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC----CCeEEEEEcCCCCHHHHHHHHHH
Confidence 46678877755 5566666654422 15799999999998887777665543 23346666666544321 1
Q ss_pred --CCCCcEEEEEEeCCCC
Q 041272 169 --PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~l 184 (267)
.....+|+++.+.+..
T Consensus 105 ~~~~~g~iD~lvnnAG~~ 122 (281)
T 4dry_A 105 VRAEFARLDLLVNNAGSN 122 (281)
T ss_dssp HHHHHSCCSEEEECCCCC
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 1113589999998764
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=1.6 Score=37.20 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=50.8
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCCCC
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPKST 172 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~~~ 172 (267)
++|.=||+|. | .++..+++. |. ..+|+++|.+++.++.+++ .+ -+.-... ++.+ .. .
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~-G~---~~~V~~~dr~~~~~~~a~~----~G------~~~~~~~---~~~~~~~---~ 93 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS-GF---KGKIYGYDINPESISKAVD----LG------IIDEGTT---SIAKVED---F 93 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT-TC---CSEEEEECSCHHHHHHHHH----TT------SCSEEES---CTTGGGG---G
T ss_pred CEEEEEeeCHHHHHHHHHHHhC-CC---CCEEEEEECCHHHHHHHHH----CC------CcchhcC---CHHHHhh---c
Confidence 6899999775 3 233333333 11 1289999999988777654 22 1111111 1121 11 1
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
..|+|+...+ +....++++++...+++|.++
T Consensus 94 ~aDvVilavp------------~~~~~~vl~~l~~~l~~~~iv 124 (314)
T 3ggo_A 94 SPDFVMLSSP------------VRTFREIAKKLSYILSEDATV 124 (314)
T ss_dssp CCSEEEECSC------------GGGHHHHHHHHHHHSCTTCEE
T ss_pred cCCEEEEeCC------------HHHHHHHHHHHhhccCCCcEE
Confidence 4678877742 123457888888889998765
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.33 E-value=1.3 Score=36.96 Aligned_cols=147 Identities=12% Similarity=0.053 Sum_probs=81.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|.+.| ++..+|+.+-. -+++|+.+|.+++.++.+.+.+ + .++..+..|..+..+ .
T Consensus 28 ~gKvalVTGas~G-IG~aiA~~la~--~Ga~V~i~~r~~~~l~~~~~~~---g-----~~~~~~~~Dv~~~~~v~~~~~~ 96 (273)
T 4fgs_A 28 NAKIAVITGATSG-IGLAAAKRFVA--EGARVFITGRRKDVLDAAIAEI---G-----GGAVGIQADSANLAELDRLYEK 96 (273)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHH---C-----TTCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHc---C-----CCeEEEEecCCCHHHHHHHHHH
Confidence 4677887787665 45444443322 1689999999999887765544 2 345555555544322 1
Q ss_pred -CCCCCcEEEEEEeCCCCCCCCCceeech-----------hhHHHHHHHHHhcccCCcEEEEEEe-cCC---CCChh---
Q 041272 168 -VPKSTAVRLVAFNLGYLPGGDKSVITTS-----------ETTKMALEAAERILIPGGLISMVVY-VGH---PGGRE--- 228 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~~d~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~-~~~---~~~~~--- 228 (267)
...-+.+|+++.|.+..+..... .... ...-...+.+.+.++.+|.++.+.- .+. +....
T Consensus 97 ~~~~~G~iDiLVNNAG~~~~~~~~-~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~~~~~~Y~a 175 (273)
T 4fgs_A 97 VKAEAGRIDVLFVNAGGGSMLPLG-EVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGTPAFSVYAA 175 (273)
T ss_dssp HHHHHSCEEEEEECCCCCCCCCTT-SCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCCTTCHHHHH
T ss_pred HHHHcCCCCEEEECCCCCCCCChh-hccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCCCCchHHHH
Confidence 11224799999998764332111 1111 2223455777888888887765432 111 11111
Q ss_pred hH----HHHHHHHHhCCCCceEEEEEee
Q 041272 229 EL----EAVEAFARSLSVDDWICCKFQM 252 (267)
Q Consensus 229 ~~----~~~~~~~~~l~~~~~~~~~~~~ 252 (267)
.. ...+.+..++...+.++....+
T Consensus 176 sKaav~~ltr~lA~Ela~~gIrVN~V~P 203 (273)
T 4fgs_A 176 SKAALRSFARNWILDLKDRGIRINTLSP 203 (273)
T ss_dssp HHHHHHHHHHHHHHHTTTSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcccCeEEEEEee
Confidence 01 1234455677777777665544
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.27 E-value=2 Score=34.62 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=54.9
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------- 167 (267)
+++||=.|++ |.++..+++.+-. .+.+|+.++.+++..+...+.++..+ .++.++..|..+....
T Consensus 5 ~k~vlITGas-~gIG~~~a~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~ 76 (247)
T 3lyl_A 5 EKVALVTGAS-RGIGFEVAHALAS--KGATVVGTATSQASAEKFENSMKEKG-----FKARGLVLNISDIESIQNFFAEI 76 (247)
T ss_dssp TCEEEESSCS-SHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCC-ChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEecCCCHHHHHHHHHHH
Confidence 5677877754 5566555554422 15799999999998888777776644 4677777666554321
Q ss_pred CCCCCcEEEEEEeCCCCCC
Q 041272 168 VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~ 186 (267)
......+|+++.+.+..+.
T Consensus 77 ~~~~~~id~li~~Ag~~~~ 95 (247)
T 3lyl_A 77 KAENLAIDILVNNAGITRD 95 (247)
T ss_dssp HHTTCCCSEEEECCCCCCC
T ss_pred HHHcCCCCEEEECCCCCCC
Confidence 1122368999999877543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=90.20 E-value=1 Score=37.61 Aligned_cols=99 Identities=12% Similarity=0.061 Sum_probs=56.1
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc--------------ccccceEEEecCh
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK--------------AEKGLVKLFNMCH 161 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~--------------~~~~~v~~~~~~~ 161 (267)
.+|.=||+|+ ++..+|..+-. -+.+|+.+|.+++.++.+++.+...... ....++...
T Consensus 5 ~kV~VIGaG~--mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~---- 76 (283)
T 4e12_A 5 TNVTVLGTGV--LGSQIAFQTAF--HGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS---- 76 (283)
T ss_dssp CEEEEECCSH--HHHHHHHHHHH--TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE----
T ss_pred CEEEEECCCH--HHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe----
Confidence 4777788765 43333332211 0468999999999998888764321100 001123332
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
.++.+.. ...|+|+...+. ..+....+++++...++|+.++
T Consensus 77 ~~~~~~~---~~aDlVi~av~~----------~~~~~~~v~~~l~~~~~~~~il 117 (283)
T 4e12_A 77 DDLAQAV---KDADLVIEAVPE----------SLDLKRDIYTKLGELAPAKTIF 117 (283)
T ss_dssp SCHHHHT---TTCSEEEECCCS----------CHHHHHHHHHHHHHHSCTTCEE
T ss_pred CCHHHHh---ccCCEEEEeccC----------cHHHHHHHHHHHHhhCCCCcEE
Confidence 1222222 146888877321 2335567888888888988766
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=2.1 Score=34.90 Aligned_cols=83 Identities=13% Similarity=0.048 Sum_probs=50.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cCC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IVP- 169 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~~- 169 (267)
.+++||=.|. +|.++..+++.+-. .+.+|+.++.+++.++...+.+...+ .++.++..|..+... ...
T Consensus 13 ~~k~vlVTGa-s~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 84 (260)
T 2zat_A 13 ENKVALVTAS-TDGIGLAIARRLAQ--DGAHVVVSSRKQENVDRTVATLQGEG-----LSVTGTVCHVGKAEDRERLVAM 84 (260)
T ss_dssp TTCEEEESSC-SSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEccCCCHHHHHHHHHH
Confidence 3567887775 55666666654422 15799999999987776666555433 356666655543322 110
Q ss_pred ---CCCcEEEEEEeCCCC
Q 041272 170 ---KSTAVRLVAFNLGYL 184 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~l 184 (267)
....+|+++.+.+..
T Consensus 85 ~~~~~g~iD~lv~~Ag~~ 102 (260)
T 2zat_A 85 AVNLHGGVDILVSNAAVN 102 (260)
T ss_dssp HHHHHSCCCEEEECCCCC
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 112589999998764
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=90.10 E-value=3 Score=34.42 Aligned_cols=85 Identities=12% Similarity=0.020 Sum_probs=53.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+++||=.|.+ |.++..+++.+-. .+.+|+.+|.+++.++.+.+.++..+. ...++.++..|..+.... .
T Consensus 10 ~~k~vlVTGas-~gIG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~ 84 (281)
T 3svt_A 10 QDRTYLVTGGG-SGIGKGVAAGLVA--AGASVMIVGRNPDKLAGAVQELEALGA--NGGAIRYEPTDITNEDETARAVDA 84 (281)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTTCC--SSCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCHHHHHHHHHH
Confidence 35678887765 4555555554322 157999999999988888777766441 112677777766654321 1
Q ss_pred --CCCCcEEEEEEeCCC
Q 041272 169 --PKSTAVRLVAFNLGY 183 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~ 183 (267)
.....+|+++.+.+.
T Consensus 85 ~~~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 85 VTAWHGRLHGVVHCAGG 101 (281)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHcCCCCEEEECCCc
Confidence 111258999999875
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=89.96 E-value=2 Score=37.84 Aligned_cols=87 Identities=8% Similarity=0.031 Sum_probs=52.4
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChH---HHHHHHHHHhhccc----cccccceEEEecChhhhhhc
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE---ALKSTSSLLDKTTS----KAEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~---~i~~a~~~~~~~~~----~~~~~~v~~~~~~~~~l~~~ 167 (267)
+++||=.| |+|.++..+++.+-. .+.+|++++.++. ..+...+.++.... .....++.++.+|..+...+
T Consensus 69 ~~~vlVTG-atG~iG~~l~~~L~~--~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 145 (427)
T 4f6c_A 69 LGNTLLTG-ATGFLGAYLIEALQG--YSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV 145 (427)
T ss_dssp CEEEEEEC-TTSHHHHHHHHHHTT--TEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred CCEEEEec-CCcHHHHHHHHHHHc--CCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence 45788777 578888888877643 2579999998887 44444443322100 00135788888777664443
Q ss_pred CCCCCcEEEEEEeCCCCC
Q 041272 168 VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp 185 (267)
. ....+|+|+.+.+...
T Consensus 146 ~-~~~~~d~Vih~A~~~~ 162 (427)
T 4f6c_A 146 V-LPENMDTIIHAGARTD 162 (427)
T ss_dssp C-CSSCCSEEEECCCCC-
T ss_pred C-CcCCCCEEEECCcccC
Confidence 3 3457899998876643
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=5.6 Score=33.75 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=66.8
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh-hhhc-----CC
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR-MEEI-----VP 169 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~-----~~ 169 (267)
..|++||||-=.....+.. + ++.+|+=|| .|+.++..++.+.+.+. ....+..++..|..+ +.+. +.
T Consensus 104 ~QvV~LGaGlDTra~Rl~~--~---~~~~v~evD-~P~vi~~k~~lL~~~~~-~~~~~~~~v~~Dl~d~~~~~l~~~g~d 176 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDW--P---TGTTVYEID-QPKVLAYKSTTLAEHGV-TPTADRREVPIDLRQDWPPALRSAGFD 176 (310)
T ss_dssp CEEEEETCTTCCHHHHSCC--C---TTCEEEEEE-CHHHHHHHHHHHHHTTC-CCSSEEEEEECCTTSCHHHHHHHTTCC
T ss_pred CeEEEeCCCCCchhhhccC--C---CCcEEEEcC-CHHHHHHHHHHHHhcCC-CCCCCeEEEecchHhhHHHHHHhccCC
Confidence 5799999997665433321 1 147899999 69999999998875331 013456677665543 2211 11
Q ss_pred CCCcEEEEEEe-CCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 170 KSTAVRLVAFN-LGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 170 ~~~~~d~ii~~-~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+.+.-++... +.|+ ..+...++++.+...+.||+.+++....
T Consensus 177 ~~~Pt~~i~Egvl~Yl---------~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 177 PSARTAWLAEGLLMYL---------PATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp TTSCEEEEECSCGGGS---------CHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred CCCCEEEEEechHhhC---------CHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 22233233222 1222 2345678999999988899998776553
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=89.89 E-value=0.14 Score=49.67 Aligned_cols=95 Identities=16% Similarity=0.223 Sum_probs=58.3
Q ss_pred hcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----h
Q 041272 91 VVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----M 164 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l 164 (267)
.+++|++||=.|+ |. |..++.+|+..| ++|++++.++ ..+. ++ .+ ... ++.....+ +
T Consensus 342 ~l~~G~~VLI~gaaGgvG~~aiqlAk~~G-----a~V~~t~~~~-k~~~----l~-lg----a~~--v~~~~~~~~~~~i 404 (795)
T 3slk_A 342 GLRPGESLLVHSAAGGVGMAAIQLARHLG-----AEVYATASED-KWQA----VE-LS----REH--LASSRTCDFEQQF 404 (795)
T ss_dssp CCCTTCCEEEESTTBHHHHHHHHHHHHTT-----CCEEEECCGG-GGGG----SC-SC----GGG--EECSSSSTHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHcC-----CEEEEEeChH-Hhhh----hh-cC----hhh--eeecCChhHHHHH
Confidence 4678999999995 44 899999999874 6899998554 2111 11 22 111 11111112 2
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+.. ....+|+++-..+- ..++...+.|+|||+++...
T Consensus 405 ~~~t-~g~GvDvVld~~gg----------------~~~~~~l~~l~~~Gr~v~iG 442 (795)
T 3slk_A 405 LGAT-GGRGVDVVLNSLAG----------------EFADASLRMLPRGGRFLELG 442 (795)
T ss_dssp HHHS-CSSCCSEEEECCCT----------------TTTHHHHTSCTTCEEEEECC
T ss_pred HHHc-CCCCeEEEEECCCc----------------HHHHHHHHHhcCCCEEEEec
Confidence 2222 22358888876421 35678899999999997653
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.88 E-value=1.3 Score=36.34 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=55.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+++||=.|.+ |.++..+++.+-. -+.+|+.+|.+++.++.+.+.++..+ ..++.++..|..+.... .
T Consensus 9 ~~k~vlVTGas-~gIG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~Dv~~~~~v~~~~~~ 81 (262)
T 3pk0_A 9 QGRSVVVTGGT-KGIGRGIATVFAR--AGANVAVAGRSTADIDACVADLDQLG----SGKVIGVQTDVSDRAQCDALAGR 81 (262)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTTS----SSCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhhC----CCcEEEEEcCCCCHHHHHHHHHH
Confidence 35677777754 5566666554422 15799999999998888777776543 25677777666654321 1
Q ss_pred --CCCCcEEEEEEeCCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp~ 186 (267)
.....+|+++.+.+..+.
T Consensus 82 ~~~~~g~id~lvnnAg~~~~ 101 (262)
T 3pk0_A 82 AVEEFGGIDVVCANAGVFPD 101 (262)
T ss_dssp HHHHHSCCSEEEECCCCCCC
T ss_pred HHHHhCCCCEEEECCCCCCC
Confidence 111258999999877543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=89.77 E-value=1.9 Score=35.42 Aligned_cols=86 Identities=13% Similarity=0.097 Sum_probs=53.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh---hcCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME---EIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~---~~~~~ 170 (267)
.+++||=.|++ |.++..+++.+-. -+.+|+.+|.+++.++.+.+.+...+ ....+.++..|..+.. .....
T Consensus 9 ~~k~~lVTGas-~gIG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~D~~~~~~~~~~~~~ 82 (267)
T 3t4x_A 9 KGKTALVTGST-AGIGKAIATSLVA--EGANVLINGRREENVNETIKEIRAQY---PDAILQPVVADLGTEQGCQDVIEK 82 (267)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHC---TTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhhC---CCceEEEEecCCCCHHHHHHHHHh
Confidence 35678877755 5566565554322 15799999999988887777665543 1235566665554432 22222
Q ss_pred CCcEEEEEEeCCCCC
Q 041272 171 STAVRLVAFNLGYLP 185 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp 185 (267)
-..+|+++.|.+...
T Consensus 83 ~g~id~lv~nAg~~~ 97 (267)
T 3t4x_A 83 YPKVDILINNLGIFE 97 (267)
T ss_dssp CCCCSEEEECCCCCC
T ss_pred cCCCCEEEECCCCCC
Confidence 236899999987644
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.74 E-value=2.5 Score=36.93 Aligned_cols=102 Identities=12% Similarity=0.032 Sum_probs=67.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+||.++.+-|.++..++.. .++.+.=|--.-..++.|+..++. ...++.+... +. .....
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~--------~~~~~~ds~~~~~~~~~n~~~~~~--~~~~~~~~~~----~~---~~~~~ 100 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH--------KPYSIGDSYISELATRENLRLNGI--DESSVKFLDS----TA---DYPQQ 100 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG--------CCEEEESCHHHHHHHHHHHHHTTC--CGGGSEEEET----TS---CCCSS
T ss_pred CCCCEEEECCCCCHHHHhhccC--------CceEEEhHHHHHHHHHHHHHHcCC--CccceEeccc----cc---ccccC
Confidence 4578999999999999988753 345664466666678888888772 1123555421 11 11236
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+|+++.-+ |.. .......|.++...|+||+.+++..-.+
T Consensus 101 ~~~v~~~l---pk~-------~~~l~~~L~~l~~~l~~~~~i~~~g~~~ 139 (375)
T 4dcm_A 101 PGVVLIKV---PKT-------LALLEQQLRALRKVVTSDTRIIAGAKAR 139 (375)
T ss_dssp CSEEEEEC---CSC-------HHHHHHHHHHHHTTCCTTSEEEEEEEGG
T ss_pred CCEEEEEc---CCC-------HHHHHHHHHHHHhhCCCCCEEEEEeccc
Confidence 88888763 222 3445677888999999999997766543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=89.74 E-value=1.1 Score=36.84 Aligned_cols=86 Identities=12% Similarity=0.022 Sum_probs=53.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+.+||=.|++.| ++..+++.+-. -+.+|+.+|.+++.++.+.+.+.... ...++.++..|..+.... .
T Consensus 7 ~~k~~lVTGas~G-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (265)
T 3lf2_A 7 SEAVAVVTGGSSG-IGLATVELLLE--AGAAVAFCARDGERLRAAESALRQRF---PGARLFASVCDVLDALQVRAFAEA 80 (265)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHS---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhc---CCceEEEEeCCCCCHHHHHHHHHH
Confidence 3567888886654 55555544322 15799999999998888777776522 023477776666543321 1
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.|.+..+
T Consensus 81 ~~~~~g~id~lvnnAg~~~ 99 (265)
T 3lf2_A 81 CERTLGCASILVNNAGQGR 99 (265)
T ss_dssp HHHHHCSCSEEEECCCCCC
T ss_pred HHHHcCCCCEEEECCCCCC
Confidence 11125899999987643
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=89.72 E-value=0.69 Score=38.35 Aligned_cols=84 Identities=8% Similarity=-0.005 Sum_probs=52.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~-- 168 (267)
.+++||=-|+ +|.++..+++.+-. .+.+|+.+|.+++.++...+.++..+ .++.++..|..+... ..
T Consensus 27 ~~k~~lVTGa-s~GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~ 98 (270)
T 3ftp_A 27 DKQVAIVTGA-SRGIGRAIALELAR--RGAMVIGTATTEAGAEGIGAAFKQAG-----LEGRGAVLNVNDATAVDALVES 98 (270)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHT-----CCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEEeCCCHHHHHHHHHH
Confidence 3567777675 45566655554322 15799999999988887777776544 456666655554322 11
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.|.+...
T Consensus 99 ~~~~~g~iD~lvnnAg~~~ 117 (270)
T 3ftp_A 99 TLKEFGALNVLVNNAGITQ 117 (270)
T ss_dssp HHHHHSCCCEEEECCCCCC
T ss_pred HHHHcCCCCEEEECCCCCC
Confidence 11125899999987644
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=89.72 E-value=1.6 Score=35.88 Aligned_cols=117 Identities=16% Similarity=0.081 Sum_probs=66.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCCh---HHHHHHHHHHhhccccccccceEEEecChhhhhhc---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS---EALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~---~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~--- 167 (267)
.+.+||=.|.+ |.++..+++.+-. -+.+|+.++.+. +.++...+.++..+ .++.++..|..+....
T Consensus 10 ~~k~vlVTGas-~GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~ 81 (262)
T 3ksu_A 10 KNKVIVIAGGI-KNLGALTAKTFAL--ESVNLVLHYHQAKDSDTANKLKDELEDQG-----AKVALYQSDLSNEEEVAKL 81 (262)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHTT--SSCEEEEEESCGGGHHHHHHHHHHHHTTT-----CEEEEEECCCCSHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH--CCCEEEEEecCccCHHHHHHHHHHHHhcC-----CcEEEEECCCCCHHHHHHH
Confidence 35678877765 5567777765543 167899987654 34444444444433 4677777666544321
Q ss_pred C----CCCCcEEEEEEeCCCCCCCCCceeechh-----------hHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 V----PKSTAVRLVAFNLGYLPGGDKSVITTSE-----------TTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 ~----~~~~~~d~ii~~~~~lp~~d~~~~~~~~-----------~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
. .....+|+++.|.+........ ....+ ....+.+.+.+.++++|.++.+.
T Consensus 82 ~~~~~~~~g~iD~lvnnAg~~~~~~~~-~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 82 FDFAEKEFGKVDIAINTVGKVLKKPIV-ETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp HHHHHHHHCSEEEEEECCCCCCSSCGG-GCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcc-cCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 1 1113699999998875432111 11111 12345566677777788876653
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=89.50 E-value=1.3 Score=36.75 Aligned_cols=117 Identities=14% Similarity=0.041 Sum_probs=64.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHH-HHHHHHHHhhccccccccceEEEecChhhhhh---cC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA-LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~-i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~- 168 (267)
.+++||=.|++ |.++..+++.+-. -+.+|+.++.++.. .+.+.+.+...+ .++.++..|..+... ..
T Consensus 28 ~~k~vlVTGas-~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~ 99 (283)
T 1g0o_A 28 EGKVALVTGAG-RGIGREMAMELGR--RGCKVIVNYANSTESAEEVVAAIKKNG-----SDAACVKANVGVVEDIVRMFE 99 (283)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHH--TTCEEEEEESSCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH--CCCEEEEEeCCchHHHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHH
Confidence 35678777755 5566666654422 15799999988643 444444444433 456666666544322 11
Q ss_pred ---CCCCcEEEEEEeCCCCCCCCCceeech-----------hhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 ---PKSTAVRLVAFNLGYLPGGDKSVITTS-----------ETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~lp~~d~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.....+|+++.+.+........ .... .....+++.+.+.++.+|.++.+.
T Consensus 100 ~~~~~~g~iD~lv~~Ag~~~~~~~~-~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 100 EAVKIFGKLDIVCSNSGVVSFGHVK-DVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGG-GCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcc-cCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 0112589999998765332110 0111 122345566677777778776654
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.43 E-value=1.2 Score=36.53 Aligned_cols=118 Identities=10% Similarity=0.014 Sum_probs=68.4
Q ss_pred CCCEEEEecCC-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-----
Q 041272 94 KGDTVVDATCG-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI----- 167 (267)
Q Consensus 94 ~~~~VLDlGcG-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~----- 167 (267)
.+++||=.|++ +|.++..+++.+-. -+.+|+.++.++...+.+++..+.. .++.++..|..+....
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~ 84 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKR--EGAELAFTYVGDRFKDRITEFAAEF------GSELVFPCDVADDAQIDALFA 84 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHHHHHT------TCCCEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHH--cCCCEEEEecchhhHHHHHHHHHHc------CCcEEEECCCCCHHHHHHHHH
Confidence 57799999975 35566666554422 1579999999876666555544443 2466666665543321
Q ss_pred --CCCCCcEEEEEEeCCCCCCC---CCcee-ech-----------hhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGG---DKSVI-TTS-----------ETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~---d~~~~-~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
......+|+++.+.+..+.. ..... ... .....+.+.+.+.++++|.++.+.
T Consensus 85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 85 SLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 11123699999998875421 00001 111 112345566777777788776654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=89.41 E-value=0.81 Score=37.24 Aligned_cols=83 Identities=12% Similarity=0.096 Sum_probs=52.4
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C---
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V--- 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~--- 168 (267)
++++|=.|++ |.++..+++.+-. .+.+|+.++.+++.++...+.+...+ .++.++..|..+.... .
T Consensus 7 ~k~~lVTGas-~gIG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~ 78 (247)
T 2jah_A 7 GKVALITGAS-SGIGEATARALAA--EGAAVAIAARRVEKLRALGDELTAAG-----AKVHVLELDVADRQGVDAAVAST 78 (247)
T ss_dssp TCEEEEESCS-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCC-CHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEECCCCCHHHHHHHHHHH
Confidence 5678887755 5566666654422 15799999999988777666665433 4567776665543221 1
Q ss_pred -CCCCcEEEEEEeCCCCC
Q 041272 169 -PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.+.+...
T Consensus 79 ~~~~g~id~lv~nAg~~~ 96 (247)
T 2jah_A 79 VEALGGLDILVNNAGIML 96 (247)
T ss_dssp HHHHSCCSEEEECCCCCC
T ss_pred HHHcCCCCEEEECCCCCC
Confidence 01125899999987643
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=89.36 E-value=1.5 Score=35.87 Aligned_cols=85 Identities=9% Similarity=0.036 Sum_probs=54.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+++||=-|++. .++..+++.+-. -+.+|+.+|.+++..+...+.+...+ .++.++..|..+.... .
T Consensus 11 ~~k~vlVTGas~-gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~ 82 (256)
T 3gaf_A 11 NDAVAIVTGAAA-GIGRAIAGTFAK--AGASVVVTDLKSEGAEAVAAAIRQAG-----GKAIGLECNVTDEQHREAVIKA 82 (256)
T ss_dssp TTCEEEECSCSS-HHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEECCCCCHHHHHHHHHH
Confidence 456788777655 455554443311 05799999999988888777776644 5677777666554321 1
Q ss_pred --CCCCcEEEEEEeCCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp~ 186 (267)
.....+|+++.|.+....
T Consensus 83 ~~~~~g~id~lv~nAg~~~~ 102 (256)
T 3gaf_A 83 ALDQFGKITVLVNNAGGGGP 102 (256)
T ss_dssp HHHHHSCCCEEEECCCCCCC
T ss_pred HHHHcCCCCEEEECCCCCCC
Confidence 111258999999877543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=89.29 E-value=1.6 Score=34.93 Aligned_cols=84 Identities=14% Similarity=-0.042 Sum_probs=53.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cCCC-
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IVPK- 170 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~~~- 170 (267)
+++||=.|++ |.++..+++.+-. -+.+|+.++.+++.++.+.+.+.... ..++.++..|..+... ....
T Consensus 2 ~k~vlITGas-~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~ 74 (235)
T 3l77_A 2 MKVAVITGAS-RGIGEAIARALAR--DGYALALGARSVDRLEKIAHELMQEQ----GVEVFYHHLDVSKAESVEEFSKKV 74 (235)
T ss_dssp CCEEEEESCS-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHH----CCCEEEEECCTTCHHHHHHHCC-H
T ss_pred CCEEEEECCC-cHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhhc----CCeEEEEEeccCCHHHHHHHHHHH
Confidence 4567777754 5566666655422 15789999999988877776664221 2567777766665433 2221
Q ss_pred ---CCcEEEEEEeCCCCC
Q 041272 171 ---STAVRLVAFNLGYLP 185 (267)
Q Consensus 171 ---~~~~d~ii~~~~~lp 185 (267)
...+|+++.+.+..+
T Consensus 75 ~~~~g~id~li~~Ag~~~ 92 (235)
T 3l77_A 75 LERFGDVDVVVANAGLGY 92 (235)
T ss_dssp HHHHSSCSEEEECCCCCC
T ss_pred HHhcCCCCEEEECCcccc
Confidence 126899999987644
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.15 E-value=2.3 Score=34.78 Aligned_cols=86 Identities=15% Similarity=0.016 Sum_probs=52.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---CC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---VP- 169 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~~- 169 (267)
.+++||=.|++ |.++..+++.+-. .+.+|+.+|.+++.++.+.+.+.... ...++.++..|..+.... ..
T Consensus 12 ~~k~vlVTGas-~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~ 85 (267)
T 1iy8_A 12 TDRVVLITGGG-SGLGRATAVRLAA--EGAKLSLVDVSSEGLEASKAAVLETA---PDAEVLTTVADVSDEAQVEAYVTA 85 (267)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHC---TTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhhc---CCceEEEEEccCCCHHHHHHHHHH
Confidence 35678887764 5566666554422 15799999999988776666554431 024566776665543321 11
Q ss_pred ---CCCcEEEEEEeCCCCC
Q 041272 170 ---KSTAVRLVAFNLGYLP 185 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~lp 185 (267)
....+|+++.+.+...
T Consensus 86 ~~~~~g~id~lv~nAg~~~ 104 (267)
T 1iy8_A 86 TTERFGRIDGFFNNAGIEG 104 (267)
T ss_dssp HHHHHSCCSEEEECCCCCC
T ss_pred HHHHcCCCCEEEECCCcCC
Confidence 1125899999987643
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=89.13 E-value=0.97 Score=37.57 Aligned_cols=85 Identities=11% Similarity=0.067 Sum_probs=54.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---CC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---VP- 169 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~~- 169 (267)
.+++||=.|.+. .++..+++.+-. -+.+|+.+|.+++.++...+.+...+ .++.++..|..+.... ..
T Consensus 31 ~gk~~lVTGas~-GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~d~~~v~~~~~~ 102 (276)
T 3r1i_A 31 SGKRALITGAST-GIGKKVALAYAE--AGAQVAVAARHSDALQVVADEIAGVG-----GKALPIRCDVTQPDQVRGMLDQ 102 (276)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHH--TTCEEEEEESSGGGGHHHHHHHHHTT-----CCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEEcCCCCHHHHHHHHHH
Confidence 467888877664 555555544322 15799999999988887777776544 4667776666544321 11
Q ss_pred ---CCCcEEEEEEeCCCCCC
Q 041272 170 ---KSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~lp~ 186 (267)
....+|+++.|.+....
T Consensus 103 ~~~~~g~iD~lvnnAg~~~~ 122 (276)
T 3r1i_A 103 MTGELGGIDIAVCNAGIVSV 122 (276)
T ss_dssp HHHHHSCCSEEEECCCCCCC
T ss_pred HHHHcCCCCEEEECCCCCCC
Confidence 11258999999877543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=89.10 E-value=1.3 Score=35.86 Aligned_cols=84 Identities=14% Similarity=0.055 Sum_probs=53.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cCC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IVP- 169 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~~- 169 (267)
.+++||=.| |+|.++..+++.+-. .+.+|+.+|.+++..+...+.++..+ .++.++..|..+... ...
T Consensus 10 ~~~~vlVtG-asggiG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 81 (255)
T 1fmc_A 10 DGKCAIITG-AGAGIGKEIAITFAT--AGASVVVSDINADAANHVVDEIQQLG-----GQAFACRCDITSEQELSALADF 81 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHT--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHH
Confidence 356787777 567777777775533 15799999999987776666555433 456676666554322 111
Q ss_pred ---CCCcEEEEEEeCCCCC
Q 041272 170 ---KSTAVRLVAFNLGYLP 185 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~lp 185 (267)
....+|+++.+.+...
T Consensus 82 ~~~~~~~~d~vi~~Ag~~~ 100 (255)
T 1fmc_A 82 AISKLGKVDILVNNAGGGG 100 (255)
T ss_dssp HHHHHSSCCEEEECCCCCC
T ss_pred HHHhcCCCCEEEECCCCCC
Confidence 0125899999887643
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=89.04 E-value=0.3 Score=40.39 Aligned_cols=116 Identities=11% Similarity=0.149 Sum_probs=64.6
Q ss_pred CCCEEEEecC-CCChHHHHHHHhcCCCCCCcEEEEEeCChHH-HHHHHHHHhhccccccccceEEEecChhhhhh---cC
Q 041272 94 KGDTVVDATC-GNGYDTLMMLKMVADESSAGCVYGLDIQSEA-LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV 168 (267)
Q Consensus 94 ~~~~VLDlGc-G~G~~~~~la~~~~~~~p~~~v~giD~s~~~-i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~ 168 (267)
.+++||=.|+ |+|.++..+++.+-. -+.+|+.+|.+++. ++...+.+ + .++.++..|..+... ..
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~---~-----~~~~~~~~Dv~~~~~v~~~~ 75 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQE--QGAQLVLTGFDRLRLIQRITDRL---P-----AKAPLLELDVQNEEHLASLA 75 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHH--TTCEEEEEECSCHHHHHHHHTTS---S-----SCCCEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHH--CCCEEEEEecChHHHHHHHHHhc---C-----CCceEEEccCCCHHHHHHHH
Confidence 3578998898 477777777765432 15789999998754 23332211 1 345556555544322 11
Q ss_pred C----CCC---cEEEEEEeCCCCCCC---CCcee-echhh-----------HHHHHHHHHhcccCCcEEEEEE
Q 041272 169 P----KST---AVRLVAFNLGYLPGG---DKSVI-TTSET-----------TKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ~----~~~---~~d~ii~~~~~lp~~---d~~~~-~~~~~-----------~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
. ... .+|+++.+.+..+.. ...+. ...++ ...+.+.+.+.++++|.++.+.
T Consensus 76 ~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (269)
T 2h7i_A 76 GRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD 148 (269)
T ss_dssp HHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence 1 011 699999998765410 00111 11111 2345566677777778777654
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.03 E-value=1.3 Score=37.16 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=52.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cCC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IVP- 169 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~~- 169 (267)
.+++||=.|+ +|.++..+++.+-. -+.+|+.++.+++.++...+.+...+. ...++.++..|..+... ...
T Consensus 25 ~~k~vlVTGa-s~gIG~aia~~L~~--~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~ 99 (297)
T 1xhl_A 25 SGKSVIITGS-SNGIGRSAAVIFAK--EGAQVTITGRNEDRLEETKQQILKAGV--PAEKINAVVADVTEASGQDDIINT 99 (297)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTC--CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCC--CCceEEEEecCCCCHHHHHHHHHH
Confidence 3567877775 55666666654422 157999999999887776666554330 01157777666654332 111
Q ss_pred ---CCCcEEEEEEeCCCCC
Q 041272 170 ---KSTAVRLVAFNLGYLP 185 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~lp 185 (267)
....+|+++.+.+...
T Consensus 100 ~~~~~g~iD~lvnnAG~~~ 118 (297)
T 1xhl_A 100 TLAKFGKIDILVNNAGANL 118 (297)
T ss_dssp HHHHHSCCCEEEECCCCCC
T ss_pred HHHhcCCCCEEEECCCcCc
Confidence 1125899999987643
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.95 E-value=1.8 Score=35.92 Aligned_cols=82 Identities=12% Similarity=0.009 Sum_probs=50.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeC-ChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI-QSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~-s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~- 168 (267)
.+.+||=.|++. .++..+++.+-. .+.+|+.+|. +++.++...+.+...+ .++.++..|..+.... .
T Consensus 28 ~~k~~lVTGas~-GIG~aia~~la~--~G~~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~ 99 (280)
T 4da9_A 28 ARPVAIVTGGRR-GIGLGIARALAA--SGFDIAITGIGDAEGVAPVIAELSGLG-----ARVIFLRADLADLSSHQATVD 99 (280)
T ss_dssp CCCEEEEETTTS-HHHHHHHHHHHH--TTCEEEEEESCCHHHHHHHHHHHHHTT-----CCEEEEECCTTSGGGHHHHHH
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHH--CCCeEEEEeCCCHHHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHHHH
Confidence 456788777655 455555544322 1579999995 7777776666665543 5677777766654321 1
Q ss_pred ---CCCCcEEEEEEeCCC
Q 041272 169 ---PKSTAVRLVAFNLGY 183 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~ 183 (267)
.....+|+++.+.+.
T Consensus 100 ~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 100 AVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp HHHHHHSCCCEEEEECC-
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 111258999999876
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=88.85 E-value=1.8 Score=35.41 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=52.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cCC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IVP- 169 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~~- 169 (267)
.+++||=.|. +|.++..+++.+-. .+.+|+.+|.+++.++...+.+...+ .++.++..|..+... ...
T Consensus 8 ~~k~vlVTGa-s~giG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 79 (260)
T 2ae2_A 8 EGCTALVTGG-SRGIGYGIVEELAS--LGASVYTCSRNQKELNDCLTQWRSKG-----FKVEASVCDLSSRSERQELMNT 79 (260)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHH
Confidence 3567887775 55666666654422 15799999999988776666555433 456677666554322 110
Q ss_pred ---CC-CcEEEEEEeCCCCC
Q 041272 170 ---KS-TAVRLVAFNLGYLP 185 (267)
Q Consensus 170 ---~~-~~~d~ii~~~~~lp 185 (267)
.. ..+|+++.+.+...
T Consensus 80 ~~~~~~g~id~lv~~Ag~~~ 99 (260)
T 2ae2_A 80 VANHFHGKLNILVNNAGIVI 99 (260)
T ss_dssp HHHHTTTCCCEEEECCCCCC
T ss_pred HHHHcCCCCCEEEECCCCCC
Confidence 01 36899999987643
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.84 E-value=1.2 Score=36.93 Aligned_cols=84 Identities=15% Similarity=0.102 Sum_probs=52.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeC-------------ChHHHHHHHHHHhhccccccccceEEEecC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI-------------QSEALKSTSSLLDKTTSKAEKGLVKLFNMC 160 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~-------------s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~ 160 (267)
.+++||=.|.+. .++..+++.+-. .+.+|+.+|. +++.++...+.+...+ .++.++..|
T Consensus 14 ~gk~~lVTGas~-gIG~a~a~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D 85 (280)
T 3pgx_A 14 QGRVAFITGAAR-GQGRSHAVRLAA--EGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG-----RKALTRVLD 85 (280)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHH--TTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT-----CCEEEEECC
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHH--CCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC-----CeEEEEEcC
Confidence 466788777665 455555544321 1579999998 6777777766666544 567777666
Q ss_pred hhhhhhc---C----CCCCcEEEEEEeCCCCC
Q 041272 161 HSRMEEI---V----PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 161 ~~~l~~~---~----~~~~~~d~ii~~~~~lp 185 (267)
..+.... . .....+|+++.|.+...
T Consensus 86 v~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~ 117 (280)
T 3pgx_A 86 VRDDAALRELVADGMEQFGRLDVVVANAGVLS 117 (280)
T ss_dssp TTCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 6543321 1 11126899999987754
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=88.65 E-value=1.6 Score=37.06 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=51.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC------------hHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ------------SEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s------------~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
.+++||=-|++. .++..+++.+-. -+.+|+.+|.+ ++.++...+.+...+ .++.++..|.
T Consensus 45 ~gk~~lVTGas~-GIG~aia~~la~--~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv 116 (317)
T 3oec_A 45 QGKVAFITGAAR-GQGRTHAVRLAQ--DGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG-----RRIIARQADV 116 (317)
T ss_dssp TTCEEEESSCSS-HHHHHHHHHHHH--TTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT-----CCEEEEECCT
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHH--CCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC-----CeEEEEECCC
Confidence 466788777655 455555544321 15799999986 566666555555533 5677777666
Q ss_pred hhhhhc---C----CCCCcEEEEEEeCCCCC
Q 041272 162 SRMEEI---V----PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 162 ~~l~~~---~----~~~~~~d~ii~~~~~lp 185 (267)
.+.... . .....+|+++.|.+...
T Consensus 117 ~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~ 147 (317)
T 3oec_A 117 RDLASLQAVVDEALAEFGHIDILVSNVGISN 147 (317)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 544321 1 11136899999987644
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.61 E-value=1.3 Score=36.60 Aligned_cols=84 Identities=13% Similarity=0.007 Sum_probs=52.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+++||=.|+ +|.++..+++.+-. -+.+|+.+|.+++.++.+.+.+...+ .++.++..|..+.... .
T Consensus 20 ~~k~vlVTGa-s~gIG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 91 (273)
T 1ae1_A 20 KGTTALVTGG-SKGIGYAIVEELAG--LGARVYTCSRNEKELDECLEIWREKG-----LNVEGSVCDLLSRTERDKLMQT 91 (273)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECC-cchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CceEEEECCCCCHHHHHHHHHH
Confidence 3567888775 45566666654422 15799999999988776666555433 4566666665543221 1
Q ss_pred --CCC-CcEEEEEEeCCCCC
Q 041272 169 --PKS-TAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~-~~~d~ii~~~~~lp 185 (267)
... ..+|+++.+.+...
T Consensus 92 ~~~~~~g~id~lv~nAg~~~ 111 (273)
T 1ae1_A 92 VAHVFDGKLNILVNNAGVVI 111 (273)
T ss_dssp HHHHTTSCCCEEEECCCCCC
T ss_pred HHHHcCCCCcEEEECCCCCC
Confidence 001 36899999987643
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.40 E-value=1.3 Score=36.07 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=51.0
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC---
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV--- 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~--- 168 (267)
+++||=.|. +|.++..+++.+-. -+.+|+.++.+++.++...+.+...+ .++.++..|..+... ..
T Consensus 2 ~k~vlVTGa-s~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~ 73 (256)
T 1geg_A 2 KKVALVTGA-GQGIGKAIALRLVK--DGFAVAIADYNDATAKAVASEINQAG-----GHAVAVKVDVSDRDQVFAAVEQA 73 (256)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEECC-CChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHHHHHH
Confidence 356777775 45566666654422 15799999999987776666555433 456666666554332 11
Q ss_pred -CCCCcEEEEEEeCCCCC
Q 041272 169 -PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.+.+..+
T Consensus 74 ~~~~g~id~lv~nAg~~~ 91 (256)
T 1geg_A 74 RKTLGGFDVIVNNAGVAP 91 (256)
T ss_dssp HHHTTCCCEEEECCCCCC
T ss_pred HHHhCCCCEEEECCCCCC
Confidence 11126899999987643
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=88.36 E-value=0.55 Score=38.59 Aligned_cols=84 Identities=11% Similarity=0.086 Sum_probs=47.3
Q ss_pred CCCEEEEecCC-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cCC
Q 041272 94 KGDTVVDATCG-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IVP 169 (267)
Q Consensus 94 ~~~~VLDlGcG-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~~ 169 (267)
.+++||=.|++ +|.++..+++.+-. -+.+|+.++.+++.-+..++ +... ...+.++..|..+... ...
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~-l~~~-----~~~~~~~~~D~~~~~~v~~~~~ 78 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKE--AGAEVALSYQAERLRPEAEK-LAEA-----LGGALLFRADVTQDEELDALFA 78 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHH--HTCEEEEEESCGGGHHHHHH-HHHH-----TTCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHH-HHHh-----cCCcEEEECCCCCHHHHHHHHH
Confidence 35688988986 25666666554321 04789999998862222222 2221 1235566655554322 111
Q ss_pred ----CCCcEEEEEEeCCCCC
Q 041272 170 ----KSTAVRLVAFNLGYLP 185 (267)
Q Consensus 170 ----~~~~~d~ii~~~~~lp 185 (267)
....+|+++.+.+..+
T Consensus 79 ~~~~~~g~iD~lv~~Ag~~~ 98 (261)
T 2wyu_A 79 GVKEAFGGLDYLVHAIAFAP 98 (261)
T ss_dssp HHHHHHSSEEEEEECCCCCC
T ss_pred HHHHHcCCCCEEEECCCCCC
Confidence 1126899999987643
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=88.19 E-value=0.77 Score=32.19 Aligned_cols=69 Identities=13% Similarity=-0.035 Sum_probs=41.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCC-cEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh---hhhhcCCC
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSA-GCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS---RMEEIVPK 170 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~~ 170 (267)
+++|+=+|+ |.++..+++.+.. .+ .+|+++|.+++.++..+. ..+.++..+.. .+.+.+.
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~--~g~~~v~~~~r~~~~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~- 68 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKT--SSNYSVTVADHDLAALAVLNR-----------MGVATKQVDAKDEAGLAKALG- 68 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHH--CSSEEEEEEESCHHHHHHHHT-----------TTCEEEECCTTCHHHHHHHTT-
T ss_pred cCeEEEECC--CHHHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHh-----------CCCcEEEecCCCHHHHHHHHc-
Confidence 468999998 6666666654422 13 689999999987766541 12333333333 3333332
Q ss_pred CCcEEEEEEeC
Q 041272 171 STAVRLVAFNL 181 (267)
Q Consensus 171 ~~~~d~ii~~~ 181 (267)
.+|+++...
T Consensus 69 --~~d~vi~~~ 77 (118)
T 3ic5_A 69 --GFDAVISAA 77 (118)
T ss_dssp --TCSEEEECS
T ss_pred --CCCEEEECC
Confidence 478888875
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=88.19 E-value=1.5 Score=36.18 Aligned_cols=118 Identities=9% Similarity=0.102 Sum_probs=64.0
Q ss_pred CCCEEEEecCC-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC-
Q 041272 94 KGDTVVDATCG-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV- 168 (267)
Q Consensus 94 ~~~~VLDlGcG-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~- 168 (267)
.+++||=.|.+ +|.++..+++.+-. -+.+|+.++.+++ .+...+.+.... .++.++..|..+... ..
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~--~G~~V~~~~r~~~-~~~~~~~l~~~~-----~~~~~~~~D~~~~~~v~~~~~ 76 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFN--QGATLAFTYLNES-LEKRVRPIAQEL-----NSPYVYELDVSKEEHFKSLYN 76 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHT--TTCEEEEEESSTT-THHHHHHHHHHT-----TCCCEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH--CCCEEEEEeCCHH-HHHHHHHHHHhc-----CCcEEEEcCCCCHHHHHHHHH
Confidence 35688888876 36677777765533 1579999999886 222222232211 235556555554322 11
Q ss_pred ---CCCCcEEEEEEeCCCCCCC--CCce-eechh-----------hHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 ---PKSTAVRLVAFNLGYLPGG--DKSV-ITTSE-----------TTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~lp~~--d~~~-~~~~~-----------~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.....+|+++.+.+..... ...+ ....+ ....+.+.+.+.++++|.++.+.
T Consensus 77 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 144 (275)
T 2pd4_A 77 SVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS 144 (275)
T ss_dssp HHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 1123689999998765320 0011 11111 22344566667776678776654
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=88.19 E-value=1.8 Score=35.87 Aligned_cols=84 Identities=13% Similarity=0.031 Sum_probs=52.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~-- 168 (267)
.+++||=.|++ |.++..+++.+-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+... ..
T Consensus 21 ~~k~vlVTGas-~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~~~~~v~~~~~~ 92 (277)
T 2rhc_B 21 DSEVALVTGAT-SGIGLEIARRLGK--EGLRVFVCARGEEGLRTTLKELREAG-----VEADGRTCDVRSVPEIEALVAA 92 (277)
T ss_dssp TSCEEEEETCS-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CceEEEECCCCCHHHHHHHHHH
Confidence 35678888865 5566666654422 15799999999988776666665433 456666666554322 11
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.+.+...
T Consensus 93 ~~~~~g~iD~lv~~Ag~~~ 111 (277)
T 2rhc_B 93 VVERYGPVDVLVNNAGRPG 111 (277)
T ss_dssp HHHHTCSCSEEEECCCCCC
T ss_pred HHHHhCCCCEEEECCCCCC
Confidence 11125899999987643
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=88.00 E-value=2.8 Score=37.23 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=57.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC-CCc
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK-STA 173 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~-~~~ 173 (267)
+++|+=+|+| .++..+++.+.. -+..|+.||.+++.++.+++. .+.++.+|..+...+... -..
T Consensus 4 ~~~viIiG~G--r~G~~va~~L~~--~g~~vvvId~d~~~v~~~~~~-----------g~~vi~GDat~~~~L~~agi~~ 68 (413)
T 3l9w_A 4 GMRVIIAGFG--RFGQITGRLLLS--SGVKMVVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAK 68 (413)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHH--TTCCEEEEECCHHHHHHHHHT-----------TCCCEESCTTCHHHHHHTTTTT
T ss_pred CCeEEEECCC--HHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHhC-----------CCeEEEcCCCCHHHHHhcCCCc
Confidence 4578888874 566666654432 146899999999999887641 234566665543322111 124
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.|+++...+. +.....+-...+.+.|...++.-..
T Consensus 69 A~~viv~~~~------------~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 69 AEVLINAIDD------------PQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp CSEEEECCSS------------HHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred cCEEEECCCC------------hHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 6666666311 2223344455666788877765443
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.97 E-value=2.6 Score=34.80 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=52.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeC-------------ChHHHHHHHHHHhhccccccccceEEEecC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI-------------QSEALKSTSSLLDKTTSKAEKGLVKLFNMC 160 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~-------------s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~ 160 (267)
.++++|=-|++.| ++..+++.+-. -+.+|+.+|. +++.++...+.+...+ .++.++..|
T Consensus 10 ~~k~~lVTGas~G-IG~a~a~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D 81 (277)
T 3tsc_A 10 EGRVAFITGAARG-QGRAHAVRMAA--EGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN-----RRIVAAVVD 81 (277)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT-----CCEEEEECC
T ss_pred CCCEEEEECCccH-HHHHHHHHHHH--cCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC-----CeEEEEECC
Confidence 3668888786654 55555543321 1579999998 6666766666655533 567777666
Q ss_pred hhhhhhc---CC----CCCcEEEEEEeCCCCCC
Q 041272 161 HSRMEEI---VP----KSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 161 ~~~l~~~---~~----~~~~~d~ii~~~~~lp~ 186 (267)
..+.... .. ....+|+++.|.+....
T Consensus 82 ~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~ 114 (277)
T 3tsc_A 82 TRDFDRLRKVVDDGVAALGRLDIIVANAGVAAP 114 (277)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 6554321 11 11358999999887544
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=87.97 E-value=2.6 Score=34.32 Aligned_cols=83 Identities=13% Similarity=0.021 Sum_probs=53.5
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C---
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V--- 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~--- 168 (267)
+++||=.|.+ |.++..+++.+-. -+.+|+.+|.+++.++.+.+.++..+ .++.++..|..+.... .
T Consensus 6 ~k~vlVTGas-~gIG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~ 77 (257)
T 3imf_A 6 EKVVIITGGS-SGMGKGMATRFAK--EGARVVITGRTKEKLEEAKLEIEQFP-----GQILTVQMDVRNTDDIQKMIEQI 77 (257)
T ss_dssp TCEEEETTTT-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHCCST-----TCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCC-CHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHHH
Confidence 5677777755 5556555554322 15799999999998888877766543 5677777666554321 1
Q ss_pred -CCCCcEEEEEEeCCCCC
Q 041272 169 -PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.|.+...
T Consensus 78 ~~~~g~id~lv~nAg~~~ 95 (257)
T 3imf_A 78 DEKFGRIDILINNAAGNF 95 (257)
T ss_dssp HHHHSCCCEEEECCCCCC
T ss_pred HHHcCCCCEEEECCCCCC
Confidence 11125899999987543
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.90 E-value=1.7 Score=35.09 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=49.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh---hcCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME---EIVP 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~---~~~~ 169 (267)
.++.+||=.|++ |.++..+++.+-. .+.+|+.++.+++.++...+.+. .++.++..|..+.. ....
T Consensus 12 ~~~k~vlVTGas-~gIG~~~a~~l~~--~G~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~ 80 (249)
T 3f9i_A 12 LTGKTSLITGAS-SGIGSAIARLLHK--LGSKVIISGSNEEKLKSLGNALK--------DNYTIEVCNLANKEECSNLIS 80 (249)
T ss_dssp CTTCEEEETTTT-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHC--------SSEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHHHhc--------cCccEEEcCCCCHHHHHHHHH
Confidence 356788877765 4555555554322 15799999999987776655432 35566655554432 2222
Q ss_pred CCCcEEEEEEeCCCCC
Q 041272 170 KSTAVRLVAFNLGYLP 185 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp 185 (267)
....+|+++.+.+...
T Consensus 81 ~~~~id~li~~Ag~~~ 96 (249)
T 3f9i_A 81 KTSNLDILVCNAGITS 96 (249)
T ss_dssp TCSCCSEEEECCC---
T ss_pred hcCCCCEEEECCCCCC
Confidence 2246899999987643
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=87.56 E-value=1.5 Score=36.00 Aligned_cols=118 Identities=9% Similarity=0.055 Sum_probs=61.2
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh------
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE------ 166 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~------ 166 (267)
.+++||=.|.++ |.++..+++.+-. -+.+|+.+|.++...+.. +.+.... ....++..|..+...
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~-~~l~~~~-----~~~~~~~~D~~~~~~v~~~~~ 79 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHR--EGAELAFTYQNDKLKGRV-EEFAAQL-----GSDIVLQCDVAEDASIDTMFA 79 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHH--TTCEEEEEESSTTTHHHH-HHHHHHT-----TCCCEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH--CCCEEEEEcCcHHHHHHH-HHHHHhc-----CCcEEEEccCCCHHHHHHHHH
Confidence 356888888762 6666666665422 157899999987322222 2222211 123445555443321
Q ss_pred -cCCCCCcEEEEEEeCCCCCCC--CCcee--ech-----------hhHHHHHHHHHhcccCCcEEEEEE
Q 041272 167 -IVPKSTAVRLVAFNLGYLPGG--DKSVI--TTS-----------ETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 -~~~~~~~~d~ii~~~~~lp~~--d~~~~--~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.......+|+++.+.+..+.. ...+. ... .....+.+.+.+.++++|.++.+.
T Consensus 80 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (265)
T 1qsg_A 80 ELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 148 (265)
T ss_dssp HHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEc
Confidence 112224699999998764320 00010 111 122344556667776678776654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.51 E-value=1.8 Score=36.03 Aligned_cols=83 Identities=13% Similarity=0.009 Sum_probs=53.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+.+||=.|++. .++..+++.+-. .+.+|+.+|.+++.++...+.+...+ .++.++..|..+.... .
T Consensus 27 ~~k~~lVTGas~-GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~d~~~v~~~~~~ 98 (283)
T 3v8b_A 27 PSPVALITGAGS-GIGRATALALAA--DGVTVGALGRTRTEVEEVADEIVGAG-----GQAIALEADVSDELQMRNAVRD 98 (283)
T ss_dssp CCCEEEEESCSS-HHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHTTTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 466788777654 455555554322 15799999999988887777766543 5677777666554221 1
Q ss_pred --CCCCcEEEEEEeCCCC
Q 041272 169 --PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~l 184 (267)
.....+|+++.|.+..
T Consensus 99 ~~~~~g~iD~lVnnAg~~ 116 (283)
T 3v8b_A 99 LVLKFGHLDIVVANAGIN 116 (283)
T ss_dssp HHHHHSCCCEEEECCCCC
T ss_pred HHHHhCCCCEEEECCCCC
Confidence 1113689999998764
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.44 E-value=2 Score=35.37 Aligned_cols=84 Identities=15% Similarity=0.043 Sum_probs=50.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHH-hhccccccccceEEEecChhhhhh---cC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL-DKTTSKAEKGLVKLFNMCHSRMEE---IV- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~-~~~~~~~~~~~v~~~~~~~~~l~~---~~- 168 (267)
.+++||=.|.+ |.++..+++.+-. .+.+|+.++.+++.++...+.+ +..+ .++.++..|..+... ..
T Consensus 20 ~~k~~lVTGas-~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~Dl~~~~~v~~~~~ 91 (267)
T 1vl8_A 20 RGRVALVTGGS-RGLGFGIAQGLAE--AGCSVVVASRNLEEASEAAQKLTEKYG-----VETMAFRCDVSNYEEVKKLLE 91 (267)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHHC-----CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhcC-----CeEEEEEcCCCCHHHHHHHHH
Confidence 35678877754 5566666654422 1579999999988777665555 2222 356666666554322 11
Q ss_pred ---CCCCcEEEEEEeCCCCC
Q 041272 169 ---PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.+.+...
T Consensus 92 ~~~~~~g~iD~lvnnAg~~~ 111 (267)
T 1vl8_A 92 AVKEKFGKLDTVVNAAGINR 111 (267)
T ss_dssp HHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHcCCCCEEEECCCcCC
Confidence 01125899999987644
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=87.41 E-value=1.6 Score=35.63 Aligned_cols=83 Identities=14% Similarity=0.046 Sum_probs=51.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-cccccccceEEEecChhhhhhc---CC-
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-TSKAEKGLVKLFNMCHSRMEEI---VP- 169 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~~~~~l~~~---~~- 169 (267)
+++||=.|++ |.++..+++.+-. .+.+|+.++.+++.++.+.+.+... + .++.++..|..+.... ..
T Consensus 7 ~k~vlVTGas-~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 78 (263)
T 3ai3_A 7 GKVAVITGSS-SGIGLAIAEGFAK--EGAHIVLVARQVDRLHEAARSLKEKFG-----VRVLEVAVDVATPEGVDAVVES 78 (263)
T ss_dssp TCEEEEESCS-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHHC-----CCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCC-chHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHHH
Confidence 5678877755 5566666654422 1579999999988777666555442 2 3566776665543221 10
Q ss_pred ---CCCcEEEEEEeCCCCC
Q 041272 170 ---KSTAVRLVAFNLGYLP 185 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~lp 185 (267)
....+|+++.+.+...
T Consensus 79 ~~~~~g~id~lv~~Ag~~~ 97 (263)
T 3ai3_A 79 VRSSFGGADILVNNAGTGS 97 (263)
T ss_dssp HHHHHSSCSEEEECCCCCC
T ss_pred HHHHcCCCCEEEECCCCCC
Confidence 1125899999987643
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=87.28 E-value=3.3 Score=34.14 Aligned_cols=85 Identities=12% Similarity=-0.001 Sum_probs=55.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+++||=-|++ |.++..+++.+-. -+.+|+.+|.+++.++...+.++..+ .++.++..|..+.... .
T Consensus 25 ~gk~~lVTGas-~gIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~d~~~v~~~~~~ 96 (271)
T 4ibo_A 25 GGRTALVTGSS-RGLGRAMAEGLAV--AGARILINGTDPSRVAQTVQEFRNVG-----HDAEAVAFDVTSESEIIEAFAR 96 (271)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHH--TTCEEEECCSCHHHHHHHHHHHHHTT-----CCEEECCCCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHHH
Confidence 46678877754 5566665554422 15799999999998888777776644 4677776666554321 1
Q ss_pred --CCCCcEEEEEEeCCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp~ 186 (267)
.....+|+++.|.+....
T Consensus 97 ~~~~~g~iD~lv~nAg~~~~ 116 (271)
T 4ibo_A 97 LDEQGIDVDILVNNAGIQFR 116 (271)
T ss_dssp HHHHTCCCCEEEECCCCCCC
T ss_pred HHHHCCCCCEEEECCCCCCC
Confidence 112368999999876443
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=87.25 E-value=1.6 Score=35.89 Aligned_cols=85 Identities=8% Similarity=-0.024 Sum_probs=53.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+++||=-|++. .++..+++.+-. -+.+|+.+|.+++.++.+.+.+.... ..++.++..|..+.... .
T Consensus 19 ~~k~vlVTGas~-gIG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~Dv~~~~~v~~~~~~ 91 (266)
T 4egf_A 19 DGKRALITGATK-GIGADIARAFAA--AGARLVLSGRDVSELDAARRALGEQF----GTDVHTVAIDLAEPDAPAELARR 91 (266)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHH----CCCEEEEECCTTSTTHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHH
Confidence 356788777654 455555554322 15799999999998887777665421 25677777666554321 1
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.|.+...
T Consensus 92 ~~~~~g~id~lv~nAg~~~ 110 (266)
T 4egf_A 92 AAEAFGGLDVLVNNAGISH 110 (266)
T ss_dssp HHHHHTSCSEEEEECCCCC
T ss_pred HHHHcCCCCEEEECCCcCC
Confidence 11125899999987644
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=87.24 E-value=1.8 Score=38.19 Aligned_cols=48 Identities=15% Similarity=0.085 Sum_probs=35.5
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCC----CcEEEEEeCChHHHHHHHHHHhh
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESS----AGCVYGLDIQSEALKSTSSLLDK 144 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p----~~~v~giD~s~~~i~~a~~~~~~ 144 (267)
-.|+|+|.|+|.++.-+.+.+.. .| ..+++.||+|+...+.=++++..
T Consensus 82 ~~ivElGaG~GtLa~diL~~l~~-~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 133 (387)
T 1zkd_A 82 LRLIEIGPGRGTMMADALRALRV-LPILYQSLSVHLVEINPVLRQKQQTLLAG 133 (387)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTT-SHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred cEEEEECCCcchHHHHHHHHHHh-CCccccccEEEEEecCHHHHHHHHHHhcC
Confidence 47999999999999888765421 11 35899999999887755555543
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.19 E-value=1.6 Score=36.12 Aligned_cols=86 Identities=14% Similarity=0.027 Sum_probs=52.3
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C---
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V--- 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~--- 168 (267)
+++||=.|+ +|.++..+++.+-. .+.+|+.+|.+++.++...+.+...+. ...++.++..|..+.... .
T Consensus 6 ~k~vlVTGa-s~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (280)
T 1xkq_A 6 NKTVIITGS-SNGIGRTTAILFAQ--EGANVTITGRSSERLEETRQIILKSGV--SEKQVNSVVADVTTEDGQDQIINST 80 (280)
T ss_dssp TCEEEETTC-SSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTTTC--CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEECC-CChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHcCC--CCcceEEEEecCCCHHHHHHHHHHH
Confidence 567777775 45566666654422 157999999999887776666554330 011677777666554321 1
Q ss_pred -CCCCcEEEEEEeCCCCC
Q 041272 169 -PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.+.+...
T Consensus 81 ~~~~g~iD~lv~nAg~~~ 98 (280)
T 1xkq_A 81 LKQFGKIDVLVNNAGAAI 98 (280)
T ss_dssp HHHHSCCCEEEECCCCCC
T ss_pred HHhcCCCCEEEECCCCCC
Confidence 11125899999987643
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=87.18 E-value=3.3 Score=34.31 Aligned_cols=84 Identities=11% Similarity=-0.047 Sum_probs=49.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCCh-HHHHHHHHHHh-hccccccccceEEEecChhh----hhh-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS-EALKSTSSLLD-KTTSKAEKGLVKLFNMCHSR----MEE- 166 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~-~~i~~a~~~~~-~~~~~~~~~~v~~~~~~~~~----l~~- 166 (267)
.+++||=.|++ |.++..+++.+-. -+.+|+.++.++ +.++...+.+. ..+ .++.++..|..+ ...
T Consensus 22 ~~k~~lVTGas-~gIG~aia~~L~~--~G~~V~~~~r~~~~~~~~~~~~l~~~~~-----~~~~~~~~Dv~~~~~~~~~v 93 (288)
T 2x9g_A 22 EAPAAVVTGAA-KRIGRAIAVKLHQ--TGYRVVIHYHNSAEAAVSLADELNKERS-----NTAVVCQADLTNSNVLPASC 93 (288)
T ss_dssp CCCEEEETTCS-SHHHHHHHHHHHH--HTCEEEEEESSCHHHHHHHHHHHHHHST-----TCEEEEECCCSCSTTHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHH--CCCeEEEEeCCchHHHHHHHHHHHhhcC-----CceEEEEeecCCccCCHHHH
Confidence 35678777755 5555555544321 157999999998 66666555554 222 456676666555 221
Q ss_pred --cC----CCCCcEEEEEEeCCCCC
Q 041272 167 --IV----PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 167 --~~----~~~~~~d~ii~~~~~lp 185 (267)
.. .....+|+++.+.+...
T Consensus 94 ~~~~~~~~~~~g~iD~lvnnAG~~~ 118 (288)
T 2x9g_A 94 EEIINSCFRAFGRCDVLVNNASAFY 118 (288)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCC
Confidence 11 01125899999987643
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=87.12 E-value=0.97 Score=36.84 Aligned_cols=83 Identities=14% Similarity=-0.011 Sum_probs=50.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeC-ChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cCC-
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI-QSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IVP- 169 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~-s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~~- 169 (267)
+++||=.|+ +|.++..+++.+-. .+.+|+.++. +++..+...+.+...+ .++.++..|..+... ...
T Consensus 7 ~k~vlITGa-sggiG~~~a~~l~~--~G~~V~~~~r~~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 78 (261)
T 1gee_A 7 GKVVVITGS-STGLGKSMAIRFAT--EKAKVVVNYRSKEDEANSVLEEIKKVG-----GEAIAVKGDVTVESDVINLVQS 78 (261)
T ss_dssp TCEEEETTC-SSHHHHHHHHHHHH--TTCEEEEEESSCHHHHHHHHHHHHHTT-----CEEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEeCC-CChHHHHHHHHHHH--CCCEEEEEcCCChHHHHHHHHHHHhcC-----CceEEEECCCCCHHHHHHHHHH
Confidence 567887774 56667666664422 1578999999 7776666555554433 456667666554322 111
Q ss_pred ---CCCcEEEEEEeCCCCC
Q 041272 170 ---KSTAVRLVAFNLGYLP 185 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~lp 185 (267)
....+|+++.+.+...
T Consensus 79 ~~~~~g~id~li~~Ag~~~ 97 (261)
T 1gee_A 79 AIKEFGKLDVMINNAGLEN 97 (261)
T ss_dssp HHHHHSCCCEEEECCCCCC
T ss_pred HHHHcCCCCEEEECCCCCC
Confidence 1125899999987643
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.05 E-value=1.5 Score=36.40 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=49.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+++||=.|++.| ++..+++.+-. .+.+|+.+|.+++.++.+.+.+ + .++.++..|..+.... .
T Consensus 28 ~gk~vlVTGas~g-IG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~---~-----~~~~~~~~Dv~d~~~v~~~~~~ 96 (277)
T 3gvc_A 28 AGKVAIVTGAGAG-IGLAVARRLAD--EGCHVLCADIDGDAADAAATKI---G-----CGAAACRVDVSDEQQIIAMVDA 96 (277)
T ss_dssp TTCEEEETTTTST-HHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHH---C-----SSCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHc---C-----CcceEEEecCCCHHHHHHHHHH
Confidence 3668888886655 44444443321 1579999999988776665543 2 3566666665544321 1
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.+.+...
T Consensus 97 ~~~~~g~iD~lvnnAg~~~ 115 (277)
T 3gvc_A 97 CVAAFGGVDKLVANAGVVH 115 (277)
T ss_dssp HHHHHSSCCEEEECCCCCC
T ss_pred HHHHcCCCCEEEECCCCCC
Confidence 11125899999987754
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.94 E-value=1.3 Score=36.87 Aligned_cols=83 Identities=12% Similarity=-0.024 Sum_probs=52.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+++||=.|++. .++..+++.+-. .+.+|+.+|.+++.++...+.+...+ .++.++..|..+.... .
T Consensus 7 ~gk~vlVTGas~-GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~ 78 (280)
T 3tox_A 7 EGKIAIVTGASS-GIGRAAALLFAR--EGAKVVVTARNGNALAELTDEIAGGG-----GEAAALAGDVGDEALHEALVEL 78 (280)
T ss_dssp TTCEEEESSTTS-HHHHHHHHHHHH--TTCEEEECCSCHHHHHHHHHHHTTTT-----CCEEECCCCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEECCCCCHHHHHHHHHH
Confidence 356788777654 455555544321 15799999999998887777665533 5677776666543321 1
Q ss_pred --CCCCcEEEEEEeCCCC
Q 041272 169 --PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~l 184 (267)
.....+|+++.|.+..
T Consensus 79 ~~~~~g~iD~lvnnAg~~ 96 (280)
T 3tox_A 79 AVRRFGGLDTAFNNAGAL 96 (280)
T ss_dssp HHHHHSCCCEEEECCCCC
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 1112589999998765
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=86.92 E-value=4.2 Score=36.63 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=55.4
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-------cc---ccc-ccceEEEecChh
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-------TS---KAE-KGLVKLFNMCHS 162 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-------~~---~~~-~~~v~~~~~~~~ 162 (267)
.+|.=||+|. | .++..+++. +.+|+.+|++++.++.+++..... +. ... .....+ ..
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~------G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~--- 107 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARV------GISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SS--- 107 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ES---
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cC---
Confidence 4789999876 3 333444433 468999999999988887644321 10 000 001122 21
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
++.. . ...|+|+...+. .......+++++...++||.+++
T Consensus 108 ~~~~-~---~~aDlVIeaVpe----------~~~~k~~v~~~l~~~~~~~~ii~ 147 (463)
T 1zcj_A 108 STKE-L---STVDLVVEAVFE----------DMNLKKKVFAELSALCKPGAFLC 147 (463)
T ss_dssp CGGG-G---TTCSEEEECCCS----------CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred CHHH-H---CCCCEEEEcCCC----------CHHHHHHHHHHHHhhCCCCeEEE
Confidence 2211 1 146888887421 22334678888888888887664
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=86.92 E-value=1.5 Score=36.38 Aligned_cols=84 Identities=10% Similarity=0.009 Sum_probs=53.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+.+||=.|++ |.++..+++.+-. -+.+|+.+|.+++..+.+.+.+...+ .++.++..|..+.... .
T Consensus 32 ~gk~~lVTGas-~GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~ 103 (275)
T 4imr_A 32 RGRTALVTGSS-RGIGAAIAEGLAG--AGAHVILHGVKPGSTAAVQQRIIASG-----GTAQELAGDLSEAGAGTDLIER 103 (275)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHH--TTCEEEEEESSTTTTHHHHHHHHHTT-----CCEEEEECCTTSTTHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHHHHHhcC-----CeEEEEEecCCCHHHHHHHHHH
Confidence 46678877755 5556555554422 15799999999988877777766544 5677776666543221 1
Q ss_pred -CCCCcEEEEEEeCCCCC
Q 041272 169 -PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.|.+...
T Consensus 104 ~~~~g~iD~lvnnAg~~~ 121 (275)
T 4imr_A 104 AEAIAPVDILVINASAQI 121 (275)
T ss_dssp HHHHSCCCEEEECCCCCC
T ss_pred HHHhCCCCEEEECCCCCC
Confidence 01136899999987643
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=6.4 Score=33.68 Aligned_cols=113 Identities=10% Similarity=-0.063 Sum_probs=56.5
Q ss_pred CCCEEEEecCCCChHHHHHHH---hcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLK---MVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~---~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
...+|.=+|+|. .+..+|. ..+. ..+++.+|++++.++--...+.... +....++.+..++.+++.
T Consensus 4 ~~~kI~ViGaG~--vG~~~a~~l~~~~~---~~~l~l~D~~~~k~~g~a~DL~~~~-~~~~~~v~i~~~~~~a~~----- 72 (326)
T 3pqe_A 4 HVNKVALIGAGF--VGSSYAFALINQGI---TDELVVIDVNKEKAMGDVMDLNHGK-AFAPQPVKTSYGTYEDCK----- 72 (326)
T ss_dssp SCCEEEEECCSH--HHHHHHHHHHHHTC---CSEEEEECSCHHHHHHHHHHHHHTG-GGSSSCCEEEEECGGGGT-----
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCC---CceEEEEecchHHHHHHHHHHHhcc-ccccCCeEEEeCcHHHhC-----
Confidence 356888999754 3333332 2221 1389999999877654322232211 001134454443332221
Q ss_pred CCcEEEEEEeCCCCCCCCCcee----echhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVI----TTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~----~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..|+++...+..+.+...-. ........+.+.+.+. .|+++++++..
T Consensus 73 --~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtN 123 (326)
T 3pqe_A 73 --DADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATN 123 (326)
T ss_dssp --TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSS
T ss_pred --CCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCC
Confidence 36777777654322211100 1112234455555554 79999887665
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=86.64 E-value=4.1 Score=36.86 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=58.9
Q ss_pred CCCEEEEecCCC-Ch-HHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccc---------ccceEEEecChh
Q 041272 94 KGDTVVDATCGN-GY-DTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE---------KGLVKLFNMCHS 162 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~-~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~---------~~~v~~~~~~~~ 162 (267)
..++|.=||+|. |. ++..|++. +.+|+++|++++.++..++.-........ ..++.+.. +.
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~------G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~tt-d~- 78 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI------GHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFST-DI- 78 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEEC-CH-
T ss_pred CCceEEEECcCHHHHHHHHHHHhC------CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEEC-CH-
Confidence 346888888875 32 33444443 45899999999988887764210000000 12344332 11
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
.+.. ...|+++...+.-...+.. .......++++.+.+.|++|.+++
T Consensus 79 --~~a~---~~aDvviiaVptp~~~~~~--~dl~~v~~v~~~i~~~l~~~~iVV 125 (478)
T 2y0c_A 79 --EAAV---AHGDVQFIAVGTPPDEDGS--ADLQYVLAAARNIGRYMTGFKVIV 125 (478)
T ss_dssp --HHHH---HHCSEEEECCCCCBCTTSS--BCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred --HHHh---hcCCEEEEEeCCCcccCCC--ccHHHHHHHHHHHHHhcCCCCEEE
Confidence 1111 1357777775432222221 123455778888889999877653
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=86.38 E-value=5.5 Score=35.95 Aligned_cols=86 Identities=7% Similarity=0.022 Sum_probs=53.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChH---HHHHHHHHHhhcc----ccccccceEEEecChhhhhhc
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE---ALKSTSSLLDKTT----SKAEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~---~i~~a~~~~~~~~----~~~~~~~v~~~~~~~~~l~~~ 167 (267)
.++||=.| |+|.++..+++.+.. .+.+|++++.++. ..+...+.++... ......++.++.+|..+...+
T Consensus 150 ~~~VLVTG-atG~iG~~l~~~L~~--~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 226 (508)
T 4f6l_B 150 LGNTLLTG-ATGFLGAYLIEALQG--YSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV 226 (508)
T ss_dssp CEEEEESC-TTSHHHHHHHHHTBT--TEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred CCeEEEEC-CccchHHHHHHHHHh--cCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence 35677666 689999999988744 2578999998876 3333333332210 000135788888777664443
Q ss_pred CCCCCcEEEEEEeCCCC
Q 041272 168 VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~l 184 (267)
. ....+|+|+.+.+..
T Consensus 227 ~-~~~~~D~Vih~Aa~~ 242 (508)
T 4f6l_B 227 V-LPENMDTIIHAGART 242 (508)
T ss_dssp C-CSSCCSEEEECCCC-
T ss_pred C-CccCCCEEEECCcee
Confidence 3 334789998886654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 267 | ||||
| d1i1na_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 1e-07 | |
| d1wg8a2 | 182 | c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransf | 1e-06 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 2e-06 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 2e-06 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 2e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 7e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.001 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 0.001 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 0.002 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 0.002 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 0.003 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 0.003 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 0.003 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.003 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 0.004 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 0.004 |
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 1e-07
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 22/170 (12%)
Query: 65 TPLPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGC 124
+P + + +S + A + + +G +D G+G T +MV G
Sbjct: 47 SPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGC---TGK 103
Query: 125 VYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYL 184
V G+D E + + N+ + + + +GY
Sbjct: 104 VIGIDHIKELVD-----------DSVN------NVRKDDPTLLSSGRVQLVVGDGRMGYA 146
Query: 185 PGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVE 234
I + +A L PGG +++ VG GG + LE +
Sbjct: 147 EEAPYDAIHVGAAAPVVPQALIDQLKPGGR--LILPVGPAGGNQMLEQYD 194
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Score = 45.5 bits (107), Expect = 1e-06
Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 16/135 (11%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
VR G VDAT G +L+ G V GLD EA+ L
Sbjct: 16 VRPGGVYVDATLGGAGHARGILERG------GRVIGLDQDPEAVARAKGLHLPG------ 63
Query: 152 GLVKLFNMCHSRMEEIVPKS--TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
+ + ++ + V + +LG K LE A +L
Sbjct: 64 --LTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVL 121
Query: 210 IPGGLISMVVYVGHP 224
PGG + ++ +
Sbjct: 122 APGGRLVVIAFHSLE 136
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 2e-06
Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 21/134 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE----ALKSTSSLLDKTTS 147
+ GDTV++A G+G +L + K V + G V +++ + A K+ D
Sbjct: 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQ---GRVISFEVRKDHHDLAKKNYKHWRDSWKL 152
Query: 148 KAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAER 207
+ + H + ++ D + L
Sbjct: 153 SHVEEWPDNVDFIHKDISGATEDIKSLTF-----------DAVALDMLNPHV-TLPVFYP 200
Query: 208 ILIPGGLISMVVYV 221
L GG+ VYV
Sbjct: 201 HLKHGGVC--AVYV 212
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.5 bits (107), Expect = 2e-06
Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 22/150 (14%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ G +V+ +G + +V G ++G++ L+ + E+
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGW---EGKIFGIEFSPRVLR-------ELVPIVEE 120
Query: 152 -GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
+ ++ EE V ++ + K+ ++ AE L
Sbjct: 121 RRNIVPILGDATKPEEYRALVPKVDVIFE-----------DVAQPTQAKILIDNAEVYLK 169
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSL 240
GG + V +E E V
Sbjct: 170 RGGYGMIAVKSRSIDVTKEPEQVFREVERE 199
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.7 bits (100), Expect = 2e-05
Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 36/166 (21%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ G V++A G+G TL +L+ V G V + +++ + A +
Sbjct: 94 IFPGARVLEAGAGSGALTLSLLRAVGPA---GQVISYEQRADHAE-----------HARR 139
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+ + +V + G + L+A R+L+
Sbjct: 140 NVSGCYGQPPDNWRLVVSD-------LADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVA 192
Query: 212 GGLISMVVYVGH-------------PGGREELEAVEAFARSLSVDD 244
GG++ +VYV E A E R +V
Sbjct: 193 GGVL--MVYVATVTQLSRIVEALRAKQCWTEPRAWETLQRGWNVVG 236
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 37.6 bits (86), Expect = 7e-04
Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 29/162 (17%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
R V+D G G+ L V + G+D E ++ + + ++ +
Sbjct: 14 CRAEHRVLDIGAGAGHTALAFSPYVQE------CIGVDATKEMVE-----VASSFAQEKG 62
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
F + S + + + K+ + R+L
Sbjct: 63 VENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKA-----------VREVARVLKQ 111
Query: 212 GG--LISMVVYVGHPGGREELEAVEAF-----ARSLSVDDWI 246
G L+ P E + + R S+ +W
Sbjct: 112 DGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQ 153
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 37.0 bits (85), Expect = 0.001
Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALK 136
+R G +++ G+G + +L + + G + ++ + LK
Sbjct: 83 LRPGMDILEVGVGSGNMSSYILYALNGK---GTLTVVERDEDNLK 124
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.8 bits (84), Expect = 0.001
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 13/131 (9%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE-- 150
V+D CG G D++M+++ V +D + LK +
Sbjct: 55 HGCHRVLDVACGTGVDSIMLVEEGFS------VTSVDASDKMLKYALKERWNRRKEPAFD 108
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFN-LGYLPGGDKSVITTSETTKMALEAAERIL 209
K +++ N + + N +LP ++AL+ ++
Sbjct: 109 KWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQ----SEHRLALKNIASMV 164
Query: 210 IPGGLISMVVY 220
PGGL+ +
Sbjct: 165 RPGGLLVIDHR 175
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 36.2 bits (83), Expect = 0.002
Identities = 5/45 (11%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALK 136
+R + V+ +G + +V + +Y ++ ++ +
Sbjct: 54 LRGDERVLYLGAASGTTVSHLADIVDEGI----IYAVEYSAKPFE 94
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 18/124 (14%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ K V+D CG G ++ K A + V G+D ++
Sbjct: 33 IFKDKVVLDVGCGTGILSMFAAKAGAKK-----VLGVDQSEILYQA-------MDIIRLN 80
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
L + ++EE+ V ++ + L A + L
Sbjct: 81 KLEDTITLIKGKIEEVHLPVEKVDVIISEWMG------YFLLFESMLDSVLYAKNKYLAK 134
Query: 212 GGLI 215
GG +
Sbjct: 135 GGSV 138
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 36.1 bits (82), Expect = 0.003
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAL 135
+ ++GD+V+D CG G D L + G YG+DI ++
Sbjct: 19 RLYTKRGDSVLDLGCGKGGDLLKYERA-----GIGEYYGVDIAEVSI 60
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 35.9 bits (82), Expect = 0.003
Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 30/160 (18%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALK------STSSLLDKT 145
V++GD ++D G+G ++ + V G V+ + + E K + L+++
Sbjct: 101 VKEGDRIIDTGVGSGAMCAVLARAVGSS---GKVFAYEKREEFAKLAESNLTKWGLIERV 157
Query: 146 TSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALE 203
T K + VP + L GG + T+ + L+
Sbjct: 158 TIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEA--LKGGGRFATVCPTTNQVQETLK 215
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVD 243
+ +E E+ R
Sbjct: 216 KLQE-----------------LPFIRIEVWESLFRPYKPV 238
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 35.9 bits (82), Expect = 0.003
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 25/126 (19%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V + + VVD G G+ +L + + V ++ K L++
Sbjct: 103 KVAKPDELVVDMFAGIGHLSLPIAVYGKAK-----VIAIEKDPYTFK---FLVENIHLNK 154
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
+ + +NM + D+ ++ T + A I
Sbjct: 155 VEDRMSAYNMD-----------------NRDFPGENIADRILMGYVVRTHEFIPKALSIA 197
Query: 210 IPGGLI 215
G +I
Sbjct: 198 KDGAII 203
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 35.5 bits (81), Expect = 0.003
Identities = 13/144 (9%), Positives = 39/144 (27%), Gaps = 21/144 (14%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++ ++ G + + VY ++ ++ LLD +
Sbjct: 72 IKRDSKILYLGASAGTTPSHVADIADKGI----VYAIEYAPRIMR---ELLDACAERENI 124
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+ IV K + + ++ ++ A+ L
Sbjct: 125 IPILGDANKPQEYANIVEKVDVIY--------------EDVAQPNQAEILIKNAKWFLKK 170
Query: 212 GGLISMVVYVGHPGGREELEAVEA 235
GG + + ++ + +
Sbjct: 171 GGYGMIAIKARSIDVTKDPKEIFK 194
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 35.1 bits (80), Expect = 0.004
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 11/130 (8%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG 152
++D T G G + +L+ + G+D+ SE L+ + + K
Sbjct: 22 EDEKIILDCTVGEGGHSRAILEHCPG----CRIIGIDVDSEVLR-----IAEEKLKEFSD 72
Query: 153 LVKLFNMCHSRMEEIVPK--STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V LF + + + ++ V + +LG K E K L+ AE +L
Sbjct: 73 RVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLN 132
Query: 211 PGGLISMVVY 220
PGG I ++ +
Sbjct: 133 PGGRIVVISF 142
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 35.4 bits (80), Expect = 0.004
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAL 135
++ + V+D G G+ V V D+ + L
Sbjct: 13 LKGNEEVLDVATGGGHVANAFAPFVKK------VVAFDLTEDIL 50
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 267 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.84 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.83 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.82 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.8 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.8 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.8 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.8 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.79 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.79 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.78 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.78 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.77 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.77 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.75 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.74 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.74 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.74 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.74 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.73 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.73 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.73 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.73 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.72 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.72 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.71 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.71 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.71 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.71 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.71 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.71 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.7 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.7 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.7 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.68 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.68 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.68 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.68 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.68 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.67 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.67 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.66 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.64 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.64 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.62 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.61 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.61 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.6 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.6 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.58 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.58 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.56 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.56 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.56 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.55 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.54 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.53 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.52 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.52 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.49 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.49 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.46 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.45 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.42 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.39 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.39 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.39 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.37 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.33 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.3 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.29 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 99.24 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.19 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.13 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 99.12 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.12 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.06 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.01 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.99 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.97 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.97 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.9 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.88 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.86 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.86 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.86 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.85 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.85 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.83 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.82 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.8 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.79 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.72 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.71 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.68 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.65 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.62 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.6 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.59 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.5 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.46 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 98.28 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 98.22 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 98.2 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 98.16 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 98.09 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 98.06 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 98.01 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.94 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.94 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.93 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.87 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.78 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.77 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.68 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.61 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.59 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.56 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.54 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.48 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.38 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.35 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.3 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.27 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.26 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 97.19 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.16 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.14 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.11 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.85 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.67 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.59 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.5 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.47 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.05 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.04 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.92 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.82 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.77 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.42 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.35 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.2 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.07 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.96 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.79 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.78 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 94.62 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 94.32 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 93.83 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.69 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.55 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.39 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.37 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 93.31 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 93.17 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 93.16 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.03 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 92.88 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.63 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 92.49 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 92.18 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 92.08 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 92.02 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 91.89 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 91.69 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 91.57 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 91.2 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.92 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 90.9 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 90.5 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 90.5 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 90.46 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 90.4 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 90.06 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 89.69 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.36 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 89.22 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 88.91 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 88.89 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 88.56 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 88.33 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 87.94 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 87.83 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 87.32 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 87.25 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 86.87 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 86.63 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 86.5 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 86.41 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 86.3 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 86.11 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 86.01 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 85.56 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 85.1 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 85.02 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 84.66 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 84.34 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 83.61 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 83.55 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 83.46 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 83.37 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 83.03 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 82.91 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 82.85 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 82.44 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 82.37 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 82.0 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 81.5 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 81.2 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 81.19 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 80.46 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 80.26 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 80.08 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.84 E-value=2.1e-20 Score=154.55 Aligned_cols=113 Identities=15% Similarity=0.164 Sum_probs=95.8
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...+++|++|||||||+|.++..+++. ..+|+|||+|+.|++.|++++...+ ..++.+++++..+ ..
T Consensus 11 ~~~~~~~~rILDiGcGtG~~~~~la~~------~~~v~gvD~S~~~l~~A~~~~~~~~----~~~~~~~~~d~~~---~~ 77 (234)
T d1xxla_ 11 TAECRAEHRVLDIGAGAGHTALAFSPY------VQECIGVDATKEMVEVASSFAQEKG----VENVRFQQGTAES---LP 77 (234)
T ss_dssp HHTCCTTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHHT----CCSEEEEECBTTB---CC
T ss_pred HhCCCCCCEEEEeCCcCcHHHHHHHHh------CCeEEEEeCChhhhhhhhhhhcccc----ccccccccccccc---cc
Confidence 346899999999999999999999987 3689999999999999999998877 5789999877654 33
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
.++.+||+|++. .++++.+++.++++++.++|||||++++.++...
T Consensus 78 ~~~~~fD~v~~~---------~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~ 123 (234)
T d1xxla_ 78 FPDDSFDIITCR---------YAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP 123 (234)
T ss_dssp SCTTCEEEEEEE---------SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred ccccccceeeee---------ceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence 456689999998 4566667788999999999999999999876443
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.83 E-value=1.8e-20 Score=154.22 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=96.9
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
+.+....++++++|||||||+|.++..+++. +.+|+|+|+|++|++.|+++++..+ ..++++++++..++
T Consensus 6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~i~~A~~~~~~~~----~~~i~~~~~d~~~l 75 (231)
T d1vl5a_ 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPF------VKKVVAFDLTEDILKVARAFIEGNG----HQQVEYVQGDAEQM 75 (231)
T ss_dssp HHHHHHTCCSCCEEEEETCTTCHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCC-CC
T ss_pred HHHHhcCCCCcCEEEEecccCcHHHHHHHHh------CCEEEEEECCHHHHhhhhhcccccc----cccccccccccccc
Confidence 3333457899999999999999999999987 4689999999999999999998877 67899998776554
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..++.+||+|++. .++++.+++.++++++.++|||||++++.++..
T Consensus 76 ---~~~~~~fD~v~~~---------~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 76 ---PFTDERFHIVTCR---------IAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp ---CSCTTCEEEEEEE---------SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ---ccccccccccccc---------ccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3345689999998 466667778899999999999999999987643
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=1.6e-19 Score=148.32 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=109.5
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...++||++|||+|||+|..+..+|+.+|+ +++|+|+|+++.|++.++++++.. .++..+..+......+.
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~---~G~V~aVD~s~~~l~~a~~~a~~~------~~~~~i~~d~~~~~~~~ 138 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGW---EGKIFGIEFSPRVLRELVPIVEER------RNIVPILGDATKPEEYR 138 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHCT---TSEEEEEESCHHHHHHHHHHHSSC------TTEEEEECCTTCGGGGT
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhCC---CCEEEEEeCcHHHHHHHHHHHHhc------CCceEEEEECCCccccc
Confidence 345789999999999999999999999976 799999999999999999988763 46777777776666655
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (267)
.....+|+++.+++. ++....+++++.+.|||||+++++............+.+.+....+...+|.++
T Consensus 139 ~~~~~vD~i~~d~~~-----------~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~ii 207 (227)
T d1g8aa_ 139 ALVPKVDVIFEDVAQ-----------PTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVI 207 (227)
T ss_dssp TTCCCEEEEEECCCS-----------TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred ccccceEEEEEEccc-----------cchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 445579999888432 455678999999999999999998765443333333333344444445578777
Q ss_pred EEeeec
Q 041272 249 KFQMLN 254 (267)
Q Consensus 249 ~~~~~~ 254 (267)
+...+.
T Consensus 208 e~i~L~ 213 (227)
T d1g8aa_ 208 ERLNLE 213 (227)
T ss_dssp EEEECT
T ss_pred EEEcCC
Confidence 654443
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=2.4e-19 Score=149.22 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=93.0
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+++|++|||||||+|..+..+++.. +.+|+|||+|+.|++.|++++...+ ..++++++.++..++ .
T Consensus 29 ~~l~pg~~VLDiGCG~G~~~~~la~~~-----~~~v~GvD~s~~~~~~ar~~~~~~g---l~~~v~~~~~d~~~~---~- 96 (245)
T d1nkva_ 29 LRMKPGTRILDLGSGSGEMLCTWARDH-----GITGTGIDMSSLFTAQAKRRAEELG---VSERVHFIHNDAAGY---V- 96 (245)
T ss_dssp TCCCTTCEEEEETCTTCHHHHHHHHHT-----CCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCCTTC---C-
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHhc-----CCEEEEEecccchhhHHHHHHHHhh---ccccchhhhhHHhhc---c-
Confidence 368899999999999999999999875 3699999999999999999999887 456799998776553 2
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+.+||+|++. ..+++.++..++++++.++|||||++++...
T Consensus 97 ~~~~fD~v~~~---------~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 97 ANEKCDVAACV---------GATWIAGGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp CSSCEEEEEEE---------SCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ccCceeEEEEE---------ehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence 34589999988 3455566678999999999999999999765
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=3.7e-19 Score=145.40 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=91.2
Q ss_pred hhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh
Q 041272 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR 163 (267)
Q Consensus 84 ~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (267)
.+.++...++++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|++++...+ .++.++..+..+
T Consensus 27 ~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~------~~~v~giD~S~~~i~~ak~~~~~~~-----~~~~~~~~d~~~ 95 (226)
T d1ve3a1 27 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDY------GFEVVGVDISEDMIRKAREYAKSRE-----SNVEFIVGDARK 95 (226)
T ss_dssp HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTT-----CCCEEEECCTTS
T ss_pred HHHHHHHhcCCCCEEEEECCCcchhhhhHhhh------hcccccccccccchhhhhhhhcccc-----cccccccccccc
Confidence 34455556788999999999999999999986 4799999999999999999988755 456777665544
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+ ..++.+||+|++.. ++++ ..+..++++++.++|||||++++...
T Consensus 96 l---~~~~~~fD~I~~~~---------~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 96 L---SFEDKTFDYVIFID---------SIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp C---CSCTTCEEEEEEES---------CGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c---cccCcCceEEEEec---------chhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 3 34456899999883 4443 34677899999999999999988765
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.80 E-value=5.4e-19 Score=143.67 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=103.1
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++||++|||+|||+|..+..+|+.++. ++|+|||+|+.|++.|+++++.. .|+.++..+..+......
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~----g~V~gvDis~~~i~~a~~~a~~~------~ni~~i~~d~~~~~~~~~ 121 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDE----GIIYAVEYSAKPFEKLLELVRER------NNIIPLLFDASKPWKYSG 121 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTT----SEEEEECCCHHHHHHHHHHHHHC------SSEEEECSCTTCGGGTTT
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccC----CeEEEEeCCHHHHHHHHHHhhcc------CCceEEEeeccCcccccc
Confidence 45789999999999999999999999754 79999999999999999998773 588999888776655443
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChh-hHHHHHHHHHhCCCCceEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGRE-ELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 248 (267)
....+|+++.+++ ++.....+++++.+.|||||++++........... ...........+. .+|.+.
T Consensus 122 ~~~~vd~v~~~~~-----------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~-~gf~i~ 189 (209)
T d1nt2a_ 122 IVEKVDLIYQDIA-----------QKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEME-GDFKIV 189 (209)
T ss_dssp TCCCEEEEEECCC-----------STTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH-TTSEEE
T ss_pred ccceEEEEEeccc-----------ChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHH-cCCEEE
Confidence 3346777766632 24556789999999999999999887532211111 1122222222222 568877
Q ss_pred EEeeecC
Q 041272 249 KFQMLNR 255 (267)
Q Consensus 249 ~~~~~~~ 255 (267)
....+..
T Consensus 190 E~i~L~P 196 (209)
T d1nt2a_ 190 KHGSLMP 196 (209)
T ss_dssp EEEECTT
T ss_pred EEEccCC
Confidence 7555543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.80 E-value=8.7e-19 Score=143.92 Aligned_cols=121 Identities=15% Similarity=0.164 Sum_probs=93.6
Q ss_pred HHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 82 IAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 82 ~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
+....++...++++.+|||+|||+|..+..+++.... |+.+|+|+|+|+.|++.|+++++..+ ...++++..++.
T Consensus 27 ~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~--~~~~v~giD~S~~ml~~A~~~~~~~~---~~~~~~~~~~d~ 101 (225)
T d1im8a_ 27 TAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQ--PNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDI 101 (225)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCC--SSCEEEEECSCHHHHHHHHHHHHTSC---CSSCEEEECSCT
T ss_pred HHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcC--CCCceEEeCCCHHHHHHHHHHhHhhc---ccchhhhccchh
Confidence 3444555566889999999999999999999987643 57899999999999999999998765 356677776554
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
. +... ..+|++++.. +.+ ..++..++++++++.|||||.+++.+..
T Consensus 102 ~---~~~~--~~~d~i~~~~---------~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 102 R---HVEI--KNASMVILNF---------TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp T---TCCC--CSEEEEEEES---------CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred h---cccc--ccceeeEEee---------eccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 3 3322 3578887773 333 3467789999999999999999998764
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.79 E-value=2.1e-18 Score=142.01 Aligned_cols=145 Identities=8% Similarity=0.103 Sum_probs=107.7
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+++|++|||+|||+|..+..+|+..+ ++.|+|||+|+.|++.+++++... .++..+..+..+......
T Consensus 70 l~ikpG~~VLDlGcGsG~~~~~la~~~~----~g~V~aVDiS~~~i~~a~~~a~~~------~ni~~i~~d~~~~~~~~~ 139 (230)
T d1g8sa_ 70 MPIKRDSKILYLGASAGTTPSHVADIAD----KGIVYAIEYAPRIMRELLDACAER------ENIIPILGDANKPQEYAN 139 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTT----TSEEEEEESCHHHHHHHHHHTTTC------TTEEEEECCTTCGGGGTT
T ss_pred CCCCCCCEEEEeCEEcCHHHHHHHHhCC----CCEEEEEeCcHHHHHHHHHHHhhh------cccceEEEeeccCccccc
Confidence 3578999999999999999999999753 589999999999999999988763 467777777766665554
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCCh-hhHHHHHHHHHhCCCCceEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGR-EELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 248 (267)
...++|+++.+ .++.++...+++++.+.|||||.+++++........ ......++..+.+...+|.++
T Consensus 140 ~~~~v~~i~~~-----------~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~iv 208 (230)
T d1g8sa_ 140 IVEKVDVIYED-----------VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIV 208 (230)
T ss_dssp TCCCEEEEEEC-----------CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEE
T ss_pred ccceeEEeecc-----------ccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 44456666655 334566788999999999999999998765432221 122334455566666789887
Q ss_pred EEeeecC
Q 041272 249 KFQMLNR 255 (267)
Q Consensus 249 ~~~~~~~ 255 (267)
....+..
T Consensus 209 e~idL~p 215 (230)
T d1g8sa_ 209 DEVDIEP 215 (230)
T ss_dssp EEEECTT
T ss_pred EEecCCC
Confidence 7666544
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.79 E-value=6.2e-19 Score=149.68 Aligned_cols=112 Identities=11% Similarity=0.133 Sum_probs=94.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++++|||||||+|.++..|+++. +.+|+|||+|+.+++.|++++...+ +..++++++++..++ ..+
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~i~~a~~~~~~~g---l~~~v~~~~~d~~~l---~~~ 132 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKF-----GVSIDCLNIAPVQNKRNEEYNNQAG---LADNITVKYGSFLEI---PCE 132 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHHT---CTTTEEEEECCTTSC---SSC
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccC-----CcEEEEEeccchhhhhhhccccccc---ccccccccccccccc---ccc
Confidence 47899999999999999999999875 3689999999999999999999877 457899998776554 334
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+.+||+|++. .++++.+++.++++++.++|||||++++.++..
T Consensus 133 ~~sfD~V~~~---------~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 175 (282)
T d2o57a1 133 DNSYDFIWSQ---------DAFLHSPDKLKVFQECARVLKPRGVMAITDPMK 175 (282)
T ss_dssp TTCEEEEEEE---------SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ccccchhhcc---------chhhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 5689999988 355556677899999999999999999987643
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=2.1e-18 Score=143.95 Aligned_cols=139 Identities=18% Similarity=0.168 Sum_probs=101.8
Q ss_pred hHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe
Q 041272 79 LITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158 (267)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~ 158 (267)
..++.....+...+++|++|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++|++.++ -++++++
T Consensus 105 ~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~------g~~V~gvDis~~av~~A~~na~~n~-----~~~~~~~ 173 (254)
T d2nxca1 105 ETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL------GGKALGVDIDPMVLPQAEANAKRNG-----VRPRFLE 173 (254)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCGGGHHHHHHHHHHTT-----CCCEEEE
T ss_pred chhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc------CCEEEEEECChHHHHHHHHHHHHcC-----CceeEEe
Confidence 3445555566667889999999999999999988875 4789999999999999999999987 3456777
Q ss_pred cChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHH
Q 041272 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFAR 238 (267)
Q Consensus 159 ~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 238 (267)
++..+.. + ..+||+|++|.. .....++++++.++|||||+++++.... .+...+.+.++
T Consensus 174 ~d~~~~~---~-~~~fD~V~ani~------------~~~l~~l~~~~~~~LkpGG~lilSgil~-----~~~~~v~~~~~ 232 (254)
T d2nxca1 174 GSLEAAL---P-FGPFDLLVANLY------------AELHAALAPRYREALVPGGRALLTGILK-----DRAPLVREAMA 232 (254)
T ss_dssp SCHHHHG---G-GCCEEEEEEECC------------HHHHHHHHHHHHHHEEEEEEEEEEEEEG-----GGHHHHHHHHH
T ss_pred ccccccc---c-ccccchhhhccc------------cccHHHHHHHHHHhcCCCcEEEEEecch-----hhHHHHHHHHH
Confidence 6654432 1 347999999842 2334678899999999999999986632 23344444444
Q ss_pred hCCCCceEEEEEee
Q 041272 239 SLSVDDWICCKFQM 252 (267)
Q Consensus 239 ~l~~~~~~~~~~~~ 252 (267)
. .+|.+.....
T Consensus 233 ~---~Gf~~~~~~~ 243 (254)
T d2nxca1 233 G---AGFRPLEEAA 243 (254)
T ss_dssp H---TTCEEEEEEE
T ss_pred H---CCCEEEEEEE
Confidence 3 4576665443
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=5.2e-18 Score=142.74 Aligned_cols=140 Identities=11% Similarity=0.099 Sum_probs=104.2
Q ss_pred hhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh
Q 041272 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR 163 (267)
Q Consensus 84 ~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (267)
....+......+.+|||+|||+|.+++.++...+ +.+|+++|+|+.+++.|++|+++++ ..+++++++|..
T Consensus 98 v~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p----~~~v~avDis~~Al~~A~~Na~~~~----~~~v~~~~~d~~- 168 (274)
T d2b3ta1 98 VEQALARLPEQPCRILDLGTGTGAIALALASERP----DCEIIAVDRMPDAVSLAQRNAQHLA----IKNIHILQSDWF- 168 (274)
T ss_dssp HHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT----TSEEEEECSSHHHHHHHHHHHHHHT----CCSEEEECCSTT-
T ss_pred hhhHhhhhcccccceeeeehhhhHHHHHHHhhCC----cceeeeccchhHHHhHHHHHHHHhC----cccceeeecccc-
Confidence 3333333345667999999999999999999864 5899999999999999999999988 468999986653
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCcee-----ec-----------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCCh
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVI-----TT-----------SETTKMALEAAERILIPGGLISMVVYVGHPGGR 227 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~-----~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 227 (267)
+... +.+||+|++|+||+|..+.... +. .....++++++.++|+|||.+++....
T Consensus 169 --~~~~-~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~------ 239 (274)
T d2b3ta1 169 --SALA-GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW------ 239 (274)
T ss_dssp --GGGT-TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS------
T ss_pred --cccC-CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc------
Confidence 3222 3489999999999997653211 11 134578999999999999999885431
Q ss_pred hhHHHHHHHHHhCC
Q 041272 228 EELEAVEAFARSLS 241 (267)
Q Consensus 228 ~~~~~~~~~~~~l~ 241 (267)
.....+.+++....
T Consensus 240 ~q~~~v~~~l~~~g 253 (274)
T d2b3ta1 240 QQGEAVRQAFILAG 253 (274)
T ss_dssp SCHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHCC
Confidence 23455666666544
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.77 E-value=9.6e-19 Score=145.46 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=102.5
Q ss_pred hhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh
Q 041272 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR 163 (267)
Q Consensus 84 ~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (267)
...+....++||++|||+|||+|.++..||+.+++ .++|+++|+++++++.|++|+++.+ ...++++..+|..+
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~---~g~V~~vD~~e~~~~~A~~n~~~~~---~~~nv~~~~~Di~~ 148 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNG---KGTLTVVERDEDNLKKAMDNLSEFY---DIGNVRTSRSDIAD 148 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTT---SSEEEEECSCHHHHHHHHHHHHTTS---CCTTEEEECSCTTT
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHhc---CCCceEEEEeeeec
Confidence 34455567899999999999999999999998865 6899999999999999999998865 36789999866543
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCC
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVD 243 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 243 (267)
..+ +..||.|+.+++ ++.++++++.++|||||++++... ..+++.+..+.+...
T Consensus 149 ---~~~-~~~fD~V~ld~p--------------~p~~~l~~~~~~LKpGG~lv~~~P--------~i~Qv~~~~~~l~~~ 202 (250)
T d1yb2a1 149 ---FIS-DQMYDAVIADIP--------------DPWNHVQKIASMMKPGSVATFYLP--------NFDQSEKTVLSLSAS 202 (250)
T ss_dssp ---CCC-SCCEEEEEECCS--------------CGGGSHHHHHHTEEEEEEEEEEES--------SHHHHHHHHHHSGGG
T ss_pred ---ccc-cceeeeeeecCC--------------chHHHHHHHHHhcCCCceEEEEeC--------CcChHHHHHHHHHHC
Confidence 332 457999999842 234789999999999999987655 235566777777777
Q ss_pred ceEEE
Q 041272 244 DWICC 248 (267)
Q Consensus 244 ~~~~~ 248 (267)
+|..+
T Consensus 203 gf~~i 207 (250)
T d1yb2a1 203 GMHHL 207 (250)
T ss_dssp TEEEE
T ss_pred CCcee
Confidence 77543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.77 E-value=5.8e-18 Score=135.10 Aligned_cols=123 Identities=23% Similarity=0.182 Sum_probs=95.6
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...++++++|||+|||+|.+++.+|+. ..+|+|+|+++++++.|++|+++++ +..++++++++..+..
T Consensus 28 ~l~~~~g~~VLDiGcGsG~~s~~lA~~------~~~V~avD~~~~~l~~a~~n~~~~g---l~~~v~~~~gda~~~~--- 95 (186)
T d1l3ia_ 28 LAEPGKNDVAVDVGCGTGGVTLELAGR------VRRVYAIDRNPEAISTTEMNLQRHG---LGDNVTLMEGDAPEAL--- 95 (186)
T ss_dssp HHCCCTTCEEEEESCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHTT---CCTTEEEEESCHHHHH---
T ss_pred hcCCCCCCEEEEEECCeEccccccccc------ceEEEEecCCHHHHHHHHHHHHHcC---CCcceEEEECchhhcc---
Confidence 346789999999999999999999976 3689999999999999999999988 4579999998765553
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhC
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l 240 (267)
.+...||.++.+.+. ....++++.+.+.|||||++++... ..+......+++...
T Consensus 96 ~~~~~~D~v~~~~~~------------~~~~~~~~~~~~~LkpgG~lvi~~~-----~~e~~~~~~~~l~~~ 150 (186)
T d1l3ia_ 96 CKIPDIDIAVVGGSG------------GELQEILRIIKDKLKPGGRIIVTAI-----LLETKFEAMECLRDL 150 (186)
T ss_dssp TTSCCEEEEEESCCT------------TCHHHHHHHHHHTEEEEEEEEEEEC-----BHHHHHHHHHHHHHT
T ss_pred cccCCcCEEEEeCcc------------ccchHHHHHHHHHhCcCCEEEEEee-----ccccHHHHHHHHHHc
Confidence 233479999988421 2235789999999999999988765 223334444555543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=5.4e-18 Score=142.39 Aligned_cols=136 Identities=18% Similarity=0.137 Sum_probs=103.5
Q ss_pred HHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 82 IAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 82 ~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
+....+....+++|++|||+|||+|.++..+|+.+++ +++|+++|+++++++.|++++++.+ ...++.+...+.
T Consensus 91 d~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~---~G~V~~vD~~~~~~~~A~~~~~~~g---~~~~v~~~~~d~ 164 (266)
T d1o54a_ 91 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGS---SGKVFAYEKREEFAKLAESNLTKWG---LIERVTIKVRDI 164 (266)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTT---TCEEEEECCCHHHHHHHHHHHHHTT---CGGGEEEECCCG
T ss_pred HHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHhc---cccCcEEEeccc
Confidence 4455556667999999999999999999999999865 6899999999999999999999987 457788776553
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
.... ....+|.++.++ +++.++++++.++|||||++++.++. .+++.+..+.+.
T Consensus 165 ---~~~~-~~~~~D~V~~d~--------------p~p~~~l~~~~~~LKpGG~lv~~~P~--------~~Qv~~~~~~l~ 218 (266)
T d1o54a_ 165 ---SEGF-DEKDVDALFLDV--------------PDPWNYIDKCWEALKGGGRFATVCPT--------TNQVQETLKKLQ 218 (266)
T ss_dssp ---GGCC-SCCSEEEEEECC--------------SCGGGTHHHHHHHEEEEEEEEEEESS--------HHHHHHHHHHHH
T ss_pred ---cccc-cccceeeeEecC--------------CCHHHHHHHHHhhcCCCCEEEEEeCc--------ccHHHHHHHHHH
Confidence 2222 234799998884 23357899999999999999887751 234445555555
Q ss_pred CCceEEEE
Q 041272 242 VDDWICCK 249 (267)
Q Consensus 242 ~~~~~~~~ 249 (267)
..+|..++
T Consensus 219 ~~gF~~i~ 226 (266)
T d1o54a_ 219 ELPFIRIE 226 (266)
T ss_dssp HSSEEEEE
T ss_pred HCCceeEE
Confidence 55665433
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=1.3e-17 Score=141.33 Aligned_cols=115 Identities=13% Similarity=0.114 Sum_probs=90.2
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
+.+.+.+..+++|++|||||||+|.++..+++.. +.+|+|||+|+++++.|++++++.+ +..++.+...+..
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-----g~~v~gi~ls~~q~~~a~~~~~~~~---l~~~~~~~~~d~~ 112 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-----DVNVIGLTLSKNQHARCEQVLASID---TNRSRQVLLQGWE 112 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCGG
T ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-----ceeEEEecchHHHHHHHHHHHHhhc---cccchhhhhhhhh
Confidence 3344444568899999999999999999999886 3699999999999999999999887 4566777665443
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
++ +.+||.|++. .+..+. +....+++++.++|||||++++...
T Consensus 113 ~~------~~~fD~i~si---------~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 113 DF------AEPVDRIVSI---------EAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp GC------CCCCSEEEEE---------SCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hh------ccchhhhhHh---------hHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 22 2468888887 333332 4568999999999999999998654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=1.7e-17 Score=137.87 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=85.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..+++.+|||+|||+|..+..+++. +.+|+|||+|+.|++.|+++++..+ .++++++++..++. .+
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~------~~~v~gvD~s~~mi~~a~~~~~~~~-----~~i~~~~~d~~~l~---~~ 103 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEEMLRVARRKAKERN-----LKIEFLQGDVLEIA---FK 103 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTT-----CCCEEEESCGGGCC---CC
T ss_pred cCCCCCEEEEeCCCCCccchhhccc------ceEEEEEeecccccccccccccccc-----ccchheehhhhhcc---cc
Confidence 3456779999999999999999987 4799999999999999999998866 47899987775553 23
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..||+|++....+ .+...++..++|++++++|||||++++..
T Consensus 104 -~~fD~I~~~~~~~------~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 104 -NEFDAVTMFFSTI------MYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp -SCEEEEEECSSGG------GGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cccchHhhhhhhh------hcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 3799998753110 11234667899999999999999998754
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.74 E-value=1.2e-17 Score=138.63 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=87.7
Q ss_pred HHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh
Q 041272 86 GVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME 165 (267)
Q Consensus 86 ~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~ 165 (267)
.++...-.++.+|||+|||+|.++..+++. +.+|+|||+|+.|++.|+++++..+ .++++++++..++.
T Consensus 29 ~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~------g~~v~GvD~S~~ml~~A~~~~~~~~-----~~v~~~~~d~~~~~ 97 (246)
T d1y8ca_ 29 EKCVENNLVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENKFRSQG-----LKPRLACQDISNLN 97 (246)
T ss_dssp HHHHTTTCCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHHHHHTT-----CCCEEECCCGGGCC
T ss_pred HHHHHhCCCCCeEEEEeCcCCHHHHHHHHh------CCccEeeccchhhhhhccccccccC-----ccceeeccchhhhc
Confidence 333333345679999999999999999987 4689999999999999999988766 47899987765542
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. +.+||+|++....+ ..+.+.++..+++++++++|||||.+++...
T Consensus 98 ---~-~~~fD~i~~~~~~~-----~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 98 ---I-NRKFDLITCCLDST-----NYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp ---C-SCCEEEEEECTTGG-----GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ---c-cccccccceeeeee-----eccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 2 34799998742110 1123467788999999999999999987543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=9.6e-18 Score=137.35 Aligned_cols=141 Identities=16% Similarity=0.132 Sum_probs=101.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||||||+|..+..+++.. ..+|+|||+|+.|++.|++++...+ ..++++++++..++ ..++
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~l~~ak~~~~~~~----~~~~~f~~~d~~~~---~~~~ 125 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPL-----FREVDMVDITEDFLVQAKTYLGEEG----KRVRNYFCCGLQDF---TPEP 125 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTT-----CSEEEEEESCHHHHHHHHHHTGGGG----GGEEEEEECCGGGC---CCCS
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhc-----CCEEEEeecCHHHhhcccccccccc----cccccccccccccc---cccc
Confidence 3467899999999999999887653 3589999999999999999998866 56789998776554 3445
Q ss_pred CcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEecCCCCCh------hhHHHHHHHHHhCCCC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYVGHPGGR------EELEAVEAFARSLSVD 243 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~l~~~ 243 (267)
.+||+|++.. ++++. ++..++++++.++|||||.+++.+........ ........+.+.+...
T Consensus 126 ~~fD~I~~~~---------~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 196 (222)
T d2ex4a1 126 DSYDVIWIQW---------VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSA 196 (222)
T ss_dssp SCEEEEEEES---------CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHT
T ss_pred cccccccccc---------ccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHc
Confidence 6899999883 44433 34568999999999999999998764332110 0001123344444456
Q ss_pred ceEEEEEeee
Q 041272 244 DWICCKFQML 253 (267)
Q Consensus 244 ~~~~~~~~~~ 253 (267)
+|.+++....
T Consensus 197 Gf~ii~~~~q 206 (222)
T d2ex4a1 197 GLSLLAEERQ 206 (222)
T ss_dssp TCCEEEEEEC
T ss_pred CCEEEEEEEe
Confidence 7888776654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=1.3e-17 Score=139.52 Aligned_cols=118 Identities=20% Similarity=0.228 Sum_probs=94.7
Q ss_pred HHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 82 IAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 82 ~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
+....+....++||++|||+|||+|.++..||+.+++ +++|+++|+++++++.|++|++.... ....++.++.+|.
T Consensus 84 D~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp---~G~V~~~d~~~~~~~~Ar~n~~~~~~-~~~~nv~~~~~d~ 159 (264)
T d1i9ga_ 84 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGP---AGQVISYEQRADHAEHARRNVSGCYG-QPPDNWRLVVSDL 159 (264)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCT---TSEEEEECSCHHHHHHHHHHHHHHHT-SCCTTEEEECSCG
T ss_pred HHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCC---CcEEEEecCCHHHHHHHHHhhhhhcc-CCCceEEEEeccc
Confidence 3455555667899999999999999999999999875 79999999999999999999986420 1357888887655
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. +...++..||.|+.++ +++.+++.++.++|||||++++.++
T Consensus 160 ~---~~~~~~~~fDaV~ldl--------------p~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 160 A---DSELPDGSVDRAVLDM--------------LAPWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp G---GCCCCTTCEEEEEEES--------------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred c---cccccCCCcceEEEec--------------CCHHHHHHHHHhccCCCCEEEEEeC
Confidence 3 3333456899999984 3335889999999999999977665
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.8e-18 Score=140.02 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=85.1
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-ccccceEEEecChhhhhhc
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-AEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~ 167 (267)
...+++|++|||+|||+|+.+..||+.+++ .++|+|+|+++++++.|++++++.+.. ....++.++.+|.. ..
T Consensus 71 ~~~l~~g~~VLdiG~GsGy~ta~la~l~~~---~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~---~~ 144 (224)
T d1i1na_ 71 FDQLHEGAKALDVGSGSGILTACFARMVGC---TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR---MG 144 (224)
T ss_dssp TTTSCTTCEEEEETCTTSHHHHHHHHHHCT---TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG---GC
T ss_pred hhccCCCCeEEEecCCCCHHHHHHHHHhCC---CceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc---cc
Confidence 336789999999999999999999998875 689999999999999999999875521 12457788876653 33
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+++.+||.|+.+.. .. .+.+.+.+.|||||++++...
T Consensus 145 ~~~~~~fD~I~~~~~---------~~------~ip~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 145 YAEEAPYDAIHVGAA---------AP------VVPQALIDQLKPGGRLILPVG 182 (224)
T ss_dssp CGGGCCEEEEEECSB---------BS------SCCHHHHHTEEEEEEEEEEES
T ss_pred cchhhhhhhhhhhcc---------hh------hcCHHHHhhcCCCcEEEEEEc
Confidence 444568999998832 11 123457889999999987653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=7.9e-18 Score=139.10 Aligned_cols=112 Identities=20% Similarity=0.152 Sum_probs=87.2
Q ss_pred HHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 82 IAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 82 ~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
.....++...++++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++... .++.++.
T Consensus 30 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~~~l~~a~~~~~~----------~~~~~~~ 93 (246)
T d2avna1 30 RLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKGVK----------NVVEAKA 93 (246)
T ss_dssp HHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHTCS----------CEEECCT
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCchhccccccc------ceEEEEeeccccccccccccccc----------ccccccc
Confidence 3445555667788899999999999999999986 47999999999999999986432 1344555
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.++ ..++..||+|++.. .++++.+++.++++++.++|||||++++.+.
T Consensus 94 ~~l---~~~~~~fD~ii~~~--------~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 94 EDL---PFPSGAFEAVLALG--------DVLSYVENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp TSC---CSCTTCEEEEEECS--------SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc---ccccccccceeeec--------chhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 443 33456899998752 3555667778999999999999999998875
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.73 E-value=2.5e-17 Score=137.47 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=89.6
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE 166 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 166 (267)
+++..++++.+|||+|||+|..+..+++.- ..+|+|||+|++|++.|+++++..+ ...++.+.++|....
T Consensus 17 lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~-----~~~v~GiD~S~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~-- 86 (252)
T d1ri5a_ 17 LIRLYTKRGDSVLDLGCGKGGDLLKYERAG-----IGEYYGVDIAEVSINDARVRARNMK---RRFKVFFRAQDSYGR-- 86 (252)
T ss_dssp HHHHHCCTTCEEEEETCTTTTTHHHHHHHT-----CSEEEEEESCHHHHHHHHHHHHTSC---CSSEEEEEESCTTTS--
T ss_pred HHHHhCCCcCEEEEecccCcHHHHHHHHcC-----CCeEEEecCCHHHHHHHHHHHHhcC---CCcceEEEEcchhhh--
Confidence 445567899999999999999999998862 2589999999999999999988765 345788888665322
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeec----hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITT----SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+..||+|++.. ++++ .+....+++++.++|||||++++..+
T Consensus 87 ~~~~~~~fD~V~~~~---------~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 87 HMDLGKEFDVISSQF---------SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp CCCCSSCEEEEEEES---------CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccceEEEEcc---------eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 122345799999873 2222 35567899999999999999988776
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.72 E-value=4.2e-17 Score=138.63 Aligned_cols=123 Identities=12% Similarity=0.051 Sum_probs=91.6
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
....+.+..+++|++|||||||.|.++..+|+..+ ++|+||++|++.++.|+++++..+ +..++.+...+..
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g-----~~v~git~s~~q~~~a~~~~~~~~---l~~~v~~~~~d~~ 121 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-----VNVIGLTLSENQYAHDKAMFDEVD---SPRRKEVRIQGWE 121 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-----CEEEEEESCHHHHHHHHHHHHHSC---CSSCEEEEECCGG
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC-----cceeeccchHHHHHHHHHHHHhhc---cchhhhhhhhccc
Confidence 33344455789999999999999999999998863 799999999999999999999887 4567777664432
Q ss_pred hhhhcCCCCCcEEEEEEeC--CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 163 RMEEIVPKSTAVRLVAFNL--GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~--~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..+.+||.|++.= .+++.. ......+..+.+++++.++|||||++++.+..
T Consensus 122 ------~~~~~fD~i~sie~~eH~~~~--~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 122 ------EFDEPVDRIVSLGAFEHFADG--AGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp ------GCCCCCSEEEEESCGGGTTCC--SSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred ------ccccccceEeechhHHhcchh--hhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 1235799998872 111110 00011245789999999999999999987653
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.72 E-value=5.4e-17 Score=137.56 Aligned_cols=112 Identities=15% Similarity=0.197 Sum_probs=90.6
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE 166 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 166 (267)
+.+..+++|++|||||||.|..++.+|+.. +++|+||++|++.++.|++++.+.+ ...++++...+..++
T Consensus 55 ~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-----g~~v~git~s~~Q~~~a~~~~~~~g---~~~~v~~~~~d~~~~-- 124 (285)
T d1kpga_ 55 LGKLGLQPGMTLLDVGCGWGATMMRAVEKY-----DVNVVGLTLSKNQANHVQQLVANSE---NLRSKRVLLAGWEQF-- 124 (285)
T ss_dssp HTTTTCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTCC---CCSCEEEEESCGGGC--
T ss_pred HHHcCCCCCCEEEEecCcchHHHHHHHhcC-----CcceEEEeccHHHHHHHHHHHHhhh---hhhhhHHHHhhhhcc--
Confidence 334568999999999999999999999986 4799999999999999999998877 578888887665433
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+.+||.|++- ....+. .....+++++.++|||||++++.+..
T Consensus 125 ----~~~fD~i~si---------~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 125 ----DEPVDRIVSI---------GAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp ----CCCCSEEEEE---------SCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred ----cccccceeee---------hhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 2368888776 222222 45678999999999999999987653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.71 E-value=2.5e-17 Score=131.48 Aligned_cols=118 Identities=8% Similarity=0.006 Sum_probs=86.4
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccc--------cccceEEEe
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA--------EKGLVKLFN 158 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~--------~~~~v~~~~ 158 (267)
+....++++.+|||+|||+|+.+..||++ +.+|+|+|+|+.|++.|+++++..+... ....+.+++
T Consensus 13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T d1pjza_ 13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 86 (201)
T ss_dssp HHHHCCCTTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHcCCCCCCEEEEecCcCCHHHHHHHHc------CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence 33346889999999999999999999997 5899999999999999999987643100 023345666
Q ss_pred cChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 159 ~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
++..++.... ...+|+|++.. +.+ .......+++++.++|||||.+++..+.
T Consensus 87 ~d~~~l~~~~--~~~~D~i~~~~---------~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 87 GDFFALTARD--IGHCAAFYDRA---------AMIALPADMRERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp ECCSSSTHHH--HHSEEEEEEES---------CGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred cccccccccc--ccceeEEEEEe---------eeEecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence 5554433221 23689988763 222 2345678999999999999999887654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.71 E-value=5.5e-17 Score=140.16 Aligned_cols=133 Identities=15% Similarity=0.088 Sum_probs=104.9
Q ss_pred hhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh
Q 041272 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR 163 (267)
Q Consensus 84 ~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (267)
.+.++...+++|.+|||+|||+|.+++.+|.. | ..+|+++|+|+.+++.|++|++.++ ...+++++++|..+
T Consensus 135 ~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~-g----a~~V~~vD~s~~al~~a~~N~~~ng---l~~~~~~~~~d~~~ 206 (324)
T d2as0a2 135 NRLALEKWVQPGDRVLDVFTYTGGFAIHAAIA-G----ADEVIGIDKSPRAIETAKENAKLNG---VEDRMKFIVGSAFE 206 (324)
T ss_dssp HHHHHGGGCCTTCEEEETTCTTTHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHH
T ss_pred HHHHHHhhcCCCCeeecccCcccchhhhhhhc-C----CcEEEeecCCHHHHHHHHHHHHHcC---CCccceeeechhhh
Confidence 34444556788999999999999999999976 2 3689999999999999999999998 55789999988876
Q ss_pred hhhc-CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 164 MEEI-VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 164 l~~~-~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
.... ...+.+||+|++|++...............+.+++..+.++|||||+|+..++..+.
T Consensus 207 ~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~ 268 (324)
T d2as0a2 207 EMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV 268 (324)
T ss_dssp HHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS
T ss_pred hhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 5442 334458999999988765554443334456678999999999999999888775443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.1e-17 Score=141.17 Aligned_cols=121 Identities=20% Similarity=0.186 Sum_probs=92.2
Q ss_pred HHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-------cccccce
Q 041272 82 IAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS-------KAEKGLV 154 (267)
Q Consensus 82 ~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~-------~~~~~~v 154 (267)
+....+....++||++|||+|||+|.++..||+.+++ +++|+++|+++++++.|++|+++.+. .....|+
T Consensus 86 D~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~---~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv 162 (324)
T d2b25a1 86 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGS---QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV 162 (324)
T ss_dssp HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred cHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCC---CcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccce
Confidence 4455556668999999999999999999999999875 78999999999999999999986431 1134688
Q ss_pred EEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
++.+++..+..... .+..||.|+.|++ . +..++.++.++|||||++++.++
T Consensus 163 ~~~~~di~~~~~~~-~~~~fD~V~LD~p---~-----------P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 163 DFIHKDISGATEDI-KSLTFDAVALDML---N-----------PHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp EEEESCTTCCC--------EEEEEECSS---S-----------TTTTHHHHGGGEEEEEEEEEEES
T ss_pred eEEecchhhccccc-CCCCcceEeecCc---C-----------HHHHHHHHHHhccCCCEEEEEeC
Confidence 89887765443322 2347999999852 2 23689999999999999987664
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=1.7e-17 Score=135.11 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=87.9
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
.+..+....+++|++|||||||+|+.+..+|+.+++ .++|+++|+++++++.|+++++..+ ..++.+++++..
T Consensus 64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~---~g~V~~id~~~~~~~~a~~~~~~~~----~~n~~~~~~d~~ 136 (213)
T d1dl5a1 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVERLG----IENVIFVCGDGY 136 (213)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGG
T ss_pred hHHHHHhhhccccceEEEecCccchhHHHHHHHhCC---CCcEEEeecchhhHHHhhhhHhhhc----ccccccccCchH
Confidence 444555557899999999999999999999999875 6899999999999999999999877 678888876653
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...+.+.+||.|+++.. .++ +.+++.+.|||||++++..
T Consensus 137 ---~~~~~~~~fD~I~~~~~---------~~~------~p~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 137 ---YGVPEFSPYDVIFVTVG---------VDE------VPETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp ---GCCGGGCCEEEEEECSB---------BSC------CCHHHHHHEEEEEEEEEEB
T ss_pred ---Hccccccchhhhhhhcc---------HHH------hHHHHHHhcCCCcEEEEEE
Confidence 33334457999998842 111 1245678899999998754
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=5.5e-17 Score=133.50 Aligned_cols=120 Identities=12% Similarity=0.123 Sum_probs=91.6
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
+.+......+|++|||||||+|..+..+++.. ..+|+|||+|+.+++.|+++++..+ .++.++..+..++
T Consensus 44 ~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~-----~~~v~~id~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~ 113 (229)
T d1zx0a1 44 HALAAAASSKGGRVLEVGFGMAIAASKVQEAP-----IDEHWIIECNDGVFQRLRDWAPRQT-----HKVIPLKGLWEDV 113 (229)
T ss_dssp HHHHHHHTTTCEEEEEECCTTSHHHHHHHTSC-----EEEEEEEECCHHHHHHHHHHGGGCS-----SEEEEEESCHHHH
T ss_pred HHHHHhhccCCCeEEEeeccchHHHHHHHHcC-----CCeEEEeCCCHHHHHHHHHHhhhcc-----ccccccccccccc
Confidence 34444455788999999999999999999863 3689999999999999999987754 5677777776665
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...++ +.+||.|+++.... .....+..+...+++++.|+|||||+|++..
T Consensus 114 ~~~~~-~~~fD~i~fD~~~~----~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 114 APTLP-DGHFDGILYDTYPL----SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp GGGSC-TTCEEEEEECCCCC----BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccc-cccccceeeccccc----ccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 55443 45899999884221 1123355677899999999999999997643
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.71 E-value=3e-17 Score=139.20 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=90.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+....+|||+|||+|.++..+++.++. +.+|+|+|+|+.+++.|++++...+ .+++++..+..++ .. +
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~---~~~v~giD~s~~~l~~a~~~~~~~~-----~~~~f~~~d~~~~---~~-~ 92 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPE---GSKYTGIDSGETLLAEARELFRLLP-----YDSEFLEGDATEI---EL-N 92 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCT---TCEEEEEECCHHHHHHHHHHHHSSS-----SEEEEEESCTTTC---CC-S
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCC---CCEEEEEecchhHhhhhhccccccc-----ccccccccccccc---cc-c
Confidence 456789999999999999999998764 5799999999999999999998865 4788888665443 22 2
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+||+|+++ .++++.+++..+++++.++|||||.+++.+.
T Consensus 93 ~~fD~v~~~---------~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 93 DKYDIAICH---------AFLLHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp SCEEEEEEE---------SCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCceEEEEe---------hhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 379999998 4666777788999999999999999988774
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.70 E-value=2.8e-17 Score=133.63 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=90.2
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
..+.-.+.++....++++++|||||||+|+.+..+|+.++ .+|+++|+++++++.|++++++.+ ..|+.++
T Consensus 62 s~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g-----~~V~~ie~~~~l~~~a~~~l~~~g----~~nv~~~ 132 (215)
T d1jg1a_ 62 SAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-----TDVYTIERIPELVEFAKRNLERAG----VKNVHVI 132 (215)
T ss_dssp CCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-----SCEEEEESCHHHHHHHHHHHHHTT----CCSEEEE
T ss_pred hhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC-----ceeEEEeccHHHHHHHHHHHHHcC----CceeEEE
Confidence 3344455666666799999999999999999999999873 579999999999999999999988 7899999
Q ss_pred ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 158 ~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+++.. ...++..+||.|+..... . .+...+.+.|||||++++...
T Consensus 133 ~gd~~---~g~~~~~pfD~Iiv~~a~---------~------~ip~~l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 133 LGDGS---KGFPPKAPYDVIIVTAGA---------P------KIPEPLIEQLKIGGKLIIPVG 177 (215)
T ss_dssp ESCGG---GCCGGGCCEEEEEECSBB---------S------SCCHHHHHTEEEEEEEEEEEC
T ss_pred ECccc---cCCcccCcceeEEeeccc---------c------cCCHHHHHhcCCCCEEEEEEc
Confidence 87664 333445689999987322 1 112346778999999987553
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=1.5e-16 Score=136.99 Aligned_cols=145 Identities=17% Similarity=0.110 Sum_probs=107.0
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-CCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI-VPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~~~ 171 (267)
..|.+|||++||+|.+++.+|.. +.+|+++|+|+.+++.|++|++.++ ..+++++..+..++... ....
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g------~~~V~~vD~s~~al~~a~~n~~~ng----l~~~~~i~~d~~~~~~~~~~~~ 213 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEENARLNG----LGNVRVLEANAFDLLRRLEKEG 213 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHHHHHHTT----CTTEEEEESCHHHHHHHHHHTT
T ss_pred hCCCeeeccCCCCcHHHHHHHhc------CCcEEeecchHHHHHHHHHHHHHcC----CCCcceeeccHHHHhhhhHhhh
Confidence 36889999999999999998864 4799999999999999999999998 57899999888776443 3334
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhH-HHHHHHHHhCCCCceEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREEL-EAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 249 (267)
..||+|+.|++...............+.+++..+.++|||||+|+..++..+. ..++. +.+.+-.... ...++++.
T Consensus 214 ~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~-~~~~f~~~v~~a~~~a-~~~~~~~~ 290 (318)
T d1wxxa2 214 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHM-TEPLFYAMVAEAAQDA-HRLLRVVE 290 (318)
T ss_dssp CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS-CHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccc-CHHHHHHHHHHHHHHc-CCCEEEEE
Confidence 58999999987755544443334556678999999999999999887774433 33333 3333333332 23455554
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.70 E-value=1.4e-16 Score=127.98 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=84.6
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+++ ++|||||||+|..+..++++ +.+|+|+|+|+.|++.|+++++..+ ..++++...+..++ .. +
T Consensus 29 ~~~-grvLDiGcG~G~~~~~la~~------g~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~d~~~~---~~-~ 93 (198)
T d2i6ga1 29 VAP-GRTLDLGCGNGRNSLYLAAN------GYDVTAWDKNPASMANLERIKAAEG----LDNLQTDLVDLNTL---TF-D 93 (198)
T ss_dssp SCS-CEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTT----CTTEEEEECCTTTC---CC-C
T ss_pred CCC-CcEEEECCCCCHHHHHHHHH------hhhhccccCcHHHHHHHHHHhhhcc----ccchhhhheecccc---cc-c
Confidence 344 59999999999999999987 4799999999999999999998876 56777776554333 22 4
Q ss_pred CcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..||+|++.. ++++ .+...++++++.++|+|||++++....
T Consensus 94 ~~fD~I~~~~---------~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 94 GEYDFILSTV---------VMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp CCEEEEEEES---------CGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred ccccEEEEee---------eeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 5899999873 2332 345678999999999999999998764
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=1.3e-16 Score=135.80 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=84.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+++.+|||+|||+|.++..||+. +.+|+|+|+|++|++.|+++....+......+..+...+...+....+...
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~------g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGD 128 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTT
T ss_pred cCCCEEEEecCCCcHHHHHHHHc------CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCC
Confidence 45779999999999999999987 479999999999999999998765421122233444444433333344445
Q ss_pred cEEEEEEe---CCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFN---LGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~---~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||.|++. +.+++.... ...+...+|+++.++|||||+|++...
T Consensus 129 ~fd~v~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 129 GFDAVICLGNSFAHLPDSKG----DQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp CEEEEEECSSCGGGSCCTTS----SSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceEEEEecCchhhcCCccc----ChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 79998864 233433221 135677899999999999999988654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.68 E-value=4.2e-16 Score=124.92 Aligned_cols=110 Identities=20% Similarity=0.208 Sum_probs=86.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++++|||+|||+|.+++.+++. ..+|+++|+|+.+++.|++|++.++. ...+++++.++. .+.. +
T Consensus 49 ~~~~~~~VLDiGcG~G~~~~~la~~------~~~v~~iD~s~~~i~~a~~n~~~~~l--~~~~i~~~~~d~---~~~~-~ 116 (194)
T d1dusa_ 49 VVDKDDDILDLGCGYGVIGIALADE------VKSTTMADINRRAIKLAKENIKLNNL--DNYDIRVVHSDL---YENV-K 116 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHTTC--TTSCEEEEECST---TTTC-T
T ss_pred CcCCCCeEEEEeecCChhHHHHHhh------ccccceeeeccccchhHHHHHHHhCC--ccceEEEEEcch---hhhh-c
Confidence 4567899999999999999999986 36899999999999999999988761 123578877554 3322 3
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..||+|++++++. ...+...++++++.++|||||+++++..
T Consensus 117 ~~~fD~Ii~~~p~~--------~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 117 DRKYNKIITNPPIR--------AGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp TSCEEEEEECCCST--------TCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCceEEEEcccEE--------ecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 45899999996541 1233456899999999999999988765
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.68 E-value=2.3e-16 Score=131.76 Aligned_cols=137 Identities=12% Similarity=0.031 Sum_probs=95.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|..+..++... ..+|++||+|+.|++.|++++.. ..++++++.+.. ++..++.
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~-----~~~v~~vD~s~~~l~~a~~~~~~------~~~~~~~~~d~~---~~~~~~~ 157 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKL-----YATTDLLEPVKHMLEEAKRELAG------MPVGKFILASME---TATLPPN 157 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH-----CSEEEEEESCHHHHHHHHHHTTT------SSEEEEEESCGG---GCCCCSS
T ss_pred CCCCeEEEecccCChhhHHHHhhc-----CceEEEEcCCHHHHHhhhccccc------cccceeEEcccc---ccccCCC
Confidence 466799999999999999888664 25899999999999999998765 346788876554 4444566
Q ss_pred cEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEecCCCCChhh-------HHHHHHHHHhCCCC
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYVGHPGGREE-------LEAVEAFARSLSVD 243 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-------~~~~~~~~~~l~~~ 243 (267)
.||+|++.. ++++. ++..++++++.+.|||||.+++.+.......... ......+.+.+...
T Consensus 158 ~fD~I~~~~---------vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~a 228 (254)
T d1xtpa_ 158 TYDLIVIQW---------TAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNES 228 (254)
T ss_dssp CEEEEEEES---------CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHH
T ss_pred ccceEEeec---------cccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHc
Confidence 899999983 44444 3456899999999999999999876433211100 00122333334445
Q ss_pred ceEEEEEee
Q 041272 244 DWICCKFQM 252 (267)
Q Consensus 244 ~~~~~~~~~ 252 (267)
+|++++...
T Consensus 229 Gf~ii~~~~ 237 (254)
T d1xtpa_ 229 GVRVVKEAF 237 (254)
T ss_dssp TCCEEEEEE
T ss_pred CCEEEEEEe
Confidence 787776554
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.68 E-value=3.1e-16 Score=126.50 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=89.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++..|||||||+|..+..+|+.. |+..++|||+++.++..|.+++++.+ ..|+.++.++..++.+.++ +..
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~----p~~~~iGiD~~~~~i~~a~~~~~~~~----l~Nv~~~~~Da~~l~~~~~-~~~ 99 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQN----PDINYIGIELFKSVIVTAVQKVKDSE----AQNVKLLNIDADTLTDVFE-PGE 99 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHC----TTSEEEEECSCHHHHHHHHHHHHHSC----CSSEEEECCCGGGHHHHCC-TTS
T ss_pred CCceEEEEEecCcHHHHHHHHhC----CCCcEEEeecchHHHHHHHHHHHHHh----ccCchhcccchhhhhcccC-chh
Confidence 45689999999999999999985 46999999999999999999999988 6899999999888876554 347
Q ss_pred EEEEEEeCCCCCCCCCceeechh--hHHHHHHHHHhcccCCcEEEEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSE--TTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+|.++...+. |..... |... ....+++++.++|||||.|++.+
T Consensus 100 ~d~v~i~fp~-P~~k~~--h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 100 VKRVYLNFSD-PWPKKR--HEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCEEEEESCC-CCCSGG--GGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred hhcccccccc-ccchhh--hcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 8887776432 222111 1111 12589999999999999998865
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.4e-16 Score=127.38 Aligned_cols=117 Identities=13% Similarity=0.067 Sum_probs=88.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-------------cccccceEEE
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS-------------KAEKGLVKLF 157 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~-------------~~~~~~v~~~ 157 (267)
.++++.+|||+|||+|..+..||+. +.+|+|||+|+.+|+.|+++...... .....+++++
T Consensus 42 ~~~~~~rvLd~GCG~G~~a~~LA~~------G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 115 (229)
T d2bzga1 42 KGKSGLRVFFPLCGKAVEMKWFADR------GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY 115 (229)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHhC------CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence 3568889999999999999999987 57999999999999999988764320 0113578888
Q ss_pred ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 158 ~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+++..++.... ...||+|+..... ....++....+++++.++|||||++++..+..
T Consensus 116 ~~d~~~l~~~~--~~~fd~i~~~~~l-------~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~ 171 (229)
T d2bzga1 116 CCSIFDLPRTN--IGKFDMIWDRGAL-------VAINPGDRKCYADTMFSLLGKKFQYLLCVLSY 171 (229)
T ss_dssp ESCGGGGGGSC--CCCEEEEEESSST-------TTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred Ecchhhccccc--cCceeEEEEEEEE-------EeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence 87776655432 3479999876311 01134667899999999999999988887643
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.67 E-value=3.4e-17 Score=133.93 Aligned_cols=107 Identities=19% Similarity=0.157 Sum_probs=82.2
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
.+.++....++++++|||||||+|++|..||+.. ++|+++|+++++++.|++++.. ..|+.++.++..
T Consensus 59 ~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~------~~V~aiE~~~~~~~~A~~~~~~------~~nv~~~~~d~~ 126 (224)
T d1vbfa_ 59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV------DKVVSVEINEKMYNYASKLLSY------YNNIKLILGDGT 126 (224)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS------SEEEEEESCHHHHHHHHHHHTT------CSSEEEEESCGG
T ss_pred HHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh------cccccccccHHHHHHHHHHHhc------ccccccccCchh
Confidence 3444555578999999999999999999999973 6899999999999999998775 368999886653
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...++..+||.|+.+... . .+.+.+.+.|||||+|++..
T Consensus 127 ---~g~~~~~pfD~Iiv~~a~---------~------~ip~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 127 ---LGYEEEKPYDRVVVWATA---------P------TLLCKPYEQLKEGGIMILPI 165 (224)
T ss_dssp ---GCCGGGCCEEEEEESSBB---------S------SCCHHHHHTEEEEEEEEEEE
T ss_pred ---hcchhhhhHHHHHhhcch---------h------hhhHHHHHhcCCCCEEEEEE
Confidence 333334579999987321 1 12345678899999998754
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.67 E-value=7e-16 Score=128.63 Aligned_cols=147 Identities=15% Similarity=0.141 Sum_probs=107.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.+..+|||||||+|.++..++++. |+.+++++|+ +++++.+++++...+ ...+++++.+|.. +..+
T Consensus 78 ~~~~~~VLDvGcG~G~~~~~la~~~----p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~rv~~~~~D~~---~~~~-- 144 (253)
T d1tw3a2 78 WTNVRHVLDVGGGKGGFAAAIARRA----PHVSATVLEM-AGTVDTARSYLKDEG---LSDRVDVVEGDFF---EPLP-- 144 (253)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHC----TTCEEEEEEC-TTHHHHHHHHHHHTT---CTTTEEEEECCTT---SCCS--
T ss_pred CccCCEEEEeCCCCCHHHHHHHHhc----ceeEEEEccC-HHHHHHHHHHHHHhh---cccchhhccccch---hhcc--
Confidence 4566899999999999999999986 4689999998 679999999998877 4678999986652 2222
Q ss_pred CcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEecCCCCC--hhhHH---------------H
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYVGHPGG--REELE---------------A 232 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~---------------~ 232 (267)
..+|+|++. .++|+. +...++|++++++|||||+++|.+....... ..... .
T Consensus 145 ~~~D~v~~~---------~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt 215 (253)
T d1tw3a2 145 RKADAIILS---------FVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRT 215 (253)
T ss_dssp SCEEEEEEE---------SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCB
T ss_pred cchhheeec---------cccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCC
Confidence 368999887 344433 3456899999999999999999876432211 11100 1
Q ss_pred HHHHHHhCCCCceEEEEEeeecCCCCce
Q 041272 233 VEAFARSLSVDDWICCKFQMLNRPLAPV 260 (267)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~ 260 (267)
.++|.+.+...+|++.+...+..+..|+
T Consensus 216 ~~e~~~ll~~AGf~~~~v~~~~~p~~~~ 243 (253)
T d1tw3a2 216 REKWDGLAASAGLVVEEVRQLPSPTIPY 243 (253)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEECSSSSC
T ss_pred HHHHHHHHHHCCCeEEEEEECCCCCCCc
Confidence 2455556667889998877776665553
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.66 E-value=1.4e-16 Score=130.69 Aligned_cols=101 Identities=11% Similarity=0.084 Sum_probs=83.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||||||+|.++..+++. +.+|+|||+|+++++.|+++.. .++.+++++..++ .. +.+
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~------g~~v~giD~s~~~i~~a~~~~~--------~~~~~~~~~~~~~---~~-~~~ 81 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH------FNDITCVEASEEAISHAQGRLK--------DGITYIHSRFEDA---QL-PRR 81 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT------CSCEEEEESCHHHHHHHHHHSC--------SCEEEEESCGGGC---CC-SSC
T ss_pred CCCcEEEEeCCCcHHHHHHHHc------CCeEEEEeCcHHHhhhhhcccc--------ccccccccccccc---cc-ccc
Confidence 4669999999999999999876 4689999999999999987643 4678887665443 22 358
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHH-hcccCCcEEEEEEec
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAE-RILIPGGLISMVVYV 221 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~-~~LkpgG~l~i~~~~ 221 (267)
||+|++. .++++.+++..+++++. ++|||||.+++.++.
T Consensus 82 fD~I~~~---------~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 82 YDNIVLT---------HVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp EEEEEEE---------SCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ccccccc---------ceeEecCCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 9999988 57777788899999998 789999999998763
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.64 E-value=1.3e-15 Score=122.88 Aligned_cols=116 Identities=21% Similarity=0.148 Sum_probs=90.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+..|||||||+|..+..+|+.. |+..++|+|+++.++..|.+++.+.+ ..|+.++.++..++...++ +.+
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~----p~~~~iGid~~~~~v~~a~~~~~~~~----l~Ni~~~~~da~~l~~~~~-~~~ 101 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQN----PDINYIGIDIQKSVLSYALDKVLEVG----VPNIKLLWVDGSDLTDYFE-DGE 101 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHC----TTSEEEEEESCHHHHHHHHHHHHHHC----CSSEEEEECCSSCGGGTSC-TTC
T ss_pred CCCeEEEEeccCCHHHHHHHHHC----CCCceEEEeccHHHHHHHHHhhhhhc----cccceeeecCHHHHhhhcc-CCc
Confidence 45689999999999999999985 46999999999999999999999887 6899999999888876554 447
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+|.|+.+++. |..........-....+++.+.++|||||.+++.+
T Consensus 102 ~~~i~i~fPd-Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 102 IDRLYLNFSD-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CSEEEEESCC-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred eehhcccccc-cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 8888877532 22211100011112689999999999999998865
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.1e-15 Score=125.34 Aligned_cols=147 Identities=16% Similarity=0.055 Sum_probs=93.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccc-------------------
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK------------------- 151 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~------------------- 151 (267)
...++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|+++++........
T Consensus 48 ~~~~g~~vLDlGcG~G~~~~~~~~~~-----~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (257)
T d2a14a1 48 GGLQGDTLIDIGSGPTIYQVLAACDS-----FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEE 122 (257)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGT-----EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHH
T ss_pred cCCCCCEEEEECCCCCHhHHHHhccc-----cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHH
Confidence 34567899999999999988877652 357999999999999999998764411000
Q ss_pred ------cceEEE--ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeec----hhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 152 ------GLVKLF--NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT----SETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 152 ------~~v~~~--~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..+... .....+..........||+|++.. ++++ .++...+++++.++|||||.+++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~---------~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~ 193 (257)
T d2a14a1 123 KEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLL---------AMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193 (257)
T ss_dssp HHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES---------CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHHhhhhhcccccccccccccccccCCcccEEeehh---------hHHHhcccHHHHHHHHHHHHhccCCCcEEEEEE
Confidence 000000 000011111223345799999873 3332 2567889999999999999999987
Q ss_pred ecCCCC----------ChhhHHHHHHHHHhCCCCceEEEEEeeec
Q 041272 220 YVGHPG----------GREELEAVEAFARSLSVDDWICCKFQMLN 254 (267)
Q Consensus 220 ~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (267)
+..... .....+.+.+. +...+|+++......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~aGf~v~~~~~~~ 235 (257)
T d2a14a1 194 TLRLPSYMVGKREFSCVALEKGEVEQA---VLDAGFDIEQLLHSP 235 (257)
T ss_dssp ESSCCEEEETTEEEECCCCCHHHHHHH---HHHTTEEEEEEEEEC
T ss_pred ecccccceeccccccccCCCHHHHHHH---HHHCCCEEEEEEEec
Confidence 643210 01123334444 455789887775543
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.62 E-value=3.5e-16 Score=127.88 Aligned_cols=112 Identities=14% Similarity=0.233 Sum_probs=82.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCC--CCCcEEEEEeCChHHHHHHHHHHhhcccc-ccccceEEEecChhhhhhc
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADE--SSAGCVYGLDIQSEALKSTSSLLDKTTSK-AEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~--~p~~~v~giD~s~~~i~~a~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~ 167 (267)
.++++++|||||||+|+.|..+++.++.. ++..+|+++|+++++++.|++++...+.. ....|+.++.+|.. ..
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~---~~ 153 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGR---KG 153 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGG---GC
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccc---cc
Confidence 68899999999999999999999987531 11248999999999999999997654210 01468999886654 33
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.++..+||.|+.+... . .+.+.+.+.|||||++++...
T Consensus 154 ~~~~~~fD~Iiv~~a~---------~------~~p~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 154 YPPNAPYNAIHVGAAA---------P------DTPTELINQLASGGRLIVPVG 191 (223)
T ss_dssp CGGGCSEEEEEECSCB---------S------SCCHHHHHTEEEEEEEEEEES
T ss_pred cccccceeeEEEEeec---------h------hchHHHHHhcCCCcEEEEEEe
Confidence 3345589999988422 1 112356789999999977543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.5e-15 Score=127.73 Aligned_cols=98 Identities=21% Similarity=0.303 Sum_probs=78.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..+++..+ +.+++|+|+|+.|++.|+++. .++.+++++..++ ..++
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~----~~~~~giD~s~~~~~~a~~~~---------~~~~~~~~d~~~l---~~~~ 145 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALP----EITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHRL---PFSD 145 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCT----TSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTSC---SBCT
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCC----CCEEEEecchHhhhhhhhccc---------ccccceeeehhhc---cCCC
Confidence 35678999999999999999999853 589999999999999998742 5678887666443 4456
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+||+|++... . ..++++.|+|||||+++++.+.
T Consensus 146 ~sfD~v~~~~~---------~-------~~~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 146 TSMDAIIRIYA---------P-------CKAEELARVVKPGGWVITATPG 179 (268)
T ss_dssp TCEEEEEEESC---------C-------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred CCEEEEeecCC---------H-------HHHHHHHHHhCCCcEEEEEeeC
Confidence 68999998731 1 1257899999999999998873
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.61 E-value=5.4e-15 Score=126.86 Aligned_cols=128 Identities=12% Similarity=0.051 Sum_probs=98.9
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IV 168 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~ 168 (267)
..+.+|.+|||++||+|.+++.++.. + ..+|++||+|+.+++.|++|++.++. ...+++++++|..+... ..
T Consensus 140 ~~~~~g~~VLdlf~~~G~~sl~aa~~-g----a~~V~~vD~s~~a~~~a~~N~~~n~l--~~~~~~~i~~d~~~~l~~~~ 212 (317)
T d2b78a2 140 NGSAAGKTVLNLFSYTAAFSVAAAMG-G----AMATTSVDLAKRSRALSLAHFEANHL--DMANHQLVVMDVFDYFKYAR 212 (317)
T ss_dssp HTTTBTCEEEEETCTTTHHHHHHHHT-T----BSEEEEEESCTTHHHHHHHHHHHTTC--CCTTEEEEESCHHHHHHHHH
T ss_pred HHhhCCCceeecCCCCcHHHHHHHhC-C----CceEEEecCCHHHHHHHHHHHHHhcc--cCcceEEEEccHHHHHHHHH
Confidence 34667999999999999999988864 2 35899999999999999999999872 13579999988876644 33
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
.....||+|+.|+|.+............++.++++.+.++|+|||+|+++++..+.
T Consensus 213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~ 268 (317)
T d2b78a2 213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM 268 (317)
T ss_dssp HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC
Confidence 34458999999988765444444445567788999999999999999998875443
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=1.1e-15 Score=123.27 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=78.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++++|||||||+|.++..++ +++|||+|+.|++.|+++ ++.+++++..++ ..++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~~~----------~~~giD~s~~~~~~a~~~-----------~~~~~~~d~~~l---~~~~ 89 (208)
T d1vlma_ 34 LLPEGRGVEIGVGTGRFAVPLK----------IKIGVEPSERMAEIARKR-----------GVFVLKGTAENL---PLKD 89 (208)
T ss_dssp HCCSSCEEEETCTTSTTHHHHT----------CCEEEESCHHHHHHHHHT-----------TCEEEECBTTBC---CSCT
T ss_pred hCCCCeEEEECCCCcccccccc----------eEEEEeCChhhccccccc-----------cccccccccccc---cccc
Confidence 4567799999999999876553 468999999999999862 467787666544 3445
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+||+|++. .++++.+++.++++++.++|||||.+++.++.
T Consensus 90 ~~fD~I~~~---------~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~ 130 (208)
T d1vlma_ 90 ESFDFALMV---------TTICFVDDPERALKEAYRILKKGGYLIVGIVD 130 (208)
T ss_dssp TCEEEEEEE---------SCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccc---------cccccccccccchhhhhhcCCCCceEEEEecC
Confidence 689999998 46666677889999999999999999998764
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.60 E-value=1.5e-14 Score=120.71 Aligned_cols=147 Identities=12% Similarity=0.068 Sum_probs=106.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.+..+|||||||+|.++..+++++ |+.+++++|+ +++++.|++++...+ ...++.++.++. .+..+
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~----P~~~~~~~Dl-p~~~~~a~~~~~~~~---~~~ri~~~~~d~---~~~~p-- 145 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRA----PHLRGTLVEL-AGPAERARRRFADAG---LADRVTVAEGDF---FKPLP-- 145 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHC----TTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCT---TSCCS--
T ss_pred CccCCEEEEECCCCCHHHHHHHHhh----cCcEEEEecC-hHHHHHHHHHHhhcC---Ccceeeeeeeec---ccccc--
Confidence 4566799999999999999999985 5699999997 789999999998877 467888887554 22222
Q ss_pred CcEEEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEecCCC-CChhh-HH----------------
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYVGHP-GGREE-LE---------------- 231 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~-~~---------------- 231 (267)
..+|++++. .++|+. +...++|+++++.|||||+++|.+..... ..... ..
T Consensus 146 ~~~D~v~~~---------~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~r 216 (256)
T d1qzza2 146 VTADVVLLS---------FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVR 216 (256)
T ss_dssp CCEEEEEEE---------SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCC
T ss_pred ccchhhhcc---------ccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccC
Confidence 258999887 344433 34578899999999999999998753211 11110 00
Q ss_pred HHHHHHHhCCCCceEEEEEeeecCCCCce
Q 041272 232 AVEAFARSLSVDDWICCKFQMLNRPLAPV 260 (267)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~ 260 (267)
...+|.+.+...+|++++.........|+
T Consensus 217 t~~e~~~ll~~AGf~~~~~~~~~~~~~~~ 245 (256)
T d1qzza2 217 TRDEVVDLAGSAGLALASERTSGSTTLPF 245 (256)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEECCSSCSS
T ss_pred CHHHHHHHHHHCCCceeEEEEeCCcCccC
Confidence 13456677778899999888776654443
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=1.1e-14 Score=116.01 Aligned_cols=133 Identities=23% Similarity=0.325 Sum_probs=104.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC-
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP- 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~- 169 (267)
.+.+++.+||++||+|.++..+++.++ +++|+|+|.+++|++.|+++++..+ .++.+++++..++.....
T Consensus 20 ~~~~~~~~lD~t~G~Gghs~~il~~~~----~~~vi~~D~d~~~l~~a~~~l~~~~-----~r~~~~~~~f~~~~~~~~~ 90 (192)
T d1m6ya2 20 KPEDEKIILDCTVGEGGHSRAILEHCP----GCRIIGIDVDSEVLRIAEEKLKEFS-----DRVSLFKVSYREADFLLKT 90 (192)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCT----TCEEEEEESCHHHHHHHHHHTGGGT-----TTEEEEECCGGGHHHHHHH
T ss_pred CCCCCCEEEEecCCCcHHHHHHHhcCC----CCeEEEeechHHHHHHHHHhhcccc-----ccccchhHHHhhHHHHHHH
Confidence 467899999999999999999999864 5899999999999999999998754 689999988877655421
Q ss_pred -CCCcEEEEEEeCCCC----CCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 170 -KSTAVRLVAFNLGYL----PGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 170 -~~~~~d~ii~~~~~l----p~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
....||.|++|+|+- .... .......+.+..+.++|+|||.+++..+. ..|.+.+.+++....
T Consensus 91 ~~~~~vdgIl~DlGvSs~Qld~~~----r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~-----s~Edr~vk~~f~~~~ 158 (192)
T d1m6ya2 91 LGIEKVDGILMDLGVSTYQLKGEN----RELENLKEFLKKAEDLLNPGGRIVVISFH-----SLEDRIVKETFRNSK 158 (192)
T ss_dssp TTCSCEEEEEEECSCCHHHHHTSH----THHHHHHHHHHHGGGGEEEEEEEEEEESS-----HHHHHHHHHHHHHCS
T ss_pred cCCCCcceeeeccchhHhhhhhhh----ccchhHHHHHHHHHHhcCCCCeeeeeccc-----cHHHHHHHHHHhhcc
Confidence 235899999998761 1110 12345578899999999999999998873 345567788887654
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=2.5e-14 Score=119.71 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=97.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
+..+|+|+|||+|.++..+++. |+++|+++|+|+++++.|++|++.++ ...++.+..++..+.... ....
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~-----~~~~v~a~Dis~~Al~~A~~Na~~~~---~~~~~~i~~~~~~~~~~~--~~~~ 179 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKF-----SDAIVFATDVSSKAVEIARKNAERHG---VSDRFFVRKGEFLEPFKE--KFAS 179 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-----SSCEEEEEESCHHHHHHHHHHHHHTT---CTTSEEEEESSTTGGGGG--GTTT
T ss_pred cccEEEEeeeeeehhhhhhhhc-----ccceeeechhhhhHHHHHHHHHHHcC---CCceeEEeeccccccccc--ccCc
Confidence 3458999999999999999865 35899999999999999999999988 456677776555433221 1247
Q ss_pred EEEEEEeCCCCCCCCC---ceeechhh-------HHHHHHH-HHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCC
Q 041272 174 VRLVAFNLGYLPGGDK---SVITTSET-------TKMALEA-AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSV 242 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~---~~~~~~~~-------~~~~l~~-~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (267)
||+|++|+||+|..+. .+.+.|.. -..++++ +.++|+|||++++.... ...+.+.++ +..
T Consensus 180 fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~------~Q~~~v~~l---~~~ 250 (271)
T d1nv8a_ 180 IEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE------DQVEELKKI---VSD 250 (271)
T ss_dssp CCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT------TCHHHHTTT---STT
T ss_pred ccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH------HHHHHHHHH---HHh
Confidence 9999999999986532 11122211 0122222 35789999998775532 223344433 333
Q ss_pred CceEEEEEeeecCCCCceEEEeecC
Q 041272 243 DDWICCKFQMLNRPLAPVLVFLFKR 267 (267)
Q Consensus 243 ~~~~~~~~~~~~~~~~p~~~~~~k~ 267 (267)
.+| +..+ .+.+.+++++|+
T Consensus 251 ~g~----~kDl--~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 251 TVF----LKDS--AGKYRFLLLNRR 269 (271)
T ss_dssp CEE----EECT--TSSEEEEEEECC
T ss_pred CCE----Eecc--CCCcEEEEEEEc
Confidence 444 1121 355777777775
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.2e-14 Score=116.84 Aligned_cols=143 Identities=8% Similarity=0.019 Sum_probs=96.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-hhhhcC--CC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-RMEEIV--PK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~--~~ 170 (267)
+..+|||+|||+|.+++.++.+.+ +.+++|+|+|+++++.|++|++.++ +..++.+++.+.. .+.... ..
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~----~~~~~~~Di~~~al~~A~~N~~~n~---l~~~~~~~~~~~~~~~~~~~~~~~ 133 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLN----GWYFLATEVDDMCFNYAKKNVEQNN---LSDLIKVVKVPQKTLLMDALKEES 133 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH----CCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTCSSTTTSTTCC
T ss_pred ccceEEEeCCCchHHHHHHHHhCC----CccccceecCHHHHHHHHHHHHHhC---CCcceeeeeeccHHhhhhhhhhcc
Confidence 445999999999999999999874 5899999999999999999999988 5677888764433 222222 12
Q ss_pred CCcEEEEEEeCCCCCCCCCcee-------ec-------------------hhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVI-------TT-------------------SETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~-------~~-------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
+..||+|++|+||++..+.... .. .....+++++..+.++..|++..... ..
T Consensus 134 ~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig--~~ 211 (250)
T d2h00a1 134 EIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLG--KK 211 (250)
T ss_dssp SCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEES--ST
T ss_pred cCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEec--ch
Confidence 3479999999999876432211 00 01356778888899999999865443 22
Q ss_pred CChhhHHHHHHHHHhCCCCceEEE
Q 041272 225 GGREELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~~ 248 (267)
+....+...+.........++
T Consensus 212 ---~~l~~i~~~L~~~g~~~i~~i 232 (250)
T d2h00a1 212 ---CSLAPLKEELRIQGVPKVTYT 232 (250)
T ss_dssp ---TSHHHHHHHHHHTTCSEEEEE
T ss_pred ---hhHHHHHHHHHHcCCCeEEEE
Confidence 223445566666554444433
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=1.7e-14 Score=120.42 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=87.0
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+++|.+|||+|||+|.+++.+|++. +++|+++|+++.+++.+++|++.++ +.++++++++|..++ .
T Consensus 103 ~~~~~g~~VlD~~aG~G~~~l~~a~~~-----~~~V~avd~n~~a~~~~~~N~~~n~---l~~~v~~~~~D~~~~---~- 170 (260)
T d2frna1 103 KVAKPDELVVDMFAGIGHLSLPIAVYG-----KAKVIAIEKDPYTFKFLVENIHLNK---VEDRMSAYNMDNRDF---P- 170 (260)
T ss_dssp HHCCTTCEEEETTCTTTTTHHHHHHHT-----CCEEEEECCCHHHHHHHHHHHHHTT---CTTTEEEECSCTTTC---C-
T ss_pred hhcCCccEEEECcceEcHHHHHHHHhC-----CcEEEEecCCHHHHHHHHHHHHHhC---CCceEEEEEcchHHh---c-
Confidence 357899999999999999999999872 3699999999999999999999988 567799998877544 2
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....||.|+++++. ....+++.+.++||+||++.+...
T Consensus 171 ~~~~~D~Ii~~~p~-------------~~~~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 171 GENIADRILMGYVV-------------RTHEFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp CCSCEEEEEECCCS-------------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCCCEEEECCCC-------------chHHHHHHHHhhcCCCCEEEEEec
Confidence 23579999998532 113678889999999999977654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.56 E-value=1.4e-13 Score=116.85 Aligned_cols=123 Identities=11% Similarity=0.070 Sum_probs=91.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~ 170 (267)
...+.+|||++||+|.+++.++.. +++|++||.|+.+++.|++|++.++. ...+++++++|..+... ....
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~------GA~V~~VD~s~~al~~a~~N~~ln~~--~~~~~~~i~~D~~~~l~~~~~~ 201 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKENQVLAGL--EQAPIRWICEDAMKFIQREERR 201 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHTC--TTSCEEEECSCHHHHHHHHHHH
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC------CCeEEEEeChHHHHHHHHHhhhhhcc--cCCcEEEEeCCHHHhHHHHhhc
Confidence 456789999999999999999875 47999999999999999999998872 12468999988876543 2223
Q ss_pred CCcEEEEEEeCCCCCCCCCcee-echhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVI-TTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
...||+|+.|+|.......... .........++.+.++|+|||.+++.+...
T Consensus 202 ~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 202 GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred CCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 4579999999886533322222 233445667788889999999866655533
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.2e-14 Score=125.45 Aligned_cols=122 Identities=14% Similarity=0.043 Sum_probs=88.0
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-----ccccceEEE
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-----AEKGLVKLF 157 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-----~~~~~v~~~ 157 (267)
..+.+....++++++|||+|||+|..+..+|+..+ ..+++|||+|+.+++.|+++.+..... ....+++++
T Consensus 140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~----~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~ 215 (328)
T d1nw3a_ 140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN----CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE 215 (328)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC----CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEE
T ss_pred HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC----CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEE
Confidence 34444455688999999999999999999998864 378999999999999999887653210 013579999
Q ss_pred ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 158 ~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+++..++.-. ....+.|+|+.+- + ...++....++++++.|||||+++...
T Consensus 216 ~gd~~~~~~~-~~~~~advi~~~~---------~-~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 216 RGDFLSEEWR-ERIANTSVIFVNN---------F-AFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp ECCTTSHHHH-HHHHHCSEEEECC---------T-TTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ECcccccccc-cccCcceEEEEcc---------e-ecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 9887654311 0011356776651 1 123566789999999999999997653
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.3e-14 Score=120.83 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=84.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCC--CcEEEEEeCChHHHHHHHHHHhhccccccccceE--EEecChhhhhh---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESS--AGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVK--LFNMCHSRMEE--- 166 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~--~~~~~~~~l~~--- 166 (267)
+..+|||||||+|.++..+++.+...++ ..+++|||+|+.|++.|++++.... ...++. +...+.+....
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS---NLENVKFAWHKETSSEYQSRML 116 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC---SCTTEEEEEECSCHHHHHHHHT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc---ccccccccchhhhhhhhcchhc
Confidence 3448999999999999888775421112 2478999999999999999986643 234443 34444433321
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
...++.+||+|++. .++++.+++..+++++.++|||||.++++.+.
T Consensus 117 ~~~~~~~fD~I~~~---------~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 117 EKKELQKWDFIHMI---------QMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp TSSSCCCEEEEEEE---------SCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCCCceeEEEEc---------cceecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence 12335689999998 46667777889999999999999999998774
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.53 E-value=6.4e-14 Score=107.65 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=85.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.|.+|||+|||+|.+++.++.+ | ..+|+++|.++.+++.+++|++.++ ...+++++++|...+.+.. ..+
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r-g----a~~v~~ve~~~~a~~~~~~n~~~~~---~~~~~~ii~~D~~~~l~~~--~~~ 83 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR-G----MSAAVLVEKNRKAQAIIQDNIIMTK---AENRFTLLKMEAERAIDCL--TGR 83 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-T----CCEEEEECCCHHHHHHHHHHHHTTT---CGGGEEEECSCHHHHHHHB--CSC
T ss_pred CCCeEEEcCCccCHHHHHHHHh-C----cceeeeehhchhhhhhhhhhhhhcc---cccchhhhccccccccccc--ccc
Confidence 5889999999999999998876 2 3699999999999999999999987 5678999998887765543 347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHH--hcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAE--RILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 220 (267)
||+|+.|+||- .......++.+. ++|+|||++++...
T Consensus 84 fDiIf~DPPy~----------~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 84 FDLVFLDPPYA----------KETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp EEEEEECCSSH----------HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cceeEechhhc----------cchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 99999997651 123345555553 57999999987654
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.2e-13 Score=120.45 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=102.6
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
..+.+.+..++ .+.++.+|||+.||+|.+++.||+. ..+|+|+|.++++++.|++|++.++ ..|++|+
T Consensus 198 e~l~~~v~~~~--~~~~~~~vlDLycG~G~fsl~La~~------~~~V~gvE~~~~ai~~A~~na~~n~----i~n~~~~ 265 (358)
T d1uwva2 198 QKMVARALEWL--DVQPEDRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQNARLNG----LQNVTFY 265 (358)
T ss_dssp HHHHHHHHHHH--TCCTTCEEEEESCTTTTTHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEE
T ss_pred hHHHHHHHHhh--ccCCCceEEEecccccccchhcccc------ccEEEeccCcHHHHHHHHHhHHhcc----cccceee
Confidence 34444443333 3567889999999999999999987 4799999999999999999999998 7899999
Q ss_pred ecChhhhhh-cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHH
Q 041272 158 NMCHSRMEE-IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAF 236 (267)
Q Consensus 158 ~~~~~~l~~-~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 236 (267)
.++.++... .......+|+++.|++= .- ..+.++.+.+. +|.-++||+|.+. ...+.+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~d~vilDPPR---~G---------~~~~~~~l~~~-~~~~ivYVSCnp~-----TlaRDl~~- 326 (358)
T d1uwva2 266 HENLEEDVTKQPWAKNGFDKVLLDPAR---AG---------AAGVMQQIIKL-EPIRIVYVSCNPA-----TLARDSEA- 326 (358)
T ss_dssp ECCTTSCCSSSGGGTTCCSEEEECCCT---TC---------CHHHHHHHHHH-CCSEEEEEESCHH-----HHHHHHHH-
T ss_pred ecchhhhhhhhhhhhccCceEEeCCCC---cc---------HHHHHHHHHHc-CCCEEEEEeCCHH-----HHHHHHHH-
Confidence 887765432 22223468999999532 11 13567777765 8888999988731 11222222
Q ss_pred HHhCCCCceEEEEEeeecC
Q 041272 237 ARSLSVDDWICCKFQMLNR 255 (267)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~ 255 (267)
+-..+|.+.....++.
T Consensus 327 ---l~~~gy~l~~i~~~D~ 342 (358)
T d1uwva2 327 ---LLKAGYTIARLAMLDM 342 (358)
T ss_dssp ---HHHTTCEEEEEEEECC
T ss_pred ---HHHCCCeEeEEEEEec
Confidence 2235788888887776
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.52 E-value=7.2e-14 Score=109.44 Aligned_cols=120 Identities=11% Similarity=0.012 Sum_probs=82.4
Q ss_pred hHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe
Q 041272 79 LITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158 (267)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~ 158 (267)
.+.+..-.++...+..|.+|||+|||+|.+++.++.+ +++|+++|.++.+++.+++|++.++ ...++..
T Consensus 26 ~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~------ga~vv~vD~~~~a~~~~~~N~~~~~---~~~~v~~-- 94 (171)
T d1ws6a1 26 RLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE------GWEAVLVEKDPEAVRLLKENVRRTG---LGARVVA-- 94 (171)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT------TCEEEEECCCHHHHHHHHHHHHHHT---CCCEEEC--
T ss_pred HHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhc------cchhhhcccCHHHHhhhhHHHHhhc---cccceee--
Confidence 3444444455556778999999999999999998887 4789999999999999999999987 3344433
Q ss_pred cChhhhhh-cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHH--HhcccCCcEEEEEEe
Q 041272 159 MCHSRMEE-IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA--ERILIPGGLISMVVY 220 (267)
Q Consensus 159 ~~~~~l~~-~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~~ 220 (267)
.+...... ......+||+|++|+||--.. . +.+.++ ..+|+|||++++...
T Consensus 95 ~~~d~~~~~~~~~~~~fD~If~DPPY~~~~-------~----~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 95 LPVEVFLPEAKAQGERFTVAFMAPPYAMDL-------A----ALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCTTSCT-------T----HHHHHHHHHTCEEEEEEEEEEEE
T ss_pred eehhcccccccccCCccceeEEccccccCH-------H----HHHHHHHHcCCcCCCeEEEEEec
Confidence 33332211 122234799999998762111 1 233333 357999999877543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.2e-13 Score=115.57 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=92.1
Q ss_pred HhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccc----------------
Q 041272 88 WKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK---------------- 151 (267)
Q Consensus 88 ~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~---------------- 151 (267)
.......|.+|||+|||+|.+++..+... ..+|+|+|+|+.|++.+++++++.......
T Consensus 48 f~~g~~~g~~vLDiGcG~g~~~~~~~~~~-----~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 122 (263)
T d2g72a1 48 FATGEVSGRTLIDIGSGPTVYQLLSACSH-----FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGEC 122 (263)
T ss_dssp HHTSCSCCSEEEEETCTTCCGGGTTGGGG-----CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCC
T ss_pred cCCCCCCCcEEEEeccCCCHHHHHHhccc-----CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccch
Confidence 33344567899999999998886655442 258999999999999999987653210000
Q ss_pred ---------cce-EEEecChh---hhhhcCCCCCcEEEEEEeCCCCCCCCCceeec----hhhHHHHHHHHHhcccCCcE
Q 041272 152 ---------GLV-KLFNMCHS---RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT----SETTKMALEAAERILIPGGL 214 (267)
Q Consensus 152 ---------~~v-~~~~~~~~---~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~----~~~~~~~l~~~~~~LkpgG~ 214 (267)
..+ .....|.. .+.........||+|++.+ ++++ .++..++++++.++|||||.
T Consensus 123 ~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~---------~l~~i~~~~~~~~~~l~~~~~~LkPGG~ 193 (263)
T d2g72a1 123 WQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAF---------CLEAVSPDLASFQRALDHITTLLRPGGH 193 (263)
T ss_dssp HHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEES---------CHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHH---------HHHHHccCHHHHHHHHHHHHHHcCCCCE
Confidence 001 11111111 0111122234799998874 3322 34678999999999999999
Q ss_pred EEEEEecCCC----------CChhhHHHHHHHHHhCCCCceEEEEEeeecC
Q 041272 215 ISMVVYVGHP----------GGREELEAVEAFARSLSVDDWICCKFQMLNR 255 (267)
Q Consensus 215 l~i~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 255 (267)
|++....... ......+.+.+.++ ..+|+++.++....
T Consensus 194 li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~---~aGf~v~~~~~~~~ 241 (263)
T d2g72a1 194 LLLIGALEESWYLAGEARLTVVPVSEEEVREALV---RSGYKVRDLRTYIM 241 (263)
T ss_dssp EEEEEEESCCEEEETTEEEECCCCCHHHHHHHHH---HTTEEEEEEEEEEC
T ss_pred EEEecccCCcccccCCcccccCCCCHHHHHHHHH---HCCCeEEEEEEeec
Confidence 9987663321 01112344555555 46688776654433
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=6e-14 Score=123.52 Aligned_cols=121 Identities=14% Similarity=0.116 Sum_probs=79.8
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccc-----cccceEE-Ee
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA-----EKGLVKL-FN 158 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~-----~~~~v~~-~~ 158 (267)
+.+....+++|++|||||||+|..+..+|...+. ++|+|||+++.+++.|+++++..+... ....+.+ ..
T Consensus 207 ~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~----~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 207 DVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGC----ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCC----SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence 3344456899999999999999999999998753 699999999999999999987643100 0112222 11
Q ss_pred cChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 159 ~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
++..+.......-..+|+++.+- ....++....++++++.|||||+++...
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn----------~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNN----------FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECC----------TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred echhhccccccccccceEEEEec----------ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 11111100000001356666651 1224566789999999999999997654
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=1.6e-13 Score=118.38 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=81.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.+|++|||||||+|.+++.+|+. | ..+|+|+|.|+ +++.|+++.+.++ ...+++++.++..++ ..++
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~-G----a~~V~avd~s~-~~~~a~~~~~~~~---~~~~i~~i~~~~~~l---~~~~ 103 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKH-G----AKHVIGVDMSS-IIEMAKELVELNG---FSDKITLLRGKLEDV---HLPF 103 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-C----CSEEEEEESST-HHHHHHHHHHHTT---CTTTEEEEESCTTTS---CCSS
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHh-C----CCEEEEEeCCH-HHHHHHHHHHHhC---ccccceEEEeehhhc---cCcc
Confidence 457899999999999999988886 2 36999999996 6788999988887 578899998766544 3334
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
.++|+|++.... ...........++....++|||||+++
T Consensus 104 ~~~D~i~se~~~------~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 104 PKVDIIISEWMG------YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCEEEEEECCCB------TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred cceeEEEEEecc------eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 589999987421 111223445678888899999999985
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=2.1e-13 Score=116.96 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=81.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.+|++|||||||+|.+++.+|+. | +.+|+|+|.|+. ...|+++++.++ ...++.+++++..++. .+.
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~-G----a~~V~avd~s~~-~~~a~~~~~~n~---~~~~v~~~~~~~~~~~---~~~ 98 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKA-G----ARKVIGIECSSI-SDYAVKIVKANK---LDHVVTIIKGKVEEVE---LPV 98 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEEECSTT-HHHHHHHHHHTT---CTTTEEEEESCTTTCC---CSS
T ss_pred cCCcCEEEEEecCCcHHHHHHHHh-C----CCEEEEEcCcHH-HhhhhhHHHHhC---CccccceEeccHHHcc---ccc
Confidence 457899999999999999999986 3 368999999975 577788888777 5678999987765543 334
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
.++|+|++.... .........+.++..+.++|||||+++
T Consensus 99 ~~~D~ivs~~~~------~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 99 EKVDIIISEWMG------YCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp SCEEEEEECCCB------BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ceeEEEeeeeee------eeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 579999987321 111223445789999999999999986
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.2e-12 Score=106.23 Aligned_cols=110 Identities=14% Similarity=0.209 Sum_probs=90.0
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh-hcC--C
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME-EIV--P 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~-~~~--~ 169 (267)
....+|||+|||+|+.++.+|+.++. +++|+++|.+++..+.|+++++..+ ...+++++.++..+.. ... .
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~---~g~i~tie~~~~~~~~A~~~~~~ag---~~~~i~~~~Gda~e~l~~~~~~~ 131 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPA---DGRVVTCEVDAQPPELGRPLWRQAE---AEHKIDLRLKPALETLDELLAAG 131 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCT---TCEEEEEESCSHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHTT
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCC---CceEEEEeechhHHHHHHHHHHhcC---ccceEEEEEeehhhcchhhhhhc
Confidence 35679999999999999999998865 6899999999999999999999988 5788999998876543 322 2
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...+||+|+.+. ....+...++.+.++|+|||++++-..
T Consensus 132 ~~~~fD~ifiD~------------dk~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 132 EAGTFDVAVVDA------------DKENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp CTTCEEEEEECS------------CSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred ccCCccEEEEeC------------CHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 345799999983 124557888999999999999987543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.39 E-value=3.3e-12 Score=100.76 Aligned_cols=110 Identities=17% Similarity=0.119 Sum_probs=85.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~~ 171 (267)
..|.+|||++||+|.+++.++.+- ..+|++||.++.+++.+++|++..+ ...++++++.|...+.. .....
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srG-----a~~v~~ve~~~~a~~~~~~N~~~~~---~~~~~~i~~~D~~~~l~~~~~~~ 111 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRG-----MDKSICIEKNFAALKVIKENIAITK---EPEKFEVRKMDANRALEQFYEEK 111 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHHTT
T ss_pred cCCCEEEEcccccccccceeeecc-----hhHHHHHHHHHHHHHHHHHHhhhhh---cccccccccccchhhhhhhcccC
Confidence 368899999999999999999872 3589999999999999999999877 45689999988876544 33334
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHH--hcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE--RILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 220 (267)
.+||+|+.|+||-. ......++.+. .+|+++|++++...
T Consensus 112 ~~fDlIflDPPY~~----------~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 112 LQFDLVLLDPPYAK----------QEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp CCEEEEEECCCGGG----------CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCcceEEechhhhh----------hHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 57999999987611 22346677765 46999999876543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.2e-12 Score=111.86 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=78.6
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++++|||||||+|.+++.+|+. | ..+|+|+|.|+.+.. |+++..+++ ...++.++.++..++. .+
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~-G----a~~V~aid~s~~~~~-a~~~~~~~~---~~~~i~~~~~~~~~l~---~~ 99 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKA-G----AKKVLGVDQSEILYQ-AMDIIRLNK---LEDTITLIKGKIEEVH---LP 99 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEEESSTHHHH-HHHHHHHTT---CTTTEEEEESCTTTSC---CS
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHc-C----CCEEEEEeCHHHHHH-HHHHHHHhC---CCccceEEEeeHHHhc---Cc
Confidence 3457899999999999999999986 2 368999999998864 566666655 4688999987765543 33
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
..+||+|++.... ...........++....++|||||+++
T Consensus 100 ~~~~D~Ivse~~~------~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 100 VEKVDVIISEWMG------YFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp CSCEEEEEECCCB------TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred cccceEEEEeeee------eecccccccHHHHHHHHhcCCCCcEEe
Confidence 4589999987321 011112334567777788999999996
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=7.5e-13 Score=107.20 Aligned_cols=108 Identities=11% Similarity=0.148 Sum_probs=84.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC---CC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV---PK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~---~~ 170 (267)
...+|||+|||+|+.++.+|+.++. +++|+++|+++++++.|+++++..+ ...+++++.++..+....+ ..
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~---~g~v~sid~~~~~~~~a~~~~~~~g---l~~~i~l~~Gd~~e~l~~l~~~~~ 129 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQP---GARLLTMEMNPDYAAITQQMLNFAG---LQDKVTILNGASQDLIPQLKKKYD 129 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCT---TCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHGGGHHHHSC
T ss_pred CCCEEEEEccCchhHHHHHHHhCCC---ccEEEEEeccHHHHHHHHHHHHHcC---CCccceeeeccccccccchhhccc
Confidence 3469999999999999999998765 6899999999999999999999888 5678999998887653322 12
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
...||+++.+- .+........+.+..++|||||++++
T Consensus 130 ~~~~D~ifiD~----------~~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 130 VDTLDMVFLDH----------WKDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp CCCEEEEEECS----------CGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ccccceeeecc----------cccccccHHHHHHHhCccCCCcEEEE
Confidence 24799999872 11112223457778899999998765
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=7.4e-12 Score=98.79 Aligned_cols=106 Identities=15% Similarity=0.088 Sum_probs=82.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||++||+|.++++++.+- ..+|+.||.++.+++.+++|++..+ ..+++++..|..++... .+..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrG-----a~~v~~VE~~~~a~~~~k~N~~~~~----~~~~~ii~~d~~~~l~~--~~~~ 111 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRY-----AAGATLIEMDRAVSQQLIKNLATLK----AGNARVVNSNAMSFLAQ--KGTP 111 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-----CSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCHHHHHSS--CCCC
T ss_pred chhhhhhhhccccceeeeEEecC-----cceeEEEEEeechhhHHHHHHhhcc----ccceeeeeecccccccc--cccc
Confidence 57899999999999999988872 3589999999999999999998876 57788888777655432 3458
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHH--hcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAE--RILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 220 (267)
||+|+.|+||-. ......+..+. .+|+++|++++...
T Consensus 112 fDlIf~DPPY~~----------~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 112 HNIVFVDPPFRR----------GLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp EEEEEECCSSST----------TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cCEEEEcCcccc----------chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 999999987621 12245565554 46999999988654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.33 E-value=6.1e-12 Score=100.77 Aligned_cols=74 Identities=24% Similarity=0.291 Sum_probs=61.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.|.+|||+|||+|.+++.++.+ + ..+|+|+|+++.+++.|++|++.++ .+.+++..+...+ +.+
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~-g----~~~v~~vdi~~~~~~~a~~N~~~~~-----~~~~~~~~d~~~~------~~~ 109 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLL-G----AKEVICVEVDKEAVDVLIENLGEFK-----GKFKVFIGDVSEF------NSR 109 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHTGGGT-----TSEEEEESCGGGC------CCC
T ss_pred CCCEEEECcCcchHHHHHHHHc-C----CCEEEEEcCcHHHHHHHHHHHHHcC-----CCceEEECchhhh------CCc
Confidence 5789999999999999988875 2 3699999999999999999998866 4677777665433 347
Q ss_pred EEEEEEeCCC
Q 041272 174 VRLVAFNLGY 183 (267)
Q Consensus 174 ~d~ii~~~~~ 183 (267)
||+|++|++|
T Consensus 110 fD~Vi~nPP~ 119 (201)
T d1wy7a1 110 VDIVIMNPPF 119 (201)
T ss_dssp CSEEEECCCC
T ss_pred CcEEEEcCcc
Confidence 9999999877
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.30 E-value=5e-12 Score=102.95 Aligned_cols=107 Identities=10% Similarity=0.159 Sum_probs=89.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCC---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVP--- 169 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~--- 169 (267)
...+|||+||++|+.++.+|+.++. +++|+.+|.+++..+.|++++++.+ ...+++++.++..+... ...
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~---~g~v~tie~~~~~~~~A~~~~~~~g---~~~~i~~~~g~a~~~L~~l~~~~~ 132 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPE---DGKILAMDINKENYELGLPVIKKAG---VDHKIDFREGPALPVLDEMIKDEK 132 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCT---TCEEEEEESCCHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHCGG
T ss_pred CCCcEEEecchhhhhHHHHHhhCCC---CcEEEEEeccchhHHHHHHHHHHhc---cccceeeeehHHHHHHHHHHhccc
Confidence 4579999999999999999999875 6899999999999999999999988 57789999988875543 221
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
...+||+|+.|. ....+...++.+.++|+|||++++-
T Consensus 133 ~~~~fD~iFiDa------------~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 133 NHGSYDFIFVDA------------DKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp GTTCBSEEEECS------------CSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred cCCceeEEEecc------------chhhhHHHHHHHHhhcCCCcEEEEc
Confidence 134799999983 1245678999999999999999774
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.29 E-value=1.1e-11 Score=98.65 Aligned_cols=70 Identities=23% Similarity=0.242 Sum_probs=57.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.|++|||+|||+|.+++.++.. + ..+|+|+|+++.+++.|++|+. ++++++.|..++ +..
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~-g----a~~V~~vDid~~a~~~ar~N~~---------~~~~~~~D~~~l------~~~ 107 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLL-G----AESVTAFDIDPDAIETAKRNCG---------GVNFMVADVSEI------SGK 107 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-T----BSEEEEEESCHHHHHHHHHHCT---------TSEEEECCGGGC------CCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHc-C----CCcccccccCHHHHHHHHHccc---------cccEEEEehhhc------CCc
Confidence 5889999999999999888775 2 3689999999999999999753 467777665443 247
Q ss_pred EEEEEEeCCC
Q 041272 174 VRLVAFNLGY 183 (267)
Q Consensus 174 ~d~ii~~~~~ 183 (267)
||+|++|+||
T Consensus 108 fD~Vi~NPPf 117 (197)
T d1ne2a_ 108 YDTWIMNPPF 117 (197)
T ss_dssp EEEEEECCCC
T ss_pred ceEEEeCccc
Confidence 9999999876
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=99.24 E-value=4.9e-11 Score=93.66 Aligned_cols=130 Identities=25% Similarity=0.268 Sum_probs=96.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC-
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP- 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~- 169 (267)
.+++|+.++|..+|.|..+..+.+. +++|+|+|.++++++.|++.. ..++.++++...++.+.+.
T Consensus 15 ~~~~g~~~vD~T~G~GGhs~~iL~~------~~~viaiD~D~~ai~~a~~~~--------~~~~~~~~~~f~~~~~~l~~ 80 (182)
T d1wg8a2 15 AVRPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAVARAKGLH--------LPGLTVVQGNFRHLKRHLAA 80 (182)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHTC--------CTTEEEEESCGGGHHHHHHH
T ss_pred CCCCCCEEEEeCCCCcHHHHHHhcc------cCcEEEEhhhhhHHHHHhhcc--------ccceeEeehHHHHHHHHHHH
Confidence 4689999999999999999999886 479999999999999998642 3678999988888876532
Q ss_pred -CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHh
Q 041272 170 -KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARS 239 (267)
Q Consensus 170 -~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 239 (267)
....+|.|++|+|+-...-.............|....+.|+|||.+++..+. ..+.+.+..++++
T Consensus 81 ~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh-----s~Ed~ivk~~~~e 146 (182)
T d1wg8a2 81 LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH-----SLEDRVVKRFLRE 146 (182)
T ss_dssp TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS-----HHHHHHHHHHHHH
T ss_pred cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc-----cchhHHHHHHHhh
Confidence 2347999999988722210001112234466889999999999999999883 2344556666654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.19 E-value=1.8e-10 Score=90.68 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=82.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||+.||||.++++++.+- ..+|+.||.+..+++..++|++..+. ......++..+..++.........
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRG-----A~~v~fVE~~~~a~~~ik~Ni~~l~~--~~~~~~~~~~d~~~~l~~~~~~~~ 115 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQ-----AKKVTFLELDKTVANQLKKNLQTLKC--SSEQAEVINQSSLDFLKQPQNQPH 115 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-----CSEEEEECSCHHHHHHHHHHHHHTTC--CTTTEEEECSCHHHHTTSCCSSCC
T ss_pred ccceEeecccCccceeeeeeeec-----ceeeEEeecccchhhhHhhHHhhhcc--cccccccccccccccccccccCCc
Confidence 57799999999999999999872 46999999999999999999988651 123456666665555544444457
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHH--hcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAE--RILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 220 (267)
||+|+.|+||-- ......++.+. .+|+++|++++...
T Consensus 116 fDlIFlDPPY~~----------~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 116 FDVVFLDPPFHF----------NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp EEEEEECCCSSS----------CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccEEEechhHhh----------hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 999999988721 22345666665 47999999987654
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.13 E-value=1.7e-09 Score=92.48 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=84.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCC-CCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADE-SSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~-~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+++.+|||.+||+|.+...+.+++... .+..+++|+|+++.+++.|+.++...+ .+..+...+. ... ..
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-----~~~~~~~~d~---~~~-~~ 185 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-----QKMTLLHQDG---LAN-LL 185 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-----CCCEEEESCT---TSC-CC
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-----hhhhhhcccc---ccc-cc
Confidence 3466799999999999999988765321 124589999999999999999988765 3444554332 111 12
Q ss_pred CCcEEEEEEeCCCCCCCCCce---------eechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSV---------ITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~---------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
...||+|++|+||-....... .........++..+.+.|+|||+++++.+.+
T Consensus 186 ~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 186 VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 347999999998832211110 0011223468999999999999999888754
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1e-09 Score=92.56 Aligned_cols=139 Identities=15% Similarity=0.146 Sum_probs=95.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..++|++|||+++|+|.-|..+|..++. .++|+++|+++.-++..++++++.+ ..++.+...+...+......
T Consensus 91 ~~~~g~~vLD~cAapGgKt~~la~l~~~---~~~i~a~d~~~~R~~~l~~~l~r~g----~~~~~~~~~d~~~~~~~~~~ 163 (293)
T d2b9ea1 91 DPPPGSHVIDACAAPGNKTSHLAALLKN---QGKIFAFDLDAKRLASMATLLARAG----VSCCELAEEDFLAVSPSDPR 163 (293)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGSCTTCGG
T ss_pred CCCccceEEecccchhhHHHHHHHHhcC---CceEeeecCCHHHHHHHHHHHHhcC----ccceeeeehhhhhhcccccc
Confidence 4578999999999999999999998765 6899999999999999999999988 67888887666555443333
Q ss_pred CCcEEEEEEeCCC-----CCCC-CCce---------eechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhh-HHHHH
Q 041272 171 STAVRLVAFNLGY-----LPGG-DKSV---------ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREE-LEAVE 234 (267)
Q Consensus 171 ~~~~d~ii~~~~~-----lp~~-d~~~---------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~ 234 (267)
...||.|+.|++. +... +... ........+++..+.. |+|||.++.+++. -..+| ...++
T Consensus 164 ~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~-l~~gG~lvYsTCS---l~~~ENe~vV~ 239 (293)
T d2b9ea1 164 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FPSLQRLVYSTCS---LCQEENEDVVR 239 (293)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTT-CTTCCEEEEEESC---CCGGGTHHHHH
T ss_pred cceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhhh-cccccEEEEeecc---CChhHhHHHHH
Confidence 3479999999754 1110 0000 0012233557777774 7999988766653 23334 44555
Q ss_pred HHHHhC
Q 041272 235 AFARSL 240 (267)
Q Consensus 235 ~~~~~l 240 (267)
.+++..
T Consensus 240 ~~L~~~ 245 (293)
T d2b9ea1 240 DALQQN 245 (293)
T ss_dssp HHHTTS
T ss_pred HHHHhC
Confidence 666553
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.4e-09 Score=91.26 Aligned_cols=139 Identities=13% Similarity=0.087 Sum_probs=96.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..++|.+|||+++|.|.-|..+++... +++|+++|+++..++..++++++.+ ..++.....+........
T Consensus 99 ~~~~g~~vLD~CAaPGgKt~~la~l~~----~~~i~a~d~~~~R~~~l~~~~~r~g----~~~~~~~~~~~~~~~~~~-- 168 (284)
T d1sqga2 99 APQNGEHILDLCAAPGGKTTHILEVAP----EAQVVAVDIDEQRLSRVYDNLKRLG----MKATVKQGDGRYPSQWCG-- 168 (284)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCT----TCEEEEEESSTTTHHHHHHHHHHTT----CCCEEEECCTTCTHHHHT--
T ss_pred CccccceeEeccCccccchhhhhhhhh----hhhhhhhhcchhhhhhHhhhhhccc----ccceeeeccccccchhcc--
Confidence 457899999999999999999998753 4899999999999999999999988 445555443332222122
Q ss_pred CCcEEEEEEeCCC-----CCCCCCceee--------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGY-----LPGGDKSVIT--------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~-----lp~~d~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
...||.|+.|.+. +......... ......++|.++.+.|||||+++.+++.-. ..|....++.++
T Consensus 169 ~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~--~~ENE~vv~~~l 246 (284)
T d1sqga2 169 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL--PEENSLQIKAFL 246 (284)
T ss_dssp TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC--GGGTHHHHHHHH
T ss_pred cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc--hhhCHHHHHHHH
Confidence 2469999999755 2221111111 123347899999999999999988776432 233344566677
Q ss_pred HhCC
Q 041272 238 RSLS 241 (267)
Q Consensus 238 ~~l~ 241 (267)
+...
T Consensus 247 ~~~~ 250 (284)
T d1sqga2 247 QRTA 250 (284)
T ss_dssp HHCT
T ss_pred HhCC
Confidence 7644
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.06 E-value=9.1e-10 Score=90.40 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=73.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
....+|||||||+|.++..++++. |+.+++.+|+ |+.++.+ . ...+++++.+|.. +..+
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~----P~l~~~v~Dl-p~vi~~~-------~---~~~ri~~~~gd~~---~~~p--- 138 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKY----PLIKGINFDL-PQVIENA-------P---PLSGIEHVGGDMF---ASVP--- 138 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC----TTCEEEEEEC-HHHHTTC-------C---CCTTEEEEECCTT---TCCC---
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC----CCCeEEEecc-hhhhhcc-------C---CCCCeEEecCCcc---cccc---
Confidence 445799999999999999999995 5699999997 4443321 1 2578999876652 3222
Q ss_pred cEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..|++++. .++|. .++..++|+++++.|+|||+++|.+..
T Consensus 139 ~~D~~~l~---------~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v 180 (244)
T d1fp1d2 139 QGDAMILK---------AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI 180 (244)
T ss_dssp CEEEEEEE---------SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cceEEEEe---------hhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 35877776 34443 245678999999999999999998864
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.01 E-value=6.2e-09 Score=88.38 Aligned_cols=137 Identities=17% Similarity=0.224 Sum_probs=97.6
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..++|++|||+++|+|.-+..++...+. .+.++++|+++.-+...++++++.+ ..++.+...+...+...
T Consensus 113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~---~~~i~a~d~~~~r~~~l~~~~~r~~----~~~i~~~~~d~~~~~~~--- 182 (313)
T d1ixka_ 113 DPKPGEIVADMAAAPGGKTSYLAQLMRN---DGVIYAFDVDENRLRETRLNLSRLG----VLNVILFHSSSLHIGEL--- 182 (313)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTT---CSEEEEECSCHHHHHHHHHHHHHHT----CCSEEEESSCGGGGGGG---
T ss_pred cCCccceeeecccchhhhhHhhhhhccc---ccceeeeccCHHHHHHHHHHHHHHH----hhccccccccccccccc---
Confidence 4678999999999999999999998765 6899999999999999999999988 57777776665444332
Q ss_pred CCcEEEEEEeCCCCCC-----CCCceee--------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhH-HHHHHH
Q 041272 171 STAVRLVAFNLGYLPG-----GDKSVIT--------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREEL-EAVEAF 236 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~-----~d~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~ 236 (267)
+..||.|+.|++.--. ....... ......+++.++.+.|||||.++.+++.- ..+|. ..+..+
T Consensus 183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl---~~eENE~VV~~~ 259 (313)
T d1ixka_ 183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL---EPEENEFVIQWA 259 (313)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC---CGGGTHHHHHHH
T ss_pred cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC---ChHhHHHHHHHH
Confidence 3479999999754111 1100000 12334788999999999999988777632 33343 444555
Q ss_pred HHhC
Q 041272 237 ARSL 240 (267)
Q Consensus 237 ~~~l 240 (267)
++..
T Consensus 260 L~~~ 263 (313)
T d1ixka_ 260 LDNF 263 (313)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 5543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.99 E-value=1.5e-09 Score=87.19 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=82.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
.+++.+|||.|||+|.++..+.+..+. ..+++|+|+++.+++.++ +..+++++... . ...
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~---~~~i~g~ei~~~~~~~~~-------------~~~~~~~~~~~---~-~~~ 76 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGT---AYRFVGVEIDPKALDLPP-------------WAEGILADFLL---W-EPG 76 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCS---CSEEEEEESCTTTCCCCT-------------TEEEEESCGGG---C-CCS
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccc---cceEEeeecCHHHHhhcc-------------cceeeeeehhc---c-ccc
Confidence 467889999999999999988877654 578999999987654432 23344443322 1 123
Q ss_pred CcEEEEEEeCCCCCCCCCceee--------------------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHH
Q 041272 172 TAVRLVAFNLGYLPGGDKSVIT--------------------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELE 231 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~--------------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 231 (267)
..||+++.|+++.......... .......++..+.+.|||||+++++...+.-... ..+
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~-~~~ 155 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLE-DFA 155 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCG-GGH
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCc-chH
Confidence 4799999999874332111110 0112356788999999999999998875433222 234
Q ss_pred HHHHHHHh
Q 041272 232 AVEAFARS 239 (267)
Q Consensus 232 ~~~~~~~~ 239 (267)
.+.+++.+
T Consensus 156 ~lR~~l~~ 163 (223)
T d2ih2a1 156 LLREFLAR 163 (223)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 45555543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.97 E-value=8.9e-09 Score=87.27 Aligned_cols=120 Identities=17% Similarity=0.086 Sum_probs=85.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-cccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS-KAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+...+||.||.|.|..+..+++..+ ..+|++||+++++++.|++.+...+. .....+++++.+|........ +
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~----~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~--~ 149 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPT----VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT--E 149 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT----CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC--C
T ss_pred CCcceEEEeCCCchHHHHHHHhcCC----cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc--C
Confidence 4557999999999999999887643 47999999999999999998754211 112468999988887665543 3
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|+.++......+.. ...-...++++.+.+.|+|||++++...
T Consensus 150 ~~yDvIi~D~~dp~~~~~~--~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 150 ERYDVVIIDLTDPVGEDNP--ARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp CCEEEEEEECCCCBSTTCG--GGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CcccEEEEeCCCcccccch--hhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 4799999995321111100 0001126899999999999999987553
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.97 E-value=5.4e-09 Score=85.14 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=62.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++++|||||||+|.+|..|++. +.+|++||+++.+++..+++... ..+++++++|..++. .+
T Consensus 18 ~~~~~d~VlEIGpG~G~LT~~Ll~~------~~~v~avE~D~~l~~~l~~~~~~------~~n~~i~~~D~l~~~---~~ 82 (235)
T d1qama_ 18 RLNEHDNIFEIGSGKGHFTLELVQR------CNFVTAIEIDHKLCKTTENKLVD------HDNFQVLNKDILQFK---FP 82 (235)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHTTT------CCSEEEECCCGGGCC---CC
T ss_pred CCCCCCeEEEECCCchHHHHHHHhC------cCceEEEeeccchHHHHHHHhhc------ccchhhhhhhhhhcc---cc
Confidence 4678999999999999999999987 47899999999999999987765 468999987775442 12
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
......+++|+||
T Consensus 83 ~~~~~~vv~NLPY 95 (235)
T d1qama_ 83 KNQSYKIFGNIPY 95 (235)
T ss_dssp SSCCCEEEEECCG
T ss_pred ccccceeeeeehh
Confidence 2233468899877
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.90 E-value=2.3e-08 Score=83.26 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=82.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc------cccccceEEEecChhhhh
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS------KAEKGLVKLFNMCHSRME 165 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~------~~~~~~v~~~~~~~~~l~ 165 (267)
.+...+||.||.|.|..+..+.++ + ..+|+.||+++.+++.|++....... ....++++++.+|.....
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~-~----~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l 144 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQH-D----VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI 144 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS-C----CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH
T ss_pred CCCCceEEEecCCchHHHHHHHHh-C----CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH
Confidence 345679999999999999888764 2 36899999999999999987643210 002468999988876554
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.. +..||+|+.++.. |.. . ...-...++++.+.+.|+|||++++...
T Consensus 145 ~~---~~~yDvIi~D~~~-~~~--~--~~~L~t~eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 145 KN---NRGFDVIIADSTD-PVG--P--AKVLFSEEFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp HH---CCCEEEEEEECCC-CC---------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hc---cCCCCEEEEeCCC-CCC--C--cccccCHHHHHhhHhhcCCCceEEEecC
Confidence 42 3579999999533 111 0 0011126899999999999999987654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.88 E-value=2.6e-08 Score=83.48 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=86.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+...+||-||-|.|..+..+.++.+ ..+|++||+++++++.|++...........++++++.+|......... +.
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~----~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~-~~ 153 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHAS----IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA-EG 153 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC-TT
T ss_pred CCCcceEEecCCchHHHHHHHhccc----ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhcc-cc
Confidence 3456999999999999999988743 368999999999999999987543222235789998887765554332 24
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|+.++.. |.. . ...-...++++.+.+.|+|||++++...
T Consensus 154 ~yDvIi~D~~d-p~~--~--~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 154 SYDAVIVDSSD-PIG--P--AKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp CEEEEEECCCC-TTS--G--GGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CccEEEEcCCC-CCC--c--chhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 79999999532 111 0 0111236899999999999999987654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.86 E-value=2.6e-08 Score=82.82 Aligned_cols=116 Identities=14% Similarity=0.064 Sum_probs=85.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+...+||-||-|.|..+..+.++.+ ..+|+.||++++.++.|++....+......++++++.+|........ +.
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~----~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~--~~ 147 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPS----VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS--EN 147 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTT----CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC--CS
T ss_pred CCcceEEecCCCCcHHHHHHHhcCC----cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc--CC
Confidence 4557999999999999999998643 37999999999999999998754321122578999888776554433 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.||+|+.++.. |..... + -...++++.+.+.|+|||+++...
T Consensus 148 ~yDvIi~D~~~-p~~~~~--~--L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 148 QYDVIMVDSTE-PVGPAV--N--LFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp CEEEEEESCSS-CCSCCC--C--CSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCEEEEcCCC-CCCcch--h--hccHHHHHHHHhhcCCCceEEEec
Confidence 79999999633 111100 0 113589999999999999997654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=3.2e-08 Score=82.97 Aligned_cols=118 Identities=11% Similarity=0.052 Sum_probs=84.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+...+||-||.|.|..+..++++.+ ..+|++||+++++++.|++.+.........++++++.+|........ +.
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~----~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~--~~ 161 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDS----VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF--KN 161 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT----CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC--SS
T ss_pred CCCceEEEecCCchHHHHHHHhcCC----CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC--CC
Confidence 3457999999999999999988643 47899999999999999998765431122478999988877655433 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|+.++..-..... ..-...++++.+.+.|+|||++++...
T Consensus 162 ~yDvIi~D~~dp~~~~~----~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 162 EFDVIIIDSTDPTAGQG----GHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp CEEEEEEEC--------------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCEEEEcCCCCCcCch----hhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 79999999532100000 001136899999999999999976543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.86 E-value=1.1e-07 Score=76.98 Aligned_cols=123 Identities=14% Similarity=0.097 Sum_probs=91.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|+|+|+|.|.-++.+|-.. |+.+|+.+|.+..-+...+.-..+.+ ..++.+++...+++.........
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~----p~~~v~Lves~~KK~~FL~~v~~~L~----L~n~~i~~~R~E~~~~~~~~~~~ 141 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICF----PHLHVTIVDSLNKRITFLEKLSEALQ----LENTTFCHDRAETFGQRKDVRES 141 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC----TTCEEEEEESCHHHHHHHHHHHHHHT----CSSEEEEESCHHHHTTCTTTTTC
T ss_pred CCCeEEeecCCCchHHHHHHHhC----CCccceeecchHHHHHHHHHHHHHhC----CCCcEEEeehhhhcccccccccc
Confidence 56799999999999999999875 46899999999999999888888877 67889888777666543322347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhC
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l 240 (267)
||+|++-. ......+++-+..++++||.+++.-- . ...+|.+...+....+
T Consensus 142 ~D~v~sRA-------------va~l~~ll~~~~~~l~~~g~~i~~KG--~-~~~~El~~a~~~~~~~ 192 (239)
T d1xdza_ 142 YDIVTARA-------------VARLSVLSELCLPLVKKNGLFVALKA--A-SAEEELNAGKKAITTL 192 (239)
T ss_dssp EEEEEEEC-------------CSCHHHHHHHHGGGEEEEEEEEEEEC--C--CHHHHHHHHHHHHHT
T ss_pred ceEEEEhh-------------hhCHHHHHHHHhhhcccCCEEEEECC--C-ChHHHHHHHHHHHHHc
Confidence 99999873 12335788889999999999866543 2 2334444444444443
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=3.1e-08 Score=82.72 Aligned_cols=117 Identities=12% Similarity=0.055 Sum_probs=84.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+...+||-||-|.|..+..+.++.+ ..+|+.+|+++++++.|++.+..+......++++++.+|........ ..
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~----~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~--~~ 150 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPS----VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN--QD 150 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC--SS
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCC----cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC--CC
Confidence 4557999999999999999987643 37999999999999999998764321123578999988876555432 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|+.++.. |.. . ...-...++++.+.+.|+|||++++...
T Consensus 151 ~yDvIi~D~~~-p~~--~--~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 151 AFDVIITDSSD-PMG--P--AESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp CEEEEEEECC----------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEcCCC-CCC--c--ccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 79999999532 111 0 0111235889999999999999987765
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=7.1e-09 Score=80.97 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=79.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh----
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---- 166 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---- 166 (267)
.++++.+||||||++|.++..+++..+. ..+|+|+|+.+- + ...++.+++++..+...
T Consensus 19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~---~~~v~~vDl~~~---------~------~i~~~~~~~~d~~~~~~~~~~ 80 (180)
T d1ej0a_ 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGG---KGRIIACDLLPM---------D------PIVGVDFLQGDFRDELVMKAL 80 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCT---TCEEEEEESSCC---------C------CCTTEEEEESCTTSHHHHHHH
T ss_pred ccCCCCeEEEEeccCCcceEEEEeeccc---cceEEEeecccc---------c------ccCCceEeecccccchhhhhh
Confidence 4689999999999999999999998765 689999998761 1 14567778776654322
Q ss_pred -cCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 167 -IVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 167 -~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.......+|+|++|...--.......+ ...-....+.-+.+.||+||.+++-.+.+
T Consensus 81 ~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g 139 (180)
T d1ej0a_ 81 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred hhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence 111234799999996542222222222 12333567778899999999999999853
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.83 E-value=1.1e-08 Score=80.81 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=67.0
Q ss_pred CCEEEEecCCCChHH----HHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-----------------------
Q 041272 95 GDTVVDATCGNGYDT----LMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS----------------------- 147 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~----~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~----------------------- 147 (267)
.-+|+++|||+|.-. ..+.+.........+|+|+|+|+.+++.|++-.-....
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~ 104 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 104 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence 349999999999743 33444322211235899999999999999854311100
Q ss_pred ----cccccceEEEecChhhhhh-cCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEE
Q 041272 148 ----KAEKGLVKLFNMCHSRMEE-IVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 148 ----~~~~~~v~~~~~~~~~l~~-~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
......+.+.. .++.. ..+....||+|++-- ++. ..+...++++++++.|+|||+|++
T Consensus 105 ~~~~~~~~~~v~~~~---~~~~~~~~~~~~~fDvI~CRN---------VLiYf~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 105 VRVRQELANYVEFSS---VNLLEKQYNVPGPFDAIFCRN---------VMIYFDKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp EEECHHHHTTEEEEE---CCTTCSSCCCCCCEEEEEECS---------SGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eehHHHHHHHHHHhh---hhccccccCCCCCccEEEeeh---------hHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 00001112211 11111 122235799998872 332 456678999999999999999865
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.82 E-value=1.1e-08 Score=83.88 Aligned_cols=132 Identities=11% Similarity=0.136 Sum_probs=86.9
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
....+|||||||+|..+..+++++ |+.+++..|. ++.++.+ + ...+++++.+|..+ ..+
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~----P~l~~~v~Dl-p~vi~~~-------~---~~~rv~~~~gD~f~---~~p--- 137 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETF----PKLKCIVFDR-PQVVENL-------S---GSNNLTYVGGDMFT---SIP--- 137 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC----TTCEEEEEEC-HHHHTTC-------C---CBTTEEEEECCTTT---CCC---
T ss_pred cCceEEEEecCCccHHHHHHHHhC----CCCeEEEecC-HHHHHhC-------c---ccCceEEEecCccc---CCC---
Confidence 345689999999999999999995 5699999998 4444332 1 25789999876532 222
Q ss_pred cEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCC---cEEEEEEecCCCCChh-hH----------------
Q 041272 173 AVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPG---GLISMVVYVGHPGGRE-EL---------------- 230 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~Lkpg---G~l~i~~~~~~~~~~~-~~---------------- 230 (267)
..|++++. .++|. .+...++|+++++.|+|| |+++|.+..-...... ..
T Consensus 138 ~aD~~~l~---------~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G 208 (244)
T d1fp2a2 138 NADAVLLK---------YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNG 208 (244)
T ss_dssp CCSEEEEE---------SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTC
T ss_pred CCcEEEEE---------eecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 35777666 34543 244578999999999999 7788776432221110 00
Q ss_pred --HHHHHHHHhCCCCceEEEEEeeec
Q 041272 231 --EAVEAFARSLSVDDWICCKFQMLN 254 (267)
Q Consensus 231 --~~~~~~~~~l~~~~~~~~~~~~~~ 254 (267)
+..++|.+.+...+|+..+.....
T Consensus 209 ~ert~~e~~~ll~~AGf~~~~i~~~~ 234 (244)
T d1fp2a2 209 KERNEEEWKKLFIEAGFQHYKISPLT 234 (244)
T ss_dssp CCEEHHHHHHHHHHTTCCEEEEEEEE
T ss_pred cCCCHHHHHHHHHHcCCceEEEEECC
Confidence 012455555666788887766554
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.80 E-value=5.1e-08 Score=82.11 Aligned_cols=116 Identities=15% Similarity=0.050 Sum_probs=82.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+...+||-||-|.|..+..+.++.+ ..+|+.||+++++++.|++.+..+......++++++.+|........ ..
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~----v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~--~~ 178 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHES----VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH--KN 178 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT----CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC--TT
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCC----cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC--CC
Confidence 4457999999999999999998643 36999999999999999998765432223578999988877655443 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.||+|+.++.. |... ...-...++++.+.+.|+|||+++...
T Consensus 179 ~yDvII~D~~d-p~~~----~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 179 EFDVIITDSSD-PVGP----AESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp CEEEEEECCC------------------HHHHHHHHEEEEEEEEEEC
T ss_pred CCCEEEEcCCC-CCCc----chhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 79999999532 1110 011223689999999999999997754
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.79 E-value=1.8e-09 Score=88.53 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=63.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++++|||||||+|.+|..|++. +.+|++||+++.+++.++++... ..+++++++|..++. .+
T Consensus 26 ~~~~~d~VLEIGpG~G~LT~~L~~~------~~~v~aIE~D~~l~~~l~~~~~~------~~n~~ii~~D~l~~~---~~ 90 (245)
T d1yuba_ 26 NLKETDTVYEIGTGKGHLTTKLAKI------SKQVTSIELDSHLFNLSSEKLKL------NTRVTLIHQDILQFQ---FP 90 (245)
T ss_dssp CCCSSEEEEECSCCCSSCSHHHHHH------SSEEEESSSSCSSSSSSSCTTTT------CSEEEECCSCCTTTT---CC
T ss_pred CCCCCCeEEEECCCccHHHHHHHhh------cCceeEeeecccchhhhhhhhhh------ccchhhhhhhhhccc---cc
Confidence 4678899999999999999999998 47999999999999988877654 468999987765542 23
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
....+.+++|++|
T Consensus 91 ~~~~~~vv~NLPY 103 (245)
T d1yuba_ 91 NKQRYKIVGNIPY 103 (245)
T ss_dssp CSSEEEEEEECCS
T ss_pred cceeeeEeeeeeh
Confidence 3467889999877
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=8.8e-08 Score=76.14 Aligned_cols=101 Identities=8% Similarity=0.024 Sum_probs=81.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|+|+|||.|.-++.+|-.. |+.+|+.+|.+..-+...++-..+.+ ..|+++++...+++. .+.+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~----p~~~~~Lves~~KK~~FL~~~~~~L~----L~nv~v~~~R~E~~~----~~~~ 132 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVR----PEAHFTLLDSLGKRVRFLRQVQHELK----LENIEPVQSRVEEFP----SEPP 132 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC----TTSEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEECCTTTSC----CCSC
T ss_pred cCCceeeeeccCCceeeehhhhc----ccceEEEEecchHHHHHHHHHHHHcC----Ccceeeeccchhhhc----cccc
Confidence 56799999999999999999874 46999999999999999999888877 578999987665542 2347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
||+|++-. ......+++-+..++++||.+++.-
T Consensus 133 fD~V~sRA-------------~~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 133 FDGVISRA-------------FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp EEEEECSC-------------SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred cceehhhh-------------hcCHHHHHHHHHHhcCCCcEEEEEC
Confidence 99998763 1223578888899999999987654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.71 E-value=4.5e-09 Score=86.13 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=67.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
...+|||||||+|..+..++++. |+.+++++|+.+. ++.++ ...+++++.++.. +..+. .+
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~----P~l~~~v~Dlp~v-i~~~~----------~~~r~~~~~~d~~---~~~P~-ad 141 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKY----PTIKGINFDLPHV-IEDAP----------SYPGVEHVGGDMF---VSIPK-AD 141 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHC----TTSEEEEEECTTT-TTTCC----------CCTTEEEEECCTT---TCCCC-CS
T ss_pred CCcEEEEecCCCcHHHHHHHHHC----CCCeEEEcccHHh-hhhcc----------cCCceEEeccccc---ccCCC-cc
Confidence 35689999999999999999995 5699999998653 32221 2467888876653 22222 22
Q ss_pred EEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+ .+.. .++| ..++...+|+++++.|+|||+++|.+.
T Consensus 142 ~--~~l~---------~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 142 A--VFMK---------WICHDWSDEHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp C--EECS---------SSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred e--EEEE---------EEeecCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 2 2222 1222 235668899999999999999998765
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.68 E-value=1.1e-07 Score=82.39 Aligned_cols=108 Identities=13% Similarity=0.082 Sum_probs=81.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccc-----------cccceEEEecChh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA-----------EKGLVKLFNMCHS 162 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~-----------~~~~v~~~~~~~~ 162 (267)
.+.+|||..||+|..++..|...+. .+|+..|+|+.+++.+++|++.|+... ...++.+.+.|..
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~----~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~ 120 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPA----EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN 120 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSC----SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCC----CEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh
Confidence 5679999999999999998887653 689999999999999999999886311 0123455555544
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+.... ...||+|..|+ ++.. ..+++.+.+.++.||.|.++.-
T Consensus 121 ~~~~~~--~~~fDvIDiDP----fGs~---------~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 121 RLMAER--HRYFHFIDLDP----FGSP---------MEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HHHHHS--TTCEEEEEECC----SSCC---------HHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhHhh--cCcCCcccCCC----CCCc---------HHHHHHHHHHhccCCEEEEEec
Confidence 333222 23699999994 3222 3799999999999999999864
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.65 E-value=9.5e-08 Score=84.34 Aligned_cols=125 Identities=21% Similarity=0.150 Sum_probs=84.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCC---------cEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSA---------GCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~---------~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
..++.+|+|..||+|.+...+.+++...... ..++|+|+++.+...|+.++..++.. ..+..+...+.
T Consensus 160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~--~~~~~i~~~d~- 236 (425)
T d2okca1 160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG--TDRSPIVCEDS- 236 (425)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC--SSCCSEEECCT-
T ss_pred CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc--cccceeecCch-
Confidence 3467899999999999999988876431111 24899999999999999998776521 12333444332
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCcee--------echhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVI--------TTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~--------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
... .....||+|++|+||-........ ........++..+.+.|++||+++++.+.+
T Consensus 237 --l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~ 301 (425)
T d2okca1 237 --LEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN 301 (425)
T ss_dssp --TTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred --hhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechH
Confidence 111 223479999999988221111111 011233568999999999999999988754
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.62 E-value=4.2e-08 Score=79.43 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=65.9
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc--CCCCC
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI--VPKST 172 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~--~~~~~ 172 (267)
..+|||+|++.|..++.++..+....+.++|+|+|+++.....+.. ...++++++++..+.... .. +.
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~---------~~~~I~~i~gDs~~~~~~~~l~-~~ 150 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---------DMENITLHQGDCSDLTTFEHLR-EM 150 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---------GCTTEEEEECCSSCSGGGGGGS-SS
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc---------cccceeeeecccccHHHHHHHH-hc
Confidence 3599999999999988887654211125899999998754332211 257899998876543322 22 22
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+|+|+.+- - |.......-+ +...+|+|||++++-+.
T Consensus 151 ~~dlIfID~---------~-H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 151 AHPLIFIDN---------A-HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp CSSEEEEES---------S-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred CCCEEEEcC---------C-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 466777772 1 2222222223 35689999999988664
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=4.9e-07 Score=74.92 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=63.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.+++.|||||+|+|.+|..|++. +.+|++||+++.+++..++.+.... ...+++++.+|.... ..+
T Consensus 18 ~~~~~d~VlEIGPG~G~LT~~Ll~~------~~~v~aiE~D~~l~~~L~~~~~~~~---~~~~~~~i~~D~l~~---~~~ 85 (278)
T d1zq9a1 18 ALRPTDVVLEVGPGTGNMTVKLLEK------AKKVVACELDPRLVAELHKRVQGTP---VASKLQVLVGDVLKT---DLP 85 (278)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEESCTTTS---CCC
T ss_pred CCCCCCEEEEECCCchHHHHHHHhc------CCcEEEEEEccchhHHHHHHHhhhc---cccchhhhHHHHhhh---hhh
Confidence 4678899999999999999999988 4799999999999999999887654 357899998765332 211
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
..+.+++|++|
T Consensus 86 --~~~~vV~NLPY 96 (278)
T d1zq9a1 86 --FFDTCVANLPY 96 (278)
T ss_dssp --CCSEEEEECCG
T ss_pred --hhhhhhcchHH
Confidence 24578999877
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=3.2e-08 Score=81.18 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=61.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh--hhcC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM--EEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l--~~~~ 168 (267)
.+.+++.|||||||+|.+|..|++. +.+|++||+++.+++..+++... ..+++++.+|..++ .+..
T Consensus 18 ~~~~~d~vlEIGpG~G~LT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~~------~~~~~ii~~D~l~~~~~~~~ 85 (252)
T d1qyra_ 18 NPQKGQAMVEIGPGLAALTEPVGER------LDQLTVIELDRDLAARLQTHPFL------GPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHHHHHTT------CSCEEEECCCHHHHHHHHTCTTT------GGGEEEECSCGGGCCHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHcc------CCceEEEEeccchhHHHHHHhhh------ccchhHHhhhhhhhcccccc
Confidence 4678899999999999999999987 46899999999999999885543 36899998877643 2221
Q ss_pred CCCCcEEEEEEeCCC
Q 041272 169 PKSTAVRLVAFNLGY 183 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~ 183 (267)
.....-..+++|++|
T Consensus 86 ~~~~~~~~vvgNlPY 100 (252)
T d1qyra_ 86 EKMGQPLRVFGNLPY 100 (252)
T ss_dssp HHHTSCEEEEEECCT
T ss_pred cccCCCeEEEecchH
Confidence 111123578899877
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=6.2e-07 Score=81.04 Aligned_cols=129 Identities=13% Similarity=0.048 Sum_probs=81.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCC--------------CcEEEEEeCChHHHHHHHHHHhhcccccc-ccceEE
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESS--------------AGCVYGLDIQSEALKSTSSLLDKTTSKAE-KGLVKL 156 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p--------------~~~v~giD~s~~~i~~a~~~~~~~~~~~~-~~~v~~ 156 (267)
..++.+|+|..||+|.+...+.+++..... ...++|+|+++.+...|+-++--++.... .....+
T Consensus 162 ~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~ 241 (524)
T d2ar0a1 162 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 241 (524)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchh
Confidence 456789999999999999888776532110 12589999999999999998876552100 011112
Q ss_pred EecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCcee-----echhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 157 FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVI-----TTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..++... ........||+|++|+||-........ ........++..+.+.|||||++.++.+.+
T Consensus 242 ~~~~~l~--~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~ 310 (524)
T d2ar0a1 242 RLGNTLG--SDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 310 (524)
T ss_dssp EESCTTS--HHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred hhhhhhh--hcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence 2211111 101112369999999988322221111 112223468999999999999999988754
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.46 E-value=2.1e-07 Score=75.09 Aligned_cols=141 Identities=18% Similarity=0.119 Sum_probs=83.0
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
+.....+..++++++|+|+|||.|.++..++.+.+ ...|.|+|+--..-+. -......+ ..-+++... .
T Consensus 55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~----v~~V~g~~iG~d~~e~-P~~~~~~~----~ni~~~~~~--~ 123 (257)
T d2p41a1 55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKN----VREVKGLTKGGPGHEE-PIPMSTYG----WNLVRLQSG--V 123 (257)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTT----EEEEEEECCCSTTSCC-CCCCCSTT----GGGEEEECS--C
T ss_pred HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcC----CCceeEEEecCccccC-Cccccccc----cccccchhh--h
Confidence 33333344678899999999999999999998743 2578888773221000 00001111 122333321 1
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
++... +...+|.+++|++.- .++ .........++++-+.+.|+|||-+++-++ .+..++..+.++.+...+.
T Consensus 124 dv~~l--~~~~~D~vlcDm~es-s~~--~~vd~~Rtl~vLela~~wLk~gg~FvvKVl--~py~~~v~e~le~lq~~fg 195 (257)
T d2p41a1 124 DVFFI--PPERCDTLLCDIGES-SPN--PTVEAGRTLRVLNLVENWLSNNTQFCVKVL--NPYMSSVIEKMEALQRKHG 195 (257)
T ss_dssp CTTTS--CCCCCSEEEECCCCC-CSS--HHHHHHHHHHHHHHHHHHCCTTCEEEEEES--CCCSHHHHHHHHHHHHHHC
T ss_pred hHHhc--CCCcCCEEEeeCCCC-CCC--chhhhhhHHHHHHHHHHHcccCCEEEEEEC--CCCChHHHHHHHHHHHHhC
Confidence 22222 234799999997531 111 112223345778888899999999988776 4455666666777666543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.28 E-value=2.4e-06 Score=67.02 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=77.3
Q ss_pred HHHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 86 GVWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 86 ~l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
.+....+++|++||-+|||. |..+..+|+..+. .+|+++|.+++.++.|++.- --..+.....++
T Consensus 17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga----~~Vi~~d~~~~rl~~a~~~G----------a~~~~~~~~~~~ 82 (195)
T d1kola2 17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGA----AVVIVGDLNPARLAHAKAQG----------FEIADLSLDTPL 82 (195)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEEESCHHHHHHHHHTT----------CEEEETTSSSCH
T ss_pred HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcc----cceeeecccchhhHhhhhcc----------ccEEEeCCCcCH
Confidence 34445789999999999999 7788888887653 79999999999999988731 112222112222
Q ss_pred ----hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 ----EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ----~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+.. ....+|+++-..+.-.................++.+.+.++|||+++++-.
T Consensus 83 ~~~i~~~t-~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 83 HEQIAALL-GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp HHHHHHHH-SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred HHHHHHHh-CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 2221 233689988775431111000011112234789999999999999988754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=98.22 E-value=3.2e-06 Score=65.06 Aligned_cols=106 Identities=20% Similarity=0.287 Sum_probs=74.5
Q ss_pred HHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh--
Q 041272 87 VWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR-- 163 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~-- 163 (267)
+....+++|++||=+|||. |..+..+++..+. .+|+++|.+++.++.|++. | -.+++.....+
T Consensus 20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga----~~Vi~~d~~~~r~~~a~~l----G------a~~~i~~~~~~~~ 85 (174)
T d1jqba2 20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRGA----GRIIGVGSRPICVEAAKFY----G------ATDILNYKNGHIE 85 (174)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTC----SCEEEECCCHHHHHHHHHH----T------CSEEECGGGSCHH
T ss_pred HHHhCCCCCCEEEEEcCCcchhhhhhhhhcccc----cccccccchhhhHHHHHhh----C------ccccccccchhHH
Confidence 4445688999999999998 8999999998753 5899999999999888762 1 11222221122
Q ss_pred --hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 164 --MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 164 --l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+.+.. ....+|+++-..+. ...++++.+.++|+|++++...++
T Consensus 86 ~~v~~~t-~g~G~D~vid~~g~---------------~~~~~~a~~~~~~~G~iv~~G~~~ 130 (174)
T d1jqba2 86 DQVMKLT-NGKGVDRVIMAGGG---------------SETLSQAVKMVKPGGIISNINYHG 130 (174)
T ss_dssp HHHHHHT-TTSCEEEEEECSSC---------------TTHHHHHHHHEEEEEEEEECCCCC
T ss_pred HHHHHHh-hccCcceEEEccCC---------------HHHHHHHHHHHhcCCEEEEEeecC
Confidence 22222 23359998887532 257888999999999998865543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=98.20 E-value=1.3e-05 Score=61.00 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=73.8
Q ss_pred hhHHHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-C-
Q 041272 84 ANGVWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-C- 160 (267)
Q Consensus 84 ~~~l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~- 160 (267)
.+.+....+++|++||-+|||+ |..+..+++.. +++|+++|.+++.++.|++.-. ...+... .
T Consensus 16 ~~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-----Ga~vi~v~~~~~r~~~a~~~ga---------~~~~~~~~~~ 81 (170)
T d1e3ja2 16 VHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-----GAFVVCTARSPRRLEVAKNCGA---------DVTLVVDPAK 81 (170)
T ss_dssp HHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHTTC---------SEEEECCTTT
T ss_pred HHHHHHhCCCCCCEEEEEcccccchhhHhhHhhh-----cccccccchHHHHHHHHHHcCC---------cEEEeccccc
Confidence 3444555788999999999997 88888889886 3699999999999999987321 1222211 1
Q ss_pred --hhh----hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 161 --HSR----MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 161 --~~~----l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..+ +.+.. ...+|+++-..+. ...++.+.+.|+|||++++...+.
T Consensus 82 ~~~~~~~~~~~~~~--g~g~D~vid~~g~---------------~~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 82 EEESSIIERIRSAI--GDLPNVTIDCSGN---------------EKCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp SCHHHHHHHHHHHS--SSCCSEEEECSCC---------------HHHHHHHHHHSCTTCEEEECSCCS
T ss_pred cccchhhhhhhccc--ccCCceeeecCCC---------------hHHHHHHHHHHhcCCceEEEecCC
Confidence 111 11111 2247777766432 467899999999999998766543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=9.1e-06 Score=62.06 Aligned_cols=112 Identities=17% Similarity=0.166 Sum_probs=74.8
Q ss_pred hHHHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe-cChh
Q 041272 85 NGVWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN-MCHS 162 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~~~~ 162 (267)
+.+.+..++++++||=+|||+ |..+..+++..+. .+|+++|.+++.++.|++.-. ..+.... .+..
T Consensus 17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~----~~Vi~~d~~~~rl~~a~~~Ga--------~~~~~~~~~~~~ 84 (171)
T d1pl8a2 17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA----AQVVVTDLSATRLSKAKEIGA--------DLVLQISKESPQ 84 (171)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEEESCHHHHHHHHHTTC--------SEEEECSSCCHH
T ss_pred HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCC----ceEEeccCCHHHHHHHHHhCC--------cccccccccccc
Confidence 444555788999999999998 7888888888753 589999999999998876311 1111111 1111
Q ss_pred hhhhcC--CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 163 RMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 163 ~l~~~~--~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
+..+.. .....+|+++-..+. ...++.+.+.+++||++++...+..
T Consensus 85 ~~~~~~~~~~g~g~Dvvid~~G~---------------~~~~~~a~~~~~~gG~iv~~G~~~~ 132 (171)
T d1pl8a2 85 EIARKVEGQLGCKPEVTIECTGA---------------EASIQAGIYATRSGGTLVLVGLGSE 132 (171)
T ss_dssp HHHHHHHHHHTSCCSEEEECSCC---------------HHHHHHHHHHSCTTCEEEECSCCCS
T ss_pred cccccccccCCCCceEEEeccCC---------------chhHHHHHHHhcCCCEEEEEecCCC
Confidence 111110 012357887776432 4688999999999999988766443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.09 E-value=9.5e-06 Score=62.20 Aligned_cols=100 Identities=19% Similarity=0.166 Sum_probs=71.7
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh--
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-- 166 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-- 166 (267)
..+++|++||=+|||. |..+..+++..+. ..|+.+|.+++-++.|++. + -.+++.....++.+
T Consensus 24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~----~~v~~~~~~~~k~~~a~~~----G------a~~~i~~~~~~~~~~i 89 (174)
T d1f8fa2 24 LKVTPASSFVTWGAGAVGLSALLAAKVCGA----SIIIAVDIVESRLELAKQL----G------ATHVINSKTQDPVAAI 89 (174)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHTC----SEEEEEESCHHHHHHHHHH----T------CSEEEETTTSCHHHHH
T ss_pred hCCCCCCEEEEeCCCHHHhhhhhccccccc----ceeeeeccHHHHHHHHHHc----C------CeEEEeCCCcCHHHHH
Confidence 3578999999999988 7778888888764 6888999999999888763 1 12233322223322
Q ss_pred --cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 167 --IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 167 --~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.. +..+|+++-..+. ...++.+.++++|+|++++...
T Consensus 90 ~~~t--~gg~D~vid~~G~---------------~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 90 KEIT--DGGVNFALESTGS---------------PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp HHHT--TSCEEEEEECSCC---------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHc--CCCCcEEEEcCCc---------------HHHHHHHHhcccCceEEEEEee
Confidence 22 2369999877443 4788999999999999987643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=98.06 E-value=4.3e-06 Score=64.60 Aligned_cols=100 Identities=18% Similarity=0.170 Sum_probs=69.8
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec---Chhh---
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM---CHSR--- 163 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~---~~~~--- 163 (267)
.+++|++||-+|+|. |..+..+|+..|. .+|+++|.+++.++.|++. | .. .++.. +..+
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga----~~Vi~~~~~~~~~~~a~~l----G-----a~-~vi~~~~~~~~~~~~ 90 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLGA----ENVIVIAGSPNRLKLAEEI----G-----AD-LTLNRRETSVEERRK 90 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTTB----SEEEEEESCHHHHHHHHHT----T-----CS-EEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEECCCccchhheeccccccc----ccccccccccccccccccc----c-----ce-EEEeccccchHHHHH
Confidence 467899999999997 8899999998753 4899999999999988763 2 11 11111 1111
Q ss_pred -hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 -MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 -l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.+.. ....+|+++-..+. ...++.+.+.|+|||++++...
T Consensus 91 ~i~~~~-~~~g~Dvvid~vG~---------------~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 91 AIMDIT-HGRGADFILEATGD---------------SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp HHHHHT-TTSCEEEEEECSSC---------------TTHHHHHHHHEEEEEEEEECCC
T ss_pred HHHHhh-CCCCceEEeecCCc---------------hhHHHHHHHHhcCCCEEEEEee
Confidence 12222 23358998876432 2578889999999999977654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.01 E-value=7.4e-06 Score=62.44 Aligned_cols=105 Identities=12% Similarity=0.105 Sum_probs=69.1
Q ss_pred HHHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-Chhh
Q 041272 86 GVWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHSR 163 (267)
Q Consensus 86 ~l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~ 163 (267)
.+....+++|++||-+|+|. |..+..+++..| ++|+++|.+++.++.|++. | .. .++.. +..+
T Consensus 19 al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G-----~~vi~~~~~~~k~~~a~~l----G-----a~-~~i~~~~~~~ 83 (168)
T d1piwa2 19 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMG-----AETYVISRSSRKREDAMKM----G-----AD-HYIATLEEGD 83 (168)
T ss_dssp HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHT-----CEEEEEESSSTTHHHHHHH----T-----CS-EEEEGGGTSC
T ss_pred HHHHhCcCCCCEEEEECCCCcchhHHHHhhhcc-----ccccccccchhHHHHhhcc----C-----Cc-EEeeccchHH
Confidence 33445788999999999996 888899998874 6999999999999988763 2 11 12221 1122
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.+... ..+|+++...+.... ..+..+.+.|+|||++++...
T Consensus 84 ~~~~~~--~~~d~vi~~~~~~~~-------------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 84 WGEKYF--DTFDLIVVCASSLTD-------------IDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp HHHHSC--SCEEEEEECCSCSTT-------------CCTTTGGGGEEEEEEEEECCC
T ss_pred HHHhhh--cccceEEEEecCCcc-------------chHHHHHHHhhccceEEEecc
Confidence 232222 358888765322110 124567889999999987643
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.94 E-value=2.5e-05 Score=59.62 Aligned_cols=100 Identities=20% Similarity=0.260 Sum_probs=71.1
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh---hh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM---EE 166 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l---~~ 166 (267)
.+++|++||-+|+|. |..+..+++..+. ..|+++|.+++.++.+++.-. ..++.....+. .+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~----~~vv~~~~~~~k~~~~~~~ga----------~~~i~~~~~~~~~~~~ 94 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTP----ATVIALDVKEEKLKLAERLGA----------DHVVDARRDPVKQVME 94 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCC----CEEEEEESSHHHHHHHHHTTC----------SEEEETTSCHHHHHHH
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcC----cccccccchhHHHHHHhhccc----------ceeecCcccHHHHHHH
Confidence 468999999999998 7777888887763 689999999998888886321 12232222222 22
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.. ....+|+++...+. ...++.+.+.|++||++++.-.
T Consensus 95 ~~-~~~g~d~vid~~g~---------------~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 95 LT-RGRGVNVAMDFVGS---------------QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp HT-TTCCEEEEEESSCC---------------HHHHHHGGGGEEEEEEEEECCC
T ss_pred hh-CCCCceEEEEecCc---------------chHHHHHHHHHhCCCEEEEEeC
Confidence 22 22358998887543 4678999999999999987654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.94 E-value=2.1e-05 Score=59.55 Aligned_cols=104 Identities=19% Similarity=0.128 Sum_probs=67.5
Q ss_pred HHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh
Q 041272 87 VWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME 165 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~ 165 (267)
+.+..+++|++||=+|+|. |..+..+++..+ .+|+++|.+++.++.+++. + --.++.....+..
T Consensus 20 l~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G-----~~Vi~~~~~~~~~~~a~~~----G------a~~~i~~~~~~~~ 84 (166)
T d1llua2 20 LKQTNARPGQWVAISGIGGLGHVAVQYARAMG-----LHVAAIDIDDAKLELARKL----G------ASLTVNARQEDPV 84 (166)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-----CEEEEEESCHHHHHHHHHT----T------CSEEEETTTSCHH
T ss_pred HHHhCCCCCCEEEEeeccccHHHHHHHHHHcC-----CccceecchhhHHHhhhcc----C------ccccccccchhHH
Confidence 3344688999999999998 888888998863 6999999999999888763 2 1122222222221
Q ss_pred h-cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 E-IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~-~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+ .......++.++.+.+. ...++.+.+.|+|||++++.-.
T Consensus 85 ~~~~~~~~g~~~~i~~~~~---------------~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 85 EAIQRDIGGAHGVLVTAVS---------------NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp HHHHHHHSSEEEEEECCSC---------------HHHHHHHHTTEEEEEEEEECCC
T ss_pred HHHHHhhcCCccccccccc---------------chHHHHHHHHhcCCcEEEEEEe
Confidence 1 10001124444444211 3678889999999999987644
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.93 E-value=9.8e-06 Score=65.64 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=61.1
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-----ccccceEEEecChhhhhhcCCC
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-----AEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+|||+.||.|..+..+|.. +++|+++|.++.+....+..+++...+ ....|++++++|..++....
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~------G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-- 161 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-- 161 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC--
T ss_pred CEEEECCCcccHHHHHHHhC------CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc--
Confidence 38999999999999999987 579999999998877777666543210 12458999998876655433
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
...||+|+.|+.|
T Consensus 162 ~~~~DvIYlDPMF 174 (250)
T d2oyra1 162 TPRPQVVYLDPMF 174 (250)
T ss_dssp SSCCSEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 2368999999766
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.87 E-value=5.6e-05 Score=57.85 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=72.7
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-----Chhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-----CHSR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-----~~~~ 163 (267)
..+++|++||=+|||. |..+..+++..+. .+|+.+|.+++.++.|++.-. ..++.. ....
T Consensus 24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga----~~Vi~~d~~~~r~~~a~~~Ga----------~~~i~~~~~~~~~~~ 89 (174)
T d1e3ia2 24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGA----SRIIAIDINGEKFPKAKALGA----------TDCLNPRELDKPVQD 89 (174)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEECSCGGGHHHHHHTTC----------SEEECGGGCSSCHHH
T ss_pred hCCCCCCEEEEECCChHHHHHHHHHHHhCC----ceeeeeccchHHHHHHHHhCC----------CcccCCccchhhhhh
Confidence 4688999999999999 9999999999864 689999999999988887321 112211 1111
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEec
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVYV 221 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~ 221 (267)
...... ...+|+++-..+. ...+.++.+.+++| |.+++.-.+
T Consensus 90 ~~~~~~-~~G~d~vie~~G~---------------~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 90 VITELT-AGGVDYSLDCAGT---------------AQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp HHHHHH-TSCBSEEEESSCC---------------HHHHHHHHHTBCTTTCEEEECCCS
T ss_pred hHhhhh-cCCCcEEEEeccc---------------chHHHHHHHHhhcCCeEEEecCCC
Confidence 111111 2357888877443 57899999999997 999886553
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.78 E-value=9.4e-05 Score=55.99 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=72.3
Q ss_pred hHHHhhhcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 85 NGVWKHVVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
+.+.+..++++++||=+|+ |. |..+..+++..+. .+|+++|.+++-++.+++. | .. ..+.....
T Consensus 18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~----~~V~~~~~~~~~~~~~~~~----G----a~--~~i~~~~~ 83 (170)
T d1jvba2 18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSG----ATIIGVDVREEAVEAAKRA----G----AD--YVINASMQ 83 (170)
T ss_dssp HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTC----CEEEEEESSHHHHHHHHHH----T----CS--EEEETTTS
T ss_pred HHHHHhCCCCCCEEEEEeccccceeeeeeccccccc----ccccccccchhhHHHHHHc----C----Cc--eeeccCCc
Confidence 3444456889999999997 43 6777778887653 6999999999988888763 2 11 12222222
Q ss_pred hhhhc---CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 163 RMEEI---VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 163 ~l~~~---~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+..+. ......+|+++-..+- ...++.+.+.++|||++++....+
T Consensus 84 ~~~~~~~~~~~~~~~d~vid~~g~---------------~~~~~~a~~~l~~~G~iv~~G~~~ 131 (170)
T d1jvba2 84 DPLAEIRRITESKGVDAVIDLNNS---------------EKTLSVYPKALAKQGKYVMVGLFG 131 (170)
T ss_dssp CHHHHHHHHTTTSCEEEEEESCCC---------------HHHHTTGGGGEEEEEEEEECCSSC
T ss_pred CHHHHHHHHhhcccchhhhccccc---------------chHHHhhhhhcccCCEEEEecccc
Confidence 22111 1123368988876432 467888899999999998775543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=5.5e-05 Score=57.35 Aligned_cols=103 Identities=11% Similarity=0.103 Sum_probs=70.2
Q ss_pred HHHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 86 GVWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 86 ~l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
.+....+++|++||=+|+|. |.++..+|+..| ++++++|.+++-.+.+++. + .-.++.....+.
T Consensus 22 al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~G-----a~~i~~~~~~~~~~~a~~l----G------ad~~i~~~~~~~ 86 (168)
T d1uufa2 22 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMG-----AHVVAFTTSEAKREAAKAL----G------ADEVVNSRNADE 86 (168)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT-----CEEEEEESSGGGHHHHHHH----T------CSEEEETTCHHH
T ss_pred HHHHhCCCCCCEEEEeccchHHHHHHHHhhccc-----ccchhhccchhHHHHHhcc----C------CcEEEECchhhH
Confidence 33445689999999999988 888899998864 6888999999988877652 2 112232222222
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
... ....+|.++...+. ...++...+.|++||++++...
T Consensus 87 ~~~--~~~~~D~vid~~g~---------------~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 87 MAA--HLKSFDFILNTVAA---------------PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp HHT--TTTCEEEEEECCSS---------------CCCHHHHHTTEEEEEEEEECCC
T ss_pred HHH--hcCCCceeeeeeec---------------chhHHHHHHHHhcCCEEEEecc
Confidence 221 12368988877432 1356788899999999987644
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.68 E-value=0.00011 Score=55.36 Aligned_cols=102 Identities=22% Similarity=0.160 Sum_probs=67.8
Q ss_pred HHHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh-
Q 041272 86 GVWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR- 163 (267)
Q Consensus 86 ~l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~- 163 (267)
.+....++++++||=.|+|+ |..+..+++.. +.+|+++|.+++.++.+++. | --.++.....+
T Consensus 19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~-----g~~v~~~~~~~~r~~~~k~~----G------a~~~~~~~~~~~ 83 (168)
T d1rjwa2 19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAM-----GLNVVAVDIGDEKLELAKEL----G------ADLVVNPLKEDA 83 (168)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHT-----TCEEEEECSCHHHHHHHHHT----T------CSEEECTTTSCH
T ss_pred HHHHhCCCCCCEEEEeecccchhhhhHHHhcC-----CCeEeccCCCHHHhhhhhhc----C------cceecccccchh
Confidence 34445688999999999998 77778888875 46899999999999888763 2 11112111111
Q ss_pred ---hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 ---MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 ---l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.... ...|.++.+.+. ...+..+.+.|+|||.+++...
T Consensus 84 ~~~~~~~~---~~~~~~v~~~~~---------------~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 84 AKFMKEKV---GGVHAAVVTAVS---------------KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp HHHHHHHH---SSEEEEEESSCC---------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred hhhccccc---CCCceEEeecCC---------------HHHHHHHHHHhccCCceEeccc
Confidence 22222 134555555321 4678999999999999987654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.61 E-value=0.00024 Score=54.07 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=68.3
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-----hh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-----SR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-----~~ 163 (267)
..+++|++||=+|||. |..+..+++..+. .+|+++|.+++.++.|++.= -..++.... ..
T Consensus 23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~----~~Vi~~d~~~~kl~~a~~lG----------a~~~i~~~~~d~~~~~ 88 (174)
T d1p0fa2 23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGA----SRIIGVGTHKDKFPKAIELG----------ATECLNPKDYDKPIYE 88 (174)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTC----SEEEEECSCGGGHHHHHHTT----------CSEEECGGGCSSCHHH
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcCC----ceeeccCChHHHHHHHHHcC----------CcEEEcCCCchhHHHH
Confidence 4689999999999998 7777888888764 79999999999999998732 112222111 11
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccC-CcEEEEEEecC
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP-GGLISMVVYVG 222 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~ 222 (267)
...... +..+|.++-..+. ...+.+....+++ +|.+++.....
T Consensus 89 ~~~~~~-~~G~d~vid~~g~---------------~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 89 VICEKT-NGGVDYAVECAGR---------------IETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp HHHHHT-TSCBSEEEECSCC---------------HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred HHHHhc-CCCCcEEEEcCCC---------------chHHHHHHHHHHHhcCceEEEEEec
Confidence 111111 2257777776432 4677777777765 58988766543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=0.00012 Score=61.44 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=48.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
.+..|||||.|.|.+|..|.+..++ .+|++||+++..++.-++.... .+++++.+|...+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~----~~v~~iE~D~~~~~~L~~~~~~-------~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCP----RQYSLLEKRSSLYKFLNAKFEG-------SPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCC----SEEEEECCCHHHHHHHHHHTTT-------SSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCC----CEEEEEECCHHHHHHHHHhccC-------CCcEEEeCchhhc
Confidence 4678999999999999999987532 5899999999999988876542 5688888776544
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00013 Score=55.45 Aligned_cols=97 Identities=16% Similarity=0.207 Sum_probs=66.2
Q ss_pred hcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-
Q 041272 91 VVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI- 167 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~- 167 (267)
.+++|++||-.|+ | .|..+..+|+..| .+|++++.+++..+.+++ .+ .. +++.-...++.+.
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G-----~~vi~~~~~~~~~~~~~~----~G----a~--~vi~~~~~~~~~~i 89 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAYG-----LKILGTAGTEEGQKIVLQ----NG----AH--EVFNHREVNYIDKI 89 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTT-----CEEEEEESSHHHHHHHHH----TT----CS--EEEETTSTTHHHHH
T ss_pred CCCCCCEEEEEeccccccccccccccccC-----cccccccccccccccccc----cC----cc--cccccccccHHHHh
Confidence 5789999999996 4 3788889998874 689999999888777765 23 11 2222222222221
Q ss_pred --CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
......+|+++...+ ...++++.+.|+|+|+++..
T Consensus 90 ~~~t~~~g~d~v~d~~g----------------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 90 KKYVGEKGIDIIIEMLA----------------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHHHCTTCEEEEEESCH----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred hhhhccCCceEEeeccc----------------HHHHHHHHhccCCCCEEEEE
Confidence 112336898887631 25788899999999999765
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.54 E-value=0.0001 Score=59.18 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=49.4
Q ss_pred hHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHh
Q 041272 79 LITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143 (267)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~ 143 (267)
....+...+++..-.+|+.|||.-||+|..+....+. +.+.+|+|++++.++.|+++++
T Consensus 197 kP~~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~------~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 197 KPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL------GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CCHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHc
Confidence 3455666777666689999999999999988776665 5799999999999999999875
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.48 E-value=0.00012 Score=60.64 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=51.7
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT 145 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~ 145 (267)
.....+...++...-.+|+.|||.-||+|..+....+. +.+.+|+|++++.++.|++++...
T Consensus 234 ~kP~~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~l------gR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 234 RFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERE------SRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CCCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred cCchHHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHc------CCcEEEEeCCHHHHHHHHHHHHhc
Confidence 34556677777777789999999999999988877765 579999999999999999988663
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.38 E-value=0.00038 Score=53.03 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=66.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-----hh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-----SR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-----~~ 163 (267)
..+++|++||=+|||. |..+..+++..+. .+|+++|.+++.++.|++.-.. .++.... ..
T Consensus 25 ~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~----~~Vi~vd~~~~kl~~Ak~~GA~----------~~in~~~~~~~~~~ 90 (176)
T d1d1ta2 25 GKVKPGSTCVVFGLGGVGLSVIMGCKSAGA----SRIIGIDLNKDKFEKAMAVGAT----------ECISPKDSTKPISE 90 (176)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEECSCGGGHHHHHHHTCS----------EEECGGGCSSCHHH
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcCC----ceEEEecCcHHHHHHHHhcCCc----------EEECccccchHHHH
Confidence 3588999999999998 7777888888753 7999999999999999885322 1221111 11
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcc-cCCcEEEEEEec
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL-IPGGLISMVVYV 221 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~ 221 (267)
+.+.. ....+|+++...+. ...+++....+ +++|.++++..+
T Consensus 91 ~~~~~-~g~G~d~vi~~~g~---------------~~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 91 VLSEM-TGNNVGYTFEVIGH---------------LETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp HHHHH-HTSCCCEEEECSCC---------------HHHHHHHHTTSCTTTCEEEECSCC
T ss_pred HHHHh-ccccceEEEEeCCc---------------hHHHHHHHHHhhcCCeEEEEEEcc
Confidence 11111 12357777776332 34556655555 455899876554
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.35 E-value=0.00029 Score=57.17 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=52.3
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT 145 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~ 145 (267)
.....+...+++..-.+|+.|||.-||+|..+....+. +.+.+|+|++++.++.|++++...
T Consensus 191 ~kP~~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~l------gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 191 QKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE------GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CCCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH------TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred ccchhHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHh------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 45556777777766789999999999999988777765 579999999999999999999763
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.30 E-value=0.00096 Score=50.65 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=65.5
Q ss_pred hcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-
Q 041272 91 VVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI- 167 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~- 167 (267)
.+++|++||=.|. |. |..+..+|+..+ .+|++++.+++-.+.+++ .+ .. ..+.....++.+.
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g-----~~vi~~~~~~~~~~~l~~----~G----a~--~vi~~~~~~~~~~v 86 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMIG-----ARIYTTAGSDAKREMLSR----LG----VE--YVGDSRSVDFADEI 86 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHT-----CEEEEEESSHHHHHHHHT----TC----CS--EEEETTCSTHHHHH
T ss_pred CCCCCCEEEEECCCCCcccccchhhcccc-----ccceeeeccccccccccc----cc----cc--ccccCCccCHHHHH
Confidence 4789999999773 44 888899998874 689999888887777765 23 11 2222222233221
Q ss_pred --CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
......+|+++...+- +.++.+.+.|+++|+++..
T Consensus 87 ~~~t~~~g~d~v~d~~g~----------------~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 87 LELTDGYGVDVVLNSLAG----------------EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HHHTTTCCEEEEEECCCT----------------HHHHHHHHTEEEEEEEEEC
T ss_pred HHHhCCCCEEEEEecccc----------------hHHHHHHHHhcCCCEEEEE
Confidence 1123469999987431 5778889999999999764
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.0009 Score=50.65 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=67.4
Q ss_pred hcCCCCEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-
Q 041272 91 VVRKGDTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI- 167 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~- 167 (267)
.+++|++||=.|+|+ |..+..+|+.. +++|++++.+++..+.+++. | .. +++.....++.+.
T Consensus 25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~-----Ga~Vi~~~~s~~k~~~~~~l----G----a~--~vi~~~~~d~~~~v 89 (179)
T d1qora2 25 EIKPDEQFLFHAAAGGVGLIACQWAKAL-----GAKLIGTVGTAQKAQSALKA----G----AW--QVINYREEDLVERL 89 (179)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHH----T----CS--EEEETTTSCHHHHH
T ss_pred CCCCCCEEEEEccccccchHHHHHHHHh-----CCeEeecccchHHHHHHHhc----C----Ce--EEEECCCCCHHHHH
Confidence 578999999997665 78889999987 47999999999998888753 2 11 2232222333221
Q ss_pred --CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...+..+|+++...+ .+.+..+.+.++++|++++..
T Consensus 90 ~~~t~g~g~d~v~d~~g----------------~~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 90 KEITGGKKVRVVYDSVG----------------RDTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp HHHTTTCCEEEEEECSC----------------GGGHHHHHHTEEEEEEEEECC
T ss_pred HHHhCCCCeEEEEeCcc----------------HHHHHHHHHHHhcCCeeeecc
Confidence 123446888776632 146788899999999986644
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.26 E-value=0.001 Score=50.11 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=67.9
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----hhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----HSR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~~~ 163 (267)
..+++|++||=.|||. |.++..+++..+. ..|+++|.+++..+.+++.=.. .++... ...
T Consensus 24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~----~~vi~~~~~~~k~~~ak~lGa~----------~~i~~~~~~~~~~~ 89 (176)
T d2fzwa2 24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGA----SRIIGVDINKDKFARAKEFGAT----------ECINPQDFSKPIQE 89 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTC----SEEEEECSCGGGHHHHHHHTCS----------EEECGGGCSSCHHH
T ss_pred hCCCCCCEEEEecchhHHHHHHHHHHHHhc----CceEEEcccHHHHHHHHHhCCc----------EEEeCCchhhHHHH
Confidence 4689999999999986 6777888888764 7899999999999888863211 122111 111
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...... ...+|+++-..+. ...++.+..++++||.+++..
T Consensus 90 ~~~~~~-~~g~D~vid~~G~---------------~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 90 VLIEMT-DGGVDYSFECIGN---------------VKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp HHHHHT-TSCBSEEEECSCC---------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHc-CCCCcEeeecCCC---------------HHHHHHHHHhhcCCceeEEEE
Confidence 111111 2358888877432 478888999999998876554
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=97.19 E-value=0.00025 Score=57.12 Aligned_cols=120 Identities=15% Similarity=0.088 Sum_probs=74.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCC------------------------------------CcEEEEEeCChHHHHH
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESS------------------------------------AGCVYGLDIQSEALKS 137 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p------------------------------------~~~v~giD~s~~~i~~ 137 (267)
.+..++|--||+|++.+++|......-| ..+++|.|+++.+++.
T Consensus 50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~ 129 (249)
T d1o9ga_ 50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 129 (249)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence 3457999999999999988763210000 1246899999999998
Q ss_pred H---HHHHhhccccccccceEEEecChhhhhhc--CCCCCcEEEEEEeCCC---CCCCCCceeechhhHHHHHHHHHhcc
Q 041272 138 T---SSLLDKTTSKAEKGLVKLFNMCHSRMEEI--VPKSTAVRLVAFNLGY---LPGGDKSVITTSETTKMALEAAERIL 209 (267)
Q Consensus 138 a---~~~~~~~~~~~~~~~v~~~~~~~~~l~~~--~~~~~~~d~ii~~~~~---lp~~d~~~~~~~~~~~~~l~~~~~~L 209 (267)
| ++|++..+ +...+++.+.+..+.... .......++||+|++| +...... ..+...++...+.+.+
T Consensus 130 A~~~r~n~~~Ag---l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~---~~~~~~~~~~~l~~~~ 203 (249)
T d1o9ga_ 130 ARRLRERLTAEG---GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQV---PGQPVAGLLRSLASAL 203 (249)
T ss_dssp HHHHHHHHHHTT---SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCC---CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC---CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccc---hHHHHHHHHHHHHccC
Confidence 8 46777777 456677776655433221 1112356899999988 3221111 1234567777788887
Q ss_pred cCCcEEEEEE
Q 041272 210 IPGGLISMVV 219 (267)
Q Consensus 210 kpgG~l~i~~ 219 (267)
.....++++.
T Consensus 204 p~~s~~~it~ 213 (249)
T d1o9ga_ 204 PAHAVIAVTD 213 (249)
T ss_dssp CTTCEEEEEE
T ss_pred CCCcEEEEeC
Confidence 5545555543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.16 E-value=0.00059 Score=51.60 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=64.3
Q ss_pred HHhhhcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 87 VWKHVVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
+....+++|++||=.|. |. |..+..+|+..| ++|++++.+++..+.+++. | ...+ +. ..+.
T Consensus 20 l~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G-----~~vi~~~~~~~~~~~~~~l----G----a~~~--i~--~~~~ 82 (171)
T d1iz0a2 20 LKRAQARPGEKVLVQAAAGALGTAAVQVARAMG-----LRVLAAASRPEKLALPLAL----G----AEEA--AT--YAEV 82 (171)
T ss_dssp HHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTT-----CEEEEEESSGGGSHHHHHT----T----CSEE--EE--GGGH
T ss_pred HHHhCCCCCCEEEEEeccccchhhhhhhhcccc-----ccccccccccccccccccc----c----ccee--ee--hhhh
Confidence 33456889999999884 44 788888998864 6999999999888877652 2 1111 11 1121
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.........+|+++-..+ ..+.+..+.|+|||+++...
T Consensus 83 ~~~~~~~~g~D~v~d~~G-----------------~~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 83 PERAKAWGGLDLVLEVRG-----------------KEVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp HHHHHHTTSEEEEEECSC-----------------TTHHHHHTTEEEEEEEEEC-
T ss_pred hhhhhccccccccccccc-----------------hhHHHHHHHHhcCCcEEEEe
Confidence 111112235888776422 23577889999999997653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.14 E-value=0.0017 Score=48.73 Aligned_cols=104 Identities=21% Similarity=0.206 Sum_probs=73.1
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+..+|+=||+|. |..++..|..+| ++|+.+|.+++.+++.+.... .+++....+...+.+...
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lG-----A~V~~~D~~~~~l~~l~~~~~--------~~~~~~~~~~~~l~~~~~--- 94 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLG-----AQVQIFDINVERLSYLETLFG--------SRVELLYSNSAEIETAVA--- 94 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-----CEEEEEESCHHHHHHHHHHHG--------GGSEEEECCHHHHHHHHH---
T ss_pred CCcEEEEECCChHHHHHHHHHhhCC-----CEEEEEeCcHHHHHHHHHhhc--------ccceeehhhhhhHHHhhc---
Confidence 356999999999 999999999984 799999999999887776543 345665555556665443
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
..|++|...- +|...... -+-+++.+.+|||.++ ++...+.
T Consensus 95 ~aDivI~aal-ipG~~aP~--------lIt~~mv~~Mk~GSVI--VDvaidq 135 (168)
T d1pjca1 95 EADLLIGAVL-VPGRRAPI--------LVPASLVEQMRTGSVI--VDVAVDQ 135 (168)
T ss_dssp TCSEEEECCC-CTTSSCCC--------CBCHHHHTTSCTTCEE--EETTCTT
T ss_pred cCcEEEEeee-cCCcccCe--------eecHHHHhhcCCCcEE--EEeecCC
Confidence 4788888743 34432221 1236778889999988 5554333
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.11 E-value=0.0015 Score=49.69 Aligned_cols=98 Identities=16% Similarity=0.064 Sum_probs=67.5
Q ss_pred hhcCCCCEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----
Q 041272 90 HVVRKGDTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR---- 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~---- 163 (267)
..+++|++||=.|.+. |..+..+|+.. +++|++++.+++..+.+++.-.. .++.....+
T Consensus 25 ~~v~~G~~VlV~ga~ggvG~~aiqlak~~-----Ga~vi~~~~~~~~~~~~~~~Ga~----------~vi~~~~~~~~~~ 89 (182)
T d1v3va2 25 CGVKGGETVLVSAAAGAVGSVVGQIAKLK-----GCKVVGAAGSDEKIAYLKQIGFD----------AAFNYKTVNSLEE 89 (182)
T ss_dssp TCCCSSCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHTTCS----------EEEETTSCSCHHH
T ss_pred hCCCCCCEEEEEeCCCchhHHHHHHHHcc-----CCEEEEeCCCHHHHHHHHhhhhh----------hhcccccccHHHH
Confidence 3578999999888866 67888899886 47999999999888777763211 112211121
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..... ....+|+++-..+ .+.+++..+.|+|||.+++.-
T Consensus 90 ~~~~~-~~~Gvd~v~D~vG----------------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 90 ALKKA-SPDGYDCYFDNVG----------------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp HHHHH-CTTCEEEEEESSC----------------HHHHHHHGGGEEEEEEEEECC
T ss_pred HHHHh-hcCCCceeEEecC----------------chhhhhhhhhccCCCeEEeec
Confidence 11111 2235899887642 268899999999999997643
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.85 E-value=0.0045 Score=46.50 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=65.1
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-C----hhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-C----HSR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~----~~~ 163 (267)
..+++|++||=+|+|. |..+..+++..+ ..+|+++|.+++-.+.+++.-.. ..+.. + ...
T Consensus 24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g----~~~Vi~~~~~~~k~~~a~~~Ga~----------~~i~~~~~~~~~~~ 89 (176)
T d2jhfa2 24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG----AARIIGVDINKDKFAKAKEVGAT----------ECVNPQDYKKPIQE 89 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEECSCGGGHHHHHHTTCS----------EEECGGGCSSCHHH
T ss_pred hCCCCCCEEEEECCCCcHHHHHHHHHHcC----CceEEeecCcHHHHHHHHHhCCe----------eEEecCCchhHHHH
Confidence 4589999999999987 456677777765 37999999999999988874322 11211 1 111
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
...... ...+|+++-..+. ...++.+...+++| |.+++...
T Consensus 90 ~~~~~~-~~G~D~vid~~G~---------------~~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 90 VLTEMS-NGGVDFSFEVIGR---------------LDTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp HHHHHT-TSCBSEEEECSCC---------------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred HHHHHh-cCCCCEEEecCCc---------------hhHHHHHHHHHhcCCcceEEecC
Confidence 111111 2357888777433 46778888888887 55554433
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.67 E-value=0.0056 Score=45.85 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=62.1
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-----hh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-----SR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-----~~ 163 (267)
..+++|++||=+|+|. |..+..+++..+ ..+|+++|.+++.++.|++.= --+++.... ..
T Consensus 24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g----~~~Vi~~~~~~~rl~~a~~~G----------Ad~~in~~~~~~~~~~ 89 (175)
T d1cdoa2 24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG----AKRIIAVDLNPDKFEKAKVFG----------ATDFVNPNDHSEPISQ 89 (175)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEECSCGGGHHHHHHTT----------CCEEECGGGCSSCHHH
T ss_pred hCCCCCCEEEEEecCCccchHHHHHHHHh----hchheeecchHHHHHHHHHcC----------CcEEEcCCCcchhHHH
Confidence 4689999999999999 455566666654 379999999999998888631 112222111 11
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCc-EEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG-LISMV 218 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG-~l~i~ 218 (267)
..... ....+|+++-..+. ...+..+...+++|| ++++.
T Consensus 90 ~~~~~-~~~G~d~vid~~G~---------------~~~~~~a~~~~~~g~~~~~~~ 129 (175)
T d1cdoa2 90 VLSKM-TNGGVDFSLECVGN---------------VGVMRNALESCLKGWGVSVLV 129 (175)
T ss_dssp HHHHH-HTSCBSEEEECSCC---------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhh-ccCCcceeeeecCC---------------HHHHHHHHHHhhCCCcceeEE
Confidence 11111 12247788777433 467778888877764 44433
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.59 E-value=0.0044 Score=46.93 Aligned_cols=99 Identities=13% Similarity=0.012 Sum_probs=66.4
Q ss_pred hcCCCCEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh--
Q 041272 91 VVRKGDTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-- 166 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-- 166 (267)
.+++|++||=-|.+. |..+..+|+.. +++|+++.-+++-.+.+++.-.. ..+.-. .+..+
T Consensus 28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~-----Ga~Viat~~s~~k~~~~~~lGa~----------~vi~~~-~~~~~~~ 91 (176)
T d1xa0a2 28 LTPERGPVLVTGATGGVGSLAVSMLAKR-----GYTVEASTGKAAEHDYLRVLGAK----------EVLARE-DVMAERI 91 (176)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHT-----TCCEEEEESCTTCHHHHHHTTCS----------EEEECC--------
T ss_pred CCCCCCEEEEEeccchHHHHHHHHHHHc-----CCceEEecCchHHHHHHHhcccc----------eeeecc-hhHHHHH
Confidence 456788999999654 78889999987 47999999999988888763221 111111 11111
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
....+..+|+|+-+.+- ..+.+..+.|+|||+++.....
T Consensus 92 ~~~~~~gvD~vid~vgg----------------~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 92 RPLDKQRWAAAVDPVGG----------------RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp --CCSCCEEEEEECSTT----------------TTHHHHHHTEEEEEEEEECSCC
T ss_pred HHhhccCcCEEEEcCCc----------------hhHHHHHHHhCCCceEEEeecc
Confidence 11123479988877532 4688999999999999775543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.50 E-value=0.026 Score=45.98 Aligned_cols=132 Identities=11% Similarity=-0.040 Sum_probs=73.8
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
++|||+-||.|.++..+-+. |- ..+.++|+++.+.+.-+.|.. -.++.+|..++..... ..+|
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~----~~~~a~e~d~~a~~~~~~N~~----------~~~~~~Di~~~~~~~~--~~~d 63 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GF----RIICANEYDKSIWKTYESNHS----------AKLIKGDISKISSDEF--PKCD 63 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TC----EEEEEEECCHHHHHHHHHHCC----------SEEEESCTTTSCGGGS--CCCS
T ss_pred CeEEEeCcCcCHHHHHHHHC-CC----EEEEEEeCCHHHHHHHHHHCC----------CCCccCChhhCCHhHc--cccc
Confidence 47999999999999887765 21 346699999988887776542 1334455554433221 2589
Q ss_pred EEEEeCCCCCCCCCceeechhhH-----HHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEE
Q 041272 176 LVAFNLGYLPGGDKSVITTSETT-----KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWIC 247 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~~~~~~-----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (267)
+++..++.=+++...--....+. ..+ -++.+.++|.-+++=.+. ..........+...+..+...+|.+
T Consensus 64 ll~~g~PCq~fS~ag~~~g~~d~r~~l~~~~-~~~i~~~~Pk~~~lENV~--~~~~~~~~~~~~~~l~~l~~lGY~v 137 (324)
T d1dcta_ 64 GIIGGPPCQSWSEGGSLRGIDDPRGKLFYEY-IRILKQKKPIFFLAENVK--GMMAQRHNKAVQEFIQEFDNAGYDV 137 (324)
T ss_dssp EEEECCCCTTTSSSSCCCCSSSHHHHHHHHH-HHHHHHHCCSEEEEEEEG--GGGSGGGHHHHHHHHHHHHHHHEEE
T ss_pred EEeecccccccccccccccccccccchHHHH-HHHHHhhCCceeeccccc--cccccccchhhHHHHhHHhhCCCcc
Confidence 99999876554432211111111 222 235566789654433332 2222233444555555544445543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.47 E-value=0.0078 Score=45.76 Aligned_cols=97 Identities=16% Similarity=0.067 Sum_probs=62.4
Q ss_pred hcCCC--CEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh--
Q 041272 91 VVRKG--DTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM-- 164 (267)
Q Consensus 91 ~l~~~--~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l-- 164 (267)
.+++| ++||=.|. |.|..+..+|+..|. ..|++++.+++......+.+.. -.++.....++
T Consensus 25 ~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga----~~vi~~~~~~e~~~~l~~~~ga---------d~vi~~~~~~~~~ 91 (187)
T d1vj1a2 25 HISAGSNQTMVVSGAAGACGSLAGQIGHLLGC----SRVVGICGTQEKCLFLTSELGF---------DAAVNYKTGNVAE 91 (187)
T ss_dssp CCCTTSCCEEEESSTTSTTGGGHHHHHHHTTC----SEEEEEESSHHHHHHHHHHSCC---------SEEEETTSSCHHH
T ss_pred CCCCCCCCEEEEECCCchhhHHHHHHHHHcCC----cceecccchHHHHhhhhhcccc---------eEEeeccchhHHH
Confidence 45665 78998873 449999999998763 5788888777655544332211 12222222222
Q ss_pred --hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 165 --EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 165 --~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
....+ ..+|+++-..+ .+.++...+.|++||+++..
T Consensus 92 ~~~~~~~--~GvDvv~D~vG----------------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 92 QLREACP--GGVDVYFDNVG----------------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHHHHCT--TCEEEEEESSC----------------HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHhc--cCceEEEecCC----------------chhHHHHhhhccccccEEEe
Confidence 22332 35999987742 26788999999999999764
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.05 E-value=0.015 Score=44.17 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=61.7
Q ss_pred hhcCCCCEEEEecC--C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh--
Q 041272 90 HVVRKGDTVVDATC--G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM-- 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGc--G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l-- 164 (267)
..+++|.+||=+.. | .|..+..+|+..| ++|+++-.+++..+...+.+++.| ... ++..+..+.
T Consensus 24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~G-----a~vI~~v~~~~~~~~~~~~~~~lG----ad~--vi~~~~~~~~~ 92 (189)
T d1gu7a2 24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLN-----FNSISVIRDRPNLDEVVASLKELG----ATQ--VITEDQNNSRE 92 (189)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHT-----CEEEEEECCCTTHHHHHHHHHHHT----CSE--EEEHHHHHCGG
T ss_pred hCCCCCCEEEEEeCCCchHHHHHHHHHhhcC-----CeEEEEEecccccchHHhhhhhcc----ccE--EEeccccchhH
Confidence 35788888877733 3 3677888999874 688888666666666666666655 122 121111111
Q ss_pred -----hhcC-CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 165 -----EEIV-PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 165 -----~~~~-~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.+.. .....+|+++-..+ ...+..+.+.|+|||+++..
T Consensus 93 ~~~~v~~~~~~~g~~vdvv~D~vg----------------~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 93 FGPTIKEWIKQSGGEAKLALNCVG----------------GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp GHHHHHHHHHHHTCCEEEEEESSC----------------HHHHHHHHHTSCTTCEEEEC
T ss_pred HHHHHHHHHhhccCCceEEEECCC----------------cchhhhhhhhhcCCcEEEEE
Confidence 1110 01235888876532 25667888999999999764
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.04 E-value=0.058 Score=44.04 Aligned_cols=103 Identities=12% Similarity=-0.018 Sum_probs=62.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||+.||-|.++..|-+. |- .-|.++|+++.+++.-+.|.... .++|..++..... .+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~----~~v~a~e~d~~a~~~~~~N~~~~-----------~~~Di~~~~~~~~--~~ 71 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GA----ECVYSNEWDKYAQEVYEMNFGEK-----------PEGDITQVNEKTI--PD 71 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TC----EEEEEECCCHHHHHHHHHHHSCC-----------CBSCGGGSCGGGS--CC
T ss_pred CCCeEEEECccccHHHHHHHHC-CC----eEEEEEeCCHHHHHHHHHHCCCC-----------CcCchhcCchhhc--ce
Confidence 5689999999999999988664 21 34567999999999888776431 1234443332221 25
Q ss_pred EEEEEEeCCCCCCCCCceeech-----hhHHHHHHHHHhcccCCcEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTS-----ETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~-----~~~~~~l~~~~~~LkpgG~l 215 (267)
+|+++..++.=+++........ .....++ ++.+.++|.=.+
T Consensus 72 ~Dll~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~-~~i~~~kP~~~~ 117 (327)
T d2c7pa1 72 HDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIA-RIVREKKPKVVF 117 (327)
T ss_dssp CSEEEEECCCTTTCTTSCCCGGGSTTSCHHHHHH-HHHHHHCCSEEE
T ss_pred eeeeecccccchhhhhhhhcCCcccchhHHHHHH-HHHhccCCcEEe
Confidence 8999999876555432211111 1123333 445667896433
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.92 E-value=0.015 Score=43.39 Aligned_cols=96 Identities=14% Similarity=0.028 Sum_probs=64.0
Q ss_pred cCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh-hhc-
Q 041272 92 VRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM-EEI- 167 (267)
Q Consensus 92 l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l-~~~- 167 (267)
++++.+||=-|. | .|..+..+|+..| ++|+++.-+++..+.+++.-. .. ++. ..+. .+.
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~G-----a~Viat~~s~~k~~~~~~lGa--------d~--vi~--~~~~~~~~~ 83 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKRG-----YDVVASTGNREAADYLKQLGA--------SE--VIS--REDVYDGTL 83 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHT-----CCEEEEESSSSTHHHHHHHTC--------SE--EEE--HHHHCSSCC
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHcC-----CceEEEecCHHHHHHHHhhcc--------cc--eEe--ccchhchhh
Confidence 445667887664 3 3889999999984 799999999988888766321 11 121 1221 111
Q ss_pred -CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 -VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
......+|+++-+.+- ..+.+..+.|+|+|++++.-.
T Consensus 84 ~~~~~~gvd~vid~vgg----------------~~~~~~~~~l~~~G~iv~~G~ 121 (167)
T d1tt7a2 84 KALSKQQWQGAVDPVGG----------------KQLASLLSKIQYGGSVAVSGL 121 (167)
T ss_dssp CSSCCCCEEEEEESCCT----------------HHHHHHHTTEEEEEEEEECCC
T ss_pred hcccCCCceEEEecCcH----------------HHHHHHHHHhccCceEEEeec
Confidence 1123468988877432 688999999999999976544
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.82 E-value=0.026 Score=41.57 Aligned_cols=87 Identities=10% Similarity=0.008 Sum_probs=51.6
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
++|.=||+|. ++..+|+.+.. .+.+|+++|.+++.++.+++.- .+.....+. .. . ...|
T Consensus 1 MkI~iIG~G~--mG~~lA~~l~~--~g~~V~~~d~~~~~~~~a~~~~----------~~~~~~~~~---~~-~---~~~D 59 (165)
T d2f1ka2 1 MKIGVVGLGL--IGASLAGDLRR--RGHYLIGVSRQQSTCEKAVERQ----------LVDEAGQDL---SL-L---QTAK 59 (165)
T ss_dssp CEEEEECCSH--HHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHTT----------SCSEEESCG---GG-G---TTCS
T ss_pred CEEEEEeecH--HHHHHHHHHHH--CCCEEEEEECCchHHHHHHHhh----------ccceeeeec---cc-c---cccc
Confidence 4677787764 33333332211 1569999999999888776521 111111111 11 1 1467
Q ss_pred EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 176 LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
+|+...+ +....++++++...|+++-++
T Consensus 60 iIilavp------------~~~~~~vl~~l~~~l~~~~iv 87 (165)
T d2f1ka2 60 IIFLCTP------------IQLILPTLEKLIPHLSPTAIV 87 (165)
T ss_dssp EEEECSC------------HHHHHHHHHHHGGGSCTTCEE
T ss_pred cccccCc------------Hhhhhhhhhhhhhhcccccce
Confidence 7777632 345678899999988888866
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.027 Score=46.30 Aligned_cols=78 Identities=10% Similarity=-0.001 Sum_probs=48.1
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcE-EEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
.+|+|+.||.|.++..|-+. |- ..+ |.++|+++.+++.-+.|.. ...++.+|..++.....+..++
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G~---~~~~~~a~E~~~~a~~~~~~n~~---------~~~~~~~di~~~~~~~~~~~~~ 69 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-CI---PAQVVAAIDVNTVANEVYKYNFP---------HTQLLAKTIEGITLEEFDRLSF 69 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TC---SEEEEEEECCCHHHHHHHHHHCT---------TSCEECSCGGGCCHHHHHHHCC
T ss_pred CEEEEcCcCccHHHHHHHHc-CC---CCeEEEEEECCHHHHHHHHHHCC---------CCCcccCchhhCCHhHcCCCCc
Confidence 58999999999988777554 21 123 6799999998888777643 3334444444332211111258
Q ss_pred EEEEEeCCCCCC
Q 041272 175 RLVAFNLGYLPG 186 (267)
Q Consensus 175 d~ii~~~~~lp~ 186 (267)
|+++..++.-++
T Consensus 70 Dll~ggpPCq~f 81 (343)
T d1g55a_ 70 DMILMSPPCQPF 81 (343)
T ss_dssp SEEEECCC----
T ss_pred cEEEeecccccc
Confidence 999998765443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.42 E-value=0.057 Score=39.74 Aligned_cols=90 Identities=17% Similarity=0.142 Sum_probs=52.6
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEE
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL 176 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ 176 (267)
+|+=||||. ++..+|+.+....+..+|+|+|.+++.++.|++.-. +.....+..... ....|+
T Consensus 3 ~I~IIG~G~--mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~----------~~~~~~~~~~~~-----~~~~dl 65 (171)
T d2g5ca2 3 NVLIVGVGF--MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI----------IDEGTTSIAKVE-----DFSPDF 65 (171)
T ss_dssp EEEEESCSH--HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS----------CSEEESCGGGGG-----GTCCSE
T ss_pred EEEEEccCH--HHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc----------chhhhhhhhhhh-----cccccc
Confidence 578899875 333333322111124689999999999998887421 111111111111 114577
Q ss_pred EEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 177 VAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 177 ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
++...+ +.....+++++.+.++++.++
T Consensus 66 Iila~p------------~~~~~~vl~~l~~~~~~~~ii 92 (171)
T d2g5ca2 66 VMLSSP------------VRTFREIAKKLSYILSEDATV 92 (171)
T ss_dssp EEECSC------------HHHHHHHHHHHHHHSCTTCEE
T ss_pred ccccCC------------chhhhhhhhhhhccccccccc
Confidence 777632 345678889999999988766
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.35 E-value=0.024 Score=42.76 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=38.2
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHH
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~ 142 (267)
+..+||=||+|. |..++..|..+| +.|+.+|++++.+++.+...
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lG-----A~V~v~D~~~~~~~~l~~l~ 72 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLG-----AVVMATDVRAATKEQVESLG 72 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-----CEEEEECSCSTTHHHHHHTT
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcC-----CEEEEEeccHHHHHHHHHhh
Confidence 356999999999 899999999884 79999999999988887754
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.086 Score=41.79 Aligned_cols=87 Identities=11% Similarity=0.086 Sum_probs=57.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
+|+.||=-|+++| ++..+|+.+-. -+.+|+.+|.+++.++.+.+.++..+ ...++..+..|..+-.+.
T Consensus 9 k~Kv~lITGas~G-IG~aiA~~la~--~G~~Vv~~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~Dls~~~~v~~~v~~ 82 (257)
T d1xg5a_ 9 RDRLALVTGASGG-IGAAVARALVQ--QGLKVVGCARTVGNIEELAAECKSAG---YPGTLIPYRCDLSNEEDILSMFSA 82 (257)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEEccCCCHHHHHHHHHH
Confidence 4678999997765 44444443321 16899999999999999888887754 234666666655543221
Q ss_pred -CCCCCcEEEEEEeCCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~ 186 (267)
..+...+|+++.|.+..+.
T Consensus 83 ~~~~~g~iD~lVnnAg~~~~ 102 (257)
T d1xg5a_ 83 IRSQHSGVDICINNAGLARP 102 (257)
T ss_dssp HHHHHCCCSEEEECCCCCCC
T ss_pred HHHhcCCCCEEEecccccCC
Confidence 1122468999999876443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.089 Score=39.32 Aligned_cols=95 Identities=11% Similarity=0.043 Sum_probs=59.9
Q ss_pred CCCEEEEecCC--CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 94 KGDTVVDATCG--NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 94 ~~~~VLDlGcG--~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++||=.|.. .|..++.+|+.+| ++|+++..+++..+.+++. + --.++.-+..+....+. .
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~G-----a~Via~~~~~~k~~~~~~l----G------ad~vi~~~~~~~~~~l~-~ 94 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLG-----YQVVAVSGRESTHEYLKSL----G------ASRVLPRDEFAESRPLE-K 94 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTT-----CCEEEEESCGGGHHHHHHH----T------EEEEEEGGGSSSCCSSC-C
T ss_pred CCCcEEEEEccccchHHHHHHHHHcC-----CCeEEEecchhHHHHHHhh----c------cccccccccHHHHHHHH-h
Confidence 44577766543 3788899999874 7999999999988777652 2 11222211122222222 2
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+|.++-..+ ...+....+.|+++|+++....
T Consensus 95 ~~~~~vvD~Vg----------------g~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 95 QVWAGAIDTVG----------------DKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp CCEEEEEESSC----------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred hcCCeeEEEcc----------------hHHHHHHHHHhccccceEeecc
Confidence 35677654421 2578899999999999977644
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.07 Score=42.65 Aligned_cols=119 Identities=13% Similarity=0.020 Sum_probs=75.0
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------- 167 (267)
|++|.=|--|++.++..+|+.+-. -.+.+|+..+.+++.++.+.+.++..+ .++.++..|..+....
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~-~~g~~Vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dvs~~~sv~~~~~~~ 75 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCR-LFSGDVVLTARDVTRGQAAVQQLQAEG-----LSPRFHQLDIDDLQSIRALRDFL 75 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHH-HSSSEEEEEESSHHHHHHHHHHHHHTT-----CCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEEecCCHHHHHHHHHHH
Confidence 567755544556666666554310 014699999999999999999887755 5677777776655331
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceee----------chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVIT----------TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~----------~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
......+|++|.|.+........-.. ..-....+.+.+...|+++|+++.+.
T Consensus 76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 11224799999999874332111000 11122346677888899999876543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.79 E-value=0.06 Score=42.10 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=41.6
Q ss_pred EEEecChhhhhhcCCCCCcEEEEEEeCCCCCC-CCCceeec----hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPG-GDKSVITT----SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~-~d~~~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+++++|..++...++ +.++|+|+.++||--. .+...... .......++++.++|+|||.+++...
T Consensus 6 ~i~~gDcle~l~~lp-d~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~ 75 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVE-NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT 75 (256)
T ss_dssp SEEECCHHHHHHHSC-TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEeccHHHHHhhCc-CCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC
Confidence 356677766555554 3489999999998322 11111111 12345688899999999999876543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.78 E-value=0.03 Score=44.61 Aligned_cols=64 Identities=22% Similarity=0.093 Sum_probs=40.7
Q ss_pred EEecChhhhhhcCCCCCcEEEEEEeCCCCCC-CCCcee-echhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 156 LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPG-GDKSVI-TTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~-~d~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
++.+|.-++...++ +.++|+|+.++||-.. .+..-. .........++++.|+|||||.+++...
T Consensus 7 ~~~~D~le~l~~l~-d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 7 YDVCDCLDTLAKLP-DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp EEECCHHHHHHTSC-TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEechHHHHHhhCc-CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence 45545444444443 4589999999988321 111101 1123456788999999999999988764
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=94.62 E-value=0.055 Score=45.95 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=43.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~ 146 (267)
++++..++|+|+-.|..+..++...+. ...+|+++|.++...+..+++++.+.
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~--~~~kV~aFEP~p~n~~~LkkNi~~n~ 262 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKG--KFERVWMIEPDRINLQTLQNVLRRYT 262 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTS--CCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCC--CCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence 346789999999999999888876542 13689999999999999999987654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=94.32 E-value=0.16 Score=40.14 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=54.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|.++| ++..+|+.+-. -+++|+.+|.+++.++.+.+.++..+ .++..+..|..+... .
T Consensus 4 ~gK~alITGas~G-IG~aia~~la~--~Ga~V~~~~r~~~~l~~~~~~~~~~g-----~~~~~~~~Dv~~~~~v~~~~~~ 75 (260)
T d1zema1 4 NGKVCLVTGAGGN-IGLATALRLAE--EGTAIALLDMNREALEKAEASVREKG-----VEARSYVCDVTSEEAVIGTVDS 75 (260)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTTT-----SCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 4678887786655 44444443321 16899999999999999988887755 466666655543321 1
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|+++.|.+..
T Consensus 76 ~~~~~g~iDilVnnaG~~ 93 (260)
T d1zema1 76 VVRDFGKIDFLFNNAGYQ 93 (260)
T ss_dssp HHHHHSCCCEEEECCCCC
T ss_pred HHHHhCCCCeehhhhccc
Confidence 11224689999998764
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=93.83 E-value=0.069 Score=43.09 Aligned_cols=67 Identities=12% Similarity=0.021 Sum_probs=47.3
Q ss_pred ceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceee-----chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 153 LVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT-----TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 153 ~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+-+++++|..++...+++ .++|+|+.++||--..+..... ......+.+++++++|+|+|.+++.+.
T Consensus 12 ~~~l~~GD~le~l~~l~~-~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~ 83 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPE-ESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 83 (320)
T ss_dssp SEEEEESCHHHHGGGSCS-SCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCEEEehhHHHHHhhCcc-CCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccccc
Confidence 347788888877666654 5899999999995432221111 123346789999999999999998764
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.69 E-value=0.3 Score=38.29 Aligned_cols=85 Identities=16% Similarity=0.098 Sum_probs=58.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
+++.+|=-|.+. .++..+|+.+-. -+.+|+.+|.+++.++.+.+.++..+ .++..+..|..+..+.
T Consensus 9 enKvalITGas~-GIG~a~a~~la~--~Ga~V~~~~r~~~~l~~~~~~l~~~g-----~~~~~~~~Dvt~~~~v~~~~~~ 80 (251)
T d2c07a1 9 ENKVALVTGAGR-GIGREIAKMLAK--SVSHVICISRTQKSCDSVVDEIKSFG-----YESSGYAGDVSKKEEISEVINK 80 (251)
T ss_dssp SSCEEEEESTTS-HHHHHHHHHHTT--TSSEEEEEESSHHHHHHHHHHHHTTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHH--cCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 466777777554 577777766533 26799999999999999888887755 4677776666543221
Q ss_pred -CCCCCcEEEEEEeCCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~ 186 (267)
......+|+++.|.+..+.
T Consensus 81 ~~~~~g~iDilvnnag~~~~ 100 (251)
T d2c07a1 81 ILTEHKNVDILVNNAGITRD 100 (251)
T ss_dssp HHHHCSCCCEEEECCCCCCC
T ss_pred HHHhcCCceeeeeccccccc
Confidence 1223478999999876443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.25 Score=38.65 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=56.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.|..+|=-|++.| ++..+|+.+-. -+.+|+.+|.+++.++...+.++..+ .++..+..|..+....
T Consensus 6 ~Gkv~lITGas~G-IG~~ia~~la~--~G~~V~l~~r~~~~l~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~ 77 (244)
T d1yb1a_ 6 TGEIVLITGAGHG-IGRLTAYEFAK--LKSKLVLWDINKHGLEETAAKCKGLG-----AKVHTFVVDCSNREDIYSSAKK 77 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEeeCCCHHHHHHHHHH
Confidence 3667887787776 33333332211 16899999999999999988887755 5677776666655331
Q ss_pred -CCCCCcEEEEEEeCCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~ 186 (267)
.......|+++.|.+....
T Consensus 78 i~~~~g~idilinnag~~~~ 97 (244)
T d1yb1a_ 78 VKAEIGDVSILVNNAGVVYT 97 (244)
T ss_dssp HHHHTCCCSEEEECCCCCCC
T ss_pred HHHHcCCCceeEeecccccc
Confidence 1233468999999876433
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.39 E-value=0.34 Score=38.32 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=68.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC-hHHHHHHHHHHhhccccccccceEEEecChhhhhhc-----
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ-SEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI----- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s-~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~----- 167 (267)
.|+++|=-|++.| ++..+|+.+-. -+.+|+.+|.+ ++.++.+.+.+++.+ .++.++..|..+....
T Consensus 17 ~gK~~lITGas~G-IG~aia~~la~--~Ga~Vvi~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~D~~~~~~v~~~~~ 88 (272)
T d1g0oa_ 17 EGKVALVTGAGRG-IGREMAMELGR--RGCKVIVNYANSTESAEEVVAAIKKNG-----SDAACVKANVGVVEDIVRMFE 88 (272)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHH--TTCEEEEEESSCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--cCCEEEEEeCCchHHHHHHHHHHHhhC-----CceeeEeCCCCCHHHHHHHHH
Confidence 3778888888766 34444433321 16799999986 566777777666655 4666666665543221
Q ss_pred --CCCCCcEEEEEEeCCCCCCCCCceee----------chhhHHHHHHHHHhcccCCcEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGDKSVIT----------TSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d~~~~~----------~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
......+|+++.+.+........-.. .......+.+.+.+.|+.+|..++.
T Consensus 89 ~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 89 EAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence 11123689999998764443211110 0112244567777888878777654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.15 Score=38.50 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=62.4
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc------------------ccccceE
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK------------------AEKGLVK 155 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~------------------~~~~~v~ 155 (267)
.+|-=||+|+ | .++..++.. +..|+.+|.+++.++.++++++..-.. ....++.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~------G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~ 78 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 78 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred EEEEEECcCHHHHHHHHHHHhC------CCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcc
Confidence 3788889877 3 334444443 579999999999999998877642100 0012233
Q ss_pred EEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 156 LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
... ++.+.. .+.|+|+-. +....+...++++++.+.++++-++.-
T Consensus 79 ~~~----d~~~a~---~~ad~ViEa----------v~E~l~~K~~v~~~l~~~~~~~~ilas 123 (192)
T d1f0ya2 79 TST----DAASVV---HSTDLVVEA----------IVENLKVKNELFKRLDKFAAEHTIFAS 123 (192)
T ss_dssp EES----CHHHHT---TSCSEEEEC----------CCSCHHHHHHHHHHHTTTSCTTCEEEE
T ss_pred ccc----hhHhhh---cccceehhh----------cccchhHHHHHHHHHhhhcccCceeec
Confidence 321 111211 246777776 333456778999999999999988743
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.31 E-value=0.15 Score=40.17 Aligned_cols=118 Identities=14% Similarity=0.045 Sum_probs=70.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEE-EeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-----
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYG-LDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI----- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~g-iD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~----- 167 (267)
.|++||=-| |++.++..+|+.+-. -+.+|+. .+.+++.++.+.+.++..+ .++..+..|..+....
T Consensus 5 ~GK~alITG-as~GIG~aia~~la~--~G~~Vvi~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~D~~~~~~v~~~~~ 76 (259)
T d1ja9a_ 5 AGKVALTTG-AGRGIGRGIAIELGR--RGASVVVNYGSSSKAAEEVVAELKKLG-----AQGVAIQADISKPSEVVALFD 76 (259)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHH--TTCEEEEEESSCHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHH--cCCEEEEEcCCChHHHHHHHHHHHHcC-----CCceEecCCCCCHHHHHHHHH
Confidence 477888777 455566555554422 0567876 4677777888888888765 5677776666543221
Q ss_pred --CCCCCcEEEEEEeCCCCCCCCCceee----------chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGDKSVIT----------TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d~~~~~----------~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..+...+|+++.|.+..+..+..-.. .....-...+.+...++.+|.+++..
T Consensus 77 ~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 77 KAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp HHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 12234799999998875443221111 01112345566777777777665543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=93.17 E-value=0.36 Score=40.11 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=37.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCC----CcEEEEEeCChHHHHHHHHHHhh
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESS----AGCVYGLDIQSEALKSTSSLLDK 144 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p----~~~v~giD~s~~~i~~a~~~~~~ 144 (267)
.-.|+|+|+|+|.++..+.+.+.. .| ..+++-+|.|+.+.+.-++++..
T Consensus 80 ~~~ivE~GaG~G~La~dil~~l~~-~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~ 132 (365)
T d1zkda1 80 TLRLIEIGPGRGTMMADALRALRV-LPILYQSLSVHLVEINPVLRQKQQTLLAG 132 (365)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTT-SHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred cceEEecCCcccHHHHhhhhhhcc-cccccccceEEEeccchhHHHHHHHHhcc
Confidence 358999999999999888776532 11 35689999999987777776654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=93.16 E-value=0.28 Score=38.80 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=54.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|+++| ++..+|+.+-. -+++|+.+|.+++.++.+.+.+... .++.++..|..+..+ .
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~--~Ga~V~i~~r~~~~~~~~~~~l~~~------~~~~~~~~Dv~~~~~v~~~~~~ 75 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVR--YGAKVVIADIADDHGQKVCNNIGSP------DVISFVHCDVTKDEDVRNLVDT 75 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHCCT------TTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHhcCC------CceEEEEccCCCHHHHHHHHHH
Confidence 4678888887665 55555544322 1689999999999888887777553 356666655554322 1
Q ss_pred -CCCCCcEEEEEEeCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp 185 (267)
......+|+++.|.+...
T Consensus 76 ~~~~~g~iD~lVnnAG~~~ 94 (268)
T d2bgka1 76 TIAKHGKLDIMFGNVGVLS 94 (268)
T ss_dssp HHHHHSCCCEEEECCCCCC
T ss_pred HHHHcCCcceecccccccc
Confidence 112247899999987643
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=93.03 E-value=0.4 Score=37.68 Aligned_cols=86 Identities=14% Similarity=0.063 Sum_probs=56.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|.+.| ++..+|+.+-. -+++|+.+|.+++.++.+.+.+...+ .++.++..|..+..+ .
T Consensus 7 ~GK~alITGas~G-IG~aia~~la~--~Ga~V~~~~r~~~~l~~~~~~~~~~g-----~~~~~~~~Dv~~~~~v~~~~~~ 78 (259)
T d2ae2a_ 7 EGCTALVTGGSRG-IGYGIVEELAS--LGASVYTCSRNQKELNDCLTQWRSKG-----FKVEASVCDLSSRSERQELMNT 78 (259)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEeeCCCHHHHHHHHHH
Confidence 4778888886654 45455443322 16799999999999998888887755 466666665543221 1
Q ss_pred -CCC-CCcEEEEEEeCCCCCCC
Q 041272 168 -VPK-STAVRLVAFNLGYLPGG 187 (267)
Q Consensus 168 -~~~-~~~~d~ii~~~~~lp~~ 187 (267)
... ...+|+++.|.+..+..
T Consensus 79 ~~~~~~~~idilvnnAG~~~~~ 100 (259)
T d2ae2a_ 79 VANHFHGKLNILVNNAGIVIYK 100 (259)
T ss_dssp HHHHTTTCCCEEEECCCCCCCC
T ss_pred HHHHhCCCceEEEECCceeccC
Confidence 111 23689999998875443
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=92.88 E-value=0.11 Score=43.38 Aligned_cols=123 Identities=13% Similarity=0.201 Sum_probs=68.1
Q ss_pred CEEEEecCCCChHHHHHHHhc-----------C-CCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh
Q 041272 96 DTVVDATCGNGYDTLMMLKMV-----------A-DESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR 163 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~-----------~-~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (267)
-+|.|+||.+|..|+.+...+ + .+-|..+|+--|.-..--...=+.+.... .....-|+.+....
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~---~~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---DVDGVCFINGVPGS 129 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---SCTTCEEEEEEESC
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc---cCCCCeEEEecCCc
Confidence 479999999998885332211 1 11245677777766655444444443322 11222345444555
Q ss_pred hhhcCCCCCcEEEEEEe--CCCCCCCCCce-------ee---c------------hhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFN--LGYLPGGDKSV-------IT---T------------SETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~--~~~lp~~d~~~-------~~---~------------~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...-+.+..+++++.+. +++|......+ .. . ..+...+|+.=.+-|+|||+++++.
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 55544555577777655 56654321111 10 0 1234556766677899999999877
Q ss_pred ec
Q 041272 220 YV 221 (267)
Q Consensus 220 ~~ 221 (267)
..
T Consensus 210 ~g 211 (359)
T d1m6ex_ 210 LG 211 (359)
T ss_dssp EE
T ss_pred ec
Confidence 53
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.63 E-value=0.46 Score=33.04 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=52.9
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC-CCcE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK-STAV 174 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~-~~~~ 174 (267)
++|+=+|+ |.++..+++.+.. -+..|+.+|.+++.++.+++.. .+.++.++..+...+... -...
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~--~g~~v~vid~d~~~~~~~~~~~----------~~~vi~Gd~~~~~~l~~~~i~~a 66 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSE--KGHDIVLIDIDKDICKKASAEI----------DALVINGDCTKIKTLEDAGIEDA 66 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC----------SSEEEESCTTSHHHHHHTTTTTC
T ss_pred CEEEEECC--CHHHHHHHHHHHH--CCCCcceecCChhhhhhhhhhh----------hhhhccCcccchhhhhhcChhhh
Confidence 35666665 6787777765532 1468999999999888776531 345676666544332111 0135
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
|.++.... .+....+.....+.+.+...+
T Consensus 67 ~~vv~~t~------------~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 67 DMYIAVTG------------KEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp SEEEECCS------------CHHHHHHHHHHHHHTTCCCEE
T ss_pred hhhcccCC------------cHHHHHHHHHHHHHcCCceEE
Confidence 55555421 112223344455667777544
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=0.17 Score=39.77 Aligned_cols=87 Identities=13% Similarity=0.050 Sum_probs=56.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
+|+++|=-|++.| ++..+|+.+-. -+++|+.+|.+++.++.+.+.+.+.. ...++.++..|..+....
T Consensus 2 ~GKvalITGas~G-IG~aia~~la~--~Ga~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (254)
T d2gdza1 2 NGKVALVTGAAQG-IGRAFAEALLL--KGAKVALVDWNLEAGVQCKAALHEQF---EPQKTLFIQCDVADQQQLRDTFRK 75 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHTTTS---CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHhc---CCCcEEEEEeecCCHHHHHHHHHH
Confidence 4677888886654 55555554322 16899999999999888887775532 135677776666554321
Q ss_pred -CCCCCcEEEEEEeCCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~ 186 (267)
......+|+++.|.+....
T Consensus 76 ~~~~~G~iDilVnnAg~~~~ 95 (254)
T d2gdza1 76 VVDHFGRLDILVNNAGVNNE 95 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCS
T ss_pred HHHHcCCcCeeccccccccc
Confidence 1112468999999877443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.18 E-value=0.42 Score=37.41 Aligned_cols=86 Identities=15% Similarity=0.053 Sum_probs=53.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|.+.| ++..+|+.+-. -+++|+.+|.+++.++.+.+.+.+.. ..++..+..|..+... .
T Consensus 4 ~gK~~lITGas~G-IG~aia~~la~--~Ga~V~i~~r~~~~~~~~~~~l~~~~----g~~~~~~~~Dv~~~~~v~~~~~~ 76 (251)
T d1vl8a_ 4 RGRVALVTGGSRG-LGFGIAQGLAE--AGCSVVVASRNLEEASEAAQKLTEKY----GVETMAFRCDVSNYEEVKKLLEA 76 (251)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHH----CCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHHh----CCcEEEEEccCCCHHHHHHHHHH
Confidence 3678888887765 44444443321 16899999999998887776664432 2456666665544322 1
Q ss_pred -CCCCCcEEEEEEeCCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~ 186 (267)
......+|+++.|.+..+.
T Consensus 77 ~~~~~g~iDiLVnnAG~~~~ 96 (251)
T d1vl8a_ 77 VKEKFGKLDTVVNAAGINRR 96 (251)
T ss_dssp HHHHHSCCCEEEECCCCCCC
T ss_pred HHHHcCCCCEEEECCCCCCC
Confidence 1112368999999887544
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.08 E-value=0.48 Score=37.50 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=55.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|++.| ++..+|+.+-. -+++|+.+|.+++.++.+.+.+.+.+. ...++..+..|..+... .
T Consensus 3 ~gK~alITGas~G-IG~aia~~la~--~Ga~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~ 77 (274)
T d1xhla_ 3 SGKSVIITGSSNG-IGRSAAVIFAK--EGAQVTITGRNEDRLEETKQQILKAGV--PAEKINAVVADVTEASGQDDIINT 77 (274)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTC--CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcCC--CCcceEEEEeeCCCHHHHHHHHHH
Confidence 3678888887765 44444443321 168999999999999998888876541 12467777766554322 1
Q ss_pred -CCCCCcEEEEEEeCCC
Q 041272 168 -VPKSTAVRLVAFNLGY 183 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~ 183 (267)
......+|+++.|.+.
T Consensus 78 ~~~~~G~iDilVnnAG~ 94 (274)
T d1xhla_ 78 TLAKFGKIDILVNNAGA 94 (274)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHcCCceEEEeeccc
Confidence 1112368999999875
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.02 E-value=0.15 Score=40.63 Aligned_cols=86 Identities=17% Similarity=0.107 Sum_probs=55.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|++.| ++..+|+.+-. -+.+|+.+|.+++.++.+.+.+.+.+. ...++..+..|..+... .
T Consensus 4 ~gK~alVTGas~G-IG~aia~~la~--~Ga~V~l~~r~~~~l~~~~~~l~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~ 78 (272)
T d1xkqa_ 4 SNKTVIITGSSNG-IGRTTAILFAQ--EGANVTITGRSSERLEETRQIILKSGV--SEKQVNSVVADVTTEDGQDQIINS 78 (272)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTTTC--CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCcCcH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcCC--CCCceEEEEccCCCHHHHHHHHHH
Confidence 3667888786654 44444443321 167999999999999999888876541 12457777666554322 1
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|+++.|.+..
T Consensus 79 ~~~~~g~iDilvnnAG~~ 96 (272)
T d1xkqa_ 79 TLKQFGKIDVLVNNAGAA 96 (272)
T ss_dssp HHHHHSCCCEEEECCCCC
T ss_pred HHHHhCCceEEEeCCccc
Confidence 11224689999998764
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=91.89 E-value=1.1 Score=31.83 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=55.1
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
...+|.=+|+|. |......+...+- ..+++.+|++++..+--..-+.... .......+..++.+++.
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~---~~elvL~D~~~~~~~g~a~Dl~~a~--~~~~~~~~~~~d~~~~~------- 71 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGI---AEEFVIVDVVKDRTKGDALDLEDAQ--AFTAPKKIYSGEYSDCK------- 71 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTC---CSEEEEECSSHHHHHHHHHHHHGGG--GGSCCCEEEECCGGGGT-------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC---CcEEEEeecccchhHHHHHHHhccc--cccCCceEeeccHHHhc-------
Confidence 356888899765 4443333222221 2589999999875431111111100 01223344444443332
Q ss_pred cEEEEEEeCCCCCCCCCceee----chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVIT----TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..|+++...+........-.. ..+-..++.+++.+. .|.++++++..+
T Consensus 72 ~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNP 123 (146)
T d1ez4a1 72 DADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANP 123 (146)
T ss_dssp TCSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCc
Confidence 356777765543222211111 122334555566654 799998887653
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.88 Score=35.22 Aligned_cols=81 Identities=14% Similarity=0.037 Sum_probs=50.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh---hhcCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM---EEIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l---~~~~~~ 170 (267)
.|+++|=-|.++| ++..+|+.+-. -+.+|+.+|.+++.++...+.. ..+..+..|..+. ......
T Consensus 6 ~GK~~lITGas~G-IG~aia~~la~--~G~~V~~~~r~~~~l~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~~~ 73 (244)
T d1pr9a_ 6 AGRRVLVTGAGKG-IGRGTVQALHA--TGARVVAVSRTQADLDSLVREC---------PGIEPVCVDLGDWEATERALGS 73 (244)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHS---------TTCEEEECCTTCHHHHHHHHTT
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--cCCEEEEEECCHHHHHHHHHhc---------CCCeEEEEeCCCHHHHHHHHHH
Confidence 5788998887665 45444444321 1689999999998877665543 2344455444433 333333
Q ss_pred CCcEEEEEEeCCCCCC
Q 041272 171 STAVRLVAFNLGYLPG 186 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~ 186 (267)
-..+|+++.|.+..+.
T Consensus 74 ~g~iDilVnnAg~~~~ 89 (244)
T d1pr9a_ 74 VGPVDLLVNNAAVALL 89 (244)
T ss_dssp CCCCCEEEECCCCCCC
T ss_pred hCCceEEEeccccccc
Confidence 4579999999876443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.57 E-value=1.5 Score=31.17 Aligned_cols=116 Identities=13% Similarity=0.037 Sum_probs=60.0
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+.+|-=+|+|. |......+...+- ..+++-+|+.++..+--..-+.... ......+.+..++.+++.
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l---~~el~L~Di~~~~~~g~a~Dl~~~~-~~~~~~~~~~~~d~~~l~------- 73 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGI---ADEIVLIDANESKAIGDAMDFNHGK-VFAPKPVDIWHGDYDDCR------- 73 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTC---CSEEEEECSSHHHHHHHHHHHHHHT-TSSSSCCEEEECCGGGTT-------
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCC---CceEEEEeeccccccchhccHhhCc-cccCCCeEEEECCHHHhc-------
Confidence 456889999865 4433333333222 3589999999987432222222211 011234445444443332
Q ss_pred cEEEEEEeCCCCCCCCCceee----chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVIT----TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+.|+++...+.-......-.. ..+..+++.+++.+. .|.|+++++..+
T Consensus 74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivvtNP 125 (148)
T d1ldna1 74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVATNP 125 (148)
T ss_dssp TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECSSS
T ss_pred cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEecCc
Confidence 357777776553322211111 223335566666665 699998876653
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=91.20 E-value=0.43 Score=37.49 Aligned_cols=85 Identities=15% Similarity=0.035 Sum_probs=53.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|.+.| ++..+|+.+-. -+++|+.+|.+++.++.+.+.+...+ ...++..+..|..+..+ .
T Consensus 3 ~gK~alITGas~G-IG~aia~~la~--~Ga~V~i~~r~~~~l~~~~~~~~~~~---~~~~~~~~~~Dvt~~~~v~~~~~~ 76 (258)
T d1iy8a_ 3 TDRVVLITGGGSG-LGRATAVRLAA--EGAKLSLVDVSSEGLEASKAAVLETA---PDAEVLTTVADVSDEAQVEAYVTA 76 (258)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHC---TTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhhC---CCCeEEEEeccCCCHHHHHHHHHH
Confidence 3667888887765 33333333211 16899999999999988887776543 13466666666554322 1
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|+++.|.+..
T Consensus 77 ~~~~~G~iDiLVnnAG~~ 94 (258)
T d1iy8a_ 77 TTERFGRIDGFFNNAGIE 94 (258)
T ss_dssp HHHHHSCCSEEEECCCCC
T ss_pred HHHHhCCCCEEEECCccc
Confidence 11124689999998764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=90.92 E-value=0.58 Score=36.71 Aligned_cols=85 Identities=14% Similarity=0.055 Sum_probs=55.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.|++||=.|+..| ++..+|+.+-. -+.+|+.+|.+++.++.+.+.++..+ .++.++..|..+..+.
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~--~G~~V~i~~r~~~~l~~~~~~~~~~~-----~~~~~~~~D~s~~~~~~~~~~~ 76 (258)
T d1ae1a_ 5 KGTTALVTGGSKG-IGYAIVEELAG--LGARVYTCSRNEKELDECLEIWREKG-----LNVEGSVCDLLSRTERDKLMQT 76 (258)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEeecCCHHHHHHHHHH
Confidence 4778998888655 44444433211 16899999999999999888887755 5566666555543321
Q ss_pred -CCC-CCcEEEEEEeCCCCCC
Q 041272 168 -VPK-STAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 -~~~-~~~~d~ii~~~~~lp~ 186 (267)
... +...|+++.+.+..+.
T Consensus 77 ~~~~~~g~idilinnag~~~~ 97 (258)
T d1ae1a_ 77 VAHVFDGKLNILVNNAGVVIH 97 (258)
T ss_dssp HHHHTTSCCCEEEECCCCCCC
T ss_pred HHHHhCCCcEEEecccccccc
Confidence 111 2468899888766444
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=90.90 E-value=0.34 Score=38.09 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=52.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC-hHHHHHHHHHHhhccccccccceEEEecChhhhhhc-----
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ-SEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI----- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s-~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~----- 167 (267)
.|+++|=-|++.| ++..+|+.+-. -+.+|+.+|.+ ++.++.+.+.+.... ..++.++..|..+....
T Consensus 3 ~gK~alITGas~G-IG~aiA~~la~--~Ga~V~~~~r~~~~~~~~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~ 75 (260)
T d1x1ta1 3 KGKVAVVTGSTSG-IGLGIATALAA--QGADIVLNGFGDAAEIEKVRAGLAAQH----GVKVLYDGADLSKGEAVRGLVD 75 (260)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHH--TTCEEEEECCSCHHHHHHHHHHHHHHH----TSCEEEECCCTTSHHHHHHHHH
T ss_pred CcCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEeCCcHHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHH
Confidence 4677887676655 44444443321 16799999987 566777666664432 25677776666554321
Q ss_pred --CCCCCcEEEEEEeCCCCCC
Q 041272 168 --VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~ 186 (267)
......+|+++.|.+....
T Consensus 76 ~~~~~~G~iDiLVnnAG~~~~ 96 (260)
T d1x1ta1 76 NAVRQMGRIDILVNNAGIQHT 96 (260)
T ss_dssp HHHHHHSCCSEEEECCCCCCC
T ss_pred HHHHHhCCCcEEEeecccccC
Confidence 1112468999999887443
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.50 E-value=1.5 Score=34.04 Aligned_cols=81 Identities=12% Similarity=0.085 Sum_probs=53.6
Q ss_pred EEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------CCC
Q 041272 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI-------VPK 170 (267)
Q Consensus 98 VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-------~~~ 170 (267)
+|=-|++. .++..+|+.+-. -+++|+.+|++++.++.+.+.++..+ .++..+..|..+.... ...
T Consensus 4 alITGas~-GIG~aia~~la~--~Ga~V~~~~r~~~~l~~~~~~i~~~g-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (255)
T d1gega_ 4 ALVTGAGQ-GIGKAIALRLVK--DGFAVAIADYNDATAKAVASEINQAG-----GHAVAVKVDVSDRDQVFAAVEQARKT 75 (255)
T ss_dssp EEEETTTS-HHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEcCCcc-HHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 45566554 455555554322 16899999999999999888887755 5677776666544321 112
Q ss_pred CCcEEEEEEeCCCCCC
Q 041272 171 STAVRLVAFNLGYLPG 186 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~ 186 (267)
-..+|+++.|.+..+.
T Consensus 76 ~g~iDilVnnAG~~~~ 91 (255)
T d1gega_ 76 LGGFDVIVNNAGVAPS 91 (255)
T ss_dssp TTCCCEEEECCCCCCC
T ss_pred hCCccEEEeccccccc
Confidence 2479999999887544
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.50 E-value=1.4 Score=30.95 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=54.7
Q ss_pred EEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 97 TVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 97 ~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
+|-=+|.|. |......+...+- ..+++-+|++++.++--..-+.... ....+.....++.+++. ..|
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l---~~el~L~Di~~~~~~g~~~Dl~~~~--~~~~~~~~~~~~~~~~~-------~ad 69 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLMKGF---AREMVLIDVDKKRAEGDALDLIHGT--PFTRRANIYAGDYADLK-------GSD 69 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC---CSEEEEECSSHHHHHHHHHHHHHHG--GGSCCCEEEECCGGGGT-------TCS
T ss_pred EEEEECcCHHHHHHHHHHHhCCC---CCEEEEEecccccccchhccccccc--cccccccccCCcHHHhc-------CCC
Confidence 566678765 4443332222222 3589999999876542222222111 01234444444443332 356
Q ss_pred EEEEeCCCCCCCCCceee----chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 176 LVAFNLGYLPGGDKSVIT----TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+++...+..+.....-.. ..+-..++.+.+.+. .|+++++++..
T Consensus 70 ivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvtN 117 (140)
T d1a5za1 70 VVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTN 117 (140)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSS
T ss_pred EEEEecccccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeCC
Confidence 777776553332221111 112234444555544 79999887665
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=90.46 E-value=0.45 Score=34.69 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=53.1
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe-cChhhhhhcCCCCC
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN-MCHSRMEEIVPKST 172 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~~~~ 172 (267)
++|-=||+|. | .++..|++. +.+|+.+|.+++-++..++.-..... .......... ....++.+...
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~--- 71 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDIDAQRIKEIQDRGAIIAE-GPGLAGTAHPDLLTSDIGLAVK--- 71 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHTSEEEE-SSSCCEEECCSEEESCHHHHHT---
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHcCCCchh-hhhhhhhhhhhhhhhhhHhHhc---
Confidence 4667788876 2 223334443 46999999999888777654211100 0000000000 00112222221
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
..|+++...+ ......+++++...|+++-.++
T Consensus 72 ~aD~iii~v~------------~~~~~~~~~~i~~~l~~~~~iv 103 (184)
T d1bg6a2 72 DADVILIVVP------------AIHHASIAANIASYISEGQLII 103 (184)
T ss_dssp TCSEEEECSC------------GGGHHHHHHHHGGGCCTTCEEE
T ss_pred CCCEEEEEEc------------hhHHHHHHHHhhhccCCCCEEE
Confidence 3567766531 2345789999999999988654
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=90.40 E-value=0.82 Score=35.60 Aligned_cols=84 Identities=11% Similarity=0.017 Sum_probs=53.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.|+++|=-|.+. .++..+|+.+-. -+.+|+.+|.+++.++.+.+.+.. ..++.++..|..+....
T Consensus 5 ~gK~alVTGas~-GIG~aia~~la~--~Ga~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~ 75 (251)
T d1zk4a1 5 DGKVAIITGGTL-GIGLAIATKFVE--EGAKVMITGRHSDVGEKAAKSVGT------PDQIQFFQHDSSDEDGWTKLFDA 75 (251)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHhCC------CCcEEEEEccCCCHHHHHHHHHH
Confidence 367788777555 455555544321 168999999999988888776643 24677777666543321
Q ss_pred -CCCCCcEEEEEEeCCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~ 186 (267)
......+|+++.|.+..+.
T Consensus 76 ~~~~~G~iDiLVnnAg~~~~ 95 (251)
T d1zk4a1 76 TEKAFGPVSTLVNNAGIAVN 95 (251)
T ss_dssp HHHHHSSCCEEEECCCCCCC
T ss_pred HHHHhCCceEEEeccccccc
Confidence 1112468999999877544
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=90.06 E-value=0.84 Score=35.59 Aligned_cols=84 Identities=15% Similarity=0.062 Sum_probs=55.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------- 167 (267)
|+.+|=-|.+. .++..+|+.+-. -+.+|+.+|.+++.++.+.+.++..+ .++.++..|..+....
T Consensus 2 gKValITGas~-GIG~aia~~la~--~Ga~V~i~~r~~~~l~~~~~~l~~~g-----~~~~~~~~Dvs~~~~v~~~~~~~ 73 (257)
T d2rhca1 2 SEVALVTGATS-GIGLEIARRLGK--EGLRVFVCARGEEGLRTTLKELREAG-----VEADGRTCDVRSVPEIEALVAAV 73 (257)
T ss_dssp CCEEEEESCSS-HHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEeecCCHHHHHHHHHHH
Confidence 45566667554 455555554322 16899999999999999888887755 4677776665544321
Q ss_pred CCCCCcEEEEEEeCCCCCC
Q 041272 168 VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~ 186 (267)
......+|+++.|.+....
T Consensus 74 ~~~~g~iDilVnnAG~~~~ 92 (257)
T d2rhca1 74 VERYGPVDVLVNNAGRPGG 92 (257)
T ss_dssp HHHTCSCSEEEECCCCCCC
T ss_pred HHHhCCCCEEEecccccCC
Confidence 1223478999999876433
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.69 E-value=0.28 Score=38.41 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=66.2
Q ss_pred CCCEEEEecCCCC-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c--
Q 041272 94 KGDTVVDATCGNG-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I-- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~-- 167 (267)
.|+++|=-|++++ .++..+|+++-. -+++|+..|.++...+.+++.....+ +..++..|..+..+ .
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~--~Ga~V~i~~~~~~~~~~~~~~~~~~~------~~~~~~~D~~~~~~v~~~~~ 78 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKE--AGAEVALSYQAERLRPEAEKLAEALG------GALLFRADVTQDEELDALFA 78 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHHHHHTT------CCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHH--CCCEEEEEeCcHHHHHHHHHhhhccC------cccccccccCCHHHHHHHHH
Confidence 4778999997542 244444433311 16799999999888877776655533 44455555443322 1
Q ss_pred --CCCCCcEEEEEEeCCCCCCCC---Cceeech-----------hhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGD---KSVITTS-----------ETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d---~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
......+|+++.|.+..+... ....... .......+.+...++.+|.++...
T Consensus 79 ~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~is 146 (256)
T d1ulua_ 79 GVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT 146 (256)
T ss_dssp HHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred HHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence 111246999999877643210 0111111 112334456667778888876554
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.36 E-value=1.1 Score=34.59 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=49.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE------- 166 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~------- 166 (267)
.|+++|=-|.+.| ++..+|+.+-. -+.+|+.+|.+++.++...+.+.. +...+..|..+...
T Consensus 3 ~gK~alITGas~G-IG~a~a~~l~~--~G~~Vv~~~r~~~~l~~~~~~~~~--------~~~~~~~Dv~~~~~v~~~~~~ 71 (243)
T d1q7ba_ 3 EGKIALVTGASRG-IGRAIAETLAA--RGAKVIGTATSENGAQAISDYLGA--------NGKGLMLNVTDPASIESVLEK 71 (243)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHGG--------GEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHhCC--------CCcEEEEEecCHHHhhhhhhh
Confidence 3667777776654 45555544322 167999999999988877665533 34444444443221
Q ss_pred cCCCCCcEEEEEEeCCCCCC
Q 041272 167 IVPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~ 186 (267)
.......+|+++.|.+..+.
T Consensus 72 ~~~~~g~iDilVnnAg~~~~ 91 (243)
T d1q7ba_ 72 IRAEFGEVDILVNNAGITRD 91 (243)
T ss_dssp HHHHTCSCSEEEECCCCCCC
T ss_pred hhcccCCcceehhhhhhccc
Confidence 11223478999999876444
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=89.22 E-value=1 Score=35.62 Aligned_cols=87 Identities=13% Similarity=0.031 Sum_probs=55.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.|+++|=-|++.| ++..+|+.+-. -+.+|+.+|.+++.++.+.+.+.... ..++.++..|..+....
T Consensus 24 ~gK~alITGas~G-IG~aiA~~la~--~Ga~Vii~~r~~~~l~~~~~~l~~~~----g~~~~~~~~D~~~~~~v~~~~~~ 96 (294)
T d1w6ua_ 24 QGKVAFITGGGTG-LGKGMTTLLSS--LGAQCVIASRKMDVLKATAEQISSQT----GNKVHAIQCDVRDPDMVQNTVSE 96 (294)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHH----SSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--cCCEEEEEECCHHHHHHHHHHHHHhc----CCceEEEEecccChHHHHHHhhh
Confidence 4678888887765 55555543321 16799999999998887777665432 24566666555543321
Q ss_pred -CCCCCcEEEEEEeCCCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLPGG 187 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~~ 187 (267)
......+|+++.+.+..+..
T Consensus 97 ~~~~~g~iDilvnnAg~~~~~ 117 (294)
T d1w6ua_ 97 LIKVAGHPNIVINNAAGNFIS 117 (294)
T ss_dssp HHHHTCSCSEEEECCCCCCCS
T ss_pred hhhhccccchhhhhhhhcccc
Confidence 12234689999998764443
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.91 E-value=2.8 Score=31.05 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=25.3
Q ss_pred CEEEEecCCC-Ch-HHHHHHHhcCCCCCCcEEEEEeCChHHHHHHH
Q 041272 96 DTVVDATCGN-GY-DTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139 (267)
Q Consensus 96 ~~VLDlGcG~-G~-~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~ 139 (267)
++|-=+|+|. |. ++..+|+. +-+|+|+|++++.++.-+
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~------g~~V~g~D~n~~~i~~ln 40 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR------GHEVIGVDVSSTKIDLIN 40 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSCHHHHHHHH
T ss_pred CEEEEECCCHhHHHHHHHHHhC------CCcEEEEeCCHHHHHHhc
Confidence 3566677776 32 23444443 468999999999887655
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.89 E-value=1 Score=35.15 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=55.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.|+++|=-|.+ +.++..+|+.+-. -+++|+.+|.+++.++.+.+.++..+ .++.++..|..+..+.
T Consensus 10 ~gK~alITGas-~GIG~aia~~la~--~Ga~V~~~~r~~~~~~~~~~~l~~~g-----~~~~~~~~Dvs~~~~~~~~~~~ 81 (255)
T d1fmca_ 10 DGKCAIITGAG-AGIGKEIAITFAT--AGASVVVSDINADAANHVVDEIQQLG-----GQAFACRCDITSEQELSALADF 81 (255)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHT--TTCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 46777766655 4566666655432 16899999999999999888887755 4666666665543221
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|+++.|.+..
T Consensus 82 ~~~~~g~iDilvnnAG~~ 99 (255)
T d1fmca_ 82 AISKLGKVDILVNNAGGG 99 (255)
T ss_dssp HHHHHSSCCEEEECCCCC
T ss_pred HHHHcCCCCEeeeCCcCC
Confidence 11124689999998763
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.56 E-value=0.89 Score=35.44 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=49.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|.+.| ++..+|+.+-. -+.+|+.+|.+++.++...+.+. .+..++..|..+..+ .
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~--~Ga~V~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~ 73 (253)
T d1hxha_ 5 QGKVALVTGGASG-VGLEVVKLLLG--EGAKVAFSDINEAAGQQLAAELG--------ERSMFVRHDVSSEADWTLVMAA 73 (253)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHHC--------TTEEEECCCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHhC--------CCeEEEEeecCCHHHHHHHHHH
Confidence 4678887786554 55555544322 16899999999988877666543 244455444443222 1
Q ss_pred -CCCCCcEEEEEEeCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp 185 (267)
......+|+++.|.+...
T Consensus 74 ~~~~~g~iDilVnnAG~~~ 92 (253)
T d1hxha_ 74 VQRRLGTLNVLVNNAGILL 92 (253)
T ss_dssp HHHHHCSCCEEEECCCCCC
T ss_pred HHHHhCCCCeEEecccccC
Confidence 111246899999987644
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=88.33 E-value=2.4 Score=28.93 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=54.9
Q ss_pred CCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC-CCcEEEEEEeC
Q 041272 103 CGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK-STAVRLVAFNL 181 (267)
Q Consensus 103 cG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~-~~~~d~ii~~~ 181 (267)
||.|..+..+++.+. +..|+.+|.+++.++..+. ..+.++.++..+-..+... -...+.++...
T Consensus 6 ~G~g~~g~~l~~~L~----~~~i~vi~~d~~~~~~~~~-----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~ 70 (129)
T d2fy8a1 6 CGWSESTLECLRELR----GSEVFVLAEDENVRKKVLR-----------SGANFVHGDPTRVSDLEKANVRGARAVIVNL 70 (129)
T ss_dssp ESCCHHHHHHHHTSC----GGGEEEEESCTTHHHHHHH-----------TTCEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred ECCCHHHHHHHHHHc----CCCCEEEEcchHHHHHHHh-----------cCccccccccCCHHHHHHhhhhcCcEEEEec
Confidence 677899999999875 3678899999998776643 2456777776543322111 11345555542
Q ss_pred CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 182 GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 182 ~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+ .+.....+-...+.+.|...++....
T Consensus 71 ~------------~d~~n~~~~~~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 71 E------------SDSETIHCILGIRKIDESVRIIAEAE 97 (129)
T ss_dssp S------------SHHHHHHHHHHHHHHCSSSCEEEECS
T ss_pred c------------chhhhHHHHHHHHHHCCCceEEEEEc
Confidence 1 12222334445667788877755443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=87.94 E-value=1.7 Score=30.46 Aligned_cols=113 Identities=14% Similarity=0.053 Sum_probs=52.9
Q ss_pred CEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE-ecChhhhhhcCCCCCc
Q 041272 96 DTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF-NMCHSRMEEIVPKSTA 173 (267)
Q Consensus 96 ~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~~~~~~ 173 (267)
++|.=+|.|. |.....++...+- ..+++-+|++++..+....-+..... ....+.++. .++.+++. +
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l---~~el~L~Di~~~~~~~~~~d~~~~~~-~~~~~~~i~~~~~~~~~~-------d 69 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQL---ARELVLLDVVEGIPQGKALDMYESGP-VGLFDTKVTGSNDYADTA-------N 69 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---CSEEEEECSSSSHHHHHHHHHHTTHH-HHTCCCEEEEESCGGGGT-------T
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC---CceEEEeccccccchhhhhhhhcccc-hhcccceEEecCCHHHhc-------C
Confidence 3566778654 3332222222221 35899999999766543333322110 011233333 23332322 3
Q ss_pred EEEEEEeCCCC--CCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYL--PGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~l--p~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.|+++...+.. |..++.-.. ..+-..++.+.+.+. .|+++++++..
T Consensus 70 advvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtN 119 (142)
T d1guza1 70 SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSN 119 (142)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCS
T ss_pred CeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEEecC
Confidence 56777665542 322221000 112224444555544 59999887665
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.83 E-value=1.1 Score=34.91 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=49.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|+++| ++..+|+.+-. -+++|+.+|.+++.++...+.. .++.++..|..+..+ .
T Consensus 5 ~GK~alITGas~G-IG~aia~~la~--~Ga~V~i~~r~~~~~~~~~~~~---------~~~~~~~~Dvs~~~~v~~~~~~ 72 (250)
T d1ydea1 5 AGKVVVVTGGGRG-IGAGIVRAFVN--SGARVVICDKDESGGRALEQEL---------PGAVFILCDVTQEDDVKTLVSE 72 (250)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC---------TTEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHhc---------CCCeEEEccCCCHHHHHHHHHH
Confidence 4778888887665 55555543321 1689999999998877665533 345556555544322 1
Q ss_pred -CCCCCcEEEEEEeCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp 185 (267)
......+|+++.|.+..+
T Consensus 73 ~~~~~g~iDilVnnAG~~~ 91 (250)
T d1ydea1 73 TIRRFGRLDCVVNNAGHHP 91 (250)
T ss_dssp HHHHHSCCCEEEECCCCCC
T ss_pred HHHhcCCCCEEEecccccc
Confidence 111246899999988643
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.32 E-value=2.6 Score=32.28 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=50.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh---hhcCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM---EEIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l---~~~~~~ 170 (267)
.|+++|=-|.+.| ++..+|+.+-. -+.+|+.+|.+++.++...+.. ..+..+..|..+. .+....
T Consensus 4 ~GK~alITGas~G-IG~aia~~la~--~Ga~V~~~~r~~~~l~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~ 71 (242)
T d1cyda_ 4 SGLRALVTGAGKG-IGRDTVKALHA--SGAKVVAVTRTNSDLVSLAKEC---------PGIEPVCVDLGDWDATEKALGG 71 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHS---------TTCEEEECCTTCHHHHHHHHTT
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHhc---------CCCeEEEEeCCCHHHHHHHHHH
Confidence 4778888887665 55554543321 1689999999988776655433 2344454444433 333333
Q ss_pred CCcEEEEEEeCCCCCC
Q 041272 171 STAVRLVAFNLGYLPG 186 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~ 186 (267)
-..+|+++.|.+..+.
T Consensus 72 ~g~iDilVnnAg~~~~ 87 (242)
T d1cyda_ 72 IGPVDLLVNNAALVIM 87 (242)
T ss_dssp CCCCSEEEECCCCCCC
T ss_pred cCCCeEEEECCccccc
Confidence 3579999999876443
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=87.25 E-value=2.9 Score=31.94 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=64.8
Q ss_pred CCCEEEEecCCC--Ch---HHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh----
Q 041272 94 KGDTVVDATCGN--GY---DTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM---- 164 (267)
Q Consensus 94 ~~~~VLDlGcG~--G~---~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l---- 164 (267)
.|++||=-|+++ |. ++..|++. +.+|+..+.+++..+.+++.....+ +......+..+.
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~------G~~V~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 71 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQNDKLKGRVEEFAAQLG------SDIVLQCDVAEDASID 71 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHT------TCEEEEEESSTTTHHHHHHHHHHTT------CCCEEECCTTCHHHHH
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHhhcC------CcceeecccchHHHHH
Confidence 478899988766 52 44455544 6899999999888888777666544 223333222221
Q ss_pred ---hhcCCCCCcEEEEEEeCCCCCCCCCc---eee-c-----------hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 ---EEIVPKSTAVRLVAFNLGYLPGGDKS---VIT-T-----------SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ---~~~~~~~~~~d~ii~~~~~lp~~d~~---~~~-~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..........|..+.+.+........ ... . ........+.+...+++|+.+++...
T Consensus 72 ~~~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss 145 (258)
T d1qsga_ 72 TMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY 145 (258)
T ss_dssp HHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HHHHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecc
Confidence 11233345789998886553222110 000 0 11123444556677788887766543
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=86.87 E-value=2.9 Score=29.67 Aligned_cols=115 Identities=14% Similarity=0.080 Sum_probs=54.9
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe-cChhhhhhcCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN-MCHSRMEEIVPKS 171 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~~~ 171 (267)
|..+|-=+|+|. |.....++...+ -.++.-+|+.++..+--..-+.... .....+..+.. ++.+++.
T Consensus 2 p~~KI~IIGaG~VG~~~a~~l~~~~----l~el~L~Di~~~~~~g~a~Dl~~~~-~~~~~~~~v~~~~~~~~~~------ 70 (150)
T d1t2da1 2 PKAKIVLVGSGMIGGVMATLIVQKN----LGDVVLFDIVKNMPHGKALDTSHTN-VMAYSNCKVSGSNTYDDLA------ 70 (150)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT----CCEEEEECSSSSHHHHHHHHHHTHH-HHHTCCCCEEEECCGGGGT------
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC----CCeEEEEeccCCcceeeecchhhhc-cccCCCcEEEecccccccC------
Confidence 456888899875 333333333322 2589999998875442222222210 00112333332 2222322
Q ss_pred CcEEEEEEeCCC--CCCCCC----cee---echhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGY--LPGGDK----SVI---TTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~--lp~~d~----~~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..|+++...+. .|.... ... ...+...++.+++.+. .|+++++++..+
T Consensus 71 -~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNP 127 (150)
T d1t2da1 71 -GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNP 127 (150)
T ss_dssp -TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSS
T ss_pred -CCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCc
Confidence 35677666654 333211 000 1122234444444444 699999887663
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=86.63 E-value=0.36 Score=36.07 Aligned_cols=81 Identities=11% Similarity=0.014 Sum_probs=49.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.|++||=.|.+.| ++..+++.+-. -+.+|+.++.+++.++.+.+.+.... ..........+...+.+... .
T Consensus 22 ~gK~vlItGasgG-IG~~ia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~---~ 92 (191)
T d1luaa1 22 KGKKAVVLAGTGP-VGMRSAALLAG--EGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAVK---G 92 (191)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHTT---T
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHh--hccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHhc---C
Confidence 5789998886654 44444433221 15799999999999988888776643 11112222233445554442 4
Q ss_pred EEEEEEeCCC
Q 041272 174 VRLVAFNLGY 183 (267)
Q Consensus 174 ~d~ii~~~~~ 183 (267)
.|+++.+.+.
T Consensus 93 iDilin~Ag~ 102 (191)
T d1luaa1 93 AHFVFTAGAI 102 (191)
T ss_dssp CSEEEECCCT
T ss_pred cCeeeecCcc
Confidence 7888888653
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=86.50 E-value=0.39 Score=35.80 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=58.8
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-------------ccccceEEEecC
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-------------AEKGLVKLFNMC 160 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-------------~~~~~v~~~~~~ 160 (267)
.+|-=||+|+ | .++..++.. +.+|+.+|.+++.++.+.+++...-.. ....++.... +
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~------G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~ 77 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASK------GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTL-S 77 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEES-S
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccc-c
Confidence 4677788876 3 223344433 578999999999999888876542100 0011122111 1
Q ss_pred hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 161 HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 161 ~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
..+ -.+.|+|+-. +....+...++++++-+.++|+-++.-
T Consensus 78 ~~~-------~~~adlViEa----------v~E~l~~K~~lf~~l~~~~~~~~IiaS 117 (186)
T d1wdka3 78 YGD-------FGNVDLVVEA----------VVENPKVKQAVLAEVENHVREDAILAS 117 (186)
T ss_dssp STT-------GGGCSEEEEC----------CCSCHHHHHHHHHHHHTTSCTTCEEEE
T ss_pred ccc-------ccccceeeee----------ecchHHHHHHHHHHHHhhcCCCeeEEe
Confidence 111 1246777766 233456778999999999999888743
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=86.41 E-value=1.5 Score=34.46 Aligned_cols=81 Identities=17% Similarity=0.088 Sum_probs=49.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|++||=-|.++| ++..+|+.+-. -+++|+.+|.+++.++...+... .++..+..|..+... .
T Consensus 4 ~gK~alITGas~G-IG~aia~~la~--~Ga~V~i~~r~~~~l~~~~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~ 72 (276)
T d1bdba_ 4 KGEAVLITGGASG-LGRALVDRFVA--EGAKVAVLDKSAERLAELETDHG--------DNVLGIVGDVRSLEDQKQAASR 72 (276)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHG--------GGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHcC--------CCeeEEecccccHHHHHHHHHH
Confidence 4678888886654 55555554322 16899999999988776655432 355555555443322 1
Q ss_pred -CCCCCcEEEEEEeCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp 185 (267)
......+|+++.|.+..+
T Consensus 73 ~~~~~g~idilvnnAG~~~ 91 (276)
T d1bdba_ 73 CVARFGKIDTLIPNAGIWD 91 (276)
T ss_dssp HHHHHSCCCEEECCCCCCC
T ss_pred HHHHhCCcccccccccccC
Confidence 111246899999987643
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.30 E-value=1.4 Score=35.09 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=55.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|++.| ++..+|+.+-. -+++|+.+|.+++.++.+.+.+..........++..+..|..+... .
T Consensus 11 ~gKvalITGas~G-IG~aia~~la~--~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 11 QGQVAIVTGGATG-IGKAIVKELLE--LGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 5778888886665 55555543321 1689999999999888887776543211113467777766654432 1
Q ss_pred -CCCCCcEEEEEEeCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp 185 (267)
......+|+++.|.+..+
T Consensus 88 ~~~~~G~iDiLVnnAg~~~ 106 (297)
T d1yxma1 88 TLDTFGKINFLVNNGGGQF 106 (297)
T ss_dssp HHHHHSCCCEEEECCCCCC
T ss_pred HHHHhCCeEEEEeeccccc
Confidence 111246899999976543
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=86.11 E-value=1.4 Score=33.84 Aligned_cols=81 Identities=16% Similarity=0.048 Sum_probs=50.8
Q ss_pred EEEecCCCChHHHHHHHhcCCCCCCc-------EEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh----
Q 041272 98 VVDATCGNGYDTLMMLKMVADESSAG-------CVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---- 166 (267)
Q Consensus 98 VLDlGcG~G~~~~~la~~~~~~~p~~-------~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---- 166 (267)
||=-|++.| ++..+|+.+-. -+. .|+.++.+++.++...+.++..+ .++.++..|..+..+
T Consensus 4 vlITGas~G-IG~aia~~la~--~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g-----~~~~~~~~Dvt~~~~v~~~ 75 (240)
T d2bd0a1 4 LLITGAGKG-IGRAIALEFAR--AARHHPDFEPVLVLSSRTAADLEKISLECRAEG-----ALTDTITADISDMADVRRL 75 (240)
T ss_dssp EEEETTTSH-HHHHHHHHHHH--HTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT-----CEEEEEECCTTSHHHHHHH
T ss_pred EEEccCCCH-HHHHHHHHHHH--hCccccccCcEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHH
Confidence 455576665 55544443311 023 38999999999998888887755 566667666654432
Q ss_pred ---cCCCCCcEEEEEEeCCCCCC
Q 041272 167 ---IVPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 167 ---~~~~~~~~d~ii~~~~~lp~ 186 (267)
.......+|+++.|.+..+.
T Consensus 76 ~~~~~~~~g~iDilvnnAg~~~~ 98 (240)
T d2bd0a1 76 TTHIVERYGHIDCLVNNAGVGRF 98 (240)
T ss_dssp HHHHHHHTSCCSEEEECCCCCCC
T ss_pred HHHHHHHcCCcceeecccccccC
Confidence 12223468999999876443
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.01 E-value=1.2 Score=34.42 Aligned_cols=82 Identities=13% Similarity=0.226 Sum_probs=51.7
Q ss_pred CEEEEecCCCChHHHHHHHhc---CCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-----
Q 041272 96 DTVVDATCGNGYDTLMMLKMV---ADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI----- 167 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~---~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~----- 167 (267)
++||=-|+++ .++..+|+.+ .. .+.+|+.++.+++.++..++..+. ..++.++..|..+....
T Consensus 3 KtilITGas~-GIG~a~a~~l~~~a~--~g~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~Dvs~~~~v~~~~~ 73 (248)
T d1snya_ 3 NSILITGCNR-GLGLGLVKALLNLPQ--PPQHLFTTCRNREQAKELEDLAKN------HSNIHILEIDLRNFDAYDKLVA 73 (248)
T ss_dssp SEEEESCCSS-HHHHHHHHHHHTSSS--CCSEEEEEESCTTSCHHHHHHHHH------CTTEEEEECCTTCGGGHHHHHH
T ss_pred CEEEEeCCCC-HHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHhc------CCcEEEEEEEeccHHHHHHHHh
Confidence 4688667555 4677776543 11 157999999999888776654443 24677777666543221
Q ss_pred ----CCCCCcEEEEEEeCCCCCC
Q 041272 168 ----VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 ----~~~~~~~d~ii~~~~~lp~ 186 (267)
......+|+++.|.+....
T Consensus 74 ~i~~~~~~~~iDiLvnNAg~~~~ 96 (248)
T d1snya_ 74 DIEGVTKDQGLNVLFNNAGIAPK 96 (248)
T ss_dssp HHHHHHGGGCCSEEEECCCCCCC
T ss_pred hhHHHhhcCCcceEEeecccccc
Confidence 1123468999999876443
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=85.56 E-value=3.6 Score=31.89 Aligned_cols=84 Identities=14% Similarity=0.031 Sum_probs=52.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCCh-HHHHHHHHHHhhccccccccceEEEecChhhhhh---c--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS-EALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I-- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~-~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~-- 167 (267)
.|+++|=-|.+.| ++..+|+.+-. -+.+|+.+|.+. ..++.+.+.++..+ .++..+..|..+... .
T Consensus 6 ~gK~alITGas~G-IG~aia~~la~--~G~~Vv~~~r~~~~~~~~~~~~~~~~g-----~~~~~~~~Dvt~~~~v~~~~~ 77 (261)
T d1geea_ 6 EGKVVVITGSSTG-LGKSMAIRFAT--EKAKVVVNYRSKEDEANSVLEEIKKVG-----GEAIAVKGDVTVESDVINLVQ 77 (261)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHH--TTCEEEEEESSCHHHHHHHHHHHHHTT-----CEEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEeCCcHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHH
Confidence 4677887777665 45555543321 167999999875 46666677676654 466666666654322 1
Q ss_pred --CCCCCcEEEEEEeCCCCC
Q 041272 168 --VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp 185 (267)
......+|+++.|.+...
T Consensus 78 ~~~~~~G~iDiLVnnAG~~~ 97 (261)
T d1geea_ 78 SAIKEFGKLDVMINNAGLEN 97 (261)
T ss_dssp HHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHhCCCCEeeccceecC
Confidence 112246899999987643
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=85.10 E-value=4.8 Score=32.05 Aligned_cols=88 Identities=13% Similarity=0.039 Sum_probs=53.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+++|++||=.| |+|.++..+++.+-. -+.+|+++..+.+..+..++...... ......++.+|..+...+...
T Consensus 7 ~~~~gk~VlVTG-~sGfIGs~l~~~Ll~--~G~~V~~~vR~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~ 80 (342)
T d1y1pa1 7 VLPEGSLVLVTG-ANGFVASHVVEQLLE--HGYKVRGTARSASKLANLQKRWDAKY---PGRFETAVVEDMLKQGAYDEV 80 (342)
T ss_dssp SSCTTCEEEEET-TTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHS---TTTEEEEECSCTTSTTTTTTT
T ss_pred CCCCcCEEEEEC-CCCHHHHHHHHHHHH--CcCEEEEEeCCchhHHHHHHhhhccc---cccccEEEeccccchhhhhhh
Confidence 467889999888 559999888875522 14699999988877666555443322 123334455555444333222
Q ss_pred CCcEEEEEEeCCCC
Q 041272 171 STAVRLVAFNLGYL 184 (267)
Q Consensus 171 ~~~~d~ii~~~~~l 184 (267)
-..+|.++......
T Consensus 81 ~~~~~~v~~~a~~~ 94 (342)
T d1y1pa1 81 IKGAAGVAHIASVV 94 (342)
T ss_dssp TTTCSEEEECCCCC
T ss_pred cccchhhhhhcccc
Confidence 22467777665443
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=85.02 E-value=5.1 Score=28.68 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=59.1
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHH-HHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALK-STSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~-~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+..+|-=+|+|. |......+...+- ..+++-+|++++..+ .|.. +.... ...........++.+++.
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l---~~ElvLiD~~~~~a~g~alD-l~h~~-~~~~~~~~~~~~d~~~~~------ 87 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSL---ADELALVDVLEDKLKGEMMD-LQHGS-LFLQTPKIVADKDYSVTA------ 87 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTC---CSEEEEECSCHHHHHHHHHH-HHHTG-GGCCCSEEEECSSGGGGT------
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCC---CcEEEEEEeccchhHHHHHH-Hhccc-cccCCCeEEeccchhhcc------
Confidence 456899999876 5554444433332 358999999976542 2211 11111 001122222333332322
Q ss_pred CcEEEEEEeCCCCCCCCCceee----chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVIT----TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..|+|+...+........-.. ...-.+++.+++.+. .|+|+++++..+
T Consensus 88 -~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNP 139 (160)
T d1i0za1 88 -NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNP 139 (160)
T ss_dssp -TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSS
T ss_pred -cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCc
Confidence 357777776653332222111 122334555666665 799999887763
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=84.66 E-value=3.1 Score=29.13 Aligned_cols=112 Identities=17% Similarity=0.099 Sum_probs=51.7
Q ss_pred EEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE-ecChhhhhhcCCCCCcE
Q 041272 97 TVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF-NMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 97 ~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~~~~~~~ 174 (267)
+|-=+|+|. |.....+...-+ -.+++.+|+.++..+-...-+.... .....+..+. .++.+++. ..
T Consensus 3 KI~IIGaG~VG~~~A~~l~~~~----l~dl~l~D~~~~~~~~~~~Dl~~~~-~~~~~~~~i~~~~d~~~~~-------~a 70 (142)
T d1uxja1 3 KISIIGAGFVGSTTAHWLAAKE----LGDIVLLDIVEGVPQGKALDLYEAS-PIEGFDVRVTGTNNYADTA-------NS 70 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT----CSEEEEECSSSSHHHHHHHHHHTTH-HHHTCCCCEEEESCGGGGT-------TC
T ss_pred eEEEECCCHHHHHHHHHHHhCC----cceEEEEeeccccchhHHHHhhccc-cccCCCCEEEecCcHHHhc-------CC
Confidence 666778765 433332222222 2589999998876543333222211 0011223332 23333332 35
Q ss_pred EEEEEeCCCCCCCCCceee----chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 175 RLVAFNLGYLPGGDKSVIT----TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
|+++...+........-.. ..+-..++.+++.+. .|.|+++++..+
T Consensus 71 dvvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvtNP 120 (142)
T d1uxja1 71 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNNP 120 (142)
T ss_dssp SEEEECCSCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECSSS
T ss_pred CEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeCCc
Confidence 6777776553322222111 122234555555554 789999886663
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=84.34 E-value=5 Score=28.40 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=26.1
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHH
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKS 137 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~ 137 (267)
.+...+|-=||+|. |.....+....+ -.+++.+|++++.++-
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~----~~el~L~D~~~~~~~g 46 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRE----LADVVLYDVVKGMPEG 46 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHT----CCEEEEECSSSSHHHH
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCC----CceEEEEEeccccchh
Confidence 34566888899866 433333333322 2589999999876543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=83.61 E-value=2.2 Score=33.16 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=50.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|.+.| ++..+|+.+-. .+++|+.+|.+++.++...+.+ + .++.++..|..+..+ .
T Consensus 4 ~gK~alVTGas~G-IG~aia~~la~--~Ga~V~~~~r~~~~~~~~~~~~---~-----~~~~~~~~Dv~~~~~v~~~~~~ 72 (254)
T d1hdca_ 4 SGKTVIITGGARG-LGAEAARQAVA--AGARVVLADVLDEEGAATAREL---G-----DAARYQHLDVTIEEDWQRVVAY 72 (254)
T ss_dssp CCSEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHTT---G-----GGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHh---C-----CceEEEEcccCCHHHHHHHHHH
Confidence 4678888887766 44444443321 1689999999998776655433 2 456666665554322 1
Q ss_pred -CCCCCcEEEEEEeCCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~ 186 (267)
......+|+++.|.+....
T Consensus 73 ~~~~~g~iDilVnnAg~~~~ 92 (254)
T d1hdca_ 73 AREEFGSVDGLVNNAGISTG 92 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCC
T ss_pred HHHHcCCccEEEecCccccc
Confidence 1112368999999876443
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.55 E-value=5.3 Score=27.85 Aligned_cols=38 Identities=13% Similarity=0.062 Sum_probs=22.4
Q ss_pred CEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHH
Q 041272 96 DTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALK 136 (267)
Q Consensus 96 ~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~ 136 (267)
++|-=+|+|. |.....+....+. ..+++-+|++++..+
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~---~~elvL~Di~~~~~~ 39 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLD---VDEIALVDIAEDLAV 39 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSC---CSEEEEECSSHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCc---CceEEEEecccchhh
Confidence 3666788755 4333332222222 357999999998754
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=83.46 E-value=2 Score=33.36 Aligned_cols=85 Identities=12% Similarity=-0.008 Sum_probs=52.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.|+++|=-|.+ +.++..+|+.+-. -+++|+.+|.+++.++.+.+.+.+.. ..++..+..|..+....
T Consensus 8 ~gK~alITGas-~GIG~aia~~la~--~Ga~V~i~~r~~~~~~~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~ 80 (260)
T d1h5qa_ 8 VNKTIIVTGGN-RGIGLAFTRAVAA--AGANVAVIYRSAADAVEVTEKVGKEF----GVKTKAYQCDVSNTDIVTKTIQQ 80 (260)
T ss_dssp TTEEEEEETTT-SHHHHHHHHHHHH--TTEEEEEEESSCTTHHHHHHHHHHHH----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHHh----CCceEEEEccCCCHHHHHHHHHH
Confidence 36678888855 4555555554322 16899999999987776666554321 24666676665543321
Q ss_pred -CCCCCcEEEEEEeCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp 185 (267)
......+|+++.|.+..+
T Consensus 81 ~~~~~g~iDilVnnAg~~~ 99 (260)
T d1h5qa_ 81 IDADLGPISGLIANAGVSV 99 (260)
T ss_dssp HHHHSCSEEEEEECCCCCC
T ss_pred HHHHhCCCcEecccccccc
Confidence 122347999999987643
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.37 E-value=6 Score=28.21 Aligned_cols=116 Identities=12% Similarity=0.037 Sum_probs=55.4
Q ss_pred CCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 95 GDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 95 ~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
..+|-=+|+|. |.....+....+- ..+++-+|++++..+--..-+..... ...........+.+++. .
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~~~~l---~~elvL~D~~~~~a~g~alDl~~~~~-~~~~~~~~~~~d~~~~~-------~ 87 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISILLKGL---ADELALVDADTDKLRGEALDLQHGSL-FLSTPKIVFGKDYNVSA-------N 87 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTS---CSEEEEECSCHHHHHHHHHHHHHTTT-TCSCCEEEEESSGGGGT-------T
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCC---CCEEEEEeCCchhhhccHHHHhCcch-hcCCCeEEeccchhhhc-------c
Confidence 45899999865 4443333333222 34899999998654311111221110 01122222333332221 4
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhc---ccCCcEEEEEEec
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI---LIPGGLISMVVYV 221 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~---LkpgG~l~i~~~~ 221 (267)
.|+++...+........-......-..+++++... ..|+|+++++..+
T Consensus 88 adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNP 138 (159)
T d2ldxa1 88 SKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138 (159)
T ss_dssp EEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSS
T ss_pred ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCc
Confidence 78888776653332222111222223444444332 2799999887763
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=83.03 E-value=2.5 Score=32.49 Aligned_cols=84 Identities=12% Similarity=-0.002 Sum_probs=49.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.|+.+|=-|.+. .++..+|+.+-. -+++|+.+|.++. +.+++.++..+ .++..+..|..+..+.
T Consensus 4 ~gKvalVTGas~-GIG~aia~~la~--~Ga~V~~~~~~~~--~~~~~~~~~~g-----~~~~~~~~Dvs~~~~v~~~~~~ 73 (247)
T d2ew8a1 4 KDKLAVITGGAN-GIGRAIAERFAV--EGADIAIADLVPA--PEAEAAIRNLG-----RRVLTVKCDVSQPGDVEAFGKQ 73 (247)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHH--TTCEEEEEESSCC--HHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHH--CCCEEEEEECCch--HHHHHHHHHcC-----CcEEEEEeeCCCHHHHHHHHHH
Confidence 366777777554 455555544322 1679999998874 23344444433 5666776665544321
Q ss_pred -CCCCCcEEEEEEeCCCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLPGG 187 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~~ 187 (267)
......+|+++.|.+..+..
T Consensus 74 ~~~~~G~iDilVnnAG~~~~~ 94 (247)
T d2ew8a1 74 VISTFGRCDILVNNAGIYPLI 94 (247)
T ss_dssp HHHHHSCCCEEEECCCCCCCC
T ss_pred HHHHcCCCCEEEECCCCCCCC
Confidence 11124689999998875543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.91 E-value=1.9 Score=33.57 Aligned_cols=83 Identities=13% Similarity=0.001 Sum_probs=51.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.|+++|=-|+++| ++..+|+.+-. -+.+|+.++.+++.++.+.+...... ...+..+..+..+....
T Consensus 13 ~GK~alITGassG-IG~aiA~~la~--~G~~Vil~~r~~~~l~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~ 85 (269)
T d1xu9a_ 13 QGKKVIVTGASKG-IGREMAYHLAK--MGAHVVVTARSKETLQKVVSHCLELG----AASAHYIAGTMEDMTFAEQFVAQ 85 (269)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHT----CSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHhhhh----cccchhhhhhhhhHHHHHHHHHH
Confidence 4788998888876 44444443321 16899999999999998887765543 24555555444332111
Q ss_pred -CCCCCcEEEEEEeCCC
Q 041272 168 -VPKSTAVRLVAFNLGY 183 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~ 183 (267)
.......|+++.|.+.
T Consensus 86 ~~~~~g~~~~li~nag~ 102 (269)
T d1xu9a_ 86 AGKLMGGLDMLILNHIT 102 (269)
T ss_dssp HHHHHTSCSEEEECCCC
T ss_pred HHHHhCCcccccccccc
Confidence 1112357788877655
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=82.85 E-value=4.1 Score=31.32 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=50.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|.++| ++..+|+.+-. -+.+|+.+|.+++.++.+.+.+ + .++..+..|..+... .
T Consensus 4 ~gK~alVTGas~G-IG~aia~~la~--~Ga~V~~~~r~~~~l~~~~~~~---~-----~~~~~~~~Dvt~~~~v~~~~~~ 72 (256)
T d1k2wa_ 4 DGKTALITGSARG-IGRAFAEAYVR--EGARVAIADINLEAARATAAEI---G-----PAACAIALDVTDQASIDRCVAE 72 (256)
T ss_dssp TTEEEEEETCSSH-HHHHHHHHHHH--TTEEEEEEESCHHHHHHHHHHH---C-----TTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHh---C-----CceEEEEeeCCCHHHHHHHHHH
Confidence 3667888886654 55455543322 1689999999998777665544 2 355556555544322 1
Q ss_pred -CCCCCcEEEEEEeCCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~ 186 (267)
......+|+++.|.+....
T Consensus 73 ~~~~~g~iDilVnnAg~~~~ 92 (256)
T d1k2wa_ 73 LLDRWGSIDILVNNAALFDL 92 (256)
T ss_dssp HHHHHSCCCEEEECCCCCCC
T ss_pred HHHHhCCccEEEeecccccc
Confidence 1112468999999886543
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=82.44 E-value=6.2 Score=27.66 Aligned_cols=114 Identities=13% Similarity=0.038 Sum_probs=54.6
Q ss_pred CEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 96 DTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 96 ~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
.+|-=+|+|. |......+...+- ..+++-+|++++..+--..-+.... .....+.....++.+++. ..
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~---~~elvL~Di~~~~~~g~~~Dl~~a~-~~~~~~~~~~~~d~~~l~-------~a 70 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGV---ADDYVFIDANEAKVKADQIDFQDAM-ANLEAHGNIVINDWAALA-------DA 70 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC---CSEEEEECSSHHHHHHHHHHHHHHG-GGSSSCCEEEESCGGGGT-------TC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCC---CceEEEEecccchhhhHHHhhhccc-cccCCccceeccCHHHhc-------cc
Confidence 3667788765 4333332222221 3589999999986542222222211 011223344444444432 35
Q ss_pred EEEEEeCCCCC------CCCCc--eeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 175 RLVAFNLGYLP------GGDKS--VITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 175 d~ii~~~~~lp------~~d~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
|+++...+... ..++. +.....-..++.+++.+. .|+++++++..+
T Consensus 71 diVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNP 124 (146)
T d1hyha1 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNP 124 (146)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred cEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCc
Confidence 77777665422 11111 001122234455555543 799998887763
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=82.37 E-value=2 Score=33.20 Aligned_cols=78 Identities=12% Similarity=0.020 Sum_probs=45.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh---h----
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME---E---- 166 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~---~---- 166 (267)
.|+++|=-|.+. .++..+|+.+-. -+.+|+.+|.+++..+.+++. +..++..|..+.. .
T Consensus 4 ~GK~alITGas~-GIG~aia~~la~--~G~~V~~~~~~~~~~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~ 69 (248)
T d2d1ya1 4 AGKGVLVTGGAR-GIGRAIAQAFAR--EGALVALCDLRPEGKEVAEAI-----------GGAFFQVDLEDERERVRFVEE 69 (248)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHH--TTCEEEEEESSTTHHHHHHHH-----------TCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHc-----------CCeEEEEeCCCHHHHHHHHHH
Confidence 477888888555 455555554322 168999999998876554431 1233444443321 1
Q ss_pred cCCCCCcEEEEEEeCCCCC
Q 041272 167 IVPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp 185 (267)
....-..+|+++.|.+...
T Consensus 70 ~~~~~G~iDiLVnnAG~~~ 88 (248)
T d2d1ya1 70 AAYALGRVDVLVNNAAIAA 88 (248)
T ss_dssp HHHHHSCCCEEEECCCCCC
T ss_pred HHHhcCCCCeEEEeCcCCC
Confidence 1111246899999987643
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=82.00 E-value=1.5 Score=27.50 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=36.2
Q ss_pred hcCCCCEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 91 VVRKGDTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
..+++.+||=.|... |.+++.+++..+ .+|+++--|++-.+.+++
T Consensus 28 ~~~~~~~vlI~gasGgVG~~aiQlak~~G-----~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 28 VRPQDGEIVVTGASGGVGSTAVALLHKLG-----YQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp CCGGGCEEEESSTTSHHHHHHHHHHHHTT-----CCEEEEESCGGGHHHHHH
T ss_pred hccCCCcEEEEeCCCcHHHHHHHHHHHcC-----CeEEEEECCHHHHHHHHH
Confidence 356788888877644 788889998874 699999999998888875
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=81.50 E-value=2.8 Score=30.28 Aligned_cols=89 Identities=15% Similarity=0.063 Sum_probs=48.7
Q ss_pred CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCC
Q 041272 104 GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGY 183 (267)
Q Consensus 104 G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~ 183 (267)
|-|.++..||+++-. .+.+|++.|++++.++...++..... .. .......++.+... ..|.++....
T Consensus 9 GlG~MG~~mA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~~------~~-~~a~~~~~~~~~~~---~~~~ii~~~~- 75 (176)
T d2pgda2 9 GLAVMGQNLILNMND--HGFVVCAFNRTVSKVDDFLANEAKGT------KV-LGAHSLEEMVSKLK---KPRRIILLVK- 75 (176)
T ss_dssp CCSHHHHHHHHHHHH--TTCCEEEECSSTHHHHHHHHTTTTTS------SC-EECSSHHHHHHHBC---SSCEEEECSC-
T ss_pred eEhHHHHHHHHHHHH--CCCeEEEEcCCHHHHHHHHHhccccc------cc-cchhhhhhhhhhhc---ccceEEEecC-
Confidence 345666666665432 14689999999998887765432211 11 11112233333222 2456665521
Q ss_pred CCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 184 LPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 184 lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
..+.....+..+...+++|-++
T Consensus 76 ----------~~~~v~~v~~~l~~~~~~g~ii 97 (176)
T d2pgda2 76 ----------AGQAVDNFIEKLVPLLDIGDII 97 (176)
T ss_dssp ----------TTHHHHHHHHHHHHHCCTTCEE
T ss_pred ----------chHHHHHHHHHHHhccccCcEE
Confidence 1234456777888888887755
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=81.20 E-value=0.42 Score=34.29 Aligned_cols=94 Identities=14% Similarity=0.027 Sum_probs=48.9
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++|+=+|+|. | .++..|++. +.+|+.++.+++..+.. ...+.+.......+.......+ ..
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~------G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------~~ 63 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCSV----NLVETDGSIFNESLTANDPDFL-------AT 63 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEEE----EEECTTSCEEEEEEEESCHHHH-------HT
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCceEEEEcCHHHhhhh----ccccCCccccccccccchhhhh-------cc
Confidence 5788899976 3 333444443 46899999887532211 1111000000011111111111 14
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
+|+++.... ....+.+++.+...++++..++..
T Consensus 64 ~D~iii~vk------------a~~~~~~~~~l~~~~~~~~~Iv~~ 96 (167)
T d1ks9a2 64 SDLLLVTLK------------AWQVSDAVKSLASTLPVTTPILLI 96 (167)
T ss_dssp CSEEEECSC------------GGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred cceEEEeec------------ccchHHHHHhhccccCcccEEeec
Confidence 677766531 245578899999998888876543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.19 E-value=2.5 Score=32.58 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=50.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.|+++|=-|++.| ++..+|+.+-. -+.+|+.+|.+++.++...+.+. .++.++..|..+... .
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~ 73 (244)
T d1nffa_ 5 TGKVALVSGGARG-MGASHVRAMVA--EGAKVVFGDILDEEGKAMAAELA--------DAARYVHLDVTQPAQWKAAVDT 73 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHTG--------GGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHhh--------CcceEEEeecCCHHHHHHHHHH
Confidence 4678888887765 45444443321 16899999999988777666543 345556555544322 1
Q ss_pred -CCCCCcEEEEEEeCCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~ 186 (267)
......+|+++.|.+..+.
T Consensus 74 ~~~~~g~idilinnAG~~~~ 93 (244)
T d1nffa_ 74 AVTAFGGLHVLVNNAGILNI 93 (244)
T ss_dssp HHHHHSCCCEEEECCCCCCC
T ss_pred HHHHhCCCeEEEECCcccCC
Confidence 1112468999999877543
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=80.46 E-value=7.2 Score=27.11 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=48.5
Q ss_pred EEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHH-HHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 97 TVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALK-STSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 97 ~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~-~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
+|-=+|+|. |..........+- ..+++-+|++++..+ .+.. +.... ..........++.+++. ..
T Consensus 3 KI~IIGaG~VG~~~a~~l~~~~l---~~el~L~D~~~~~~~g~a~D-l~~~~--~~~~~~~~~~~~~~~~~-------~a 69 (142)
T d1y6ja1 3 KVAIIGAGFVGASAAFTMALRQT---ANELVLIDVFKEKAIGEAMD-INHGL--PFMGQMSLYAGDYSDVK-------DC 69 (142)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC---SSEEEEECCC---CCHHHHH-HTTSC--CCTTCEEEC--CGGGGT-------TC
T ss_pred eEEEECCCHHHHHHHHHHHhcCC---CCEEEEEeccCCccceeeee-eccCc--ccCCCeeEeeCcHHHhC-------CC
Confidence 566778866 5444443333222 358999999987532 1111 11111 01233444433333222 35
Q ss_pred EEEEEeCCCCCCCCCceee----chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVIT----TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|+++...+.-......-.. ..+-..++.+++.+. .|.|+++++..
T Consensus 70 divvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~ivvtN 118 (142)
T d1y6ja1 70 DVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSN 118 (142)
T ss_dssp SEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSS
T ss_pred ceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhcc-CCCceEEEecC
Confidence 7777776542222111111 112223444455554 69998877665
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=80.26 E-value=3.1 Score=31.79 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=64.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.|+++|=.|++.| ++..+|+.+-. -+.+|+.++.+.+.++...+.+ + .++.++..|..+-...
T Consensus 4 ~gK~alItGas~G-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~---~-----~~~~~~~~Dls~~~~i~~~~~~ 72 (241)
T d2a4ka1 4 SGKTILVTGAASG-IGRAALDLFAR--EGASLVAVDREERLLAEAVAAL---E-----AEAIAVVADVSDPKAVEAVFAE 72 (241)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHTC---C-----SSEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHc---C-----CceEEEEecCCCHHHHHHHHHH
Confidence 4678888887755 45454544321 1689999999998776554432 2 4566666555433221
Q ss_pred -CCCCCcEEEEEEeCCCCCCCCCceee-ch-----------hhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 168 -VPKSTAVRLVAFNLGYLPGGDKSVIT-TS-----------ETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~~d~~~~~-~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
...-..+|+++.|.+..+... +.. .. ...-.+.+.+...++.++.+.++...
T Consensus 73 i~~~~g~iDiLinnAg~~~~~~--~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~ 137 (241)
T d2a4ka1 73 ALEEFGRLHGVAHFAGVAHSAL--SWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV 137 (241)
T ss_dssp HHHHHSCCCEEEEGGGGTTTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred HHHHhCCccEeccccccccccc--hhhhhccccccccccccccccccccccccccccccceeecccc
Confidence 111136899999875533221 111 11 11233456667778888877665543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.08 E-value=1 Score=33.44 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=28.6
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
++|-=+| .|+.++.+|..+.. +.+|+|+|++++.++..++
T Consensus 1 MkI~ViG--lG~vGl~~a~~~a~---g~~V~g~Din~~~v~~l~~ 40 (196)
T d1dlja2 1 MKIAVAG--SGYVGLSLGVLLSL---QNEVTIVDILPSKVDKINN 40 (196)
T ss_dssp CEEEEEC--CSHHHHHHHHHHTT---TSEEEEECSCHHHHHHHHT
T ss_pred CEEEEEC--CChhHHHHHHHHHC---CCcEEEEECCHHHHHHHhh
Confidence 3555565 56777776665533 5799999999999887764
|